Query 010739
Match_columns 502
No_of_seqs 449 out of 2870
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.8E-58 3.9E-63 492.4 47.0 388 84-496 384-809 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.2E-58 4.8E-63 491.6 44.6 376 99-501 388-775 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.8E-54 1.3E-58 454.2 38.2 352 115-501 191-549 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.1E-53 4.5E-58 450.0 39.1 376 85-499 102-513 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.8E-53 6E-58 459.4 39.0 371 86-501 238-646 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.6E-52 3.5E-57 453.4 36.7 355 114-500 153-544 (857)
7 PRK11788 tetratricopeptide rep 99.9 2.4E-18 5.1E-23 170.9 32.8 299 123-447 45-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 5E-17 1.1E-21 178.8 44.4 350 113-495 465-819 (899)
9 PRK11788 tetratricopeptide rep 99.8 2.3E-18 4.9E-23 171.0 30.1 308 168-494 47-361 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 3.2E-17 6.9E-22 180.4 41.9 373 84-500 513-891 (899)
11 KOG4422 Uncharacterized conser 99.7 6.2E-13 1.3E-17 123.1 32.8 240 147-406 206-463 (625)
12 PRK15174 Vi polysaccharide exp 99.7 2.8E-12 6.1E-17 134.5 39.9 333 86-457 58-398 (656)
13 PRK15174 Vi polysaccharide exp 99.6 4.9E-12 1.1E-16 132.6 39.3 330 116-479 45-381 (656)
14 KOG4422 Uncharacterized conser 99.6 1E-11 2.2E-16 115.2 31.0 337 115-481 209-592 (625)
15 TIGR00990 3a0801s09 mitochondr 99.6 2.3E-10 5E-15 120.2 42.8 364 116-499 130-561 (615)
16 TIGR00990 3a0801s09 mitochondr 99.5 3.8E-10 8.3E-15 118.6 41.7 350 86-479 143-571 (615)
17 PRK11447 cellulose synthase su 99.5 2.1E-10 4.5E-15 128.6 39.9 357 113-500 303-731 (1157)
18 PRK10049 pgaA outer membrane p 99.5 1.1E-09 2.4E-14 117.4 42.9 375 86-494 31-470 (765)
19 PF13041 PPR_2: PPR repeat fam 99.5 1.6E-13 3.5E-18 91.9 6.8 50 409-458 1-50 (50)
20 PF13041 PPR_2: PPR repeat fam 99.5 2.1E-13 4.5E-18 91.4 6.5 50 339-388 1-50 (50)
21 PRK10049 pgaA outer membrane p 99.4 3.7E-09 8E-14 113.5 42.4 360 111-500 13-447 (765)
22 PRK11447 cellulose synthase su 99.4 1.7E-09 3.7E-14 121.4 37.8 347 86-477 367-738 (1157)
23 PRK14574 hmsH outer membrane p 99.4 1.4E-08 3E-13 107.6 40.7 352 86-476 50-476 (822)
24 KOG4318 Bicoid mRNA stability 99.3 4.6E-11 1E-15 120.0 17.5 68 135-211 11-79 (1088)
25 KOG4318 Bicoid mRNA stability 99.3 3.6E-10 7.8E-15 113.8 23.2 271 99-426 8-286 (1088)
26 KOG4626 O-linked N-acetylgluco 99.3 9.7E-09 2.1E-13 99.9 29.6 347 114-498 117-474 (966)
27 PRK14574 hmsH outer membrane p 99.3 9.8E-08 2.1E-12 101.2 39.2 353 116-499 38-469 (822)
28 PF13429 TPR_15: Tetratricopep 99.3 2.7E-11 6E-16 114.3 11.5 251 168-436 20-273 (280)
29 KOG4626 O-linked N-acetylgluco 99.3 4.5E-09 9.8E-14 102.2 26.1 311 147-495 115-430 (966)
30 PRK10747 putative protoheme IX 99.3 5.1E-08 1.1E-12 96.5 34.7 279 126-438 97-388 (398)
31 PRK10747 putative protoheme IX 99.2 7E-08 1.5E-12 95.6 31.5 283 169-476 97-387 (398)
32 PF13429 TPR_15: Tetratricopep 99.2 4.3E-10 9.4E-15 106.1 14.9 258 118-402 13-274 (280)
33 TIGR00540 hemY_coli hemY prote 99.2 7.4E-08 1.6E-12 95.9 31.3 126 342-475 264-395 (409)
34 KOG2076 RNA polymerase III tra 99.1 6.1E-07 1.3E-11 91.5 35.6 363 83-480 152-556 (895)
35 TIGR00540 hemY_coli hemY prote 99.1 4E-07 8.6E-12 90.7 33.4 256 168-437 130-396 (409)
36 COG2956 Predicted N-acetylgluc 99.1 8.2E-07 1.8E-11 80.4 29.2 310 169-494 48-361 (389)
37 KOG2003 TPR repeat-containing 99.1 7.8E-07 1.7E-11 83.8 29.5 296 168-479 288-689 (840)
38 PRK09782 bacteriophage N4 rece 99.1 3.1E-06 6.7E-11 91.9 38.4 302 116-441 379-707 (987)
39 PRK09782 bacteriophage N4 rece 99.0 4.2E-06 9.1E-11 90.9 37.7 289 168-480 388-707 (987)
40 COG3071 HemY Uncharacterized e 99.0 1.8E-06 3.9E-11 80.5 29.7 288 126-444 97-394 (400)
41 PF12854 PPR_1: PPR repeat 99.0 5E-10 1.1E-14 67.4 4.0 34 185-218 1-34 (34)
42 TIGR02521 type_IV_pilW type IV 99.0 4.3E-07 9.3E-12 82.7 24.3 200 190-438 30-230 (234)
43 COG2956 Predicted N-acetylgluc 99.0 4.2E-07 9.1E-12 82.2 22.5 239 241-491 42-289 (389)
44 TIGR02521 type_IV_pilW type IV 98.9 7.2E-07 1.6E-11 81.1 24.9 198 269-478 31-231 (234)
45 COG3071 HemY Uncharacterized e 98.9 1E-05 2.2E-10 75.6 29.3 286 86-410 100-395 (400)
46 PF12854 PPR_1: PPR repeat 98.9 3.3E-09 7.2E-14 63.9 4.0 32 406-437 2-33 (34)
47 PF12569 NARP1: NMDA receptor- 98.9 5.5E-06 1.2E-10 83.4 29.1 288 168-476 16-331 (517)
48 KOG1126 DNA-binding cell divis 98.8 2E-06 4.4E-11 85.1 23.3 282 169-478 332-619 (638)
49 PF12569 NARP1: NMDA receptor- 98.8 2.2E-05 4.7E-10 79.1 30.7 291 121-439 12-333 (517)
50 PRK12370 invasion protein regu 98.8 4.2E-06 9E-11 86.7 25.7 146 131-296 321-467 (553)
51 KOG1126 DNA-binding cell divis 98.8 5.6E-06 1.2E-10 82.1 24.6 182 247-441 434-621 (638)
52 KOG1840 Kinesin light chain [C 98.7 5.3E-06 1.2E-10 82.6 24.7 258 191-456 199-501 (508)
53 PRK12370 invasion protein regu 98.7 1.4E-05 3E-10 82.8 29.1 201 147-368 255-468 (553)
54 KOG2002 TPR-containing nuclear 98.7 5.3E-05 1.2E-09 78.4 31.6 321 131-479 397-745 (1018)
55 KOG2076 RNA polymerase III tra 98.7 0.00023 5E-09 73.2 33.7 331 116-477 143-510 (895)
56 KOG1155 Anaphase-promoting com 98.6 0.00031 6.8E-09 67.1 31.4 183 245-435 341-531 (559)
57 KOG2003 TPR repeat-containing 98.6 2.1E-05 4.6E-10 74.3 22.9 271 168-457 431-705 (840)
58 KOG2002 TPR-containing nuclear 98.6 0.00024 5.3E-09 73.7 30.4 242 248-500 427-736 (1018)
59 KOG1840 Kinesin light chain [C 98.5 3.4E-05 7.4E-10 76.9 23.2 233 240-477 205-477 (508)
60 KOG1155 Anaphase-promoting com 98.5 0.00042 9.2E-09 66.2 28.2 284 168-475 239-532 (559)
61 KOG0495 HAT repeat protein [RN 98.5 0.0021 4.6E-08 64.2 34.5 346 122-501 415-774 (913)
62 TIGR00756 PPR pentatricopeptid 98.4 3.5E-07 7.6E-12 55.8 4.4 35 342-376 1-35 (35)
63 KOG1915 Cell cycle control pro 98.4 0.002 4.4E-08 61.9 34.6 323 124-480 152-501 (677)
64 TIGR00756 PPR pentatricopeptid 98.4 4.4E-07 9.6E-12 55.3 4.4 35 412-446 1-35 (35)
65 KOG1129 TPR repeat-containing 98.4 4.8E-05 1E-09 69.2 18.4 227 240-479 229-458 (478)
66 KOG1129 TPR repeat-containing 98.4 4.9E-05 1.1E-09 69.2 17.7 237 190-446 222-462 (478)
67 PF13812 PPR_3: Pentatricopept 98.3 8.5E-07 1.8E-11 53.6 4.1 33 192-224 2-34 (34)
68 PF13812 PPR_3: Pentatricopept 98.3 1.3E-06 2.8E-11 52.8 4.1 33 342-374 2-34 (34)
69 cd05804 StaR_like StaR_like; a 98.3 0.0058 1.3E-07 59.7 32.5 305 116-477 9-334 (355)
70 KOG2047 mRNA splicing factor [ 98.3 0.004 8.7E-08 62.1 29.5 289 116-427 390-710 (835)
71 PRK11189 lipoprotein NlpI; Pro 98.2 0.0013 2.9E-08 62.3 24.9 223 131-381 43-275 (296)
72 KOG4340 Uncharacterized conser 98.2 0.002 4.3E-08 58.3 23.2 287 114-436 11-335 (459)
73 KOG0547 Translocase of outer m 98.2 0.0088 1.9E-07 57.9 29.7 232 248-492 340-579 (606)
74 PF01535 PPR: PPR repeat; Int 98.1 2.6E-06 5.7E-11 50.2 3.3 31 342-372 1-31 (31)
75 PF01535 PPR: PPR repeat; Int 98.1 2.5E-06 5.4E-11 50.3 3.2 31 192-222 1-31 (31)
76 PF04733 Coatomer_E: Coatomer 98.1 0.00048 1E-08 64.6 19.9 239 240-498 41-284 (290)
77 COG3063 PilF Tfp pilus assembl 98.1 0.0032 7E-08 55.0 23.0 194 272-476 38-233 (250)
78 KOG0985 Vesicle coat protein c 98.1 0.0042 9E-08 65.0 27.2 329 116-489 841-1233(1666)
79 KOG3616 Selective LIM binding 98.1 0.0012 2.5E-08 66.6 22.6 188 275-498 738-926 (1636)
80 PF04733 Coatomer_E: Coatomer 98.1 0.00012 2.5E-09 68.8 14.9 244 168-440 13-265 (290)
81 cd05804 StaR_like StaR_like; a 98.1 0.0048 1E-07 60.3 27.1 157 122-297 52-213 (355)
82 PRK11189 lipoprotein NlpI; Pro 98.1 0.0036 7.8E-08 59.4 25.2 223 248-488 40-273 (296)
83 KOG1173 Anaphase-promoting com 98.0 0.013 2.9E-07 57.7 28.1 270 168-458 256-534 (611)
84 PF08579 RPM2: Mitochondrial r 98.0 3.8E-05 8.3E-10 58.9 8.6 82 193-282 27-117 (120)
85 PF10037 MRP-S27: Mitochondria 98.0 7.1E-05 1.5E-09 73.0 11.8 119 340-458 65-185 (429)
86 COG3063 PilF Tfp pilus assembl 98.0 0.0023 4.9E-08 56.0 19.3 189 116-327 38-229 (250)
87 PF08579 RPM2: Mitochondrial r 98.0 0.00015 3.3E-09 55.7 10.4 73 386-458 35-116 (120)
88 KOG0547 Translocase of outer m 97.9 0.0012 2.6E-08 63.7 18.5 217 127-368 340-564 (606)
89 PF06239 ECSIT: Evolutionarily 97.9 0.0003 6.4E-09 61.0 12.8 122 145-296 44-165 (228)
90 KOG1128 Uncharacterized conser 97.9 0.0011 2.3E-08 67.1 18.0 237 187-457 394-634 (777)
91 KOG1070 rRNA processing protei 97.9 0.0077 1.7E-07 65.3 25.0 236 136-395 1446-1690(1710)
92 KOG1156 N-terminal acetyltrans 97.9 0.041 8.8E-07 55.3 32.5 337 116-480 77-469 (700)
93 PF10037 MRP-S27: Mitochondria 97.8 0.00056 1.2E-08 66.8 15.0 131 256-389 50-186 (429)
94 KOG1173 Anaphase-promoting com 97.8 0.018 3.9E-07 56.9 24.6 278 116-423 247-534 (611)
95 KOG1914 mRNA cleavage and poly 97.8 0.045 9.7E-07 53.9 31.5 128 342-476 367-498 (656)
96 KOG0495 HAT repeat protein [RN 97.8 0.057 1.2E-06 54.5 36.2 208 169-399 563-776 (913)
97 PRK04841 transcriptional regul 97.8 0.11 2.4E-06 57.8 33.9 299 168-476 421-757 (903)
98 KOG1156 N-terminal acetyltrans 97.7 0.063 1.4E-06 54.0 29.8 301 116-442 146-470 (700)
99 PF06239 ECSIT: Evolutionarily 97.7 0.00044 9.6E-09 60.0 10.7 100 340-458 46-150 (228)
100 PRK04841 transcriptional regul 97.7 0.14 3.1E-06 56.9 34.5 302 168-478 386-719 (903)
101 KOG1070 rRNA processing protei 97.7 0.0076 1.6E-07 65.3 21.4 192 247-448 1471-1671(1710)
102 KOG2376 Signal recognition par 97.7 0.079 1.7E-06 52.8 32.6 368 84-493 26-505 (652)
103 KOG4340 Uncharacterized conser 97.7 0.0036 7.9E-08 56.6 15.9 252 122-400 87-370 (459)
104 COG4783 Putative Zn-dependent 97.6 0.055 1.2E-06 52.7 24.8 238 119-404 208-453 (484)
105 KOG3617 WD40 and TPR repeat-co 97.6 0.1 2.3E-06 54.0 27.9 54 443-500 1138-1191(1416)
106 KOG0985 Vesicle coat protein c 97.6 0.066 1.4E-06 56.6 26.4 338 112-499 983-1373(1666)
107 TIGR03302 OM_YfiO outer membra 97.6 0.019 4.1E-07 52.4 20.4 55 419-477 174-230 (235)
108 KOG1128 Uncharacterized conser 97.5 0.04 8.7E-07 56.2 22.6 228 118-387 403-634 (777)
109 TIGR03302 OM_YfiO outer membra 97.5 0.017 3.7E-07 52.7 19.0 169 268-440 32-232 (235)
110 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0088 1.9E-07 58.3 17.5 123 237-368 168-295 (395)
111 PRK14720 transcript cleavage f 97.4 0.08 1.7E-06 56.8 24.7 247 189-473 29-284 (906)
112 PRK15179 Vi polysaccharide bio 97.4 0.11 2.3E-06 55.0 25.3 129 247-383 99-229 (694)
113 KOG2047 mRNA splicing factor [ 97.4 0.2 4.4E-06 50.6 34.5 179 81-281 86-293 (835)
114 TIGR02552 LcrH_SycD type III s 97.3 0.012 2.6E-07 48.4 14.4 111 342-456 18-128 (135)
115 KOG3616 Selective LIM binding 97.3 0.046 9.9E-07 55.7 19.8 187 168-399 744-931 (1636)
116 KOG1915 Cell cycle control pro 97.3 0.22 4.7E-06 48.5 37.2 335 115-484 176-541 (677)
117 PRK10370 formate-dependent nit 97.3 0.024 5.2E-07 50.1 16.3 130 319-455 53-186 (198)
118 KOG3081 Vesicle coat complex C 97.2 0.039 8.4E-07 49.5 16.9 171 255-439 94-270 (299)
119 PF05843 Suf: Suppressor of fo 97.2 0.0067 1.5E-07 56.9 13.1 144 270-421 2-150 (280)
120 PF14938 SNAP: Soluble NSF att 97.2 0.054 1.2E-06 51.0 19.3 133 343-478 116-265 (282)
121 PF09976 TPR_21: Tetratricopep 97.2 0.03 6.6E-07 46.7 15.4 123 312-436 18-143 (145)
122 KOG3785 Uncharacterized conser 97.2 0.21 4.6E-06 46.7 25.9 85 384-476 401-487 (557)
123 KOG3081 Vesicle coat complex C 97.1 0.19 4.1E-06 45.3 20.8 150 316-480 118-272 (299)
124 KOG3617 WD40 and TPR repeat-co 97.1 0.18 3.8E-06 52.4 21.9 243 145-438 723-994 (1416)
125 KOG2376 Signal recognition par 97.1 0.39 8.5E-06 48.1 29.4 335 120-498 19-435 (652)
126 TIGR02552 LcrH_SycD type III s 97.1 0.02 4.3E-07 47.0 13.1 92 168-272 29-121 (135)
127 COG5010 TadD Flp pilus assembl 97.1 0.042 9.2E-07 49.2 15.4 154 121-296 74-228 (257)
128 PRK14720 transcript cleavage f 97.0 0.27 5.9E-06 52.9 24.0 126 115-263 33-178 (906)
129 PRK15359 type III secretion sy 97.0 0.017 3.7E-07 48.1 12.3 99 113-221 24-122 (144)
130 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.03 6.4E-07 54.7 15.3 118 275-402 175-294 (395)
131 KOG1914 mRNA cleavage and poly 97.0 0.12 2.6E-06 51.1 18.8 175 249-428 346-527 (656)
132 PRK15179 Vi polysaccharide bio 97.0 0.21 4.6E-06 52.9 22.3 139 312-456 92-232 (694)
133 PRK10370 formate-dependent nit 96.9 0.034 7.5E-07 49.1 14.2 122 131-271 56-180 (198)
134 KOG1174 Anaphase-promoting com 96.9 0.41 8.8E-06 45.9 27.8 262 187-476 228-497 (564)
135 PRK15359 type III secretion sy 96.9 0.038 8.3E-07 46.1 13.5 90 275-369 30-120 (144)
136 COG4783 Putative Zn-dependent 96.9 0.53 1.2E-05 46.2 23.2 137 168-335 318-455 (484)
137 cd00189 TPR Tetratricopeptide 96.8 0.03 6.4E-07 41.8 11.1 95 116-220 3-97 (100)
138 cd00189 TPR Tetratricopeptide 96.8 0.033 7.2E-07 41.5 11.4 94 344-439 3-96 (100)
139 PF05843 Suf: Suppressor of fo 96.7 0.04 8.7E-07 51.7 13.8 140 311-456 6-150 (280)
140 PF12895 Apc3: Anaphase-promot 96.7 0.0055 1.2E-07 45.7 6.4 18 418-435 65-82 (84)
141 KOG0548 Molecular co-chaperone 96.7 0.75 1.6E-05 45.6 24.3 162 272-438 227-419 (539)
142 PF04840 Vps16_C: Vps16, C-ter 96.7 0.6 1.3E-05 44.5 26.7 104 377-499 178-281 (319)
143 PF09976 TPR_21: Tetratricopep 96.7 0.091 2E-06 43.8 14.3 126 343-475 14-143 (145)
144 KOG2053 Mitochondrial inherita 96.6 1.2 2.6E-05 47.0 24.1 50 168-218 55-104 (932)
145 PF12921 ATP13: Mitochondrial 96.6 0.032 7E-07 45.0 10.3 52 405-456 46-98 (126)
146 KOG3785 Uncharacterized conser 96.6 0.69 1.5E-05 43.4 23.8 193 241-441 292-491 (557)
147 COG5010 TadD Flp pilus assembl 96.5 0.57 1.2E-05 42.2 20.6 149 319-476 80-228 (257)
148 KOG1125 TPR repeat-containing 96.5 0.47 1E-05 47.4 19.3 221 115-361 321-562 (579)
149 KOG3060 Uncharacterized conser 96.5 0.59 1.3E-05 41.9 22.8 188 246-441 24-221 (289)
150 PLN02789 farnesyltranstransfer 96.5 0.85 1.8E-05 43.6 25.6 150 322-476 125-299 (320)
151 PF13170 DUF4003: Protein of u 96.4 0.43 9.3E-06 44.9 18.2 131 250-381 78-222 (297)
152 KOG4162 Predicted calmodulin-b 96.4 0.45 9.7E-06 49.2 19.1 214 180-406 312-544 (799)
153 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.16 3.5E-06 40.3 13.4 99 343-441 4-106 (119)
154 TIGR02795 tol_pal_ybgF tol-pal 96.3 0.095 2E-06 41.6 11.9 99 114-221 3-106 (119)
155 PF12895 Apc3: Anaphase-promot 96.3 0.0088 1.9E-07 44.6 5.3 80 319-401 3-83 (84)
156 KOG1125 TPR repeat-containing 96.2 1.5 3.3E-05 44.0 22.9 258 123-434 295-565 (579)
157 PF14938 SNAP: Soluble NSF att 96.1 1.3 2.7E-05 41.7 20.3 134 116-299 38-184 (282)
158 PF12921 ATP13: Mitochondrial 96.0 0.26 5.7E-06 39.8 12.6 96 190-315 1-97 (126)
159 PRK02603 photosystem I assembl 96.0 0.29 6.3E-06 42.2 14.0 84 342-426 36-121 (172)
160 KOG3941 Intermediate in Toll s 96.0 0.064 1.4E-06 48.5 9.5 86 342-427 68-174 (406)
161 PLN02789 farnesyltranstransfer 95.9 1.6 3.5E-05 41.7 25.1 139 123-281 47-188 (320)
162 KOG3941 Intermediate in Toll s 95.9 0.072 1.6E-06 48.2 9.7 87 372-458 63-170 (406)
163 KOG1174 Anaphase-promoting com 95.9 1.7 3.7E-05 41.9 25.4 281 124-440 207-500 (564)
164 PLN03088 SGT1, suppressor of 95.8 0.26 5.7E-06 48.0 14.2 99 353-456 14-113 (356)
165 KOG0553 TPR repeat-containing 95.8 0.092 2E-06 48.1 9.9 136 350-491 90-226 (304)
166 KOG1538 Uncharacterized conser 95.7 1.7 3.6E-05 44.3 19.0 90 343-441 749-847 (1081)
167 KOG3060 Uncharacterized conser 95.7 1.5 3.2E-05 39.4 22.0 190 284-480 26-221 (289)
168 PF03704 BTAD: Bacterial trans 95.6 0.092 2E-06 43.8 9.1 70 380-450 66-140 (146)
169 PF14559 TPR_19: Tetratricopep 95.5 0.049 1.1E-06 38.5 6.0 60 319-382 5-64 (68)
170 KOG4162 Predicted calmodulin-b 95.5 3.9 8.4E-05 42.7 27.1 279 126-439 240-541 (799)
171 PF13170 DUF4003: Protein of u 95.5 1.2 2.7E-05 41.9 16.7 147 269-417 60-223 (297)
172 PF12688 TPR_5: Tetratrico pep 95.4 0.77 1.7E-05 36.7 12.8 102 350-457 10-117 (120)
173 CHL00033 ycf3 photosystem I as 95.3 0.66 1.4E-05 39.7 13.6 95 342-437 36-139 (168)
174 KOG0624 dsRNA-activated protei 95.3 2.7 5.8E-05 39.6 25.5 294 121-440 46-370 (504)
175 KOG2041 WD40 repeat protein [G 95.0 5.1 0.00011 41.4 22.4 255 145-457 689-973 (1189)
176 KOG2053 Mitochondrial inherita 95.0 6 0.00013 42.1 39.0 216 85-338 24-259 (932)
177 PF03704 BTAD: Bacterial trans 95.0 0.72 1.6E-05 38.3 12.5 65 312-378 68-138 (146)
178 PLN03088 SGT1, suppressor of 94.9 0.33 7.3E-06 47.3 11.7 91 121-221 10-100 (356)
179 CHL00033 ycf3 photosystem I as 94.9 0.52 1.1E-05 40.3 11.6 61 271-333 37-100 (168)
180 PRK15363 pathogenicity island 94.8 2 4.4E-05 35.9 14.5 90 347-439 41-131 (157)
181 PRK02603 photosystem I assembl 94.8 1.1 2.5E-05 38.4 13.5 83 271-357 37-122 (172)
182 COG5107 RNA14 Pre-mRNA 3'-end 94.8 1.6 3.4E-05 42.6 14.9 146 270-422 398-546 (660)
183 KOG2041 WD40 repeat protein [G 94.7 6.2 0.00013 40.8 24.7 46 412-457 1022-1068(1189)
184 PF14559 TPR_19: Tetratricopep 94.4 0.15 3.3E-06 35.8 6.0 64 124-198 2-65 (68)
185 smart00299 CLH Clathrin heavy 94.4 2.4 5.3E-05 34.8 14.5 124 311-458 12-137 (140)
186 PF13432 TPR_16: Tetratricopep 94.3 0.2 4.3E-06 34.9 6.4 52 316-369 7-59 (65)
187 PRK15363 pathogenicity island 94.3 1.8 4E-05 36.1 12.7 50 245-296 46-95 (157)
188 KOG1538 Uncharacterized conser 94.3 7.4 0.00016 39.9 19.2 177 115-329 600-797 (1081)
189 PF13432 TPR_16: Tetratricopep 94.1 0.33 7.1E-06 33.8 7.1 53 168-221 9-61 (65)
190 KOG2796 Uncharacterized conser 94.0 1.6 3.4E-05 39.5 12.3 64 168-231 189-252 (366)
191 PRK10153 DNA-binding transcrip 93.9 6.1 0.00013 40.6 18.4 71 375-449 419-489 (517)
192 smart00299 CLH Clathrin heavy 93.8 2.5 5.4E-05 34.8 13.1 127 116-281 10-137 (140)
193 PF08631 SPO22: Meiosis protei 93.7 6 0.00013 37.1 26.3 168 168-376 5-192 (278)
194 PF10300 DUF3808: Protein of u 93.7 4 8.7E-05 41.4 16.7 151 247-402 201-373 (468)
195 PRK10153 DNA-binding transcrip 93.7 9.6 0.00021 39.2 21.0 146 264-415 332-490 (517)
196 PF10300 DUF3808: Protein of u 93.6 2.3 5E-05 43.2 14.8 167 113-296 188-373 (468)
197 PF09205 DUF1955: Domain of un 93.1 3.8 8.3E-05 33.0 15.4 136 245-407 13-151 (161)
198 PF12688 TPR_5: Tetratrico pep 93.1 3.8 8.2E-05 32.7 12.9 56 241-297 8-65 (120)
199 PF13414 TPR_11: TPR repeat; P 93.0 0.65 1.4E-05 32.7 7.3 65 147-220 2-67 (69)
200 PRK10866 outer membrane biogen 93.0 7.1 0.00015 35.7 21.5 81 193-280 35-115 (243)
201 KOG2280 Vacuolar assembly/sort 92.8 14 0.00031 38.7 19.2 84 343-436 686-769 (829)
202 PF13414 TPR_11: TPR repeat; P 92.8 0.81 1.8E-05 32.2 7.5 52 384-436 11-63 (69)
203 KOG1127 TPR repeat-containing 92.8 17 0.00037 39.5 24.5 122 312-438 498-623 (1238)
204 KOG2796 Uncharacterized conser 92.7 5.7 0.00012 36.1 13.7 147 173-335 166-316 (366)
205 KOG0624 dsRNA-activated protei 92.3 10 0.00022 35.9 21.4 203 123-370 165-370 (504)
206 PRK10803 tol-pal system protei 92.3 3.6 7.8E-05 38.1 12.9 96 270-369 144-245 (263)
207 COG5107 RNA14 Pre-mRNA 3'-end 92.3 4.7 0.0001 39.5 13.6 137 247-389 410-548 (660)
208 PF09205 DUF1955: Domain of un 92.3 5.1 0.00011 32.3 13.0 66 376-442 86-151 (161)
209 COG4235 Cytochrome c biogenesi 92.3 4.9 0.00011 37.2 13.3 116 338-456 153-270 (287)
210 PF13281 DUF4071: Domain of un 92.2 12 0.00026 36.4 19.4 80 196-282 146-230 (374)
211 PF04053 Coatomer_WDAD: Coatom 92.2 11 0.00025 37.7 17.1 158 241-436 268-427 (443)
212 KOG0553 TPR repeat-containing 92.0 2 4.4E-05 39.6 10.5 101 243-385 90-191 (304)
213 PF13371 TPR_9: Tetratricopept 92.0 1.4 2.9E-05 31.4 7.9 55 385-440 4-58 (73)
214 PF07035 Mic1: Colon cancer-as 91.9 7.1 0.00015 33.2 14.8 130 254-401 14-145 (167)
215 PRK10803 tol-pal system protei 91.8 3.4 7.4E-05 38.3 12.1 96 116-221 146-247 (263)
216 PRK10866 outer membrane biogen 91.7 10 0.00023 34.6 19.5 170 168-368 44-239 (243)
217 PF08631 SPO22: Meiosis protei 91.7 12 0.00025 35.1 23.6 167 124-305 4-192 (278)
218 PF13424 TPR_12: Tetratricopep 91.6 0.48 1E-05 34.4 5.2 62 149-218 6-73 (78)
219 PLN03098 LPA1 LOW PSII ACCUMUL 91.6 2.9 6.2E-05 41.3 11.7 57 313-369 82-140 (453)
220 PF13424 TPR_12: Tetratricopep 91.0 0.76 1.6E-05 33.3 5.7 26 412-437 47-72 (78)
221 PF04840 Vps16_C: Vps16, C-ter 90.9 15 0.00033 35.0 25.4 104 312-436 183-287 (319)
222 PF13371 TPR_9: Tetratricopept 90.7 1.2 2.6E-05 31.7 6.5 49 319-369 9-57 (73)
223 PLN03098 LPA1 LOW PSII ACCUMUL 90.6 4.5 9.9E-05 39.9 12.0 66 338-405 72-141 (453)
224 PF04053 Coatomer_WDAD: Coatom 90.3 5.9 0.00013 39.8 13.0 136 110-295 292-427 (443)
225 PF13762 MNE1: Mitochondrial s 90.2 5.3 0.00011 32.9 10.3 94 365-458 26-127 (145)
226 PF09613 HrpB1_HrpK: Bacterial 90.0 7 0.00015 32.8 11.0 118 192-326 8-130 (160)
227 KOG4570 Uncharacterized conser 89.8 1.4 3E-05 40.9 7.2 98 342-441 65-165 (418)
228 PF10602 RPN7: 26S proteasome 89.5 7.4 0.00016 33.6 11.4 99 192-296 37-139 (177)
229 KOG4570 Uncharacterized conser 89.3 9.4 0.0002 35.6 12.1 136 263-406 14-165 (418)
230 PF04184 ST7: ST7 protein; In 88.8 14 0.0003 37.0 13.6 71 278-350 268-340 (539)
231 KOG1585 Protein required for f 88.8 18 0.00038 32.7 16.7 86 114-217 32-117 (308)
232 KOG2280 Vacuolar assembly/sort 88.6 35 0.00076 35.9 25.0 111 371-499 679-789 (829)
233 TIGR02561 HrpB1_HrpK type III 88.6 7.7 0.00017 32.0 10.0 101 193-306 9-113 (153)
234 PRK15331 chaperone protein Sic 88.2 15 0.00032 31.1 12.8 87 350-439 46-133 (165)
235 COG3629 DnrI DNA-binding trans 87.8 7.3 0.00016 36.1 10.7 79 377-456 154-237 (280)
236 COG3898 Uncharacterized membra 87.5 29 0.00063 33.6 24.2 90 125-225 132-223 (531)
237 PF13176 TPR_7: Tetratricopept 87.2 1.6 3.4E-05 26.2 4.2 26 193-218 1-26 (36)
238 PRK11906 transcriptional regul 87.0 27 0.00058 34.8 14.5 170 114-295 252-432 (458)
239 PF13512 TPR_18: Tetratricopep 87.0 16 0.00034 30.1 11.1 48 247-296 23-73 (142)
240 PF07035 Mic1: Colon cancer-as 86.5 19 0.00041 30.6 14.6 100 326-437 15-115 (167)
241 COG1729 Uncharacterized protei 86.3 18 0.00039 33.1 12.1 94 271-369 144-243 (262)
242 COG4649 Uncharacterized protei 86.3 20 0.00043 30.5 15.1 138 145-298 56-195 (221)
243 PF07079 DUF1347: Protein of u 86.2 37 0.0008 33.6 21.9 139 246-389 18-180 (549)
244 PRK15331 chaperone protein Sic 85.9 19 0.00041 30.4 11.2 89 240-333 43-133 (165)
245 PF13929 mRNA_stabil: mRNA sta 85.1 23 0.0005 32.9 12.3 118 248-366 142-263 (292)
246 KOG2114 Vacuolar assembly/sort 85.0 51 0.0011 35.3 15.8 173 241-438 341-517 (933)
247 PF04097 Nic96: Nup93/Nic96; 84.8 57 0.0012 34.5 22.3 161 116-282 114-304 (613)
248 KOG0548 Molecular co-chaperone 84.6 48 0.001 33.5 25.3 48 350-398 367-414 (539)
249 PF13176 TPR_7: Tetratricopept 84.3 2.6 5.7E-05 25.2 4.2 26 413-438 1-26 (36)
250 KOG4555 TPR repeat-containing 84.0 20 0.00044 28.9 9.8 88 246-336 55-146 (175)
251 COG4700 Uncharacterized protei 83.9 28 0.0006 30.1 14.0 115 240-361 95-213 (251)
252 COG3629 DnrI DNA-binding trans 83.3 12 0.00027 34.7 9.9 73 311-385 158-236 (280)
253 PF10602 RPN7: 26S proteasome 83.2 29 0.00062 29.9 11.7 96 343-438 38-140 (177)
254 KOG1127 TPR repeat-containing 83.1 78 0.0017 34.8 21.1 180 248-439 472-658 (1238)
255 COG4235 Cytochrome c biogenesi 83.1 39 0.00084 31.5 12.9 101 114-221 157-257 (287)
256 PF04184 ST7: ST7 protein; In 82.9 55 0.0012 32.9 17.3 71 313-383 265-338 (539)
257 KOG4555 TPR repeat-containing 82.9 23 0.00051 28.6 10.3 85 319-406 57-145 (175)
258 PF02284 COX5A: Cytochrome c o 81.9 6 0.00013 30.2 5.9 47 174-220 28-74 (108)
259 COG4649 Uncharacterized protei 81.7 32 0.0007 29.3 13.8 126 319-444 72-200 (221)
260 PHA02875 ankyrin repeat protei 81.5 60 0.0013 32.3 19.2 207 168-411 11-230 (413)
261 PF07079 DUF1347: Protein of u 81.2 61 0.0013 32.2 31.4 344 116-485 49-455 (549)
262 PF13762 MNE1: Mitochondrial s 81.2 20 0.00042 29.7 9.3 89 341-429 39-133 (145)
263 PF11838 ERAP1_C: ERAP1-like C 80.9 53 0.0011 31.3 20.2 155 319-477 144-306 (324)
264 PF13374 TPR_10: Tetratricopep 80.6 4.7 0.0001 24.6 4.5 29 191-219 2-30 (42)
265 cd00923 Cyt_c_Oxidase_Va Cytoc 80.5 6.8 0.00015 29.6 5.8 50 171-220 22-71 (103)
266 PF02284 COX5A: Cytochrome c o 80.1 13 0.00029 28.4 7.2 60 359-419 28-87 (108)
267 PF13281 DUF4071: Domain of un 79.5 65 0.0014 31.5 19.3 162 274-441 146-335 (374)
268 cd00923 Cyt_c_Oxidase_Va Cytoc 79.3 18 0.00039 27.4 7.6 45 359-403 25-69 (103)
269 TIGR02561 HrpB1_HrpK type III 78.9 36 0.00078 28.2 10.9 17 353-369 56-72 (153)
270 COG1729 Uncharacterized protei 77.9 51 0.0011 30.3 11.7 93 240-335 147-245 (262)
271 PF13512 TPR_18: Tetratricopep 77.5 39 0.00084 27.8 12.1 56 314-369 19-75 (142)
272 KOG1920 IkappaB kinase complex 77.0 1.3E+02 0.0029 33.7 22.3 146 312-486 914-1062(1265)
273 KOG2114 Vacuolar assembly/sort 76.9 1.1E+02 0.0024 32.9 22.5 108 86-217 350-457 (933)
274 PF11207 DUF2989: Protein of u 76.6 52 0.0011 28.9 11.0 80 121-211 115-198 (203)
275 PF13428 TPR_14: Tetratricopep 76.1 6.7 0.00015 24.6 4.2 30 192-221 2-31 (44)
276 KOG1941 Acetylcholine receptor 76.0 77 0.0017 30.5 13.3 131 346-476 127-272 (518)
277 PF13428 TPR_14: Tetratricopep 76.0 9.5 0.00021 23.9 4.9 40 114-154 2-41 (44)
278 PF13374 TPR_10: Tetratricopep 75.9 7.4 0.00016 23.6 4.4 29 411-439 2-30 (42)
279 PF00637 Clathrin: Region in C 75.2 1.3 2.7E-05 36.7 0.8 53 312-365 13-66 (143)
280 PRK11906 transcriptional regul 74.7 97 0.0021 31.0 18.0 128 357-493 320-449 (458)
281 PF13525 YfiO: Outer membrane 73.7 63 0.0014 28.5 17.6 54 168-221 17-72 (203)
282 PF11848 DUF3368: Domain of un 73.3 14 0.00031 23.9 5.2 37 418-454 9-45 (48)
283 TIGR02508 type_III_yscG type I 72.6 30 0.00065 26.5 7.3 78 128-221 20-98 (115)
284 PHA02875 ankyrin repeat protei 72.4 1.1E+02 0.0023 30.5 16.3 179 168-377 44-231 (413)
285 KOG1920 IkappaB kinase complex 71.7 53 0.0011 36.6 11.7 118 145-293 932-1049(1265)
286 PF00637 Clathrin: Region in C 71.5 1.7 3.8E-05 35.8 0.8 129 346-495 12-140 (143)
287 PF10579 Rapsyn_N: Rapsyn N-te 71.0 13 0.00028 27.0 4.9 51 314-364 15-66 (80)
288 PF11848 DUF3368: Domain of un 70.3 17 0.00037 23.5 5.1 33 168-200 14-46 (48)
289 KOG2300 Uncharacterized conser 70.2 1.3E+02 0.0027 30.4 15.2 20 199-218 220-239 (629)
290 COG4105 ComL DNA uptake lipopr 69.1 93 0.002 28.4 20.2 186 146-369 33-232 (254)
291 KOG2297 Predicted translation 68.7 1.1E+02 0.0023 28.9 12.1 20 411-430 321-340 (412)
292 PF07721 TPR_4: Tetratricopept 68.2 9.5 0.00021 20.8 3.1 24 193-216 3-26 (26)
293 PF00515 TPR_1: Tetratricopept 67.7 17 0.00037 20.9 4.4 28 412-439 2-29 (34)
294 PF09613 HrpB1_HrpK: Bacterial 67.6 75 0.0016 26.8 12.2 48 319-368 24-71 (160)
295 KOG0543 FKBP-type peptidyl-pro 66.4 1.3E+02 0.0028 29.5 12.0 95 342-439 258-354 (397)
296 PF00515 TPR_1: Tetratricopept 66.0 20 0.00043 20.6 4.5 27 343-369 3-29 (34)
297 COG4455 ImpE Protein of avirul 66.0 54 0.0012 29.2 8.6 56 271-329 3-59 (273)
298 PF11207 DUF2989: Protein of u 65.9 50 0.0011 29.0 8.5 44 251-296 123-166 (203)
299 KOG0543 FKBP-type peptidyl-pro 64.8 1.3E+02 0.0029 29.3 11.8 79 376-457 257-335 (397)
300 PF13929 mRNA_stabil: mRNA sta 64.5 1.2E+02 0.0027 28.2 16.8 75 362-436 187-263 (292)
301 PF11663 Toxin_YhaV: Toxin wit 63.4 7.7 0.00017 31.3 2.8 32 316-350 105-137 (140)
302 TIGR03504 FimV_Cterm FimV C-te 63.2 15 0.00031 23.3 3.6 25 197-221 5-29 (44)
303 PF13431 TPR_17: Tetratricopep 62.9 12 0.00026 22.0 3.0 24 338-361 10-33 (34)
304 COG3118 Thioredoxin domain-con 62.9 1.3E+02 0.0029 28.1 14.8 117 319-440 148-265 (304)
305 TIGR03504 FimV_Cterm FimV C-te 62.6 20 0.00043 22.7 4.1 25 417-441 5-29 (44)
306 PRK10564 maltose regulon perip 62.5 20 0.00043 33.5 5.7 36 416-451 262-297 (303)
307 PF13525 YfiO: Outer membrane 60.5 1.2E+02 0.0026 26.7 19.2 42 417-458 147-190 (203)
308 COG4003 Uncharacterized protei 60.4 23 0.0005 25.6 4.5 36 118-154 36-71 (98)
309 PF07719 TPR_2: Tetratricopept 60.1 28 0.00061 19.8 4.4 27 413-439 3-29 (34)
310 KOG1550 Extracellular protein 59.6 2.3E+02 0.0049 29.6 15.9 181 249-441 227-427 (552)
311 KOG0276 Vesicle coat complex C 59.5 99 0.0021 32.0 10.2 96 319-436 651-746 (794)
312 KOG4077 Cytochrome c oxidase, 59.4 39 0.00084 27.1 6.0 45 176-220 69-113 (149)
313 KOG0550 Molecular chaperone (D 59.1 1.9E+02 0.0041 28.6 15.0 86 245-335 260-351 (486)
314 TIGR01503 MthylAspMut_E methyl 57.7 63 0.0014 32.2 8.5 157 131-308 71-250 (480)
315 COG5108 RPO41 Mitochondrial DN 57.6 68 0.0015 33.5 8.8 78 311-388 33-115 (1117)
316 COG4785 NlpI Lipoprotein NlpI, 57.4 1.4E+02 0.0031 26.6 11.9 39 448-491 239-277 (297)
317 COG4785 NlpI Lipoprotein NlpI, 56.6 1.5E+02 0.0032 26.6 11.8 170 169-370 85-266 (297)
318 KOG1130 Predicted G-alpha GTPa 56.2 2.1E+02 0.0046 28.2 12.6 267 158-475 27-340 (639)
319 PF09868 DUF2095: Uncharacteri 55.6 38 0.00082 26.4 5.2 38 118-156 66-103 (128)
320 PF13181 TPR_8: Tetratricopept 55.2 38 0.00081 19.3 4.4 27 413-439 3-29 (34)
321 KOG0991 Replication factor C, 55.0 1.7E+02 0.0036 26.6 15.0 138 351-498 169-325 (333)
322 COG3947 Response regulator con 54.9 1.9E+02 0.004 27.2 13.6 148 323-478 151-341 (361)
323 PF07163 Pex26: Pex26 protein; 53.3 1.8E+02 0.0039 27.1 10.0 85 313-399 90-181 (309)
324 COG2909 MalT ATP-dependent tra 52.6 3.5E+02 0.0075 29.6 25.3 228 202-436 426-684 (894)
325 PF13934 ELYS: Nuclear pore co 52.1 1.8E+02 0.0039 26.2 10.9 115 344-472 79-198 (226)
326 PF13174 TPR_6: Tetratricopept 51.5 27 0.00058 19.6 3.3 25 416-440 5-29 (33)
327 PRK10564 maltose regulon perip 51.3 31 0.00068 32.2 5.1 40 343-382 259-298 (303)
328 COG4455 ImpE Protein of avirul 49.7 1.1E+02 0.0025 27.2 7.9 76 116-200 4-81 (273)
329 KOG3807 Predicted membrane pro 49.4 1.8E+02 0.0039 27.7 9.6 16 206-221 231-246 (556)
330 smart00638 LPD_N Lipoprotein N 49.2 3.4E+02 0.0073 28.5 22.9 66 146-224 308-373 (574)
331 KOG4648 Uncharacterized conser 48.9 61 0.0013 30.9 6.5 78 350-437 106-184 (536)
332 PF11663 Toxin_YhaV: Toxin wit 48.6 19 0.00042 29.1 2.9 32 168-201 107-138 (140)
333 PF14689 SPOB_a: Sensor_kinase 48.5 29 0.00063 23.8 3.5 23 417-439 29-51 (62)
334 KOG0276 Vesicle coat complex C 47.8 2.3E+02 0.005 29.5 10.6 20 116-136 617-636 (794)
335 COG5159 RPN6 26S proteasome re 47.7 2.4E+02 0.0052 26.4 16.1 153 240-394 9-183 (421)
336 KOG4279 Serine/threonine prote 47.3 3.9E+02 0.0085 28.7 12.9 208 118-369 165-394 (1226)
337 KOG1550 Extracellular protein 46.7 3.6E+02 0.0079 28.2 18.6 115 248-371 263-394 (552)
338 PHA03100 ankyrin repeat protei 46.5 2.9E+02 0.0062 28.0 12.1 233 240-500 38-300 (480)
339 PF08311 Mad3_BUB1_I: Mad3/BUB 46.4 93 0.002 25.0 6.7 44 323-366 81-124 (126)
340 KOG2908 26S proteasome regulat 46.4 2.4E+02 0.0053 27.0 9.9 79 248-326 89-178 (380)
341 KOG2659 LisH motif-containing 46.2 1.8E+02 0.004 26.1 8.8 93 342-436 27-128 (228)
342 TIGR01228 hutU urocanate hydra 46.0 73 0.0016 32.0 6.9 70 204-294 207-280 (545)
343 smart00777 Mad3_BUB1_I Mad3/BU 44.6 1.5E+02 0.0032 23.9 7.4 44 322-365 80-123 (125)
344 cd00280 TRFH Telomeric Repeat 44.5 1.8E+02 0.0038 25.3 8.0 38 417-457 117-154 (200)
345 KOG2610 Uncharacterized conser 44.1 3E+02 0.0065 26.4 14.8 164 168-340 115-282 (491)
346 COG3118 Thioredoxin domain-con 44.0 2.8E+02 0.0061 26.1 17.9 52 168-220 146-197 (304)
347 PF10155 DUF2363: Uncharacteri 43.9 1.7E+02 0.0037 23.6 13.0 102 115-218 20-125 (126)
348 PF10366 Vps39_1: Vacuolar sor 43.9 1.1E+02 0.0023 23.9 6.4 27 413-439 41-67 (108)
349 KOG4567 GTPase-activating prot 43.7 1.3E+02 0.0029 28.3 7.7 41 398-438 265-305 (370)
350 PF11846 DUF3366: Domain of un 43.6 1E+02 0.0023 26.8 7.2 31 408-438 141-171 (193)
351 PF03745 DUF309: Domain of unk 42.6 1.1E+02 0.0024 21.0 7.1 47 168-214 11-62 (62)
352 PF09477 Type_III_YscG: Bacter 42.5 1.6E+02 0.0035 22.9 8.0 79 127-221 20-99 (116)
353 PF14689 SPOB_a: Sensor_kinase 42.4 42 0.00091 23.1 3.5 24 346-369 28-51 (62)
354 cd00245 Glm_e Coenzyme B12-dep 42.4 1.2E+02 0.0025 30.3 7.8 161 131-308 28-205 (428)
355 KOG4648 Uncharacterized conser 42.0 52 0.0011 31.3 5.0 48 386-435 107-155 (536)
356 COG4700 Uncharacterized protei 41.4 2.4E+02 0.0053 24.6 19.2 95 346-440 94-189 (251)
357 PRK15180 Vi polysaccharide bio 41.1 3.1E+02 0.0067 27.7 10.2 118 284-407 303-422 (831)
358 COG5108 RPO41 Mitochondrial DN 41.1 1.4E+02 0.003 31.4 8.1 90 346-438 33-130 (1117)
359 PF12796 Ank_2: Ankyrin repeat 40.7 1.4E+02 0.003 21.6 7.1 82 168-269 6-87 (89)
360 PF03745 DUF309: Domain of unk 40.6 87 0.0019 21.5 4.8 52 124-179 10-62 (62)
361 PRK14958 DNA polymerase III su 40.2 4.4E+02 0.0095 27.2 12.4 38 410-448 245-282 (509)
362 KOG2297 Predicted translation 39.9 3.3E+02 0.0072 25.8 19.5 118 265-396 219-341 (412)
363 PRK08691 DNA polymerase III su 39.4 4.7E+02 0.01 28.2 12.0 36 411-447 246-281 (709)
364 COG2178 Predicted RNA-binding 38.8 2.7E+02 0.0059 24.4 9.2 15 389-403 134-148 (204)
365 PF11846 DUF3366: Domain of un 38.3 1.6E+02 0.0034 25.6 7.5 54 353-406 120-174 (193)
366 PRK07003 DNA polymerase III su 38.1 5.7E+02 0.012 28.0 17.0 79 134-223 184-277 (830)
367 PHA02989 ankyrin repeat protei 38.0 4.6E+02 0.0099 26.8 12.0 12 258-269 20-31 (494)
368 PF02259 FAT: FAT domain; Int 37.9 3.7E+02 0.008 25.7 22.3 49 168-220 10-58 (352)
369 PF10579 Rapsyn_N: Rapsyn N-te 37.8 1.3E+02 0.0028 22.0 5.4 46 423-472 18-65 (80)
370 KOG2610 Uncharacterized conser 37.8 3.8E+02 0.0082 25.8 14.5 15 422-436 258-272 (491)
371 PF10345 Cohesin_load: Cohesin 37.8 5.2E+02 0.011 27.4 31.4 193 284-476 375-603 (608)
372 KOG1585 Protein required for f 37.6 3.3E+02 0.0071 25.0 19.3 71 414-494 193-266 (308)
373 KOG4077 Cytochrome c oxidase, 37.4 2.2E+02 0.0048 23.0 9.3 62 394-456 67-128 (149)
374 KOG4567 GTPase-activating prot 37.2 1.4E+02 0.0031 28.1 6.9 71 361-436 263-343 (370)
375 PRK09857 putative transposase; 35.3 2.9E+02 0.0063 26.1 9.1 65 381-446 211-275 (292)
376 PF06685 DUF1186: Protein of u 35.1 3.6E+02 0.0078 24.7 11.1 31 427-457 148-179 (249)
377 PRK11639 zinc uptake transcrip 34.9 2.7E+02 0.0058 23.7 8.1 47 346-392 30-76 (169)
378 KOG1157 Predicted guanosine po 34.8 81 0.0017 30.7 5.1 28 244-271 284-311 (543)
379 smart00028 TPR Tetratricopepti 34.0 75 0.0016 16.6 3.7 27 193-219 3-29 (34)
380 KOG2066 Vacuolar assembly/sort 33.8 6.5E+02 0.014 27.3 20.8 52 168-221 368-422 (846)
381 PF02607 B12-binding_2: B12 bi 33.2 61 0.0013 23.2 3.4 43 241-283 8-50 (79)
382 COG4105 ComL DNA uptake lipopr 33.1 3.9E+02 0.0084 24.5 20.1 49 247-296 47-97 (254)
383 PF02847 MA3: MA3 domain; Int 33.1 1.8E+02 0.004 22.4 6.4 22 346-367 7-28 (113)
384 PRK14951 DNA polymerase III su 33.1 5.5E+02 0.012 27.3 11.4 37 410-447 250-286 (618)
385 KOG0550 Molecular chaperone (D 33.0 5E+02 0.011 25.8 16.2 103 351-456 259-367 (486)
386 PF04190 DUF410: Protein of un 32.7 4E+02 0.0087 24.6 18.1 102 203-328 2-113 (260)
387 PLN03025 replication factor C 32.7 4.4E+02 0.0096 25.1 14.6 41 409-450 223-263 (319)
388 PF10475 DUF2450: Protein of u 32.7 4.3E+02 0.0092 24.9 11.5 114 154-295 104-222 (291)
389 PF02607 B12-binding_2: B12 bi 32.7 1E+02 0.0022 22.1 4.5 36 354-389 14-49 (79)
390 PF07163 Pex26: Pex26 protein; 32.5 4.2E+02 0.0092 24.8 9.8 80 168-257 95-181 (309)
391 KOG2659 LisH motif-containing 32.4 3.8E+02 0.0081 24.2 10.3 98 300-399 21-126 (228)
392 PRK07003 DNA polymerase III su 32.3 6.7E+02 0.015 27.5 11.8 35 410-445 245-279 (830)
393 PF04097 Nic96: Nup93/Nic96; 32.2 6.4E+02 0.014 26.8 15.2 49 233-282 110-158 (613)
394 COG0457 NrfG FOG: TPR repeat [ 32.0 3.1E+02 0.0068 23.1 28.0 195 241-440 66-265 (291)
395 PF11768 DUF3312: Protein of u 31.9 5.9E+02 0.013 26.3 11.6 21 417-437 500-520 (545)
396 COG1747 Uncharacterized N-term 31.7 5.9E+02 0.013 26.2 19.8 162 116-299 69-234 (711)
397 PF12862 Apc5: Anaphase-promot 30.9 2.3E+02 0.0049 21.2 7.8 17 319-335 55-71 (94)
398 PF08542 Rep_fac_C: Replicatio 30.6 1.6E+02 0.0035 21.6 5.5 49 146-204 3-51 (89)
399 COG0735 Fur Fe2+/Zn2+ uptake r 30.5 3E+02 0.0066 22.7 7.5 48 344-391 23-70 (145)
400 COG1466 HolA DNA polymerase II 30.4 3.9E+02 0.0084 25.7 9.4 85 180-267 151-241 (334)
401 PF08780 NTase_sub_bind: Nucle 29.8 2E+02 0.0043 23.1 6.1 88 131-231 7-97 (124)
402 TIGR01503 MthylAspMut_E methyl 29.2 1.6E+02 0.0035 29.5 6.3 76 249-334 29-115 (480)
403 KOG3636 Uncharacterized conser 29.2 5.9E+02 0.013 25.4 11.9 156 115-282 94-273 (669)
404 PF07575 Nucleopor_Nup85: Nup8 29.1 1.2E+02 0.0027 31.7 6.1 49 168-218 417-465 (566)
405 PF11838 ERAP1_C: ERAP1-like C 29.0 5E+02 0.011 24.5 12.0 84 131-225 147-236 (324)
406 PF10366 Vps39_1: Vacuolar sor 28.8 2.8E+02 0.0061 21.6 6.9 26 194-219 42-67 (108)
407 KOG0508 Ankyrin repeat protein 28.7 6.3E+02 0.014 25.6 16.1 286 120-453 121-442 (615)
408 PF06552 TOM20_plant: Plant sp 28.3 2.6E+02 0.0057 24.2 6.6 78 321-406 51-137 (186)
409 COG0735 Fur Fe2+/Zn2+ uptake r 28.2 3.4E+02 0.0075 22.4 7.8 64 362-426 7-70 (145)
410 KOG0989 Replication factor C, 28.2 5.3E+02 0.012 24.6 10.4 99 116-224 173-288 (346)
411 PHA03100 ankyrin repeat protei 27.6 6.5E+02 0.014 25.4 14.1 11 429-439 366-376 (480)
412 KOG2062 26S proteasome regulat 27.5 7.9E+02 0.017 26.6 11.0 159 277-440 67-239 (929)
413 COG0457 NrfG FOG: TPR repeat [ 27.4 3.8E+02 0.0082 22.6 26.2 221 248-479 37-265 (291)
414 PRK09462 fur ferric uptake reg 27.3 3.5E+02 0.0077 22.3 7.8 33 393-425 34-66 (148)
415 PF14669 Asp_Glu_race_2: Putat 27.3 4.3E+02 0.0093 23.2 14.6 19 264-282 3-21 (233)
416 COG0790 FOG: TPR repeat, SEL1 26.8 5.2E+02 0.011 24.0 16.1 152 247-407 54-222 (292)
417 COG2178 Predicted RNA-binding 26.8 4.4E+02 0.0095 23.1 10.6 18 422-439 132-149 (204)
418 COG2987 HutU Urocanate hydrata 26.6 2.3E+02 0.0049 28.3 6.7 24 355-378 239-262 (561)
419 PRK13342 recombination factor 26.3 6.6E+02 0.014 25.0 19.7 137 250-407 153-301 (413)
420 KOG0292 Vesicle coat complex C 26.0 3.4E+02 0.0073 29.8 8.2 129 168-335 655-783 (1202)
421 PF11768 DUF3312: Protein of u 26.0 7.5E+02 0.016 25.6 10.8 94 343-439 410-506 (545)
422 TIGR02508 type_III_yscG type I 25.9 3.1E+02 0.0068 21.2 8.2 15 320-334 20-34 (115)
423 KOG2063 Vacuolar assembly/sort 25.9 9.5E+02 0.021 26.7 21.4 117 194-318 507-638 (877)
424 KOG2066 Vacuolar assembly/sort 25.5 8.9E+02 0.019 26.3 21.8 59 117-184 360-420 (846)
425 smart00386 HAT HAT (Half-A-TPR 24.9 1.3E+02 0.0028 16.4 3.7 15 320-334 2-16 (33)
426 PRK14963 DNA polymerase III su 24.6 7.9E+02 0.017 25.4 11.0 31 344-375 245-275 (504)
427 PF02847 MA3: MA3 domain; Int 24.5 3.3E+02 0.0071 20.9 8.4 52 168-221 14-67 (113)
428 PF02259 FAT: FAT domain; Int 24.3 6.2E+02 0.013 24.0 17.1 66 374-439 144-212 (352)
429 PF10345 Cohesin_load: Cohesin 24.2 8.7E+02 0.019 25.7 30.1 164 116-296 62-251 (608)
430 PF02631 RecX: RecX family; I 24.1 3.6E+02 0.0078 21.2 11.8 109 170-293 6-116 (121)
431 COG2147 RPL19A Ribosomal prote 24.0 2.1E+02 0.0046 23.5 5.1 44 135-187 104-147 (150)
432 KOG1147 Glutamyl-tRNA syntheta 23.9 1.3E+02 0.0029 30.6 4.7 22 348-369 310-331 (712)
433 PRK14956 DNA polymerase III su 23.4 8.1E+02 0.018 25.1 11.3 35 343-377 250-284 (484)
434 PF09454 Vps23_core: Vps23 cor 23.2 2.7E+02 0.0058 19.4 5.7 53 146-207 6-58 (65)
435 KOG0989 Replication factor C, 23.1 6.7E+02 0.014 24.0 9.3 44 291-336 195-239 (346)
436 PRK14963 DNA polymerase III su 23.0 8.5E+02 0.018 25.1 11.9 35 411-446 242-276 (504)
437 cd08819 CARD_MDA5_2 Caspase ac 23.0 3.3E+02 0.0071 20.4 7.4 14 390-403 50-63 (88)
438 PRK14961 DNA polymerase III su 22.9 7.1E+02 0.015 24.2 10.6 22 354-375 258-279 (363)
439 PRK14958 DNA polymerase III su 22.9 8.6E+02 0.019 25.1 11.1 75 140-225 191-279 (509)
440 COG5159 RPN6 26S proteasome re 22.8 6.5E+02 0.014 23.7 11.8 33 276-309 10-42 (421)
441 cd07153 Fur_like Ferric uptake 22.8 2.2E+02 0.0047 22.2 5.2 47 347-393 6-52 (116)
442 TIGR02710 CRISPR-associated pr 22.8 7.4E+02 0.016 24.4 10.2 54 198-259 137-196 (380)
443 PF12862 Apc5: Anaphase-promot 22.6 3.3E+02 0.0072 20.3 7.0 23 417-439 47-69 (94)
444 TIGR01228 hutU urocanate hydra 22.6 3.1E+02 0.0066 27.8 6.8 23 355-377 230-252 (545)
445 PRK06645 DNA polymerase III su 22.5 8.7E+02 0.019 25.1 11.4 36 411-447 258-293 (507)
446 PRK14962 DNA polymerase III su 22.5 8.4E+02 0.018 24.9 14.8 56 353-408 255-316 (472)
447 smart00804 TAP_C C-terminal do 22.3 96 0.0021 21.5 2.5 16 206-221 40-55 (63)
448 PRK05414 urocanate hydratase; 22.3 3.2E+02 0.007 27.8 7.0 23 355-377 239-261 (556)
449 PHA02989 ankyrin repeat protei 22.0 8.6E+02 0.019 24.8 16.0 17 253-269 87-103 (494)
450 COG4003 Uncharacterized protei 21.8 1.6E+02 0.0035 21.5 3.6 26 196-221 36-61 (98)
451 PF04910 Tcf25: Transcriptiona 21.6 7.6E+02 0.017 24.1 10.0 82 116-206 106-194 (360)
452 PRK14700 recombination factor 21.3 7.1E+02 0.015 23.6 17.6 174 172-369 48-229 (300)
453 cd08819 CARD_MDA5_2 Caspase ac 21.0 3.6E+02 0.0079 20.1 7.5 68 132-212 20-87 (88)
454 PF08780 NTase_sub_bind: Nucle 20.9 4.4E+02 0.0096 21.1 8.2 73 250-326 6-80 (124)
455 PRK14956 DNA polymerase III su 20.8 9.2E+02 0.02 24.7 11.9 39 410-448 247-285 (484)
456 COG1747 Uncharacterized N-term 20.5 9.5E+02 0.021 24.8 19.5 152 247-406 79-235 (711)
457 cd07153 Fur_like Ferric uptake 20.4 2.7E+02 0.0059 21.6 5.3 47 382-428 6-52 (116)
458 PRK14136 recX recombination re 20.3 7.5E+02 0.016 23.5 14.5 46 177-225 198-243 (309)
459 COG1466 HolA DNA polymerase II 20.2 7.3E+02 0.016 23.8 9.2 82 364-447 150-244 (334)
460 PF01475 FUR: Ferric uptake re 20.0 2.1E+02 0.0045 22.5 4.5 49 345-393 11-59 (120)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-58 Score=492.36 Aligned_cols=388 Identities=13% Similarity=0.149 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHhhcC----ChHHHHHH---------------------HhcccChhhHHHHHHHHHHcCCChHHHHHHHH
Q 010739 84 EEFFEAIEELERMTR----EPSDILEE---------------------MNDRLSARELQLVLVYFSQEGRDSWCALEVFE 138 (502)
Q Consensus 84 ~~~~~a~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 138 (502)
+.+.+|+++|+.|.. .++.+... |.. +....|+.+|.+|++.|+. +.|.++|+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~-e~A~~lf~ 461 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDI-DGALRVLR 461 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCH-HHHHHHHH
Confidence 349999999999982 23322221 111 3344599999999999999 89999999
Q ss_pred HHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010739 139 WLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAV 217 (502)
Q Consensus 139 ~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m 217 (502)
.|.+.| .||..+||++|.++| +.|++++|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~--------k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCA--------KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH--------hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999 999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhccccHHHHHHHHHH
Q 010739 218 LSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRE--SGLKPEVYSYLIALTAVVKELNEFGKALRKLKG 295 (502)
Q Consensus 218 ~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~ 295 (502)
.+.|+.||..||+. ++.++++.|++++|.++|++|.. .|+.||.+||+++|.+|++. |++++|.++|++
T Consensus 534 ~~~Gv~PD~vTYns--------LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~-G~ldeA~elf~~ 604 (1060)
T PLN03218 534 RSKNVKPDRVVFNA--------LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA-GQVDRAKEVYQM 604 (1060)
T ss_pred HHcCCCCCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 99999999999999 99999999999999999999986 58999999999999999999 899999999999
Q ss_pred HHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739 296 YVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA 374 (502)
Q Consensus 296 m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (502)
|.+.|+.|+..+|+ .+|.+|++ |++++|.++|++|...|..+ |.++|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 605 M~e~gi~p~~~tyn-sLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 605 IHEYNIKGTPEVYT-IAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHcCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999 79999999 99999999999999999776 56899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010739 375 DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQ 454 (502)
Q Consensus 375 ~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 454 (502)
|..+|+++|.+|++.|++++|.++|++|...|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||++++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccccccHHHHHHHHhhhhhcCC-----chhHHHHH----HHhhcch
Q 010739 455 GLRKRIQQSGNVEAYLNLCKRLSDTSL-----IGPCLVYL----YIKKYKL 496 (502)
Q Consensus 455 ~~~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~li~~----y~~~g~~ 496 (502)
+|++ .|++++|.+++.+|.+.|+ ++++|+.+ |.+++++
T Consensus 763 a~~k----~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 763 ASER----KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHHH----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 9998 8999999999999988875 56678766 4555544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-58 Score=491.61 Aligned_cols=376 Identities=12% Similarity=0.076 Sum_probs=354.0
Q ss_pred ChHHHHHHHh-cccC-hhh--HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhh
Q 010739 99 EPSDILEEMN-DRLS-ARE--LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGD 174 (502)
Q Consensus 99 ~~~~~~~~~~-~~~~-~~~--~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 174 (502)
+...++.+|. .++. ++. ++.++.+|++.|.. +.|+++|+.|.. ||..+|+.+|.++| +.|++++
T Consensus 388 eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf~~M~~---pd~~Tyn~LL~a~~--------k~g~~e~ 455 (1060)
T PLN03218 388 DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFAKLIRN---PTLSTFNMLMSVCA--------SSQDIDG 455 (1060)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHHHHcCC---CCHHHHHHHHHHHH--------hCcCHHH
Confidence 3456677776 4443 332 78889999999999 899999998864 89999999999998 9999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHH
Q 010739 175 VVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAI 254 (502)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~ 254 (502)
|.++|++|.+.|+.||..+||+||++|+++|++++|.++|++|.+.|+.||..||+. ++.++++.|++++|+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna--------LI~gy~k~G~~eeAl 527 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA--------LIDGCARAGQVAKAF 527 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHCcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH--cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHH
Q 010739 255 KLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR--AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWA 331 (502)
Q Consensus 255 ~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m 331 (502)
++|++|.+.|+.||..||+++|.+|++. |++++|.++|++|.+ .|+.||..+|+ .||.+|++ |++++|.++|++|
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTyn-aLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVG-ALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHH-HHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999 899999999999965 78999999999 79999999 9999999999999
Q ss_pred HHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 010739 332 IQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKK 411 (502)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~ 411 (502)
.+.+.++ +..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++|.++++.|...|+.||.
T Consensus 606 ~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9998766 558999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC-----chhHH
Q 010739 412 KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL-----IGPCL 486 (502)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~l 486 (502)
.+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++ .|++++|.++|++|.+.|+ +++++
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k----~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE----GNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 8999999999999988775 56789
Q ss_pred HHHHHhhcchhhhhc
Q 010739 487 VYLYIKKYKLWIIKM 501 (502)
Q Consensus 487 i~~y~~~g~~~~~~~ 501 (502)
+++|++.|+++.+..
T Consensus 761 L~a~~k~G~le~A~~ 775 (1060)
T PLN03218 761 LVASERKDDADVGLD 775 (1060)
T ss_pred HHHHHHCCCHHHHHH
Confidence 999999999998764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.8e-54 Score=454.25 Aligned_cols=352 Identities=14% Similarity=0.117 Sum_probs=330.8
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
.|+.+|.+|++.|+. ++|+++|++|.+.| .||..+|+.++.+++ +.|.++.+.+++..|.+.|+.||..+
T Consensus 191 t~n~li~~~~~~g~~-~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~--------~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 191 SWGTIIGGLVDAGNY-REAFALFREMWEDGSDAEPRTFVVMLRASA--------GLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred eHHHHHHHHHHCcCH-HHHHHHHHHHHHhCCCCChhhHHHHHHHHh--------cCCcHHHHHHHHHHHHHhCCCcccee
Confidence 399999999999999 89999999999999 899999999999777 88999999999999999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL 273 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 273 (502)
||+||++|+++|++++|.++|++|. .+|+++||+ ++.+++..|++++|+++|++|.+.|+.||..||+
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~--------li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNS--------MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHH--------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999999995 468899999 9999999999999999999999999999999999
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHH
Q 010739 274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYI 352 (502)
Q Consensus 274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 352 (502)
++|.+|++. +++++|.+++.+|.+.|+.||..+|+ +||++|++ |++++|.++|++|.+ +|.++||+||.+|+
T Consensus 330 ~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~-~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 330 IMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANT-ALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehH-HHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHH
Confidence 999999999 89999999999999999999999998 79999999 999999999988753 57789999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739 353 CAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV-MNSLCKKKTLSWLLRGYIKGGHINDAA 431 (502)
Q Consensus 353 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~ 431 (502)
+.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|+.||++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999975 799999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc----CCchhHHHHHHHhhcchhhhhc
Q 010739 432 ETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT----SLIGPCLVYLYIKKYKLWIIKM 501 (502)
Q Consensus 432 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~li~~y~~~g~~~~~~~ 501 (502)
+++++| ++.||..+|++|+.+|+. .|+++.|.+.++++.+. ...+..|+++|++.|+++.+..
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRI----HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999876 789999999999999988 89999999988877432 2278899999999999987754
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-53 Score=450.04 Aligned_cols=376 Identities=13% Similarity=0.071 Sum_probs=215.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhh
Q 010739 85 EFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVK 163 (502)
Q Consensus 85 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~ 163 (502)
.+.+|+++|+.|..... ..+.+.+|+.++.+|++.++. +.|.+++..|.+.| .||..+||.+|+.++
T Consensus 102 ~~~~Al~~f~~m~~~~~-------~~~~~~t~~~ll~a~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~---- 169 (697)
T PLN03081 102 RHREALELFEILEAGCP-------FTLPASTYDALVEACIALKSI-RCVKAVYWHVESSGFEPDQYMMNRVLLMHV---- 169 (697)
T ss_pred CHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCcchHHHHHHHHHHh----
Confidence 38889999998862110 012234477777777777777 67777777777777 677777777777777
Q ss_pred hhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHH
Q 010739 164 KYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWK 243 (502)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~ 243 (502)
+.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+. ++..
T Consensus 170 ----k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~--------ll~a 233 (697)
T PLN03081 170 ----KCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV--------MLRA 233 (697)
T ss_pred ----cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHH--------HHHH
Confidence 77777777777777754 5777777777777777777777777777777777777666655 4444
Q ss_pred HHHhCcHHHHHHHHHHHHHcCCCC-------------------------------CHhHHHHHHHHHHhccccHHHHHHH
Q 010739 244 MMVEGKYVDAIKLVIHLRESGLKP-------------------------------EVYSYLIALTAVVKELNEFGKALRK 292 (502)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~g~~p-------------------------------~~~ty~~li~~~~~~~~~~~~a~~~ 292 (502)
++..|..+.+.+++..|.+.|+.| |.++||++|.+|++. |+.++|+++
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~-g~~~eA~~l 312 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH-GYSEEALCL 312 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhC-CCHHHHHHH
Confidence 444444444444444444444444 555555555555555 455555555
Q ss_pred HHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 010739 293 LKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG 371 (502)
Q Consensus 293 ~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 371 (502)
|++|.+.|+.||..||+ .++.+|++ |++++|.+++++|.+.|.++ |..+||+||.+|++.|++++|.++|++|.
T Consensus 313 f~~M~~~g~~pd~~t~~-~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--- 387 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFS-IMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMP--- 387 (697)
T ss_pred HHHHHHcCCCCCHHHHH-HHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence 55555555555555554 35555555 55555555555555554333 33455555555555555555555555553
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHH
Q 010739 372 KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-LGLYPEYMDRV 450 (502)
Q Consensus 372 ~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~ 450 (502)
+||..|||+||.+|++.|+.++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.|+..+|+
T Consensus 388 -~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 388 -RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred -CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 2455555555555555555555555555555555555555555555555555555555555555543 35555555555
Q ss_pred HHHHHHHccccccccHHHHHHHHhhhhhc--CCchhHHHHHHHhhcchhhh
Q 010739 451 AVLQGLRKRIQQSGNVEAYLNLCKRLSDT--SLIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 451 ~ll~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~li~~y~~~g~~~~~ 499 (502)
.+++++++ .|++++|.+++++|... ..++++|+.+|.+.|+++.+
T Consensus 467 ~li~~l~r----~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 467 CMIELLGR----EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 55555554 45555555555544221 11444555555555555443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-53 Score=459.42 Aligned_cols=371 Identities=16% Similarity=0.116 Sum_probs=334.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhh
Q 010739 86 FFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKK 164 (502)
Q Consensus 86 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~ 164 (502)
+++|.++|++|.. | ...+||.+|.+|++.|+. ++|+++|++|.+.| .||..||+.+|.+++
T Consensus 238 ~~~A~~lf~~m~~-~-----------d~~s~n~li~~~~~~g~~-~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~----- 299 (857)
T PLN03077 238 VVSARLVFDRMPR-R-----------DCISWNAMISGYFENGEC-LEGLELFFTMRELSVDPDLMTITSVISACE----- 299 (857)
T ss_pred HHHHHHHHhcCCC-C-----------CcchhHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-----
Confidence 5556666665541 1 134599999999999999 89999999999999 999999999999888
Q ss_pred hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739 165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~ 244 (502)
+.|+++.|.+++..|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+ ++.++
T Consensus 300 ---~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~--------li~~~ 364 (857)
T PLN03077 300 ---LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA--------MISGY 364 (857)
T ss_pred ---hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH--------HHHHH
Confidence 999999999999999999999999999999999999999999999999996 478999999 99999
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~ 323 (502)
++.|++++|+++|++|.+.|+.||..||+++|.+|++. +++++|.++++.|.+.|+.|+..+|| +||++|++ |++++
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n-~Li~~y~k~g~~~~ 442 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVAN-ALIEMYSKCKCIDK 442 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHH-HHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999 89999999999999999999999998 79999999 99999
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIE 403 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~ 403 (502)
|.++|++|. .+|.++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.+++..+.
T Consensus 443 A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 443 ALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 999998764 34678999999999999999999999999986 699999999988888888777777777776665
Q ss_pred HcCC------------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010739 404 VMNS------------------------------LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVL 453 (502)
Q Consensus 404 ~~~~------------------------------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 453 (502)
..|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 5543 5678889999999999999999999999999999999999999999
Q ss_pred HHHHccccccccHHHHHHHHhhhh-hcCC-----chhHHHHHHHhhcchhhhhc
Q 010739 454 QGLRKRIQQSGNVEAYLNLCKRLS-DTSL-----IGPCLVYLYIKKYKLWIIKM 501 (502)
Q Consensus 454 ~~~~~~~~~~~~~~~a~~~~~~m~-~~~~-----~~~~li~~y~~~g~~~~~~~ 501 (502)
.+|++ .|++++|.++|+.|. +.+. .++++|++|+|+|+++.+..
T Consensus 597 ~a~~~----~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 597 CACSR----SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHHhh----cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 99998 899999999999997 3343 56789999999999887753
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-52 Score=453.44 Aligned_cols=355 Identities=15% Similarity=0.125 Sum_probs=319.0
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS 192 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 192 (502)
..|+.+|.+|++.|+. ++|+++|++|...| .||..||+++|++++ ..+++..+.+++.+|.+.|+.||..
T Consensus 153 ~~~n~li~~~~~~g~~-~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 153 FSWNVLVGGYAKAGYF-DEALCLYHRMLWAGVRPDVYTFPCVLRTCG--------GIPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred eEHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhHHHHHHHHhC--------CccchhhHHHHHHHHHHcCCCcccc
Confidence 3499999999999999 89999999999999 999999999999776 8899999999999999999999999
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY 272 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 272 (502)
+||+||++|+++|++++|.++|++|. .||.++||+ ++.++++.|++++|+++|++|...|+.||..||
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~--------li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNA--------MISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHH--------HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 99999999999999999999999996 478899999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHH
Q 010739 273 LIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMY 351 (502)
Q Consensus 273 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 351 (502)
+++|.+|++. ++.+.+.+++..|.+.|+.||..+|| .||.+|++ |++++|.++|++|. .+|.++||+||.+|
T Consensus 292 ~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~d~~~~n-~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~ 364 (857)
T PLN03077 292 TSVISACELL-GDERLGREMHGYVVKTGFAVDVSVCN-SLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHhCCccchHHHH-HHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHH
Confidence 9999999999 89999999999999999999999998 79999999 99999999998864 35678999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739 352 ICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAA 431 (502)
Q Consensus 352 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 431 (502)
++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|...|..|+..+||.||.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888888888888877
Q ss_pred HHHHHHHHC------------------------------CCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC
Q 010739 432 ETLTKMLDL------------------------------GLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL 481 (502)
Q Consensus 432 ~l~~~m~~~------------------------------g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 481 (502)
++|++|.+. ++.||..||..+|.+|++ .|.++.+.++...+.+.|.
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~----~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR----IGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh----hchHHHhHHHHHHHHHhCC
Confidence 777776432 456777777777777766 5666666666666655443
Q ss_pred -----chhHHHHHHHhhcchhhhh
Q 010739 482 -----IGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 482 -----~~~~li~~y~~~g~~~~~~ 500 (502)
+.++||++|+|||+++.+.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHH
Confidence 6788999999999988764
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.4e-18 Score=170.91 Aligned_cols=299 Identities=14% Similarity=0.063 Sum_probs=205.1
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC---HHHHHHHHH
Q 010739 123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG---FSMIEKVIS 199 (502)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~y~~li~ 199 (502)
+...|++ +.|++.|+.+.+.+..+..++..+...+. ..|++++|...++.+.+.+..++ ..++..+..
T Consensus 45 ~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 45 FLLNEQP-DKAIDLFIEMLKVDPETVELHLALGNLFR--------RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHhcCCh-HHHHHHHHHHHhcCcccHHHHHHHHHHHH--------HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3456777 78888888888776446667777777666 78888888888888877543222 256778888
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH----hHHHHH
Q 010739 200 LYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV----YSYLIA 275 (502)
Q Consensus 200 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~l 275 (502)
.|.+.|++++|.++|+++.+.. .++..+++. +...+...|++++|.+.++.+...+..++. ..|..+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~--------la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ--------LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH--------HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 8888888888888888887642 223334444 556666678888888888888765433321 234455
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739 276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA 354 (502)
Q Consensus 276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 354 (502)
...+.+. ++.++|...++++.+.. |+.......+...|.+ |++++|.+.|+++....... ...+++.+..+|++.
T Consensus 187 a~~~~~~-~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 187 AQQALAR-GDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHc
Confidence 6666677 67888888888775432 3322222245566777 88888888887776653221 224677777888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHH
Q 010739 355 GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK---GGHINDAA 431 (502)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~ 431 (502)
|++++|...++++.+. .|+...+..+...+.+.|++++|.++++.+... .|+..+++.++..++. .|+.+++.
T Consensus 263 g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 263 GDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 8888888888887764 466666677777788888888888888766554 4777777777777664 45777888
Q ss_pred HHHHHHHHCCCCCCHH
Q 010739 432 ETLTKMLDLGLYPEYM 447 (502)
Q Consensus 432 ~l~~~m~~~g~~p~~~ 447 (502)
.++++|.+.+++|+..
T Consensus 339 ~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 339 LLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8888888777666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=5e-17 Score=178.80 Aligned_cols=350 Identities=13% Similarity=0.080 Sum_probs=234.8
Q ss_pred hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739 113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS 192 (502)
Q Consensus 113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 192 (502)
+..+..+...+.+.|+. +.|.+.|+.+.+....+...+..+...+. ..|++++|...++++.+.+ +.+..
T Consensus 465 ~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDL-AKAREAFEKALSIEPDFFPAAANLARIDI--------QEGNPDDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred cHHHHHHHHHHHhCCCH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHhC-cCcHH
Confidence 34477778888888888 78888888887766445556666666566 7888888888888887653 34677
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY 272 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 272 (502)
++..+...|.+.|+.++|..+|+++.+.+- .+...+.. +...+...|++++|.++++.+... .+.+..+|
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~--------l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 604 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALA--------LAQYYLGKGQLKKALAILNEAADA-APDSPEAW 604 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHH--------HHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHH
Confidence 888888888888888888888888866541 11122222 455566678888888888887754 34566778
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHH
Q 010739 273 LIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMY 351 (502)
Q Consensus 273 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~ 351 (502)
..+..++.+. +++++|...++.+.+.. ..+...+. .+...|.+ |++++|...|+++...... +..+|..+...+
T Consensus 605 ~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 679 (899)
T TIGR02917 605 LMLGRAQLAA-GDLNKAVSSFKKLLALQ-PDSALALL-LLADAYAVMKNYAKAITSLKRALELKPD--NTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 8888888888 78888888888775432 11223333 46666777 8888888888777665432 334777777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739 352 ICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAA 431 (502)
Q Consensus 352 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 431 (502)
...|++++|..+++.+.+.+ ..+...+..+...+...|++++|.+.++.+...+ |+..++..+...+.+.|+.++|.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 77888888888887777654 3355566666677777777777777777666544 44455666677777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcc
Q 010739 432 ETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYK 495 (502)
Q Consensus 432 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~ 495 (502)
+.++++.+.. ..+...+..+...+.. .|+.++|...++.+.+... +...+..+|.+.|+
T Consensus 757 ~~~~~~l~~~-~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 757 KTLEAWLKTH-PNDAVLRTALAELYLA----QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 7777766543 2345555555555555 5777777777766644321 23344555555554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.3e-18 Score=171.04 Aligned_cols=308 Identities=14% Similarity=0.034 Sum_probs=241.0
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC---ccccccCCCCchHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE---GDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~ty~~~~~~~~~~~~~~~ 244 (502)
..|++++|...|+++.+.+ +.+..++..+...|.+.|++++|..+++.+...+..++. ..+.. +...+
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~--------La~~~ 117 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE--------LGQDY 117 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------HHHHH
Confidence 5799999999999999863 345678999999999999999999999999875422211 12223 56666
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch---hchHHHHHHHHhc-Cc
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL---DGKNLGLIEKYQS-DL 320 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~~li~~~~~-g~ 320 (502)
...|++++|.++|+++.+. -.++..+++.+...+.+. |++++|.+.++.+.+.+-.+.. ..+...+...+.+ |+
T Consensus 118 ~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 7789999999999999875 345678899999999999 8999999999999765433321 1121235556777 99
Q ss_pred HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010739 321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLS 400 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~ 400 (502)
+++|.+.|+++...... +...+..+...|.+.|++++|.++|+++.+.+-.....+++.+..+++..|+.++|.+.++
T Consensus 196 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 196 LDAARALLKKALAADPQ--CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHHHHHHhHCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998876432 3458888999999999999999999999875433234678889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739 401 RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 401 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~ 480 (502)
.+.... |+...+..+...+.+.|++++|..+|+++.+. .|+..++..++..++.. ...|+.+++...++.|.+.+
T Consensus 274 ~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~-~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 274 RALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAE-AEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhc-cCCccchhHHHHHHHHHHHH
Confidence 987764 67777788999999999999999999998876 69999999999887631 11358888999888887655
Q ss_pred CchhHHHHHHHhhc
Q 010739 481 LIGPCLVYLYIKKY 494 (502)
Q Consensus 481 ~~~~~li~~y~~~g 494 (502)
+.+.-.+.+.+||
T Consensus 349 -~~~~p~~~c~~cg 361 (389)
T PRK11788 349 -LKRKPRYRCRNCG 361 (389)
T ss_pred -HhCCCCEECCCCC
Confidence 3333334455555
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=3.2e-17 Score=180.38 Aligned_cols=373 Identities=14% Similarity=0.014 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhh
Q 010739 84 EEFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWV 162 (502)
Q Consensus 84 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~ 162 (502)
+.+++|++.++++. ..|. ....+..+...+.+.|+. +.|..+|+.+.+.+..+...+..+...++
T Consensus 513 g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--- 578 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPK----------NLRAILALAGLYLRTGNE-EEAVAWLEKAAELNPQEIEPALALAQYYL--- 578 (899)
T ss_pred CCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCccchhHHHHHHHHHH---
Confidence 34888999998876 3333 123466777777788888 78888888887766456667777777666
Q ss_pred hhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHH
Q 010739 163 KKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAW 242 (502)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~ 242 (502)
..|++++|..+++.+.+. .+.+..+|..+...|.+.|++++|...|+++.+.+ +.+...+.. +..
T Consensus 579 -----~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~--------l~~ 643 (899)
T TIGR02917 579 -----GKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL--------LAD 643 (899)
T ss_pred -----HCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH--------HHH
Confidence 788888888888887664 34567778888888888888888888888877654 112222322 455
Q ss_pred HHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739 243 KMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL 321 (502)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~ 321 (502)
.+...|++++|.+.|+++... .+.+..++..+...+.+. |++++|.++++.+.+... .+...+. .+...|.. |++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~g~~ 719 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAA-KRTESAKKIAKSLQKQHP-KAALGFE-LEGDLYLRQKDY 719 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCc-CChHHHH-HHHHHHHHCCCH
Confidence 555678888888888877754 233467777788888888 678888888887755432 2333333 45556666 888
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR 401 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~ 401 (502)
++|.+.|+++....... .++..+...+.+.|++++|.+.++++.+.. ..+...++.+...|...|+.++|.+.++.
T Consensus 720 ~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 88888887777665333 356667777888888888888888877643 34566677777778888888888888877
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC
Q 010739 402 IEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL 481 (502)
Q Consensus 402 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 481 (502)
+.... ..+...++.+...+.+.|+ ++|.+.+++..+..- -+..++..+...+.. .|+.++|.+.++++.+.+.
T Consensus 796 ~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 796 VVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVE----KGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence 77655 3466777777888888888 778888887766431 233344445555555 6788888888877755332
Q ss_pred ----chhHHHHHHHhhcchhhhh
Q 010739 482 ----IGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 482 ----~~~~li~~y~~~g~~~~~~ 500 (502)
+...+...|.+.|+.+.+.
T Consensus 869 ~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 869 EAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHH
Confidence 5556777788888776654
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=6.2e-13 Score=123.08 Aligned_cols=240 Identities=11% Similarity=0.027 Sum_probs=187.4
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE 226 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 226 (502)
...+|.++|.++| +-...+.|.+++++-.....+.+..++|.+|.+-.-..+ .+++.+|.+..+.||.
T Consensus 206 T~et~s~mI~Gl~--------K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 206 TDETVSIMIAGLC--------KFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred CchhHHHHHHHHH--------HHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 6689999999999 889999999999999998899999999999987654332 7899999999999999
Q ss_pred ccccccCCCCchHHHHHHHHhCcHHHH----HHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH----HH
Q 010739 227 GDGEGQQGGPTGYLAWKMMVEGKYVDA----IKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY----VR 298 (502)
Q Consensus 227 ~ty~~~~~~~~~~~~~~~~~~g~~~~a----~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m----~~ 298 (502)
.|||+ ++....+.|+++.| ++++.+|++-|+.|...+|..+|..+++.++....+..++.+. .-
T Consensus 274 ~TfNa--------lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 274 FTFNA--------LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhHHH--------HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 99999 88888888876654 6788999999999999999999999999943333455555544 22
Q ss_pred cCCCCchhchHH---HHHHHHhc-CcHHhHHHHHHHHHHcC---CCCch---HhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 299 AGSIAELDGKNL---GLIEKYQS-DLLADGSRLSSWAIQEG---GSSLY---GVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 299 ~g~~p~~~~~~~---~li~~~~~-g~~~~a~~~~~~m~~~~---~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
..+.|-..+-|. .-+..|.+ .+.+-|.++-.-..... ..+++ -+-|..+....|+....+.-+..|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334443322221 34455667 88888888765443322 11112 2345668888999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 369 LVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 369 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
-.-+-|+..+...++.+....+.++-..++|..+..+|
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 88889999999999999999999998888887665555
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.65 E-value=2.8e-12 Score=134.47 Aligned_cols=333 Identities=11% Similarity=0.024 Sum_probs=244.0
Q ss_pred HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739 86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK 164 (502)
Q Consensus 86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~ 164 (502)
+.+|..+++... ..|. .++.+..+..+....|++ +.|.+.|+.+.+....+...+..+...+.
T Consensus 58 ~~~A~~l~~~~l~~~p~----------~~~~l~~l~~~~l~~g~~-~~A~~~l~~~l~~~P~~~~a~~~la~~l~----- 121 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKN----------GRDLLRRWVISPLASSQP-DAVLQVVNKLLAVNVCQPEDVLLVASVLL----- 121 (656)
T ss_pred cchhHHHhHHHHHhCCC----------chhHHHHHhhhHhhcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHH-----
Confidence 777777776654 2232 133355566777789999 89999999999887446677777777666
Q ss_pred hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739 165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~ 244 (502)
..|+.++|...+++..+. -+.+...+..+...+...|++++|...++.+.... |+...... ....+
T Consensus 122 ---~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~--------~~~~l 187 (656)
T PRK15174 122 ---KSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIA--------TCLSF 187 (656)
T ss_pred ---HcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHH--------HHHHH
Confidence 899999999999999875 23356788999999999999999999999886654 22111111 12235
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~ 323 (502)
...|++++|...++.+....-.++...+..+..++.+. |+.++|...+++..... |+.......+-..|.. |+.++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchh
Confidence 66799999999999987764344555556667788888 89999999999986543 4433322246677888 99886
Q ss_pred ----HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 010739 324 ----GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 324 ----a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|...|++...... .+...+..+...+.+.|++++|...+++..+. .|+ ...+..+-.++...|++++|.+.
T Consensus 265 A~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 265 AKLQAAEHWRHALQFNS--DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7899988877543 35568999999999999999999999998864 455 34555566899999999999999
Q ss_pred HHHHHHcCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739 399 LSRIEVMNSLCKKKT-LSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR 457 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 457 (502)
++.+...+ |+... +..+...+...|+.++|.+.|++..+..-.--...|...+.++.
T Consensus 341 l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 341 FVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 98887654 44433 33356778999999999999999887642222334444555553
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.63 E-value=4.9e-12 Score=132.65 Aligned_cols=330 Identities=8% Similarity=-0.004 Sum_probs=246.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
...++..+.+.|+. ..|+.+++.......-+...+..+..+.. ..|+.++|...|+++.+. -+-+...+.
T Consensus 45 ~~~~~~~~~~~g~~-~~A~~l~~~~l~~~p~~~~~l~~l~~~~l--------~~g~~~~A~~~l~~~l~~-~P~~~~a~~ 114 (656)
T PRK15174 45 IILFAIACLRKDET-DVGLTLLSDRVLTAKNGRDLLRRWVISPL--------ASSQPDAVLQVVNKLLAV-NVCQPEDVL 114 (656)
T ss_pred HHHHHHHHHhcCCc-chhHHHhHHHHHhCCCchhHHHHHhhhHh--------hcCCHHHHHHHHHHHHHh-CCCChHHHH
Confidence 56778888999999 89999999998887234444444445466 789999999999999875 233567888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIA 275 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 275 (502)
.+...+.+.|++++|...+++..+.. |+...... .+...+...|++++|...++.+....-.+ ...+..+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~-------~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~ 184 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFA-------LHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC 184 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH-------HHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 89999999999999999999998753 44322111 14445566799999999999887653222 2233233
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739 276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA 354 (502)
Q Consensus 276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 354 (502)
..+.+. |++++|...++.+.+..-.++...+. .+...+.. |+.++|.+.|++....... +...+..+-..|.+.
T Consensus 185 -~~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~-~l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~~l~~~ 259 (656)
T PRK15174 185 -LSFLNK-SRLPEDHDLARALLPFFALERQESAG-LAVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGLAYYQS 259 (656)
T ss_pred -HHHHHc-CCHHHHHHHHHHHHhcCCCcchhHHH-HHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc
Confidence 346777 79999999999885553223333332 34566777 9999999999998876533 456888899999999
Q ss_pred CChHH----HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010739 355 GRGLE----AERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIND 429 (502)
Q Consensus 355 g~~~~----A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 429 (502)
|++++ |...|++..+. .| +...+..+-..+...|++++|...++...... ..+...+..+...|.+.|++++
T Consensus 260 G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred CCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 99986 89999998864 45 45677788899999999999999999887654 2245667778999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-HHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 430 AAETLTKMLDLGLYPEYMDRVA-VLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 430 A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
|...|+++... .|+...+.. +..++.. .|+.++|...++...+.
T Consensus 337 A~~~l~~al~~--~P~~~~~~~~~a~al~~----~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 337 ASDEFVQLARE--KGVTSKWNRYAAAALLQ----AGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 99999998875 355544332 3344445 79999999999887443
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1e-11 Score=115.18 Aligned_cols=337 Identities=12% Similarity=0.071 Sum_probs=238.1
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
+|..+|.++||.... +.|.+++.+-.... +++..+||.+|.+.. - -.-.+++.+|....+.||..|
T Consensus 209 t~s~mI~Gl~K~~~~-ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------~----~~~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSL-ERARELYKEHRAAKGKVYREAFNGLIGASS--------Y----SVGKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred hHHHHHHHHHHHHhH-HHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------h----hccHHHHHHHHHhhcCCchHh
Confidence 399999999999999 89999999988655 899999999998443 1 112788999999999999999
Q ss_pred HHHHHHHHHhcCcHHH----HHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHH-HHHHHHHHHH----cC
Q 010739 194 IEKVISLYWEMEKKER----AVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVD-AIKLVIHLRE----SG 264 (502)
Q Consensus 194 y~~li~~~~~~g~~~~----A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~-a~~~~~~m~~----~g 264 (502)
+|+++.+.++.|+++. |.+++.+|++.|+.|...+|.- ++.+.++.++..+ |..+..++.. +.
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~--------iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHL--------IIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHH--------HHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 9999999999998865 5678899999999999999988 8889998877644 4444444443 33
Q ss_pred CCC----CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCC-----CCc--hhchHHHHHHHHhc-CcHHhHHHHHHHHH
Q 010739 265 LKP----EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGS-----IAE--LDGKNLGLIEKYQS-DLLADGSRLSSWAI 332 (502)
Q Consensus 265 ~~p----~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~-----~p~--~~~~~~~li~~~~~-g~~~~a~~~~~~m~ 332 (502)
++| |..-|.+.+..|.+. .+.+-|.++. .+.+.|- .|+ ...|+.-+....+. ..++.-...++.|+
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l-~d~~LA~~v~-~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSL-RDLELAYQVH-GLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHh-hhHHHHHHHH-HHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 345677888899988 6788887744 4433332 222 22344345666566 77888888888887
Q ss_pred HcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--h---H--------HHHH
Q 010739 333 QEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN-EG--S---A--------VSRL 398 (502)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~-~~--~---~--------a~~l 398 (502)
-.-..+.+ .+...++.+..-+|.++-.-++|..|+..|-.-+...---++.-+|+.. .. . + |..+
T Consensus 426 P~~y~p~~-~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 426 PSAYFPHS-QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred cceecCCc-hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 76633322 4777788888889999999999999988774444433333444444433 11 0 0 1111
Q ss_pred H-------HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHH---HHHHHHHccccccccHH
Q 010739 399 L-------SRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG-LYPEYMDRV---AVLQGLRKRIQQSGNVE 467 (502)
Q Consensus 399 ~-------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~---~ll~~~~~~~~~~~~~~ 467 (502)
+ ..|+ .........+...-.+.+.|+.++|.++|....+.| -.|-....+ -++++-.. .+...
T Consensus 505 ~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~----~~sps 578 (625)
T KOG4422|consen 505 KEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV----SNSPS 578 (625)
T ss_pred HHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh----cCCHH
Confidence 1 2233 334456677777788899999999999999997665 224444444 45555444 67888
Q ss_pred HHHHHHhhhhhcCC
Q 010739 468 AYLNLCKRLSDTSL 481 (502)
Q Consensus 468 ~a~~~~~~m~~~~~ 481 (502)
.|+..++.|...++
T Consensus 579 qA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 579 QAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHcCc
Confidence 88888887755443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.56 E-value=2.3e-10 Score=120.21 Aligned_cols=364 Identities=10% Similarity=-0.026 Sum_probs=247.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+...-..+.+.|++ +.|++.|+...+.. |+...|..+-.++. ..|++++|+..++...+.. +-+...|.
T Consensus 130 ~k~~G~~~~~~~~~-~~Ai~~y~~al~~~-p~~~~~~n~a~~~~--------~l~~~~~Ai~~~~~al~l~-p~~~~a~~ 198 (615)
T TIGR00990 130 LKEKGNKAYRNKDF-NKAIKLYSKAIECK-PDPVYYSNRAACHN--------ALGDWEKVVEDTTAALELD-PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhcC-CchHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 44555677888999 89999999887665 67777777766666 7899999999999887753 23566888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC----------------------------CCCCC-cc------------------
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRG----------------------------IAYAE-GD------------------ 228 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~----------------------------~~p~~-~t------------------ 228 (502)
.+-.+|...|++++|..-|......+ ..|.. ..
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 89999999999999977654432111 01110 00
Q ss_pred -ccc----cCCCCchHHHHHH-----HHhCcHHHHHHHHHHHHHcC-CCCC-HhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739 229 -GEG----QQGGPTGYLAWKM-----MVEGKYVDAIKLVIHLRESG-LKPE-VYSYLIALTAVVKELNEFGKALRKLKGY 296 (502)
Q Consensus 229 -y~~----~~~~~~~~~~~~~-----~~~g~~~~a~~~~~~m~~~g-~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m 296 (502)
+.. +.......+..+. ...+++++|++.|+.....+ ..|+ ...|+.+-..+... |++++|+..+++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~ka 357 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKS 357 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 000 0000000011110 11368999999999988764 3444 45677777777778 7999999998887
Q ss_pred HHcCCCCchh-chHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739 297 VRAGSIAELD-GKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA 374 (502)
Q Consensus 297 ~~~g~~p~~~-~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (502)
.+. .|+.. .|. .+...+.. |++++|...|++....... +...|..+...+...|++++|...|++..+. .|
T Consensus 358 l~l--~P~~~~~~~-~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P 430 (615)
T TIGR00990 358 IEL--DPRVTQSYI-KRASMNLELGDPDKAEEDFDKALKLNSE--DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DP 430 (615)
T ss_pred HHc--CCCcHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--Cc
Confidence 544 45433 332 45566777 9999999999988776433 3458888999999999999999999998864 45
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 010739 375 D-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY--PEYMDRVA 451 (502)
Q Consensus 375 ~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ 451 (502)
+ ...+..+-..+.+.|++++|...++...... ..+...|+.+...+...|++++|.+.|++.....-. +.......
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 4 5556666688899999999999998876543 335778888999999999999999999998764321 11111111
Q ss_pred HHHHHHccccccccHHHHHHHHhhhhhcC----CchhHHHHHHHhhcchhhh
Q 010739 452 VLQGLRKRIQQSGNVEAYLNLCKRLSDTS----LIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 452 ll~~~~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~li~~y~~~g~~~~~ 499 (502)
++.....-.+..|++++|...+++..... .....+...|.+.|+++.+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 11111100112588999999988763322 1345678888888887765
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=3.8e-10 Score=118.57 Aligned_cols=350 Identities=15% Similarity=0.054 Sum_probs=241.3
Q ss_pred HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739 86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK 164 (502)
Q Consensus 86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~ 164 (502)
+++|++.|++.. ..|+ +..|..+-.+|.+.|++ +.|++.++...+....+...|..+-.++.
T Consensus 143 ~~~Ai~~y~~al~~~p~-----------~~~~~n~a~~~~~l~~~-~~Ai~~~~~al~l~p~~~~a~~~~a~a~~----- 205 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPD-----------PVYYSNRAACHNALGDW-EKVVEDTTAALELDPDYSKALNRRANAYD----- 205 (615)
T ss_pred HHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHhCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHH-----
Confidence 667777776644 2222 33477778888999999 89999999998877446667777777666
Q ss_pred hhhhhccHhhHHHHHHHHhhCC-C---------------------------C----CCHHHHHHH---------------
Q 010739 165 YIEEERGVGDVVDLLVDMDCVG-L---------------------------K----PGFSMIEKV--------------- 197 (502)
Q Consensus 165 ~~~~~~~~~~a~~~~~~m~~~g-~---------------------------~----p~~~~y~~l--------------- 197 (502)
..|++++|+.-|......+ + . |........
T Consensus 206 ---~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 206 ---GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred ---HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 7888888876554332111 0 0 000000000
Q ss_pred ------------HHHH------HhcCcHHHHHHHHHHHHHcC-CCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHH
Q 010739 198 ------------ISLY------WEMEKKERAVLFVKAVLSRG-IAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLV 257 (502)
Q Consensus 198 ------------i~~~------~~~g~~~~A~~l~~~m~~~~-~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~ 257 (502)
+..+ ...+++++|.+.|+...+.+ ..|+.. .|.. +...+...|++++|+..|
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~--------lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNL--------RGTFKCLKGKHLEALADL 354 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHH--------HHHHHHHcCCHHHHHHHH
Confidence 0000 12357889999999988765 233321 1111 333344579999999999
Q ss_pred HHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHc
Q 010739 258 IHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQE 334 (502)
Q Consensus 258 ~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~ 334 (502)
++.... .|+ ...|..+-..+... |++++|...+++..+. .|+ ...+. .+...|.. |++++|.+.|++....
T Consensus 355 ~kal~l--~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~--~p~~~~~~~-~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 355 SKSIEL--DPRVTQSYIKRASMNLEL-GDPDKAEEDFDKALKL--NSEDPDIYY-HRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 998764 565 45777888888888 8999999999988554 333 34443 46666777 9999999999988776
Q ss_pred CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-
Q 010739 335 GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKK- 412 (502)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~- 412 (502)
... +...|..+...+.+.|++++|+..|++..+. .| +...|+.+-..+...|++++|.+.++.........+..
T Consensus 429 ~P~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 429 DPD--FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred Ccc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 533 4457888888999999999999999998754 34 46677888889999999999999998876654221111
Q ss_pred -----HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 413 -----TLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY-MDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 413 -----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
.++.....+...|++++|.+++++..... |+. ..+..+...+.. .|+.++|++.+++..+.
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~----~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQ----QGDVDEALKLFERAAEL 571 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence 11222233445699999999999987654 443 457777777776 79999999999887543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.51 E-value=2.1e-10 Score=128.64 Aligned_cols=357 Identities=12% Similarity=0.008 Sum_probs=208.3
Q ss_pred hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHh-----hhhhhhhhhhccHhhHHHHHHHHhhC
Q 010739 113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMC-----SWVKKYIEEERGVGDVVDLLVDMDCV 185 (502)
Q Consensus 113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~-----~~~~~~~~~~~~~~~a~~~~~~m~~~ 185 (502)
+..+..+-..+.+.|+. ++|.+.|+...+.. .++...|..++...- ....... +.|++++|...|++..+.
T Consensus 303 ~~a~~~Lg~~~~~~g~~-~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDR-ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL-KANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHh
Confidence 34477888899999999 89999999998766 222223333322100 0000111 789999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHH---------------------
Q 010739 186 GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWK--------------------- 243 (502)
Q Consensus 186 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~--------------------- 243 (502)
. +.+...+..+-..|.+.|++++|++.|++..+.. |+.. .+.. +...
T Consensus 381 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~--------L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 381 D-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRG--------LANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 3 3466788889999999999999999999998654 3321 1110 1111
Q ss_pred ---------------------HHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCC
Q 010739 244 ---------------------MMVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGS 301 (502)
Q Consensus 244 ---------------------~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~ 301 (502)
+...|++++|++.|++..+. .|+ ...+..+...+.+. |+.++|...+++..+.
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~-G~~~~A~~~l~~al~~-- 524 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQA-GQRSQADALMRRLAQQ-- 524 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc--
Confidence 11234555555555544432 222 23334444444444 4555555555544321
Q ss_pred CCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHh---------HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 010739 302 IAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGV---------VHERLLAMYICAGRGLEAERQLWEMKLVG 371 (502)
Q Consensus 302 ~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g 371 (502)
.|+.......+...+.. ++.++|...++.+....... +.. .+-.+...+...|+.++|..+++.
T Consensus 525 ~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~-~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----- 598 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS-NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----- 598 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh-hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----
Confidence 11111100011112223 55555555444322111100 000 011233445566777777766651
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 010739 372 KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY-MDRV 450 (502)
Q Consensus 372 ~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~ 450 (502)
...+...+..+-..+...|+.++|.+.++...... ..+...+..+...|...|+.++|.+.++..... .|+. .++.
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~ 675 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQR 675 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence 23344455666678888999999999998887764 336778888999999999999999999977653 4443 3344
Q ss_pred HHHHHHHccccccccHHHHHHHHhhhhhcCCc-----hhH-----HHHHHHhhcchhhhh
Q 010739 451 AVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLI-----GPC-----LVYLYIKKYKLWIIK 500 (502)
Q Consensus 451 ~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~-----li~~y~~~g~~~~~~ 500 (502)
.+-.++.. .|+.++|...++.+.....- .++ +-..|.+.|+.+.+.
T Consensus 676 ~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 676 RVALAWAA----LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHHHHh----CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 45555555 78999999999888553211 122 244677777776653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.50 E-value=1.1e-09 Score=117.42 Aligned_cols=375 Identities=9% Similarity=-0.015 Sum_probs=224.6
Q ss_pred HHHHHHHHHhhcC-ChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739 86 FFEAIEELERMTR-EPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK 164 (502)
Q Consensus 86 ~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~ 164 (502)
.++|++++.+... .|. .+..+..+-..+.+.|++ ..|.++|+...+....+...+..+...+.
T Consensus 31 ~~~A~~~~~~~~~~~~~----------~a~~~~~lA~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~l~----- 94 (765)
T PRK10049 31 DAEVITVYNRYRVHMQL----------PARGYAAVAVAYRNLKQW-QNSLTLWQKALSLEPQNDDYQRGLILTLA----- 94 (765)
T ss_pred HHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 6667666666541 221 122255566666666666 56666666666554334444444444444
Q ss_pred hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc-------cCCC--
Q 010739 165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG-------QQGG-- 235 (502)
Q Consensus 165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~-------~~~~-- 235 (502)
..|+.++|...+++..+. .+.+.. +..+-..+.+.|+.++|...+++..+.. |+...... ..+.
T Consensus 95 ---~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 95 ---DAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred ---HCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChH
Confidence 566666666666666554 223344 6666666666666666666666665543 32211100 0000
Q ss_pred ----------------------CchHHHHHHHH-----hCcH---HHHHHHHHHHHHc-CCCCCHh-HHH----HHHHHH
Q 010739 236 ----------------------PTGYLAWKMMV-----EGKY---VDAIKLVIHLRES-GLKPEVY-SYL----IALTAV 279 (502)
Q Consensus 236 ----------------------~~~~~~~~~~~-----~g~~---~~a~~~~~~m~~~-g~~p~~~-ty~----~li~~~ 279 (502)
+....+..... .+++ ++|++.++.+... .-.|+.. .+. ..+.++
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 00000000000 1223 5677777777654 2233321 111 113445
Q ss_pred HhccccHHHHHHHHHHHHHcCC-CCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCC--chHhHHHHHHHHHHHcC
Q 010739 280 VKELNEFGKALRKLKGYVRAGS-IAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSS--LYGVVHERLLAMYICAG 355 (502)
Q Consensus 280 ~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g 355 (502)
... ++.++|+..|+.+.+.+- .|+.... .+...|.. |+.++|...|+++....... .....+..+..++.+.|
T Consensus 248 l~~-g~~~eA~~~~~~ll~~~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 248 LAR-DRYKDVISEYQRLKAEGQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHh-hhHHHHHHHHHHhhccCCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 566 689999999999866653 2433222 24556777 99999999998876544221 11235666777888899
Q ss_pred ChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 356 RGLEAERQLWEMKLVG-----------KEADG---DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 356 ~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
++++|..+++++.+.. -.|+. ..+..+...+...|+.++|.++++.+.... .-+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 9999999999888652 12332 233445578888899999999998887654 33577777788899
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhc
Q 010739 422 IKGGHINDAAETLTKMLDLGLYPEYMD-RVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKY 494 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g 494 (502)
...|+.++|++.+++.+.. .||... +......+.+ .|++++|...++.+.... ..++.+.-+.|.-
T Consensus 404 ~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~----~~~~~~A~~~~~~ll~~~-Pd~~~~~~~~~~~ 470 (765)
T PRK10049 404 QARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD----LQEWRQMDVLTDDVVARE-PQDPGVQRLARAR 470 (765)
T ss_pred HhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999987764 466433 3333334444 688999999999887765 5566666555543
No 19
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.6e-13 Score=91.95 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739 409 CKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 409 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (502)
||..+||++|++|++.|++++|.++|++|++.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 20
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=2.1e-13 Score=91.37 Aligned_cols=50 Identities=28% Similarity=0.236 Sum_probs=43.9
Q ss_pred chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010739 339 LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS 388 (502)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 388 (502)
+|+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 46788999999999999999999999999999999999999999988875
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.45 E-value=3.7e-09 Score=113.47 Aligned_cols=360 Identities=10% Similarity=-0.002 Sum_probs=237.2
Q ss_pred cChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC
Q 010739 111 LSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG 190 (502)
Q Consensus 111 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 190 (502)
+++....-.+......|+. ++|++++.........+...+..+...+. +.|++++|..+|++..+. -+.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~-~~A~~~~~~~~~~~~~~a~~~~~lA~~~~--------~~g~~~~A~~~~~~al~~-~P~~ 82 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQD-AEVITVYNRYRVHMQLPARGYAAVAVAYR--------NLKQWQNSLTLWQKALSL-EPQN 82 (765)
T ss_pred CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHh-CCCC
Confidence 4455666677777888999 89999999998744445666777777666 899999999999998775 2345
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV- 269 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~- 269 (502)
...+..+...+.+.|++++|...+++..+.. |+...+.. +...+...|+.++|+..+++.... .|+.
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~~~~--------la~~l~~~g~~~~Al~~l~~al~~--~P~~~ 150 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKANLLA--------LAYVYKRAGRHWDELRAMTQALPR--APQTQ 150 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 6778889999999999999999999998763 44322333 555556689999999999999875 4443
Q ss_pred hHHHHHHHHHHhccccHHH----------------------------------------------HHHHHHHHHHc-CCC
Q 010739 270 YSYLIALTAVVKELNEFGK----------------------------------------------ALRKLKGYVRA-GSI 302 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~----------------------------------------------a~~~~~~m~~~-g~~ 302 (502)
..+..+..++.+. +..++ |+..++.+.+. .-.
T Consensus 151 ~~~~~la~~l~~~-~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 151 QYPTEYVQALRNN-RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHHHHHC-CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 3334444444443 34443 44444444322 223
Q ss_pred Cchhc-hHHHH---HHHHhc-CcHHhHHHHHHHHHHcCCC-CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--
Q 010739 303 AELDG-KNLGL---IEKYQS-DLLADGSRLSSWAIQEGGS-SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-- 374 (502)
Q Consensus 303 p~~~~-~~~~l---i~~~~~-g~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-- 374 (502)
|+... +..+. +..+.. |+.++|...|+++...+.+ +.+...+ +...|...|++++|+.+|++..+..-..
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 33211 11111 122334 8889999999888777643 2232233 4667888899999999988876542111
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 375 -DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN-----------SLCKK---KTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 375 -~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~-----------~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
.......+..++...|++++|.++++.+.... ..|+. ..+..+...+...|+.++|.++++++..
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12345556667788899999988888776543 12231 2344567778888999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhhhh
Q 010739 440 LGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 440 ~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~~~ 500 (502)
.. +-+...+..+...+.. .|+.++|++.++....... +.-.+...+.+.|+++.+.
T Consensus 388 ~~-P~n~~l~~~lA~l~~~----~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 388 NA-PGNQGLRIDYASVLQA----RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred hC-CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 52 2234445555555545 6888999888887755331 2225555677777766654
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.41 E-value=1.7e-09 Score=121.37 Aligned_cols=347 Identities=10% Similarity=0.010 Sum_probs=238.0
Q ss_pred HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739 86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK 164 (502)
Q Consensus 86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~ 164 (502)
+++|++.|++.. ..|. .+..+..+-..+.+.|++ ++|.+.|+...+....+...+..+...+
T Consensus 367 ~~eA~~~~~~Al~~~P~----------~~~a~~~Lg~~~~~~g~~-~eA~~~y~~aL~~~p~~~~a~~~L~~l~------ 429 (1157)
T PRK11447 367 LAQAERLYQQARQVDNT----------DSYAVLGLGDVAMARKDY-AAAERYYQQALRMDPGNTNAVRGLANLY------ 429 (1157)
T ss_pred HHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHH------
Confidence 566666666654 2222 123366777889999999 8999999999987744555666555533
Q ss_pred hhhhhccHhhHHHHHHHHhhCCCC--------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCC
Q 010739 165 YIEEERGVGDVVDLLVDMDCVGLK--------PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGG 235 (502)
Q Consensus 165 ~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~ 235 (502)
..++.++|..+++.+....-. .....+..+...+...|++++|.+.|++..+.. |+.. .+..
T Consensus 430 ---~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~---- 500 (1157)
T PRK11447 430 ---RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYR---- 500 (1157)
T ss_pred ---HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH----
Confidence 345789999888765432100 012346667788899999999999999998765 4421 1111
Q ss_pred CchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchH-----
Q 010739 236 PTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKN----- 309 (502)
Q Consensus 236 ~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----- 309 (502)
+...+...|++++|...|++.... .|+ ...+..+...+.+. ++.++|...++.+......++.....
T Consensus 501 ----LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~-~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 501 ----LAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGS-DRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred ----HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhC-CCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 455566689999999999998764 343 33333333344555 78999999888763322222211100
Q ss_pred ---HHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010739 310 ---LGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI 385 (502)
Q Consensus 310 ---~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 385 (502)
..+...+.. |+.++|.++++. .| .+...+..+-..+.+.|+.++|+..|++..+.. .-+...+..+...
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~ 646 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ-----QP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEV 646 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh-----CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 124455777 999999998861 22 233467778888999999999999999998752 2256778888899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHccc
Q 010739 386 CASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY--P---EYMDRVAVLQGLRKRI 460 (502)
Q Consensus 386 ~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p---~~~t~~~ll~~~~~~~ 460 (502)
+...|+.++|.+.++...... ..+...+..+...+...|+.++|.+++++.+...-. | +...+..+-..+..
T Consensus 647 ~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~-- 723 (1157)
T PRK11447 647 DIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ-- 723 (1157)
T ss_pred HHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH--
Confidence 999999999999999766542 224556666888899999999999999998875422 2 22344444444444
Q ss_pred cccccHHHHHHHHhhhh
Q 010739 461 QQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 461 ~~~~~~~~a~~~~~~m~ 477 (502)
.|+.++|+..++...
T Consensus 724 --~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 724 --TGQPQQALETYKDAM 738 (1157)
T ss_pred --cCCHHHHHHHHHHHH
Confidence 799999999988774
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.39 E-value=1.4e-08 Score=107.64 Aligned_cols=352 Identities=11% Similarity=0.007 Sum_probs=175.8
Q ss_pred HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739 86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK 164 (502)
Q Consensus 86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~ 164 (502)
+..|++.|++.. ..|.. +.....++..+...|+. +.|+..++...............+...+.
T Consensus 50 ~~~Al~~L~qaL~~~P~~----------~~av~dll~l~~~~G~~-~~A~~~~eka~~p~n~~~~~llalA~ly~----- 113 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQ----------SGQVDDWLQIAGWAGRD-QEVIDVYERYQSSMNISSRGLASAARAYR----- 113 (822)
T ss_pred HHHHHHHHHHHHhhCccc----------hhhHHHHHHHHHHcCCc-HHHHHHHHHhccCCCCCHHHHHHHHHHHH-----
Confidence 778888887766 33431 00112445555555666 56666666665111112222222222222
Q ss_pred hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739 165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~ 244 (502)
..|++++|+.+|+++.+..- -|...+..++..|.+.++.++|.+.++++.... |+...|-. +++-.
T Consensus 114 ---~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~--------layL~ 179 (822)
T PRK14574 114 ---NEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMT--------LSYLN 179 (822)
T ss_pred ---HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHH--------HHHHH
Confidence 45666666666666655422 234455555666666666666666666665443 33222211 11111
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHH---------------------------------
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKAL--------------------------------- 290 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~--------------------------------- 290 (502)
...++..+|++.++++.+. .|+ ...+..+..++.+. |-...|.
T Consensus 180 ~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~-~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 180 RATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRN-RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 1124444466666666554 232 33334444444444 2222332
Q ss_pred ---------------HHHHHH-HHcCCCCch-hchHHHHHH---HHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHH
Q 010739 291 ---------------RKLKGY-VRAGSIAEL-DGKNLGLIE---KYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLA 349 (502)
Q Consensus 291 ---------------~~~~~m-~~~g~~p~~-~~~~~~li~---~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 349 (502)
.-++.+ ...+-.|.. ..|..+.++ ++.+ |++.++.+.|+.+...+.+-++ .+--.+.+
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~-y~~~a~ad 335 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD-YARRWAAS 335 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH-HHHHHHHH
Confidence 223333 112222221 112112222 2334 6777777777776666644333 45566677
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------CCCH--
Q 010739 350 MYICAGRGLEAERQLWEMKLVG-----KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS-----------LCKK-- 411 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-----------~p~~-- 411 (502)
+|...+++++|+.++.+..... ..++......|.-++..++++++|..+++.+..... .||.
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 7777777777777777765432 122333345666677777777777777766655210 1221
Q ss_pred HH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 412 KT-LSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 412 ~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
.. +..++..+...|+..+|++.++++.... +-|......+-+.+.. -|...+|+..++..
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~----Rg~p~~A~~~~k~a 476 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLA----RDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Confidence 11 1225555666777777777777765432 2344444444444444 46666666666544
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=4.6e-11 Score=120.02 Aligned_cols=68 Identities=9% Similarity=0.117 Sum_probs=41.7
Q ss_pred HHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 010739 135 EVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAV 211 (502)
Q Consensus 135 ~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 211 (502)
.++-.+...| .|+.+||..+|..|| ..|+++.|- +|.-|.-..++.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc--------~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC--------TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc--------ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC
Confidence 4555666666 677777777777777 677777776 6666665555555555555555555555544443
No 25
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=3.6e-10 Score=113.78 Aligned_cols=271 Identities=13% Similarity=0.083 Sum_probs=181.3
Q ss_pred ChHHHHHHHh-cccChhh--HHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhh
Q 010739 99 EPSDILEEMN-DRLSARE--LQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGD 174 (502)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~--~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 174 (502)
.|.+++..+. .|+.|+. |..+|..||..|+. +.|- +|..|+-.. .++...|+.++.+.. +.++.+.
T Consensus 8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdi-eaat-if~fm~~ksLpv~e~vf~~lv~sh~--------~And~En 77 (1088)
T KOG4318|consen 8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDI-EAAT-IFPFMEIKSLPVREGVFRGLVASHK--------EANDAEN 77 (1088)
T ss_pred CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCC-cccc-chhhhhcccccccchhHHHHHhccc--------ccccccC
Confidence 4556666654 6777666 99999999999999 6777 999998877 668899999998666 7777776
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHH
Q 010739 175 VVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAI 254 (502)
Q Consensus 175 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~ 254 (502)
+. .|...||+.|..+|.+.||+..-..+=+.|.. +..++...|-.....
T Consensus 78 pk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~--------------------i~~sfs~~Gvgs~e~ 126 (1088)
T KOG4318|consen 78 PK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLES--------------------INQSFSDHGVGSPER 126 (1088)
T ss_pred CC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHH--------------------HHhhhhhhccCcHHH
Confidence 65 58889999999999999998762222222322 355555555555555
Q ss_pred HHHHHHHH-cCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc--CcHHhHHHHHHH
Q 010739 255 KLVIHLRE-SGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS--DLLADGSRLSSW 330 (502)
Q Consensus 255 ~~~~~m~~-~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~--g~~~~a~~~~~~ 330 (502)
.++..+.- .+.-||..+ ++.-..-. |-++.+++++..+ ...-..|-.+ .++-+.. ..+++-....
T Consensus 127 ~fl~k~~c~p~~lpda~n---~illlv~e-glwaqllkll~~~Pvsa~~~p~~v-----fLrqnv~~ntpvekLl~~c-- 195 (1088)
T KOG4318|consen 127 WFLMKIHCCPHSLPDAEN---AILLLVLE-GLWAQLLKLLAKVPVSAWNAPFQV-----FLRQNVVDNTPVEKLLNMC-- 195 (1088)
T ss_pred HHHhhcccCcccchhHHH---HHHHHHHH-HHHHHHHHHHhhCCcccccchHHH-----HHHHhccCCchHHHHHHHH--
Confidence 55544332 245566554 33333334 3466666655554 2211111111 1222222 2222222222
Q ss_pred HHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 010739 331 AIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK 410 (502)
Q Consensus 331 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~ 410 (502)
......++..+|.+.+.+-..+|+++.|..++.+|++.|+..+.+-|..+|-+ .++...+..++..|.++|+.|+
T Consensus 196 --ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~ 270 (1088)
T KOG4318|consen 196 --KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG 270 (1088)
T ss_pred --HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC
Confidence 12211334568888888888899999999999999999998888888888866 6788888888899999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 010739 411 KKTLSWLLRGYIKGGH 426 (502)
Q Consensus 411 ~~~~~~li~~~~~~g~ 426 (502)
..|+...+..+..+|.
T Consensus 271 seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 271 SETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhHHHHHhhhcchh
Confidence 9998886666666555
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.29 E-value=9.7e-09 Score=99.95 Aligned_cols=347 Identities=13% Similarity=0.038 Sum_probs=226.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
+.|..+-..+...|+. ..|+++++.+.+...-..+.|..+-.++. ..|+.+.|...|.+..+ +.|+...
T Consensus 117 e~ysn~aN~~kerg~~-~~al~~y~~aiel~p~fida~inla~al~--------~~~~~~~a~~~~~~alq--lnP~l~c 185 (966)
T KOG4626|consen 117 EAYSNLANILKERGQL-QDALALYRAAIELKPKFIDAYINLAAALV--------TQGDLELAVQCFFEALQ--LNPDLYC 185 (966)
T ss_pred HHHHHHHHHHHHhchH-HHHHHHHHHHHhcCchhhHHHhhHHHHHH--------hcCCCcccHHHHHHHHh--cCcchhh
Confidence 3488888889999999 89999999998887446677877777777 88999999999888776 5566554
Q ss_pred HHHHH-HHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhH
Q 010739 194 IEKVI-SLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYS 271 (502)
Q Consensus 194 y~~li-~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t 271 (502)
..+-+ ..+...|++++|..-+.+..+.. |. |.+ .++-+-..+..+|+..+|+..|++-.. +.|+ ...
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~---fAi----awsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dA 254 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQ--PC---FAI----AWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDA 254 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhC--Cc---eee----eehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHH
Confidence 44333 33344788888888877665543 21 111 111133444457899999988887664 4555 356
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhc-hHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHH
Q 010739 272 YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDG-KNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLA 349 (502)
Q Consensus 272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 349 (502)
|-.|-+.|... +.+++|+..+..- ....|+... +. -|-..|-. |.++-|...+++..+....-++ .||.|-.
T Consensus 255 YiNLGnV~ke~-~~~d~Avs~Y~rA--l~lrpn~A~a~g-Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~--Ay~Nlan 328 (966)
T KOG4626|consen 255 YINLGNVYKEA-RIFDRAVSCYLRA--LNLRPNHAVAHG-NLACIYYEQGLLDLAIDTYKRALELQPNFPD--AYNNLAN 328 (966)
T ss_pred HhhHHHHHHHH-hcchHHHHHHHHH--HhcCCcchhhcc-ceEEEEeccccHHHHHHHHHHHHhcCCCchH--HHhHHHH
Confidence 77777777777 6778887655443 334454332 22 23333555 8888888888887777755555 8888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Q 010739 350 MYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHI 427 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 427 (502)
++-..|++.+|++.+..... ..|+ ....+.|-..+...|.+++|..++....+.. |. ....|-|-..|-+.|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccH
Confidence 88888888888888887664 3343 3456677778888888888888887655443 33 34556677777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhh
Q 010739 428 NDAAETLTKMLDLGLYPEYM-DRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWI 498 (502)
Q Consensus 428 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~ 498 (502)
++|+..+++.++ +.|+.. .|+.+=..|.. -|++++|+..+.....-.. -.+.|-..|-..|++.+
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke----~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKE----MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHH----hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHH
Confidence 888888877653 455432 23333333333 5677777766655533221 11234444555555443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.27 E-value=9.8e-08 Score=101.24 Aligned_cols=353 Identities=11% Similarity=0.071 Sum_probs=234.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVD-NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
|...|. ..+.|++ ..|++.|++..+....+ +..+ .++..+. ..|+.++|+..+++.... -.......
T Consensus 38 y~~aii-~~r~Gd~-~~Al~~L~qaL~~~P~~~~av~-dll~l~~--------~~G~~~~A~~~~eka~~p-~n~~~~~l 105 (822)
T PRK14574 38 YDSLII-RARAGDT-APVLDYLQEESKAGPLQSGQVD-DWLQIAG--------WAGRDQEVIDVYERYQSS-MNISSRGL 105 (822)
T ss_pred HHHHHH-HHhCCCH-HHHHHHHHHHHhhCccchhhHH-HHHHHHH--------HcCCcHHHHHHHHHhccC-CCCCHHHH
Confidence 444444 3577999 79999999998887233 2344 6666566 789999999999988721 12233334
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL 273 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 273 (502)
-++...|...|++++|.++|+++.+.. |+. ..+.. +...+...++.++|++.++..... .|+...|.
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~g--------La~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l 173 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISG--------MIMTQADAGRGGVVLKQATELAER--DPTVQNYM 173 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHH--------HHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH
Confidence 444668888999999999999998776 332 11111 344455579999999999998765 66766664
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHH------------------------
Q 010739 274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLS------------------------ 328 (502)
Q Consensus 274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~------------------------ 328 (502)
.++..+... ++..+|++.++++.+.. |+...+...++....+ |-...|+++.
T Consensus 174 ~layL~~~~-~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 174 TLSYLNRAT-DRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 443333333 45656999999885552 3332221123333333 3333333222
Q ss_pred ------------------------HHHHHc-C-CCCch---HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010739 329 ------------------------SWAIQE-G-GSSLY---GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLY 379 (502)
Q Consensus 329 ------------------------~~m~~~-~-~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 379 (502)
+.+... + .|+.. ....-=.+-++.+.|++.++.+.|+.|...|.+....+-
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 222221 1 12211 011123455677899999999999999999988777788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-------------
Q 010739 380 DIVLAICASQNEGSAVSRLLSRIEVMN-----SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG------------- 441 (502)
Q Consensus 380 ~~li~~~~~~~~~~~a~~l~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------- 441 (502)
..+.++|...+..++|..+++.+.... ..++......|.-+|...+++++|..+++++.+.-
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 999999999999999999998875433 12234345679999999999999999999998731
Q ss_pred CCCCHHHHHHHHHH-HHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhhh
Q 010739 442 LYPEYMDRVAVLQG-LRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 442 ~~p~~~t~~~ll~~-~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~~ 499 (502)
-.||...+..+.-. +.. .|++.+|++.++++..... +...+-+.+...|.-..+
T Consensus 411 pn~d~~~~~~l~a~~~~~----~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVA----LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred CCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 23566655444444 344 7999999999999965542 444555666666665444
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.27 E-value=2.7e-11 Score=114.27 Aligned_cols=251 Identities=16% Similarity=0.093 Sum_probs=58.6
Q ss_pred hhccHhhHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKP-GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV 246 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~ 246 (502)
+.|++++|.+++++-....-+| |...|..+-..+...++++.|.+.++++...+-. +...|.. ++.- ..
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~--------l~~l-~~ 89 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYER--------LIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc--------cccc-cc
Confidence 5566666666664333222122 2333333334444556666666666666544422 1222222 1111 34
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH-cCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR-AGSIAELDGKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~~li~~~~~-g~~~~a 324 (502)
.+++++|.+++...-+. .++...+...+..+.+. ++++++.++++.... .....+...+. .+...+.+ |+.++|
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWL-ALAEIYEQLGDPDKA 165 (280)
T ss_dssp ------------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHH-HHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHcCCHHHH
Confidence 55666666555544332 23444445555555555 455555555555432 11222333222 23333444 555555
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
.+.+++.........+ ..+.++..+...|+.+++..+++...... ..|...+..+-.++...|+.++|...++....
T Consensus 166 ~~~~~~al~~~P~~~~--~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALELDPDDPD--ARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHH-TT-HH--HHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 5555554444333222 44445555555555555555554444332 22223334444455555555555555544443
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
.. ..|......+..++...|+.++|.++.++
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT--------------
T ss_pred cc-ccccccccccccccccccccccccccccc
Confidence 22 12344444455555555555555554443
No 29
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.27 E-value=4.5e-09 Score=102.18 Aligned_cols=311 Identities=14% Similarity=0.084 Sum_probs=237.4
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE 226 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 226 (502)
-..+|+.+-+.+- ..|++++|+.+++.|.+..- -.+..|..+-.++...|+.+.|.+.|.+..+.+ |+.
T Consensus 115 ~ae~ysn~aN~~k--------erg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l 183 (966)
T KOG4626|consen 115 GAEAYSNLANILK--------ERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDL 183 (966)
T ss_pred HHHHHHHHHHHHH--------HhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cch
Confidence 5568888888666 89999999999999988532 257899999999999999999999998887655 665
Q ss_pred ccccccCCCCchHHHHHHHH-hCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc
Q 010739 227 GDGEGQQGGPTGYLAWKMMV-EGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE 304 (502)
Q Consensus 227 ~ty~~~~~~~~~~~~~~~~~-~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 304 (502)
....+ ..-++++ .|+.++|...|.+-.+. .|. .+.|+.|-..+-.. |+...|++.|++-++ ++|+
T Consensus 184 ~ca~s--------~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~-Gei~~aiq~y~eAvk--ldP~ 250 (966)
T KOG4626|consen 184 YCARS--------DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQ-GEIWLAIQHYEEAVK--LDPN 250 (966)
T ss_pred hhhhc--------chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhc-chHHHHHHHHHHhhc--CCCc
Confidence 55544 4455555 49999999988876654 554 35677777777777 789999888877643 3454
Q ss_pred hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010739 305 LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIV 382 (502)
Q Consensus 305 ~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 382 (502)
-...-.-|-..|.. +.+++|...+.+..... +...+.|..|-..|...|.++-|.+.+++..+ +.|+ ...|+.|
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNL 326 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHH
Confidence 33221247777888 99999999887665543 44557888888889999999999999999885 4565 4679999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcccc
Q 010739 383 LAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM-DRVAVLQGLRKRIQ 461 (502)
Q Consensus 383 i~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~ 461 (502)
-.++...|++.+|.+.+........ -.....+-|-..|...|.+++|..+|....+ +.|+.. .++.|-.-|..
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kq--- 400 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQ--- 400 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHh---
Confidence 9999999999999999987766552 2466778899999999999999999998765 455543 34555555544
Q ss_pred ccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcc
Q 010739 462 QSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYK 495 (502)
Q Consensus 462 ~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~ 495 (502)
.|++++|+..+++..+ +.|..-++|+..|+
T Consensus 401 -qgnl~~Ai~~Ykealr---I~P~fAda~~NmGn 430 (966)
T KOG4626|consen 401 -QGNLDDAIMCYKEALR---IKPTFADALSNMGN 430 (966)
T ss_pred -cccHHHHHHHHHHHHh---cCchHHHHHHhcch
Confidence 7999999999887755 45666666666664
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.27 E-value=5.1e-08 Score=96.51 Aligned_cols=279 Identities=10% Similarity=0.010 Sum_probs=185.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCChHHHHHH-HHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH--HHHHHHH
Q 010739 126 EGRDSWCALEVFEWLKKENRVDNETMELM-VSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE--KVISLYW 202 (502)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~l-i~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~--~li~~~~ 202 (502)
.|++ +.|.+.+....+.. .++..+-.+ ...+. +.|+.+.|...|+++.+ ..|+...+- .....+.
T Consensus 97 eGd~-~~A~k~l~~~~~~~-~~p~l~~llaA~aA~--------~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 97 EGDY-QQVEKLMTRNADHA-EQPVVNYLLAAEAAQ--------QRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL 164 (398)
T ss_pred CCCH-HHHHHHHHHHHhcc-cchHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH
Confidence 4888 78887777654443 223333222 33224 89999999999999976 445554333 3467889
Q ss_pred hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-------hHHHHH
Q 010739 203 EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-------YSYLIA 275 (502)
Q Consensus 203 ~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~ty~~l 275 (502)
..|+++.|...++++.+.+ |+...... .+...++..|++++|.+++..+.+.+..++. .+|..+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~--P~~~~al~-------ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVA--PRHPEVLR-------LAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC--CCCHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998776 44321111 2566667789999999999999988665433 133334
Q ss_pred HHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739 276 LTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC 353 (502)
Q Consensus 276 i~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 353 (502)
+....+. .+.+...++++.+ .+.. .+.... ..+...+.. |+.++|.+++++.... .+ | .--.++.+.+.
T Consensus 236 ~~~~~~~-~~~~~l~~~w~~lp~~~~--~~~~~~-~~~A~~l~~~g~~~~A~~~L~~~l~~-~~--~--~~l~~l~~~l~ 306 (398)
T PRK10747 236 MDQAMAD-QGSEGLKRWWKNQSRKTR--HQVALQ-VAMAEHLIECDDHDTAQQIILDGLKR-QY--D--ERLVLLIPRLK 306 (398)
T ss_pred HHHHHHh-cCHHHHHHHHHhCCHHHh--CCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhc-CC--C--HHHHHHHhhcc
Confidence 4443344 4456666666666 3322 222222 256777777 8888888888776662 22 2 12223444555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010739 354 AGRGLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAE 432 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 432 (502)
.++.+++....+...+. .|+.. .+.++-..|.+.+++++|.+.|+..... .|+..+|..+-..+.+.|+.++|.+
T Consensus 307 ~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 307 TNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred CCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 68888888888887743 45444 4455557888888888888888877754 4888888888888888888888888
Q ss_pred HHHHHH
Q 010739 433 TLTKML 438 (502)
Q Consensus 433 l~~~m~ 438 (502)
++++-.
T Consensus 383 ~~~~~l 388 (398)
T PRK10747 383 MRRDGL 388 (398)
T ss_pred HHHHHH
Confidence 888653
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.20 E-value=7e-08 Score=95.56 Aligned_cols=283 Identities=12% Similarity=-0.010 Sum_probs=201.8
Q ss_pred hccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhC
Q 010739 169 ERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEG 248 (502)
Q Consensus 169 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g 248 (502)
.|+++.|.+.+....+.+-.| ...|-.......+.|+++.|.+.+.++.+.. |+...+.. .....-....|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~------l~~a~l~l~~g 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVE------ITRVRIQLARN 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHH------HHHHHHHHHCC
Confidence 599999998888765542222 2234344455589999999999999997643 44322211 00123445579
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh-------chHHHHHHHHhc-Cc
Q 010739 249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD-------GKNLGLIEKYQS-DL 320 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~~li~~~~~-g~ 320 (502)
++++|.+.+++..+.. +-+...+..+...|.+. |+++++.+++..+.+.+..++.. .|. .++..... .+
T Consensus 168 ~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~-~l~~~~~~~~~ 244 (398)
T PRK10747 168 ENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI-GLMDQAMADQG 244 (398)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHhcC
Confidence 9999999999998763 23467788889999999 89999999999997776553321 111 22333333 44
Q ss_pred HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010739 321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLS 400 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~ 400 (502)
.+...++++..-..- +.+......+..++...|+.++|..++++..+. .||.. -.++.+....++.+++.+..+
T Consensus 245 ~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 245 SEGLKRWWKNQSRKT--RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHHHHHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHH
Confidence 455555554432221 234457888999999999999999999998873 44442 123344456689999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 401 RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 401 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
...+.. .-|...+..+-+.+.+.|++++|.+.|+...+. .|+..+|..+-..+.+ .|+.++|...+++-
T Consensus 319 ~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~----~g~~~~A~~~~~~~ 387 (398)
T PRK10747 319 QQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDR----LHKPEEAAAMRRDG 387 (398)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 887655 235667778999999999999999999998875 6999999988888887 79999999988754
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.19 E-value=4.3e-10 Score=106.12 Aligned_cols=258 Identities=14% Similarity=0.032 Sum_probs=102.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHH
Q 010739 118 LVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEK 196 (502)
Q Consensus 118 ~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~ 196 (502)
.+-..+.+.|++ +.|+++++...... .|+...|-.++..++. ..++.+.|...++++.+.+-. +...+..
T Consensus 13 ~~A~~~~~~~~~-~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-------~~~~~~~A~~ay~~l~~~~~~-~~~~~~~ 83 (280)
T PF13429_consen 13 RLARLLYQRGDY-EKALEVLKKAAQKIAPPDDPEYWRLLADLAW-------SLGDYDEAIEAYEKLLASDKA-NPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccc-------ccccccccccccccccccccc-ccccccc
Confidence 345667788999 89999996654444 3544333333332442 688999999999999887654 6667888
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc-CCCCCHhHHHHH
Q 010739 197 VISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES-GLKPEVYSYLIA 275 (502)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~l 275 (502)
++.. ...+++++|.+++++.-++. ++...+.. .+..+...|+++++.++++..... ...++...|..+
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~--------~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLS--------ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred cccc-cccccccccccccccccccc--cccchhhH--------HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 8888 79999999999988765554 33333333 566677789999999999998754 345677788888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739 276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA 354 (502)
Q Consensus 276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 354 (502)
-..+.+. |+.++|++.+++..+. .|+.......++..+.. |+.+++.++++.........+. .|..+-.+|...
T Consensus 153 a~~~~~~-G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~--~~~~la~~~~~l 227 (280)
T PF13429_consen 153 AEIYEQL-GDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD--LWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHC-CHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--HCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--HHHHHHHHhccc
Confidence 8888888 7999999999888554 35433222368888888 9999999988887776633333 788999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 355 GRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
|+.++|+..|++.... .| |......+.+++...|+.++|.++....
T Consensus 228 g~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 228 GRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 9999999999998763 45 6666677779999999999999887543
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.19 E-value=7.4e-08 Score=95.90 Aligned_cols=126 Identities=10% Similarity=0.042 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCC-H--HHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVL-AICASQNEGSAVSRLLSRIEVMNSLCK-K--KTLS 415 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li-~~~~~~~~~~~a~~l~~~m~~~~~~p~-~--~~~~ 415 (502)
..+-.+...+...|+.++|.+++++..+.. ||... +..+. -.....++.+.+.+.++...+.. |+ . ....
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~ 339 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINR 339 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCChhHHHHH
Confidence 344455555555555555555555555432 22221 11111 11122344444444444433221 22 2 2333
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhh
Q 010739 416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKR 475 (502)
Q Consensus 416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~ 475 (502)
++-..+.+.|++++|.+.|+........||..++..+-..+.+ .|+.++|.+++++
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~----~g~~~~A~~~~~~ 395 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ----AGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence 4445555555555555555533333334555555555444444 4555555555444
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.15 E-value=6.1e-07 Score=91.46 Aligned_cols=363 Identities=15% Similarity=0.046 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhh
Q 010739 83 SEEFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSW 161 (502)
Q Consensus 83 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 161 (502)
.+.+++|.+++.+.. ..|. .+-.|.+|-..|-+.|+. ++++..+-......+-|...|..+-....
T Consensus 152 rg~~eeA~~i~~EvIkqdp~----------~~~ay~tL~~IyEqrGd~-eK~l~~~llAAHL~p~d~e~W~~ladls~-- 218 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPR----------NPIAYYTLGEIYEQRGDI-EKALNFWLLAAHLNPKDYELWKRLADLSE-- 218 (895)
T ss_pred hCCHHHHHHHHHHHHHhCcc----------chhhHHHHHHHHHHcccH-HHHHHHHHHHHhcCCCChHHHHHHHHHHH--
Confidence 344777777777665 2232 223399999999999999 78888766665555447788988877444
Q ss_pred hhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHH
Q 010739 162 VKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLA 241 (502)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~ 241 (502)
+.|+++.|.-.|.+..+. -+++...+--=+..|-+.|+...|..-|.+|.+..-..|..-+.. .+
T Consensus 219 ------~~~~i~qA~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d--------~i 283 (895)
T KOG2076|consen 219 ------QLGNINQARYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED--------LI 283 (895)
T ss_pred ------hcccHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH--------HH
Confidence 899999999999998886 345666666677889999999999999999987653212111111 44
Q ss_pred HHHHH----hCcHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCC---------------
Q 010739 242 WKMMV----EGKYVDAIKLVIHLRES-GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGS--------------- 301 (502)
Q Consensus 242 ~~~~~----~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~--------------- 301 (502)
+..+. .++.+.|.+.++.-... +-..+..++++++..+.+. ..++.+...+..+.....
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~-~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN-KQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-HHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 44433 46668888888877663 3445667788899999998 889999888887754111
Q ss_pred -------CCchhchHHHH---HHHHhc-CcHHhHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 302 -------IAELDGKNLGL---IEKYQS-DLLADGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 302 -------~p~~~~~~~~l---i~~~~~-g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
.|+...|..-+ .-+... ...+....+........ .+..++-.|.-+-.+|...|++.+|+.+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 12222222112 222223 34444444444445555 3444566888899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------C
Q 010739 370 VGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC-KKKTLSWLLRGYIKGGHINDAAETLTKMLD--------L 440 (502)
Q Consensus 370 ~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~ 440 (502)
.-.--+...|--+-.++-..|..+.|.+.++...... | +...--.|-..+-+.|+.|+|.+.++.|.. .
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 7555567788888899999999999999998887654 3 344444577788899999999999999753 2
Q ss_pred CCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739 441 GLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 441 g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~ 480 (502)
+..|+.....-...- +.+.|+.++.+.....|.+..
T Consensus 521 a~~~e~ri~~~r~d~----l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 521 AWEPERRILAHRCDI----LFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred cccHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHH
Confidence 344555444333333 334788888888777776654
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.13 E-value=4e-07 Score=90.67 Aligned_cols=256 Identities=9% Similarity=-0.015 Sum_probs=146.8
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMV 246 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~ 246 (502)
..|+.+.|...|++..+.--.++....-.....+...|+++.|...++.+.+.. |+.. ... .+...++.
T Consensus 130 ~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~--------ll~~~~~~ 199 (409)
T TIGR00540 130 QRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLK--------LAEEAYIR 199 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH--------HHHHHHHH
Confidence 456677777777665543211112223334556666777777777777766654 3321 111 13444444
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH---HhccccHHHHHHHHHHHHHcCC---CCchhchHHHHHHHHhc-C
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAV---VKELNEFGKALRKLKGYVRAGS---IAELDGKNLGLIEKYQS-D 319 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~---~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~~li~~~~~-g 319 (502)
.|++++|.+.+..+.+.++.++......-..++ ... +..++..+.+..+.+..- ..+...+. .+...+.. |
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~-~~~~~~~~~L~~~~~~~p~~~~~~~~l~~-~~a~~l~~~g 277 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE-AMADEGIDGLLNWWKNQPRHRRHNIALKI-ALAEHLIDCD 277 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHCCHHHhCCHHHHH-HHHHHHHHCC
Confidence 677777777777777665433222212222222 211 122222333444422211 01333332 56667777 8
Q ss_pred cHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H-HHHHHHHHHhcCChhHHH
Q 010739 320 LLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD--L-YDIVLAICASQNEGSAVS 396 (502)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t-~~~li~~~~~~~~~~~a~ 396 (502)
+.++|.+++++..+......+..............++.+.+.+.++...+. .|+.. . ..++-..|.+.|++++|.
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHH
Confidence 888888888887776544433111222222233357778888888776643 45444 3 345557888888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 397 RLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 397 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 356 ~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 356 DAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88886656666788888888888888999999998888874
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=8.2e-07 Score=80.40 Aligned_cols=310 Identities=15% Similarity=0.053 Sum_probs=212.2
Q ss_pred hccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhC
Q 010739 169 ERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEG 248 (502)
Q Consensus 169 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g 248 (502)
.++.++|.++|-+|.+.. +-+..+.-+|-+.|-+.|..|.|.++-+.+.++- | .|++. +....--+...++.+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---d-lT~~q-r~lAl~qL~~Dym~aG 121 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---D-LTFEQ-RLLALQQLGRDYMAAG 121 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---C-CchHH-HHHHHHHHHHHHHHhh
Confidence 589999999999999842 2345566678899999999999999999887542 2 22221 0001111566777889
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh---chHHHHHHHHhc-CcHHhH
Q 010739 249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD---GKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~~li~~~~~-g~~~~a 324 (502)
-++.|.++|..+.+.|. .-....-.|+..|-.. .++++|++.-+++.+.+-.+..+ .|-.-+-..+.- .+++.|
T Consensus 122 l~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999987532 1234556789999999 89999999999897776655433 111123333334 788899
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
...+.+..+......- .--.+-..+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+
T Consensus 200 ~~~l~kAlqa~~~cvR--Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVR--ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCcccee--hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9998887766533311 23334455777999999999999999887655566778888999999999999988877766
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchh
Q 010739 405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGP 484 (502)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 484 (502)
....+ ..-..+-+.-....-.+.|...+.+-+.. +|+..-+..+++.-..+.+. |...+-+-.++.|.... +.+
T Consensus 278 ~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daee-g~~k~sL~~lr~mvge~-l~~ 351 (389)
T COG2956 278 TNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEE-GRAKESLDLLRDMVGEQ-LRR 351 (389)
T ss_pred ccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccc-cchhhhHHHHHHHHHHH-Hhh
Confidence 54333 33334444334444556666666554443 59999999999998754333 33555555667775554 444
Q ss_pred HHHHHHHhhc
Q 010739 485 CLVYLYIKKY 494 (502)
Q Consensus 485 ~li~~y~~~g 494 (502)
..-+-+-+||
T Consensus 352 ~~~YRC~~CG 361 (389)
T COG2956 352 KPRYRCQNCG 361 (389)
T ss_pred cCCceecccC
Confidence 4445555555
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=7.8e-07 Score=83.77 Aligned_cols=296 Identities=14% Similarity=0.123 Sum_probs=176.1
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH---
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM--- 244 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~--- 244 (502)
+.|+++.|+..|+...+ ..||..+--.|+-++.--|+.++..+.|..|..--..||..-|-.+...|.+.++...
T Consensus 288 q~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred ecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 68999999999998665 3578766555566666789999999999999988777887777543333222222222
Q ss_pred ----------------------------------------------------------------HHhCcHHHHHHHHHHH
Q 010739 245 ----------------------------------------------------------------MVEGKYVDAIKLVIHL 260 (502)
Q Consensus 245 ----------------------------------------------------------------~~~g~~~~a~~~~~~m 260 (502)
+++|+++.|+++++-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 2246666676666666
Q ss_pred HHcCCCCCHhHH-HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHH-HHHH----HHhcCcHHhHHHHHHHHHHc
Q 010739 261 RESGLKPEVYSY-LIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNL-GLIE----KYQSDLLADGSRLSSWAIQE 334 (502)
Q Consensus 261 ~~~g~~p~~~ty-~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-~li~----~~~~g~~~~a~~~~~~m~~~ 334 (502)
.+..-+.-...- |...--|.+.|.++..|.+.-+.-+ +..-||. ++.+ +|..|+++.|.+.+++....
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 554221111111 1111112222233444433222111 1111111 1111 14446677777766665544
Q ss_pred CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH--------------------------------HCCCCC-CHHHHHH
Q 010739 335 GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK--------------------------------LVGKEA-DGDLYDI 381 (502)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------------------------------~~g~~p-~~~t~~~ 381 (502)
...-. ...||+=+ .+-..|++++|++.|-++. ...+.| |......
T Consensus 520 dasc~-ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCT-EALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred chHHH-HHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 32111 12333322 2344566666666554432 222333 5556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcccc
Q 010739 382 VLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQ 461 (502)
Q Consensus 382 li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 461 (502)
|-+.|-+.|+-.+|.+.+-+--. -+..|..|..||-.-|......++|...|++. .=+.|+...|..++..|.+.
T Consensus 598 l~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rr-- 672 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRR-- 672 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHh--
Confidence 66777777777777665532211 13458899999999999999999999999974 34789999999999999754
Q ss_pred ccccHHHHHHHHhhhhhc
Q 010739 462 QSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 462 ~~~~~~~a~~~~~~m~~~ 479 (502)
.|+...|..+++...+.
T Consensus 673 -sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 -SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred -cccHHHHHHHHHHHHHh
Confidence 89999999998877544
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.05 E-value=3.1e-06 Score=91.93 Aligned_cols=302 Identities=11% Similarity=-0.023 Sum_probs=205.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHH-cC--CCChHHHHHHHHHHhhhhh--------hhhhh----------hccHhh
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKK-EN--RVDNETMELMVSIMCSWVK--------KYIEE----------ERGVGD 174 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~-~~--~~~~~~~~~li~~~~~~~~--------~~~~~----------~~~~~~ 174 (502)
...+---..+.|+. ++|..+|+.... .+ .++....+-++..+.+... .+. + .|+..+
T Consensus 379 l~q~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 379 LDQLTWQLMQNGQS-REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS-KPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHcccH-HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc-cccccchhHHHHhhhhh
Confidence 33344455778888 899999988876 22 4555555566665552100 000 0 122222
Q ss_pred HHHHHHHHhhC-CC-CC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcH
Q 010739 175 VVDLLVDMDCV-GL-KP--GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKY 250 (502)
Q Consensus 175 a~~~~~~m~~~-g~-~p--~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~ 250 (502)
+....+...+. +. ++ +...|..+-.++.. |+.++|...+.+..... |+...... +.......|++
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~--------lA~al~~~Gr~ 525 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA--------VAYQAYQVEDY 525 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH--------HHHHHHHCCCH
Confidence 22112211111 12 33 56778888888877 88888999887776554 55321111 23333467999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHH
Q 010739 251 VDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSS 329 (502)
Q Consensus 251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~ 329 (502)
++|...|+++... .|+...+..+..++.+. |+.++|...+++..+.. |+.......+...... |++++|...++
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~-Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAA-GNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999987554 45555566667778888 79999999999886654 4333221123333444 99999999999
Q ss_pred HHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 010739 330 WAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNEGSAVSRLLSRIEVMNSL 408 (502)
Q Consensus 330 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~ 408 (502)
+...... . ...|..+-..+.+.|+.++|+..|++..+. .|+.. .++.+-..+...|+.++|.+.++...... .
T Consensus 601 ~AL~l~P-~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P 674 (987)
T PRK09782 601 RSLNIAP-S--ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-P 674 (987)
T ss_pred HHHHhCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 8876654 2 458889999999999999999999998864 56544 45555578999999999999998887654 2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 409 CKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 409 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
-+...+..+-.++...|++++|...|++..+..
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 367778889999999999999999999987654
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.02 E-value=4.2e-06 Score=90.92 Aligned_cols=289 Identities=12% Similarity=0.029 Sum_probs=195.5
Q ss_pred hhccHhhHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHhcCc---HHHHHHH------------HHHHHH-----------
Q 010739 168 EERGVGDVVDLLVDMDCV-G-LKPGFSMIEKVISLYWEMEK---KERAVLF------------VKAVLS----------- 219 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~-g-~~p~~~~y~~li~~~~~~g~---~~~A~~l------------~~~m~~----------- 219 (502)
+.|+.++|.++|+..... + ..++...-+-|+..|.+.+. ..+|..+ ..+..+
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 678899999999987662 2 33455666788888888877 3444333 111111
Q ss_pred cCCCCCCccccccCCCCchHH-HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 010739 220 RGIAYAEGDGEGQQGGPTGYL-AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR 298 (502)
Q Consensus 220 ~~~~p~~~ty~~~~~~~~~~~-~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~ 298 (502)
.+..|+. |+. .... .-.+...|+.++|+..|.+-... .|+......+...+... |++++|...++.+..
T Consensus 468 l~~~p~~--~~~-----~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~-Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 468 LGDMSPS--YDA-----AAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQV-EDYATALAAWQKISL 537 (987)
T ss_pred cccCCCC--CCH-----HHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHC-CCHHHHHHHHHHHhc
Confidence 0011110 111 0011 11222348888999988777654 47755444444445567 799999999988744
Q ss_pred cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 010739 299 AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD 377 (502)
Q Consensus 299 ~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 377 (502)
. .|+...+. .+...+.+ |+.++|.+.++......... ...+..+.....+.|++++|...+++..+ ..|+..
T Consensus 538 ~--~p~~~a~~-~la~all~~Gd~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~ 610 (987)
T PRK09782 538 H--DMSNEDLL-AAANTAQAAGNGAARDRWLQQAEQRGLGD--NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSAN 610 (987)
T ss_pred c--CCCcHHHH-HHHHHHHHCCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHH
Confidence 3 23333232 35556677 99999999999888765222 22343444444556999999999999885 457788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 010739 378 LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE-YMDRVAVLQGL 456 (502)
Q Consensus 378 t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~ 456 (502)
.|..+-..+.+.|+.++|...++...... ..+...++.+-..+...|+.++|.+.|++..+. .|+ ...+..+-.++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al 687 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 88888899999999999999999887765 235667777888999999999999999998875 353 44555566666
Q ss_pred HccccccccHHHHHHHHhhhhhcC
Q 010739 457 RKRIQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 457 ~~~~~~~~~~~~a~~~~~~m~~~~ 480 (502)
.. .|+.++|+..+++..+..
T Consensus 688 ~~----lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 688 QR----LDDMAATQHYARLVIDDI 707 (987)
T ss_pred HH----CCCHHHHHHHHHHHHhcC
Confidence 55 799999999998885543
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.01 E-value=1.8e-06 Score=80.52 Aligned_cols=288 Identities=11% Similarity=-0.026 Sum_probs=209.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 010739 126 EGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME 205 (502)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 205 (502)
.|++ .+|..+..+-.+.+......|-.-..++- +.|+.+.+-+++.+..+.--.++...+-+.-......|
T Consensus 97 eG~~-~qAEkl~~rnae~~e~p~l~~l~aA~AA~--------qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 97 EGDF-QQAEKLLRRNAEHGEQPVLAYLLAAEAAQ--------QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred cCcH-HHHHHHHHHhhhcCcchHHHHHHHHHHHH--------hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 5889 79999998877776223334444445444 88999999999999988755677888888899999999
Q ss_pred cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHH
Q 010739 206 KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-------YSYLIALTA 278 (502)
Q Consensus 206 ~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~ty~~li~~ 278 (502)
|.+.|..-++++.+.+-.+.. +.-+....+...|++.+...++..|.+.|+--|. .+|+.+++-
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~---------vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPE---------VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred CchhHHHHHHHHHHhCcCChH---------HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999877633221 1112455666689999999999999999876654 478888888
Q ss_pred HHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCC
Q 010739 279 VVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGR 356 (502)
Q Consensus 279 ~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 356 (502)
.... ++.+.-...+++. .+..-.|.... +++.-+.. |+.++|.++.++..+.+-.+. -...-.+.+-++
T Consensus 239 ~~~~-~~~~gL~~~W~~~pr~lr~~p~l~~---~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~l~~~d 309 (400)
T COG3071 239 ARDD-NGSEGLKTWWKNQPRKLRNDPELVV---AYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPRLRPGD 309 (400)
T ss_pred Hhcc-ccchHHHHHHHhccHHhhcChhHHH---HHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhhcCCCC
Confidence 8877 5677766677777 55566666664 57777777 999999998887777665442 112234445666
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739 357 GLEAERQLWEMK-LVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 357 ~~~A~~l~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 435 (502)
.+.-.+..+.-. .++..| ..+.++=..|.+.+.+.+|.+.|+.... ..|+..+|+.+-++|.+.|+.++|.++++
T Consensus 310 ~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred chHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 666666666543 345555 4455555778888889999999985544 46889999999999999999999998888
Q ss_pred HHHHCCCCC
Q 010739 436 KMLDLGLYP 444 (502)
Q Consensus 436 ~m~~~g~~p 444 (502)
+-...-..|
T Consensus 386 e~L~~~~~~ 394 (400)
T COG3071 386 EALLLTRQP 394 (400)
T ss_pred HHHHHhcCC
Confidence 765433333
No 41
>PF12854 PPR_1: PPR repeat
Probab=99.00 E-value=5e-10 Score=67.43 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 185 VGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 185 ~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.97 E-value=4.3e-07 Score=82.65 Aligned_cols=200 Identities=12% Similarity=-0.043 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
....+..+...|.+.|++++|.+.+++..+.. |+. ..+.. +...+...|++++|.+.+++..... +.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~--------la~~~~~~~~~~~A~~~~~~al~~~-~~~ 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLA--------LALYYQQLGELEKAEDSFRRALTLN-PNN 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhhC-CCC
Confidence 35667777778888888888888887776543 221 11111 3333344566666666666655442 123
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL 348 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 348 (502)
...+..+...+... |++++|.+.+++..+....+. ....+..+.
T Consensus 99 ~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~ 142 (234)
T TIGR02521 99 GDVLNNYGTFLCQQ-GKYEQAMQQFEQAIEDPLYPQ-----------------------------------PARSLENAG 142 (234)
T ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccc-----------------------------------chHHHHHHH
Confidence 34444455555555 566666666655543221111 112333344
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739 349 AMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (502)
..+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++..... ...+...+..+...+...|+.+
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHH
Confidence 44444555555555554444321 112233444444445555555555555444433 1223344444455555555555
Q ss_pred HHHHHHHHHH
Q 010739 429 DAAETLTKML 438 (502)
Q Consensus 429 ~A~~l~~~m~ 438 (502)
+|..+.+.+.
T Consensus 221 ~a~~~~~~~~ 230 (234)
T TIGR02521 221 AAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.2e-07 Score=82.23 Aligned_cols=239 Identities=16% Similarity=0.122 Sum_probs=170.5
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhccccHHHHHHHHHHHHHc-CCCCchhchH-HHHHHHHh
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEV-YSYLIALTAVVKELNEFGKALRKLKGYVRA-GSIAELDGKN-LGLIEKYQ 317 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~-~~li~~~~ 317 (502)
-.|++.+.+.++|.++|-+|.+. .|.+ .+--+|-+.|-+. |.+|+|+++-..+.+. ++.-+-.... -.|-.=|.
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsR-GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSR-GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhc-chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 56778899999999999999974 3332 2334455666666 8999999987777544 2222222210 01233388
Q ss_pred c-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCh
Q 010739 318 S-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD----LYDIVLAICASQNEG 392 (502)
Q Consensus 318 ~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~li~~~~~~~~~ 392 (502)
. |-+|.|+.+|..+.+.+..... ..-.|+.-|-+..+|++|.++-+++...+-.+..+ .|.-+-.......++
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~--AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEG--ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 8 9999999999998887744444 77889999999999999999999998776554322 233444455556788
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHH
Q 010739 393 SAVSRLLSRIEVMNSLCKKKTLSW-LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLN 471 (502)
Q Consensus 393 ~~a~~l~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~ 471 (502)
+.|..+++.....+ |+..--++ +-+.+...|+++.|.+.++...+.+..--..+...|..+|.. -|+.++.+.
T Consensus 197 d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----lg~~~~~~~ 270 (389)
T COG2956 197 DRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ----LGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----hCCHHHHHH
Confidence 88888887766554 33332333 667788899999999999999988766566677788888876 899999999
Q ss_pred HHhhhhhcCCchhHHHHHHH
Q 010739 472 LCKRLSDTSLIGPCLVYLYI 491 (502)
Q Consensus 472 ~~~~m~~~~~~~~~li~~y~ 491 (502)
.+..+.+.. ...+++.+..
T Consensus 271 fL~~~~~~~-~g~~~~l~l~ 289 (389)
T COG2956 271 FLRRAMETN-TGADAELMLA 289 (389)
T ss_pred HHHHHHHcc-CCccHHHHHH
Confidence 988887765 5555555443
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.94 E-value=7.2e-07 Score=81.15 Aligned_cols=198 Identities=13% Similarity=0.018 Sum_probs=142.1
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER 346 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 346 (502)
...+..+...+.+. +++++|.+.+++..+. .|+. ..+. .+...|.. |+.++|.+.+++........ ...+..
T Consensus 31 ~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~--~p~~~~~~~-~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQ-GDLEVAKENLDKALEH--DPDDYLAYL-ALALYYQQLGELEKAEDSFRRALTLNPNN--GDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CcccHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHH
Confidence 34555566666666 6777777777766443 2332 2222 35555666 88888888887776654333 347778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
+...+...|++++|...+++.......| ....+..+-..+...|++++|.+.++...... ..+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 8888899999999999999988753333 34456667788899999999999998877654 225667888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739 426 HINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 426 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
++++|.+.+++..+. ...+...+..+...+.. .|+.++|....+.+..
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARA----LGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHh
Confidence 999999999999876 33455566555555555 6899999988776644
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.88 E-value=1e-05 Score=75.58 Aligned_cols=286 Identities=9% Similarity=-0.033 Sum_probs=202.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcccChhh-HHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhh
Q 010739 86 FFEAIEELERMTREPSDILEEMNDRLSARE-LQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVK 163 (502)
Q Consensus 86 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~ 163 (502)
|.+|.+++.+-.. ++-.|-. |-.-..+--+.|+. +.+-..+.+..+.. .++...+-+..+.+.
T Consensus 100 ~~qAEkl~~rnae----------~~e~p~l~~l~aA~AA~qrgd~-~~an~yL~eaae~~~~~~l~v~ltrarlll---- 164 (400)
T COG3071 100 FQQAEKLLRRNAE----------HGEQPVLAYLLAAEAAQQRGDE-DRANRYLAEAAELAGDDTLAVELTRARLLL---- 164 (400)
T ss_pred HHHHHHHHHHhhh----------cCcchHHHHHHHHHHHHhcccH-HHHHHHHHHHhccCCCchHHHHHHHHHHHH----
Confidence 7777777766221 1112222 66666677778888 79999988887763 455556666666566
Q ss_pred hhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-------ccccccCCCC
Q 010739 164 KYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-------GDGEGQQGGP 236 (502)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~ty~~~~~~~ 236 (502)
..|+.+.|..-+++..+.+-. +........++|.+.|++.++..++..|.+.|+--|. .+|+.
T Consensus 165 ----~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g----- 234 (400)
T COG3071 165 ----NRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG----- 234 (400)
T ss_pred ----hCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH-----
Confidence 899999999999998887543 6778999999999999999999999999999854332 11111
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHH
Q 010739 237 TGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKY 316 (502)
Q Consensus 237 ~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~ 316 (502)
++.-....+..+.-...|+....+ .+-+...-.+++.-+.+. |+.++|.+++.+-.+.+.+|+... ++ .+
T Consensus 235 ---lL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l-~~~~~A~~~i~~~Lk~~~D~~L~~----~~-~~ 304 (400)
T COG3071 235 ---LLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL-GDHDEAQEIIEDALKRQWDPRLCR----LI-PR 304 (400)
T ss_pred ---HHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc-CChHHHHHHHHHHHHhccChhHHH----HH-hh
Confidence 111122223334434455554433 455556666788888888 899999999999999988887322 22 24
Q ss_pred hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010739 317 QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAV 395 (502)
Q Consensus 317 ~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 395 (502)
.+ ++.+.-.+..+.-...-...+ ..+.+|-.-|.+++.+.+|...|+.-. ...|+..+|+-+-+++.+.|+...|
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHH
Confidence 44 666666665554343333333 488899999999999999999999544 6789999999999999999999999
Q ss_pred HHHHHHHHHcCCCCC
Q 010739 396 SRLLSRIEVMNSLCK 410 (502)
Q Consensus 396 ~~l~~~m~~~~~~p~ 410 (502)
.++.++-...-..|+
T Consensus 381 ~~~r~e~L~~~~~~~ 395 (400)
T COG3071 381 EQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999977654444443
No 46
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=3.3e-09 Score=63.85 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 406 NSLCKKKTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 406 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 47
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=5.5e-06 Score=83.36 Aligned_cols=288 Identities=14% Similarity=0.066 Sum_probs=197.0
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH-H
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM-V 246 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~-~ 246 (502)
..|+.++|+..+++-.+. +......+...-..|.+.|+.++|..++..+.+++ |+-..|-. .+..+. .
T Consensus 16 e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~--------~L~~~~g~ 84 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYR--------GLEEALGL 84 (517)
T ss_pred HCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHH--------HHHHHHhh
Confidence 789999999999875443 44456677888899999999999999999999988 77766654 333333 1
Q ss_pred -----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHH-HHHHHHHHHHHcCCCCchhchHHHHHHHHhc-C
Q 010739 247 -----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFG-KALRKLKGYVRAGSIAELDGKNLGLIEKYQS-D 319 (502)
Q Consensus 247 -----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g 319 (502)
..+.+...++|+++...- |.....--+.-.+... ..+. .+...+..+...|+ |..+ + .|-..|.. .
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g-~~F~~~~~~yl~~~l~Kgv-PslF--~-~lk~Ly~d~~ 157 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEG-DEFKERLDEYLRPQLRKGV-PSLF--S-NLKPLYKDPE 157 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCH-HHHHHHHHHHHHHHHhcCC-chHH--H-HHHHHHcChh
Confidence 236788888999887662 4443333333333322 3443 34444555577776 4333 2 46667777 7
Q ss_pred cHHhHHHHHHHHHHcC-------------CCCchHhHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 010739 320 LLADGSRLSSWAIQEG-------------GSSLYGVVH--ERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVL 383 (502)
Q Consensus 320 ~~~~a~~~~~~m~~~~-------------~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li 383 (502)
+.+-..+++....... ..++....| .-+-..|-..|+.++|++.+++..++ .|+ +..|..--
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 7776777776654331 112333334 45566677899999999999998876 576 45566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHcc
Q 010739 384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDR----VAVLQGLRKR 459 (502)
Q Consensus 384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~ll~~~~~~ 459 (502)
..+.+.|++.+|.+.++..+..... |...=+-....+.++|++++|.+++......+..|-...+ ...+..+..+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988844 7777777999999999999999999999887764433211 2222223233
Q ss_pred ccccccHHHHHHHHhhh
Q 010739 460 IQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 460 ~~~~~~~~~a~~~~~~m 476 (502)
....|+...|++.|...
T Consensus 315 ~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 33367777777765444
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=2e-06 Score=85.12 Aligned_cols=282 Identities=10% Similarity=-0.009 Sum_probs=189.7
Q ss_pred hccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC--CCCCCccccccCCCCchHHHHHHHH
Q 010739 169 ERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG--IAYAEGDGEGQQGGPTGYLAWKMMV 246 (502)
Q Consensus 169 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~ty~~~~~~~~~~~~~~~~~ 246 (502)
.-+..+|...|+..... +.-+..+..-+-.+|...+++++|+++|+...+.. ..-+...|.+ ++|..-.
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST--------~LWHLq~ 402 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST--------TLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH--------HHHHHHh
Confidence 45677889999885554 33334677778899999999999999999998665 2345566766 7776643
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHHHhc-CcHHhH
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~~~~-g~~~~a 324 (502)
. -++.++.+-.-.--+-.+.||.++-++|.-. ++.+.|++.|+.-+. ++| ....|+ .+-.-+.. ..+|.|
T Consensus 403 ~----v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQ--ldp~faYayT-LlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 403 E----VALSYLAQDLIDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQ--LDPRFAYAYT-LLGHESIATEEFDKA 474 (638)
T ss_pred h----HHHHHHHHHHHhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhc--cCCccchhhh-hcCChhhhhHHHHhH
Confidence 2 2222222221111233468888999999988 899999887766533 344 455554 23333666 888899
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL-YDIVLAICASQNEGSAVSRLLSRIE 403 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~l~~~m~ 403 (502)
.+.|+..+.-....-+ .|--+-..|.+.++++.|+-.|++.. .+.|.... ...+-..+-+.|+.++|.++++...
T Consensus 475 ~~~fr~Al~~~~rhYn--AwYGlG~vy~Kqek~e~Ae~~fqkA~--~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 475 MKSFRKALGVDPRHYN--AWYGLGTVYLKQEKLEFAEFHFQKAV--EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHHhhhcCCchhhH--HHHhhhhheeccchhhHHHHHHHhhh--cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 9988765544333323 66667778889999999999998776 46665443 3334466777889999999998887
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739 404 VMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD-RVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
..... |...--.....+...++.++|+..|+++++ +.|+..+ |..+-..|.+ -|+.+.|+.-|.-+.+
T Consensus 551 ~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~----~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 551 HLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKR----LGNTDLALLHFSWALD 619 (638)
T ss_pred hcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHH----HccchHHHHhhHHHhc
Confidence 76633 444444466667778899999999999875 4566655 4444444544 6777888877655533
No 49
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=2.2e-05 Score=79.14 Aligned_cols=291 Identities=11% Similarity=0.039 Sum_probs=195.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCChHH-HHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010739 121 VYFSQEGRDSWCALEVFEWLKKENRVDNET-MELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVIS 199 (502)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 199 (502)
..+...|++ +.|++.++.-.+. .+|... +......+. +-|+.++|...+..+.+.+- -|..-|..+..
T Consensus 12 ~il~e~g~~-~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~--------kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~ 80 (517)
T PF12569_consen 12 SILEEAGDY-EEALEHLEKNEKQ-ILDKLAVLEKRAELLL--------KLGRKEEAEKIYRELIDRNP-DNYDYYRGLEE 80 (517)
T ss_pred HHHHHCCCH-HHHHHHHHhhhhh-CCCHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHH
Confidence 455778999 8999999775444 366554 444444444 89999999999999998754 35566666666
Q ss_pred HHHhc-----CcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcH-HHHHHHHHHHHHcCCCCCHhHHH
Q 010739 200 LYWEM-----EKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKY-VDAIKLVIHLRESGLKPEVYSYL 273 (502)
Q Consensus 200 ~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~ty~ 273 (502)
+..-. .+.+...++++++.+.- |....... +...++....+ ..+..++..+..+|+++ +|+
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~r--------l~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~ 147 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRR--------LPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFS 147 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhH--------hhcccCCHHHHHHHHHHHHHHHHhcCCch---HHH
Confidence 66332 35788899999987665 22211111 33333322233 34455667777777643 445
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHc----C----------CCCchhchHHHHHHH-Hhc-CcHHhHHHHHHHHHHcCCC
Q 010739 274 IALTAVVKELNEFGKALRKLKGYVRA----G----------SIAELDGKNLGLIEK-YQS-DLLADGSRLSSWAIQEGGS 337 (502)
Q Consensus 274 ~li~~~~~~~~~~~~a~~~~~~m~~~----g----------~~p~~~~~~~~li~~-~~~-g~~~~a~~~~~~m~~~~~~ 337 (502)
.+-..|... .+..-..+++.++... + -.|....|...++.. |.. |+.++|++..++.+.....
T Consensus 148 ~lk~Ly~d~-~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt 226 (517)
T PF12569_consen 148 NLKPLYKDP-EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT 226 (517)
T ss_pred HHHHHHcCh-hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 555555555 4555566666665322 1 123333343334444 777 9999999999998888755
Q ss_pred CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---
Q 010739 338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL--- 414 (502)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~--- 414 (502)
.++ .|..--..|-+.|++++|.+.+++.+.... -|...=+-....+-+.|++++|.+++......+..|-...+
T Consensus 227 ~~e--ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 227 LVE--LYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred cHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 555 888888889999999999999999886543 26666667778999999999999999888776654443333
Q ss_pred -HH----HHHHHHhCCCHHHHHHHHHHHHH
Q 010739 415 -SW----LLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 415 -~~----li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
.| .-.+|.+.|++..|++-|....+
T Consensus 304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23 55678899999998877766543
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=98.76 E-value=4.2e-06 Score=86.72 Aligned_cols=146 Identities=12% Similarity=-0.049 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 010739 131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERA 210 (502)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A 210 (502)
..|...++...+...-+...+..+-..+. ..|++++|...|++..+.+ +-+...|..+-..|...|++++|
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~--------~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINT--------IHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 46666666666655335555555544333 5566667777766666542 22345566666666666777777
Q ss_pred HHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHH
Q 010739 211 VLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKA 289 (502)
Q Consensus 211 ~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a 289 (502)
...+++..+.+ |+...+.. ...+.+...|++++|++.+++..... .|+ ...+..+-.++... |+.++|
T Consensus 392 i~~~~~Al~l~--P~~~~~~~-------~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~-G~~~eA 460 (553)
T PRK12370 392 LQTINECLKLD--PTRAAAGI-------TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLK-GKHELA 460 (553)
T ss_pred HHHHHHHHhcC--CCChhhHH-------HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhC-CCHHHH
Confidence 76666665544 22110000 02233444566666666666554432 232 22334444444555 566666
Q ss_pred HHHHHHH
Q 010739 290 LRKLKGY 296 (502)
Q Consensus 290 ~~~~~~m 296 (502)
...+.++
T Consensus 461 ~~~~~~~ 467 (553)
T PRK12370 461 RKLTKEI 467 (553)
T ss_pred HHHHHHh
Confidence 6655554
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=5.6e-06 Score=82.05 Aligned_cols=182 Identities=15% Similarity=0.056 Sum_probs=92.1
Q ss_pred hCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHH---HHhc-CcH
Q 010739 247 EGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIE---KYQS-DLL 321 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~---~~~~-g~~ 321 (502)
+++.+.|++.|++-.+ +.| ..++|+.+-+-+... .++|+|...|+.- +..|...|| +.-. .|.| +++
T Consensus 434 Qkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~-ee~d~a~~~fr~A----l~~~~rhYn-AwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIAT-EEFDKAMKSFRKA----LGVDPRHYN-AWYGLGTVYLKQEKL 505 (638)
T ss_pred hhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhh-HHHHhHHHHHHhh----hcCCchhhH-HHHhhhhheeccchh
Confidence 4555555555554432 233 344555554455555 4555555544332 233444444 2222 2555 666
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR 401 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~ 401 (502)
+.|+-.|++.++-. +.+.+.-..+...+-+.|+.++|++++++.....-+ |..+---....+...++.++|.+.+++
T Consensus 506 e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 506 EFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 66666665544332 223344444555556666666666666665533221 222222223334445666666666666
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 402 IEVMNSLC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 402 m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
+++.- | +...|..+.+.|.+.|+.+.|+.-|.-|.+..
T Consensus 583 Lk~~v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 583 LKELV--PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHhC--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 66542 3 34444446666666677777766666665544
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.75 E-value=5.3e-06 Score=82.57 Aligned_cols=258 Identities=18% Similarity=0.143 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-----CC-CCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc-
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLSR-----GI-AYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES- 263 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-----~~-~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~- 263 (502)
..+...|...|...|+++.|+.+++.-.+. |. -|.+.+- ...+...+...+++++|..+|+++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~-------l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM-------LNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456777999999999999999999877654 20 0110000 000222333359999999999998753
Q ss_pred ----C-CCCC-HhHHHHHHHHHHhccccHHHHHHHHHHH--H-Hc--C-CCCchhchHHHHHHHHhc-CcHHhHHHHHHH
Q 010739 264 ----G-LKPE-VYSYLIALTAVVKELNEFGKALRKLKGY--V-RA--G-SIAELDGKNLGLIEKYQS-DLLADGSRLSSW 330 (502)
Q Consensus 264 ----g-~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m--~-~~--g-~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~ 330 (502)
| ..|. ..|++.|-.+|++. |++++|...++.- + +. | ..|++....+.+...|.. +++++|..++..
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 2 2333 35677777889999 7999998887654 1 11 2 234444443345555777 999999999876
Q ss_pred HHHcC---CCCc---hHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCChhHHHH
Q 010739 331 AIQEG---GSSL---YGVVHERLLAMYICAGRGLEAERQLWEMKLV----GK--EAD-GDLYDIVLAICASQNEGSAVSR 397 (502)
Q Consensus 331 m~~~~---~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p~-~~t~~~li~~~~~~~~~~~a~~ 397 (502)
....- .... -.-+|+.|-..|.+.|++++|++++++.... +- .+. ...++.+-..|.+.+..++|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 54422 1111 2357899999999999999999999987543 12 222 4556777789999999999999
Q ss_pred HHH----HHHHcCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---C---CCCCCHHHHHHHHHHH
Q 010739 398 LLS----RIEVMNSL-C-KKKTLSWLLRGYIKGGHINDAAETLTKMLD---L---GLYPEYMDRVAVLQGL 456 (502)
Q Consensus 398 l~~----~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~---g~~p~~~t~~~ll~~~ 456 (502)
+|. .|+.+|.. | ...+|.-|...|.+.|++++|.++.+.... . +..|+..........+
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADL 501 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHH
Confidence 985 44556642 2 245666799999999999999999887652 1 2456555555444443
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=98.75 E-value=1.4e-05 Score=82.81 Aligned_cols=201 Identities=8% Similarity=-0.017 Sum_probs=97.5
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC-HHHHHHHHHHHH---------hcCcHHHHHHHHHH
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG-FSMIEKVISLYW---------EMEKKERAVLFVKA 216 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~---------~~g~~~~A~~l~~~ 216 (502)
+...|...+++....... ..+.+++|..+|++..+. .|+ ...|..+-.+|. ..+++++|...+++
T Consensus 255 ~~da~~~~lrg~~~~~~~---~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQY---TPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred ChHHHHHHHHhHHHHHcc---CHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 556666666654311111 245677888888887763 443 344554444433 22346667776666
Q ss_pred HHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHH
Q 010739 217 VLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLK 294 (502)
Q Consensus 217 m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~ 294 (502)
..+.+ |+.. .+.. +...+...|++++|...|++..+. .|+ ...+..+-..+... |+.++|...++
T Consensus 330 Al~ld--P~~~~a~~~--------lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~-G~~~eAi~~~~ 396 (553)
T PRK12370 330 ATELD--HNNPQALGL--------LGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMA-GQLEEALQTIN 396 (553)
T ss_pred HHhcC--CCCHHHHHH--------HHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 65543 3211 1111 222233356666666666666554 233 34455555555556 56666666666
Q ss_pred HHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 295 GYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 295 ~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
+..+. .|+...+...+...+.. |++++|...+++......+. +...+..+-..|...|+.++|...+.++.
T Consensus 397 ~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~-~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD-NPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc-CHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 65333 22211110011222222 55555655555544332111 22234444455555555555555555543
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.73 E-value=5.3e-05 Score=78.35 Aligned_cols=321 Identities=13% Similarity=0.042 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHH----HHhhCCCCCCHHHHHHHHHHHHhcCc
Q 010739 131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLV----DMDCVGLKPGFSMIEKVISLYWEMEK 206 (502)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~y~~li~~~~~~g~ 206 (502)
+.|..+.....+.-..|...|-.+-..+ ..++...++.+|. .|...+-.+-+...|.+-..+...|+
T Consensus 397 d~a~~~l~K~~~~~~~d~~a~l~laql~---------e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTPVDSEAWLELAQLL---------EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHH---------HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 4555666555555445666776665533 3444444455544 34456666788899999999999999
Q ss_pred HHHHHHHHHHHHHc---CCCCCCc-cccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010739 207 KERAVLFVKAVLSR---GIAYAEG-DGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTA 278 (502)
Q Consensus 207 ~~~A~~l~~~m~~~---~~~p~~~-ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~ 278 (502)
++.|...|++.... ...+|.. +-+ -.+-+|..+ -++.+.|.++|...... .|+-++--.=+.+
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~-------lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTN-------LTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccch-------hHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 99999999998766 2333332 010 013455544 37889999999998876 4554432222223
Q ss_pred HHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHH-HHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH--
Q 010739 279 VVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIE-KYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC-- 353 (502)
Q Consensus 279 ~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~-~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-- 353 (502)
.++..+...+|...+++. .-..-.|+..+ ++. .|.+ ..+.-|.+-|+.........+|.++.-+|-+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~ars----l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARS----LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHH----HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 333325677887777766 33444566654 444 5666 77777888776666655444563443344443332
Q ss_pred ----------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739 354 ----------AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK 423 (502)
Q Consensus 354 ----------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 423 (502)
.+..++|+.+|.+..... .-|.+.-|-+=-.++..|+++.|..+|...++... -+..+|--+-++|..
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 245667888887766432 22455556666677888889999999988877664 244566668888888
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 424 GGHINDAAETLTKMLDLG-LYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 424 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
.|++-.|+++|+.....- -.-+......|-.++.. .|.+.++.+.+......
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~----~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE----AGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHh
Confidence 899999999888866543 34566667777777766 67777777765554443
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.66 E-value=0.00023 Score=73.25 Aligned_cols=331 Identities=16% Similarity=0.108 Sum_probs=232.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+...-..+++ |+. +.|.+++.+..+........|-.|-.++- +.|+.+++...+--.--. -+-|...|-
T Consensus 143 l~eAN~lfar-g~~-eeA~~i~~EvIkqdp~~~~ay~tL~~IyE--------qrGd~eK~l~~~llAAHL-~p~d~e~W~ 211 (895)
T KOG2076|consen 143 LGEANNLFAR-GDL-EEAEEILMEVIKQDPRNPIAYYTLGEIYE--------QRGDIEKALNFWLLAAHL-NPKDYELWK 211 (895)
T ss_pred HHHHHHHHHh-CCH-HHHHHHHHHHHHhCccchhhHHHHHHHHH--------HcccHHHHHHHHHHHHhc-CCCChHHHH
Confidence 4444456666 999 89999999999988567888998888776 889999998866443332 344678899
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH----HhCcHHHHHHHHHHHHHcCCCCCHhH
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM----VEGKYVDAIKLVIHLRESGLKPEVYS 271 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t 271 (502)
.+-....+.|++++|.-.|.+..+.. |+..- ++|.-. +.|+...|.+.|.++....-..|..-
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~-----------~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN--PSNWE-----------LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CcchH-----------HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 99999999999999999999988776 32211 333332 25999999999999987633223332
Q ss_pred HH----HHHHHHHhccccHHHHHHHHHHHHH-cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCC-------
Q 010739 272 YL----IALTAVVKELNEFGKALRKLKGYVR-AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSS------- 338 (502)
Q Consensus 272 y~----~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~------- 338 (502)
+. .+++.+... ++.+.|++.++.... .+-.-+...++ .+...|.+ ..++.|......+......+
T Consensus 279 ~~d~i~~~~~~~~~~-~~~e~a~~~le~~~s~~~~~~~~ed~n-i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITH-NERERAAKALEGALSKEKDEASLEDLN-ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhccccccccHHH-HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 33 345556666 667999998888844 33344555666 47788888 88888888776666511000
Q ss_pred --------------chHhHHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 010739 339 --------------LYGVVHE----RLLAMYICAGRGLEAERQLWEMKLVGKEA--DGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 339 --------------~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
.+..+|+ -+.-++......+....+..-..+..+.| +...|--+..++...|.+..|..+
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 0111121 23344555555555666666666666443 566788888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~ 477 (502)
+..+......-+...|--+-.+|-..|..++|.+.|+..+.. .|+-.--.+=+..+.. +.|+.++|.+.+..+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~---~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQ---QLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHH---hcCCHHHHHHHHhccc
Confidence 999887665556777878999999999999999999998764 4554433333333322 2688999999988864
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=0.00031 Score=67.07 Aligned_cols=183 Identities=13% Similarity=0.068 Sum_probs=97.2
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA 322 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~ 322 (502)
...++.++|...|++-.+. .|. ...|+.+-+-|... +....|.+-++.-++-. +.|-..|- .|-.+|.- +...
T Consensus 341 Slr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEm-KNt~AAi~sYRrAvdi~-p~DyRAWY-GLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEM-KNTHAAIESYRRAVDIN-PRDYRAWY-GLGQAYEIMKMHF 415 (559)
T ss_pred HHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHh-cccHHHHHHHHHHHhcC-chhHHHHh-hhhHHHHHhcchH
Confidence 3346666677666665543 333 24455555666666 55666655555443321 11223332 46666666 6666
Q ss_pred hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
-|+-.|++..+ ..|.|...|.+|-.+|.+.++.++|...|.+....|-. +...|..+-..+-+.++.++|.+.++.-
T Consensus 416 YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 416 YALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66666655433 23334456666666666666666776666666654422 4455666666666666666666655332
Q ss_pred ----HHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739 403 ----EVMNSLCK--KKTLSWLLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 403 ----~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~ 435 (502)
...|..-+ ...--+|-.-+.+.+++++|.....
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 22232211 1122224455556666666654433
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=2.1e-05 Score=74.35 Aligned_cols=271 Identities=8% Similarity=-0.004 Sum_probs=176.3
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE--MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~--~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~ 245 (502)
+.|+++.|++++.-..+..-+.-...-|.|-..+.- -.++.+|.+.-+.. .+..-||.....- --....
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a------ln~dryn~~a~~n---kgn~~f 501 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA------LNIDRYNAAALTN---KGNIAF 501 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH------hcccccCHHHhhc---CCceee
Confidence 677788887777777665433222223322222222 23455555544433 3334444300000 001122
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a 324 (502)
.+|++++|.+.|++-....-......||+=+.+-.. |.+++|++.|-.+...-. -+..+.- -+.+.|.. .+...|
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~--~~ldeald~f~klh~il~-nn~evl~-qianiye~led~aqa 577 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEAL--GNLDEALDCFLKLHAILL-NNAEVLV-QIANIYELLEDPAQA 577 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHh--cCHHHHHHHHHHHHHHHH-hhHHHHH-HHHHHHHHhhCHHHH
Confidence 369999999999998877544455566655544333 579999998876622111 1222211 24555777 888888
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
.+++. ......+.|.....-|-.-|-+.|+-.+|++.+-+--. =+..+..|...|-..|....-++.+...|+....
T Consensus 578 ie~~~--q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 578 IELLM--QANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHH--HhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 88773 33445566778999999999999999999987654321 2455778888888888888888999999987654
Q ss_pred cCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739 405 MNSLCKKKTLSWLLRGYI-KGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR 457 (502)
Q Consensus 405 ~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 457 (502)
++|+..-|..||..|. +.|++.+|++++++.-+ .+.-|..+...|+.-|.
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~ 705 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAG 705 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhc
Confidence 4799999999887655 67999999999998644 56677778887877774
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.55 E-value=0.00024 Score=73.68 Aligned_cols=242 Identities=10% Similarity=-0.024 Sum_probs=132.6
Q ss_pred CcHHHHHHHHHH----HHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHc---CCCCchh-------chHHHHH
Q 010739 248 GKYVDAIKLVIH----LRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRA---GSIAELD-------GKNLGLI 313 (502)
Q Consensus 248 g~~~~a~~~~~~----m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~-------~~~~~li 313 (502)
++...++..|.. |...+-.+.....|.+-...... |.+++|...|.+-... -..+|.. -|| +-
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~-g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN--la 503 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL-GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN--LA 503 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh-cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH--HH
Confidence 555555555443 34445557777777777777777 6788887777666322 1222221 233 33
Q ss_pred HHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-C------------------C-
Q 010739 314 EKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-G------------------K- 372 (502)
Q Consensus 314 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g------------------~- 372 (502)
..... ++.+.|.+.+..+.+......| .|--+....-..+...+|...+.+..+. . .
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId--~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYID--AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHH--HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 33444 6677777777665555443333 3333331111234444555554443321 1 1
Q ss_pred ---------------CCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 373 ---------------EADGDLYDIVLAICAS------------QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 373 ---------------~p~~~t~~~li~~~~~------------~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
.+|++...+|=..|.. .+..+.|.++|....... .-|...-|-+--.++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 1333333222221211 112234555555554443 224555555777788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC------chhHHHHHHHhhcchhhh
Q 010739 426 HINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL------IGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 426 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~------~~~~li~~y~~~g~~~~~ 499 (502)
++.+|..+|.+.++.+. -+.-+|..+-..|.. .|++-.|++.|+......+ +...|-.+|-++|.+-.+
T Consensus 661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e----~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVE----QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH----HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999888764 233355666666765 5778888877766544332 556677777777776554
Q ss_pred h
Q 010739 500 K 500 (502)
Q Consensus 500 ~ 500 (502)
+
T Consensus 736 k 736 (1018)
T KOG2002|consen 736 K 736 (1018)
T ss_pred H
Confidence 3
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.53 E-value=3.4e-05 Score=76.94 Aligned_cols=233 Identities=16% Similarity=0.100 Sum_probs=155.6
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHc-----C-CCCCHhHH-HHHHHHHHhccccHHHHHHHHHHHH---HcCCCCchhchH
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRES-----G-LKPEVYSY-LIALTAVVKELNEFGKALRKLKGYV---RAGSIAELDGKN 309 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~ty-~~li~~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~~~~ 309 (502)
+...+...|+++.|+.++++-.+. | ..|...+. +.+-..|... +++++|..+|+++. +..+-++.....
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 445555579999999999976554 3 23333332 3345566666 79999999999883 222223332222
Q ss_pred HHHHH---HHhc-CcHHhHHHHHHHHHHc-----CCCCchHh-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC-
Q 010739 310 LGLIE---KYQS-DLLADGSRLSSWAIQE-----GGSSLYGV-VHERLLAMYICAGRGLEAERQLWEMKLV---GKEAD- 375 (502)
Q Consensus 310 ~~li~---~~~~-g~~~~a~~~~~~m~~~-----~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~- 375 (502)
+.+++ .|.+ |++++|...+++..+- +...+++. -++.+...++..+++++|..++....+. -..++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 23444 4888 9999999988765432 22333332 4566777788899999999998875432 22333
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCC
Q 010739 376 ---GDLYDIVLAICASQNEGSAVSRLLSRIEVM----NS--LC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDL--GLY 443 (502)
Q Consensus 376 ---~~t~~~li~~~~~~~~~~~a~~l~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~ 443 (502)
..+++.|-..+-+.|++++|.++++..... +. .+ ....++.|-..|.+.++.++|.++|.+-..- -+.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 367899999999999999999999755322 11 22 2456677888999999999999999875432 133
Q ss_pred CCH----HHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739 444 PEY----MDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 444 p~~----~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~ 477 (502)
|+. .+|..|...|.. -|+.+.|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~----~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRA----QGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHH----cccHHHHHHHHHHHH
Confidence 444 345556666655 899999999877663
No 60
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00042 Score=66.22 Aligned_cols=284 Identities=10% Similarity=-0.001 Sum_probs=182.8
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CC-CCCccccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG-IA-YAEGDGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~-~~-p~~~ty~~~~~~~~~~~~~~~~ 245 (502)
.-.+.+++..-.+.....|++-+...-+-.-.+.-...|+++|+.+|+++...+ .. -|..||+. +++.--
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN--------~LYv~~ 310 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN--------VLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH--------HHHHHh
Confidence 344677777777777777776554444444445556788999999999988764 11 13344433 222111
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a 324 (502)
. ...+.++.+-...--+--+.|..++-+-|+-. ++.++|...|+.-++. .|......+.+-.-|.. .+...|
T Consensus 311 --~--~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr-~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 311 --D--KSKLSYLAQNVSNIDKYRPETCCIIANYYSLR-SEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred --h--hHHHHHHHHHHHHhccCCccceeeehhHHHHH-HhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHH
Confidence 1 11222222222221122334555666667666 6889998888776554 34444433334444888 888888
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIE 403 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~ 403 (502)
.+-+++.++- .+.|-..|-.|-.+|.-.+...=|+-.|++..+ ++| |...|.+|=.+|.+.++.++|.+-+....
T Consensus 384 i~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 384 IESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888776654 344556888889999888888888888887764 566 66778888889999999999999998887
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHH-HccccccccHHHHHHHHhh
Q 010739 404 VMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD----LGLYPE-YMDRVAVLQGL-RKRIQQSGNVEAYLNLCKR 475 (502)
Q Consensus 404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~~~-~~~~~~~~~~~~a~~~~~~ 475 (502)
..|-. +...+..|-+.|-+-++.++|...|++-++ .|..-+ ..--...+.-+ .+ .++.++|......
T Consensus 460 ~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k----~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 460 LLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK----MKDFDEASYYATL 532 (559)
T ss_pred hcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh----hcchHHHHHHHHH
Confidence 77743 678888899999999999999888877654 343333 22222222222 34 5677776665433
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.47 E-value=0.0021 Score=64.15 Aligned_cols=346 Identities=11% Similarity=-0.022 Sum_probs=212.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHH----HhhCCCCCCHHHHHHH
Q 010739 122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVD----MDCVGLKPGFSMIEKV 197 (502)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~y~~l 197 (502)
+|++...+ +.|..++....+.-..|...|-+-.. + .+..|+++....++++ +...|+..|..-|-.=
T Consensus 415 AlarLetY-enAkkvLNkaRe~iptd~~IWitaa~-L-------EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 415 ALARLETY-ENAKKVLNKAREIIPTDREIWITAAK-L-------EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHHHHHHH-HHHHHHHHHHHhhCCCChhHHHHHHH-H-------HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 44444445 45555555554444335555543322 1 1255666666555543 3345555565555555
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCCCC--ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010739 198 ISLYWEMEKKERAVLFVKAVLSRGIAYAE--GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIA 275 (502)
Q Consensus 198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 275 (502)
-..|-+.|..-.+..+......-|+.-.. .|+.. ....+.+.+.++-|..+|....+. +.-+...|.-.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~--------da~~~~k~~~~~carAVya~alqv-fp~k~slWlra 556 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLD--------DAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRA 556 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhh--------hHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHH
Confidence 55555556555555555555544433111 12222 334444456677777777766543 33334445444
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739 276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA 354 (502)
Q Consensus 276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 354 (502)
...=-.. |..++-..+|.+.+.. .|-...+.......+-. |++..|..++....+...... ..|-+-+.--..+
T Consensus 557 ~~~ek~h-gt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse--eiwlaavKle~en 631 (913)
T KOG0495|consen 557 AMFEKSH-GTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE--EIWLAAVKLEFEN 631 (913)
T ss_pred HHHHHhc-CcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH--HHHHHHHHHhhcc
Confidence 4433334 6778877777777443 35555554223333555 999999999988766654443 4898888889999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHH
Q 010739 355 GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAET 433 (502)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l 433 (502)
.++++|..+|.+... ..|+...|.--+..-...++.++|.+++++..+. -|+ ...|-.+-+.+-+.++++.|.+.
T Consensus 632 ~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 632 DELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred ccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999998775 5677777777666667778999999999665432 344 33455566677788888888887
Q ss_pred HHHHHHCCC--CCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc----CCchhHHHHHHHhhcchhhhhc
Q 010739 434 LTKMLDLGL--YPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT----SLIGPCLVYLYIKKYKLWIIKM 501 (502)
Q Consensus 434 ~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~li~~y~~~g~~~~~~~ 501 (502)
|.. |+ -|+..-.-.++.-+-. ..|.+-.|..+++...-. ..++-..|.+=.|.|+.+.++.
T Consensus 708 Y~~----G~k~cP~~ipLWllLakleE---k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 708 YLQ----GTKKCPNSIPLWLLLAKLEE---KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHh----ccccCCCCchHHHHHHHHHH---HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 765 53 3776666666666532 156777787777766322 2256678888888888887754
No 62
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.44 E-value=3.5e-07 Score=55.76 Aligned_cols=35 Identities=34% Similarity=0.192 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG 376 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 376 (502)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=0.002 Score=61.89 Aligned_cols=323 Identities=9% Similarity=-0.049 Sum_probs=158.8
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 010739 124 SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE 203 (502)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 203 (502)
-..|+. ..|.++|+.-.+- .|+...|++.|+-=. +-+.++.|..+++...- +.|++.+|-.-.+.=-+
T Consensus 152 E~LgNi-~gaRqiferW~~w-~P~eqaW~sfI~fEl--------RykeieraR~IYerfV~--~HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 152 EMLGNI-AGARQIFERWMEW-EPDEQAWLSFIKFEL--------RYKEIERARSIYERFVL--VHPKVSNWIKYARFEEK 219 (677)
T ss_pred HHhccc-HHHHHHHHHHHcC-CCcHHHHHHHHHHHH--------HhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHh
Confidence 334555 4666666544332 256666666666333 55666666666665543 34666666555555556
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHcCCCCC--HhHHHHHHH
Q 010739 204 MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRESGLKPE--VYSYLIALT 277 (502)
Q Consensus 204 ~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~~p~--~~ty~~li~ 277 (502)
+|....|.++|+...+.=-. |. ....+..++.. +..++.|.-+|+--... ++-+ ...|.....
T Consensus 220 ~g~~~~aR~VyerAie~~~~-d~---------~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGD-DE---------EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTA 288 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhh-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHH
Confidence 66666666666544322100 00 00001111111 24555555555544433 2111 122222221
Q ss_pred HHHhcc--ccHHHHHHH-----HHHHH-HcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739 278 AVVKEL--NEFGKALRK-----LKGYV-RAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLL 348 (502)
Q Consensus 278 ~~~~~~--~~~~~a~~~-----~~~m~-~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 348 (502)
-=-+-| ...++++-- +++++ +.+. |-.++- -.+..-.. |+.+...++|++.+.+-.|...-..|...|
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~--nYDsWf-dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY--NYDSWF-DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYI 365 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC--CchHHH-HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHH
Confidence 111111 223333221 22221 1221 222222 34555556 888888888888776654432222333222
Q ss_pred HH---HH-----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010739 349 AM---YI-----CAGRGLEAERQLWEMKLVGKEADGDLYDIVLAIC----ASQNEGSAVSRLLSRIEVMNSLCKKKTLSW 416 (502)
Q Consensus 349 ~~---~~-----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~----~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~ 416 (502)
-- |+ ...+++.+.++|....+ =++-...||.-+=-.| .++.++..|.+++.... |.-|-..+|-.
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~ 442 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHH
Confidence 21 11 25677777777777665 2222344554443322 34566677777776544 55577777777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739 417 LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~ 480 (502)
.|..=.+.+++|.+..++++.++-+- -|..+|.-.-.-=.. -|+.+.|..+|....+..
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~----LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETS----LGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHH----hhhHHHHHHHHHHHhcCc
Confidence 77777777777777777777766441 133333322222122 466677777766665444
No 64
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.41 E-value=4.4e-07 Score=55.29 Aligned_cols=35 Identities=31% Similarity=0.565 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010739 412 KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY 446 (502)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 446 (502)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=4.8e-05 Score=69.23 Aligned_cols=227 Identities=12% Similarity=-0.013 Sum_probs=170.8
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS- 318 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~- 318 (502)
+-..+++-|.+.+|.+.|+.-... .|-+.||..+-.+|.+. .+.+.|+.++.+-++. .|..+||-.-+-+.+..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRI-DQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 344555679999999999887765 67777888899999999 8999999988776433 57777775555666888
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
+..++|.+++++..+..... +....++-.+|...++++-|+..++++.+.|+. +...|+.+--+|.-.+.+|.+..-
T Consensus 304 ~~~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999877665433 336666777888899999999999999999986 456677776777778899998888
Q ss_pred HHHHHHcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 399 LSRIEVMNSLCKK--KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 399 ~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
|+.....--.|+. ++|.-+-...+-.|++..|.+.|+-.+...-. +...++.|----.+ .|++++|..+++..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r----~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAAR----SGDILGARSLLNAA 455 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhh----cCchHHHHHHHHHh
Confidence 8776665555554 34555666677889999999999987766532 33445444333234 69999999998776
Q ss_pred hhc
Q 010739 477 SDT 479 (502)
Q Consensus 477 ~~~ 479 (502)
.+.
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 543
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=4.9e-05 Score=69.21 Aligned_cols=237 Identities=12% Similarity=-0.003 Sum_probs=175.1
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
|-.=-+-+-++|.+.|.+.+|++.|+.-.+.. |-..||-. +...+..-.+++.|+.+|.+-.+. .|-.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfll--------LskvY~ridQP~~AL~~~~~gld~--fP~~ 289 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLL--------LSKVYQRIDQPERALLVIGEGLDS--FPFD 289 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHH--------HHHHHHHhccHHHHHHHHhhhhhc--CCch
Confidence 33334668899999999999999998877665 33344433 666677779999999999987754 6777
Q ss_pred hHHHH-HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739 270 YSYLI-ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL 347 (502)
Q Consensus 270 ~ty~~-li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 347 (502)
+||.. .-+.+-.. ++.++|.++++...+.. ..++.... ++-..|-- ++.+-|++.++++.+.|...+. .|+.+
T Consensus 290 VT~l~g~ARi~eam-~~~~~a~~lYk~vlk~~-~~nvEaiA-cia~~yfY~~~PE~AlryYRRiLqmG~~spe--Lf~Ni 364 (478)
T KOG1129|consen 290 VTYLLGQARIHEAM-EQQEDALQLYKLVLKLH-PINVEAIA-CIAVGYFYDNNPEMALRYYRRILQMGAQSPE--LFCNI 364 (478)
T ss_pred hhhhhhhHHHHHHH-HhHHHHHHHHHHHHhcC-Cccceeee-eeeeccccCCChHHHHHHHHHHHHhcCCChH--HHhhH
Confidence 77654 33344444 68899999998874431 11222222 35555666 9999999999999999987766 88888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 348 LAMYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
--+|...+++|-++.-|++....--.|+. ..|-.+=......|++..|.+-|+.....+ .-+...+|-|-..-.+.|
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcC
Confidence 88888899999999999988765555543 245445555567799999999998877665 336778888888889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 010739 426 HINDAAETLTKMLDLGLYPEY 446 (502)
Q Consensus 426 ~~~~A~~l~~~m~~~g~~p~~ 446 (502)
++++|..++....+ +.|+.
T Consensus 444 ~i~~Arsll~~A~s--~~P~m 462 (478)
T KOG1129|consen 444 DILGARSLLNAAKS--VMPDM 462 (478)
T ss_pred chHHHHHHHHHhhh--hCccc
Confidence 99999999998654 34543
No 67
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=8.5e-07 Score=53.65 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 010739 192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAY 224 (502)
Q Consensus 192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 224 (502)
.+||++|++|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 68
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.3e-06 Score=52.80 Aligned_cols=33 Identities=27% Similarity=0.116 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA 374 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (502)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 488999999999999999999999999888887
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.25 E-value=0.0058 Score=59.74 Aligned_cols=305 Identities=11% Similarity=0.009 Sum_probs=134.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
|..+-..+...|+. +.+...+....+.. .++...-.. +.+.+.. ..|++++|...+++..+. .+.|...
T Consensus 9 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~~------~~g~~~~A~~~~~~~l~~-~P~~~~a 79 (355)
T cd05804 9 HAAAALLLLLGGER-PAAAAKAAAAAQALAARATERERAH-VEALSAW------IAGDLPKALALLEQLLDD-YPRDLLA 79 (355)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHhccCCCHHHHHH-HHHHHHH------HcCCHHHHHHHHHHHHHH-CCCcHHH
Confidence 34444555555666 56666665555443 223222211 1222210 568888888888887664 2334434
Q ss_pred HHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 194 IEKVISLYWE----MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 194 y~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
++. ...+.. .+..+.+.+.++. .....|+...+. ..+...+...|++++|.+.+++..+.. +.+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~-------~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLL-------GMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 442 222222 3333444443332 111111110000 002223344566677766666666542 2223
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHcCC-CCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGYVRAGS-IAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL 348 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 348 (502)
..+..+-..+... |++++|...+.+.....- .|+.. ...|..+.
T Consensus 149 ~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~~~~~----------------------------------~~~~~~la 193 (355)
T cd05804 149 WAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCSSMLR----------------------------------GHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCcchh----------------------------------HHHHHHHH
Confidence 4445555555555 566666666555432211 11111 11333444
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhHHHHH--HHHHHHcCCCCCHHHHH--HHHHH
Q 010739 349 AMYICAGRGLEAERQLWEMKLVGK-EADGDLY-D--IVLAICASQNEGSAVSRL--LSRIEVMNSLCKKKTLS--WLLRG 420 (502)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~li~~~~~~~~~~~a~~l--~~~m~~~~~~p~~~~~~--~li~~ 420 (502)
..+...|++++|..++++...... .+..... + .++.-+...|....+.+. +..............+. ....+
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 555556666666666665532211 1111111 1 222222333333222222 11111000000111222 36667
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739 421 YIKGGHINDAAETLTKMLDLGLY------PEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 421 ~~~~g~~~~A~~l~~~m~~~g~~------p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~ 477 (502)
+...|+.++|..+++.+...... ....+-..++.+... ...|+.++|...+....
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~--~~~g~~~~A~~~L~~al 334 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA--FAEGNYATALELLGPVR 334 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH--HHcCCHHHHHHHHHHHH
Confidence 77788888888888887653322 111222334444320 11577888877766553
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.25 E-value=0.004 Score=62.15 Aligned_cols=289 Identities=11% Similarity=0.024 Sum_probs=191.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC----------
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV---------- 185 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~---------- 185 (502)
|..+-..|-.+|.. +.|..+|+...+..-+ +-+-|-...|.|...-. +..+++.|..+++.....
T Consensus 390 w~~faklYe~~~~l-~~aRvifeka~~V~y~---~v~dLa~vw~~waemEl-rh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 390 WVEFAKLYENNGDL-DDARVIFEKATKVPYK---TVEDLAEVWCAWAEMEL-RHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred HHHHHHHHHhcCcH-HHHHHHHHHhhcCCcc---chHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 77888888899999 8999999988766522 23444556777665544 788899999988765332
Q ss_pred -CCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCCccccccCCCCchHHHHHHHH----hCcHHHH
Q 010739 186 -GLKP------GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIA-YAEGDGEGQQGGPTGYLAWKMMV----EGKYVDA 253 (502)
Q Consensus 186 -g~~p------~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a 253 (502)
+.++ +...|...++.--..|-++....+++.+.+..+. |. ++.|+.. +.-++++
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--------------ii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--------------IIINYAMFLEEHKYFEES 530 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHhhHHHHHH
Confidence 1112 2344555566666678889999999999887743 33 4555544 4667888
Q ss_pred HHHHHHHHHcCCCCCH-hHHHHHHHHHHhc-c-ccHHHHHHHHHHHHHcCCCCchhchHHHHHHH-Hhc--CcHHhHHHH
Q 010739 254 IKLVIHLRESGLKPEV-YSYLIALTAVVKE-L-NEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-YQS--DLLADGSRL 327 (502)
Q Consensus 254 ~~~~~~m~~~g~~p~~-~ty~~li~~~~~~-~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-~~~--g~~~~a~~~ 327 (502)
.++|++=...=--|+. ..|++-+.-+.+. | .+++.|..+|++..+ |+.|...-+ +.|+-+ +.. |....|..+
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt-iyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT-IYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH-HHHHHHHHHHHhhHHHHHHHH
Confidence 8888754433223444 4566666655554 3 689999999999987 777654432 133333 333 888899999
Q ss_pred HHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHH
Q 010739 328 SSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL---AICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 328 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li---~~~~~~~~~~~a~~l~~~m~~ 404 (502)
+++....-.+..-...||+.|.--+..--+.....+|++..+. -||...-...| +.=++.|.++.|..++..-.+
T Consensus 609 yerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 609 YERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 9886554444434558999988777766666677788877764 66665544444 466788999999999865443
Q ss_pred c-CCCCCHHHHHHHHHHHHhCCCH
Q 010739 405 M-NSLCKKKTLSWLLRGYIKGGHI 427 (502)
Q Consensus 405 ~-~~~p~~~~~~~li~~~~~~g~~ 427 (502)
. ....+...|.+.=.-=.++|+-
T Consensus 687 ~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 687 ICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred cCCCcCChHHHHHHHHHHHhcCCH
Confidence 3 3333555666655555778883
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.20 E-value=0.0013 Score=62.31 Aligned_cols=223 Identities=9% Similarity=-0.118 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHcCC--CC--hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 010739 131 WCALEVFEWLKKENR--VD--NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK 206 (502)
Q Consensus 131 ~~a~~~~~~m~~~~~--~~--~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 206 (502)
+.++.-+..+..... |+ ...|..+-..+. ..|+.++|...|++..+.. +.+...|+.+-..|...|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~--------~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYD--------SLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 567777777775542 21 234554444444 7899999999999988753 3367899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcccc
Q 010739 207 KERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNE 285 (502)
Q Consensus 207 ~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~ 285 (502)
+++|...|+...+.+ |+. ..|.. ....+...|++++|++.|+...+. .|+.............. ++
T Consensus 114 ~~~A~~~~~~Al~l~--P~~~~a~~~--------lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~-~~ 180 (296)
T PRK11189 114 FDAAYEAFDSVLELD--PTYNYAYLN--------RGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESK-LD 180 (296)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHcc-CC
Confidence 999999999988654 442 11211 333344569999999999988765 45443222222222333 67
Q ss_pred HHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcC-----CCCchHhHHHHHHHHHHHcCChHHH
Q 010739 286 FGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEG-----GSSLYGVVHERLLAMYICAGRGLEA 360 (502)
Q Consensus 286 ~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A 360 (502)
.++|...+.+.... ..|+.. ...+...+ .|+...+ +.++.+.... ..+.....|..+-..+.+.|+.++|
T Consensus 181 ~~~A~~~l~~~~~~-~~~~~~--~~~~~~~~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 181 PKQAKENLKQRYEK-LDKEQW--GWNIVEFY-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHHHHhh-CCcccc--HHHHHHHH-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 99999988665322 233322 11233333 2444433 3444433221 1122334788888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 010739 361 ERQLWEMKLVGKEADGDLYDI 381 (502)
Q Consensus 361 ~~l~~~m~~~g~~p~~~t~~~ 381 (502)
...|++..+.. .||.+-+..
T Consensus 256 ~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 256 AALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHHHHHHhC-CchHHHHHH
Confidence 99999887644 234444433
No 72
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.002 Score=58.26 Aligned_cols=287 Identities=14% Similarity=0.088 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
+++..++..+.+..++ ..|++++..-.++...+....+.+-.++. ...++..|...++++-. ..|...-
T Consensus 11 Geftaviy~lI~d~ry-~DaI~~l~s~~Er~p~~rAgLSlLgyCYY--------~~Q~f~~AA~CYeQL~q--l~P~~~q 79 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARY-ADAIQLLGSELERSPRSRAGLSLLGYCYY--------RLQEFALAAECYEQLGQ--LHPELEQ 79 (459)
T ss_pred CchHHHHHHHHHHhhH-HHHHHHHHHHHhcCccchHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh--hChHHHH
Confidence 4466777777777777 67777776665555235555555555454 56677777777776654 2344333
Q ss_pred HHHH-HHHHHhcCcHHHHHHHHHHHHHcC------------CC----------------CCCccccccCCCCchHHHHHH
Q 010739 194 IEKV-ISLYWEMEKKERAVLFVKAVLSRG------------IA----------------YAEGDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 194 y~~l-i~~~~~~g~~~~A~~l~~~m~~~~------------~~----------------p~~~ty~~~~~~~~~~~~~~~ 244 (502)
|... -..+-+.+.+.+|+++...|.+.. ++ |...+-.+ ++...
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~--------~in~g 151 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADG--------QINLG 151 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccch--------hccch
Confidence 3321 123345556666666665554321 00 00000111 22222
Q ss_pred HH---hCcHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhc--h-HHHHHHHHh
Q 010739 245 MV---EGKYVDAIKLVIHLRES-GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDG--K-NLGLIEKYQ 317 (502)
Q Consensus 245 ~~---~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~~li~~~~ 317 (502)
|. .|++++|++-|+.-.+- |.+| ...||..+.-|.+. +.+.|++...+.+.+|+...+.. - .+-.++.-.
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~--qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs 228 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSR--QYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS 228 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhh--hHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc
Confidence 22 46666666666655443 3433 34455555555443 56666666666665555422110 0 000000000
Q ss_pred cCcH-HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHH
Q 010739 318 SDLL-ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-GKEADGDLYDIVLAICASQNEGSAV 395 (502)
Q Consensus 318 ~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a 395 (502)
-|+. .-+.. + -+..+|.-..-+.+.|+++.|.+-+-.|.-. .-..|.+|...+.-.=. .++..+.
T Consensus 229 vgNt~~lh~S--------a----l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g 295 (459)
T KOG4340|consen 229 VGNTLVLHQS--------A----LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEG 295 (459)
T ss_pred ccchHHHHHH--------H----HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcccc
Confidence 0000 00000 0 0012222233344567777777666666422 23345566544432111 1223333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
.+-+.-+...+. -...||.-++-.||++.-++-|-+++.+
T Consensus 296 ~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 296 FEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 333333333332 2456677777777777777777776665
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0088 Score=57.94 Aligned_cols=232 Identities=13% Similarity=0.018 Sum_probs=122.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~ 326 (502)
|+.-.|..-|+......-.++.- |--+-.+|... .+.++.+..|+.-.+..- -|+.+|. .--.++.- +++++|..
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~-~~~~~~~~~F~~A~~ldp-~n~dvYy-HRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADE-NQSEKMWKDFNKAEDLDP-ENPDVYY-HRGQMRFLLQQYEEAIA 415 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhh-hccHHHHHHHHHHHhcCC-CCCchhH-hHHHHHHHHHHHHHHHH
Confidence 55555555555554432222221 44444555555 566666666655533321 1233332 23344333 56666666
Q ss_pred HHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 327 LSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 327 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
-|++.+.. .+.+++.|--+--+..+.+++++++..|++.++. +.--...|+-.-..+...++++.|.+.++...+..
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 66554432 3334455555555556677777777777776653 33345566666677777777777777776554433
Q ss_pred CC-----CCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 407 SL-----CKKKTLSW--LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 407 ~~-----p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
-. .+..++-. ++..- =.+++..|.+++.+..+..-+ ....|.+|-.--.. .|++++|+++|++-..-
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ----~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQ----RGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 21 11111111 11111 126777777777776554321 22345555555555 57888888888766443
Q ss_pred CCchhHHHHHHHh
Q 010739 480 SLIGPCLVYLYIK 492 (502)
Q Consensus 480 ~~~~~~li~~y~~ 492 (502)
-....-++++|+=
T Consensus 567 Art~~E~~~a~s~ 579 (606)
T KOG0547|consen 567 ARTESEMVHAYSL 579 (606)
T ss_pred HHhHHHHHHHHHH
Confidence 3234455555543
No 74
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.14 E-value=2.6e-06 Score=50.20 Aligned_cols=31 Identities=29% Similarity=0.204 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGK 372 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 372 (502)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 75
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.14 E-value=2.5e-06 Score=50.28 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 010739 192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGI 222 (502)
Q Consensus 192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~ 222 (502)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999884
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.13 E-value=0.00048 Score=64.63 Aligned_cols=239 Identities=14% Similarity=0.059 Sum_probs=141.2
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS- 318 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~- 318 (502)
+...++..|+++.++ .+..... .|.......+...+ +...+-+.++.-+++....+..++..++....-..+..
T Consensus 41 ~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~-~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 41 QYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYL-SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHH-CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHH-hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 455556668776554 3333333 66665554443333 33245566655555543333332233332122223666
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChhH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAIC----ASQNEGSA 394 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~----~~~~~~~~ 394 (502)
|++++|++++.. . .+.......+..|.+.++++.|.+.++.|.+. ..|.... .+..++ ...+.+.+
T Consensus 116 ~~~~~AL~~l~~-----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~-qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 116 GDYEEALKLLHK-----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILT-QLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp CHHHHHHCCCTT-----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHH-HHHHHHHHHHHTTTCCCH
T ss_pred CCHHHHHHHHHc-----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH-HHHHHHHHHHhCchhHHH
Confidence 999999997742 1 34457778899999999999999999999854 4454433 333322 22346899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHh
Q 010739 395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCK 474 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~ 474 (502)
|..+|+++... ..++..+.+.+..++...|++++|.+++++..+..- -|..|...++-.... .+...+.+.+.+.
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~---~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLH---LGKPTEAAERYLS 260 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHH---TT-TCHHHHHHHH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHH---hCCChhHHHHHHH
Confidence 99999998654 467889999999999999999999999999776542 233444444444433 1334467777888
Q ss_pred hhhhcCCchhHHHHHHHhhcchhh
Q 010739 475 RLSDTSLIGPCLVYLYIKKYKLWI 498 (502)
Q Consensus 475 ~m~~~~~~~~~li~~y~~~g~~~~ 498 (502)
++.....-.|-+.+.-.+...++.
T Consensus 261 qL~~~~p~h~~~~~~~~~~~~FD~ 284 (290)
T PF04733_consen 261 QLKQSNPNHPLVKDLAEKEAEFDR 284 (290)
T ss_dssp HCHHHTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHH
Confidence 887665234444444444444443
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.12 E-value=0.0032 Score=55.02 Aligned_cols=194 Identities=14% Similarity=0.020 Sum_probs=128.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH
Q 010739 272 YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM 350 (502)
Q Consensus 272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 350 (502)
..-+--+|... |+...|..-+++-++. +|+..-....+-..|.+ |..+.|.+-|++........-| +.|..-.-
T Consensus 38 rlqLal~YL~~-gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd--VLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQ-GDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD--VLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--hhhhhhHH
Confidence 34455566677 6788887777666433 45444433244445777 8888888888777766555545 77777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010739 351 YICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIND 429 (502)
Q Consensus 351 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 429 (502)
+|..|++++|...|++..+.---| -..||..+--+..+.|+.+.|.+.++.-....-. ...+.-.+.+...+.|+.-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 888888888888888877653222 2346666666667788888888888776655421 34455557777788888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 430 AAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 430 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
|...+++....|. ++.......|.--.. .|+.+.+.+.=..+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~----~gd~~~a~~Y~~qL 233 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKR----LGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHH----hccHHHHHHHHHHH
Confidence 8888888766655 777666655555444 67777666654444
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0042 Score=65.05 Aligned_cols=329 Identities=13% Similarity=0.079 Sum_probs=196.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHH---HHHH------Hhh--
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVD---LLVD------MDC-- 184 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~---~~~~------m~~-- 184 (502)
.+.++.-.-|.++. +.-+.+++.....|..|+.+||++.+.+.. .+++.+..++ .++. -.+
T Consensus 841 ~deLv~EvEkRNRL-klLlp~LE~~i~eG~~d~a~hnAlaKIyID-------SNNnPE~fLkeN~yYDs~vVGkYCEKRD 912 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRL-KLLLPWLESLIQEGSQDPATHNALAKIYID-------SNNNPERFLKENPYYDSKVVGKYCEKRD 912 (1666)
T ss_pred hHHHHHHHHhhhhH-HHHHHHHHHHHhccCcchHHHhhhhheeec-------CCCChHHhcccCCcchhhHHhhhhcccC
Confidence 45566667777788 788888888889998899999999987762 2222222221 0000 000
Q ss_pred ---------CCC--------CCCHHHHHHHHHHHHhcCcHHHHH-----------HHHHHHHHcCCCCCCccccccCCCC
Q 010739 185 ---------VGL--------KPGFSMIEKVISLYWEMEKKERAV-----------LFVKAVLSRGIAYAEGDGEGQQGGP 236 (502)
Q Consensus 185 ---------~g~--------~p~~~~y~~li~~~~~~g~~~~A~-----------~l~~~m~~~~~~p~~~ty~~~~~~~ 236 (502)
+|- .-.-..|-..-+-+.+..|.+-=. ++.++..+.++.-+ .....
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~------~dPe~ 986 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPET------QDPEE 986 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCcc------CChHH
Confidence 110 000122333333344444433222 23344444433211 22233
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHH
Q 010739 237 TGYLAWKMMVEGKYVDAIKLVIHLRES--GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIE 314 (502)
Q Consensus 237 ~~~~~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~ 314 (502)
.++.+.+++-++-+.+-+++++...-. -+.-+...-|.+|-...|. +..+..+.++++..... |+.. .
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika--d~trVm~YI~rLdnyDa-~~ia-------~ 1056 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA--DRTRVMEYINRLDNYDA-PDIA-------E 1056 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc--ChHHHHHHHHHhccCCc-hhHH-------H
Confidence 445677888889999999999887643 2223334456677777777 56777777666633221 2211 1
Q ss_pred HHhc-CcHHhHHHHHHH--------------------HHH--cCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 010739 315 KYQS-DLLADGSRLSSW--------------------AIQ--EGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG 371 (502)
Q Consensus 315 ~~~~-g~~~~a~~~~~~--------------------m~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 371 (502)
.+.. +-+++|..+|++ ..+ ..+..+ ..|..+-.+-.+.|.+.+|.+-|-+.
T Consensus 1057 iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 1112 333344443311 111 112233 38888888888889888888776543
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010739 372 KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVA 451 (502)
Q Consensus 372 ~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 451 (502)
-|...|.-+++.+.+.|.+++..+.+...++....|.+. +.||-+|++.+++.+-.+++. -||......
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQ 1199 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHH
Confidence 377889999999999999999999988887777676655 479999999999988776654 367666666
Q ss_pred HHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHH
Q 010739 452 VLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYL 489 (502)
Q Consensus 452 ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~ 489 (502)
+=+-|.. .+..+.|.-++.....-..+...||+.
T Consensus 1200 vGdrcf~----~~~y~aAkl~y~~vSN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1200 VGDRCFE----EKMYEAAKLLYSNVSNFAKLASTLVYL 1233 (1666)
T ss_pred HhHHHhh----hhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666665 566666666665554433344455543
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.10 E-value=0.0012 Score=66.62 Aligned_cols=188 Identities=18% Similarity=0.090 Sum_probs=113.4
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739 275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC 353 (502)
Q Consensus 275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 353 (502)
.|.+...+ +.+.+|+.+++...+..... --|. .+-+-|+. |+++.|+++|.+ .+ .++-.|..|.+
T Consensus 738 aieaai~a-kew~kai~ildniqdqk~~s--~yy~-~iadhyan~~dfe~ae~lf~e--------~~--~~~dai~my~k 803 (1636)
T KOG3616|consen 738 AIEAAIGA-KEWKKAISILDNIQDQKTAS--GYYG-EIADHYANKGDFEIAEELFTE--------AD--LFKDAIDMYGK 803 (1636)
T ss_pred HHHHHhhh-hhhhhhHhHHHHhhhhcccc--ccch-HHHHHhccchhHHHHHHHHHh--------cc--hhHHHHHHHhc
Confidence 34445555 78889988888775543321 1232 46666888 999999998843 12 67778889999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010739 354 AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAET 433 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 433 (502)
+|++++|+++-++.. |-+.....|.+-..-.-..|++.+|.+++-.+. .|+. -|..|-+.|..++.+++
T Consensus 804 ~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHH
Confidence 999999998876643 555556666666666777788877777663322 2332 36667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhh
Q 010739 434 LTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWI 498 (502)
Q Consensus 434 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~ 498 (502)
.++--...+. .|...+ .+.++..|++.+|..-|-+.. -..+-|+||-.+|-++.
T Consensus 873 v~k~h~d~l~---dt~~~f----~~e~e~~g~lkaae~~flea~----d~kaavnmyk~s~lw~d 926 (1636)
T KOG3616|consen 873 VEKHHGDHLH---DTHKHF----AKELEAEGDLKAAEEHFLEAG----DFKAAVNMYKASELWED 926 (1636)
T ss_pred HHHhChhhhh---HHHHHH----HHHHHhccChhHHHHHHHhhh----hHHHHHHHhhhhhhHHH
Confidence 6652111111 111111 223333566666666543222 24556666666554443
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.09 E-value=0.00012 Score=68.78 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=145.7
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH-HH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM-MV 246 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~-~~ 246 (502)
-.|++..++.-.+ .....-..+....--+.++|...|+.+.+. .++.... .|.. ..+-.++- +.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l----------~av~~la~y~~ 77 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPEL----------QAVRLLAEYLS 77 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCC----------HHHHHHHHHHC
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhH----------HHHHHHHHHHh
Confidence 3577777775444 222222223455566778888889877543 4443332 3332 11122222 22
Q ss_pred h-CcHHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739 247 E-GKYVDAIKLVIHLRESGLKPEVYSYL-IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 247 ~-g~~~~a~~~~~~m~~~g~~p~~~ty~-~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~ 323 (502)
. ++-+.++.-+++....+..++..++. ..-..+... |++++|+++++.- .+..... ..|..|.+ ++.+.
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~-~~~~~AL~~l~~~------~~lE~~a-l~Vqi~L~~~R~dl 149 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHE-GDYEEALKLLHKG------GSLELLA-LAVQILLKMNRPDL 149 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC-CHHHHHHCCCTTT------TCHHHHH-HHHHHHHHTT-HHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc-CCHHHHHHHHHcc------CcccHHH-HHHHHHHHcCCHHH
Confidence 2 34455554444433333332222322 222334445 7999998877652 2233322 46777888 99999
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL 399 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~ 399 (502)
|.+.++.|.+.. ..+ +-..+..++.. .+.+.+|+.+|+++.+ ...++..+.|.+..+....|++++|.+++
T Consensus 150 A~k~l~~~~~~~--eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 150 AEKELKNMQQID--EDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp HHHHHHHHHCCS--CCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHhcC--CcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999987653 323 44445555554 3469999999999865 46788899999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 010739 400 SRIEVMNSLCKKKTLSWLLRGYIKGGHI-NDAAETLTKMLDL 440 (502)
Q Consensus 400 ~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~ 440 (502)
++....+ .-+..+..-+|......|+. +.+.+++.+++..
T Consensus 225 ~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 225 EEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8865544 23566666688888888887 7788888888764
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.08 E-value=0.0048 Score=60.30 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=101.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 010739 122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG-FSMIEKVISL 200 (502)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~ 200 (502)
.+...|+. +.|.+.++...+....|...+.. ...+.. ... ..+..+.+.+.++. .....|+ ......+-..
T Consensus 52 ~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~-~~~---~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 52 SAWIAGDL-PKALALLEQLLDDYPRDLLALKL-HLGAFG-LGD---FSGMRDHVARVLPL--WAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHH-hHHHHH-hcc---cccCchhHHHHHhc--cCcCCCCcHHHHHHHHHH
Confidence 44566888 89999999988776335544442 111110 000 34556666666654 2223333 3455566678
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC-CCCH--hHHHHHH
Q 010739 201 YWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL-KPEV--YSYLIAL 276 (502)
Q Consensus 201 ~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~ty~~li 276 (502)
+...|++++|.+.+++..+.. |+.. .+.. +...+...|++++|...+++.....- .|+. ..|..+.
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~--------la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELN--PDDAWAVHA--------VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhC--CCCcHHHHH--------HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 889999999999999998765 4421 2222 44455567999999999998776521 2333 2345677
Q ss_pred HHHHhccccHHHHHHHHHHHH
Q 010739 277 TAVVKELNEFGKALRKLKGYV 297 (502)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~m~ 297 (502)
..+... |+.++|...+++..
T Consensus 194 ~~~~~~-G~~~~A~~~~~~~~ 213 (355)
T cd05804 194 LFYLER-GDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHC-CCHHHHHHHHHHHh
Confidence 777788 89999999999874
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.08 E-value=0.0036 Score=59.40 Aligned_cols=223 Identities=9% Similarity=-0.068 Sum_probs=131.2
Q ss_pred CcHHHHHHHHHHHHHc-CCCCCH--hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHH
Q 010739 248 GKYVDAIKLVIHLRES-GLKPEV--YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLA 322 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~-g~~p~~--~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~ 322 (502)
+..+.++.-+.++... ...|+. ..|...-..+.+. |+.++|...|++..+. .|+ ...|+ .+-..|.. |+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~Al~l--~P~~~~a~~-~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL-GLRALARNDFSQALAL--RPDMADAYN-YLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHc--CCCCHHHHH-HHHHHHHHCCCHH
Confidence 5667777777777754 233332 4455566667777 7888888888777553 343 34443 45566777 8999
Q ss_pred hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
+|...|++..+.... +...|..+...+...|++++|.+.|++..+. .|+..........+...++.++|.+.++..
T Consensus 116 ~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 116 AAYEAFDSVLELDPT--YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 998888887765433 3347777888888888999998888887753 454332222222334456788888888554
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---C--CC-CHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 403 EVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG---L--YP-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~--~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
.... .|+ .|.+- ......|+.+++ +.++.+.+.. . .| ....|..+-..+.+ .|+.++|+..|+..
T Consensus 192 ~~~~-~~~--~~~~~-~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~----~g~~~~A~~~~~~A 262 (296)
T PRK11189 192 YEKL-DKE--QWGWN-IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLS----LGDLDEAAALFKLA 262 (296)
T ss_pred HhhC-Ccc--ccHHH-HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 3222 222 22222 222334555443 3444444321 1 11 12345555555555 78888888888887
Q ss_pred hhcCCchhHHHH
Q 010739 477 SDTSLIGPCLVY 488 (502)
Q Consensus 477 ~~~~~~~~~li~ 488 (502)
.... +++.+-+
T Consensus 263 l~~~-~~~~~e~ 273 (296)
T PRK11189 263 LANN-VYNFVEH 273 (296)
T ss_pred HHhC-CchHHHH
Confidence 6655 4343333
No 83
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.013 Score=57.73 Aligned_cols=270 Identities=12% Similarity=0.029 Sum_probs=196.2
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
...++.+...++++..+. .+++...+-.=|.++...|+..+-..+=.+|.+.- +-...+|-. +-.-+..-
T Consensus 256 ~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a--------Vg~YYl~i 325 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA--------VGCYYLMI 325 (611)
T ss_pred HcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh--------HHHHHHHh
Confidence 788999999999987765 45566677778889999999888777777776654 222233333 33334445
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH-Hhc-CcHHhH
Q 010739 248 GKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-YQS-DLLADG 324 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-~~~-g~~~~a 324 (502)
|+..+|.+.|.+-.. +.|. ...|-.+-+.|+-. ++.|.|+..+..--+ +.|..+--. .-+.+ |.+ +..+-|
T Consensus 326 ~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAar--l~~G~hlP~-LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 326 GKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAAR--LMPGCHLPS-LYLGMEYMRTNNLKLA 399 (611)
T ss_pred cCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhc-chHHHHHHHHHHHHH--hccCCcchH-HHHHHHHHHhccHHHH
Confidence 999999999987553 3333 24566677788888 788888876655421 222222211 23333 888 999999
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GK---E-ADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~-p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
.+.|..... +.|.|+...+-+--...+.+.+.+|..+|+.-.+. .+ . --..+++.|=.+|.+.+..++|...
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999976443 44556678888877777889999999999887632 11 1 1344567777899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (502)
++...... .-|..++..+--.|...|+++.|.+.|.+-+ .+.||-.+-..++.-+..
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 98887765 3488899999889999999999999999854 788999888888887753
No 84
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.04 E-value=3.8e-05 Score=58.88 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CCCCccccccCCCCchHHHHHHHH--------hCcHHHHHHHHHHHHHc
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRGI-AYAEGDGEGQQGGPTGYLAWKMMV--------EGKYVDAIKLVIHLRES 263 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~ty~~~~~~~~~~~~~~~~~--------~g~~~~a~~~~~~m~~~ 263 (502)
|-...|.-+...+++.....+|+.+++.|+ .|++.+|+. ++...++ .+++-+.+.+|+.|...
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~--------VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~ 98 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNK--------VLKSIAKRELDSEDIENKLTNLLTVYQDILSN 98 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHH--------HHHHHHHccccchhHHHHHHHHHHHHHHHHHh
Confidence 444566666666888888888888888888 788888888 6666665 24677888999999999
Q ss_pred CCCCCHhHHHHHHHHHHhc
Q 010739 264 GLKPEVYSYLIALTAVVKE 282 (502)
Q Consensus 264 g~~p~~~ty~~li~~~~~~ 282 (502)
+++|+..||+.++..+.+.
T Consensus 99 ~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 99 KLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred ccCCcHHHHHHHHHHHHHh
Confidence 9999999999999998775
No 85
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=7.1e-05 Score=72.95 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=91.8
Q ss_pred hHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010739 340 YGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWL 417 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~l 417 (502)
+.+....+++.+....+++++..++.+.+.. ....-..|..++|..|...|..+.+..++..-..+|+-||..|||.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3456666777777777788888888877765 33334456678888888888888888888888888888888888888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739 418 LRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 418 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (502)
|+.+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 88888888888888888888888777777888877777754
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.98 E-value=0.0023 Score=55.96 Aligned_cols=189 Identities=12% Similarity=0.006 Sum_probs=135.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
.-.+--+|.+.|+. ..|..-+++..+..+-+..+|..+...+- +.|..+.|.+.|+...+..- -+-.+.|
T Consensus 38 rlqLal~YL~~gd~-~~A~~nlekAL~~DPs~~~a~~~~A~~Yq--------~~Ge~~~A~e~YrkAlsl~p-~~GdVLN 107 (250)
T COG3063 38 RLQLALGYLQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQ--------KLGENDLADESYRKALSLAP-NNGDVLN 107 (250)
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHH--------HcCChhhHHHHHHHHHhcCC-Cccchhh
Confidence 44555677888889 79999999998888446668888877676 88999999999988776422 2556788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC-CCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHH
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRG-IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYSYL 273 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~ 273 (502)
..-..+|..|++++|...|++....- ..--..||.. +-+..++.|+.+.|.+.|++-.+. .|+ ..+..
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN--------~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l 177 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLEN--------LGLCALKAGQFDQAEEYLKRALEL--DPQFPPALL 177 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhh--------hHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHH
Confidence 88888899999999999998877553 2222345555 677788889999999999887765 232 35566
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHH
Q 010739 274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRL 327 (502)
Q Consensus 274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~ 327 (502)
.+.....+. ++...|...++.....+- ++..+.. .-|..-.. |+.+.+.+.
T Consensus 178 ~~a~~~~~~-~~y~~Ar~~~~~~~~~~~-~~A~sL~-L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 178 ELARLHYKA-GDYAPARLYLERYQQRGG-AQAESLL-LGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHhc-ccchHHHHHHHHHHhccc-ccHHHHH-HHHHHHHHhccHHHHHHH
Confidence 677778888 788888888877755554 6666543 23444444 777666654
No 87
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00015 Score=55.66 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=46.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 386 CASQNEGSAVSRLLSRIEVMNS-LCKKKTLSWLLRGYIKG--------GHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 386 ~~~~~~~~~a~~l~~~m~~~~~-~p~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
|...+++.....+++.++..|+ .|+..+|+.++.+.++. +++-+.+.+|+.|+..+++|+..||+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444444444444444 44444444444444432 23446788999999999999999999999998
Q ss_pred Hc
Q 010739 457 RK 458 (502)
Q Consensus 457 ~~ 458 (502)
.+
T Consensus 115 lk 116 (120)
T PF08579_consen 115 LK 116 (120)
T ss_pred HH
Confidence 75
No 88
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0012 Score=63.71 Aligned_cols=217 Identities=12% Similarity=0.046 Sum_probs=133.3
Q ss_pred CCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 010739 127 GRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK 206 (502)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 206 (502)
|+. ..|.+-|+...+....+...|--+-..+. ...+-++....|.+..+.+-. |..+|..--..+.-.++
T Consensus 340 g~~-~~a~~d~~~~I~l~~~~~~lyI~~a~~y~--------d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 340 GDS-LGAQEDFDAAIKLDPAFNSLYIKRAAAYA--------DENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred CCc-hhhhhhHHHHHhcCcccchHHHHHHHHHh--------hhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence 555 57777788777766222222444444445 667777777878777665432 44556555556666677
Q ss_pred HHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcccc
Q 010739 207 KERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNE 285 (502)
Q Consensus 207 ~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~ 285 (502)
+++|..=|++-.+.+ |. +..|-. +.+...+.++++++...|++-+.+ ++--+..||-.-..+... ++
T Consensus 410 ~e~A~aDF~Kai~L~--pe~~~~~iQ--------l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDq-qq 477 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD--PENAYAYIQ--------LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQ-QQ 477 (606)
T ss_pred HHHHHHHHHHHhhcC--hhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhH-Hh
Confidence 788888777766543 32 122222 555566678888888888887766 444567778888888888 78
Q ss_pred HHHHHHHHHHHHHcC-----CCCchh--chHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChH
Q 010739 286 FGKALRKLKGYVRAG-----SIAELD--GKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGL 358 (502)
Q Consensus 286 ~~~a~~~~~~m~~~g-----~~p~~~--~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (502)
+++|.+.++.-++.. +..+.. +.. +++-.=-++++..|.+++++..+.... ....|-+|-..-.+.|+.+
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~K-a~l~~qwk~d~~~a~~Ll~KA~e~Dpk--ce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHK-ALLVLQWKEDINQAENLLRKAIELDPK--CEQAYETLAQFELQRGKID 554 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhh-hHhhhchhhhHHHHHHHHHHHHccCch--HHHHHHHHHHHHHHHhhHH
Confidence 888888777653321 111111 111 122111227778888877765554322 2357777777777888888
Q ss_pred HHHHHHHHHH
Q 010739 359 EAERQLWEMK 368 (502)
Q Consensus 359 ~A~~l~~~m~ 368 (502)
+|+++|++-.
T Consensus 555 eAielFEksa 564 (606)
T KOG0547|consen 555 EAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHH
Confidence 8888887643
No 89
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.91 E-value=0.0003 Score=61.04 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=90.3
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 010739 145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAY 224 (502)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 224 (502)
..|..+|..+|+.+...-.. +.|.++=....+..|.+.|+.-|..+|+.||+.+=+ |.+- -..+|+.+=-+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~---RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h---- 114 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVR---RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH---- 114 (228)
T ss_pred cccHHHHHHHHHHHHhcCCC---CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc----
Confidence 35788899999988754221 678999999999999999999999999999999865 4433 22222222110
Q ss_pred CCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739 225 AEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY 296 (502)
Q Consensus 225 ~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m 296 (502)
--.+-+-|++++++|+..|+-||..|+..+++.|++.+--+.+..++.--|
T Consensus 115 ---------------------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 115 ---------------------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred ---------------------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 014567889999999999999999999999999999843344555544444
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=0.0011 Score=67.11 Aligned_cols=237 Identities=12% Similarity=0.081 Sum_probs=183.2
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC
Q 010739 187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK 266 (502)
Q Consensus 187 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~ 266 (502)
++|--..--.+...+...|-...|..+|+.+..-. -++..++..|+..+|..+..+-.+ -+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw~-----------------~vi~CY~~lg~~~kaeei~~q~le--k~ 454 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMWD-----------------PVILCYLLLGQHGKAEEINRQELE--KD 454 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHH-----------------HHHHHHHHhcccchHHHHHHHHhc--CC
Confidence 44544555667788899999999999999875322 278888889999999998888776 47
Q ss_pred CCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHH-HhcCcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739 267 PEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEK-YQSDLLADGSRLSSWAIQEGGSSLYGVVH 344 (502)
Q Consensus 267 p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (502)
||..-|..+.+..... .=+++|+++.+.- .+... ++-.. |.+++++++.+.|+.......-... +|
T Consensus 455 ~d~~lyc~LGDv~~d~-s~yEkawElsn~~sarA~r---------~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~w 522 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDP-SLYEKAWELSNYISARAQR---------SLALLILSNKDFSEADKHLERSLEINPLQLG--TW 522 (777)
T ss_pred CcchhHHHhhhhccCh-HHHHHHHHHhhhhhHHHHH---------hhccccccchhHHHHHHHHHHHhhcCccchh--HH
Confidence 8999999999888887 5689999988765 33111 11111 2237999999999887776655555 89
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739 345 ERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK 423 (502)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 423 (502)
-..-.+..+.++++.|.+.|..-.. ..|| ...||.+-.++.+.++-.+|...+.+..+++ .-+...|.-.+....+
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVD 599 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhh
Confidence 8888888899999999999998763 5665 4679999999999999999999999998888 4466667667888899
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 010739 424 GGHINDAAETLTKMLDLG-LYPEYMDRVAVLQGLR 457 (502)
Q Consensus 424 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~ 457 (502)
.|.+++|++.+.+|.+.. -.-|......++....
T Consensus 600 vge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred cccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999999987643 1236666666666654
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.88 E-value=0.0077 Score=65.28 Aligned_cols=236 Identities=11% Similarity=-0.022 Sum_probs=159.7
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCcHHHH
Q 010739 136 VFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP-----GFSMIEKVISLYWEMEKKERA 210 (502)
Q Consensus 136 ~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~y~~li~~~~~~g~~~~A 210 (502)
=|+.......-+...|-..+.-.. +.+.+++|.++.++.... +.+ -...|.++++.-.-.|.-+..
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~L--------elsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHL--------ELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHh--------hhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 344444443224456666556455 788999999999887654 211 124688888888888888999
Q ss_pred HHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHH
Q 010739 211 VLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKAL 290 (502)
Q Consensus 211 ~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~ 290 (502)
.++|++..+.--... .|.. +.--+-+.++.++|.++|+.|.++ +.-....|...+..+.+. ++-+.|.
T Consensus 1517 ~kVFeRAcqycd~~~--V~~~--------L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~-ne~~aa~ 1584 (1710)
T KOG1070|consen 1517 KKVFERACQYCDAYT--VHLK--------LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ-NEAEAAR 1584 (1710)
T ss_pred HHHHHHHHHhcchHH--HHHH--------HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc-cHHHHHH
Confidence 999998876541111 1111 444455578999999999999887 445667888888899888 7778888
Q ss_pred HHHHHHHHcCCCCchh-chHHHHHHH-HhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 291 RKLKGYVRAGSIAELD-GKNLGLIEK-YQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 291 ~~~~~m~~~g~~p~~~-~~~~~li~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
.++.+-.+.--....+ ... ....+ |..|+-+.+..+|+..........| .|+..|..=.+.|+.+.+..+|++..
T Consensus 1585 ~lL~rAL~~lPk~eHv~~Is-kfAqLEFk~GDaeRGRtlfEgll~ayPKRtD--lW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFIS-KFAQLEFKYGDAERGRTLFEGLLSAYPKRTD--LWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHH-HHHHHHhhcCCchhhHHHHHHHHhhCccchh--HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8877664331111111 111 12222 4449999999999988888777777 99999999999999999999999999
Q ss_pred HCCCCCCH--HHHHHHHHHHHhcCChhHH
Q 010739 369 LVGKEADG--DLYDIVLAICASQNEGSAV 395 (502)
Q Consensus 369 ~~g~~p~~--~t~~~li~~~~~~~~~~~a 395 (502)
..++.|-- ..|.--+..=...|+-..+
T Consensus 1662 ~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1662 ELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 88887642 3445555544444544433
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.86 E-value=0.041 Score=55.33 Aligned_cols=337 Identities=12% Similarity=0.044 Sum_probs=176.8
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 116 LQLVLVYFSQE-GRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 116 ~~~ll~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
+..++..+.|. ..+ ++|+..|....+.++-|...|.-+--.-. +.|+++.....-.+..+. .+-....|
T Consensus 77 CwHv~gl~~R~dK~Y-~eaiKcy~nAl~~~~dN~qilrDlslLQ~--------QmRd~~~~~~tr~~LLql-~~~~ra~w 146 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKY-DEAIKCYRNALKIEKDNLQILRDLSLLQI--------QMRDYEGYLETRNQLLQL-RPSQRASW 146 (700)
T ss_pred hHHHHHHHHhhhhhH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHh-hhhhHHHH
Confidence 33444444443 455 78888888887777556666654433222 566777666666666554 22345678
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC-CCCCCccccc------------cCCCCchH--------------HH------
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRG-IAYAEGDGEG------------QQGGPTGY--------------LA------ 241 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~ty~~------------~~~~~~~~--------------~~------ 241 (502)
..+.-++--.|+...|..++++.++.. -.|+..+|.- +.|.+... +.
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka 226 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH
Confidence 888888888899999999999887665 3455555532 11110000 00
Q ss_pred HHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hccccHHHHH-HHHHHHHHcC---CCCchhchHHHHHHHH
Q 010739 242 WKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV-KELNEFGKAL-RKLKGYVRAG---SIAELDGKNLGLIEKY 316 (502)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~-~~~~~~~~a~-~~~~~m~~~g---~~p~~~~~~~~li~~~ 316 (502)
.-.++-+++++|..++..+... .||..-|...+..+. +. .+..++. .++....+.- ..|--... .++..
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~-~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl--svl~~- 300 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKI-KDMLEALKALYAILSEKYPRHECPRRLPL--SVLNG- 300 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhcCcccccchhccH--HHhCc-
Confidence 0001125666666666666654 455555444333332 33 2333333 3333331110 00100000 00100
Q ss_pred hcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC------------CCCHHHH--H
Q 010739 317 QSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GK------------EADGDLY--D 380 (502)
Q Consensus 317 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~------------~p~~~t~--~ 380 (502)
..-.+...+++..+.+.|+|. ++..+..-|-.....+-..++.-.+... |- .|....| -
T Consensus 301 -eel~~~vdkyL~~~l~Kg~p~----vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 301 -EELKEIVDKYLRPLLSKGVPS----VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred -chhHHHHHHHHHHHhhcCCCc----hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 011222223444555566555 5555555444333222222222222211 11 3444444 3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010739 381 IVLAICASQNEGSAVSRLLSRIEVMNSLCKK-KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKR 459 (502)
Q Consensus 381 ~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 459 (502)
.++..+-+.|+++.|...++..... .|+. ..|-.=-+.+...|++++|..++++..+... ||...=.-...-..+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLr- 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLR- 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHH-
Confidence 4457788888888888888776543 3442 2343444678888899999888888766542 454433333333345
Q ss_pred ccccccHHHHHHHHhhhhhcC
Q 010739 460 IQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 460 ~~~~~~~~~a~~~~~~m~~~~ 480 (502)
++++++|.+.+..+.+.|
T Consensus 452 ---An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ---ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ---ccccHHHHHHHHHhhhcc
Confidence 788888888888776666
No 93
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.84 E-value=0.00056 Score=66.81 Aligned_cols=131 Identities=14% Similarity=0.060 Sum_probs=107.0
Q ss_pred HHHHHHHc---CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHc--CCCCchhchHHHHHHHHhc-CcHHhHHHHHH
Q 010739 256 LVIHLRES---GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRA--GSIAELDGKNLGLIEKYQS-DLLADGSRLSS 329 (502)
Q Consensus 256 ~~~~m~~~---g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~ 329 (502)
++..|.+. +...+......+++.+... .+++.+..++..+... ....-..|.. ++|+.|.+ |..+.+..++.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~h-a~vR~~l~~~~~~~~l~~L~ 127 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHH-ALVRQCLELGAEDELLELLK 127 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCH-hHHHHHHHHHHHHHcCcccccccCccHH-HHHHHHHhcCCHHHHHHHHh
Confidence 55666543 5667888889999999988 7899999999888544 2222233333 79999999 99999999999
Q ss_pred HHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 330 WAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 330 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
.-...|+-+.+ +++|.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+-
T Consensus 128 n~~~yGiF~D~-~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 128 NRLQYGIFPDN-FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhcccCCCh-hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88889977744 899999999999999999999999999998888889988888777765
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.018 Score=56.88 Aligned_cols=278 Identities=13% Similarity=-0.029 Sum_probs=172.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
...-...+-..+++ ++.+++++...+...+....+..-|.++. ..|+-.+-.-+=.+|.+. .+-...+|=
T Consensus 247 l~~~ad~~y~~c~f-~~c~kit~~lle~dpfh~~~~~~~ia~l~--------el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 247 LAEKADRLYYGCRF-KECLKITEELLEKDPFHLPCLPLHIACLY--------ELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred HHHHHHHHHHcChH-HHHHHHhHHHHhhCCCCcchHHHHHHHHH--------HhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 44444556677888 89999999998877666666766666666 566666655555555553 444667888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc--C-CCCCHhHH
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES--G-LKPEVYSY 272 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~--g-~~p~~~ty 272 (502)
++---|.-.|+.++|.+.|..-...+ | +|.. -+-..-..+...|..++|+..+..--+. | ..|.. |
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD--~---~fgp----aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y 385 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD--P---TFGP----AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y 385 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC--c---cccH----HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H
Confidence 88888888899999999998665433 1 1211 0111223333457778888777655443 2 22322 2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHH-HhcCcHHhHHHHHHHHHHcC---CCC--chHhHHH
Q 010739 273 LIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEK-YQSDLLADGSRLSSWAIQEG---GSS--LYGVVHE 345 (502)
Q Consensus 273 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~-~~~g~~~~a~~~~~~m~~~~---~~~--~~~~~~~ 345 (502)
+---|.+. +....|.+.|.+- .++-| |+.+.+ -+--. |..+.+.+|...|+.....- .+. .-..+++
T Consensus 386 --lgmey~~t-~n~kLAe~Ff~~A--~ai~P~Dplv~~-Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 386 --LGMEYMRT-NNLKLAEKFFKQA--LAIAPSDPLVLH-ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred --HHHHHHHh-ccHHHHHHHHHHH--HhcCCCcchhhh-hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 22234555 5677777766554 23334 344444 23322 44478888888887655221 111 1224677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK 423 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 423 (502)
.|-++|-+.++.++|+..++.-... ..-|..|+.++--.+...|+++.|.+.|.... .+.|+-.+-+.++..+..
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 8888888888888888888876643 23366677777777788888888888887654 345766666666665444
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.80 E-value=0.045 Score=53.91 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLS-RIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~-~m~~~~~~p~~~~~~~li~ 419 (502)
.+|...++.--+..-+..|..+|.+.++.+..+ ++..+++++..+|. ++.+-|.++|+ .++.+|-. ..-....++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHH
Confidence 467777777777888899999999999998888 88888999988886 77888888886 56666532 333344777
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 420 GYIKGGHINDAAETLTKMLDLGLYPEY--MDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 420 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
-+..-|+-..|..+|++.+..++.||. ..|..+|+-=.. -|++..+.++-+.+
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~----vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN----VGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh----cccHHHHHHHHHHH
Confidence 788889999999999999988777665 578888877665 68888888876655
No 96
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.78 E-value=0.057 Score=54.46 Aligned_cols=208 Identities=11% Similarity=0.017 Sum_probs=97.1
Q ss_pred hccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH--
Q 010739 169 ERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-- 246 (502)
Q Consensus 169 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-- 246 (502)
.|..++...+|++.... ++-....|-....-+...||...|..++.+.-+.. |+ +--+|-+..
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pn------------seeiwlaavKl 627 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PN------------SEEIWLAAVKL 627 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CC------------cHHHHHHHHHH
Confidence 44555555555554443 22233344444444555566666666665554433 11 112332222
Q ss_pred ---hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739 247 ---EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA 322 (502)
Q Consensus 247 ---~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~ 322 (502)
+.++++|..+|.+-.. ..|+...|---++.---. +..++|.+++++.++. -|+-+-..+.+-..+.+ ++++
T Consensus 628 e~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~l-d~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARS--ISGTERVWMKSANLERYL-DNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred hhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHh-hhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 3566666666665544 344444433322222222 3466666666555332 23333332222222444 5566
Q ss_pred hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739 323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL 399 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~ 399 (502)
.|.+.|..=.. .-+.....|-.+-.-=-+.|.+-+|..++++-+-.+ .-|...|-..|..-.+.|+.+.|..++
T Consensus 703 ~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 703 MAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 55554421111 111122345444444444566666666666655432 224555666666666666666655544
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.77 E-value=0.11 Score=57.84 Aligned_cols=299 Identities=10% Similarity=-0.020 Sum_probs=171.3
Q ss_pred hhccHhhHHHHHHHHhhCC--C----CCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchH
Q 010739 168 EERGVGDVVDLLVDMDCVG--L----KPGF--SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGY 239 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g--~----~p~~--~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~ 239 (502)
..++++++..++++....- . .+.. .....+-..+...|++++|...+++..+.- +....+.. ......
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~--~~a~~~ 496 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSR--IVATSV 496 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHH--HHHHHH
Confidence 5688888888887764421 0 1111 222223344568999999999999876531 11111100 000011
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCCC---chhc
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRES----GL-KPEVYSYLIALTAVVKELNEFGKALRKLKGYVR----AGSIA---ELDG 307 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~p---~~~~ 307 (502)
+...+...|++++|...+++.... |- .+-..++..+-..+... |++++|...+++... .+... ....
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 333344579999999999887653 11 11123444555566677 799999998877632 22211 1122
Q ss_pred hHHHHHHHHhc-CcHHhHHHHHHHHHHcC---CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHH---
Q 010739 308 KNLGLIEKYQS-DLLADGSRLSSWAIQEG---GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKE-ADGDLY--- 379 (502)
Q Consensus 308 ~~~~li~~~~~-g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~--- 379 (502)
+. .+-..+.. |++++|...+.+..... .+......+..+-..+...|+.++|.+.+++.....-. .....+
T Consensus 576 ~~-~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 576 LR-IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HH-HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 21 23333444 99999999988765532 12222344555666777899999999999887543111 111111
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHH
Q 010739 380 --DIVLAICASQNEGSAVSRLLSRIEVMNSLCKK---KTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPEY-MDR 449 (502)
Q Consensus 380 --~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~ 449 (502)
...+..+...|+.+.|.+.+............ ..+..+...+...|+.++|...+++.... |..++. .+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11224445578899988887665432211111 11234666788899999999999988753 333322 233
Q ss_pred HHHHHHHHccccccccHHHHHHHHhhh
Q 010739 450 VAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 450 ~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
..+-.++.. .|+.++|...+.+.
T Consensus 735 ~~la~a~~~----~G~~~~A~~~L~~A 757 (903)
T PRK04841 735 ILLNQLYWQ----QGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHH
Confidence 333333344 78888888777666
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.74 E-value=0.063 Score=54.04 Aligned_cols=301 Identities=16% Similarity=0.070 Sum_probs=184.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
|-.+..+.--.|.. ..|.++.++..+.. .|+...|.-....+- ...-.. +.|..+.|.+-+..-... +.-....
T Consensus 146 w~~~Avs~~L~g~y-~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly-~n~i~~-E~g~~q~ale~L~~~e~~-i~Dkla~ 221 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEY-KMALEILEEFEKTQNTSPSKEDYEHSELLLY-QNQILI-EAGSLQKALEHLLDNEKQ-IVDKLAF 221 (700)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HHHHHH-HcccHHHHHHHHHhhhhH-HHHHHHH
Confidence 66677777777888 79999999998765 577777765554222 111122 577788888876654332 2222333
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH--HhCcHHHHHHHHHHHHHc---CCCCC
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM--VEGKYVDAIKLVIHLRES---GLKPE 268 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~--~~g~~~~a~~~~~~m~~~---g~~p~ 268 (502)
-.+--..+.+.+++++|..++..+..++ ||-..|.. ....++ ..+..+....+|....+. .-.|-
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~--------~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYE--------GLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHH--------HHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 4455667889999999999999999887 77776655 333333 233444344666665543 22222
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHH----HcC--------
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAI----QEG-------- 335 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~----~~~-------- 335 (502)
....+ ++.+ . .-.+..-.++..+.+.|+.+-.. .+...|.. ...+-..++...+. ..+
T Consensus 292 Rlpls-vl~~---e-el~~~vdkyL~~~l~Kg~p~vf~----dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 292 RLPLS-VLNG---E-ELKEIVDKYLRPLLSKGVPSVFK----DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred hccHH-HhCc---c-hhHHHHHHHHHHHhhcCCCchhh----hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 22222 2222 1 11222223355557777654222 35555554 32222222221111 111
Q ss_pred -CCCchHhHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 010739 336 -GSSLYGVVH--ERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL-YDIVLAICASQNEGSAVSRLLSRIEVMNSLCKK 411 (502)
Q Consensus 336 -~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~ 411 (502)
..++....| -.++..|-+.|+++.|...++.... -.|+.+- |-.=-..+...|+++.|...+++..+.+ .||+
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR 439 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADR 439 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhH
Confidence 113333444 4567778889999999999998874 3565443 3333378899999999999999998877 4566
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010739 412 KTLSWLLRGYIKGGHINDAAETLTKMLDLGL 442 (502)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 442 (502)
..=+--..-..+++++++|.++.....+.|.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5544566677789999999999999988885
No 99
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.71 E-value=0.00044 Score=59.97 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=69.2
Q ss_pred hHhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 010739 340 YGVVHERLLAMYIC-----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL 414 (502)
Q Consensus 340 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~ 414 (502)
+-.+|..+|..|.+ .|.++-...-+..|.+-|+.-|..+|+.||+.+=+ |.+- ....+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNFF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccHH
Confidence 34578888888876 36677777777788888888888888888877754 2221 11112
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739 415 SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 415 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (502)
-.+..-| ..+.+-|++++++|.+.|+-||..|+..|++.+.+
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 2221112 23456789999999999999999999999999954
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.70 E-value=0.14 Score=56.93 Aligned_cols=302 Identities=11% Similarity=-0.043 Sum_probs=168.5
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC---CccccccCCCCchHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA---EGDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~ty~~~~~~~~~~~~~~~ 244 (502)
..|+++.+..+++.+.......+..........+...|++++|..++++..+.--..+ ...... .........+
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~---~~~~~~a~~~ 462 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQA---EFNALRAQVA 462 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHH---HHHHHHHHHH
Confidence 4677777777777663321112222234445556788999999999988754311100 000000 0001122333
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhccccHHHHHHHHHHHHHcC--C-CCch--hchHHHHHHH
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEV----YSYLIALTAVVKELNEFGKALRKLKGYVRAG--S-IAEL--DGKNLGLIEK 315 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g--~-~p~~--~~~~~~li~~ 315 (502)
...|++++|...+++....--..+. ...+.+-..+... |++++|...+++..... . .+.. .... .+-..
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~-~la~~ 540 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLL-QQSEI 540 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHH-HHHHH
Confidence 4579999999999987653111121 2334444455566 79999999888774321 1 1111 1111 23334
Q ss_pred Hhc-CcHHhHHHHHHHHHHc----CCC--CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 010739 316 YQS-DLLADGSRLSSWAIQE----GGS--SLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKEAD--GDLYDIVLA 384 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~li~ 384 (502)
+.. |++++|...+++.... +.. ......+..+-..+...|++++|...+.+.... ...+. ...+..+-.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 555 9999999998775543 211 112234445555667789999999999887553 11222 233333446
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHH
Q 010739 385 ICASQNEGSAVSRLLSRIEVMNSL-CKKKTL-----SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD---RVAVLQG 455 (502)
Q Consensus 385 ~~~~~~~~~~a~~l~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~ 455 (502)
.....|+.+.|.+.++........ .....+ ...+..+...|+.+.|..++.............+ +..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 777889999999988766442111 111111 1123455668999999999877554222111111 2233333
Q ss_pred HHccccccccHHHHHHHHhhhhh
Q 010739 456 LRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 456 ~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
+.. .|+.++|...++....
T Consensus 701 ~~~----~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 701 QIL----LGQFDEAEIILEELNE 719 (903)
T ss_pred HHH----cCCHHHHHHHHHHHHH
Confidence 344 6788888888777643
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.68 E-value=0.0076 Score=65.34 Aligned_cols=192 Identities=10% Similarity=0.045 Sum_probs=143.1
Q ss_pred hCcHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-Cc
Q 010739 247 EGKYVDAIKLVIHLRESGLKPE-----VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DL 320 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~-----~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~ 320 (502)
.++.++|.+++++.... +.+. ...|.++++.-.-. |.-+...++|++..+. -|+.+-...|...|.+ +.
T Consensus 1471 lsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcqy---cd~~~V~~~L~~iy~k~ek 1545 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQY---CDAYTVHLKLLGIYEKSEK 1545 (1710)
T ss_pred hhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHhhc
Confidence 48999999999988765 3222 13455555555555 5566777777776443 2333323378888999 99
Q ss_pred HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHH
Q 010739 321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD---GDLYDIVLAICASQNEGSAVSR 397 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~ 397 (502)
.++|.++++.|.+.-.... ..|...+..+.+..+-+.|..++.+..+. -|- .....-.+..-.+.|+.+++..
T Consensus 1546 ~~~A~ell~~m~KKF~q~~--~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKKFGQTR--KVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRT 1621 (1710)
T ss_pred chhHHHHHHHHHHHhcchh--hHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHH
Confidence 9999999999988755333 49999999999999999999999987753 343 2223334455567899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010739 398 LLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD 448 (502)
Q Consensus 398 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 448 (502)
+|+...... .--...|+..|+.=.++|+.+.+..+|++....++.|-..-
T Consensus 1622 lfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1622 LFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred HHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 999887654 22577999999999999999999999999999998876543
No 102
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.079 Score=52.80 Aligned_cols=368 Identities=15% Similarity=0.090 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhh
Q 010739 84 EEFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWV 162 (502)
Q Consensus 84 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~ 162 (502)
+.+++|.....++. ..|+ .++.+..=+-++.+.+++ ++|+.+.+.-.....-+... +=.+||..
T Consensus 26 ~e~e~a~k~~~Kil~~~pd----------d~~a~~cKvValIq~~ky-~~ALk~ikk~~~~~~~~~~~---fEKAYc~Y- 90 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPD----------DEDAIRCKVVALIQLDKY-EDALKLIKKNGALLVINSFF---FEKAYCEY- 90 (652)
T ss_pred hHHHHHHHHHHHHHhcCCC----------cHhhHhhhHhhhhhhhHH-HHHHHHHHhcchhhhcchhh---HHHHHHHH-
Confidence 33777776666655 2122 112244444556666677 67774443321110011111 24566632
Q ss_pred hhhhhhhccHhhHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC------------------
Q 010739 163 KKYIEEERGVGDVVDLLVDMDCVGLKPGF-SMIEKVISLYWEMEKKERAVLFVKAVLSRGIA------------------ 223 (502)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~------------------ 223 (502)
+.+..++|+..++ |..++. .+...=-..+-|.|++++|.++|+.+.+.+..
T Consensus 91 -----rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 91 -----RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred -----HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 6677777777766 333322 24444445566777777777777777554432
Q ss_pred ----------CCCccccccCCCCchHHHHHHHH---hCcHHHHHHHHHHHHHc-------------CCCCCHhHHH-HHH
Q 010739 224 ----------YAEGDGEGQQGGPTGYLAWKMMV---EGKYVDAIKLVIHLRES-------------GLKPEVYSYL-IAL 276 (502)
Q Consensus 224 ----------p~~~ty~~~~~~~~~~~~~~~~~---~g~~~~a~~~~~~m~~~-------------g~~p~~~ty~-~li 276 (502)
| ..||.. +....|+ .|++.+|+++++.-..- +++-...+.. -+-
T Consensus 161 ~~~~q~v~~v~-e~syel--------~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 161 VQLLQSVPEVP-EDSYEL--------LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHhccCCC-cchHHH--------HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 1 223433 3333333 59999999999877221 1111111111 123
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCc--hhchHHHHHHHHhcCcHH--hHHHHH------------------------
Q 010739 277 TAVVKELNEFGKALRKLKGYVRAGSIAE--LDGKNLGLIEKYQSDLLA--DGSRLS------------------------ 328 (502)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~~li~~~~~g~~~--~a~~~~------------------------ 328 (502)
-.+-.. |+.++|.+++...++....-. ..+..+-|+.+-....+. .++..+
T Consensus 232 yVlQ~~-Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQ-GQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHh-cchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444 789999998888865543211 111111233221111111 111111
Q ss_pred ----------------HHHHHcCCCCch-HhHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 329 ----------------SWAIQEGGSSLY-GVVHERLLAMYIC--AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 329 ----------------~~m~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
.+... ..|... ...+.+++....+ .....+|.+++...-+..-.-....--.++......
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a-~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSA-SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHH-hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 00000 111110 1344444444333 223455555555544321111123333444667778
Q ss_pred CChhHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH---
Q 010739 390 NEGSAVSRLLS--------RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG--LYPEYMDRVAVLQGL--- 456 (502)
Q Consensus 390 ~~~~~a~~l~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~--- 456 (502)
|+++.|.+++. .+.+.+.. ..+...+...|.+.++.+.|-.++++....- -.+.......++.-.
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 88888888877 44444433 3445566666777777776777766654321 112222333333322
Q ss_pred -HccccccccHHHHHHHHhhhhhcC-C---chhHHHHHHHhh
Q 010739 457 -RKRIQQSGNVEAYLNLCKRLSDTS-L---IGPCLVYLYIKK 493 (502)
Q Consensus 457 -~~~~~~~~~~~~a~~~~~~m~~~~-~---~~~~li~~y~~~ 493 (502)
.+ .|+.++|...++++.... - +.-.+|.+|++.
T Consensus 468 ~lr----~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 468 KLR----HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHh----cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 23 577888888887775522 1 333456666553
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0036 Score=56.64 Aligned_cols=252 Identities=16% Similarity=0.061 Sum_probs=144.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010739 122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLY 201 (502)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 201 (502)
.+-+.+.+ -.|+.|...|.... ...+-.+. +-+..+- ..+++..+..++++....| +..+.+..-...
T Consensus 87 SLY~A~i~-ADALrV~~~~~D~~----~L~~~~lq-LqaAIkY---se~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 87 SLYKACIY-ADALRVAFLLLDNP----ALHSRVLQ-LQAAIKY---SEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHhccc-HHHHHHHHHhcCCH----HHHHHHHH-HHHHHhc---ccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 44556677 57888777774432 22222222 1110110 4677777777777766432 333444444455
Q ss_pred HhcCcHHHHHHHHHHHHHcC-CCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC-------------C
Q 010739 202 WEMEKKERAVLFVKAVLSRG-IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK-------------P 267 (502)
Q Consensus 202 ~~~g~~~~A~~l~~~m~~~~-~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~-------------p 267 (502)
-+.|+.+.|.+-|+...+-+ ..|- ..||. ..+....|++..|++...++.++|++ |
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpl-lAYni---------ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPL-LAYNL---------ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCch-hHHHH---------HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 68888888888888776544 4433 23333 44555578888898888888877653 2
Q ss_pred CHh----H----HHHHHHHH-------HhccccHHHHHHHHHHH-HHcCCCCchhchH-HHHHHHHhcCcHHhHHHHHHH
Q 010739 268 EVY----S----YLIALTAV-------VKELNEFGKALRKLKGY-VRAGSIAELDGKN-LGLIEKYQSDLLADGSRLSSW 330 (502)
Q Consensus 268 ~~~----t----y~~li~~~-------~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~-~~li~~~~~g~~~~a~~~~~~ 330 (502)
|.. | -+.++.++ .+. ++.+.|.+-+-+| .+...+.|++|.. .++.++= ++..+..+-+.-
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~-~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~--~~p~~g~~KLqF 301 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQL-RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD--ARPTEGFEKLQF 301 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhc-ccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc--CCccccHHHHHH
Confidence 221 1 12233332 333 6788888888888 5666666777743 3333332 445555554444
Q ss_pred HHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010739 331 AIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKE-ADGDLYDIVLAICASQNEGSAVSRLLS 400 (502)
Q Consensus 331 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~l~~ 400 (502)
+.....-++ .||..++--||++.-++-|-+++.+=.....+ .+.+.|+.+=..-.-.-..+++.+-++
T Consensus 302 LL~~nPfP~--ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~ 370 (459)
T KOG4340|consen 302 LLQQNPFPP--ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLD 370 (459)
T ss_pred HHhcCCCCh--HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 455543333 49999999999999999999888764332221 234444433222223345566655444
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.65 E-value=0.055 Score=52.72 Aligned_cols=238 Identities=18% Similarity=0.132 Sum_probs=131.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH---HcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCCCHH
Q 010739 119 VLVYFSQEGRDSWCALEVFEWLK---KEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKPGFS 192 (502)
Q Consensus 119 ll~~~~~~~~~~~~a~~~~~~m~---~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~ 192 (502)
=|..+.+.|.....-.++|+.+. ..+ .|..+.-+. =. ...++..+...-+.|+..+ -.|+..
T Consensus 208 Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Pl--------p~~RIa~lr~ra~q~p~~~~~d~~~~~ 275 (484)
T COG4783 208 GITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTH----PL--------PEERIADLRNRAEQSPPYNKLDSPDFQ 275 (484)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcC----CC--------chhHHHHHHHHHHhCCCCCCCCCccHH
Confidence 35556667766455567777776 333 444432110 01 3456666666666665543 356666
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY 272 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 272 (502)
.+...+.+......-..+..++..-.+.+ . ...-|. ........|++++|+..++.+... .||..-|
T Consensus 276 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~-~aa~YG---------~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~ 342 (484)
T COG4783 276 LARARIRAKYEALPNQQAADLLAKRSKRG-G-LAAQYG---------RALQTYLAGQYDEALKLLQPLIAA--QPDNPYY 342 (484)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhCcc-c-hHHHHH---------HHHHHHHhcccchHHHHHHHHHHh--CCCCHHH
Confidence 77777776555444444444433332211 0 000010 223333457888888888876654 5555444
Q ss_pred HH-HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH
Q 010739 273 LI-ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM 350 (502)
Q Consensus 273 ~~-li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 350 (502)
.. ....+.+. ++..+|.+.++.+... .|+.......+-.+|.+ |+..+|.+++++........++ .|..|-.+
T Consensus 343 ~~~~~~i~~~~-nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~--~w~~LAqa 417 (484)
T COG4783 343 LELAGDILLEA-NKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQA 417 (484)
T ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch--HHHHHHHH
Confidence 44 44455556 7777777777776443 44433333345556667 7777777777665555444444 77777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 351 YICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 351 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
|...|+..+|..-..++ +...|+++.|...+...++
T Consensus 418 y~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 418 YAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 77777766666544443 3445666666666554443
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.1 Score=53.95 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhhhh
Q 010739 443 YPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 443 ~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~~ 500 (502)
.|+..+-.-++.-...-..+.|..+.|-+.|.+..++- .-+.++.|.|+.+.|+
T Consensus 1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl----~AMraLLKSGdt~KI~ 1191 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL----SAMRALLKSGDTQKIR 1191 (1416)
T ss_pred CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH----HHHHHHHhcCCcceEE
Confidence 35555555555444322233899999999987776543 3456677888877653
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.066 Score=56.57 Aligned_cols=338 Identities=16% Similarity=0.141 Sum_probs=181.3
Q ss_pred ChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC-C--CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCC
Q 010739 112 SARELQLVLVYFSQEGRDSWCALEVFEWLKKEN-R--VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLK 188 (502)
Q Consensus 112 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~--~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 188 (502)
.|...+..+.++...+.. .+-.++++++.-.. . -+...-|.+|-.+. ..+-..+.++.+++...+.
T Consensus 983 dPe~vS~tVkAfMtadLp-~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi---------kad~trVm~YI~rLdnyDa- 1051 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLP-NELIELLEKIVLDNSVFSENRNLQNLLILTAI---------KADRTRVMEYINRLDNYDA- 1051 (1666)
T ss_pred ChHHHHHHHHHHHhcCCc-HHHHHHHHHHhcCCcccccchhhhhhHHHHHh---------hcChHHHHHHHHHhccCCc-
Confidence 366688899999999999 78999998887554 1 13334444444232 2334444444444443321
Q ss_pred CCH-------HHHHHHHHHHHh--------------cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 189 PGF-------SMIEKVISLYWE--------------MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 189 p~~-------~~y~~li~~~~~--------------~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
|++ ..|.-....|-+ -+.++.|.++-+...+ ..+++-+..+-+..
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~--------------p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNE--------------PAVWSQLAKAQLQG 1117 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCC--------------hHHHHHHHHHHHhc
Confidence 221 111111112222 2233333333222211 11222244444445
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~ 326 (502)
|.+.+|++-|-+ .-|+..|.-+++...+. |.+++-.+.+.--.+..-+|...+ .||-+|++ +++.+.++
T Consensus 1118 ~~v~dAieSyik------adDps~y~eVi~~a~~~-~~~edLv~yL~MaRkk~~E~~id~---eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK------ADDPSNYLEVIDVASRT-GKYEDLVKYLLMARKKVREPYIDS---ELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred CchHHHHHHHHh------cCCcHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhcCccchH---HHHHHHHHhchHHHHHH
Confidence 777888776543 23778899999999999 899999996633377888888886 79999999 99998888
Q ss_pred HHH------------HHHHcCC------CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010739 327 LSS------------WAIQEGG------SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS 388 (502)
Q Consensus 327 ~~~------------~m~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 388 (502)
+.. +.-+.++ -..++.-|..|-..+...|+++.|.+--++. -+..||--+-.+|..
T Consensus 1188 fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1188 FIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred HhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhc
Confidence 651 0000000 0001112333333344444444444333221 244566666666655
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccccccccHH
Q 010739 389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY-PEYMDRVAVLQGLRKRIQQSGNVE 467 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~ 467 (502)
.+.+..| .|...++.....-..-+|.-|-..|.+++-..+++.-+ |++ ...-.|+-|---|.+ .+ -.+.-
T Consensus 1262 ~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk-yk-p~km~ 1332 (1666)
T KOG0985|consen 1262 KEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK-YK-PEKMM 1332 (1666)
T ss_pred hhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh-cC-HHHHH
Confidence 4444332 23333344455666779999999999999888887632 332 333444444444432 00 12233
Q ss_pred HHHHHHhhh---------hhcCCchhHHHHHHHhhcchhhh
Q 010739 468 AYLNLCKRL---------SDTSLIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 468 ~a~~~~~~m---------~~~~~~~~~li~~y~~~g~~~~~ 499 (502)
+-+++|..- .+...++.-|+-.|.+-...+.+
T Consensus 1333 EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1333 EHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 333333211 22222566677777766555543
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.57 E-value=0.019 Score=52.45 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=24.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739 419 RGYIKGGHINDAAETLTKMLDLGL-YP-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~ 477 (502)
..|.+.|+.++|...+++..+..- .| ....+..+..++.+ .|+.++|...++.+.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~----lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK----LGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 334555555555555555444321 11 22334444444444 455555555554443
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.51 E-value=0.04 Score=56.16 Aligned_cols=228 Identities=14% Similarity=0.068 Sum_probs=161.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHH
Q 010739 118 LVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKV 197 (502)
Q Consensus 118 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~l 197 (502)
.+-..+..-|-. ..|+.+|+.. ..|.-+|-+|+ ..|+-++|..+..+-.+ -+||...|..+
T Consensus 403 ~laell~slGit-ksAl~I~Erl--------emw~~vi~CY~--------~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 403 LLAELLLSLGIT-KSALVIFERL--------EMWDPVILCYL--------LLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred HHHHHHHHcchH-HHHHHHHHhH--------HHHHHHHHHHH--------HhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 344556667778 7999998877 44566677788 78888888888877666 56899999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc-CCCCCHhHHHHHH
Q 010739 198 ISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES-GLKPEVYSYLIAL 276 (502)
Q Consensus 198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li 276 (502)
.+..-..--+++|.++++....+- + - .+..-...+++++++.+.|+.-.+. .+ -..||-..=
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA-~----r----------~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G 526 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARA-Q----R----------SLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLG 526 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHH-H----H----------hhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhcc
Confidence 998888888999999998765441 0 0 0111122368999999999864443 22 234555555
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCchhc-hHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739 277 TAVVKELNEFGKALRKLKGYVRAGSIAELDG-KNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA 354 (502)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 354 (502)
.+..+. +++..|.+.|+..+. .+||... || .+-.+|.+ ++-.+|.+.+.+..+-...+.. .|-..+....+.
T Consensus 527 ~~ALql-ek~q~av~aF~rcvt--L~Pd~~eaWn-Nls~ayi~~~~k~ra~~~l~EAlKcn~~~w~--iWENymlvsvdv 600 (777)
T KOG1128|consen 527 CAALQL-EKEQAAVKAFHRCVT--LEPDNAEAWN-NLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ--IWENYMLVSVDV 600 (777)
T ss_pred HHHHHH-hhhHHHHHHHHHHhh--cCCCchhhhh-hhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe--eeechhhhhhhc
Confidence 555566 788899888877653 4676554 55 58889999 9999999999988877755544 888888889999
Q ss_pred CChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 010739 355 GRGLEAERQLWEMKLVGK-EADGDLYDIVLAICA 387 (502)
Q Consensus 355 g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~ 387 (502)
|.+++|++.+.+|..... .-|......++....
T Consensus 601 ge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred ccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999998765421 124444444444333
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.49 E-value=0.017 Score=52.74 Aligned_cols=169 Identities=10% Similarity=-0.021 Sum_probs=117.6
Q ss_pred CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCch-HhH
Q 010739 268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLY-GVV 343 (502)
Q Consensus 268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~-~~~ 343 (502)
....+-.....+.+. +++++|...+++..+.. -.|.. ..+. .+-..|.+ |++++|...++++.......+. ...
T Consensus 32 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~a~~-~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDS-GDYTEAIKYFEALESRYPFSPYAEQAQL-DLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchhHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667777788888 79999999999884432 22221 1222 35566777 9999999999998876643333 123
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHH-----------------HHHHHHHhcCChhHHHH
Q 010739 344 HERLLAMYICA--------GRGLEAERQLWEMKLVGKEADGD-LYD-----------------IVLAICASQNEGSAVSR 397 (502)
Q Consensus 344 ~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~-----------------~li~~~~~~~~~~~a~~ 397 (502)
+..+-.++.+. |+.++|.+.|++.... .|+.. .+. .+-..+.+.|+.++|..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 44444445544 7889999999998865 34432 111 22356778899999999
Q ss_pred HHHHHHHcCC-CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 398 LLSRIEVMNS-LC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 398 l~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
.++....... .| ....+..+...+.+.|+.++|...++.+...
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9987765431 23 3567888999999999999999999988654
No 110
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.49 E-value=0.0088 Score=58.30 Aligned_cols=123 Identities=23% Similarity=0.162 Sum_probs=88.8
Q ss_pred chHHHHHHHH----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHH
Q 010739 237 TGYLAWKMMV----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGL 312 (502)
Q Consensus 237 ~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l 312 (502)
.++++.+++. .++++.|+++|+++.+.. |+.. ..+...+... ++-.+|.+++++..+.. ..+..... .-
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~-~~E~~AI~ll~~aL~~~-p~d~~LL~-~Q 240 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLM-NEEVEAIRLLNEALKEN-PQDSELLN-LQ 240 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhc-CcHHHHHHHHHHHHHhC-CCCHHHHH-HH
Confidence 3455555554 589999999999999874 6544 3467777777 67889999999886331 11222211 12
Q ss_pred HHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 313 IEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 313 i~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
...+.+ ++.+.|+++.++++...... ..+|..|..+|.+.|++++|+..++.+-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 233656 99999999998888765444 3499999999999999999998888765
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.41 E-value=0.08 Score=56.84 Aligned_cols=247 Identities=11% Similarity=0.022 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH--HHhCcHHHHHHHHHHHHHcCCC
Q 010739 189 PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM--MVEGKYVDAIKLVIHLRESGLK 266 (502)
Q Consensus 189 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~~m~~~g~~ 266 (502)
.+...+-.|+..|.+.+++++|.++.++-.+. .|+...+- ...+. ...++..++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~y---------y~~G~l~~q~~~~~~~~lv---------- 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISAL---------YISGILSLSRRPLNDSNLL---------- 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehH---------HHHHHHHHhhcchhhhhhh----------
Confidence 35678889999999999999999999855444 35543221 12222 123443333333
Q ss_pred CCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739 267 PEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE 345 (502)
Q Consensus 267 p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (502)
.++..+... .++.-...+...|.+.+-... ..+ .+-.+|.+ |+.++|..+++++.+.. +.|..+.|
T Consensus 88 -------~~l~~~~~~-~~~~~ve~~~~~i~~~~~~k~-Al~--~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLN 154 (906)
T PRK14720 88 -------NLIDSFSQN-LKWAIVEHICDKILLYGENKL-ALR--TLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVK 154 (906)
T ss_pred -------hhhhhcccc-cchhHHHHHHHHHHhhhhhhH-HHH--HHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHH
Confidence 222233333 233222222223333222111 111 36666777 88888888888777766 33455777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HH--HhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLA---IC--ASQNEGSAVSRLLSRIEVM-NSLCKKKTLSWLLR 419 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~---~~--~~~~~~~~a~~l~~~m~~~-~~~p~~~~~~~li~ 419 (502)
.+-..|... ++++|..++.+....-+ +..-|+.+.. -+ +...+++.-.++.+.+... +..--..++-.+-.
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 777777777 88888877776654311 1111222221 11 1112333333333333322 33334556666778
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHH
Q 010739 420 GYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLC 473 (502)
Q Consensus 420 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~ 473 (502)
.|-..++++++..+|+..++..- -|.....-++..|.+.....-.+++++++-
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s 284 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYKEKYKDHSLLEDYLKMS 284 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHccCcchHHHHHHHh
Confidence 88889999999999999988653 366677788888865555566677777763
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.38 E-value=0.11 Score=55.01 Aligned_cols=129 Identities=7% Similarity=-0.036 Sum_probs=73.6
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEV-YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a 324 (502)
.|++++|..+++...+. .||- .....+...+.+. +++++|+..+++.... .|+.......+-..+.+ |++++|
T Consensus 99 ~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred cCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHH
Confidence 47777777777766643 5554 3444556666666 5677776666665433 45544443223333555 777777
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL 383 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 383 (502)
..+|++....+... ...+...-.++-+.|+.++|...|++..+. ..|...-|+..+
T Consensus 174 ~~~y~~~~~~~p~~--~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 174 DACFERLSRQHPEF--ENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 77777766633222 236666666666677777777777766543 223334444443
No 113
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.37 E-value=0.2 Score=50.58 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHHHhhcCChHHHHHH-------------Hh---cccC----hhhHHHHHHHHHHcCCChHHHHHHHHHH
Q 010739 81 EMSEEFFEAIEELERMTREPSDILEE-------------MN---DRLS----ARELQLVLVYFSQEGRDSWCALEVFEWL 140 (502)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~---~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m 140 (502)
.++..+++++-.+..|.+---+-++- .. ..+. .+.|...|.....++.. +.++.+++..
T Consensus 86 ~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP-ets~rvyrRY 164 (835)
T KOG2047|consen 86 SVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP-ETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh-HHHHHHHHHH
Confidence 45677888888888876211111111 00 1111 12266667777777777 6777777766
Q ss_pred HHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC-----CCCH-HHHHHHHHHHHhcCcHH---HHH
Q 010739 141 KKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL-----KPGF-SMIEKVISLYWEMEKKE---RAV 211 (502)
Q Consensus 141 ~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~-~~y~~li~~~~~~g~~~---~A~ 211 (502)
.+-. +..-+-.|..++ ..+++++|.+.+........ .++. ..|+-+-+..++.-+.- .+.
T Consensus 165 Lk~~---P~~~eeyie~L~--------~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd 233 (835)
T KOG2047|consen 165 LKVA---PEAREEYIEYLA--------KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD 233 (835)
T ss_pred HhcC---HHHHHHHHHHHH--------hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH
Confidence 6554 222444455555 67777777777766554321 1111 12233333333322211 112
Q ss_pred HHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 010739 212 LFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVK 281 (502)
Q Consensus 212 ~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~ 281 (502)
.++..+.. -|+.+-|..+..+..-+.+.|++++|.++|++-...- .+..-|+.+.++|+.
T Consensus 234 aiiR~gi~--------rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 234 AIIRGGIR--------RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHhhcc--------cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 22222211 1111223333334555556799999999998866542 233344445555443
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.32 E-value=0.012 Score=48.39 Aligned_cols=111 Identities=11% Similarity=0.000 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
.....+...+.+.|++++|.+.|+.....+ ..+...+..+-..+...|++++|...++.....+ ..+...+..+-..|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 355566677777888888888888876643 2245566666677778888888888887766554 33566777777788
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 422 IKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
...|+.++|...|++..+. .|+...+..+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYSELKERA 128 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHHHHHHHH
Confidence 8889999999988887764 36655554444433
No 115
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.28 E-value=0.046 Score=55.66 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=114.2
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
..+.|.+|+.+++.+...... ..-|.-+-+.|+..|+++.|+++|-+- +..-| .+.-+.++
T Consensus 744 ~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---~~~~d--------------ai~my~k~ 804 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---DLFKD--------------AIDMYGKA 804 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---chhHH--------------HHHHHhcc
Confidence 467778888887776655432 234777778888888888888888643 22222 56667778
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~ 326 (502)
|+|+.|.++-.+.. |-......|-+--.-+-+. |++.+|.+++-.. | .|+ .-|.+|.+ |..++..+
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldeh-gkf~eaeqlyiti---~-~p~------~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEH-GKFAEAEQLYITI---G-EPD------KAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhh-cchhhhhheeEEc---c-Cch------HHHHHHHhhCcchHHHH
Confidence 88888888765443 4444455555555555555 6677776654221 1 121 46777888 88888888
Q ss_pred HHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739 327 LSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL 399 (502)
Q Consensus 327 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~ 399 (502)
+.++-.-+-+. + |...+-.-|-..|++..|+.-|-+.. -|.+.+..|..++.+++|.++-
T Consensus 872 lv~k~h~d~l~--d--t~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 872 LVEKHHGDHLH--D--THKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHhChhhhh--H--HHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 76542211111 2 55555666666777777777665433 3455555666666666665543
No 116
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.22 Score=48.55 Aligned_cols=335 Identities=12% Similarity=-0.029 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCC---CCH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLK---PGF 191 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~---p~~ 191 (502)
.|+..|..=.+.+.. +.|.++++...-.. |++.+|--..+ +- .+.|++..|..+++...+. +. -+.
T Consensus 176 aW~sfI~fElRykei-eraR~IYerfV~~H-P~v~~wikyar-FE-------~k~g~~~~aR~VyerAie~-~~~d~~~e 244 (677)
T KOG1915|consen 176 AWLSFIKFELRYKEI-ERARSIYERFVLVH-PKVSNWIKYAR-FE-------EKHGNVALARSVYERAIEF-LGDDEEAE 244 (677)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHheec-ccHHHHHHHHH-HH-------HhcCcHHHHHHHHHHHHHH-hhhHHHHH
Confidence 399999999999999 89999999987655 88888765555 22 1889999999999876653 21 122
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcH---HHHHHH-----HHH
Q 010739 192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKY---VDAIKL-----VIH 259 (502)
Q Consensus 192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~---~~a~~~-----~~~ 259 (502)
..+++.-..=.++..++.|.-+|+-..+.= |...+-. +-.++.. -|+. ++++-- ++.
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~--pk~raee---------L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI--PKGRAEE---------LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccHHH---------HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 334444444446778888888888776543 2211100 1111111 1433 333221 222
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-------hchHHHHHHH--Hhc---CcHHhHHHH
Q 010739 260 LRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-------DGKNLGLIEK--YQS---DLLADGSRL 327 (502)
Q Consensus 260 m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~~li~~--~~~---g~~~~a~~~ 327 (502)
+.+. -.-|-.+|--.++.--.. |+.+...++++.-+.. ++|-. .+| .-|+- |.. .+.+.+.++
T Consensus 314 ~v~~-np~nYDsWfdylrL~e~~-g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY--LWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 314 EVSK-NPYNYDSWFDYLRLEESV-GDKDRIRETYERAIAN-VPPASEKRYWRRYIY--LWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHh-CCCCchHHHHHHHHHHhc-CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHH
Confidence 2222 233445555566666666 6788888888776433 33311 122 11222 222 788888888
Q ss_pred HHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739 328 SSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIE 403 (502)
Q Consensus 328 ~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~ 403 (502)
|+.... -+|. ..+||.-+--.|++ ..++..|.+++.... |..|-..+|-..|..-.+.++++.+.++++...
T Consensus 389 yq~~l~-lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 389 YQACLD-LIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHh-hcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 887776 3444 34788777777765 688889998888665 889999999999998889999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCch
Q 010739 404 VMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIG 483 (502)
Q Consensus 404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 483 (502)
+++. -|..+|.-.-..=...|+.|.|..+|+-.++. |...+=..|..+|..==-..|..+.|..+++.+.+..-..
T Consensus 465 e~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~q---p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 465 EFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQ---PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred hcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC---cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 8873 25556655555556779999999999987765 3334444455555311111688888888888886655333
Q ss_pred h
Q 010739 484 P 484 (502)
Q Consensus 484 ~ 484 (502)
+
T Consensus 541 k 541 (677)
T KOG1915|consen 541 K 541 (677)
T ss_pred h
Confidence 3
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.26 E-value=0.024 Score=50.12 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=93.7
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCC--hhH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAI-CASQNE--GSA 394 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~-~~~~~~--~~~ 394 (502)
++.+++...++........ |...|..+-..|...|++++|...|++..+. .| +...+..+-.+ +...|+ .++
T Consensus 53 ~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred hhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4556666666655555433 4458999999999999999999999987754 45 44555555554 356676 489
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010739 395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQG 455 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 455 (502)
|.++++.....+.. +...+..+-..+.+.|++++|...|+++.+.. .|+..-+. +|.+
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 99999988877633 67788888889999999999999999988754 34444433 3344
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.039 Score=49.53 Aligned_cols=171 Identities=12% Similarity=0.012 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHH
Q 010739 255 KLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQ 333 (502)
Q Consensus 255 ~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~ 333 (502)
++.+++......-+...-..-...|++. +++++|++..+.. .++ +... .=+..+.+ .+++-|.+.+++|.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~-~~~deAl~~~~~~--~~l--E~~A---l~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHD-GDFDEALKALHLG--ENL--EAAA---LNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcC-CChHHHHHHHhcc--chH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555444444434434444556666 7888887766652 111 1111 11222444 677777777777665
Q ss_pred cCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 010739 334 EGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC 409 (502)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p 409 (502)
.. +..|.+-|-.+|.+ .+++.+|+-+|++|.+ ...|+..+.|-...++...|++++|..+++........
T Consensus 166 id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 166 ID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred cc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 42 22466656666655 4567788888888864 36777788888888888888888888888777655533
Q ss_pred CHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 010739 410 KKKTLSWLLRGYIKGGHI-NDAAETLTKMLD 439 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 439 (502)
+..+..-+|..-...|.. +-..+.+.+.+.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 344444444444444443 333445555544
No 119
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.22 E-value=0.0067 Score=56.91 Aligned_cols=144 Identities=10% Similarity=0.057 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL 348 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 348 (502)
.+|..+++..-+. +..+.|..+|.+..+.+ +..++.... +++..++.++.+.|.++|+...+.-... ...|...+
T Consensus 2 ~v~i~~m~~~~r~-~g~~~aR~vF~~a~~~~~~~~~vy~~~-A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRT-EGIEAARKVFKRARKDKRCTYHVYVAY-ALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCS-THHHHHH-HHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHH
T ss_pred HHHHHHHHHHHHh-CChHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHHHHH
Confidence 4677788888888 56888888888875432 344444443 4555555577777888888777653333 34777888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 349 AMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
+-+.+.|+.+.|..+|++.... .|.. ..|...+.-=.+.|+++.+.++.+.+.+. .|+......+++-|
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 8888888888888888887754 3333 47888888778888888888887766654 23434444444433
No 120
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.054 Score=50.97 Aligned_cols=133 Identities=11% Similarity=0.032 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CC
Q 010739 343 VHERLLAMYICA-GRGLEAERQLWEMKLV----GKEAD--GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL-----CK 410 (502)
Q Consensus 343 ~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~-----p~ 410 (502)
++..+-..|-.. |++++|.+.|++-.+. | .+. ..++..+...+.+.|++++|.++|+........ .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 444445555555 7788888877775432 3 111 234556667889999999999999877654322 12
Q ss_pred HH-HHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739 411 KK-TLSWLLRGYIKGGHINDAAETLTKMLDL--GLYP--EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 411 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
.. .|-..+-++...|+...|.+.|++.... ++.. .......||+++-. .....+..++.-|+.+..
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~--~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE--GDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT--T-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHcccCc
Confidence 22 2222344556678999999999998754 3433 34567778888842 114456666666665544
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.18 E-value=0.03 Score=46.73 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=64.2
Q ss_pred HHHHHhcCcHHhHHHHHHHHHHcCCCC-chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh
Q 010739 312 LIEKYQSDLLADGSRLSSWAIQEGGSS-LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD--LYDIVLAICAS 388 (502)
Q Consensus 312 li~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~ 388 (502)
++..+..++...+...++.+....... ......-.+-..+...|++++|...|+......-.|+.. ..-.+-..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ 97 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 333333455555555555555543222 111222223345556677777777777766655222211 12223356666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
.|++++|...++..... ......+...-+.|.+.|+.++|...|++
T Consensus 98 ~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 98 QGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred cCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777777776553222 22333444466667777777777777764
No 122
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.21 Score=46.69 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=46.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcccc
Q 010739 384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW-LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVL-QGLRKRIQ 461 (502)
Q Consensus 384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~ 461 (502)
.+.+..|+..+|+++|-.+....++ |..+|-. |.++|.+.|+++.|++++-+| .-..+..+.--+| +-|-+
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk--- 473 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYK--- 473 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHH---
Confidence 4555556666777776555444333 4555544 666777777777777666554 2223333333333 33334
Q ss_pred ccccHHHHHHHHhhh
Q 010739 462 QSGNVEAYLNLCKRL 476 (502)
Q Consensus 462 ~~~~~~~a~~~~~~m 476 (502)
.+.+.-|.+.|+.+
T Consensus 474 -~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 474 -ANEFYYAAKAFDEL 487 (557)
T ss_pred -HHHHHHHHHhhhHH
Confidence 56666666666555
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.19 Score=45.26 Aligned_cols=150 Identities=10% Similarity=0.000 Sum_probs=105.3
Q ss_pred Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcC
Q 010739 316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICA----SQN 390 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~----~~~ 390 (502)
|.. |+.++|++.... .. +....-.=+..+.+..+++-|...+++|.+-. +..|.+-|-.++. ..+
T Consensus 118 ~~~~~~~deAl~~~~~-----~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHL-----GE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hhcCCChHHHHHHHhc-----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch
Confidence 777 999999997743 11 22234334455678889999999999998532 4556665555443 345
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHH
Q 010739 391 EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYL 470 (502)
Q Consensus 391 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~ 470 (502)
.+..|.-+|++|.+. ..|+..+.+.+..++...|++++|..++++.+++.-+ +..|...++-.-.. .+.+.+...
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~---~Gkd~~~~~ 262 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALH---LGKDAEVTE 262 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH---hCCChHHHH
Confidence 688999999999763 4689999999999999999999999999999887643 34444433333322 156666666
Q ss_pred HHHhhhhhcC
Q 010739 471 NLCKRLSDTS 480 (502)
Q Consensus 471 ~~~~~m~~~~ 480 (502)
+.+.++....
T Consensus 263 r~l~QLk~~~ 272 (299)
T KOG3081|consen 263 RNLSQLKLSH 272 (299)
T ss_pred HHHHHHHhcC
Confidence 6777776655
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.18 Score=52.38 Aligned_cols=243 Identities=14% Similarity=0.085 Sum_probs=146.7
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-CCC
Q 010739 145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR-GIA 223 (502)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-~~~ 223 (502)
.-|..|-..+++ +.- .. ..|+.+.|.+-.+.++. ..+|..|-++|.+..++|-|.--+..|... |..
T Consensus 723 ~Cd~~TRkaml~-FSf----yv-tiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR 790 (1416)
T KOG3617|consen 723 NCDESTRKAMLD-FSF----YV-TIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR 790 (1416)
T ss_pred ccCHHHHHhhhc-eeE----EE-EeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH
Confidence 347777777776 320 11 57999999987665543 468999999999999998887777777632 211
Q ss_pred --------CCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHH
Q 010739 224 --------YAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKG 295 (502)
Q Consensus 224 --------p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~ 295 (502)
|+. +- .-+.--...-|.+++|+.+|++-+.. . |++-+.+..|.+++|+++-+.
T Consensus 791 AlR~a~q~~~e-~e--------akvAvLAieLgMlEeA~~lYr~ckR~---------D-LlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 791 ALRRAQQNGEE-DE--------AKVAVLAIELGMLEEALILYRQCKRY---------D-LLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred HHHHHHhCCcc-hh--------hHHHHHHHHHhhHHHHHHHHHHHHHH---------H-HHHHHHHhcccHHHHHHHHhh
Confidence 110 00 00122222348999999999987753 2 444444444889999886543
Q ss_pred HHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHH----------HHHcCCC--------CchHhHHHHHHHHHH-HcC
Q 010739 296 YVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSW----------AIQEGGS--------SLYGVVHERLLAMYI-CAG 355 (502)
Q Consensus 296 m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~----------m~~~~~~--------~~~~~~~~~li~~~~-~~g 355 (502)
--+.-+. .||.. --.-+.. ++++.|++.|++ |.....+ ..|...|.- -..|. ..|
T Consensus 852 ~DRiHLr---~Tyy~-yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W-WgqYlES~G 926 (1416)
T KOG3617|consen 852 KDRIHLR---NTYYN-YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW-WGQYLESVG 926 (1416)
T ss_pred ccceehh---hhHHH-HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH-HHHHHhccc
Confidence 2111111 12211 1122223 788888887743 1111111 011111111 11222 267
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739 356 RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 356 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 435 (502)
+++.|+.+|+..+ -|-+++...|-+|+.++|-++-++- | |......|-+.|-..|++.+|..+|.
T Consensus 927 emdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 927 EMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred chHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7788887777655 3566777778889999887765543 2 55566678999999999999999998
Q ss_pred HHH
Q 010739 436 KML 438 (502)
Q Consensus 436 ~m~ 438 (502)
+..
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 753
No 125
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.39 Score=48.11 Aligned_cols=335 Identities=16% Similarity=0.073 Sum_probs=174.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHH--
Q 010739 120 LVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKV-- 197 (502)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~l-- 197 (502)
++-+.+.+.+ ++|......+...+.-|...+..=+-++. +.+++++|+.+.+. .+ -..+++..
T Consensus 19 ln~~~~~~e~-e~a~k~~~Kil~~~pdd~~a~~cKvValI--------q~~ky~~ALk~ikk---~~---~~~~~~~~~f 83 (652)
T KOG2376|consen 19 LNRHGKNGEY-EEAVKTANKILSIVPDDEDAIRCKVVALI--------QLDKYEDALKLIKK---NG---ALLVINSFFF 83 (652)
T ss_pred HHHhccchHH-HHHHHHHHHHHhcCCCcHhhHhhhHhhhh--------hhhHHHHHHHHHHh---cc---hhhhcchhhH
Confidence 4455666777 78888889888887335555655555577 88999999965542 22 11233333
Q ss_pred HHHHH--hcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHH
Q 010739 198 ISLYW--EMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLI 274 (502)
Q Consensus 198 i~~~~--~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 274 (502)
=.+|| +.++.|+|...++ |..++.. +- .+-.--+.+.|++++|+++|+.+.+.+. ..+..
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll--------~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~ 146 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-----GLDRLDDKLL--------ELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDE 146 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-----cccccchHHH--------HHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHH
Confidence 55665 6889999999988 3222211 00 0123334557999999999999977633 22333
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH--Hhc-CcHHhHHHHHHHHHHcC--------CCCchH--
Q 010739 275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK--YQS-DLLADGSRLSSWAIQEG--------GSSLYG-- 341 (502)
Q Consensus 275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~--~~~-g~~~~a~~~~~~m~~~~--------~~~~~~-- 341 (502)
-+.+=+.+ ...+... ..+......| ..+|....=.+ +.. |++.+|+++++.....+ ....+.
T Consensus 147 ~~r~nl~a---~~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~ 221 (652)
T KOG2376|consen 147 ERRANLLA---VAAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEE 221 (652)
T ss_pred HHHHHHHH---HHHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence 33322222 1111110 1122333344 22333222222 444 99999999887762211 111111
Q ss_pred ---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChh-HHHHHHH-------------
Q 010739 342 ---VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGS-AVSRLLS------------- 400 (502)
Q Consensus 342 ---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~-~a~~l~~------------- 400 (502)
.+---|--.+-..|+.++|..++........ +|. +.-|.++..-....-.+ .+...++
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~ 300 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSK 300 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHH
Confidence 1111233345558999999999988877643 232 12222222111111111 0000000
Q ss_pred ------------------------HHHH--cCCCCC--HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCCCCH--HH
Q 010739 401 ------------------------RIEV--MNSLCK--KKTLSWLLRGYI--KGGHINDAAETLTKMLDLGLYPEY--MD 448 (502)
Q Consensus 401 ------------------------~m~~--~~~~p~--~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t 448 (502)
..++ ....+. ...+.+++.... +.....+|.+++...-+.. |+- ..
T Consensus 301 Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v 378 (652)
T KOG2376|consen 301 LSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVV 378 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHH
Confidence 0011 111111 234444544433 2234677777777755443 433 33
Q ss_pred HHHHHHHHHccccccccHHHHHHHHh--------hhhhcCC---chhHHHHHHHhhcchhh
Q 010739 449 RVAVLQGLRKRIQQSGNVEAYLNLCK--------RLSDTSL---IGPCLVYLYIKKYKLWI 498 (502)
Q Consensus 449 ~~~ll~~~~~~~~~~~~~~~a~~~~~--------~m~~~~~---~~~~li~~y~~~g~~~~ 498 (502)
.-+.+.-... .|+++.|++++. .+.+-++ +..+++.+|.+.++-+.
T Consensus 379 ~L~~aQl~is----~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 379 LLLRAQLKIS----QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 3333333445 799999999988 4433332 55577888888776543
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.06 E-value=0.02 Score=47.03 Aligned_cols=92 Identities=11% Similarity=-0.064 Sum_probs=60.3
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMV 246 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~ 246 (502)
..|+.++|...|+.....+ +.+...|..+-..|.+.|++++|...+++..+.+ |+ ...+.. +...+..
T Consensus 29 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~--------la~~~~~ 97 (135)
T TIGR02552 29 QQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFH--------AAECLLA 97 (135)
T ss_pred HcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHH--------HHHHHHH
Confidence 6788888888888776653 3366777777778888888888888887766554 22 122211 3445555
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEVYSY 272 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~~ty 272 (502)
.|++++|.+.|+...+. .|+...+
T Consensus 98 ~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 98 LGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred cCCHHHHHHHHHHHHHh--ccccchH
Confidence 68888888877766654 4554443
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.042 Score=49.16 Aligned_cols=154 Identities=13% Similarity=0.048 Sum_probs=111.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010739 121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL 200 (502)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 200 (502)
..+.-.|+. +..+.+..........|....+....... +.|++.+|...|.+.... -++|..+||.+--+
T Consensus 74 ~a~~~~G~a-~~~l~~~~~~~~~~~~d~~ll~~~gk~~~--------~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 74 TALYLRGDA-DSSLAVLQKSAIAYPKDRELLAAQGKNQI--------RNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred HHHHhcccc-cchHHHHhhhhccCcccHHHHHHHHHHHH--------HhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 344445555 55555555544333457777777777777 899999999999998764 66799999999999
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010739 201 YWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAV 279 (502)
Q Consensus 201 ~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 279 (502)
|-+.|++++|..-|.+..+-. |+. ..+|. +...++..|+.+.|..++..-...+-. |...-..+....
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nN--------lgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~ 212 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA--PNEPSIANN--------LGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVV 212 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc--cCCchhhhh--------HHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHH
Confidence 999999999999998876543 222 12222 666777789999999999988776443 444456666777
Q ss_pred HhccccHHHHHHHHHHH
Q 010739 280 VKELNEFGKALRKLKGY 296 (502)
Q Consensus 280 ~~~~~~~~~a~~~~~~m 296 (502)
... |++++|..+...-
T Consensus 213 ~~~-g~~~~A~~i~~~e 228 (257)
T COG5010 213 GLQ-GDFREAEDIAVQE 228 (257)
T ss_pred hhc-CChHHHHhhcccc
Confidence 777 7899997765443
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.04 E-value=0.27 Score=52.95 Aligned_cols=126 Identities=14% Similarity=0.037 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHH--------------
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDL-------------- 178 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~-------------- 178 (502)
.+..|+..+...+++ +.|.++.+.-.+.. .+....|..+|. . ..++.+.+..+
T Consensus 33 a~~~Li~~~~~~~~~-deai~i~~~~l~~~P~~i~~yy~~G~l~--~--------q~~~~~~~~lv~~l~~~~~~~~~~~ 101 (906)
T PRK14720 33 ELDDLIDAYKSENLT-DEAKDICEEHLKEHKKSISALYISGILS--L--------SRRPLNDSNLLNLIDSFSQNLKWAI 101 (906)
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCcceehHHHHHHHH--H--------hhcchhhhhhhhhhhhcccccchhH
Confidence 388999999999999 89999998666554 334444444433 1 23333333333
Q ss_pred ----HHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHH
Q 010739 179 ----LVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAI 254 (502)
Q Consensus 179 ----~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~ 254 (502)
...|...+ -+-..+-.+..+|-+.|+.++|..++++..+.+ .-|....|. +.+.+... +.++|.
T Consensus 102 ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn--------~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 102 VEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKK--------LATSYEEE-DKEKAI 169 (906)
T ss_pred HHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHH--------HHHHHHHh-hHHHHH
Confidence 22222211 122466667777788888888888888888776 222222222 66666666 888888
Q ss_pred HHHHHHHHc
Q 010739 255 KLVIHLRES 263 (502)
Q Consensus 255 ~~~~~m~~~ 263 (502)
+++.+-...
T Consensus 170 ~m~~KAV~~ 178 (906)
T PRK14720 170 TYLKKAIYR 178 (906)
T ss_pred HHHHHHHHH
Confidence 887765544
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.01 E-value=0.017 Score=48.14 Aligned_cols=99 Identities=9% Similarity=-0.069 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739 113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS 192 (502)
Q Consensus 113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 192 (502)
|+.+...-..+.+.|++ +.|...|+........+...|..+-..+. ..|++++|...|+...+.. +.+..
T Consensus 24 p~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~--------~~g~~~~A~~~y~~Al~l~-p~~~~ 93 (144)
T PRK15359 24 PETVYASGYASWQEGDY-SRAVIDFSWLVMAQPWSWRAHIALAGTWM--------MLKEYTTAINFYGHALMLD-ASHPE 93 (144)
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHhcC-CCCcH
Confidence 33444566778899999 89999999998887557888888777666 8999999999999998853 34778
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.+..+-.++.+.|+.++|...|+...+..
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999987654
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.00 E-value=0.03 Score=54.71 Aligned_cols=118 Identities=10% Similarity=-0.031 Sum_probs=62.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739 275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC 353 (502)
Q Consensus 275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 353 (502)
++..+... +.++.|.++++++.+.. |+... .|...+.. ++-.+|.+++.+....... +....+.-...|.+
T Consensus 175 Ll~~l~~t-~~~~~ai~lle~L~~~~--pev~~---~LA~v~l~~~~E~~AI~ll~~aL~~~p~--d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 175 LLKYLSLT-QRYDEAIELLEKLRERD--PEVAV---LLARVYLLMNEEVEAIRLLNEALKENPQ--DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHhhc-ccHHHHHHHHHHHHhcC--CcHHH---HHHHHHHhcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHh
Confidence 34444444 56777777777765443 44332 34444544 5566666666655533222 22344444444555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 354 AGRGLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
.++.+.|+.+.+++.+ ..|+.. +|..|..+|...|+++.|...++.+
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666553 344333 5555556666666666665555443
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.97 E-value=0.12 Score=51.08 Aligned_cols=175 Identities=12% Similarity=0.017 Sum_probs=125.2
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHHHhcCcHHhHHHH
Q 010739 249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEKYQSDLLADGSRL 327 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~~~~g~~~~a~~~ 327 (502)
+.+...+++++....-..--+-+|...|+..-+. ..+..|..+|.+..+.+..+ ++++++ +++..|+.++.+-|.++
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~-eGlkaaR~iF~kaR~~~r~~hhVfVa~-A~mEy~cskD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA-EGLKAARKIFKKAREDKRTRHHVFVAA-ALMEYYCSKDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh-hhHHHHHHHHHHHhhccCCcchhhHHH-HHHHHHhcCChhHHHHH
Confidence 3566667777776653222345677888888888 56999999999997777777 777776 89999999999999999
Q ss_pred HHHH-HHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 328 SSWA-IQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 328 ~~~m-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
|+-= ...|..+ .--+..+.-+...++-..|..+|++....++.||. ..|..+|+-=+.-|++..+.++-+.+..
T Consensus 424 FeLGLkkf~d~p---~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKKFGDSP---EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhcCCCh---HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9753 3333322 23455677777888889999999999988776654 6799999988999999998888765532
Q ss_pred -cC--CCCCHHHHHHHHHHHHhCCCHH
Q 010739 405 -MN--SLCKKKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 405 -~~--~~p~~~~~~~li~~~~~~g~~~ 428 (502)
+. ..+...+-..+++-|.-.+...
T Consensus 501 af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 501 AFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcchhhcCCCChHHHHHHHHhhccccc
Confidence 22 3333344445666666655543
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.96 E-value=0.21 Score=52.86 Aligned_cols=139 Identities=8% Similarity=-0.102 Sum_probs=106.8
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhc
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL-AICASQ 389 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~~ 389 (502)
|-..-.. |+.++|+.+++...+.... +...+..+...+.+.+++++|+..+++... ..|+..+.-.+. .++...
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHh
Confidence 4455555 9999999999887776433 345778888999999999999999998885 467766655555 788899
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
|++++|..+|+.....+ .-+...+..+-.++-..|+.++|...|++..+.- .|....|+..+.-+
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~ 232 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLVDL 232 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHHHH
Confidence 99999999999988733 2347788888999999999999999999987642 34455665554444
No 133
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.94 E-value=0.034 Score=49.12 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCc--H
Q 010739 131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL-YWEMEK--K 207 (502)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~-~~~~g~--~ 207 (502)
+++...++...+....|...|..+-..+. ..|++++|...|+...+..- -|...+..+-.+ |.+.|+ .
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~--------~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYL--------WRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCc
Confidence 34444455544444346666666666555 66777777777776665432 255556655554 345555 3
Q ss_pred HHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhH
Q 010739 208 ERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYS 271 (502)
Q Consensus 208 ~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 271 (502)
++|.+++++..+.+-. +...+.. +...+...|++++|+..|+++.+. ..|+..-
T Consensus 127 ~~A~~~l~~al~~dP~-~~~al~~--------LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r 180 (198)
T PRK10370 127 PQTREMIDKALALDAN-EVTALML--------LASDAFMQADYAQAIELWQKVLDL-NSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHH--------HHHHHHHcCCHHHHHHHHHHHHhh-CCCCccH
Confidence 6777777776655511 1111111 444445567777777777776654 3344433
No 134
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.41 Score=45.91 Aligned_cols=262 Identities=10% Similarity=0.015 Sum_probs=152.5
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH--hCcHHHHHHHHHHHHHcC
Q 010739 187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV--EGKYVDAIKLVIHLRESG 264 (502)
Q Consensus 187 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~--~g~~~~a~~~~~~m~~~g 264 (502)
++-|+.....+-+.+...|+.++|+..|++....+ |+..+- .-.++++. .|+++....+...+....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~---------MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA---------MDLYAVLLGQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh---------HHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence 66788889999999999999999999999876554 332111 12344443 689999888888776541
Q ss_pred CCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH--Hhc-CcHHhHHHHHHHHHHcCCCCchH
Q 010739 265 LKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK--YQS-DLLADGSRLSSWAIQEGGSSLYG 341 (502)
Q Consensus 265 ~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~--~~~-g~~~~a~~~~~~m~~~~~~~~~~ 341 (502)
+-+..-|-.-....... +++..|+.+.++.++. .|+.+-. .++.+ ... ++.++|.=-|+....-. |-+.
T Consensus 297 -~~ta~~wfV~~~~l~~~-K~~~rAL~~~eK~I~~--~~r~~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL 368 (564)
T KOG1174|consen 297 -KYTASHWFVHAQLLYDE-KKFERALNFVEKCIDS--EPRNHEA--LILKGRLLIALERHTQAVIAFRTAQMLA--PYRL 368 (564)
T ss_pred -hcchhhhhhhhhhhhhh-hhHHHHHHHHHHHhcc--CcccchH--HHhccHHHHhccchHHHHHHHHHHHhcc--hhhH
Confidence 11222222222222233 5788888877666433 3433332 35554 555 99999999887655443 3455
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHh-cCChhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV-LAICAS-QNEGSAVSRLLSRIEVMNSLCK-KKTLSWLL 418 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-i~~~~~-~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li 418 (502)
.+|.-|+++|...|++.+|.-+-++.... +.-+..+...+ -..|.- ..--+.|.++++.-.. ..|+ ....+.+-
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHH
Confidence 69999999999999999998766553321 11122222222 011111 1122345555543322 2232 23344455
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 419 RGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
..+...|..+++..++++-+. ..||..-.+.|-+-+.. .+...+++..|...
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A----~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRA----QNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHH----hhhHHHHHHHHHHH
Confidence 556666677777777666443 34666666666555544 45555555554443
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.91 E-value=0.038 Score=46.06 Aligned_cols=90 Identities=11% Similarity=-0.050 Sum_probs=47.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739 275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC 353 (502)
Q Consensus 275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 353 (502)
.-.++.+. |++++|...|+..... .|+...+...+-..+.+ |++++|...|++......... ..+..+-.++.+
T Consensus 30 ~g~~~~~~-g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~--~a~~~lg~~l~~ 104 (144)
T PRK15359 30 SGYASWQE-GDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP--EPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHH
Confidence 34444455 5666666666555333 23222221134444555 666666666666555433222 355556666666
Q ss_pred cCChHHHHHHHHHHHH
Q 010739 354 AGRGLEAERQLWEMKL 369 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~~ 369 (502)
.|+.++|...|++..+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666553
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.86 E-value=0.53 Score=46.15 Aligned_cols=137 Identities=16% Similarity=0.046 Sum_probs=82.3
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
..|+.++|+..++.+.+. .+-|+.......+.+.+.++.++|.+.++.+.... |+.... .-.....++..
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l-------~~~~a~all~~ 387 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLL-------QLNLAQALLKG 387 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHH-------HHHHHHHHHhc
Confidence 567777777777776653 44456666666677777777777777777776544 331000 00123334445
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~ 326 (502)
|++.+|+++++..... .+-|...|..|-.+|... |+..++.. +.-.+|.. |+++.|..
T Consensus 388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~-g~~~~a~~-------------------A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAEL-GNRAEALL-------------------ARAEGYALAGRLEQAII 446 (484)
T ss_pred CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHh-CchHHHHH-------------------HHHHHHHhCCCHHHHHH
Confidence 7777777777766544 445667777777777777 56666644 23334444 66666666
Q ss_pred HHHHHHHcC
Q 010739 327 LSSWAIQEG 335 (502)
Q Consensus 327 ~~~~m~~~~ 335 (502)
.+....+..
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 665544443
No 137
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.77 E-value=0.03 Score=41.77 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+..+...+.+.|++ +.|..+|+...+....+...+..+...+. ..+++++|...|+...+.. +.+..++.
T Consensus 3 ~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDY-DEALEYYEKALELDPDNADAYYNLAAAYY--------KLGKYEEALEDYEKALELD-PDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhcH-HHHHHHHHHHHhcCCccHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhCC-CcchhHHH
Confidence 34556667788999 89999999998776445556666666555 7899999999999987754 33556888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSR 220 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~ 220 (502)
.+...+...|+.++|...++...+.
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 8999999999999999999887643
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.76 E-value=0.033 Score=41.50 Aligned_cols=94 Identities=18% Similarity=0.059 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739 344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK 423 (502)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 423 (502)
|..+...+...|++++|...+++..+.. ..+...+..+...+...++++.|.+.++...... ..+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555566666777777766665432 1122444445556666666666666666555443 2233455566666777
Q ss_pred CCCHHHHHHHHHHHHH
Q 010739 424 GGHINDAAETLTKMLD 439 (502)
Q Consensus 424 ~g~~~~A~~l~~~m~~ 439 (502)
.|+.++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766543
No 139
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.74 E-value=0.04 Score=51.69 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=100.3
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
.++....+ +.++.|..+|.+....+....++....+++. |...++.+.|..+|+...+. +.-+...|...++.+.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 57778888 8899999999998866655556555555553 33356777799999998865 555777788888999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 390 NEGSAVSRLLSRIEVMNSLCKK----KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
++.+.|..+|+..... .|.. ..|...|.-=.+.|+.+.+.++.+++.+. -|+...+..+++-|
T Consensus 84 ~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 84 NDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp T-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred CcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999887654 3333 48888898888999999999999998763 34444444444433
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.72 E-value=0.0055 Score=45.69 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=7.9
Q ss_pred HHHHHhCCCHHHHHHHHH
Q 010739 418 LRGYIKGGHINDAAETLT 435 (502)
Q Consensus 418 i~~~~~~g~~~~A~~l~~ 435 (502)
-.+|.+.|++++|.++|+
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 344444444444444444
No 141
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.75 Score=45.63 Aligned_cols=162 Identities=12% Similarity=-0.040 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCch-----HhHHH
Q 010739 272 YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLY-----GVVHE 345 (502)
Q Consensus 272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ 345 (502)
+..+.++..+. .+++.+.+-++.-.... ...+|.+..-..|.. |...+....-+..++.|...+- ...+.
T Consensus 227 ek~lgnaaykk-k~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKK-KDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455555555 56777766555543332 334443234444666 7777666666555555422211 01222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------------------------HHHHHhcCChhHHHHHHH
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV-------------------------LAICASQNEGSAVSRLLS 400 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-------------------------i~~~~~~~~~~~a~~l~~ 400 (502)
.+-.+|.+.++.+.|...|.+-......||..+=..- -..+.+.|++..|.+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 2334566677888888888886666555543221100 112333445555555554
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 401 RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 401 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
++.... .-|...|+----+|.+.|.+.+|++=.+.-+
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444443 2244455555555555555555554444433
No 142
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.70 E-value=0.6 Score=44.48 Aligned_cols=104 Identities=8% Similarity=0.008 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 377 DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 377 ~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
.+.+..|.-|...|....|.++-.+ ++ .|+..-|...|.+|+..+++++-.++-.. +-.++=|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~---Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE---FK-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH---cC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 3455556666666776666655333 33 36777777777777777777766654332 12335677777777
Q ss_pred HccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhhh
Q 010739 457 RKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 457 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~ 499 (502)
.+ .|...+|.++...+ ....-+.+|.+||++..|
T Consensus 248 ~~----~~~~~eA~~yI~k~-----~~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 248 LK----YGNKKEASKYIPKI-----PDEERVEMYLKCGDYKEA 281 (319)
T ss_pred HH----CCCHHHHHHHHHhC-----ChHHHHHHHHHCCCHHHH
Confidence 76 56777777776542 235667777777776554
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.69 E-value=0.091 Score=43.83 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV--LAICASQNEGSAVSRLLSRIEVMNSLCKKK--TLSWLL 418 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--i~~~~~~~~~~~a~~l~~~m~~~~~~p~~~--~~~~li 418 (502)
.|..++..+ ..++...+...++.+....-.-.-.....| -..+...|++++|...|+........|+.. ..-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 666666666 488889999999998875321111222222 267888999999999999888766333222 222377
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhh
Q 010739 419 RGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKR 475 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~ 475 (502)
..+...|++++|+..++......+. ...+...=+.+.+ .|+.++|...++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~--~~~~~~~Gdi~~~----~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFK--ALAAELLGDIYLA----QGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchH--HHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 8888999999999999774333332 2233334444455 7999999988764
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.62 E-value=1.2 Score=47.00 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=23.1
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
+.|..++|..+++.....+.. |..|...+-.+|.+.|+.++|..+++...
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444444444444333333 44444444444444444454444444443
No 145
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.59 E-value=0.032 Score=45.02 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=45.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 010739 405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL-GLYPEYMDRVAVLQGL 456 (502)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~ 456 (502)
....|+..+..+++.+|+..|++..|+++.+...+. ++..+..+|..|++-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 446889999999999999999999999999987764 6888899999999887
No 146
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.69 Score=43.43 Aligned_cols=193 Identities=12% Similarity=0.012 Sum_probs=110.4
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhc-c--ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHH
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTA-VVKE-L--NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKY 316 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~-~~~~-~--~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~ 316 (502)
+.-++..+++.+|..+.+++. -..|-.+..-.+..+ +++. | ..+.-|.+.|+-.-..+.+-|...-..++-..+
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 444456788888888776543 123333333332222 2222 1 223444444433355666666655544555555
Q ss_pred hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChhH
Q 010739 317 QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL-AICASQNEGSA 394 (502)
Q Consensus 317 ~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~~ 394 (502)
-- -++++++-.++....- ....|.+-|| +-.+++..|.+.+|+++|-+.....+ -|..+|-+++ .+|.+.+..+.
T Consensus 370 FL~~qFddVl~YlnSi~sY-F~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESY-FTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 44 6777777766554332 3333534443 56778888888889888876653333 3667777777 67788888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 395 VSRLLSRIEVMNSLCKKKTLSWL-LRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
|+.++-.+.. ..+..+.-.+ ..-|-+.+.+--|-+.|+++....
T Consensus 447 AW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 447 AWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 8766544432 2223333333 345667788877777787766543
No 147
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.57 Score=42.18 Aligned_cols=149 Identities=10% Similarity=-0.069 Sum_probs=100.7
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|+-+....+....... .+.|...-+..+....+.|++.+|...|.+... .-.+|..+|+.+=-+|.+.|+.+.|..-
T Consensus 80 G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~a 156 (257)
T COG5010 80 GDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQLGRFDEARRA 156 (257)
T ss_pred ccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHccChhHHHHH
Confidence 6666666655432222 223434566677888888999999988888764 3466778888888888888999888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
+....+.... +...+|-|--.|.-.|+.+.|..++......+-. |...-..+...... .|++++|..+...-
T Consensus 157 y~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~----~g~~~~A~~i~~~e 228 (257)
T COG5010 157 YRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGL----QGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhh----cCChHHHHhhcccc
Confidence 7655554322 4455666777777788999999888887776643 33333444444444 68888888876544
No 148
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.49 E-value=0.47 Score=47.43 Aligned_cols=221 Identities=9% Similarity=-0.004 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCC------
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLK------ 188 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~------ 188 (502)
.|..|=..-+.+++- ..|+.-+.+..+...-|....-.|--.+. ..|.-..|+.+|+.-.+...+
T Consensus 321 AW~~LG~~qaENE~E-~~ai~AL~rcl~LdP~NleaLmaLAVSyt--------Neg~q~~Al~~L~~Wi~~~p~y~~l~~ 391 (579)
T KOG1125|consen 321 AWQKLGITQAENENE-QNAISALRRCLELDPTNLEALMALAVSYT--------NEGLQNQALKMLDKWIRNKPKYVHLVS 391 (579)
T ss_pred HHHHhhhHhhhccch-HHHHHHHHHHHhcCCccHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHhCccchhccc
Confidence 388888888888888 79999999888887446666666666677 889999999999887654311
Q ss_pred --CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739 189 --PGFSMIEKVISLYWEMEKKERAVLFVKAVL-SRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL 265 (502)
Q Consensus 189 --p~~~~y~~li~~~~~~g~~~~A~~l~~~m~-~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 265 (502)
++...-+. ..+.....+....++|-++. +.+..+|...+.. +---+...|.+++|++.|+.... +
T Consensus 392 a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~--------LGVLy~ls~efdraiDcf~~AL~--v 459 (579)
T KOG1125|consen 392 AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG--------LGVLYNLSGEFDRAVDCFEAALQ--V 459 (579)
T ss_pred cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh--------hHHHHhcchHHHHHHHHHHHHHh--c
Confidence 01100000 22233334556666666664 4452233333322 33334457999999999998876 4
Q ss_pred CCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch--hchHHHHHHHHhc-CcHHhHHHHHHHHHH---cC---
Q 010739 266 KPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL--DGKNLGLIEKYQS-DLLADGSRLSSWAIQ---EG--- 335 (502)
Q Consensus 266 ~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~~li~~~~~-g~~~~a~~~~~~m~~---~~--- 335 (502)
+|+ ...||-|-..++.. .+.++|++-+++-++. .|+- +-|| |--.|.. |.+++|.+.|-.... .+
T Consensus 460 ~Pnd~~lWNRLGAtLAN~-~~s~EAIsAY~rALqL--qP~yVR~RyN--lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 460 KPNDYLLWNRLGATLANG-NRSEEAISAYNRALQL--QPGYVRVRYN--LGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred CCchHHHHHHhhHHhcCC-cccHHHHHHHHHHHhc--CCCeeeeehh--hhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 665 56788888888888 8999999988877443 4432 3355 5555666 999999998754332 21
Q ss_pred --CCCchHhHHHHHHHHHHHcCChHHHH
Q 010739 336 --GSSLYGVVHERLLAMYICAGRGLEAE 361 (502)
Q Consensus 336 --~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (502)
.+..+.-.|.+|=.++.-.++.|-+.
T Consensus 535 ~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 535 NKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 11112236666666666666655444
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.59 Score=41.91 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=137.1
Q ss_pred HhCcHHHHHHHHHHHHHc---C-CCCCHhH-HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH-Hhc-
Q 010739 246 VEGKYVDAIKLVIHLRES---G-LKPEVYS-YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-YQS- 318 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~---g-~~p~~~t-y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-~~~- 318 (502)
...+.++.++++.+|... | ..|+..+ |--++-+.... +..+-|...++++.+.- |.+.-.. .|-.+ +..
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~-~~~~lAq~C~~~L~~~f--p~S~RV~-~lkam~lEa~ 99 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDT-GRDDLAQKCINQLRDRF--PGSKRVG-KLKAMLLEAT 99 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhC--CCChhHH-HHHHHHHHHh
Confidence 346789999999988764 5 7777754 56677777777 78999999999984442 4333221 23333 444
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|..++|.++++...++. +.|.++|-.=+...-..|+--+|++-+.+..+ .+.-|...|.-+-..|...|+++.|.--
T Consensus 100 ~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 99999999999988876 44667888777777778888899988888775 4677999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCC
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKGG---HINDAAETLTKMLDLG 441 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g 441 (502)
++++.-.. +.+...+..+-..+.-.| +.+-|.+.|.+-.+..
T Consensus 177 lEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 177 LEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 99887654 223444444555443333 5677888888876644
No 150
>PLN02789 farnesyltranstransferase
Probab=96.48 E-value=0.85 Score=43.59 Aligned_cols=150 Identities=6% Similarity=-0.022 Sum_probs=77.1
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCh----hH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ---NEG----SA 394 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---~~~----~~ 394 (502)
+++..+++++...... +..+|+...-.+.+.|+++++++.++++.+.... |...|+..-..+.+. |.. ++
T Consensus 125 ~~el~~~~kal~~dpk--Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLDAK--NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 4445555555544332 2336666666666667777777777777665432 333444433333332 112 23
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccc------
Q 010739 395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKG----GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSG------ 464 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~------ 464 (502)
..+......... .-|...|+.+...+... ++..+|.+.+.+..+.+ ..+......|++.++...+..+
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 444443333333 22566666666555552 33455777776655533 2345566667777664221111
Q ss_pred --------cHHHHHHHHhhh
Q 010739 465 --------NVEAYLNLCKRL 476 (502)
Q Consensus 465 --------~~~~a~~~~~~m 476 (502)
..+.|.+++..+
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hccccccccHHHHHHHHHHH
Confidence 346677777666
No 151
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.42 E-value=0.43 Score=44.94 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh--c-c--ccHHHHHHHHHHH-HHcCCC--CchhchHHHHHHHHhc---
Q 010739 250 YVDAIKLVIHLRESGLKPEVYSYLIALTAVVK--E-L--NEFGKALRKLKGY-VRAGSI--AELDGKNLGLIEKYQS--- 318 (502)
Q Consensus 250 ~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~--~-~--~~~~~a~~~~~~m-~~~g~~--p~~~~~~~~li~~~~~--- 318 (502)
+++.+.+++.|.+.|++-+..+|-+..-.... . . ....+|..+++.| .+..+- ++-.++. +|+..-..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a-~lLA~~~~~~e 156 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFA-ALLAMTSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHH-HHHhcccccHH
Confidence 55566788899999999999888774444444 1 0 2467788888888 444443 2333332 34433211
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCCHHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGR---GLEAERQLWEMKLVGKEADGDLYDI 381 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ 381 (502)
...+.++.+|+.+...|....|..-+-+-|-+++.... ..++.++++.+++.|+++....|..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 22456666777777766554444444444444444211 3456677777777777766655543
No 152
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.41 E-value=0.45 Score=49.18 Aligned_cols=214 Identities=11% Similarity=0.042 Sum_probs=137.6
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHH
Q 010739 180 VDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIH 259 (502)
Q Consensus 180 ~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 259 (502)
.++....+.-|...|..|-=+..++|+++.+.+.|++..-.-+.-. ..|. .+...+.-+|.-..|+.++++
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~-e~w~--------~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEH-ERWY--------QLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH-HHHH--------HHHHHHHHhccchHHHHHHHh
Confidence 3444445666888999999999999999999999998764322111 1111 134444456888889988887
Q ss_pred HHHcCCCCCHhHHHHHHH-HHHhccccHHHHHHHHHHHHH-----cCCCCchhchHHHHHHHHh-----------c-CcH
Q 010739 260 LRESGLKPEVYSYLIALT-AVVKELNEFGKALRKLKGYVR-----AGSIAELDGKNLGLIEKYQ-----------S-DLL 321 (502)
Q Consensus 260 m~~~g~~p~~~ty~~li~-~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~~li~~~~-----------~-g~~ 321 (502)
-....-.|+..+--.++. .|.+.-+.+++++++..+.++ .+.- ....|- .+--+|+ + ...
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l-~~~~~l-~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL-KPRGYL-FLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh-hhhHHH-HHHHHHHhHhhcCCChHHHHHHH
Confidence 654433355444334444 344443556666665544433 1111 112221 1111121 1 235
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLS- 400 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~- 400 (502)
.++.+.+++.++.+..+++++.|-++ -|+..++++.|++...+..+.+-.-+...|..+.-.+...+++.+|..+.+
T Consensus 461 ~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 67777888888888777775555444 466788999999999999988777788899888888888999999999985
Q ss_pred HHHHcC
Q 010739 401 RIEVMN 406 (502)
Q Consensus 401 ~m~~~~ 406 (502)
.+.++|
T Consensus 539 al~E~~ 544 (799)
T KOG4162|consen 539 ALEEFG 544 (799)
T ss_pred HHHHhh
Confidence 344554
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.36 E-value=0.16 Score=40.26 Aligned_cols=99 Identities=10% Similarity=-0.059 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKE-A-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL--CKKKTLSWLL 418 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~--p~~~~~~~li 418 (502)
++-.....+.+.|++++|...|+.+....-. | ....+..+...+...|+++.|.+.++........ .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4444555566666666666666666543210 1 1223344455666666666666666665543211 1133445555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCC
Q 010739 419 RGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
..+.+.|+.++|...+++..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66667777777777777766653
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.34 E-value=0.095 Score=41.61 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCC--C-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CC
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENR--V-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LK 188 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~ 188 (502)
+.+-.+...+.+.|++ +.|.+.|+.+.+... + ....+..+...+. +.|+++.|...|+...... ..
T Consensus 3 ~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDY-ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY--------AQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCccccHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHHCCCCC
Confidence 3455666777888999 899999999987651 2 1334555566566 8999999999999987642 12
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 189 PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 189 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.....+..+...+.+.|+.++|.+.++++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 235668888889999999999999999998775
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.33 E-value=0.0088 Score=44.58 Aligned_cols=80 Identities=9% Similarity=-0.000 Sum_probs=42.2
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV-LAICASQNEGSAVSR 397 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-i~~~~~~~~~~~a~~ 397 (502)
|+++.|..+|+++........+...+-.+-.+|.+.|++++|..++++ ....|+......+ -.+|.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~---~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK---LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC---HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 566666666666666554221323344466666667777777666666 1222333222222 356666666666666
Q ss_pred HHHH
Q 010739 398 LLSR 401 (502)
Q Consensus 398 l~~~ 401 (502)
+++.
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6643
No 156
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.24 E-value=1.5 Score=43.96 Aligned_cols=258 Identities=11% Similarity=0.026 Sum_probs=153.7
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010739 123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYW 202 (502)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 202 (502)
+.++|.. ..|.=.|+...+...-+...|--|-.... ..++-..|+.-|++-.+..- -|....-+|--.|.
T Consensus 295 lm~nG~L-~~A~LafEAAVkqdP~haeAW~~LG~~qa--------ENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 295 LMKNGDL-SEAALAFEAAVKQDPQHAEAWQKLGITQA--------ENENEQNAISALRRCLELDP-TNLEALMALAVSYT 364 (579)
T ss_pred HHhcCCc-hHHHHHHHHHHhhChHHHHHHHHhhhHhh--------hccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHh
Confidence 3567778 68888888888777346777876666555 66666777777777666422 25677778888889
Q ss_pred hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739 203 EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE 282 (502)
Q Consensus 203 ~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 282 (502)
..|.-.+|.+.|+.......+-- .+-.....++.+ +. ..+...
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~--------------~l~~a~~~~~~~---------------~~--------~s~~~~ 407 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYV--------------HLVSAGENEDFE---------------NT--------KSFLDS 407 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccch--------------hccccCcccccc---------------CC--------cCCCCH
Confidence 99999999999998876542200 000000001100 00 111111
Q ss_pred cccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHH
Q 010739 283 LNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEA 360 (502)
Q Consensus 283 ~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (502)
..+....++|-++ ...+..+|..++. .|--.|-- |.++.|...|+...... |.|...||-|-..++...+.++|
T Consensus 408 -~~l~~i~~~fLeaa~~~~~~~DpdvQ~-~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EA 483 (579)
T KOG1125|consen 408 -SHLAHIQELFLEAARQLPTKIDPDVQS-GLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEA 483 (579)
T ss_pred -HHHHHHHHHHHHHHHhCCCCCChhHHh-hhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHH
Confidence 2334444445555 4455333333332 44444545 77777777777655543 33556888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHH---HHHHcC------CCCCHHHHHHHHHHHHhCCCHHH
Q 010739 361 ERQLWEMKLVGKEADGD--LYDIVLAICASQNEGSAVSRLLS---RIEVMN------SLCKKKTLSWLLRGYIKGGHIND 429 (502)
Q Consensus 361 ~~l~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~l~~---~m~~~~------~~p~~~~~~~li~~~~~~g~~~~ 429 (502)
+.-|++..+ ++|+-+ -||.-| +|...|.+++|.+.|= .|...+ ..++...|.+|=.++.-.++.|.
T Consensus 484 IsAY~rALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 484 ISAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 888888774 556532 344443 5667788887777662 223221 12344577776666666777765
Q ss_pred HHHHH
Q 010739 430 AAETL 434 (502)
Q Consensus 430 A~~l~ 434 (502)
+.+..
T Consensus 561 l~~a~ 565 (579)
T KOG1125|consen 561 LQEAA 565 (579)
T ss_pred HHHhc
Confidence 54443
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.10 E-value=1.3 Score=41.74 Aligned_cols=134 Identities=17% Similarity=0.181 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcC-CC-ChH----HHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKEN-RV-DNE----TMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP 189 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~-~~~----~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p 189 (502)
|+..-..|...|++ ++|.+.|....+.. .. +.. .|..... +. +..++++|..
T Consensus 38 y~~Aa~~fk~~~~~-~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~-~~--------k~~~~~~Ai~------------ 95 (282)
T PF14938_consen 38 YEKAANCFKLAKDW-EKAAEAYEKAADCYEKLGDKFEAAKAYEEAAN-CY--------KKGDPDEAIE------------ 95 (282)
T ss_dssp HHHHHHHHHHTT-C-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-HH--------HHTTHHHHHH------------
T ss_pred HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HH--------HhhCHHHHHH------------
Confidence 55566677788888 78888887775332 11 111 2222212 11 2334444444
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh-CcHHHHHHHHHHHHHc----C
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE-GKYVDAIKLVIHLRES----G 264 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~m~~~----g 264 (502)
.|...+..|.+.|++..|-+.+.++-+. +-.. |++++|++.|++-... |
T Consensus 96 ---~~~~A~~~y~~~G~~~~aA~~~~~lA~~-----------------------ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 96 ---CYEKAIEIYREAGRFSQAAKCLKELAEI-----------------------YEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp ---HHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------------------HCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHHHHHHHH-----------------------HHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 4666778888889888888887766321 1123 6778888877765432 2
Q ss_pred CCCC--HhHHHHHHHHHHhccccHHHHHHHHHHHHHc
Q 010739 265 LKPE--VYSYLIALTAVVKELNEFGKALRKLKGYVRA 299 (502)
Q Consensus 265 ~~p~--~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~ 299 (502)
.+. ..++.-+...+.+. +++++|.++|++....
T Consensus 150 -~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 150 -SPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKK 184 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHT
T ss_pred -ChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Confidence 111 23445556666666 6777777777766443
No 158
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.02 E-value=0.26 Score=39.76 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
|..++.++|-++++.|+++....+++..- |+.++...=. +. .-......|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~-----------------~~---------~~~~spl~Pt~ 52 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKE-----------------GD---------YPPSSPLYPTS 52 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcccc-----------------Cc---------cCCCCCCCCCH
Confidence 56789999999999999999999886553 3333211000 00 11234688999
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEK 315 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~ 315 (502)
.+..+++.+|+.. +++..|+++++.. ...+++.+..++. .|+.-
T Consensus 53 ~lL~AIv~sf~~n-~~i~~al~~vd~fs~~Y~I~i~~~~W~-~Ll~W 97 (126)
T PF12921_consen 53 RLLIAIVHSFGYN-GDIFSALKLVDFFSRKYPIPIPKEFWR-RLLEW 97 (126)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Confidence 9999999999999 8999999999998 7778776666665 45554
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.01 E-value=0.29 Score=42.15 Aligned_cols=84 Identities=18% Similarity=0.045 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD--GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
..|..+...+...|++++|...|++..+..-.++ ...+..+-..+.+.|++++|.+.++....... -+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3445555555556666666666666554322221 23444444555666666666666655444321 12334444444
Q ss_pred HHHhCCC
Q 010739 420 GYIKGGH 426 (502)
Q Consensus 420 ~~~~~g~ 426 (502)
.|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 5555444
No 160
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.96 E-value=0.064 Score=48.49 Aligned_cols=86 Identities=16% Similarity=0.059 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----------------hHHHHHHH
Q 010739 342 VVHERLLAMYIC-----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEG----------------SAVSRLLS 400 (502)
Q Consensus 342 ~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~----------------~~a~~l~~ 400 (502)
-+|-+++..|.. .+.++-...-++.|++-|+.-|..+|+.||..+-+..-. +-+.++++
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe 147 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE 147 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence 366666666654 356666777788899999999999999999877664322 23677888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739 401 RIEVMNSLCKKKTLSWLLRGYIKGGHI 427 (502)
Q Consensus 401 ~m~~~~~~p~~~~~~~li~~~~~~g~~ 427 (502)
.|...|+.||..+-..|+++|.+.|..
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhcccccc
Confidence 888888889888888888888888764
No 161
>PLN02789 farnesyltranstransferase
Probab=95.95 E-value=1.6 Score=41.70 Aligned_cols=139 Identities=12% Similarity=0.127 Sum_probs=84.6
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc-cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010739 123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER-GVGDVVDLLVDMDCVGLKPGFSMIEKVISLY 201 (502)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 201 (502)
+...++. +.|+.+.+.+.+...-+..+|+.--.++. ..+ .+++++.+++++.+..-+ +..+|+.--..+
T Consensus 47 l~~~e~s-erAL~lt~~aI~lnP~~ytaW~~R~~iL~--------~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 47 YASDERS-PRALDLTADVIRLNPGNYTVWHFRRLCLE--------ALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHcCCCC-HHHHHHHHHHHHHCchhHHHHHHHHHHHH--------HcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 3445667 79999999998877335556654433333 334 678999999888876433 555677655555
Q ss_pred HhcCcH--HHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010739 202 WEMEKK--ERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAV 279 (502)
Q Consensus 202 ~~~g~~--~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 279 (502)
.+.|+. +++..+++.+.+.+-+ |...++- -.|.+...|+++++++.++++.+.... |...|+.....+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~--------R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSH--------RQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHH--------HHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 566653 6778888888766511 1111111 233334458899999999998876433 344454444433
Q ss_pred Hh
Q 010739 280 VK 281 (502)
Q Consensus 280 ~~ 281 (502)
.+
T Consensus 187 ~~ 188 (320)
T PLN02789 187 TR 188 (320)
T ss_pred Hh
Confidence 33
No 162
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.94 E-value=0.072 Score=48.20 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------------CHHHH
Q 010739 372 KEADGDLYDIVLAICASQ-----NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG----------------HINDA 430 (502)
Q Consensus 372 ~~p~~~t~~~li~~~~~~-----~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A 430 (502)
-+-|-.+|-+.+..+... +.++-....++.|+++|+.-|..+|+.||..+=+.. +-+-+
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 344666666666655443 445666667799999999999999999999876653 23457
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739 431 AETLTKMLDLGLYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 431 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (502)
.+++++|...|+-||..+-..|++++.+
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 8999999999999999999999999965
No 163
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=1.7 Score=41.88 Aligned_cols=281 Identities=12% Similarity=0.073 Sum_probs=176.2
Q ss_pred HHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCH----HHHHHH
Q 010739 124 SQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGF----SMIEKV 197 (502)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~y~~l 197 (502)
+-.++. ..|...+-...... +-|+.....+-+.+. ..|+.++|+..|++-... .|+. ..|..|
T Consensus 207 ~~~~~h-s~a~~t~l~le~~~~lr~NvhLl~~lak~~~--------~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 207 MFNFKH-SDASQTFLMLHDNTTLRCNEHLMMALGKCLY--------YNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL 275 (564)
T ss_pred HHhccc-chhhhHHHHHHhhccCCccHHHHHHHhhhhh--------hhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH
Confidence 334555 36666665555444 558888888888888 899999999999986653 3332 223333
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-hHHHHHH
Q 010739 198 ISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-YSYLIAL 276 (502)
Q Consensus 198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li 276 (502)
+.+.|+.++..++...+-... .|+. .++-+...-..-..+++.|+.+-++-.+. .|+. ..|-.=-
T Consensus 276 ---L~~eg~~e~~~~L~~~Lf~~~------~~ta---~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG 341 (564)
T KOG1174|consen 276 ---LGQEGGCEQDSALMDYLFAKV------KYTA---SHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKG 341 (564)
T ss_pred ---HHhccCHhhHHHHHHHHHhhh------hcch---hhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhcc
Confidence 367889999888888776443 1111 01111122223357888888877765543 2322 2222112
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCC-CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH---HHHH
Q 010739 277 TAVVKELNEFGKALRKLKGYVRAGSI-AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL---LAMY 351 (502)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l---i~~~ 351 (502)
+.+... ++.++|.=-|+.-.. +. -+..+|. -|+..|.. |++.+|.-.-++....-.. +..+.+.+ +...
T Consensus 342 ~lL~~~-~R~~~A~IaFR~Aq~--Lap~rL~~Y~-GL~hsYLA~~~~kEA~~~An~~~~~~~~--sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 342 RLLIAL-ERHTQAVIAFRTAQM--LAPYRLEIYR-GLFHSYLAQKRFKEANALANWTIRLFQN--SARSLTLFGTLVLFP 415 (564)
T ss_pred HHHHhc-cchHHHHHHHHHHHh--cchhhHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHhhc--chhhhhhhcceeecc
Confidence 334444 678888766666532 33 3556776 69999988 9999998876553322111 11122111 1111
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010739 352 ICAGRGLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDA 430 (502)
Q Consensus 352 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 430 (502)
....-++|..+++.-. .+.|+-. ..+.+...|...|..+.+..+++.-.. ..||...-+.|-+.+...+.+.+|
T Consensus 416 -dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 416 -DPRMREKAKKFAEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred -CchhHHHHHHHHHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHH
Confidence 1223367888877644 4567644 344455788889999999999986653 358999999999999999999999
Q ss_pred HHHHHHHHHC
Q 010739 431 AETLTKMLDL 440 (502)
Q Consensus 431 ~~l~~~m~~~ 440 (502)
++.|...+..
T Consensus 491 m~~y~~ALr~ 500 (564)
T KOG1174|consen 491 MEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhc
Confidence 9999886653
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.81 E-value=0.26 Score=48.03 Aligned_cols=99 Identities=10% Similarity=-0.053 Sum_probs=49.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739 353 CAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAA 431 (502)
Q Consensus 353 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 431 (502)
..|++++|+.+|++..+. .| +...|..+-.++...|++++|...++...... ..+...|..+-.+|...|++++|.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 445555555555555432 22 23333334445555555555555555554433 123445555555666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 432 ETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 432 ~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
..|++.+. +.|+.......+..|
T Consensus 91 ~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 91 AALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHH
Confidence 66666554 234444444444444
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.092 Score=48.08 Aligned_cols=136 Identities=13% Similarity=0.013 Sum_probs=93.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739 350 MYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (502)
-+.+.+++++|+..|.+..+ +.|+ .+-|..=-.+|++.|.++.|++=.+.....+ .--..+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 35578899999999998885 5664 4445556689999999999887776665544 124668888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHH
Q 010739 429 DAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYI 491 (502)
Q Consensus 429 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~ 491 (502)
+|.+.|++.+ .+.|+-.+|..=|...-..+++......+...++.....+ ..|.++.++.
T Consensus 167 ~A~~aykKaL--eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig-~~Pd~~s~~~ 226 (304)
T KOG0553|consen 167 EAIEAYKKAL--ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIG-AFPDSRSMFN 226 (304)
T ss_pred HHHHHHHhhh--ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhcc-CCccchhhhc
Confidence 9999999865 4779999998888877544333332233333332222222 2245555554
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.74 E-value=1.7 Score=44.27 Aligned_cols=90 Identities=9% Similarity=0.045 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------CCCHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS---------LCKKKT 413 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~---------~p~~~~ 413 (502)
+...+-.-+.+...+.-|-++|..|-.. ..+++.....+++++|..+-+..-++-- .....-
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 4444444444566666777777776532 3455566667777777766654433210 011122
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 414 LSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
|.---++|.++|+-.+|..+++++....
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 3334567788888888888888765543
No 167
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=1.5 Score=39.45 Aligned_cols=190 Identities=13% Similarity=0.003 Sum_probs=124.5
Q ss_pred ccHHHHHHHHHHH---HHcC-CCCchhc-hHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChH
Q 010739 284 NEFGKALRKLKGY---VRAG-SIAELDG-KNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGL 358 (502)
Q Consensus 284 ~~~~~a~~~~~~m---~~~g-~~p~~~~-~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (502)
...++.++++.++ .+.| ..++..+ |....|.+.-.|+.+.|..+++.+...-....-+.-..+|. +-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchh
Confidence 4578888887777 2345 5555543 33344555555999999999988766552222222333322 33489999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLS-RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
+|+++++...+.. +-|..+|--=+...-..|.--+|.+-+. ....| .-|...|.-+-..|...|++++|.-.+++|
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999876 4466777666666666666556655554 44433 568999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739 438 LDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 438 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~ 480 (502)
.-.. +-+...|..+-+.+-- .....+++.+.+.+....+..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt-~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYT-QGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhC
Confidence 8643 1234444555554421 111446777777777665543
No 168
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.63 E-value=0.092 Score=43.81 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010739 380 DIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDRV 450 (502)
Q Consensus 380 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 450 (502)
..++..+...|+.+.|.++.+.+.... +.|...|..+|.+|...|+..+|.+.|+++.. .|+.|+..|-.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 444455666677777777777666655 33677777788888888888888777777643 47777776643
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.51 E-value=0.049 Score=38.45 Aligned_cols=60 Identities=20% Similarity=0.133 Sum_probs=36.0
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV 382 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 382 (502)
|++++|.+.|+.+........+ .+-.+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPE--ARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 6667777777666655443333 5556777777777777777777766643 3554444443
No 170
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.48 E-value=3.9 Score=42.68 Aligned_cols=279 Identities=12% Similarity=-0.004 Sum_probs=173.5
Q ss_pred cCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC----CHHHHHHHHHH
Q 010739 126 EGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP----GFSMIEKVISL 200 (502)
Q Consensus 126 ~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~y~~li~~ 200 (502)
.+.. +.++.-+......+ ..++.++..+...+.. +. ..++++++ .++....+.-++- |+..+-.++--
T Consensus 240 ~~~~-~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~----f~-~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~ 312 (799)
T KOG4162|consen 240 LSGP-KEAIKSYRRALLRSWSLDPLTKARLYKGFAL----FL-PKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLR 312 (799)
T ss_pred CCCc-hHHHHhhhHHhhcccccchhHHHHHhhcccc----cC-CCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 3445 56666665555555 5566666654443321 11 46777776 3333333332222 34444444444
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739 201 YWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV 280 (502)
Q Consensus 201 ~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 280 (502)
+.+.+++..+-.+|+. +.+.....|+++.+-+.|++.... +.-....|..+-..+.
T Consensus 313 k~r~~~~qnd~ai~d~-----------------------Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~s 368 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDH-----------------------LTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYS 368 (799)
T ss_pred HHHHhhhcchHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHH
Confidence 5555555555555554 577888899999999999987643 3334456677777777
Q ss_pred hccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH-Hhc--CcHHhHHHHHHHHHHcC---CCCchHhHHHHHHHHHHHc
Q 010739 281 KELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-YQS--DLLADGSRLSSWAIQEG---GSSLYGVVHERLLAMYICA 354 (502)
Q Consensus 281 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-~~~--g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~ 354 (502)
-. +.-..|..+++.-....-.|+..+-- .++.. |.+ +..++++.+-.+.+... ........|-.+--+|...
T Consensus 369 aa-g~~s~Av~ll~~~~~~~~~ps~~s~~-Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~ 446 (799)
T KOG4162|consen 369 AA-GSDSKAVNLLRESLKKSEQPSDISVL-LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ 446 (799)
T ss_pred Hh-ccchHHHHHHHhhcccccCCCcchHH-HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH
Confidence 77 67788888777663333234433321 22222 554 88888888777766622 2222334565555555541
Q ss_pred -----------CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739 355 -----------GRGLEAERQLWEMKLV-GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI 422 (502)
Q Consensus 355 -----------g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 422 (502)
....++++.+++..+. +-.|+..-|-++- ++..++++.|.+...+....+-.-+...|.-|.-.+.
T Consensus 447 A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS 524 (799)
T KOG4162|consen 447 ARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS 524 (799)
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 1234567777777654 4566666666655 4456799999999988888866778888888888889
Q ss_pred hCCCHHHHHHHHHHHHH
Q 010739 423 KGGHINDAAETLTKMLD 439 (502)
Q Consensus 423 ~~g~~~~A~~l~~~m~~ 439 (502)
..+++.+|+.+.+...+
T Consensus 525 a~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALE 541 (799)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 99999999999887654
No 171
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.46 E-value=1.2 Score=41.89 Aligned_cols=147 Identities=13% Similarity=0.047 Sum_probs=93.1
Q ss_pred HhHHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCCCchhchHHHH-HHHHhc-----CcHHhHHHHHHHHHHcC--CCCc
Q 010739 269 VYSYLIALTAVVKEL-NEFGKALRKLKGYVRAGSIAELDGKNLGL-IEKYQS-----DLLADGSRLSSWAIQEG--GSSL 339 (502)
Q Consensus 269 ~~ty~~li~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~l-i~~~~~-----g~~~~a~~~~~~m~~~~--~~~~ 339 (502)
..++.+++..-.... ..+.+...+++.|.+.|+.-+..+|-.++ |..... -....|..+++.|.+.. ....
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 345555555444421 34667777788889999998887764222 222311 34667888999999877 3344
Q ss_pred hHhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCH
Q 010739 340 YGVVHERLLAMYICAGR----GLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNE---GSAVSRLLSRIEVMNSLCKK 411 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~---~~~a~~l~~~m~~~~~~p~~ 411 (502)
+-+++.+|+.. ..++ .++++.+|+.+.+.|+..+.. -+-+-|-+++.... +..+.++++.+++.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 44788777765 3333 356778888888888876443 33333333333222 34677788999999988887
Q ss_pred HHHHHH
Q 010739 412 KTLSWL 417 (502)
Q Consensus 412 ~~~~~l 417 (502)
..|..+
T Consensus 218 ~~yp~l 223 (297)
T PF13170_consen 218 MHYPTL 223 (297)
T ss_pred ccccHH
Confidence 777664
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.36 E-value=0.77 Score=36.69 Aligned_cols=102 Identities=13% Similarity=-0.045 Sum_probs=53.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---H-HHHHHHHHHHHh
Q 010739 350 MYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK---K-KTLSWLLRGYIK 423 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~---~-~~~~~li~~~~~ 423 (502)
++-..|+.++|..+|++-.+.|...+. ..+..+-+.+...|++++|..+++...... |+ . .....+--++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 344466666777777666666655432 223333356666677777777776554322 22 1 111123335566
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739 424 GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR 457 (502)
Q Consensus 424 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 457 (502)
.|+.++|++.+-.... ++...|.--|..|.
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6777777776655443 22335555554443
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.32 E-value=0.66 Score=39.68 Aligned_cols=95 Identities=13% Similarity=-0.040 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA--DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
..|..+...+...|++++|+..|++.....-.| ...++..+-..+...|+.++|.+.++...... .....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 466667777777888888888888876543222 12466666677788888888888887665443 223444555555
Q ss_pred HHH-------hCCCHHHHHHHHHHH
Q 010739 420 GYI-------KGGHINDAAETLTKM 437 (502)
Q Consensus 420 ~~~-------~~g~~~~A~~l~~~m 437 (502)
.|. +.|++++|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555 677777666665543
No 174
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.27 E-value=2.7 Score=39.58 Aligned_cols=294 Identities=13% Similarity=0.005 Sum_probs=149.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHH--
Q 010739 121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVI-- 198 (502)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li-- 198 (502)
..+.-.|++ ..|+.-|....+. |+..|-++.+.....+ ..|+-..|+.=|....+ ++||-. .+-|
T Consensus 46 k~lla~~Q~-sDALt~yHaAve~---dp~~Y~aifrRaT~yL-----AmGksk~al~Dl~rVle--lKpDF~--~ARiQR 112 (504)
T KOG0624|consen 46 KELLARGQL-SDALTHYHAAVEG---DPNNYQAIFRRATVYL-----AMGKSKAALQDLSRVLE--LKPDFM--AARIQR 112 (504)
T ss_pred HHHHHhhhH-HHHHHHHHHHHcC---CchhHHHHHHHHHHHh-----hhcCCccchhhHHHHHh--cCccHH--HHHHHh
Confidence 334445667 4777777766554 3444444444222111 34555555554444443 456542 2222
Q ss_pred -HHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc-cCCCCchH-------HHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 199 -SLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG-QQGGPTGY-------LAWKMMVEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 199 -~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~-~~~~~~~~-------~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
..+.+.|.+++|..=|+...+.. |+..+-.- +....+.- -+.++.-+|+...|+++...+.+- ..-|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccchh
Confidence 34568888888888888887665 22111110 00000000 122223358888899888888764 33466
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCc--hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAE--LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE 345 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~--~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (502)
..|-.--.+|... |++..|+. +| ....+..| ...| -+-..+-. |+.+.++...++-.+-...... +|.
T Consensus 190 ~l~~~Rakc~i~~-~e~k~AI~---Dlk~askLs~DnTe~~y--kis~L~Y~vgd~~~sL~~iRECLKldpdHK~--Cf~ 261 (504)
T KOG0624|consen 190 SLRQARAKCYIAE-GEPKKAIH---DLKQASKLSQDNTEGHY--KISQLLYTVGDAENSLKEIRECLKLDPDHKL--CFP 261 (504)
T ss_pred HHHHHHHHHHHhc-CcHHHHHH---HHHHHHhccccchHHHH--HHHHHHHhhhhHHHHHHHHHHHHccCcchhh--HHH
Confidence 7777777888888 78888844 55 23333332 2333 35555666 8888888777665544322211 221
Q ss_pred H---H---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 010739 346 R---L---------LAMYICAGRGLEAERQLWEMKLVGKEADGDLYDI---VLAICASQNEGSAVSRLLSRIEVMNSLCK 410 (502)
Q Consensus 346 ~---l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---li~~~~~~~~~~~a~~l~~~m~~~~~~p~ 410 (502)
. + +......+++-++.+-.+...+..-.-..++||. +-.++...+.+.+|.+...+..... |+
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~ 339 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--ch
Confidence 1 1 1112224445555554444443322212233332 2234444555666665555554332 33
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 411 -KKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 411 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
..++.-=..+|.-...+|.|..=|+...+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 555555555666666666666666665443
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.02 E-value=5.1 Score=41.40 Aligned_cols=255 Identities=13% Similarity=0.081 Sum_probs=144.2
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH----------HhcCcHHHHHHHH
Q 010739 145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLY----------WEMEKKERAVLFV 214 (502)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~----------~~~g~~~~A~~l~ 214 (502)
.|.+..|..+...+. ..-.++-|...|-..... |.+.....|-..+ +--|++++|++++
T Consensus 689 nPHprLWrllAe~Al--------~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~y 757 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYAL--------FKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLY 757 (1189)
T ss_pred CCchHHHHHHHHHHH--------HHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhh
Confidence 488899999988666 677777777776544332 2221111111111 1248899999999
Q ss_pred HHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhccccHHHHH
Q 010739 215 KAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE----VYSYLIALTAVVKELNEFGKAL 290 (502)
Q Consensus 215 ~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~ty~~li~~~~~~~~~~~~a~ 290 (502)
-+|-++++ .+--..+-|+|-.+.++++. .|-..| ...|+.+-..++.. .++++|.
T Consensus 758 ld~drrDL-----------------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~-~~We~A~ 816 (1189)
T KOG2041|consen 758 LDADRRDL-----------------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEM-MEWEEAA 816 (1189)
T ss_pred hccchhhh-----------------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 99987772 23334445777666665542 222112 35677777777777 6788887
Q ss_pred HHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 291 RKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 291 ~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+.+.... + +- -.+.++-+ ..+++-+.+-. ..|. +....-.|-.++...|.-++|.+.|-+-.
T Consensus 817 ~yY~~~~------~--~e--~~~ecly~le~f~~LE~la~-----~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s- 879 (1189)
T KOG2041|consen 817 KYYSYCG------D--TE--NQIECLYRLELFGELEVLAR-----TLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS- 879 (1189)
T ss_pred HHHHhcc------c--hH--hHHHHHHHHHhhhhHHHHHH-----hcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc-
Confidence 7664431 1 11 24555444 44444444322 1233 22455667777777777777776664322
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 370 VGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL-----------CKKKTLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 370 ~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
.| -..+..|....++.+|.++-+......+. .+..+. --|..+-++|++=+|-+++.+|-
T Consensus 880 ---~p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 880 ---LP-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred ---Cc-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHh
Confidence 12 23456666666776666654322111100 011111 13556677888888888888886
Q ss_pred H----CCCCCCHHHHHHHHHHHH
Q 010739 439 D----LGLYPEYMDRVAVLQGLR 457 (502)
Q Consensus 439 ~----~g~~p~~~t~~~ll~~~~ 457 (502)
+ ++.+|-...-..++.|+.
T Consensus 951 e~e~~K~~p~lr~KklYVL~AlL 973 (1189)
T KOG2041|consen 951 EREQEKYVPYLRLKKLYVLGALL 973 (1189)
T ss_pred HHHhhccCCHHHHHHHHHHHHHH
Confidence 5 456666666556666664
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.99 E-value=6 Score=42.09 Aligned_cols=216 Identities=16% Similarity=0.149 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhh
Q 010739 85 EFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYF--SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSW 161 (502)
Q Consensus 85 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 161 (502)
.|..|....+.+. ..|+ ..|..++.++ .|.|+. ++|..+++.....+.-|..|..++-.++-
T Consensus 24 qfkkal~~~~kllkk~Pn------------~~~a~vLkaLsl~r~gk~-~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-- 88 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN------------ALYAKVLKALSLFRLGKG-DEALKLLEALYGLKGTDDLTLQFLQNVYR-- 88 (932)
T ss_pred HHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHHhcCc-hhHHHHHhhhccCCCCchHHHHHHHHHHH--
Confidence 3777777776655 4454 3367777765 577899 89999999887777448889999988887
Q ss_pred hhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHH
Q 010739 162 VKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLA 241 (502)
Q Consensus 162 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~ 241 (502)
+.++.++|..+++...+ .-|+......+..+|.|.+++.+-.+.==+|-. ..|...- ..
T Consensus 89 ------d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~y-----------yf 147 (932)
T KOG2053|consen 89 ------DLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAY-----------YF 147 (932)
T ss_pred ------HHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccc-----------hH
Confidence 89999999999998765 457788888888999999988654444333322 2233221 34
Q ss_pred HHHHH----h------C----cHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhccccHHHHHHHHH-HHHHcCCCCch
Q 010739 242 WKMMV----E------G----KYVDAIKLVIHLRESG-LKPEVYSYLIALTAVVKELNEFGKALRKLK-GYVRAGSIAEL 305 (502)
Q Consensus 242 ~~~~~----~------g----~~~~a~~~~~~m~~~g-~~p~~~ty~~li~~~~~~~~~~~~a~~~~~-~m~~~g~~p~~ 305 (502)
|+.+. . + -..-|.++++.+...+ -.-+..-.-.-+..+-.. ++.++|++++. ...+.-..-+.
T Consensus 148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~-~k~~eal~~l~~~la~~l~~~~~ 226 (932)
T KOG2053|consen 148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ-GKYQEALEFLAITLAEKLTSANL 226 (932)
T ss_pred HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhccccch
Confidence 44443 1 1 2345666777776653 111111111222233334 67999998883 33322222222
Q ss_pred hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCC
Q 010739 306 DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSS 338 (502)
Q Consensus 306 ~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~ 338 (502)
..-+ .-++.+.+ +++.+..++-.++...+...
T Consensus 227 ~l~~-~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 227 YLEN-KKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHH-HHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 2222 34566777 89999998888888777544
No 177
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.98 E-value=0.72 Score=38.34 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=35.4
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL-----VGKEADGDL 378 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 378 (502)
++..+.. |+.++|.+....+....... ...|-.+|.+|...|+..+|.+.|+++.. .|+.|+..|
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~dP~~--E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALDPYD--EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4444455 77777777666655554332 34677777777777777777777766542 266665544
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.94 E-value=0.33 Score=47.28 Aligned_cols=91 Identities=7% Similarity=-0.146 Sum_probs=74.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010739 121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL 200 (502)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 200 (502)
..+...|++ +.|++.|+...+...-+...|..+-.++. ..|++++|+..++...+.. +.+...|..+-.+
T Consensus 10 ~~a~~~~~~-~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~--------~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~ 79 (356)
T PLN03088 10 KEAFVDDDF-ALAVDLYTQAIDLDPNNAELYADRAQANI--------KLGNFTEAVADANKAIELD-PSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 445567889 89999999999887446677766666566 8999999999999998753 2367789999999
Q ss_pred HHhcCcHHHHHHHHHHHHHcC
Q 010739 201 YWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 201 ~~~~g~~~~A~~l~~~m~~~~ 221 (502)
|.+.|++++|...|++..+.+
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999988755
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.88 E-value=0.52 Score=40.33 Aligned_cols=61 Identities=13% Similarity=-0.044 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hhchHHHHHHHHhc-CcHHhHHHHHHHHHH
Q 010739 271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE--LDGKNLGLIEKYQS-DLLADGSRLSSWAIQ 333 (502)
Q Consensus 271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~~li~~~~~-g~~~~a~~~~~~m~~ 333 (502)
.|..+...+... +++++|+..++......-.+. ..++. .+-..|.. |+.++|.+.+++...
T Consensus 37 ~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~~~~~~~~~~-~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSE-GEYAEALQNYYEAMRLEIDPYDRSYILY-NIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhccccchhhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444 566666666655533321111 11222 23333444 555555555555444
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.82 E-value=2 Score=35.85 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=63.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDI-VLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
+-..+...|++++|..+|+-... +.|....|.- |=.+|-..|++++|...+........ -|...+-.+-.++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 34455668888888888887764 4555444433 33555666888888888887776663 46777777888888888
Q ss_pred CHHHHHHHHHHHHH
Q 010739 426 HINDAAETLTKMLD 439 (502)
Q Consensus 426 ~~~~A~~l~~~m~~ 439 (502)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888887554
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.79 E-value=1.1 Score=38.41 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739 271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE--LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL 347 (502)
Q Consensus 271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 347 (502)
.|..+-..+... |++++|...+++..+..-.+. ...+. .+...|.+ |++++|.+.+.+....... +...+..+
T Consensus 37 ~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 112 (172)
T PRK02603 37 VYYRDGMSAQAD-GEYAEALENYEEALKLEEDPNDRSYILY-NMGIIYASNGEHDKALEYYHQALELNPK--QPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhccchHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHH
Confidence 445555555555 677777777776644332221 12222 34445566 7777777777666554322 23355555
Q ss_pred HHHHHHcCCh
Q 010739 348 LAMYICAGRG 357 (502)
Q Consensus 348 i~~~~~~g~~ 357 (502)
...|...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 5556665553
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.75 E-value=1.6 Score=42.56 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL 348 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 348 (502)
..|...|++.-+. ..++.|..+|-+..+.| +.+++.+++ ++|..++.|+..-|.++|+--... .++ +.+--+-.+
T Consensus 398 ~v~C~~~N~v~r~-~Gl~aaR~~F~k~rk~~~~~h~vyi~~-A~~E~~~~~d~~ta~~ifelGl~~-f~d-~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRK-RGLEAARKLFIKLRKEGIVGHHVYIYC-AFIEYYATGDRATAYNIFELGLLK-FPD-STLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCCcceeeeH-HHHHHHhcCCcchHHHHHHHHHHh-CCC-chHHHHHHH
Confidence 4566677777777 56888888888887777 567788887 788888888888888888642211 122 222334455
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739 349 AMYICAGRGLEAERQLWEMKLVGKEAD--GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI 422 (502)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 422 (502)
.-+...++-+.|..+|+.-.+. +.-+ ...|..+|+.-..-|++..+..+-+.|.+. .|...+.......|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 6667778888888888843321 1112 356888888878888887777766666543 344444444444444
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.69 E-value=6.2 Score=40.81 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 010739 412 KTLSWLLRGYIKGGHINDAAETLTKMLD-LGLYPEYMDRVAVLQGLR 457 (502)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~ 457 (502)
.+|-.|.+--...|.++.|+..--.+.+ ..+-|....|..+.-+-|
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAAC 1068 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHh
Confidence 3444455666677888888876555544 246677777776655544
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.42 E-value=0.15 Score=35.84 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=49.7
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 010739 124 SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVI 198 (502)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li 198 (502)
.+.|++ +.|+++|+.+....+-+...+-.+..++. +.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYL--------KQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHH--------HTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 467888 89999999999887447777778888788 999999999999988774 45545555544
No 185
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.39 E-value=2.4 Score=34.85 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=68.7
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
.+|..+.+ +.......+++.+...+.. +...+|.++..|++.+. .+.++.+.. ..+.+....++..|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~--~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCcc--chhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 35666665 6667777777766666532 33377777777776532 334444432 12334444566777776
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739 390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG-GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (502)
+.++++..++..+.. |...+..+... ++++.|.+++.+ .-+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 766666666655432 12223333333 667777776665 1245566666666543
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.33 E-value=0.2 Score=34.94 Aligned_cols=52 Identities=12% Similarity=-0.135 Sum_probs=33.3
Q ss_pred Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+.+ |++++|.+.|++.+..... +...|..+-..+.+.|++++|...|++..+
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444 7777777777766665522 344666677777777777777777777653
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.28 E-value=1.8 Score=36.11 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=21.7
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY 296 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m 296 (502)
...|++++|.++|+-...- .|....|-.=+.++++.-+++++|+..+...
T Consensus 46 y~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3345555555555544432 3333333333333333324455555544444
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.26 E-value=7.4 Score=39.91 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHcCCChHHHHHH---HHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC
Q 010739 115 ELQLVLVYFSQEGRDSWCALEV---FEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG 190 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~---~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 190 (502)
+++..-.+|.+.++. .-+++ +++|+++| .|+......... -.|++++|.++|. +.|..
T Consensus 600 ~f~~ARkAY~rVRdl--~~L~li~EL~~~k~rge~P~~iLlA~~~A-----------y~gKF~EAAklFk---~~G~e-- 661 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDL--RYLELISELEERKKRGETPNDLLLADVFA-----------YQGKFHEAAKLFK---RSGHE-- 661 (1081)
T ss_pred hhHHHHHHHHHHhcc--HHHHHHHHHHHHHhcCCCchHHHHHHHHH-----------hhhhHHHHHHHHH---HcCch--
Confidence 467777788877766 33343 56677788 687765543332 5688999998887 45543
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHH-------HHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHH----
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKA-------VLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIH---- 259 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~-------m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~---- 259 (502)
|..+.+|...+.++.|.+++.. |.-+.-. .-.|+.+ .|-...--...+|+.++|..+.-+
T Consensus 662 ----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA--~WAr~~k---ePkaAAEmLiSaGe~~KAi~i~~d~gW~ 732 (1081)
T KOG1538|consen 662 ----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA--DWARNIK---EPKAAAEMLISAGEHVKAIEICGDHGWV 732 (1081)
T ss_pred ----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH--HHhhhcC---CcHHHHHHhhcccchhhhhhhhhcccHH
Confidence 3455666666666666665421 1100000 0000000 000112222234666666654321
Q ss_pred -H-HHcCCCC---CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHH
Q 010739 260 -L-RESGLKP---EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSS 329 (502)
Q Consensus 260 -m-~~~g~~p---~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~ 329 (502)
| .+-+-+. +..+...+-.-+.+. ..+.-|-++|..|-+. ..++.+... +++++|..+-+
T Consensus 733 d~lidI~rkld~~ere~l~~~a~ylk~l-~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 733 DMLIDIARKLDKAEREPLLLCATYLKKL-DSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HHHHHHHhhcchhhhhHHHHHHHHHhhc-cccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhh
Confidence 1 1112222 223333333334444 5566777777766221 146677667 88888887653
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.08 E-value=0.33 Score=33.79 Aligned_cols=53 Identities=4% Similarity=0.025 Sum_probs=46.2
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
+.|++++|...|++..+.. +-+...+..+-.++.+.|++++|...|++..+..
T Consensus 9 ~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7899999999999999875 3377889999999999999999999999987654
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=1.6 Score=39.47 Aligned_cols=64 Identities=8% Similarity=-0.088 Sum_probs=29.4
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG 231 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~ 231 (502)
..+.+.-...++.+..+..-+-+......|.+.-.+.||.+.|...|++.++..-+.|..+++.
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 3444444444444444443333444444455555555555555555554444333444444443
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.88 E-value=6.1 Score=40.61 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010739 375 DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDR 449 (502)
Q Consensus 375 ~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 449 (502)
+...|.++--.....|++++|...++.....+ |+...|..+-..+...|+.++|.+.+++.... .|...||
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 34555555444445677777777777766665 56667777777777888888888877776543 3444444
No 192
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.83 E-value=2.5 Score=34.77 Aligned_cols=127 Identities=17% Similarity=0.099 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
...++..+.+.+.. .....+++++...+..+...+|.++..++ +. +-......++. ..+.....
T Consensus 10 ~~~vv~~~~~~~~~-~~l~~yLe~~~~~~~~~~~~~~~li~ly~--------~~-~~~~ll~~l~~------~~~~yd~~ 73 (140)
T smart00299 10 VSEVVELFEKRNLL-EELIPYLESALKLNSENPALQTKLIELYA--------KY-DPQKEIERLDN------KSNHYDIE 73 (140)
T ss_pred HHHHHHHHHhCCcH-HHHHHHHHHHHccCccchhHHHHHHHHHH--------HH-CHHHHHHHHHh------ccccCCHH
Confidence 56777777777777 78888888887776557778888888776 33 23344444442 12333344
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh-CcHHHHHHHHHHHHHcCCCCCHhHHHH
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE-GKYVDAIKLVIHLRESGLKPEVYSYLI 274 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~ty~~ 274 (502)
.+++.|-+.+-++++.-++..+.... -.+..++.. ++++.|.+++.+- -+...|..
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~~~~~-----------------~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~ 130 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKDGNFK-----------------DAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAE 130 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhhcCHH-----------------HHHHHHHHcccCHHHHHHHHHhC------CCHHHHHH
Confidence 57777778888888888877764322 023333333 6777777776641 24556666
Q ss_pred HHHHHHh
Q 010739 275 ALTAVVK 281 (502)
Q Consensus 275 li~~~~~ 281 (502)
++..+..
T Consensus 131 ~~~~~l~ 137 (140)
T smart00299 131 VLKALLD 137 (140)
T ss_pred HHHHHHc
Confidence 6665543
No 193
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.74 E-value=6 Score=37.05 Aligned_cols=168 Identities=14% Similarity=0.003 Sum_probs=88.0
Q ss_pred hhccHhhHHHHHHHHhhCC--CCCCH------HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchH
Q 010739 168 EERGVGDVVDLLVDMDCVG--LKPGF------SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGY 239 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g--~~p~~------~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~ 239 (502)
+.|+++.|..++.+....- ..|+. ..||.-...+.+..+++.|..++++-.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~--------------------- 63 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAY--------------------- 63 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH---------------------
Confidence 7788888888888776643 22322 334444444444436666666655432
Q ss_pred HHHHHHHhCcHHHHHHHHHH-HHHcCCCCCH-----hHHHHHHHHHHhcc--ccHHHHHHHHHHH-HHcCCCCchhchHH
Q 010739 240 LAWKMMVEGKYVDAIKLVIH-LRESGLKPEV-----YSYLIALTAVVKEL--NEFGKALRKLKGY-VRAGSIAELDGKNL 310 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~-m~~~g~~p~~-----~ty~~li~~~~~~~--~~~~~a~~~~~~m-~~~g~~p~~~~~~~ 310 (502)
++++. -......|+. .++..++.++...+ ...++|.++++.+ .+.|-.|.....
T Consensus 64 ---------------~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L-- 126 (278)
T PF08631_consen 64 ---------------DILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLL-- 126 (278)
T ss_pred ---------------HHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHH--
Confidence 22211 0001122222 34455556665552 2355666666666 344444444432
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCH
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC--AGRGLEAERQLWEMKLVGKEADG 376 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~ 376 (502)
-+..+.+ ++.+++.+++.+|+..-..... .+..++..+-+ ......|...+..+....+.|..
T Consensus 127 -~l~il~~~~~~~~~~~~L~~mi~~~~~~e~--~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 127 -KLEILLKSFDEEEYEEILMRMIRSVDHSES--NFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred -HHHHHhccCChhHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3444555 7778888888777776542222 45544544422 23334566666666666555554
No 194
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.72 E-value=4 Score=41.42 Aligned_cols=151 Identities=11% Similarity=0.049 Sum_probs=101.0
Q ss_pred hCcHHHHHHHHHHHHHc-CCCCCH-----hHHHHHHHHHHhc---cccHHHHHHHHHHHHHcCCCCchhchHHHHHHH--
Q 010739 247 EGKYVDAIKLVIHLRES-GLKPEV-----YSYLIALTAVVKE---LNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-- 315 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~-g~~p~~-----~ty~~li~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-- 315 (502)
.|+-+.+++++.+-.+. ++.-.. -+|..++..++.. +...+.|.+++..+.+. -|+...+. +..+
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl--~~~gR~ 276 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL--FFEGRL 276 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH--HHHHHH
Confidence 58999999988876543 333222 3566667666665 36789999999988554 47887774 4444
Q ss_pred Hhc-CcHHhHHHHHHHHHH--cCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC
Q 010739 316 YQS-DLLADGSRLSSWAIQ--EGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLA-ICASQNE 391 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~~~ 391 (502)
+.. |++++|.+.|++... ...+......+--+.-.+.-.+++++|.+.|.++.+.. .....+|.-+.. ++...|+
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhcc
Confidence 555 999999999997654 22444455566666667888999999999999998752 223333333332 3344566
Q ss_pred h-------hHHHHHHHHH
Q 010739 392 G-------SAVSRLLSRI 402 (502)
Q Consensus 392 ~-------~~a~~l~~~m 402 (502)
. ++|.+++...
T Consensus 356 ~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKV 373 (468)
T ss_pred chhhhhhHHHHHHHHHHH
Confidence 6 6777777544
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.69 E-value=9.6 Score=39.21 Aligned_cols=146 Identities=12% Similarity=-0.019 Sum_probs=81.0
Q ss_pred CCCCCHhHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc----C-----cHHhHHHHHHH
Q 010739 264 GLKPEVYSYLIALTAVVKE----LNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS----D-----LLADGSRLSSW 330 (502)
Q Consensus 264 g~~p~~~ty~~li~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~----g-----~~~~a~~~~~~ 330 (502)
+...|...|...+.|.... ..+...|..+|++.++. +|+-......+.-+|.. + ++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3445667788777775543 13466777777776443 45543211112111211 1 12223333332
Q ss_pred HHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 010739 331 AIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK 410 (502)
Q Consensus 331 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~ 410 (502)
.......+.+...|.++-......|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.++.....+ |.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence 22222222333566666555556788888888888877654 677777777778888888888887776665443 44
Q ss_pred HHHHH
Q 010739 411 KKTLS 415 (502)
Q Consensus 411 ~~~~~ 415 (502)
..||.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 44543
No 196
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.64 E-value=2.3 Score=43.17 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-Ch------HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC
Q 010739 113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRV-DN------ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV 185 (502)
Q Consensus 113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~------~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 185 (502)
|..+..+++.+.=.|+- +.+++.+..-.+.+.. .+ -.|+.++..++..-. ....++.|.++++.+.+.
T Consensus 188 Pp~~~kll~~vGF~gdR-~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~----~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDR-ELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG----EDVPLEEAEELLEEMLKR 262 (468)
T ss_pred CHHHHHHHhhcCcCCcH-HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc----cCCCHHHHHHHHHHHHHh
Confidence 66788888888888888 7999988887665422 22 256666665653200 367899999999999874
Q ss_pred CCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHcCCC-CC--CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHH
Q 010739 186 GLKPGFSMIEKVI-SLYWEMEKKERAVLFVKAVLSRGIA-YA--EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLR 261 (502)
Q Consensus 186 g~~p~~~~y~~li-~~~~~~g~~~~A~~l~~~m~~~~~~-p~--~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~ 261 (502)
-|+...|.-.- +.+...|++++|.+.|++....... +. ...|-- +.|+++..++|++|.+.|..+.
T Consensus 263 --yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E--------l~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 263 --YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE--------LAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred --CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH--------HHHHHHHHchHHHHHHHHHHHH
Confidence 46776665444 4456789999999999976532111 11 111111 6888888999999999999998
Q ss_pred Hc-CCCCCHhHHHHHHHHHHhccccH-------HHHHHHHHHH
Q 010739 262 ES-GLKPEVYSYLIALTAVVKELNEF-------GKALRKLKGY 296 (502)
Q Consensus 262 ~~-g~~p~~~ty~~li~~~~~~~~~~-------~~a~~~~~~m 296 (502)
+. .. +..+|.-+..+|.-.-++. ++|.++|.+.
T Consensus 333 ~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 75 23 3344444444443332445 6666666655
No 197
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.15 E-value=3.8 Score=32.98 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=68.4
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHH--HHHHHHhc-CcH
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNL--GLIEKYQS-DLL 321 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--~li~~~~~-g~~ 321 (502)
...|.+++..++..+.... -+..-||.+|.-.... -+-+-..+.++.. |---|.....+ .++..|.+ |..
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDa-a~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDA-ADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH---HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchh-hchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcch
Confidence 4578889999988887765 3556677777766666 4555554544443 22222222110 23333433 211
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR 401 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~ 401 (502)
....+..+..+.+.|+-++-.+++.++.. .-++++...-.+-.+|.+.|+..++.+++.+
T Consensus 86 -------------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 86 -------------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp --------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 12344455666666666666666666654 2345555555555666666666666666666
Q ss_pred HHHcCC
Q 010739 402 IEVMNS 407 (502)
Q Consensus 402 m~~~~~ 407 (502)
.-+.|.
T Consensus 146 ACekG~ 151 (161)
T PF09205_consen 146 ACEKGL 151 (161)
T ss_dssp HHHTT-
T ss_pred HHHhch
Confidence 555553
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.08 E-value=3.8 Score=32.75 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhccccHHHHHHHHHHHH
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEV--YSYLIALTAVVKELNEFGKALRKLKGYV 297 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~li~~~~~~~~~~~~a~~~~~~m~ 297 (502)
.|.+-..|+.++|+.+|++-...|..... ..+-.+-..+... |++++|..++++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~ 65 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEAL 65 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 44444567888888888877777765542 3444455556666 67777777777664
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.04 E-value=0.65 Score=32.65 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHc
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME-KKERAVLFVKAVLSR 220 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g-~~~~A~~l~~~m~~~ 220 (502)
+..+|..+-..+. ..|++++|+..|++..+.. +-+...|..+-.+|.+.| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~--------~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYF--------QQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHH--------HTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3456676667677 8999999999999998864 336788999999999999 799999999887653
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.01 E-value=7.1 Score=35.71 Aligned_cols=81 Identities=7% Similarity=-0.046 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY 272 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 272 (502)
.|..-. .+.+.|++++|.+.|+++....-.+.... .. .-.+...+...+++++|...|++..+.--.-...-|
T Consensus 35 ~Y~~A~-~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~-~a-----~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 35 IYATAQ-QKLQDGNWKQAITQLEALDNRYPFGPYSQ-QV-----QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHH-HHHHCCCHHHHHHHHHHHHHhCCCChHHH-HH-----HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 444333 34567888888888888876542211000 00 001345556678888888888888766222222344
Q ss_pred HHHHHHHH
Q 010739 273 LIALTAVV 280 (502)
Q Consensus 273 ~~li~~~~ 280 (502)
...+.|.+
T Consensus 108 a~Y~~g~~ 115 (243)
T PRK10866 108 VLYMRGLT 115 (243)
T ss_pred HHHHHHHh
Confidence 44555544
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.82 E-value=14 Score=38.66 Aligned_cols=84 Identities=14% Similarity=0.165 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI 422 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 422 (502)
+-+--+.-+...|+-.+|.++-.+.+ -||-..|..=+.+++..+++++.+++-+.++ ...-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 33334444555666666666555443 4666666666666666666666433322222 1334555666666
Q ss_pred hCCCHHHHHHHHHH
Q 010739 423 KGGHINDAAETLTK 436 (502)
Q Consensus 423 ~~g~~~~A~~l~~~ 436 (502)
+.|+.++|.+.+-+
T Consensus 756 ~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPR 769 (829)
T ss_pred hcccHHHHhhhhhc
Confidence 67777777666665
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.80 E-value=0.81 Score=32.15 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=21.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 010739 384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG-HINDAAETLTK 436 (502)
Q Consensus 384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~ 436 (502)
..+...|++++|...|+...... .-+...|..+-.+|.+.| ++++|.+.+++
T Consensus 11 ~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 11 QIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33334444444444443333332 113333444444444444 34444444444
No 203
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.76 E-value=17 Score=39.46 Aligned_cols=122 Identities=12% Similarity=-0.041 Sum_probs=59.0
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH--HHH
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLA--ICA 387 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~--~~~ 387 (502)
|-.-|+. .++..|.+.|....+- .+.|...+......|+....+++|+.+.-.-- ...| -...+|.+-. .+-
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~--qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAA--QKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHh--hhchHHHHHhhhhhcccccc
Confidence 4444555 5666666666544332 23334466666666666666776666622111 1111 1112222221 222
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 388 SQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 388 ~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
..++...+..-|+...... +-|...|..+..+|.+.|++..|.++|.+..
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 3344444443333332222 1245555556777777777777777776543
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.69 E-value=5.7 Score=36.07 Aligned_cols=147 Identities=16% Similarity=0.040 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHH
Q 010739 173 GDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVD 252 (502)
Q Consensus 173 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~ 252 (502)
+..+++|++=. ..+-+.+++++.-.|.+.-...++++..+++-..+..--.. +..-.+..|+.+.
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~--------Lgr~~MQ~GD~k~ 230 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG--------LGRISMQIGDIKT 230 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH--------HHHHHHhcccHHH
Confidence 55566655432 23566777888888888888888888887663333322222 5556677999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHH---Hhcc-ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHH
Q 010739 253 AIKLVIHLRESGLKPEVYSYLIALTAV---VKEL-NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLS 328 (502)
Q Consensus 253 a~~~~~~m~~~g~~p~~~ty~~li~~~---~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~ 328 (502)
|...|++..+..-+.|..+++.++.-- .-.| +++.+|...+.+.....-.--...-|-+|+-+|. |+..+|.+..
T Consensus 231 a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-g~l~DAiK~~ 309 (366)
T KOG2796|consen 231 AEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL-GKLKDALKQL 309 (366)
T ss_pred HHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH-HHHHHHHHHH
Confidence 999999998887777887777765432 2223 7888888878777433211111111224444443 7999999999
Q ss_pred HHHHHcC
Q 010739 329 SWAIQEG 335 (502)
Q Consensus 329 ~~m~~~~ 335 (502)
+.|++.-
T Consensus 310 e~~~~~~ 316 (366)
T KOG2796|consen 310 EAMVQQD 316 (366)
T ss_pred HHHhccC
Confidence 9888765
No 205
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=92.34 E-value=10 Score=35.87 Aligned_cols=203 Identities=11% Similarity=0.036 Sum_probs=95.2
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010739 123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYW 202 (502)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 202 (502)
+.-.|+. ..|++....+.+...=|...|..-..++. ..|....|+.=++..-+..- -|..++--+-..+.
T Consensus 165 ~~~~GD~-~~ai~~i~~llEi~~Wda~l~~~Rakc~i--------~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 165 ASGSGDC-QNAIEMITHLLEIQPWDASLRQARAKCYI--------AEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLY 234 (504)
T ss_pred HhcCCch-hhHHHHHHHHHhcCcchhHHHHHHHHHHH--------hcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHH
Confidence 3344555 45555555555444225555555555444 55555555554444333211 23334444445555
Q ss_pred hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739 203 EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE 282 (502)
Q Consensus 203 ~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 282 (502)
..|+.+.++....+-...+ ||.. .++.+. ..+.+..+.++.|++. ...
T Consensus 235 ~vgd~~~sL~~iRECLKld--pdHK------------~Cf~~Y--KklkKv~K~les~e~~----------------ie~ 282 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLD--PDHK------------LCFPFY--KKLKKVVKSLESAEQA----------------IEE 282 (504)
T ss_pred hhhhHHHHHHHHHHHHccC--cchh------------hHHHHH--HHHHHHHHHHHHHHHH----------------Hhh
Confidence 5566555555555444332 3310 122211 1222333333333221 122
Q ss_pred cccHHHHHHHHHHHHHcCCCCchhchHH--HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHH
Q 010739 283 LNEFGKALRKLKGYVRAGSIAELDGKNL--GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLE 359 (502)
Q Consensus 283 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~--~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 359 (502)
+++.++++--+...+..-+...+.++. .+-..|.. |.+.+|.+...+..+.. +.|+.++.---.+|.-...++.
T Consensus 283 -~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 283 -KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred -hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHH
Confidence 345555554444433322212222321 12223444 78888887776655543 2234466555666666677777
Q ss_pred HHHHHHHHHHC
Q 010739 360 AERQLWEMKLV 370 (502)
Q Consensus 360 A~~l~~~m~~~ 370 (502)
|+.=|+...+.
T Consensus 360 AI~dye~A~e~ 370 (504)
T KOG0624|consen 360 AIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhc
Confidence 77777766543
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.34 E-value=3.6 Score=38.09 Aligned_cols=96 Identities=9% Similarity=-0.000 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CC---CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCC-CchHhH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGYVRAG-SI---AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGS-SLYGVV 343 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~---p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~-~~~~~~ 343 (502)
..|...+..+.+. +++++|...|+.+++.- -. |+.. | .+-..|.. |++++|...|+.++..... +.....
T Consensus 144 ~~Y~~A~~l~~~~-~~y~~Ai~af~~fl~~yP~s~~a~~A~-y--~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDK-SRQDDAIVAFQNFVKKYPDSTYQPNAN-Y--WLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCcchHHHH-H--HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3455555444555 56777777777764331 11 1221 2 24445555 7777777777776654311 111124
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 344 HERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+-.+...+...|+.++|..+|++..+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445556667777777777776654
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.33 E-value=4.7 Score=39.45 Aligned_cols=137 Identities=11% Similarity=0.039 Sum_probs=102.2
Q ss_pred hCcHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739 247 EGKYVDAIKLVIHLRESG-LKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g-~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a 324 (502)
...++.|..+|-+..+.| +.+++..|+++|.-+|.. +...|.++|+-=... -||...|-..-+..... ++-+.|
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~--d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG--DRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC--CcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHH
Confidence 467899999999999998 789999999999999987 788998888643222 35555554456667777 999999
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
..+|+..+..-....--..|..+|.-=..-|++..+..+=++|.+ +-|-..+-....+-|+-.
T Consensus 486 raLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 486 RALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 999985544331111124899999988889999999999888875 456666666666655543
No 208
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.27 E-value=5.1 Score=32.27 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010739 376 GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGL 442 (502)
Q Consensus 376 ~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 442 (502)
..-+...++.....|.-++..++..++.. +-.++....-.+-.+|.+-|+..++.+++.+.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556666666766666666666554 3355666666677777777777777777777666664
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=4.9 Score=37.24 Aligned_cols=116 Identities=20% Similarity=0.157 Sum_probs=82.7
Q ss_pred CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010739 338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-GKEADGDL-YDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLS 415 (502)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t-~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~ 415 (502)
+.|...|-.|-..|.+.|+++.|..-|..-.+. |-+|+... |...+-.-+......++.++|+++.... .-|+..-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 346679999999999999999999999987653 44444332 2222222222334458899999888766 33677777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
-|-..+...|++.+|...|+.|.+.. |....+..+|+.-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~~ 270 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHHH
Confidence 78889999999999999999999864 4444555555554
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.23 E-value=12 Score=36.39 Aligned_cols=80 Identities=9% Similarity=0.120 Sum_probs=54.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH--H---hCcHHHHHHHHHHHHHcCCCCCHh
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM--V---EGKYVDAIKLVIHLRESGLKPEVY 270 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~--~---~g~~~~a~~~~~~m~~~g~~p~~~ 270 (502)
.++-.|....+++...++.+.|...--..-..+-+. ...++++ + .|+.++|++++.......-.++..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i-------~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNI-------KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHH-------HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 455569999999999999999976521111111110 1233333 3 599999999999977777778888
Q ss_pred HHHHHHHHHHhc
Q 010739 271 SYLIALTAVVKE 282 (502)
Q Consensus 271 ty~~li~~~~~~ 282 (502)
||..+-..|-..
T Consensus 219 ~~gL~GRIyKD~ 230 (374)
T PF13281_consen 219 TLGLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHHHHH
Confidence 888777666554
No 211
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.22 E-value=11 Score=37.73 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=103.0
Q ss_pred HHHHHHhCcHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739 241 AWKMMVEGKYVDAIKLVIHLR-ESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS- 318 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~- 318 (502)
....+..|+++++.++.+.=. -..+ | ..-.+.++.-+-+. |-.+.|+++..+- . .--+...+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~-G~~e~AL~~~~D~---------~----~rFeLAl~l 331 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKK-GYPELALQFVTDP---------D----HRFELALQL 331 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHT-T-HHHHHHHSS-H---------H----HHHHHHHHC
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHC-CCHHHHHhhcCCh---------H----HHhHHHHhc
Confidence 334455789999887775111 1112 2 44477888888888 7889998755332 1 12334455
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|+++.|.++- .... +...|..|-....+.|+++-|++.|.+.. -|..|+-.|...|+.+...++
T Consensus 332 g~L~~A~~~a-----~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 332 GNLDIALEIA-----KELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp T-HHHHHHHC-----CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred CCHHHHHHHH-----HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHH
Confidence 8999998853 2222 44599999999999999999999998765 367777788888999888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
.+.....| -+|....++.-.|++++..+++.+
T Consensus 396 ~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 396 AKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87777766 366767777778999998888775
No 212
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.00 E-value=2 Score=39.60 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=61.4
Q ss_pred HHHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcH
Q 010739 243 KMMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLL 321 (502)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~ 321 (502)
.++.++++++|+..|.+-... .| |.+-|..=-.+|++. |.++.|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~L-g~~~~AVk------------------------------ 136 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKL-GEYEDAVK------------------------------ 136 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHh-cchHHHHH------------------------------
Confidence 445566666666666665543 33 334444455566666 55666633
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI 385 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 385 (502)
-.+..+.. .+....+|..|-.+|...|++++|.+-|.+-. .+.|+..+|-.=|..
T Consensus 137 -----Dce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~aykKaL--eldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 137 -----DCESALSI--DPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL--ELDPDNESYKSNLKI 191 (304)
T ss_pred -----HHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh--ccCCCcHHHHHHHHH
Confidence 22221111 11122488888888888999999998888766 478888887766643
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.95 E-value=1.4 Score=31.38 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 385 ICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 385 ~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
.+.+.++++.|.++++.+...+. .+...+...-..|.+.|++++|.+.|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44555566666666655555441 14444444555566666666666666666543
No 214
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.93 E-value=7.1 Score=33.16 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc--CcHHhHHHHHHHH
Q 010739 254 IKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS--DLLADGSRLSSWA 331 (502)
Q Consensus 254 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~--g~~~~a~~~~~~m 331 (502)
.++++.+...|+.|+...|..+|+.+.+. +.... ++.++..++-+|.......|+..-.+ .-..-|...+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~-~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRN-GQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 56777777889999999999999999999 65443 56677888888887654333333222 2233333333321
Q ss_pred HHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739 332 IQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR 401 (502)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~ 401 (502)
. ..+..++..+...|++-+|.++.+..... +......++.+-...++...-..+++-
T Consensus 89 ~---------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 89 G---------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred h---------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 15666777888888888888888765321 112224455565555555544444433
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.80 E-value=3.4 Score=38.25 Aligned_cols=96 Identities=10% Similarity=0.029 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCC
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVD----NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKP 189 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p 189 (502)
|...+..+.+.|++ +.|...|+.+.+.. |+ +..+--+-..+. ..|++++|...|+.+.+.- -+.
T Consensus 146 Y~~A~~l~~~~~~y-~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~--------~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 146 YNAAIALVQDKSRQ-DDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNY--------NKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHCCCCcc
Confidence 88888777778999 89999999999877 32 234444444444 7899999999999998641 111
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
....+-.+...|.+.|+.++|.++|++..+..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 23445556667789999999999999987664
No 216
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.68 E-value=10 Score=34.61 Aligned_cols=170 Identities=10% Similarity=-0.031 Sum_probs=95.4
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHH---HHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCCccccccCCCCchHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMI---EKVISLYWEMEKKERAVLFVKAVLSRGIA-YAEGDGEGQQGGPTGYLAWK 243 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y---~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~ty~~~~~~~~~~~~~~ 243 (502)
+.|++++|...|++....--. +.... -.+..+|-+.+++++|...+++..+..-. |++ .| .....+
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~--------a~Y~~g 113 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DY--------VLYMRG 113 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HH--------HHHHHH
Confidence 789999999999999875322 22232 34567889999999999999999876522 221 11 011111
Q ss_pred HHH-----------------hCc---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC
Q 010739 244 MMV-----------------EGK---YVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIA 303 (502)
Q Consensus 244 ~~~-----------------~g~---~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p 303 (502)
.+. ..+ ..+|++.|+++.+. -|+ . .-..+|...+..+... +
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S-~ya~~A~~rl~~l~~~-l-- 174 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------S-QYTTDATKRLVFLKDR-L-- 174 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------C-hhHHHHHHHHHHHHHH-H--
Confidence 110 011 12333444444333 222 2 2233333322222100 0
Q ss_pred chhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 304 ELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 304 ~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
-..- ..+...|-+ |.+..|..-|+.++++- ..+......-.++.+|...|..++|......+.
T Consensus 175 a~~e--~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKYE--LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHH--HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0000 135556777 88888888888877765 222233466677788888888888877766554
No 217
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.66 E-value=12 Score=35.11 Aligned_cols=167 Identities=12% Similarity=0.023 Sum_probs=91.5
Q ss_pred HHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhc-cHhhHHHHHHHHhhC--------CCCCC---
Q 010739 124 SQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEER-GVGDVVDLLVDMDCV--------GLKPG--- 190 (502)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~--------g~~p~--- 190 (502)
.+.|+. +.|...+.+..... ..++.....+-+.+...-..+. ..+ +++.|..++++-.+. ...|+
T Consensus 4 ~~~~~~-~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDL-DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCH-HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 456788 78888888887644 3344433333332211111222 456 888888877765433 13333
Q ss_pred --HHHHHHHHHHHHhcCcHH---HHHHHHHHHHHcC-CCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcC
Q 010739 191 --FSMIEKVISLYWEMEKKE---RAVLFVKAVLSRG-IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESG 264 (502)
Q Consensus 191 --~~~y~~li~~~~~~g~~~---~A~~l~~~m~~~~-~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g 264 (502)
..++..++.+|...+..+ +|.++++.+.... -.|.+... -+....+.++.+++.+.+.+|...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L----------~l~il~~~~~~~~~~~~L~~mi~~- 150 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLL----------KLEILLKSFDEEEYEEILMRMIRS- 150 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHH----------HHHHHhccCChhHHHHHHHHHHHh-
Confidence 366778888888888755 4555666664332 12221000 111112247799999999999877
Q ss_pred CCCCHhHHHHHHHHH---HhccccHHHHHHHHHHHHHcCCCCch
Q 010739 265 LKPEVYSYLIALTAV---VKELNEFGKALRKLKGYVRAGSIAEL 305 (502)
Q Consensus 265 ~~p~~~ty~~li~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~ 305 (502)
+.-....+..+++.+ ... ....+...+..+....+.|..
T Consensus 151 ~~~~e~~~~~~l~~i~~l~~~--~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 151 VDHSESNFDSILHHIKQLAEK--SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cccccchHHHHHHHHHHHHhh--CcHHHHHHHHHHHHHHhCCCh
Confidence 221334444444444 444 355666667777544444443
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.63 E-value=0.48 Score=34.36 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC----CC-CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 149 ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV----GL-KPG-FSMIEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 149 ~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~~y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
.+|+.+-..+. ..|++++|+..|++..+. |- .|+ ..+++.+-..|.+.|++++|.+.+++-.
T Consensus 6 ~~~~~la~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYR--------ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHH--------HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666666 899999999999987754 21 233 5789999999999999999999998764
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.59 E-value=2.9 Score=41.26 Aligned_cols=57 Identities=11% Similarity=-0.145 Sum_probs=28.3
Q ss_pred HHHHhc-CcHHhHHHHHHHHHHcCCCCchH-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 313 IEKYQS-DLLADGSRLSSWAIQEGGSSLYG-VVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 313 i~~~~~-g~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
-..|.+ |++++|...|++........... .+|..+-.+|.+.|+.++|+..+++..+
T Consensus 82 G~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 82 GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444 55555555555444443222111 2455555566666666666666655554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.97 E-value=0.76 Score=33.29 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 412 KTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
.+++.+-..|...|++++|++.+++-
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445566666666666666666654
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.86 E-value=15 Score=35.03 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=64.0
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN 390 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~ 390 (502)
.|..+.. |....|.++..+ -++| |-.-|...|.+|+..++|++-..+... +-.++-|-.++.+|.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~---Fkv~--dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKE---FKVP--DKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHH---cCCc--HHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 3444444 777777775422 2233 344777777777777777776665432 123466777777777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 391 EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 391 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
+..+|..+... .++..-+..|.+.|++.+|.+.--+
T Consensus 252 ~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 252 NKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777666655 1234456777777777777665443
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.73 E-value=1.2 Score=31.67 Aligned_cols=49 Identities=12% Similarity=-0.036 Sum_probs=25.8
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+++++|.++++++....... ...|...-..+.+.|++++|...|+...+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred CCHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555443222 22454455555556666666666665553
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.58 E-value=4.5 Score=39.93 Aligned_cols=66 Identities=15% Similarity=-0.042 Sum_probs=55.9
Q ss_pred CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 010739 338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGSAVSRLLSRIEVM 405 (502)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~ 405 (502)
+.+...|+.+-.+|.+.|++++|+..|++-.+ +.|+. .+|..+-.+|...|+.++|.+.++.....
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999775 46764 46899999999999999999999776654
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.35 E-value=5.9 Score=39.75 Aligned_cols=136 Identities=12% Similarity=0.002 Sum_probs=94.0
Q ss_pred ccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC
Q 010739 110 RLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP 189 (502)
Q Consensus 110 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p 189 (502)
.++++..+.++..+-+.|.. +.|+++-..-..+ | ..+. +.|+++.|.+.. .-..
T Consensus 292 ~i~~~~~~~i~~fL~~~G~~-e~AL~~~~D~~~r-------F----eLAl--------~lg~L~~A~~~a------~~~~ 345 (443)
T PF04053_consen 292 NIPKDQGQSIARFLEKKGYP-ELALQFVTDPDHR-------F----ELAL--------QLGNLDIALEIA------KELD 345 (443)
T ss_dssp G--HHHHHHHHHHHHHTT-H-HHHHHHSS-HHHH-------H----HHHH--------HCT-HHHHHHHC------CCCS
T ss_pred cCChhHHHHHHHHHHHCCCH-HHHHhhcCChHHH-------h----HHHH--------hcCCHHHHHHHH------HhcC
Confidence 34456689999999999999 8999886443221 2 3233 679999999953 3334
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
+...|..|-+...+.|+++-|++.|.+..+.+ -+++-+...|+.+...++-+.-...|-
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~-----------------~L~lLy~~~g~~~~L~kl~~~a~~~~~---- 404 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDFS-----------------GLLLLYSSTGDREKLSKLAKIAEERGD---- 404 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH-----------------HHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc-----------------ccHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence 78899999999999999999999998775433 267777778998887777776665533
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKG 295 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~ 295 (502)
+|....++.-. |+.++..+++.+
T Consensus 405 --~n~af~~~~~l-gd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 --INIAFQAALLL-GDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHHH-T-HHHHHHHHHH
T ss_pred --HHHHHHHHHHc-CCHHHHHHHHHH
Confidence 56667777777 688888765543
No 225
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=90.23 E-value=5.3 Score=32.94 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=65.7
Q ss_pred HHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCCC-HHHHHHHHHH
Q 010739 365 WEMKLVGKEADGD--LYDIVLAICASQNEGSAVSRLLSRIEVMNS-----LCKKKTLSWLLRGYIKGGH-INDAAETLTK 436 (502)
Q Consensus 365 ~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-----~p~~~~~~~li~~~~~~g~-~~~A~~l~~~ 436 (502)
.-|++.+..++.. ..|+++...+..++......+++.+..... ..+..+|.+++.+..+..- ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3345555655553 357777777777777777777766632221 3356678888888876665 3456778888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHc
Q 010739 437 MLDLGLYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 437 m~~~g~~p~~~t~~~ll~~~~~ 458 (502)
|++.+.+++..-|..++.+|.+
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHc
Confidence 8888888899999999999876
No 226
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.00 E-value=7 Score=32.78 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=69.0
Q ss_pred HHHHHHHHHH---HhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 192 SMIEKVISLY---WEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 192 ~~y~~li~~~---~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
.+.+.||... .+.++.++++.+++.|... .|....... +-.|-++..|+|.+|.++|+++...+ |.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~-------~~~~l~i~r~~w~dA~rlLr~l~~~~--~~ 76 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDL-------FDGWLHIVRGDWDDALRLLRELEERA--PG 76 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHH-------HHHHHHHHhCCHHHHHHHHHHHhccC--CC
Confidence 3445555444 5678999999999998654 354433333 35677777899999999999987652 33
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHH-HHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKL-KGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~-~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~ 326 (502)
..--..|+..|... .-+..++.+ .+....+-.|+.. .|+..+.. .+...|..
T Consensus 77 ~p~~kALlA~CL~~--~~D~~Wr~~A~evle~~~d~~a~----~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 77 FPYAKALLALCLYA--LGDPSWRRYADEVLESGADPDAR----ALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHHH--cCChHHHHHHHHHHhcCCChHHH----HHHHHHHHhccccchhh
Confidence 33333444444444 223333333 3345555555555 46666555 44444443
No 227
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.79 E-value=1.4 Score=40.87 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVG---KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLL 418 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li 418 (502)
.+-..++..--...+++.+...+-+++... ..|+... .+.+..|-+ -+.+.+..++..=..+|+-||..+++.+|
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHH
Confidence 444555555555677777777777766431 2222211 122222222 34556666666667777777777777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCC
Q 010739 419 RGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
+.+.+.+++.+|..+...|....
T Consensus 143 D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH
Confidence 77777777777777766665544
No 228
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.52 E-value=7.4 Score=33.58 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc---CCCCC
Q 010739 192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES---GLKPE 268 (502)
Q Consensus 192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~---g~~p~ 268 (502)
..+..+.+.|++.|+.+.|.+.|.++.+....+....= . .-.++...+..|++..+.....+.... |-.++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id-~-----~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKID-M-----CLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHH-H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 57889999999999999999999999877644432000 0 000223333358888888877766654 22222
Q ss_pred HhHHHHHHHHHHhcc-ccHHHHHHHHHHH
Q 010739 269 VYSYLIALTAVVKEL-NEFGKALRKLKGY 296 (502)
Q Consensus 269 ~~ty~~li~~~~~~~-~~~~~a~~~~~~m 296 (502)
...--.+..|+...+ +++.+|-+.|-+.
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 222223333433333 5677776655443
No 229
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=9.4 Score=35.63 Aligned_cols=136 Identities=10% Similarity=0.010 Sum_probs=86.4
Q ss_pred cCCCCCHhHHHHHHHHHHhccccHHHHHHHHH-HHHH----------cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHH
Q 010739 263 SGLKPEVYSYLIALTAVVKELNEFGKALRKLK-GYVR----------AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSW 330 (502)
Q Consensus 263 ~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~-~m~~----------~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~ 330 (502)
..+.|...-| .+-++|... .+++. .+.++ .+.. .|....+.+.. .++..-.. .+++++...+-+
T Consensus 14 ~~l~p~~rr~-~LsS~fs~e-~~w~~-r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd-~~V~v~~~~~~idd~~~~LyK 89 (418)
T KOG4570|consen 14 PQLSPAGRRY-LLSSAFSDE-HKWEA-REKEHYKLADLGSLMDKKFERGLPVSSLTVD-RLVDVISSREEIDDAEYYLYK 89 (418)
T ss_pred hcCCchhcch-hhHHHhhhh-hhhhH-HHHHHHHHhcccccchhhhhcCCCcceeehh-hhhhccccccchhHHHHHHHH
Confidence 3556655443 244555555 44543 33343 3322 23333444443 45666665 888898887765
Q ss_pred HHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 331 AIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 331 m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
++... .+....++|- -++-.-++++++.++..=.+-|+-||..|++.+|+.+.+.+++.+|.++.-.|....
T Consensus 90 lRhs~~a~~~~~~~~~~~i----rlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 90 LRHSPNAWYLRNWTIHTWI----RLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HhcCcchhhhccccHHHHH----HHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 55433 2232323332 334456778999999988899999999999999999999999999988886665443
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.80 E-value=14 Score=37.00 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=40.2
Q ss_pred HHHhccccHHHHHHHHHHHHH-cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH
Q 010739 278 AVVKELNEFGKALRKLKGYVR-AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM 350 (502)
Q Consensus 278 ~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 350 (502)
++-+. |+.++|.+.+.+|.+ ....-+..+.. .|+..+.. +...++..++.+-.+...|..-..+|+..+--
T Consensus 268 Carkl-Gr~~EAIk~~rdLlke~p~~~~l~Ire-nLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 268 CARKL-GRLREAIKMFRDLLKEFPNLDNLNIRE-NLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHh-CChHHHHHHHHHHHhhCCccchhhHHH-HHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33344 677777777777743 32211221222 37777666 77777777777654444555455677765543
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.79 E-value=18 Score=32.69 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
..|...-.+|....++ ++|...+.+..+...-+...|+ ..+..+.|.-+.++|.+.. --+..
T Consensus 32 s~yekAAvafRnAk~f-eKakdcLlkA~~~yEnnrslfh---------------AAKayEqaamLake~~kls--Evvdl 93 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKF-EKAKDCLLKASKGYENNRSLFH---------------AAKAYEQAAMLAKELSKLS--EVVDL 93 (308)
T ss_pred HHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHhcccHHH---------------HHHHHHHHHHHHHHHHHhH--HHHHH
Confidence 3488888888888899 7888876665433222333332 3456677777777776641 12456
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHH
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAV 217 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m 217 (502)
|+....+|..+|..+.|-..++..
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 888999999999998887776654
No 232
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.61 E-value=35 Score=35.92 Aligned_cols=111 Identities=10% Similarity=-0.000 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010739 371 GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRV 450 (502)
Q Consensus 371 g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 450 (502)
|..-...|.+-.+.-+...|+..+|.++-.+.+ .||...|..=+.+++..+++++-+++-+.++. ..=|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence 444455566777778888899888887765543 68999999999999999999998877776542 34566
Q ss_pred HHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhhh
Q 010739 451 AVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 451 ~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~ 499 (502)
-.+.+|.+ .|+.++|.+.+....+ .+-.+.+|.++|++-.|
T Consensus 749 PFVe~c~~----~~n~~EA~KYiprv~~----l~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 749 PFVEACLK----QGNKDEAKKYIPRVGG----LQEKVKAYLRVGDVKEA 789 (829)
T ss_pred hHHHHHHh----cccHHHHhhhhhccCC----hHHHHHHHHHhccHHHH
Confidence 78899988 8999999999754432 22789999999987654
No 233
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.58 E-value=7.7 Score=32.04 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=62.1
Q ss_pred HHHHHHHHH---HhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 193 MIEKVISLY---WEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 193 ~y~~li~~~---~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
+.+.||+.. ...++.++++.+++.|.-. .|+..-... +-.|-++..|+|++|.++|++..+.+..
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~-------~dg~l~i~rg~w~eA~rvlr~l~~~~~~--- 76 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDM-------FDGWLLIARGNYDEAARILRELLSSAGA--- 76 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccch-------hHHHHHHHcCCHHHHHHHHHhhhccCCC---
Confidence 444444443 3488999999999999643 455433333 4667788899999999999999877422
Q ss_pred hHHHHHHHHHHhccccHHHHHHHH-HHHHHcCCCCchh
Q 010739 270 YSYLIALTAVVKELNEFGKALRKL-KGYVRAGSIAELD 306 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~-~~m~~~g~~p~~~ 306 (502)
..|..-+.++|-.. .-|-.++.+ .+....+-.|+.+
T Consensus 77 ~p~~kAL~A~CL~a-l~Dp~Wr~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 77 PPYGKALLALCLNA-KGDAEWHVHADEVLARDADADAV 113 (153)
T ss_pred chHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCHhHH
Confidence 24555566666552 223333322 2335555555544
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=88.18 E-value=15 Score=31.05 Aligned_cols=87 Identities=11% Similarity=0.035 Sum_probs=58.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739 350 MYICAGRGLEAERQLWEMKLVGKEADGDLY-DIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (502)
.+.+.|++++|..+|.-+... .|...-| ..|-.+|-..++++.|...+...-..+. -|...+-..-.+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 344578888888888877653 2322333 3344555566788888888866655542 34555556777888889999
Q ss_pred HHHHHHHHHHH
Q 010739 429 DAAETLTKMLD 439 (502)
Q Consensus 429 ~A~~l~~~m~~ 439 (502)
.|...|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99998888776
No 235
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.81 E-value=7.3 Score=36.13 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 010739 377 DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDRVA 451 (502)
Q Consensus 377 ~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 451 (502)
.++..++..+...|+.+.+...++++.... .-+...|..+|.+|.+.|+...|...|+++.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566677777788888888888877766 34788888899999999999999888887765 589999888887
Q ss_pred HHHHH
Q 010739 452 VLQGL 456 (502)
Q Consensus 452 ll~~~ 456 (502)
..+..
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 77775
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.47 E-value=29 Score=33.63 Aligned_cols=90 Identities=14% Similarity=-0.038 Sum_probs=58.9
Q ss_pred HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh
Q 010739 125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG-FSMIEKVISLYWE 203 (502)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~ 203 (502)
-.|++ +.|.+-|+.|.... .+--.=++++.-..+ +.|..+.|.++-+.-.. ..|. ...+.+.+...|.
T Consensus 132 ~eG~~-~~Ar~kfeAMl~dP----EtRllGLRgLyleAq----r~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~ 200 (531)
T COG3898 132 LEGDY-EDARKKFEAMLDDP----ETRLLGLRGLYLEAQ----RLGAREAARHYAERAAE--KAPQLPWAARATLEARCA 200 (531)
T ss_pred hcCch-HHHHHHHHHHhcCh----HHHHHhHHHHHHHHH----hcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHh
Confidence 35788 78888888886543 221111222211111 67777777777665443 3333 3678899999999
Q ss_pred cCcHHHHHHHHHHHHHcC-CCCC
Q 010739 204 MEKKERAVLFVKAVLSRG-IAYA 225 (502)
Q Consensus 204 ~g~~~~A~~l~~~m~~~~-~~p~ 225 (502)
.|+|+.|+++++.-++.. +.++
T Consensus 201 ~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 201 AGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred cCChHHHHHHHHHHHHHHhhchh
Confidence 999999999999887655 4444
No 237
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.18 E-value=1.6 Score=26.18 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
+|+.|-+.|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999854
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=87.05 E-value=27 Score=34.82 Aligned_cols=170 Identities=10% Similarity=0.003 Sum_probs=103.5
Q ss_pred hhH--HHHHHHHHHcCCCh----HHHHHHHHHHHHcC--CCC-hHHHHHHHHHHhhh-hhhhhhhhccHhhHHHHHHHHh
Q 010739 114 REL--QLVLVYFSQEGRDS----WCALEVFEWLKKEN--RVD-NETMELMVSIMCSW-VKKYIEEERGVGDVVDLLVDMD 183 (502)
Q Consensus 114 ~~~--~~ll~~~~~~~~~~----~~a~~~~~~m~~~~--~~~-~~~~~~li~~~~~~-~~~~~~~~~~~~~a~~~~~~m~ 183 (502)
+.| ...+.+.....+.+ ..|+.+|.+..... .|+ ...|..+--+.... +...........+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 336 66777766633322 57778898887333 343 34444443322221 1112213566777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHH-HHH
Q 010739 184 CVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIH-LRE 262 (502)
Q Consensus 184 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~-m~~ 262 (502)
+.+- -|......+-.+..-.|+++.|..+|++-...+ ||...- ..+..|....+|+.++|.+.+++ ++-
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASL-------YYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6543 377777777777788888999999999887655 553110 01145555668999999999988 433
Q ss_pred cCCCCCHhHHHHHHHHHHhccccHHHHHHHHHH
Q 010739 263 SGLKPEVYSYLIALTAVVKELNEFGKALRKLKG 295 (502)
Q Consensus 263 ~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~ 295 (502)
.-.+-........|+.|+.. ..+++++++-+
T Consensus 402 sP~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 432 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYVPN--PLKNNIKLYYK 432 (458)
T ss_pred CchhhHHHHHHHHHHHHcCC--chhhhHHHHhh
Confidence 32233334445566677777 48888776644
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.03 E-value=16 Score=30.10 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=21.2
Q ss_pred hCcHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739 247 EGKYVDAIKLVIHLRESGLKP---EVYSYLIALTAVVKELNEFGKALRKLKGY 296 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p---~~~ty~~li~~~~~~~~~~~~a~~~~~~m 296 (502)
.|++++|.+.|+.+... .+. ....--.++.++.+. +++++|...+++.
T Consensus 23 ~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~-~~y~~A~a~~~rF 73 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQ-GDYEEAIAAYDRF 73 (142)
T ss_pred hCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHH
Confidence 35555555555555443 111 112233344444444 4455554444444
No 240
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.53 E-value=19 Score=30.59 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-
Q 010739 326 RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV- 404 (502)
Q Consensus 326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~- 404 (502)
+..+.+.+.+.++.+ ..|..+|..+.+.|++.. +..+...++-||.......+-.... ....+.++=-.|..
T Consensus 15 EYirSl~~~~i~~~~-~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQH-ELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 344444555544433 477777777777776443 3444556666776666655533322 22233333222221
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
.+ ..+..++..+...|++-+|+++.+..
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 11 13445666777777777777777653
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.35 E-value=18 Score=33.14 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcC----CCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCC-CchHhHH
Q 010739 271 SYLIALTAVVKELNEFGKALRKLKGYVRAG----SIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGS-SLYGVVH 344 (502)
Q Consensus 271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~-~~~~~~~ 344 (502)
-|+.-+..+-.. ++..|...|...++.. ..||..-| |-..+-. |+.++|-.+|..+.+.... +.-....
T Consensus 144 ~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~s~~~~nA~yW---LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKSG--DYAEAEQAFQAFIKKYPNSTYTPNAYYW---LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCcccchhHHH---HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 566666655443 5777776666664432 22233221 4444333 6666666666555554311 1111244
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 345 ERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
--+-....+.|+.++|...|++..+
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444445555555555555555543
No 242
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.26 E-value=20 Score=30.55 Aligned_cols=138 Identities=15% Similarity=0.087 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 010739 145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS-MIEKVISLYWEMEKKERAVLFVKAVLSRGIA 223 (502)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 223 (502)
..+...|..-++ +. +.+..++|+.-|.++.+.|..--.+ .---+-...+..|+...|..-|++.-...-.
T Consensus 56 s~sgd~flaAL~-lA--------~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~ 126 (221)
T COG4649 56 SKSGDAFLAALK-LA--------QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI 126 (221)
T ss_pred ccchHHHHHHHH-HH--------HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC
Confidence 346678888888 77 8899999999999999988642221 1112233457889999999999998765544
Q ss_pred CCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 010739 224 YAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR 298 (502)
Q Consensus 224 p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~ 298 (502)
|-.. .... ---.|.++.+|.++.+..-.+-+-..|-.--...-..|--+-.+. |++.+|.++|.....
T Consensus 127 P~~~rd~AR------lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka-gd~a~A~~~F~qia~ 195 (221)
T COG4649 127 PQIGRDLAR------LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA-GDFAKAKSWFVQIAN 195 (221)
T ss_pred cchhhHHHH------HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc-cchHHHHHHHHHHHc
Confidence 4421 0000 001334444677877777666655443333333334444455566 677777777777643
No 243
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.23 E-value=37 Score=33.62 Aligned_cols=139 Identities=16% Similarity=0.053 Sum_probs=91.7
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPE------VYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS 318 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~------~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~ 318 (502)
+.+++.+|.++|.+..+. ..-+ .+.-+-+|+||... +.+.....+.++ ...|-.+-...+ .-+-.|..
T Consensus 18 kq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~~s~~l~LF--~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFGKSAYLPLF--KALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcCCchHHHHH--HHHHHHHh
Confidence 468999999999988765 2222 34456788999888 588777777777 555533333322 12333666
Q ss_pred CcHHhHHHHHHHHHHc--C-CCC----------chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHH
Q 010739 319 DLLADGSRLSSWAIQE--G-GSS----------LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK----EADGDLYDI 381 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~--~-~~~----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ 381 (502)
+....|.+.+..-... + .++ .|.+-=+...+++...|++.++..++++|...=+ ..+..+||-
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899888877544333 2 111 1222236677888899999999999999876543 478889988
Q ss_pred HHHHHHhc
Q 010739 382 VLAICASQ 389 (502)
Q Consensus 382 li~~~~~~ 389 (502)
++-.++++
T Consensus 173 ~vlmlsrS 180 (549)
T PF07079_consen 173 AVLMLSRS 180 (549)
T ss_pred HHHHHhHH
Confidence 66555443
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=85.89 E-value=19 Score=30.40 Aligned_cols=89 Identities=13% Similarity=-0.074 Sum_probs=53.2
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCchhchHHHHHHHHhc
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAELDGKNLGLIEKYQS 318 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~~li~~~~~ 318 (502)
..+++...|++++|..+|.-+... .|-..-|..=+.+|++.-+.+++|+..+......+ -.|.+.. ..-..|..
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f---~agqC~l~ 117 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF---FTGQCQLL 117 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc---hHHHHHHH
Confidence 355666678888888888877664 33334454445555555467888888776553322 2233322 24455666
Q ss_pred -CcHHhHHHHHHHHHH
Q 010739 319 -DLLADGSRLSSWAIQ 333 (502)
Q Consensus 319 -g~~~~a~~~~~~m~~ 333 (502)
|+.+.|...|.....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 777777777765554
No 245
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.07 E-value=23 Score=32.87 Aligned_cols=118 Identities=10% Similarity=-0.009 Sum_probs=69.5
Q ss_pred CcHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHh-ccccHHHHHHHHHHHH-HcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739 248 GKYVDAIKLVIHLRE-SGLKPEVYSYLIALTAVVK-ELNEFGKALRKLKGYV-RAGSIAELDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 248 g~~~~a~~~~~~m~~-~g~~p~~~ty~~li~~~~~-~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~~li~~~~~-g~~~~ 323 (502)
..+.+|+++|+.... ..+--|..+...+++.... .+.....-.++++-+. ..|-.++..+.. .+|+.+++ +++..
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~-~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVII-SILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHH-HHHHHHHhcccHHH
Confidence 345677777773322 2355677777777777777 3122222333333332 223333333332 57777777 88888
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWE 366 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 366 (502)
-.++++.-.....+..|...|..+|......|+..-...+.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8887766555544555666788888888888876665555543
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.00 E-value=51 Score=35.31 Aligned_cols=173 Identities=13% Similarity=0.010 Sum_probs=104.9
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--c-ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE--L-NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ 317 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~--~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~ 317 (502)
+.-.++...++-|+.+-+. ...|..+...+...|+.. | |++++|...+-+-+ |.. ++ ..+|.-|-
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-----~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~l-e~----s~Vi~kfL 408 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-----QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFL-EP----SEVIKKFL 408 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccC-Ch----HHHHHHhc
Confidence 3333444555666555432 233455555566555544 2 78999977554432 221 11 14777787
Q ss_pred c-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010739 318 S-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVS 396 (502)
Q Consensus 318 ~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 396 (502)
. .++.+-..+++.+.+.|....| .-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|-+.+-+++|.
T Consensus 409 daq~IknLt~YLe~L~~~gla~~d--httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSD--HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccch--hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7 8888888899999999988888 77789999999999998887776544 2221 111344556666666666655
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 397 RLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 397 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
.+-..... +..... -.+-..|++++|++.++.|-
T Consensus 484 ~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence 44332221 222222 23345678888888887653
No 247
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.80 E-value=57 Score=34.52 Aligned_cols=161 Identities=9% Similarity=-0.016 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCH---H
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGF---S 192 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~ 192 (502)
...+|-.|.|.|.. +.|.++.....+.-......|-..+..++..-.... ....-+....-|++..+.....|. .
T Consensus 114 ~Wa~Iyy~LR~G~~-~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l-~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 114 IWALIYYCLRCGDY-DEALEVANENRNQFQKIERSFPTYLKAYASSPDRRL-PPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp HHHHHHHHHTTT-H-HHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS----TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred cHHHHHHHHhcCCH-HHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 78899999999999 899999966655544445566666676653211111 122334555556666555443344 3
Q ss_pred HHHHHHHHHHhcCc--H----HHHHHH--HHHHH-HcCCCCC---Cccccc---------------cCCCCchHHHHHHH
Q 010739 193 MIEKVISLYWEMEK--K----ERAVLF--VKAVL-SRGIAYA---EGDGEG---------------QQGGPTGYLAWKMM 245 (502)
Q Consensus 193 ~y~~li~~~~~~g~--~----~~A~~l--~~~m~-~~~~~p~---~~ty~~---------------~~~~~~~~~~~~~~ 245 (502)
+|..+ +-|...+ . ...++. |+-+. ..+...+ ...|+- ..+.-+.......+
T Consensus 192 vY~il--g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~Ll 269 (613)
T PF04097_consen 192 VYKIL--GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLYFQVLL 269 (613)
T ss_dssp HHHHH--HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------HHHHHH
T ss_pred HHHHH--hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHHHHHHH
Confidence 45444 2222211 1 112222 11111 1111111 111211 11122223445566
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE 282 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 282 (502)
..|+++.|++++.+ ..+...|.+.+.+.+.-+.-.
T Consensus 270 LtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL 304 (613)
T PF04097_consen 270 LTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLL 304 (613)
T ss_dssp HTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--
T ss_pred HHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCC
Confidence 68999999998887 334556777777766665544
No 248
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.60 E-value=48 Score=33.47 Aligned_cols=48 Identities=19% Similarity=0.008 Sum_probs=24.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 350 MYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
.+.+.|++..|+..|.++.... +-|...|..--.+|.+.|.+..|..=
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444555555555555555433 22444455555555555555554443
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.35 E-value=2.6 Score=25.20 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 413 TLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
+|+.|-..|.+.|++++|.++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678888999999999999998854
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=84.04 E-value=20 Score=28.93 Aligned_cols=88 Identities=16% Similarity=0.025 Sum_probs=58.2
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH-cCCCCchhchHHHHHHH--Hhc-CcH
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR-AGSIAELDGKNLGLIEK--YQS-DLL 321 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~~li~~--~~~-g~~ 321 (502)
..|+.+.|++.|.+-... .+-....||.--.++--. ++.++|++-+++-++ .|-...... ...+-.+ |.. |+.
T Consensus 55 E~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~trtac-qa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCL-APERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQTRTAC-QAFVQRGLLYRLLGND 131 (175)
T ss_pred hccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCccchHHH-HHHHHHHHHHHHhCch
Confidence 358999999999887654 334678899988888888 789999877776633 333311111 1122222 666 888
Q ss_pred HhHHHHHHHHHHcCC
Q 010739 322 ADGSRLSSWAIQEGG 336 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~ 336 (502)
+.|..-|+...+-|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888887776666553
No 251
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=83.85 E-value=28 Score=30.13 Aligned_cols=115 Identities=17% Similarity=0.062 Sum_probs=78.9
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcC---CCCchhchHHHHHHHH
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAG---SIAELDGKNLGLIEKY 316 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~~li~~~ 316 (502)
+.......|+..+|...|++-...-+.-|......+-++.... ++...|...++++.+.. -.||... .+-..|
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a~~tLe~l~e~~pa~r~pd~~L---l~aR~l 170 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAAQQTLEDLMEYNPAFRSPDGHL---LFARTL 170 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhcCCccCCCCchH---HHHHHH
Confidence 4555566799999999999988766777888877888888878 78999999999885443 3344442 455668
Q ss_pred hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHH
Q 010739 317 QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAE 361 (502)
Q Consensus 317 ~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (502)
.. |+..+|+.-|+........+.-..-|..+ +.+.|+.++|.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~---La~qgr~~ea~ 213 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQARIYYAEM---LAKQGRLREAN 213 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcchhHHH
Confidence 88 89999999888877665433333334433 34455544443
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.28 E-value=12 Score=34.70 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=57.3
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL-----VGKEADGDLYDIVLA 384 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~li~ 384 (502)
.++..+.. |+.+.+.+.+++......-. ...|..+|.+|.+.|+...|...|+.+.. .|+.|...+......
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYD--EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 56677777 88888888888777765444 35999999999999999999999998765 488888877666665
Q ss_pred H
Q 010739 385 I 385 (502)
Q Consensus 385 ~ 385 (502)
.
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 5
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.22 E-value=29 Score=29.94 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHH--H
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC-KKKTLSW--L 417 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p-~~~~~~~--l 417 (502)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+-.+|..+.-.+++..+...+......-..+ |...-|. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 6777778888888888888888888776554433 345566677777788887777665443322111 1111111 1
Q ss_pred HHH--HHhCCCHHHHHHHHHHHH
Q 010739 418 LRG--YIKGGHINDAAETLTKML 438 (502)
Q Consensus 418 i~~--~~~~g~~~~A~~l~~~m~ 438 (502)
..| +...+++.+|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 222 234678888888877654
No 254
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=83.10 E-value=78 Score=34.78 Aligned_cols=180 Identities=9% Similarity=0.033 Sum_probs=112.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGS 325 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~ 325 (502)
.+...|+..|=+-. .+.|+ ...|..|-.-|+.. .+...|.+.|..- ..++++..+...++.+.|.+ ..++.|.
T Consensus 472 K~~~~al~ali~al--rld~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KA--FeLDatdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 472 KNSALALHALIRAL--RLDVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKA--FELDATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHH--hcCCchhhhhHHHHHHHhhccccHHHHH
Confidence 33444544443322 23344 25677777777777 5666666555443 34555555544478888999 9999999
Q ss_pred HHHHHHHHcCCCCchHhHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 326 RLSSWAIQEGGSSLYGVVHERLLA--MYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 326 ~~~~~m~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
.+.-...+.. +.-...+|-.-. .|.+.++..+|..-|+.-. .+.| |...|..+-.+|...|++..|.++|...
T Consensus 547 ~I~l~~~qka--~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL--R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 547 EICLRAAQKA--PAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL--RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHhhhc--hHHHHHhhhhhccccccCccchhhHHHHHHHHh--cCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 9853322222 222233443333 3555788888888887665 3444 5667788889999999999999999877
Q ss_pred HHcCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHH
Q 010739 403 EVMNSLCKKKTLSW--LLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 403 ~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
.... |+ .+|.. .-..-|..|+.++|+..+.....
T Consensus 623 s~Lr--P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 623 SLLR--PL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhcC--cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6554 32 23333 23335677888888888877653
No 255
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.07 E-value=39 Score=31.49 Aligned_cols=101 Identities=11% Similarity=-0.002 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
..|-.|=..|.+.|+. ..|..-|..-.+....++..+..+-.++.. ......-.++..+|+++.+..- -|+.+
T Consensus 157 egW~~Lg~~ym~~~~~-~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~-----~a~~~~ta~a~~ll~~al~~D~-~~ira 229 (287)
T COG4235 157 EGWDLLGRAYMALGRA-SDALLAYRNALRLAGDNPEILLGLAEALYY-----QAGQQMTAKARALLRQALALDP-ANIRA 229 (287)
T ss_pred hhHHHHHHHHHHhcch-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hcCCcccHHHHHHHHHHHhcCC-ccHHH
Confidence 3399999999999999 799999999988765566666655554442 0034556789999999988543 36777
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
-.-|--.+...|++.+|...|+.|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7778888999999999999999998765
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.92 E-value=55 Score=32.92 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=48.1
Q ss_pred HHHHhc--CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q 010739 313 IEKYQS--DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK-EADGDLYDIVL 383 (502)
Q Consensus 313 i~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li 383 (502)
+.+|.+ |+.++|.+.|.+|.+........-....||.++...+.+.++..++.+-.+... +--...|+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 444444 888888888888876653333444777788888888888888888888643222 22345666655
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=82.89 E-value=23 Score=28.57 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=48.0
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHH---HHHHhcCChhH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-GKEADGDLYDIVL---AICASQNEGSA 394 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li---~~~~~~~~~~~ 394 (502)
|+++.|++.|.....--... ...||.--.++--.|+.++|++=+++..+. |-+ +.....+.+ ..|-..|+.+.
T Consensus 57 g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred cchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCchHH
Confidence 67777777776555443222 237777777777777777777777666554 222 222222222 24455566666
Q ss_pred HHHHHHHHHHcC
Q 010739 395 VSRLLSRIEVMN 406 (502)
Q Consensus 395 a~~l~~~m~~~~ 406 (502)
|..=|+.....|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 666665555554
No 258
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.87 E-value=6 Score=30.22 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739 174 DVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR 220 (502)
Q Consensus 174 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 220 (502)
+..+-+..+-...+.|+..+..+.+++|-|.+|+..|.++|+..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55566667777889999999999999999999999999999999855
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.68 E-value=32 Score=29.35 Aligned_cols=126 Identities=12% Similarity=-0.032 Sum_probs=57.2
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL---AICASQNEGSAV 395 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li---~~~~~~~~~~~a 395 (502)
+..++|+.-|..+...|.....+..---+-....+.|+...|...|++.-...-.|-..-=..-+ -.+...|.++..
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 44444555444444444322221222222223344555555555555555443333222111111 123344555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 010739 396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP 444 (502)
Q Consensus 396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 444 (502)
....+-+..-+...-...-..|--+-.+.|++.+|.+.|+.+.+.--.|
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 5444444333322122222235555567788888888887776644444
No 260
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.49 E-value=60 Score=32.30 Aligned_cols=207 Identities=13% Similarity=-0.002 Sum_probs=104.1
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSM--IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~--y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~ 245 (502)
..|+.+-+..++ +.|..|+... ..+.+...++.|+.+-+ +.+.+.|..|+....+. . ..+..++
T Consensus 11 ~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~-----~-t~L~~A~ 76 (413)
T PHA02875 11 LFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDI-----E-SELHDAV 76 (413)
T ss_pred HhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCc-----c-cHHHHHH
Confidence 677776665555 4577666533 34456666778887644 44456676666432111 0 1466667
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhch--HHHHHHHHhcC
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPE----VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGK--NLGLIEKYQSD 319 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~----~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~~li~~~~~g 319 (502)
..|+.+.+..+++ .|...+ ..-. +.+...+.. +..+ +++.+.+.|..|+.... .+.|..+...|
T Consensus 77 ~~g~~~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~-~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 77 EEGDVKAVEELLD----LGKFADDVFYKDGM-TPLHLATIL-KKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HCCCHHHHHHHHH----cCCcccccccCCCC-CHHHHHHHh-CCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 7888877655554 332221 1112 233444445 4443 34455667777654321 12454445447
Q ss_pred cHHhHHHHHHHHHHcCC--CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhH
Q 010739 320 LLADGSRLSSWAIQEGG--SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLY---DIVLAICASQNEGSA 394 (502)
Q Consensus 320 ~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~~~~~~ 394 (502)
+.+-+.-++ +.|. ...|..-+ +.+...+..|..+ +.+.+.+.|..|+...- .+++...+..|+.+-
T Consensus 147 ~~~~v~~Ll----~~g~~~~~~d~~g~-TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i 217 (413)
T PHA02875 147 DIKGIELLI----DHKACLDIEDCCGC-TPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI 217 (413)
T ss_pred CHHHHHHHH----hcCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence 776555544 3332 11121122 2333444556644 44555667777765432 245554455566554
Q ss_pred HHHHHHHHHHcCCCCCH
Q 010739 395 VSRLLSRIEVMNSLCKK 411 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~~ 411 (502)
+ +.+...|..++.
T Consensus 218 v----~~Ll~~gad~n~ 230 (413)
T PHA02875 218 V----RLFIKRGADCNI 230 (413)
T ss_pred H----HHHHHCCcCcch
Confidence 3 344445555443
No 261
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=81.22 E-value=61 Score=32.22 Aligned_cols=344 Identities=12% Similarity=0.066 Sum_probs=180.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH-HcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC--CCC---
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLK-KEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV--GLK--- 188 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~-~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~--- 188 (502)
.+.+|++|-.++-. ..+ ....... ..| .+-...|..++. + +.+.+++|.+.|..-... +..
T Consensus 49 ~grilnAffl~nld-~Me-~~l~~l~~~~~~s~~l~LF~~L~~-Y---------~~k~~~kal~~ls~w~~~~~~~~~~~ 116 (549)
T PF07079_consen 49 GGRILNAFFLNNLD-LME-KQLMELRQQFGKSAYLPLFKALVA-Y---------KQKEYRKALQALSVWKEQIKGTESPW 116 (549)
T ss_pred hhHHHHHHHHhhHH-HHH-HHHHHHHHhcCCchHHHHHHHHHH-H---------HhhhHHHHHHHHHHHHhhhcccccch
Confidence 56777877654433 222 2222332 233 222233333332 2 678888888877665554 322
Q ss_pred ---------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC----CCCCCccccccCCCCchHHHHHHHHh--------
Q 010739 189 ---------PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG----IAYAEGDGEGQQGGPTGYLAWKMMVE-------- 247 (502)
Q Consensus 189 ---------p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~~~ty~~~~~~~~~~~~~~~~~~-------- 247 (502)
+|...=+..++.+.+.|++.++..++++|..+= ...++.+||. .+.-+.++
T Consensus 117 Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~--------~vlmlsrSYfLEl~e~ 188 (549)
T PF07079_consen 117 LDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR--------AVLMLSRSYFLELKES 188 (549)
T ss_pred hhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH--------HHHHHhHHHHHHHHHh
Confidence 244455677888889999999999988887554 3478888876 33222221
Q ss_pred -------CcHHHHHHHHHHHHHc------CCCCCHhHHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCCCchhchHHHHH
Q 010739 248 -------GKYVDAIKLVIHLRES------GLKPEVYSYLIALTAVVKEL-NEFGKALRKLKGYVRAGSIAELDGKNLGLI 313 (502)
Q Consensus 248 -------g~~~~a~~~~~~m~~~------g~~p~~~ty~~li~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li 313 (502)
.-++.++-..++|... .+.|-..-+..++.-..-.. ....--.++++.....-+.|+-...--.|+
T Consensus 189 ~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~ 268 (549)
T PF07079_consen 189 MSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLK 268 (549)
T ss_pred cccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 2344444444555432 35566555555555554442 223333444444455556665442111244
Q ss_pred HHHhcCcHHhHHHHHHHHHHcCC---CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHH
Q 010739 314 EKYQSDLLADGSRLSSWAIQEGG---SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYD-------IVL 383 (502)
Q Consensus 314 ~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-------~li 383 (502)
..+.+ +.+++..+-+.+..... ...-+.++..++....+.++..+|-..+.-+.- +.|+...=. .+-
T Consensus 269 ~~f~~-~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq 345 (549)
T PF07079_consen 269 QQFMS-DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQ 345 (549)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHH
Confidence 44444 55666665554443331 111234788899999999999999988887763 334332111 111
Q ss_pred HHHH----hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhCCC-HHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 010739 384 AICA----SQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRG---YIKGGH-INDAAETLTKMLDL---GLYPEYMDRVAV 452 (502)
Q Consensus 384 ~~~~----~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~---~~~~g~-~~~A~~l~~~m~~~---g~~p~~~t~~~l 452 (502)
+..| ..-++..-..+|++....++. ..-....|+.+ +-+.|. -++|+++++..+.- .++--..++..+
T Consensus 346 ~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv 424 (549)
T PF07079_consen 346 DIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV 424 (549)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2222 111233445567777776643 22233344443 334555 78899999987752 122222333333
Q ss_pred HHHHHccccccccHHHHHHHHhhhhhcCCchhH
Q 010739 453 LQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPC 485 (502)
Q Consensus 453 l~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 485 (502)
=.+|...+ ....+...+++-+-..+.| +.|.
T Consensus 425 Kq~Y~qaL-s~~~~~rLlkLe~fi~e~g-l~~i 455 (549)
T PF07079_consen 425 KQAYKQAL-SMHAIPRLLKLEDFITEVG-LTPI 455 (549)
T ss_pred HHHHHHHH-hhhhHHHHHHHHHHHHhcC-CCcc
Confidence 34442110 1344555555555555666 4443
No 262
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.18 E-value=20 Score=29.66 Aligned_cols=89 Identities=9% Similarity=0.073 Sum_probs=67.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHH
Q 010739 341 GVVHERLLAMYICAGRGLEAERQLWEMKLVG-----KEADGDLYDIVLAICASQNE-GSAVSRLLSRIEVMNSLCKKKTL 414 (502)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~~~-~~~a~~l~~~m~~~~~~p~~~~~ 414 (502)
....|+++.-....+.+.-...+++.+.--. -..+..+|++++.+.+.... --.+..+|..+++.+..++..-|
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy 118 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3567888888888888888888888874221 12356679999999877666 44678888999998889999999
Q ss_pred HHHHHHHHhCCCHHH
Q 010739 415 SWLLRGYIKGGHIND 429 (502)
Q Consensus 415 ~~li~~~~~~g~~~~ 429 (502)
..||.++.+....+.
T Consensus 119 ~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 119 SCLIKAALRGYFHDS 133 (145)
T ss_pred HHHHHHHHcCCCCcc
Confidence 999999887644433
No 263
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=80.89 E-value=53 Score=31.30 Aligned_cols=155 Identities=11% Similarity=0.059 Sum_probs=94.2
Q ss_pred CcHHhHHHHHHHHHHcCCC---CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010739 319 DLLADGSRLSSWAIQEGGS---SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAV 395 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 395 (502)
+..++|.+.|+.....+.+ ..+.-....++....+.|..++-..+++.... .++...-..++.+.+...+.+..
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHH
Confidence 5688899999888876433 33334666777777788886666666665553 34677788899999999999998
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHccccccccHHHHH
Q 010739 396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI--NDAAETLTKM---LDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYL 470 (502)
Q Consensus 396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~l~~~m---~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~ 470 (502)
.++++.....+..++... ..++.++...+.. +.+++.+.+= ....+.++......++.++.........+++..
T Consensus 221 ~~~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 889988877543445554 4455566534444 7777766642 222344444466677776644333356677777
Q ss_pred HHHhhhh
Q 010739 471 NLCKRLS 477 (502)
Q Consensus 471 ~~~~~m~ 477 (502)
++++...
T Consensus 300 ~f~~~~~ 306 (324)
T PF11838_consen 300 EFFEDKP 306 (324)
T ss_dssp HHHHHHC
T ss_pred HHHhhCc
Confidence 7775443
No 264
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.58 E-value=4.7 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLS 219 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 219 (502)
..+++.|-..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46889999999999999999999998764
No 265
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.54 E-value=6.8 Score=29.59 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=42.5
Q ss_pred cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739 171 GVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR 220 (502)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 220 (502)
+.=++.+-++.+....+.|+....++.+++|-|.+|+..|.++|+..+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666677777889999999999999999999999999999988744
No 266
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.13 E-value=13 Score=28.41 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
+..+-++.+....+.|+.....+.+.+|-+..++..|.++++.++..- .+....|.++++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 334444444455566666666666666666666666666666665432 222335555544
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=79.49 E-value=65 Score=31.48 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=83.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCC--Cchh----chHHHHHHHHhc-CcHHhHHHHHHHHH-HcCCCCchHhHHH
Q 010739 274 IALTAVVKELNEFGKALRKLKGYVRAGSI--AELD----GKNLGLIEKYQS-DLLADGSRLSSWAI-QEGGSSLYGVVHE 345 (502)
Q Consensus 274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~----~~~~~li~~~~~-g~~~~a~~~~~~m~-~~~~~~~~~~~~~ 345 (502)
.++-+|-.. .+++..+++++.+....-. ++.. .|..+|.+ =.+ |+.++|++++..+. ....+.+| +|.
T Consensus 146 ~lllSyRdi-qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnR-rn~~gdre~Al~il~~~l~~~~~~~~d--~~g 221 (374)
T PF13281_consen 146 NLLLSYRDI-QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNR-RNKPGDREKALQILLPVLESDENPDPD--TLG 221 (374)
T ss_pred HHHHHhhhh-hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhh-cccCCCHHHHHHHHHHHHhccCCCChH--HHH
Confidence 444457777 6788888888888544211 1111 11111111 112 78888888887743 33344545 666
Q ss_pred HHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCC-hhHHHHHH----HHHHHcCCC
Q 010739 346 RLLAMYIC---------AGRGLEAERQLWEMKLVGKEADGDLY---DIVLAICASQNE-GSAVSRLL----SRIEVMNSL 408 (502)
Q Consensus 346 ~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~~~-~~~a~~l~----~~m~~~~~~ 408 (502)
.+-..|-. ....++|...|.+--+ +.||.++= .+|+........ -.+..++- ......|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 65555443 1235566666665432 33554332 223322222111 11222322 222233432
Q ss_pred C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 409 C---KKKTLSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 409 p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
- +--.+.++..+..-.|+.++|.+..++|....
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 22333448888888999999999999988663
No 268
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.33 E-value=18 Score=27.41 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739 359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIE 403 (502)
Q Consensus 359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~ 403 (502)
++.+-++.+....+.|+.....+.+.+|-+..++..|.++++..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444555666666666666666666666666665554
No 269
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.85 E-value=36 Score=28.21 Aligned_cols=17 Identities=35% Similarity=0.241 Sum_probs=7.8
Q ss_pred HcCChHHHHHHHHHHHH
Q 010739 353 CAGRGLEAERQLWEMKL 369 (502)
Q Consensus 353 ~~g~~~~A~~l~~~m~~ 369 (502)
+.|++++|.++|++..+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 34444444444444443
No 270
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.85 E-value=51 Score=30.28 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=60.8
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcC----CCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHH
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESG----LKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIE 314 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~ 314 (502)
....++++|++.+|..-|....+.. ..||. +=.|-.++... |++++|...|..+ ...+-.|-..-.-.-|-.
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666677888999998888888761 33333 33477888888 7888888888888 444443333221012333
Q ss_pred HHhc-CcHHhHHHHHHHHHHcC
Q 010739 315 KYQS-DLLADGSRLSSWAIQEG 335 (502)
Q Consensus 315 ~~~~-g~~~~a~~~~~~m~~~~ 335 (502)
...+ |+.++|..+|+++.+.-
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHC
Confidence 3444 88889988888876654
No 271
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=77.53 E-value=39 Score=27.84 Aligned_cols=56 Identities=13% Similarity=-0.100 Sum_probs=26.6
Q ss_pred HHHhcCcHHhHHHHHHHHHHcCC-CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 314 EKYQSDLLADGSRLSSWAIQEGG-SSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 314 ~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
..+.+|++++|.+.|+.+...-. .+......--++.+|.+.|++++|...+++..+
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444555555555555444331 111112333455555555555555555555443
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.01 E-value=1.3e+02 Score=33.74 Aligned_cols=146 Identities=14% Similarity=0.040 Sum_probs=73.4
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN 390 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~ 390 (502)
.++.-.+ |.+.+|+.++.. .+..--..|.+.-.-+.+.+.+++|--.|+..-+ ..-.+.+|-..|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~-----~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKP-----DSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG 979 (1265)
T ss_pred HHHHHHhcccchhhhheecc-----CHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence 3344444 666666665521 0000112333333334446666666655554321 123455666677
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHH
Q 010739 391 EGSAVSRLLSRIEVMNSLCKKKT--LSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEA 468 (502)
Q Consensus 391 ~~~~a~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 468 (502)
++.+|..+...+..-. +... -..|+.-+...++.-+|-++..+-... | .-.+.-+|+ +..+++
T Consensus 980 dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~k----a~~~~e 1044 (1265)
T KOG1920|consen 980 DWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCK----AKEWEE 1044 (1265)
T ss_pred cHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhh----HhHHHH
Confidence 7777776666553221 2222 234677777777777777777764432 1 122334455 556667
Q ss_pred HHHHHhhhhhcCCchhHH
Q 010739 469 YLNLCKRLSDTSLIGPCL 486 (502)
Q Consensus 469 a~~~~~~m~~~~~~~~~l 486 (502)
|++....-.+...+...+
T Consensus 1045 Alrva~~~~~~d~iee~l 1062 (1265)
T KOG1920|consen 1045 ALRVASKAKRDDIIEEVL 1062 (1265)
T ss_pred HHHHHHhcccchHHHHHH
Confidence 766655444333333333
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.92 E-value=1.1e+02 Score=32.87 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhh
Q 010739 86 FFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKY 165 (502)
Q Consensus 86 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~ 165 (502)
+.-|+.+-+.-...+..+.. ....--+.+-+.|++ +.|...|-+-...- ++ ..+|.-+.
T Consensus 350 y~~Ai~LAk~~~~d~d~~~~---------i~~kYgd~Ly~Kgdf-~~A~~qYI~tI~~l--e~---s~Vi~kfL------ 408 (933)
T KOG2114|consen 350 YKVAINLAKSQHLDEDTLAE---------IHRKYGDYLYGKGDF-DEATDQYIETIGFL--EP---SEVIKKFL------ 408 (933)
T ss_pred HHHHHHHHHhcCCCHHHHHH---------HHHHHHHHHHhcCCH-HHHHHHHHHHcccC--Ch---HHHHHHhc------
Confidence 78888888775544442211 123334556677888 78887765553322 22 23344466
Q ss_pred hhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010739 166 IEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAV 217 (502)
Q Consensus 166 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m 217 (502)
....+.+-..+++.+.+.|+. +...-+.|+.+|.|.++.++-.++.+.-
T Consensus 409 --daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 409 --DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred --CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 788888999999999999885 6666778999999999888776665443
No 274
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.56 E-value=52 Score=28.86 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCC-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC---CCCCCHHHHHH
Q 010739 121 VYFSQEGRDSWCALEVFEWLKKENRV-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV---GLKPGFSMIEK 196 (502)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~y~~ 196 (502)
-...+.|+. .|+..|-.+...+.. ++...-.+.. +- ...+.+++..++-...+. +-.+|+..+.+
T Consensus 115 y~Wsr~~d~--~A~~~fL~~E~~~~l~t~elq~aLAt-yY--------~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~s 183 (203)
T PF11207_consen 115 YHWSRFGDQ--EALRRFLQLEGTPELETAELQYALAT-YY--------TKRDPEKTIQLLLRALELSNPDDNFNPEILKS 183 (203)
T ss_pred HHhhccCcH--HHHHHHHHHcCCCCCCCHHHHHHHHH-HH--------HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 344555554 999999999888844 6666666655 44 578899999998876653 34778999999
Q ss_pred HHHHHHhcCcHHHHH
Q 010739 197 VISLYWEMEKKERAV 211 (502)
Q Consensus 197 li~~~~~~g~~~~A~ 211 (502)
|...|-+.|+++.|.
T Consensus 184 Las~~~~~~~~e~AY 198 (203)
T PF11207_consen 184 LASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHhcchhhhh
Confidence 999999999999885
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=76.07 E-value=6.7 Score=24.60 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 192 SMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.++..+-..|.+.|++++|.++|++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 357788999999999999999999998765
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.04 E-value=77 Score=30.53 Aligned_cols=131 Identities=8% Similarity=-0.064 Sum_probs=70.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-C----CCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHH
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLV-G----KEADGDLYDIVLAICASQNEGSAVSRLL----SRIEVMNSLCKKKTLSW 416 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~-g----~~p~~~t~~~li~~~~~~~~~~~a~~l~----~~m~~~~~~p~~~~~~~ 416 (502)
+|-.+..-.+.++++++.|+...+- . -......|..+=+.|....+.++|.-.. +.....++.-=..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3445555566777777777764432 1 1112345666667777777777665443 22233332211112222
Q ss_pred -----HHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 417 -----LLRGYIKGGHINDAAETLTKMLDLG-LYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 417 -----li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
|-.++-..|+..+|.+.-++..+-- ..-|..++..-+..+..-.+..|+.|.|..-++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 5556667777777777776654322 12355566665555544444467766666555443
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.95 E-value=9.5 Score=23.90 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHH
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELM 154 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l 154 (502)
..+..+-..|.+.|++ +.|.++|+...+...-|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~-~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQP-DEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4467788899999999 899999999999874466665544
No 278
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.92 E-value=7.4 Score=23.62 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 411 KKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
..+++.|-..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677788888889999999988888654
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.16 E-value=1.3 Score=36.70 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=28.6
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHH
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLW 365 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 365 (502)
+|..+.+ +..+...++++.+...+.. .+....+.++..|++.++.++.+++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 5555555 6666666666665544422 223455666666666655555555554
No 280
>PRK11906 transcriptional regulator; Provisional
Probab=74.72 E-value=97 Score=31.03 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739 357 GLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 357 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 435 (502)
..+|.++-++-.+.+ .-|......+=.+....++.+.|...|+.....+ || ...|...--...-+|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556665555432 1233333333344455566888888887776655 43 3333333333455788888888888
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhh
Q 010739 436 KMLDL-GLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKK 493 (502)
Q Consensus 436 ~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~ 493 (502)
+-.+. -.+--.......++-|+. .-++.+.+++-+-.+.. ....+|+...|-
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 449 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVP-----NPLKNNIKLYYKETESE-SHRVIIDNILKL 449 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcC-----CchhhhHHHHhhccccc-cchhhHHHHHHH
Confidence 74432 233333444455556664 56777777765443332 233344433333
No 281
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=73.71 E-value=63 Score=28.45 Aligned_cols=54 Identities=7% Similarity=-0.026 Sum_probs=38.2
Q ss_pred hhccHhhHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 168 EERGVGDVVDLLVDMDCVGL--KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~--~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
..|++.+|...|+.+....- +--....-.+..++-+.|+++.|...+++..+.-
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 68999999999999887521 1122345567788889999999999999887654
No 282
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.28 E-value=14 Score=23.87 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=26.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010739 418 LRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQ 454 (502)
Q Consensus 418 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 454 (502)
+....+.|-++++..++++|.+.|+..+...|..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3344566777788888888888888777777776664
No 283
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.64 E-value=30 Score=26.46 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHcCCC-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 010739 128 RDSWCALEVFEWLKKENRV-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK 206 (502)
Q Consensus 128 ~~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 206 (502)
.. ++|..+-+|+...+.. ..++.-. +..+. +.|++++|..+.+.+ ..||...|-+|-. .|.|-
T Consensus 20 cH-qEA~tIAdwL~~~~~~~E~v~lIR-lsSLm--------NrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl 83 (115)
T TIGR02508 20 CH-QEANTIADWLHLKGESEEAVQLIR-LSSLM--------NRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGL 83 (115)
T ss_pred HH-HHHHHHHHHHhcCCchHHHHHHHH-HHHHH--------ccchHHHHHHhcCCC----CCchHHHHHHHHH--Hhhcc
Confidence 45 6888899999877722 2223222 22355 899999999987765 4799999887754 47888
Q ss_pred HHHHHHHHHHHHHcC
Q 010739 207 KERAVLFVKAVLSRG 221 (502)
Q Consensus 207 ~~~A~~l~~~m~~~~ 221 (502)
.+++..-+.+|..+|
T Consensus 84 ~s~l~~rl~rla~sg 98 (115)
T TIGR02508 84 GSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888888777
No 284
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.43 E-value=1.1e+02 Score=30.48 Aligned_cols=179 Identities=12% Similarity=-0.012 Sum_probs=79.0
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFS--MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~--~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~ 245 (502)
..|+.+-+.. +.+.|..|+.. ...+.+...++.|+.+.+..+++ .|...+...... -.+ .+..++
T Consensus 44 ~~~~~~~v~~----Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~----g~t-pL~~A~ 110 (413)
T PHA02875 44 KFRDSEAIKL----LMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKD----GMT-PLHLAT 110 (413)
T ss_pred HcCCHHHHHH----HHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCC----CCC-HHHHHH
Confidence 5566553333 33456544432 12234555667788776655553 332221111000 001 344445
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCCHhHH--HHHHHHHHhccccHHHHHHHHHHHHHcCCCCch---hchHHHHHHHHhcCc
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPEVYSY--LIALTAVVKELNEFGKALRKLKGYVRAGSIAEL---DGKNLGLIEKYQSDL 320 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty--~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~~li~~~~~g~ 320 (502)
..|+.+ +++.+.+.|..|+.... .+.+...+.. ++.+-+ +.+.+.|..++. .-.+ .|.-+...|.
T Consensus 111 ~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~-~~~~~v----~~Ll~~g~~~~~~d~~g~T-pL~~A~~~g~ 180 (413)
T PHA02875 111 ILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMM-GDIKGI----ELLIDHKACLDIEDCCGCT-PLIIAMAKGD 180 (413)
T ss_pred HhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CCHHHH----HHHHhcCCCCCCCCCCCCC-HHHHHHHcCC
Confidence 556653 44445556666654221 2334444455 454433 233445544432 2222 4444444466
Q ss_pred HHhHHHHHHHHHHcCCCC--chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 010739 321 LADGSRLSSWAIQEGGSS--LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD 377 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 377 (502)
.+-+.-+ .+.|... .+.....+.+...++.|+.+ +.+.+.+.|..++..
T Consensus 181 ~eiv~~L----l~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 181 IAICKML----LDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHH----HhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 5544333 4444221 11011234444445566654 444455667776643
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.71 E-value=53 Score=36.64 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 010739 145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAY 224 (502)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 224 (502)
+||...+..+..+|+..+. ....+++|.-+|+.--+ ..-.+.+|-.+|+|.+|..+-.+|....-..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~----~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLR----EELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDEL 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHH----HhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHH
Confidence 5677777766666654444 77888888887764322 3456788888999999988888775322110
Q ss_pred CCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHH
Q 010739 225 AEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKL 293 (502)
Q Consensus 225 ~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~ 293 (502)
- .+ .--++-.+...+++-+|-++..+..+. +.-.+..+|+. ..+++|.++.
T Consensus 999 ~-~~--------a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka-~~~~eAlrva 1049 (1265)
T KOG1920|consen 999 V-IL--------AEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA-KEWEEALRVA 1049 (1265)
T ss_pred H-HH--------HHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH-hHHHHHHHHH
Confidence 0 00 000222333357777777776665543 22344556666 5677776543
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.52 E-value=1.7 Score=35.84 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=84.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
.+|..+.+.+.++.+..+++.+...+-.-+....+.++..|++.+..+...++++ ..+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 3677777888899999999999887766778888899999999888787766665 112223344788888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcc
Q 010739 426 HINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYK 495 (502)
Q Consensus 426 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~ 495 (502)
.+++|.-++.++-...-- +.-+.. .++++.|.+.+....+.. ++..+++.+...++
T Consensus 85 l~~~a~~Ly~~~~~~~~a---------l~i~~~----~~~~~~a~e~~~~~~~~~-l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEA---------LEILHK----LKDYEEAIEYAKKVDDPE-LWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTC---------SSTSSS----THCSCCCTTTGGGCSSSH-HHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHH---------HHHHHH----HccHHHHHHHHHhcCcHH-HHHHHHHHHHhcCc
Confidence 999999888875332110 111112 456666666666665544 66666666655443
No 287
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.03 E-value=13 Score=26.96 Aligned_cols=51 Identities=12% Similarity=-0.094 Sum_probs=33.2
Q ss_pred HHHhcCcHHhHHHHHHHHHHcCCCCch-HhHHHHHHHHHHHcCChHHHHHHH
Q 010739 314 EKYQSDLLADGSRLSSWAIQEGGSSLY-GVVHERLLAMYICAGRGLEAERQL 364 (502)
Q Consensus 314 ~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~ 364 (502)
..|.+...++|+..|....+....+++ -.+...++.+|+.-|+++++++.-
T Consensus 15 kLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 15 KLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345446777777777776666533323 346677788888888887776553
No 288
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.35 E-value=17 Score=23.46 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=29.4
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL 200 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 200 (502)
+.|-+.++..++++|.+.|+..+...|+.++.-
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 789999999999999999999999888887753
No 289
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.16 E-value=1.3e+02 Score=30.39 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=11.1
Q ss_pred HHHHhcCcHHHHHHHHHHHH
Q 010739 199 SLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 199 ~~~~~~g~~~~A~~l~~~m~ 218 (502)
.-|.-.|+...+...++++.
T Consensus 220 ~yy~~~gq~rt~k~~lkQLQ 239 (629)
T KOG2300|consen 220 SYYLLPGQVRTVKPALKQLQ 239 (629)
T ss_pred HHHhcccchhhhHHHHHHHH
Confidence 33445566666666665554
No 290
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=69.14 E-value=93 Score=28.45 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=102.0
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-C
Q 010739 146 VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG-I 222 (502)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~-~ 222 (502)
|-...|+--+. -. +.|++++|...|+.+...- -+-...+--.++-++-|.++.+.|...+++....- -
T Consensus 33 p~~~LY~~g~~-~L--------~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 33 PASELYNEGLT-EL--------QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred CHHHHHHHHHH-HH--------hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 44567887777 44 7999999999999998652 12234556667788889999999999999987654 3
Q ss_pred CCCCccccccCCCCchHHHHHHHH-------hCcHHHHHHHHHHHHHc-CCCCCH-hHHHHHHHHHHhccccHHHHHHHH
Q 010739 223 AYAEGDGEGQQGGPTGYLAWKMMV-------EGKYVDAIKLVIHLRES-GLKPEV-YSYLIALTAVVKELNEFGKALRKL 293 (502)
Q Consensus 223 ~p~~~ty~~~~~~~~~~~~~~~~~-------~g~~~~a~~~~~~m~~~-g~~p~~-~ty~~li~~~~~~~~~~~~a~~~~ 293 (502)
.||+ .|-. -+.+... ..+...+.+-|..|..- .--||+ .+ .+...-+..+
T Consensus 104 ~~n~-dY~~--------YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya------------~dA~~~i~~~ 162 (254)
T COG4105 104 HPNA-DYAY--------YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA------------PDAKARIVKL 162 (254)
T ss_pred CCCh-hHHH--------HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHH
Confidence 3442 1111 1111111 13444444444444322 012222 11 1111111111
Q ss_pred HHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCC-CchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 294 KGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGS-SLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 294 ~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+... .-+.+.+-+.|.+ |.+..|..-+++|++.-.. +......-.|..+|-+.|..++|...-.-+..
T Consensus 163 ~d~L--------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 163 NDAL--------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHH--------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 1110 0011245666777 7777777777777766311 11122455566677777777777666555543
No 291
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.66 E-value=1.1e+02 Score=28.90 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhCCCHHHH
Q 010739 411 KKTLSWLLRGYIKGGHINDA 430 (502)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A 430 (502)
..+|..|+.++|..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34788889999998887754
No 292
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.23 E-value=9.5 Score=20.77 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHH
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKA 216 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~ 216 (502)
....+-..+...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345677888999999999988763
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=67.66 E-value=17 Score=20.91 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 412 KTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
.+|..+-..|...|++++|++.|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4577788888899999999999988765
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.58 E-value=75 Score=26.79 Aligned_cols=48 Identities=19% Similarity=-0.044 Sum_probs=21.0
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
++.+++..++..+.--....+...++-..+ +.+.|++.+|..+|+++.
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELE 71 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHh
Confidence 455555555544444433322222333333 334455555555555543
No 295
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.42 E-value=1.3e+02 Score=29.48 Aligned_cols=95 Identities=12% Similarity=-0.032 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW-LLRG 420 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~-li~~ 420 (502)
.+++.+..+|.+.+++.+|+...++..+.+ .+|....--==.+|...|+++.|...|+.+.... |+-...+. ++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 477777788888888888888888777543 2232222222257777888888888888887654 54344443 5555
Q ss_pred HHhCCCHH-HHHHHHHHHHH
Q 010739 421 YIKGGHIN-DAAETLTKMLD 439 (502)
Q Consensus 421 ~~~~g~~~-~A~~l~~~m~~ 439 (502)
--+..+.+ +..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55544443 34677777764
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=65.99 E-value=20 Score=20.61 Aligned_cols=27 Identities=19% Similarity=-0.086 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+|..+-..|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 677777788888888888888887764
No 297
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.98 E-value=54 Score=29.19 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHH
Q 010739 271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSS 329 (502)
Q Consensus 271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~ 329 (502)
|.+..++.+.+. +.+.+++....+-++. +|........++..|+- |++++|..-++
T Consensus 3 Tl~~t~seLL~~-~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 3 TLRDTISELLDD-NSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred chHHHHHHHHHh-ccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 344556666666 5666666665555433 23322222356666666 66666665444
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.94 E-value=50 Score=29.01 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739 251 VDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY 296 (502)
Q Consensus 251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m 296 (502)
++|.+.|-.+...+.--|+...-.+-.-|.+. +.+++..++...
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr--D~~Kt~~ll~~~ 166 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKR--DPEKTIQLLLRA 166 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc--CHHHHHHHHHHH
Confidence 55666666666555444444444444444444 566666655544
No 299
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.83 E-value=1.3e+02 Score=29.34 Aligned_cols=79 Identities=16% Similarity=0.038 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010739 376 GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQG 455 (502)
Q Consensus 376 ~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 455 (502)
..+++.+.-++.+.+++..|.+.-......+ .+|....-.=-++|...|+++.|...|+++++ +.|+-..-..=|..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3466777788899999999998888777766 44666666667788899999999999999886 56877777777777
Q ss_pred HH
Q 010739 456 LR 457 (502)
Q Consensus 456 ~~ 457 (502)
|.
T Consensus 334 l~ 335 (397)
T KOG0543|consen 334 LK 335 (397)
T ss_pred HH
Confidence 74
No 300
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.49 E-value=1.2e+02 Score=28.24 Aligned_cols=75 Identities=7% Similarity=0.008 Sum_probs=57.1
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 362 RQLWEMKLV-GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVM-NSLCKKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 362 ~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
++.+-+... |-.++..+...+|..++..+++....++|+..... +..-|...|..+|+.....|+..-..++.++
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 333433332 56788888899999999999999988888776655 4556888999999999999998766655553
No 301
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.35 E-value=7.7 Score=31.31 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=22.0
Q ss_pred Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH
Q 010739 316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM 350 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~ 350 (502)
..+ |.-.+|-++|++|...|.|+ | .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pP-d--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPP-D--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCC-c--cHHHHHHH
Confidence 344 66677777888888887776 3 57777654
No 302
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.18 E-value=15 Score=23.34 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 197 VISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
|-.+|.+.|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 6688999999999999999998655
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=62.92 E-value=12 Score=22.00 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=19.2
Q ss_pred CchHhHHHHHHHHHHHcCChHHHH
Q 010739 338 SLYGVVHERLLAMYICAGRGLEAE 361 (502)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~ 361 (502)
|.+...|+.+-..|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445668888888888888888885
No 304
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.91 E-value=1.3e+02 Score=28.09 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=66.5
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|+..+|...|...........+ .--.+..+|...|+.+.|..++..+-..--.........=|..+.+.....+...+
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~--~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l 225 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSE--AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL 225 (304)
T ss_pred cchhhHHHHHHHHHHhCcccch--HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 6666666666665555433333 44556777777888888887777665432222222222223334444444433333
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 399 LSRIEVMNSLC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 399 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
-..... .| |...--.+-..|...|+.+.|.+.+-.+..+
T Consensus 226 ~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 226 QRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333322 34 4444455788888899999998877666554
No 305
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.64 E-value=20 Score=22.73 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=17.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 417 LLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567777777777777777776554
No 306
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.54 E-value=20 Score=33.53 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010739 416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVA 451 (502)
Q Consensus 416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 451 (502)
.-|..-.+.|++++|+.+++|.++.|+.--..||..
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466666666666666666666666665554544443
No 307
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=60.46 E-value=1.2e+02 Score=26.69 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=24.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHc
Q 010739 417 LLRGYIKGGHINDAAETLTKMLDLG--LYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~ 458 (502)
+.+-|.+.|.+..|..-++.+++.- ..-.......++.++.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 4566778888888888888777652 11222234555555544
No 308
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.43 E-value=23 Score=25.63 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHH
Q 010739 118 LVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELM 154 (502)
Q Consensus 118 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l 154 (502)
++++.+.+..-. ++|++++++|.++|..+...-+.|
T Consensus 36 tV~D~L~rCdT~-EEAlEii~yleKrGEi~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTE-EEALEIINYLEKRGEITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcH-HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 567777777777 899999999999997777655544
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=60.11 E-value=28 Score=19.76 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 413 TLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
.+..+-..|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455677788888999999998888664
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.57 E-value=2.3e+02 Score=29.64 Aligned_cols=181 Identities=14% Similarity=0.014 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhH-HHHHHHH-HHhccccHHHHHHHHHHHHH-------cCCCCchhchHHHHHHHHhcC
Q 010739 249 KYVDAIKLVIHLRESGLKPEVYS-YLIALTA-VVKELNEFGKALRKLKGYVR-------AGSIAELDGKNLGLIEKYQSD 319 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g~~p~~~t-y~~li~~-~~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~~li~~~~~g 319 (502)
....|.++++.....|..-.... =.....+ ++.. .+.+.|+..++...+ .|..+ ... -+-.+|.+|
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~-~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~-~lg~~Y~~g 301 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVT-QDLESAIEYLKLAAESFKKAATKGLPP---AQY-GLGRLYLQG 301 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhcccccc-ccHHHHHHHHHHHHHHHHHHHhhcCCc---ccc-HHHHHHhcC
Confidence 35677777777776654222221 1112222 3344 678888887777754 44222 221 355556552
Q ss_pred ------cHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH-c--CChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHh
Q 010739 320 ------LLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC-A--GRGLEAERQLWEMKLVGKEADGDLYDIVL--AICAS 388 (502)
Q Consensus 320 ------~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~--g~~~~A~~l~~~m~~~g~~p~~~t~~~li--~~~~~ 388 (502)
+.+.|.+++......+.+.- .|. +-..|-. . .+..+|.++|..--+.|..+-. -+-+++ .+...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a---~~~-lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~-~~la~~y~~G~gv 376 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDA---QYL-LGVLYETGTKERDYRRAFEYYSLAAKAGHILAI-YRLALCYELGLGV 376 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchH---HHH-HHHHHHcCCccccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhCCCc
Confidence 44557777766666665552 221 1111111 1 3456777777776666643221 111111 11122
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
..+.+.|...+....+.| .|...---..+..+.. ++.+.+.-.+..+.+.|
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 234455555555555555 2221111112222223 45555555555544444
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.52 E-value=99 Score=31.98 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=71.1
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|+++.|.++..+ ..+..-|..|-.+..+.|++..|.+.|.+-+ -|..|+-.+...|+-+....+
T Consensus 651 grl~iA~~la~e-------~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 651 GRLDIAFDLAVE-------ANSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred CcHHHHHHHHHh-------hcchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHH
Confidence 788888776533 2234689999999999999999999988765 356777777778888776666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
-...++.|. .|.-.-+|...|+++++.+++.+
T Consensus 715 a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 666666663 34455667788999999988875
No 312
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.40 E-value=39 Score=27.08 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739 176 VDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR 220 (502)
Q Consensus 176 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 220 (502)
.+-+......++.|+.....+.++++-|.+|+..|.++|+..+.+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344455556789999999999999999999999999999998754
No 313
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=59.09 E-value=1.9e+02 Score=28.56 Aligned_cols=86 Identities=12% Similarity=-0.006 Sum_probs=47.6
Q ss_pred HHhCcHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH--Hhc-
Q 010739 245 MVEGKYVDAIKLVIHLRES---GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK--YQS- 318 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~---g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~--~~~- 318 (502)
.++|++..|.+.|.+-... .++|+...|-..-.+..+. |+..+|+.--+. ...+.+.-. .. .+..+ +..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL-grl~eaisdc~~--Al~iD~syi-ka-ll~ra~c~l~l 334 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL-GRLREAISDCNE--ALKIDSSYI-KA-LLRRANCHLAL 334 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc-CCchhhhhhhhh--hhhcCHHHH-HH-HHHHHHHHHHH
Confidence 3568888888888876643 3455555555555555666 677777553222 222322211 11 23333 223
Q ss_pred CcHHhHHHHHHHHHHcC
Q 010739 319 DLLADGSRLSSWAIQEG 335 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~ 335 (502)
+++++|.+-|+...+..
T Consensus 335 e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 77777777776655544
No 314
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=57.71 E-value=63 Score=32.19 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC------CCC---CCHHHHHHHHHHH
Q 010739 131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV------GLK---PGFSMIEKVISLY 201 (502)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~------g~~---p~~~~y~~li~~~ 201 (502)
++-.++++.+.+.|.+|. ...-|+++. +.+++++|..-+++-.+. |++ -...+...++...
T Consensus 71 ~e~i~lL~~l~~~g~ad~--lp~TIDSyT--------R~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v 140 (480)
T TIGR01503 71 DEHIELLRTLQEEGGADF--LPSTIDAYT--------RQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAV 140 (480)
T ss_pred HHHHHHHHHHHHccCCCc--cceeeeccc--------ccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhC
Confidence 566777888888875553 444567787 999999999999887663 331 1344555666654
Q ss_pred -----HhcCcHHHHHHHHHHHHHcCCCCC---CccccccC----CCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 202 -----WEMEKKERAVLFVKAVLSRGIAYA---EGDGEGQQ----GGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 202 -----~~~g~~~~A~~l~~~m~~~~~~p~---~~ty~~~~----~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
.|+|. .++..+++-+...|+.-. ..+||.-. .+-.++. +|+.+-++.....+.|+..|.
T Consensus 141 ~~PvQvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~--------~WqyvdRL~g~y~e~gv~Inr 211 (480)
T TIGR01503 141 NLPLQIRHGT-PDARLLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLE--------DWQYCDRLVGFYEEQGVHINR 211 (480)
T ss_pred CCCeeccCCC-CcHHHHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHH--------HHHHHHHHHHHHHhcCceecc
Confidence 34454 347788888888886533 35666510 0111112 333344455555567999999
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHH--HHcCCCCchhch
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGY--VRAGSIAELDGK 308 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m--~~~g~~p~~~~~ 308 (502)
.+|..|...++-- .+.-|+.+++.+ .+.|++-=+..|
T Consensus 212 E~FGpLtgtLvPP--sisiav~ilE~Lla~eqGVksisvgy 250 (480)
T TIGR01503 212 EPFGPLTGTLVPP--SISNAIGIIEGLLAAEQGVKNITVGY 250 (480)
T ss_pred ccccCCCCCccCh--HHHHHHHHHHHHHHHHcCCeEEEecc
Confidence 9999877667666 588899999988 678886544443
No 315
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.59 E-value=68 Score=33.47 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=47.3
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHH--H-HHHHHHHHCCCCCCHHHHHHHHHH
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEA--E-RQLWEMKLVGKEADGDLYDIVLAI 385 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A--~-~l~~~m~~~g~~p~~~t~~~li~~ 385 (502)
+|..+|.. |++..+.++++...... ....-...||..|+.+.+.|.++-. . ..-+.+.+..+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67778877 88888888887766544 2222234677778888887765421 1 111222333466677788777765
Q ss_pred HHh
Q 010739 386 CAS 388 (502)
Q Consensus 386 ~~~ 388 (502)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=57.38 E-value=1.4e+02 Score=26.63 Aligned_cols=39 Identities=10% Similarity=-0.004 Sum_probs=25.7
Q ss_pred HHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHH
Q 010739 448 DRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYI 491 (502)
Q Consensus 448 t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~ 491 (502)
||--|-.-+.. .|++++|..+|+...... ++|-+=+-|+
T Consensus 239 tyFYL~K~~l~----~G~~~~A~~LfKLaiann-VynfVE~RyA 277 (297)
T COG4785 239 TYFYLGKYYLS----LGDLDEATALFKLAVANN-VYNFVEHRYA 277 (297)
T ss_pred HHHHHHHHHhc----cccHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 34444444444 799999999998877776 7775544443
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=56.58 E-value=1.5e+02 Score=26.55 Aligned_cols=170 Identities=11% Similarity=-0.007 Sum_probs=90.3
Q ss_pred hccHhhHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-
Q 010739 169 ERGVGDVVDLLVDMDCVGLKPG-FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV- 246 (502)
Q Consensus 169 ~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~- 246 (502)
..++..++. +.|+ ..+||-|---+...|+++.|.+.|+...+.+-. |+- ...|-.+
T Consensus 85 R~DftQaLa---------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-----y~Y--------a~lNRgi~ 142 (297)
T COG4785 85 RNDFSQALA---------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNY--------AHLNRGIA 142 (297)
T ss_pred hhhhhhhhh---------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-----chH--------HHhcccee
Confidence 356666665 3444 357888888888999999999999998876622 111 2222222
Q ss_pred ---hCcHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739 247 ---EGKYVDAIKLVIHLRES-GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL 321 (502)
Q Consensus 247 ---~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~ 321 (502)
-|++.-|.+=|-..-+. .-.|=...|.-++. +. -++.+|..-+.+ +--..|..-|...++..|.- =..
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k-~dP~~A~tnL~q---R~~~~d~e~WG~~iV~~yLgkiS~ 215 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QK-LDPKQAKTNLKQ---RAEKSDKEQWGWNIVEFYLGKISE 215 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hh-CCHHHHHHHHHH---HHHhccHhhhhHHHHHHHHhhccH
Confidence 38888888766665544 22222222222221 11 345555432222 11122333343345555443 222
Q ss_pred HhHHHHHHHHHHcCCC-----CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010739 322 ADGSRLSSWAIQEGGS-----SLYGVVHERLLAMYICAGRGLEAERQLWEMKLV 370 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (502)
+.+ |++....... ..-..||--+-.-+...|+.++|..+|+-....
T Consensus 216 e~l---~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 216 ETL---MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHH---HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 222 2222221111 111246667777777788888888888876643
No 318
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=56.21 E-value=2.1e+02 Score=28.22 Aligned_cols=267 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred HhhhhhhhhhhhccHhhHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCC
Q 010739 158 MCSWVKKYIEEERGVGDVVDLLVDMDCVG---LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQG 234 (502)
Q Consensus 158 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~ 234 (502)
+| +.|+....+.+|+...+.| +..=...|.-|-++|.-.+|+++|++.-..=
T Consensus 27 Lc--------k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hD----------------- 81 (639)
T KOG1130|consen 27 LC--------KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHD----------------- 81 (639)
T ss_pred HH--------hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhh-----------------
Q ss_pred CCchHHHHHHHHhCcHHHHHH---HHHHHHHcCCCCCHhHHHHHHHHHHhc-cccHHHHHHHHHHHHHcCCCCchhchHH
Q 010739 235 GPTGYLAWKMMVEGKYVDAIK---LVIHLRESGLKPEVYSYLIALTAVVKE-LNEFGKALRKLKGYVRAGSIAELDGKNL 310 (502)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~a~~---~~~~m~~~g~~p~~~ty~~li~~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 310 (502)
+...-.+..+..+|.. +=+.++-.|---+..|+.-----+++. |.++.++..++
T Consensus 82 -----ltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlY----------------- 139 (639)
T KOG1130|consen 82 -----LTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALY----------------- 139 (639)
T ss_pred -----HHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHh-----------------
Q ss_pred HHHHHHhc-Cc--------------------HHhHHHHH----HHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHH
Q 010739 311 GLIEKYQS-DL--------------------LADGSRLS----SWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLW 365 (502)
Q Consensus 311 ~li~~~~~-g~--------------------~~~a~~~~----~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 365 (502)
-|-+.|.. |+ ++.|.++| +-+...|....-...|..|-+.|.-.|+++.|+..-+
T Consensus 140 NlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~ 219 (639)
T KOG1130|consen 140 NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHK 219 (639)
T ss_pred hhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHH
Q ss_pred HHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHHhCCCHHHHHHHHH
Q 010739 366 EMKLV-----GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW-----LLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 366 ~m~~~-----g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~l~~ 435 (502)
.=.+- .-......+..+-.++.-.|+++.|.+.++.-...-+..-..+..+ |-..|.-..++++|+..+.
T Consensus 220 ~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 220 LRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----CCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhh
Q 010739 436 KMLD-----LGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKR 475 (502)
Q Consensus 436 ~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~ 475 (502)
+-+. ....-....+.+|-.++.. -|.-+.|+.+.+.
T Consensus 300 rHLaIAqeL~DriGe~RacwSLgna~~a----lg~h~kAl~fae~ 340 (639)
T KOG1130|consen 300 RHLAIAQELEDRIGELRACWSLGNAFNA----LGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh----hhhHHHHHHHHHH
No 319
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.60 E-value=38 Score=26.39 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 010739 118 LVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVS 156 (502)
Q Consensus 118 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~ 156 (502)
++|+.+.+.... ++|++++++|.+.|..+...-+.|-.
T Consensus 66 tViD~lrRC~T~-EEALEVInylek~GEIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTD-EEALEVINYLEKRGEITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcH-HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 677888888888 89999999999999777766555544
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.23 E-value=38 Score=19.30 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 413 TLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
+|..+-..|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455667778888888888888887654
No 321
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.95 E-value=1.7e+02 Score=26.61 Aligned_cols=138 Identities=17% Similarity=0.114 Sum_probs=77.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH------------HHcCCCCCHHHHHHHH
Q 010739 351 YICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI------------EVMNSLCKKKTLSWLL 418 (502)
Q Consensus 351 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m------------~~~~~~p~~~~~~~li 418 (502)
|.+..+.+---++.+-.+..++.-+..-..+++ +-..|+..+|...++.- .+---.|.......++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344333333334444444455554444444443 23356666666655322 1111267777777787
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC-------chhHHHHHHH
Q 010739 419 RGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL-------IGPCLVYLYI 491 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~li~~y~ 491 (502)
..+. .+++++|.+.+.++-+.|+.|.... +.+...+-. -++.+.+++ +.+.+.|+ -.+++++.++
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K~-----~~~~E~~rl-E~ikeig~thmrI~eGv~s~LQl~g 318 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVVKN-----MDVAESLRL-EFIKEIGLTHMRILEGVNSLLQLSG 318 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHh-----ccHHHHHHH-HHHHHHhhHHhHHHhhHhHHHHHHH
Confidence 7654 5699999999999999999987654 455566532 335565543 33333342 1355666555
Q ss_pred hhcchhh
Q 010739 492 KKYKLWI 498 (502)
Q Consensus 492 ~~g~~~~ 498 (502)
---+++.
T Consensus 319 lla~l~~ 325 (333)
T KOG0991|consen 319 LLAKLCK 325 (333)
T ss_pred HHHHHHH
Confidence 4444443
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.90 E-value=1.9e+02 Score=27.19 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH--------------------------HCCCCCCH
Q 010739 323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK--------------------------LVGKEADG 376 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------------------------~~g~~p~~ 376 (502)
.|+++|..++.+.-.+ ++-+.+|.++....+..+|...++... -.+.+.|.
T Consensus 151 KA~ELFayLv~hkgk~---v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 151 KALELFAYLVEHKGKE---VTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred HHHHHHHHHHHhcCCc---ccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Q ss_pred HHHHHHH-HHHHhcCChhHHHHHHHHH----------------HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 377 DLYDIVL-AICASQNEGSAVSRLLSRI----------------EVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 377 ~t~~~li-~~~~~~~~~~~a~~l~~~m----------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
.-|-..+ ..-..+-.++++.++.... ++.-...-..+++..-+.|..+|.+.+|.++.++.+.
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q ss_pred CCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739 440 LGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 440 ~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
-. +.+...+-.++..+.. -|+-.++.+-++.+.+
T Consensus 308 ld-pL~e~~nk~lm~~la~----~gD~is~~khyerya~ 341 (361)
T COG3947 308 LD-PLSEQDNKGLMASLAT----LGDEISAIKHYERYAE 341 (361)
T ss_pred cC-hhhhHHHHHHHHHHHH----hccchhhhhHHHHHHH
No 323
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.30 E-value=1.8e+02 Score=27.13 Aligned_cols=85 Identities=9% Similarity=-0.088 Sum_probs=49.1
Q ss_pred HHHHhc-CcHHhHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----
Q 010739 313 IEKYQS-DLLADGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI----- 385 (502)
Q Consensus 313 i~~~~~-g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~----- 385 (502)
|.+++. +++.+++.-.-.--+.. .-++. ....-|--|.|.|++..+.++-.......-.-+...|.++...
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 556777 77777766332211111 22223 4455566677888888877777777765433344446666543
Q ss_pred HHhcCChhHHHHHH
Q 010739 386 CASQNEGSAVSRLL 399 (502)
Q Consensus 386 ~~~~~~~~~a~~l~ 399 (502)
+.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 34457777776665
No 324
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.64 E-value=3.5e+02 Score=29.64 Aligned_cols=228 Identities=10% Similarity=-0.017 Sum_probs=121.3
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH------hCcHHHHHHHHHHHHHc----CCCCCHhH
Q 010739 202 WEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV------EGKYVDAIKLVIHLRES----GLKPEVYS 271 (502)
Q Consensus 202 ~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~------~g~~~~a~~~~~~m~~~----g~~p~~~t 271 (502)
.-..++++|..++++....--.|+..--.. -..-|+.++ .|++++|.++-+.-... -..+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~------l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGD------LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhh------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 346789999999998875543433211111 002333333 48999999888776654 23445566
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchH--HHHHHH--Hhc-Cc--HHhHHHHHHHHHHcC-----CCCc
Q 010739 272 YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKN--LGLIEK--YQS-DL--LADGSRLSSWAIQEG-----GSSL 339 (502)
Q Consensus 272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~~li~~--~~~-g~--~~~a~~~~~~m~~~~-----~~~~ 339 (502)
+..+..+..-. |++++|..+..+-.+.--.-++..+. +.++.+ +.. |. ..+.+..|....... ....
T Consensus 500 ~sv~~~a~~~~-G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 500 LSVLGEAAHIR-GELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhHHHHHh-chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 66666777666 78999988876664432233333332 022222 333 63 334444444333221 2112
Q ss_pred hHhHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-H
Q 010739 340 YGVVHERLLAMYIC-AGRGLEAERQLWEMKLVGKEADGDLYD--IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL-S 415 (502)
Q Consensus 340 ~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~-~ 415 (502)
-..++..+..++.+ .+...+|..-++--......|-...+. .|.......|+++.|...++++......+....| .
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 22455556666655 222223333333222223333333333 4557788889999999999888765544431111 1
Q ss_pred H---HHH--HHHhCCCHHHHHHHHHH
Q 010739 416 W---LLR--GYIKGGHINDAAETLTK 436 (502)
Q Consensus 416 ~---li~--~~~~~g~~~~A~~l~~~ 436 (502)
+ .+. .....|+.+.|.....+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 222 23356787777766665
No 325
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.05 E-value=1.8e+02 Score=26.20 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 344 HERLLAMYIC--AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 344 ~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
|...+.||.. .+++++|.+++ -.-.+.|+-... ++.++...|+.+.|..+++.+.-....+ .....++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL---SHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccccccccHHHHHHH
Q 010739 422 IKGGHINDAAETLTKMLDLGLYPEYM---DRVAVLQGLRKRIQQSGNVEAYLNL 472 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~~~~~a~~~ 472 (502)
..++.+.+|+.+-+. .++.. .+..++..|.......+.+++-+.+
T Consensus 151 La~~~v~EAf~~~R~------~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 LANGLVTEAFSFQRS------YPDELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHcCCHHHHHHHHHh------CchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=51.51 E-value=27 Score=19.64 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 416 WLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 416 ~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
.+-.+|.+.|+.++|.+.|++.++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455666778888888888877653
No 327
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.30 E-value=31 Score=32.23 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV 382 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 382 (502)
-||..|..-.+.|++++|+.+++|.++.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 5677777788888888888888888877776555555443
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.73 E-value=1.1e+02 Score=27.25 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCCCHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKPGFSM 193 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~ 193 (502)
.+.-++.+.+.+.. .+++...+.-.+....|...-..+++.+| -.|++++|..-++-.-+.. ..+-..+
T Consensus 4 l~~t~seLL~~~sL-~dai~~a~~qVkakPtda~~RhflfqLlc--------vaGdw~kAl~Ql~l~a~l~p~~t~~a~l 74 (273)
T COG4455 4 LRDTISELLDDNSL-QDAIGLARDQVKAKPTDAGGRHFLFQLLC--------VAGDWEKALAQLNLAATLSPQDTVGASL 74 (273)
T ss_pred hHHHHHHHHHhccH-HHHHHHHHHHHhcCCccccchhHHHHHHh--------hcchHHHHHHHHHHHhhcCcccchHHHH
Confidence 34456677777888 78998887777776457788888999999 8999999998776554432 4455677
Q ss_pred HHHHHHH
Q 010739 194 IEKVISL 200 (502)
Q Consensus 194 y~~li~~ 200 (502)
|..+|++
T Consensus 75 yr~lir~ 81 (273)
T COG4455 75 YRHLIRC 81 (273)
T ss_pred HHHHHHH
Confidence 8888765
No 329
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.38 E-value=1.8e+02 Score=27.69 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHHHcC
Q 010739 206 KKERAVLFVKAVLSRG 221 (502)
Q Consensus 206 ~~~~A~~l~~~m~~~~ 221 (502)
-+.+|+++|++..+.+
T Consensus 231 Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 231 TIVDAERLFKQALKAG 246 (556)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3456677776665443
No 330
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=49.23 E-value=3.4e+02 Score=28.48 Aligned_cols=66 Identities=6% Similarity=-0.046 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 010739 146 VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAY 224 (502)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 224 (502)
+....|+.+++ +. +.=+.+.-..+++++.. .+ ...+..++++....|-.....-+.+.+....+.+
T Consensus 308 ~~~~~f~~lv~-~l--------R~~~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~ 373 (574)
T smart00638 308 PAAAKFLRLVR-LL--------RTLSEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP 373 (574)
T ss_pred chHHHHHHHHH-HH--------HhCCHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH
Confidence 35567888888 55 67788888888888754 11 6789999999999999887777777776655543
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=48.91 E-value=61 Score=30.90 Aligned_cols=78 Identities=8% Similarity=-0.062 Sum_probs=40.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739 350 MYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (502)
-|.+.|++++|.+.|..-. .+.| |.+++..-..+|.+...+-.|+.=.......+ ...+.+|.+.+...
T Consensus 106 ~yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHHH
Confidence 3566777777777776543 3445 66666666666666665555443332222211 12455666555444
Q ss_pred HHHHHHHHH
Q 010739 429 DAAETLTKM 437 (502)
Q Consensus 429 ~A~~l~~~m 437 (502)
+++....+.
T Consensus 176 ~~Lg~~~EA 184 (536)
T KOG4648|consen 176 ESLGNNMEA 184 (536)
T ss_pred HHHhhHHHH
Confidence 444444443
No 332
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.64 E-value=19 Score=29.10 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=27.5
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLY 201 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 201 (502)
..|.-..|-.+|+.|.+.|-+||. |+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 678888999999999999999985 88888754
No 333
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.53 E-value=29 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=19.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 010739 417 LLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
+|.||...|++++|.++++++..
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999888754
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.83 E-value=2.3e+02 Score=29.52 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCChHHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEV 136 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~ 136 (502)
-+.+.+.+.+.|.. ++|+++
T Consensus 617 rt~va~Fle~~g~~-e~AL~~ 636 (794)
T KOG0276|consen 617 RTKVAHFLESQGMK-EQALEL 636 (794)
T ss_pred hhhHHhHhhhccch-Hhhhhc
Confidence 77888888888888 788875
No 335
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.70 E-value=2.4e+02 Score=26.37 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=92.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH-------HHHHHHHHhccccHHHHHHHHHHH----HHcCCCCchhch
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY-------LIALTAVVKELNEFGKALRKLKGY----VRAGSIAELDGK 308 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty-------~~li~~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~ 308 (502)
+..+..+.+++++|+..+.+....|+..|..+. ..+...|... |+...--+.+... ....-....-+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~-g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSK-GDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhc-CCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 567788889999999999999999998887654 4466677777 4444333333222 111111122222
Q ss_pred HHHHHHHHhc--CcHHhHHHHHHHHHHcCCCCch----HhHHHHHHHHHHHcCChHHHHHHHH----HHHHCCCCCCHHH
Q 010739 309 NLGLIEKYQS--DLLADGSRLSSWAIQEGGSSLY----GVVHERLLAMYICAGRGLEAERQLW----EMKLVGKEADGDL 378 (502)
Q Consensus 309 ~~~li~~~~~--g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~----~m~~~g~~p~~~t 378 (502)
. .||..+.. ..+++..++....++....... ...=.-+|..+.+.|++.+|+.+.+ ++++..-+|+..+
T Consensus 88 r-tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 88 R-TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred H-HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 2 46666544 6777777776555444322211 1233457889999999999997654 5555566676655
Q ss_pred HHHHH-HHHHhcCChhH
Q 010739 379 YDIVL-AICASQNEGSA 394 (502)
Q Consensus 379 ~~~li-~~~~~~~~~~~ 394 (502)
...+= .+|-..+++..
T Consensus 167 vhllESKvyh~irnv~K 183 (421)
T COG5159 167 VHLLESKVYHEIRNVSK 183 (421)
T ss_pred hhhhhHHHHHHHHhhhh
Confidence 54443 34444444443
No 336
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.31 E-value=3.9e+02 Score=28.72 Aligned_cols=208 Identities=13% Similarity=0.008 Sum_probs=115.4
Q ss_pred HHHHHHHHcCCCh--HHHHHHHHHHHHcC-CCChH---HHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCH
Q 010739 118 LVLVYFSQEGRDS--WCALEVFEWLKKEN-RVDNE---TMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGF 191 (502)
Q Consensus 118 ~ll~~~~~~~~~~--~~a~~~~~~m~~~~-~~~~~---~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 191 (502)
.+++-+.+++... ++-...+++|+.+- .|++- +...++-.+- ...+++..+++.+.+++. ||.
T Consensus 165 kflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyR--------DvQdY~amirLVe~Lk~i---P~t 233 (1226)
T KOG4279|consen 165 KFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYR--------DVQDYDAMIRLVEDLKRI---PDT 233 (1226)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhc--------cccchHHHHHHHHHHHhC---cch
Confidence 3444444443331 33445678887665 56543 3333333355 678889999999988875 432
Q ss_pred ----------HHHHHHHHHHHhcCcHHHHHHHHHHHHHcC--CCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHH
Q 010739 192 ----------SMIEKVISLYWEMEKKERAVLFVKAVLSRG--IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIH 259 (502)
Q Consensus 192 ----------~~y~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 259 (502)
..|.-.++-=-+-||-++|+...-.|.++. +.||...... +-....++..++-.++..+.|.+.|++
T Consensus 234 ~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~G-RIYKDmF~~S~ytDa~s~~~a~~Wyrk 312 (1226)
T KOG4279|consen 234 LKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCG-RIYKDMFIASNYTDAESLNHAIEWYRK 312 (1226)
T ss_pred hhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeec-hhhhhhhhccCCcchhhHHHHHHHHHH
Confidence 123334444456788899998877776543 7788755443 000000122223334677788888876
Q ss_pred HHHcCCCCCHh---HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC
Q 010739 260 LRESGLKPEVY---SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG 335 (502)
Q Consensus 260 m~~~g~~p~~~---ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~ 335 (502)
--+ ++|+.. .+.+|+.+-++. ++...+ |..-|+ .|-...++ |.++.....|
T Consensus 313 aFe--veP~~~sGIN~atLL~aaG~~---Fens~E----lq~Igm---------kLn~LlgrKG~leklq~YW------- 367 (1226)
T KOG4279|consen 313 AFE--VEPLEYSGINLATLLRAAGEH---FENSLE----LQQIGM---------KLNSLLGRKGALEKLQEYW------- 367 (1226)
T ss_pred Hhc--cCchhhccccHHHHHHHhhhh---ccchHH----HHHHHH---------HHHHHhhccchHHHHHHHH-------
Confidence 543 567654 455666665554 443332 222222 34445677 8888877777
Q ss_pred CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 336 GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
|+.+| +.+-.-++++.+|..--+.|-+
T Consensus 368 ----dV~~y---~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 368 ----DVATY---FEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred ----hHHHh---hhhhhhccCHHHHHHHHHHHhc
Confidence 33343 3333445666666666666653
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.70 E-value=3.6e+02 Score=28.15 Aligned_cols=115 Identities=15% Similarity=-0.025 Sum_probs=64.1
Q ss_pred CcHHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHHhcc---c-cHHHHHHHHHHHHHcCCCCchhchHHHHHHHH
Q 010739 248 GKYVDAIKLVIHLRE-------SGLKPEVYSYLIALTAVVKEL---N-EFGKALRKLKGYVRAGSIAELDGKNLGLIEKY 316 (502)
Q Consensus 248 g~~~~a~~~~~~m~~-------~g~~p~~~ty~~li~~~~~~~---~-~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~ 316 (502)
.+.+.|+.+|+.... .| +.....-+-.+|.+.. . +...|..++..-.+.|.. +... .+-..|
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~---~lg~~~ 335 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQY---LLGVLY 335 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHH---HHHHHH
Confidence 588888888888866 44 3334455556666541 2 567788877776666653 3332 233444
Q ss_pred hcC----cHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHH--HcCChHHHHHHHHHHHHCC
Q 010739 317 QSD----LLADGSRLSSWAIQEGGSSLYGVVHERLLAMYI--CAGRGLEAERQLWEMKLVG 371 (502)
Q Consensus 317 ~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g 371 (502)
..| +...|.+.|......|.... .-+-+++.... -..+.+.|..++.+.-+.|
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A--~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILA--IYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHH--HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 443 36688888877777775541 12211111111 1334555666666555555
No 338
>PHA03100 ankyrin repeat protein; Provisional
Probab=46.54 E-value=2.9e+02 Score=28.00 Aligned_cols=233 Identities=13% Similarity=0.004 Sum_probs=104.8
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH--HHHHHH-----HHhccccHHHHHHHHHHHHHcCCCCchh---chH
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY--LIALTA-----VVKELNEFGKALRKLKGYVRAGSIAELD---GKN 309 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty--~~li~~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~ 309 (502)
.++.++..|+.+- ++.+.+.|..|+.... .+.+.. .+.. +..+- ++.+.+.|..++.. ..+
T Consensus 38 ~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~-~~~~i----v~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 38 PLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLT-DVKEI----VKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh-chHHH----HHHHHHCCCCCCCCCCCCCc
Confidence 4555666677554 4444556777765321 233444 3444 33332 33445666654332 222
Q ss_pred HHHHHHHh-c-CcHHhHHHHHHHHHHcCCCC--chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHHH
Q 010739 310 LGLIEKYQ-S-DLLADGSRLSSWAIQEGGSS--LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLY--DIVL 383 (502)
Q Consensus 310 ~~li~~~~-~-g~~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~li 383 (502)
.|..+.. . |+.+-+..++ +.|... .+ ..-.+.+...++.|. .-.++++.+.+.|..++...- .+.+
T Consensus 109 -pL~~A~~~~~~~~~iv~~Ll----~~g~~~~~~~-~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL 180 (480)
T PHA03100 109 -PLLYAISKKSNSYSIVEYLL----DNGANVNIKN-SDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPL 180 (480)
T ss_pred -hhhHHHhcccChHHHHHHHH----HcCCCCCccC-CCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHH
Confidence 3444441 4 6665555444 344221 11 112344555666662 123345555666776654322 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHH
Q 010739 384 AICASQNEGSAVSRLLSRIEVMNSLCKKK--------TLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM---DRVAV 452 (502)
Q Consensus 384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~l 452 (502)
...+..|+.+-+..+ .+.|..++.. .+...+...+..|+ ...++.+.+.+.|..++.. -.+.|
T Consensus 181 ~~A~~~~~~~iv~~L----l~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL 254 (480)
T PHA03100 181 HIAVEKGNIDVIKFL----LDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPL 254 (480)
T ss_pred HHHHHhCCHHHHHHH----HHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 555556665554433 3445444322 11333444455555 1123444445556554322 23445
Q ss_pred HHHHHccccccccHHHHHHHHhhhhhcCC---chhHHHHHHHhhcchhhhh
Q 010739 453 LQGLRKRIQQSGNVEAYLNLCKRLSDTSL---IGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 453 l~~~~~~~~~~~~~~~a~~~~~~m~~~~~---~~~~li~~y~~~g~~~~~~ 500 (502)
..|+. .|..+-...+++.-.+... -..+-++..++.|..+.++
T Consensus 255 ~~A~~-----~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~ 300 (480)
T PHA03100 255 HYAVY-----NNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFK 300 (480)
T ss_pred HHHHH-----cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHH
Confidence 55544 3565555555443322111 1122334445555555554
No 339
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.41 E-value=93 Score=25.02 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010739 323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWE 366 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 366 (502)
++.++|..|...++-..-...|..--..+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666665554445565555555666666666666653
No 340
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.40 E-value=2.4e+02 Score=27.02 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=54.9
Q ss_pred CcHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhcc-ccHHHHHHHHHHHHH-----cCCCCchhchHHHHHHHH-h
Q 010739 248 GKYVDAIKLVIHLRES---GLKPEVYSYLIALTAVVKEL-NEFGKALRKLKGYVR-----AGSIAELDGKNLGLIEKY-Q 317 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~---g~~p~~~ty~~li~~~~~~~-~~~~~a~~~~~~m~~-----~g~~p~~~~~~~~li~~~-~ 317 (502)
++.++|+++++++.+. --.|+.+.|...-.+-++.. ||..++.+++++..+ .|++|++++--..+-.-| .
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK 168 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence 6889999999999875 34678888866655555543 899999999888866 678776665321233334 4
Q ss_pred c-CcHHhHHH
Q 010739 318 S-DLLADGSR 326 (502)
Q Consensus 318 ~-g~~~~a~~ 326 (502)
+ |++....+
T Consensus 169 ~~~d~a~yYr 178 (380)
T KOG2908|consen 169 KIGDFASYYR 178 (380)
T ss_pred HHHhHHHHHH
Confidence 4 87776655
No 341
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.23 E-value=1.8e+02 Score=26.06 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA---DGDLYD--IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW 416 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~--~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~ 416 (502)
.-+|.||--|.-...+.+|-+.|. .+.|+.| |..+++ .-|......|+++.|.+......-.-+.-|...+-+
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~ 104 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFH 104 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHH
Confidence 356666666666555555655554 3446655 444443 344666778888888888777665555556555555
Q ss_pred HHH----HHHhCCCHHHHHHHHHH
Q 010739 417 LLR----GYIKGGHINDAAETLTK 436 (502)
Q Consensus 417 li~----~~~~~g~~~~A~~l~~~ 436 (502)
|.. =..+.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333 24567777777777765
No 342
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=45.96 E-value=73 Score=31.97 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=45.1
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhH----HHHHHHHH
Q 010739 204 MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYS----YLIALTAV 279 (502)
Q Consensus 204 ~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----y~~li~~~ 279 (502)
..++++|+++.++-++.+-..++ |-...|.++|.++.+.|+.||..| ....+++|
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SI---------------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY 265 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISI---------------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGY 265 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE---------------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCccccc
Confidence 45788888888888776633221 222456778888888888888754 33345567
Q ss_pred HhccccHHHHHHHHH
Q 010739 280 VKELNEFGKALRKLK 294 (502)
Q Consensus 280 ~~~~~~~~~a~~~~~ 294 (502)
+-.|-.++++.++..
T Consensus 266 ~P~g~t~ee~~~lr~ 280 (545)
T TIGR01228 266 IPEGYTVEDADKLRQ 280 (545)
T ss_pred CCCCCCHHHHHHHHH
Confidence 777556777766543
No 343
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.57 E-value=1.5e+02 Score=23.86 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLW 365 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 365 (502)
++..++|..|...++-..-...|..--.-+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555666666666554444455555555555666666666654
No 344
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.46 E-value=1.8e+02 Score=25.27 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739 417 LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR 457 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 457 (502)
.+..|.+.|.+++|.+++++... .|+..+...-+....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II 154 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHH
Confidence 45567888888888888888776 355555544444443
No 345
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.12 E-value=3e+02 Score=26.45 Aligned_cols=164 Identities=5% Similarity=-0.149 Sum_probs=101.6
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
..|+.++|...++++.+. ++.|...++-.=++|.-.|+.+.-...++.....- .||...|.- +.+...++....
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sY----v~GmyaFgL~E~ 188 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSY----VHGMYAFGLEEC 188 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHH----HHHHHHhhHHHh
Confidence 578999999999999875 77899999999999999999998888888876441 233322221 122244555557
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHH---HcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYV---RAGSIAELDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~~~~~~li~~~~~-g~~~~ 323 (502)
|-+++|.+.-++-.+- -+-|...-.++-+.+--. ++..++.+.+.+-. +.+...-.+.|. ..--.+.. +.++.
T Consensus 189 g~y~dAEk~A~ralqi-N~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~mlasHNyW-H~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQI-NRFDCWASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWMLASHNYW-HTALFHIEGAEYEK 265 (491)
T ss_pred ccchhHHHHHHhhccC-CCcchHHHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhHHHhhhhH-HHHHhhhcccchhH
Confidence 9999999877664433 122445555555555556 67777766544331 112112223332 12223445 89999
Q ss_pred HHHHHHHHHHcCCCCch
Q 010739 324 GSRLSSWAIQEGGSSLY 340 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~ 340 (502)
|+++|+.-.-......|
T Consensus 266 aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 266 ALEIYDREIWKRLEKDD 282 (491)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999764444333334
No 346
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.98 E-value=2.8e+02 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=36.4
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR 220 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 220 (502)
..+++.+|...|.......-. +...--.+..+|...|+.+.|..+++.+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 677888888877776664322 3445566778888888888888888777543
No 347
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=43.95 E-value=1.7e+02 Score=23.57 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHH---hhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIM---CSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG 190 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~---~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 190 (502)
.+...++.+.+.... -.++++...+.... .|..+ .+..|+.. |...++-....+.+.-.-.+++.+.+.|+.-.
T Consensus 20 ~~~~yld~lv~~~~s-l~s~EvVn~L~~~~~~p~ef-l~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~ 97 (126)
T PF10155_consen 20 NFKEYLDVLVSMDMS-LHSMEVVNRLTTSFSLPQEF-LHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDV 97 (126)
T ss_pred hHHHHHHHHHcCCCc-hhHHHHHHHHHcCCCCcHHH-HHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCch
Confidence 367788888888888 79999999998877 44443 33333323 32222222246667777888899999998666
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
...+.-+=..|.+-.+..+|..+|+-++
T Consensus 98 ~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 98 EDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 6677777777788889999999998765
No 348
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.87 E-value=1.1e+02 Score=23.89 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 413 TLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
-|..|+.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578899999999999999999998877
No 349
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.70 E-value=1.3e+02 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 398 LLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 398 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
+|+.++..++.|.-..|.|+.-.+.+.=.+.+++.+++.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444445555555554444444444444555554443
No 350
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.64 E-value=1e+02 Score=26.76 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 408 LCKKKTLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
.|+..+|..++..+...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555444
No 351
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.58 E-value=1.1e+02 Score=21.02 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=35.9
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH-----HhcCcHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLY-----WEMEKKERAVLFV 214 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~-----~~~g~~~~A~~l~ 214 (502)
+.|++-+|.++++++-...-.+....|..||... .+.|+...|.+++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 7899999999999988754445667788888765 4689999888775
No 352
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.47 E-value=1.6e+02 Score=22.93 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHHcCCC-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 010739 127 GRDSWCALEVFEWLKKENRV-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME 205 (502)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 205 (502)
... ++|..+.+|+...+.- ..++.-.+ ..+. +.|++++|+.. ....-.||...|-+|-. .|.|
T Consensus 20 HcH-~EA~tIa~wL~~~~~~~E~v~lIr~-~sLm--------NrG~Yq~ALl~----~~~~~~pdL~p~~AL~a--~klG 83 (116)
T PF09477_consen 20 HCH-QEANTIADWLEQEGEMEEVVALIRL-SSLM--------NRGDYQEALLL----PQCHCYPDLEPWAALCA--WKLG 83 (116)
T ss_dssp T-H-HHHHHHHHHHHHTTTTHHHHHHHHH-HHHH--------HTT-HHHHHHH----HTTS--GGGHHHHHHHH--HHCT
T ss_pred HHH-HHHHHHHHHHHhCCcHHHHHHHHHH-HHHH--------hhHHHHHHHHh----cccCCCccHHHHHHHHH--Hhhc
Confidence 345 7999999999988842 33333322 3355 89999999331 12335789888876643 5899
Q ss_pred cHHHHHHHHHHHHHcC
Q 010739 206 KKERAVLFVKAVLSRG 221 (502)
Q Consensus 206 ~~~~A~~l~~~m~~~~ 221 (502)
--+++...+..+..+|
T Consensus 84 L~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 84 LASALESRLTRLASSG 99 (116)
T ss_dssp -HHHHHHHHHHHCT-S
T ss_pred cHHHHHHHHHHHHhCC
Confidence 9999999999887666
No 353
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.44 E-value=42 Score=23.06 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=18.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
.+|.+|.+.|++++|.+..+++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 468888899999999988887764
No 354
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=42.36 E-value=1.2e+02 Score=30.32 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC------CC---CCCHHHHHHHHHHH
Q 010739 131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV------GL---KPGFSMIEKVISLY 201 (502)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~------g~---~p~~~~y~~li~~~ 201 (502)
++-.++++.+.+.|.+|.-+ .-++.++ +.++++.|.+.+++-.+. |+ ......+..|+.+.
T Consensus 28 ~e~~~~l~~l~~~g~~dvl~--ltiDsyt--------r~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~ 97 (428)
T cd00245 28 EEHIELLRTLQEEGAADVLP--LTIDSYT--------RVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGV 97 (428)
T ss_pred HHHHHHHHHHHhcCCCCeec--cccccch--------hhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhC
Confidence 56667777787777555543 3467788 999999999998886432 32 22334555666554
Q ss_pred -----HhcCcHHHHHHHHHHHHHcCCCCC---CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739 202 -----WEMEKKERAVLFVKAVLSRGIAYA---EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL 273 (502)
Q Consensus 202 -----~~~g~~~~A~~l~~~m~~~~~~p~---~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 273 (502)
.|+|- .++..+++-+...|+.-. ..+|+.-.+.... +- .. -..|+.+.++.....+.|+..+..+|.
T Consensus 98 ~~PlqvRhGt-~d~~~l~e~~~a~g~~a~egg~isy~~py~k~~~-Le-~s--i~~wqy~~rl~~~y~e~gv~in~E~fg 172 (428)
T cd00245 98 DFPVQVRHGT-PDARLLAEIAIASGFDATEGGPISYNLPYSKNVP-LE-KS--IENWQYCDRLVGFYEENGVPINREPFG 172 (428)
T ss_pred CCCEeeccCC-ccHHHHHHHHHHhCcccccccceeeccccCCCCC-HH-HH--HHHHHHHHHHHHHHHhcCceecccCCc
Confidence 45554 347778887777775432 2444430000000 00 00 012333344444556679999999998
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhch
Q 010739 274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGK 308 (502)
Q Consensus 274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 308 (502)
.+...++-- .+.-|..+++.+...|...+..++
T Consensus 173 ~l~~~l~pp--tla~aiaylea~la~glgV~~lS~ 205 (428)
T cd00245 173 PLTGTLVPP--SILIAIQILEALLAAEQGVKSISV 205 (428)
T ss_pred CcccCcCCc--HHHHHHHHHHHHHHccCCCCEEEE
Confidence 877677766 589999999999777776666554
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=41.97 E-value=52 Score=31.33 Aligned_cols=48 Identities=13% Similarity=-0.063 Sum_probs=24.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739 386 CASQNEGSAVSRLLSRIEVMNSLC-KKKTLSWLLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 386 ~~~~~~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~ 435 (502)
|.++|.+++|...+..-.. ..| |.++|.-=..+|.+..++..|..=..
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 5566666666655543222 223 55555555556666666555544333
No 356
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=41.36 E-value=2.4e+02 Score=24.61 Aligned_cols=95 Identities=16% Similarity=0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhC
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS-LCKKKTLSWLLRGYIKG 424 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-~p~~~~~~~li~~~~~~ 424 (502)
.|-.++...|+..+|...|++-...-+.-|....-.+-.+....++.-.|..+++.+-+... ..+..+--.+-+.|...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 34555555666666666665555433444444444444555555555555555555544331 00111222344555555
Q ss_pred CCHHHHHHHHHHHHHC
Q 010739 425 GHINDAAETLTKMLDL 440 (502)
Q Consensus 425 g~~~~A~~l~~~m~~~ 440 (502)
|+.++|..-|+...+.
T Consensus 174 g~~a~Aesafe~a~~~ 189 (251)
T COG4700 174 GKYADAESAFEVAISY 189 (251)
T ss_pred CCchhHHHHHHHHHHh
Confidence 6666666666655544
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=41.11 E-value=3.1e+02 Score=27.69 Aligned_cols=118 Identities=10% Similarity=-0.087 Sum_probs=65.1
Q ss_pred ccHHHHHH-HHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHH
Q 010739 284 NEFGKALR-KLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAE 361 (502)
Q Consensus 284 ~~~~~a~~-~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (502)
|+.-.|-+ ++..+....-.|+.+.. .-..+.. |+++.+...+......-... + .+-.+++....+.|++++|.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l---~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~-~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQL---RSVIFSHLGYYEQAYQDISDVEKIIGTT-D-STLRCRLRSLHGLARWREAL 377 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHH---HHHHHHHhhhHHHHHHHhhchhhhhcCC-c-hHHHHHHHhhhchhhHHHHH
Confidence 45554443 44444544445555431 1122455 78888887765433222222 2 36677777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 010739 362 RQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS 407 (502)
Q Consensus 362 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~ 407 (502)
.+-+-|....++-.. ........--..|-++++...|+.....+.
T Consensus 378 s~a~~~l~~eie~~e-i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 378 STAEMMLSNEIEDEE-VLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccccCChh-heeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 888877766554222 222222222334666777777776655543
No 358
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.08 E-value=1.4e+02 Score=31.39 Aligned_cols=90 Identities=11% Similarity=0.074 Sum_probs=59.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhH------HHHHHHHHHHcCCCCCHHHHHHH
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLV--GKEADGDLYDIVLAICASQNEGSA------VSRLLSRIEVMNSLCKKKTLSWL 417 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~------a~~l~~~m~~~~~~p~~~~~~~l 417 (502)
+|+.+|..+|++.++..+++..... |-+.-...||..|..+.+.|.++- |.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999888765 444455677888888888887652 333444333 34477788877
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 010739 418 LRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 418 i~~~~~~g~~~~A~~l~~~m~ 438 (502)
+++-...-.-.-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776555333333334444443
No 359
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=40.74 E-value=1.4e+02 Score=21.64 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=43.7
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
+.|+++-...+++ .|...+. -+..+...+..|+.+ +++.+.+.|..++....+. .+ .+.-++..
T Consensus 6 ~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g-----~t-~L~~A~~~ 69 (89)
T PF12796_consen 6 QNGNLEILKFLLE----KGADINL--GNTALHYAAENGNLE----IVKLLLENGADINSQDKNG-----NT-ALHYAAEN 69 (89)
T ss_dssp HTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTS-----SB-HHHHHHHT
T ss_pred HcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCHH----HHHHHHHhcccccccCCCC-----CC-HHHHHHHc
Confidence 6677766666655 3333333 223555667778754 4444556777776542211 11 34445556
Q ss_pred CcHHHHHHHHHHHHHcCCCCCH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
|+.+ +++.+.+.|..|+.
T Consensus 70 ~~~~----~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 70 GNLE----IVKLLLEHGADVNI 87 (89)
T ss_dssp THHH----HHHHHHHTTT-TTS
T ss_pred CCHH----HHHHHHHcCCCCCC
Confidence 6644 55556666776653
No 360
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.59 E-value=87 Score=21.55 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=38.0
Q ss_pred HHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHH
Q 010739 124 SQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLL 179 (502)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~ 179 (502)
-..|++ .+|-++++.+=... .+....|..+|..+.+...- +.|+...|..++
T Consensus 10 ~n~g~f-~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~---~~gn~~gA~~l~ 62 (62)
T PF03745_consen 10 FNAGDF-FEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHL---RRGNPRGARRLL 62 (62)
T ss_dssp HHTT-H-HHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHH---HCTSHHHHHHHH
T ss_pred HcCCCH-HHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHH---HhCCHHHHHHhC
Confidence 346788 79999999986544 45777899999966655553 678888888764
No 361
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.22 E-value=4.4e+02 Score=27.23 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010739 410 KKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD 448 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 448 (502)
+......++.++.. |+.+.++.++++|.+.|..|....
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 34444445555544 788889999999999998876443
No 362
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.87 E-value=3.3e+02 Score=25.76 Aligned_cols=118 Identities=15% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHH-HHHHHcCCCCch--
Q 010739 265 LKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLS-SWAIQEGGSSLY-- 340 (502)
Q Consensus 265 ~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~-~~m~~~~~~~~~-- 340 (502)
++|+..+-...-..+..+| +.+-.++.+.-...|-..... ..|.+-..+ ..+++..... ++|.....|.+.
T Consensus 219 fPpnkrs~E~Fak~Ft~ag--L~elvey~~~q~~~~a~kElq---~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi 293 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAG--LKELVEYHRNQQSEGARKELQ---KELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVI 293 (412)
T ss_pred cCCcchhHHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEE
Confidence 5777777776666666663 222222111111111000011 134444555 5566665544 456666677654
Q ss_pred HhHHHHHHHHHHHcCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010739 341 GVVHERLLAMYICAGRGL-EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVS 396 (502)
Q Consensus 341 ~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 396 (502)
.+.|..++++---+.+-+ -|...++.+ .+|..|+.++|..|+.+...
T Consensus 294 ~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 294 GIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 346888887755443222 233334433 47999999999999988643
No 363
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=39.36 E-value=4.7e+02 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010739 411 KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM 447 (502)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 447 (502)
......|+.++.+ ++...++.++++|...|+.+...
T Consensus 246 ~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~ 281 (709)
T PRK08691 246 KQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNA 281 (709)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHH
Confidence 3344456666555 78888999999998888766543
No 364
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=38.75 E-value=2.7e+02 Score=24.38 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=8.1
Q ss_pred cCChhHHHHHHHHHH
Q 010739 389 QNEGSAVSRLLSRIE 403 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~ 403 (502)
.|+++.|.+.++-|.
T Consensus 134 ~~~~~~Ae~~~~~ME 148 (204)
T COG2178 134 KGSFEEAERFLKFME 148 (204)
T ss_pred hccHHHHHHHHHHHH
Confidence 355566655555443
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.34 E-value=1.6e+02 Score=25.60 Aligned_cols=54 Identities=11% Similarity=0.032 Sum_probs=38.8
Q ss_pred HcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 353 CAGRGLEAERQLWEMKLV-GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 353 ~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
...+.+......+...+. ...|+..+|..++.++...|+.++|.+..+++...-
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455555555444444333 578899999999999999999999988888776543
No 366
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=38.14 E-value=5.7e+02 Score=27.98 Aligned_cols=79 Identities=8% Similarity=0.152 Sum_probs=44.5
Q ss_pred HHHHHHHH-HcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC-------------CCCHHHHHHHH
Q 010739 134 LEVFEWLK-KEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL-------------KPGFSMIEKVI 198 (502)
Q Consensus 134 ~~~~~~m~-~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~~y~~li 198 (502)
.+.++... +.| ..+......+.+ .+ .|++..|+.++++....+- .+|...+..++
T Consensus 184 v~~L~~Il~~EgI~id~eAL~lIA~-~A---------~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll 253 (830)
T PRK07003 184 VSHLERILGEERIAFEPQALRLLAR-AA---------QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLL 253 (830)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH-Hc---------CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 33444433 234 456666665555 33 5777777777766543321 12333444555
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCC
Q 010739 199 SLYWEMEKKERAVLFVKAVLSRGIA 223 (502)
Q Consensus 199 ~~~~~~g~~~~A~~l~~~m~~~~~~ 223 (502)
+.+ ..|+..+++.+++++...|+.
T Consensus 254 ~aL-~~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 254 DAL-AAGDGPEILAVADEMALRSLS 277 (830)
T ss_pred HHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 543 347778888888888777743
No 367
>PHA02989 ankyrin repeat protein; Provisional
Probab=37.96 E-value=4.6e+02 Score=26.81 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.8
Q ss_pred HHHHHcCCCCCH
Q 010739 258 IHLRESGLKPEV 269 (502)
Q Consensus 258 ~~m~~~g~~p~~ 269 (502)
+.+.+.|..+|.
T Consensus 20 ~~LL~~GadvN~ 31 (494)
T PHA02989 20 EFLLRTGFDVNE 31 (494)
T ss_pred HHHHHcCCCccc
Confidence 334445555554
No 368
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=37.85 E-value=3.7e+02 Score=25.66 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=31.6
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR 220 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 220 (502)
+-|+++....+....... .++...|.++... +.|+.+++...++.....
T Consensus 10 rl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 10 RLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred hcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 677888765555544332 2356666666655 788888888887776543
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.79 E-value=1.3e+02 Score=21.99 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=22.9
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccccccccHHHHHHH
Q 010739 423 KGGHINDAAETLTKMLDLGLYPEY--MDRVAVLQGLRKRIQQSGNVEAYLNL 472 (502)
Q Consensus 423 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~~~~~a~~~ 472 (502)
...+.++|+..|...++.-..|.. .++..++.+++. .|+..+.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e----~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME----WGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 444555566655555544333221 245555555555 5555555443
No 370
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.78 E-value=3.8e+02 Score=25.80 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=7.7
Q ss_pred HhCCCHHHHHHHHHH
Q 010739 422 IKGGHINDAAETLTK 436 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~ 436 (502)
...+.++.|+++|++
T Consensus 258 iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDR 272 (491)
T ss_pred hcccchhHHHHHHHH
Confidence 344555555555554
No 371
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.75 E-value=5.2e+02 Score=27.38 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=94.8
Q ss_pred ccHHHHHHHHHHHHHc-CCCCc-----hhchHHHHHHHHhc--CcHHhHHHHHH-------HHHHcCCCCchHhHHHHH-
Q 010739 284 NEFGKALRKLKGYVRA-GSIAE-----LDGKNLGLIEKYQS--DLLADGSRLSS-------WAIQEGGSSLYGVVHERL- 347 (502)
Q Consensus 284 ~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~~li~~~~~--g~~~~a~~~~~-------~m~~~~~~~~~~~~~~~l- 347 (502)
+++..+...+.++.+. .-.|+ ...+...+...|.. |+++.|...|. .......+..+..++..+
T Consensus 375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LN 454 (608)
T PF10345_consen 375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALN 454 (608)
T ss_pred cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHH
Confidence 5788888888888432 11111 12222234444555 99999999997 333333444454444332
Q ss_pred ---HHHHHHcCChHH--HHHHHHHHHHC-CCC--CCHHHHHHHH-HHHHhcCCh--hHHHHHH-HHHHHc-CCCCCHHHH
Q 010739 348 ---LAMYICAGRGLE--AERQLWEMKLV-GKE--ADGDLYDIVL-AICASQNEG--SAVSRLL-SRIEVM-NSLCKKKTL 414 (502)
Q Consensus 348 ---i~~~~~~g~~~~--A~~l~~~m~~~-g~~--p~~~t~~~li-~~~~~~~~~--~~a~~l~-~~m~~~-~~~p~~~~~ 414 (502)
|.-+-.....++ +.++++.+... .-. .+..+++.++ .++...... .++...+ +.++.. ...-+....
T Consensus 455 l~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~ 534 (608)
T PF10345_consen 455 LAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLL 534 (608)
T ss_pred HHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHH
Confidence 111111222233 66777766542 222 2334444443 444333332 2333333 333333 111122222
Q ss_pred HH---HHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcc-ccccccHHHHHHHHhhh
Q 010739 415 SW---LLRGYIKGGHINDAAETLTKMLDLGLYP---EYMDRVAVLQGLRKR-IQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 415 ~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~-~~~~~~~~~a~~~~~~m 476 (502)
.. ++.+-.-.|+..+..+....-...--+. ....|..+..++..+ .+..|+.++|.....+.
T Consensus 535 ~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 535 AILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 21 3333333688877666555533322222 556677777777544 56678888887775443
No 372
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.59 E-value=3.3e+02 Score=25.00 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHH
Q 010739 414 LSWLLRGYIKGGHINDAAETLTKMLDLG---LYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLY 490 (502)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y 490 (502)
|-..|-.|.-..++..|...+++--.-+ -.-|..+...||.+|- .|+.+++.+.+. .+ ....+-+.|
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-----~gD~E~~~kvl~----sp-~~r~MDney 262 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-----EGDIEEIKKVLS----SP-TVRNMDNEY 262 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-----cCCHHHHHHHHc----Ch-HhhhhhHHH
Confidence 4445556666778888998888744332 2236678888999985 488888776642 23 334455556
Q ss_pred Hhhc
Q 010739 491 IKKY 494 (502)
Q Consensus 491 ~~~g 494 (502)
++-+
T Consensus 263 a~l~ 266 (308)
T KOG1585|consen 263 AHLN 266 (308)
T ss_pred HHHh
Confidence 5555
No 373
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.43 E-value=2.2e+02 Score=22.99 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 394 AVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 394 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
+..+.+......++.|+......-++++-+.+++..|..+|+-.+.+ +.+....|-.+++-+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 45556667777888999999999999999999999999999887653 334444566555554
No 374
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.19 E-value=1.4e+02 Score=28.08 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=54.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------CCCHHHH
Q 010739 361 ERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK----------GGHINDA 430 (502)
Q Consensus 361 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~A 430 (502)
.++++.|.+.++.|.-+.|.-+.-.+.+.=.+.++..+|+.+..-. .-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 5789999999999999999998888888889999999999886533 237777777774 3555555
Q ss_pred HHHHHH
Q 010739 431 AETLTK 436 (502)
Q Consensus 431 ~~l~~~ 436 (502)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 555553
No 375
>PRK09857 putative transposase; Provisional
Probab=35.25 E-value=2.9e+02 Score=26.06 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=33.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010739 381 IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY 446 (502)
Q Consensus 381 ~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 446 (502)
.++......++.++..++++.+.... .......-++..-+.+.|.-+++.++-.+|+..|+.++.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34433344444444444444444331 112222223344444555556778888888888887663
No 376
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.10 E-value=3.6e+02 Score=24.75 Aligned_cols=31 Identities=6% Similarity=0.050 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 010739 427 INDAAETLTKMLDLGLYPE-YMDRVAVLQGLR 457 (502)
Q Consensus 427 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~ 457 (502)
-+++.+.|.......+..+ ...|..++..++
T Consensus 148 Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~ 179 (249)
T PF06685_consen 148 REEVIQYFRELLNYFLERNPSFLWGSLVADIC 179 (249)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 3455555555555444433 223555554444
No 377
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.92 E-value=2.7e+02 Score=23.73 Aligned_cols=47 Identities=13% Similarity=-0.042 Sum_probs=21.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEG 392 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 392 (502)
.++..+...++.-.|.++++++.+.+..++..|.--.|..+...|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33333433344444555555555554444444444444444444443
No 378
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=34.79 E-value=81 Score=30.73 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHhCcHHHHHHHHHHHHHcCCCCCHhH
Q 010739 244 MMVEGKYVDAIKLVIHLRESGLKPEVYS 271 (502)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t 271 (502)
..+.|++..-..++..|.+.|.+|+.+.
T Consensus 284 ~~i~gr~ks~ysi~~kmlk~~~~~dei~ 311 (543)
T KOG1157|consen 284 HVIKGRHKSLYSIYKKMLKKKLTPDEIH 311 (543)
T ss_pred EEEecchhhHHHHHHHHHhcCCCHHHhh
Confidence 5578999999999999999999998764
No 379
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=33.96 E-value=75 Score=16.58 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLS 219 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~ 219 (502)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 567778888899999999999987764
No 380
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.75 E-value=6.5e+02 Score=27.28 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=38.3
Q ss_pred hhccHhhHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 168 EERGVGDVVDLLVDMDCVGLKP---GFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
+.+.+++|+..-+.-. |..| -.......|+.+.-.|++++|..+.-.|....
T Consensus 368 ~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~ 422 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN 422 (846)
T ss_pred HhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcch
Confidence 6788888888765432 3444 34578889999999999999988877776443
No 381
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.19 E-value=61 Score=23.24 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=31.1
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcc
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKEL 283 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~ 283 (502)
+..++.+|+.+.+.+++++....|..|.......+..+..+.|
T Consensus 8 l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 8 LLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555667888888888888888888887777777777766663
No 382
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=33.12 E-value=3.9e+02 Score=24.55 Aligned_cols=49 Identities=24% Similarity=0.209 Sum_probs=23.5
Q ss_pred hCcHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739 247 EGKYVDAIKLVIHLRES--GLKPEVYSYLIALTAVVKELNEFGKALRKLKGY 296 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~--g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m 296 (502)
.|++++|.+.|+.+... +-+-...+--.++-++.+. ++.+.|+..+++.
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~-~~y~~A~~~~drF 97 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN-GEYDLALAYIDRF 97 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHH
Confidence 35555555555555543 1111223344444455555 4555555555555
No 383
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.10 E-value=1.8e+02 Score=22.42 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=11.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 010739 346 RLLAMYICAGRGLEAERQLWEM 367 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m 367 (502)
.+|..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666554
No 384
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.06 E-value=5.5e+02 Score=27.30 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010739 410 KKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM 447 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 447 (502)
+......++.++.. |+...+++++++|.+.|..|...
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 44444556666555 78889999999998888776543
No 385
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.04 E-value=5e+02 Score=25.80 Aligned_cols=103 Identities=13% Similarity=-0.022 Sum_probs=58.8
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hCC
Q 010739 351 YICAGRGLEAERQLWEMKLV---GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI--KGG 425 (502)
Q Consensus 351 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~--~~g 425 (502)
..+.|.+.+|.+.|.+-... .++|+...|...-.+..+.|+.++|..--+.....+ +.....-+.++-| -.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHH
Confidence 45688888999888887643 445566666666677778888888776655544332 1112222333322 345
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 010739 426 HINDAAETLTKMLDLGLY-PEYMDRVAVLQGL 456 (502)
Q Consensus 426 ~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~ 456 (502)
++++|.+-|+...+..-. -+..|+.-...++
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 677777777765543322 2333444444444
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.75 E-value=4e+02 Score=24.58 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=49.0
Q ss_pred hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHH----HHHHHHHcCCCCCHhHHHHHHHH
Q 010739 203 EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIK----LVIHLRESGLKPEVYSYLIALTA 278 (502)
Q Consensus 203 ~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~ty~~li~~ 278 (502)
+.+++++|.+++.+= ....+..|+..-|-+ +.+-..+.+.++|.....-++..
T Consensus 2 ~~kky~eAidLL~~G-----------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH-----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567788888776432 333444555444443 44444555777777766666666
Q ss_pred HHhccccHHHHHHHHHHHHH---cCCCC--chhchHHHHHHHHhc-CcHHhHHHHH
Q 010739 279 VVKELNEFGKALRKLKGYVR---AGSIA--ELDGKNLGLIEKYQS-DLLADGSRLS 328 (502)
Q Consensus 279 ~~~~~~~~~~a~~~~~~m~~---~g~~p--~~~~~~~~li~~~~~-g~~~~a~~~~ 328 (502)
+...+....+-.++++.+++ .|-.| |..... .+-..|.+ |++.+|++.|
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~-~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHH-LLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHH-HHHHHHHHTT-HHHHHHHH
T ss_pred HHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHH-HHHHHHHhhccHHHHHHHH
Confidence 66552111123333444422 22222 223332 35555777 8888888866
No 387
>PLN03025 replication factor C subunit; Provisional
Probab=32.72 E-value=4.4e+02 Score=25.07 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010739 409 CKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRV 450 (502)
Q Consensus 409 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 450 (502)
+.......++.... .+++++|...+.+|...|..|......
T Consensus 223 ~~~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~Il~~ 263 (319)
T PLN03025 223 PHPLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTDIITT 263 (319)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34444455666554 589999999999999999988755443
No 388
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.71 E-value=4.3e+02 Score=24.87 Aligned_cols=114 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccC
Q 010739 154 MVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQ 233 (502)
Q Consensus 154 li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~ 233 (502)
++.... +..++......++.+.. ...-...|+.+...|++..|.+++.+..+. ...|..
T Consensus 104 Il~~~r--------kr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-----l~~l~~-- 162 (291)
T PF10475_consen 104 ILRLQR--------KRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-----LEELKG-- 162 (291)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----HHhccc--
Q ss_pred CCCchHHHHHHHHhCcHHHHHHHHHHHHHc-----CCCCCHhHHHHHHHHHHhccccHHHHHHHHHH
Q 010739 234 GGPTGYLAWKMMVEGKYVDAIKLVIHLRES-----GLKPEVYSYLIALTAVVKELNEFGKALRKLKG 295 (502)
Q Consensus 234 ~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~ 295 (502)
+...--...++++.....+++.+. -...|+..|..++.||.-. |+...+.+-++.
T Consensus 163 ------~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lL-gk~~~~~dkl~~ 222 (291)
T PF10475_consen 163 ------YSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLL-GKTQSAMDKLQM 222 (291)
T ss_pred ------chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhhHHHHHHHHH
No 389
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=32.67 E-value=1e+02 Score=22.09 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=23.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 354 AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
.|+.+.+.+++++....|..|.......+..+....
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 677777788888777777777766666565554443
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=32.48 E-value=4.2e+02 Score=24.78 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=54.6
Q ss_pred hhccHhhHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCV--GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~--g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~ 245 (502)
..+++.++..+.-+-.+. .++|.+ ...=|-.|.|.|.+..+.++-....+.----+...|.+ +.--++
T Consensus 95 EmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~--------vaELyL 164 (309)
T PF07163_consen 95 EMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGT--------VAELYL 164 (309)
T ss_pred HHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHH--------HHHHHH
Confidence 788999988876655443 355554 44455568999999999999888876543333334555 444444
Q ss_pred H-----hCcHHHHHHHH
Q 010739 246 V-----EGKYVDAIKLV 257 (502)
Q Consensus 246 ~-----~g~~~~a~~~~ 257 (502)
. -|.+++|.++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 49999998876
No 391
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.43 E-value=3.8e+02 Score=24.16 Aligned_cols=98 Identities=7% Similarity=-0.044 Sum_probs=54.5
Q ss_pred CCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCC--chHhHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010739 300 GSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSS--LYGVVHE--RLLAMYICAGRGLEAERQLWEMKLVGKEAD 375 (502)
Q Consensus 300 g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 375 (502)
.+.++..-+|..+|+.+....+.+|-+.|. ...+..+ .|..+++ .-|....+.|++++|++........-+.-|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 345555566655666666644444555553 2334333 4444443 467778999999999999998765444444
Q ss_pred HHHHHHHHH----HHHhcCChhHHHHHH
Q 010739 376 GDLYDIVLA----ICASQNEGSAVSRLL 399 (502)
Q Consensus 376 ~~t~~~li~----~~~~~~~~~~a~~l~ 399 (502)
...|-.+.. -..+.|..++|.+..
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~ 126 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFA 126 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 433333221 223445555554443
No 392
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=32.28 E-value=6.7e+02 Score=27.46 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010739 410 KKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE 445 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 445 (502)
+...+..++..+. .|+.++++.+++++...|+.+.
T Consensus 245 d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 245 DQTYMVRLLDALA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 4444555555444 4788888888888888777654
No 393
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=32.19 E-value=6.4e+02 Score=26.78 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=37.3
Q ss_pred CCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739 233 QGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE 282 (502)
Q Consensus 233 ~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 282 (502)
+|.+...+++-++++|++++|.++..+... +.......|...+..|+..
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 456677799999999999999999966554 3666677788888888775
No 394
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=31.98 E-value=3.1e+02 Score=23.14 Aligned_cols=195 Identities=16% Similarity=0.059 Sum_probs=96.9
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHH-HHhc
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRES-GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIE-KYQS 318 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~-~~~~ 318 (502)
.......+.+..+...+...... ........+......+... ++...+.+.+.........+..... .... .+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 142 (291)
T COG0457 66 ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL-GKYEEALELLEKALALDPDPDLAEA--LLALGALYE 142 (291)
T ss_pred HHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCCCCcchHHH--HHHHHHHHH
Confidence 33333445566666555555432 1222333444444444444 4556666655555433332211111 1222 3445
Q ss_pred -CcHHhHHHHHHHHHHcCCC--CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010739 319 -DLLADGSRLSSWAIQEGGS--SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAV 395 (502)
Q Consensus 319 -g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 395 (502)
|+++.|...|.+... ..+ ......+......+...++.++|...+.+............+..+-..+...++.+.+
T Consensus 143 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 143 LGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred cCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence 777777777766644 222 1222333334444556677777777777766432211345555555666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
...+......... ....+..+...+...|..+++...+.+....
T Consensus 222 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 222 LEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655543321 2333333444444556677777766665543
No 395
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.93 E-value=5.9e+02 Score=26.30 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=13.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 010739 417 LLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m 437 (502)
+...+.|.+++++|+.+--++
T Consensus 500 fFhhLLR~~rfekAFlLAvdi 520 (545)
T PF11768_consen 500 FFHHLLRYQRFEKAFLLAVDI 520 (545)
T ss_pred HHHHHHHhhHHHHHHHHHHhc
Confidence 455556677777777665554
No 396
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=31.66 E-value=5.9e+02 Score=26.17 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
.-+++..+.++.++ .-...+-.+|..-| -+...|-.++.++. .. .-+.-..+++.+.+..+. |++.-.
T Consensus 69 l~~~~~~f~~n~k~-~~veh~c~~~l~~~-e~kmal~el~q~y~--------en-~n~~l~~lWer~ve~dfn-Dvv~~R 136 (711)
T COG1747 69 LVTLLTIFGDNHKN-QIVEHLCTRVLEYG-ESKMALLELLQCYK--------EN-GNEQLYSLWERLVEYDFN-DVVIGR 136 (711)
T ss_pred HHHHHHHhccchHH-HHHHHHHHHHHHhc-chHHHHHHHHHHHH--------hc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence 67788888887777 57777777777776 45556677777666 44 667777888887776653 443344
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh---CcHHHHHHHHHHHHHc-CCCCCHhH
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE---GKYVDAIKLVIHLRES-GLKPEVYS 271 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~---g~~~~a~~~~~~m~~~-g~~p~~~t 271 (502)
-|..-| ..++.+.+..+|.....+=++-....- ---+|.-+.. .+.+..+.+....+.. |..--.+.
T Consensus 137 eLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~--------i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl 207 (711)
T COG1747 137 ELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAA--------IKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVL 207 (711)
T ss_pred HHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhh--------HHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHH
Confidence 444444 448888888888777654322110000 0024444443 4666666666666554 55555666
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHc
Q 010739 272 YLIALTAVVKELNEFGKALRKLKGYVRA 299 (502)
Q Consensus 272 y~~li~~~~~~~~~~~~a~~~~~~m~~~ 299 (502)
+.-+-.-|... .++.+|++++....+.
T Consensus 208 ~qdv~~~Ys~~-eN~~eai~Ilk~il~~ 234 (711)
T COG1747 208 MQDVYKKYSEN-ENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHhccc-cCHHHHHHHHHHHhhh
Confidence 66666667666 6788888777766443
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.91 E-value=2.3e+02 Score=21.18 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=9.2
Q ss_pred CcHHhHHHHHHHHHHcC
Q 010739 319 DLLADGSRLSSWAIQEG 335 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~ 335 (502)
|+.++|.+.+++.+...
T Consensus 55 G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 55 GHYEEALQALEEAIRLA 71 (94)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 56666666555544433
No 398
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=30.60 E-value=1.6e+02 Score=21.57 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 010739 146 VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEM 204 (502)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 204 (502)
|.+.....+++ .| ..++++++...+.++...|+.++. ..+.+.....+.
T Consensus 3 p~~~~i~~i~~-~~--------~~~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILE-SC--------LNGDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHH-HH--------HHTCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS
T ss_pred CCHHHHHHHHH-HH--------HhCCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh
Confidence 55566667777 56 678999999999999999887654 556666666665
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.52 E-value=3e+02 Score=22.71 Aligned_cols=48 Identities=17% Similarity=0.071 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010739 344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNE 391 (502)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~ 391 (502)
--.++..+.+.++.-.|.++++++.+.+...+..|.--.++.+...|-
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334444555554445555555555555544444444444444444443
No 400
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=30.37 E-value=3.9e+02 Score=25.72 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=47.0
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc------cCCCCchHHHHHHHHhCcHHHH
Q 010739 180 VDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG------QQGGPTGYLAWKMMVEGKYVDA 253 (502)
Q Consensus 180 ~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~------~~~~~~~~~~~~~~~~g~~~~a 253 (502)
+...+.|+..+..+.+.|+..+. |+...+..-++.+.-..... ..|... +......+-...++..|+..+|
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~-~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a 227 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDK-EITLEDVEEVVSDVAEFNIFDLADALLKGDVKKA 227 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCC-cCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHH
Confidence 34456788888888888887766 77777777666665332111 111111 1111111233444455677777
Q ss_pred HHHHHHHHHcCCCC
Q 010739 254 IKLVIHLRESGLKP 267 (502)
Q Consensus 254 ~~~~~~m~~~g~~p 267 (502)
+.+++.+...|..|
T Consensus 228 ~~~l~~L~~~ge~p 241 (334)
T COG1466 228 LRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHHcCCcH
Confidence 77777666666554
No 401
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=29.80 E-value=2e+02 Score=23.07 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHc--CCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhcCcH
Q 010739 131 WCALEVFEWLKKE--NRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVD-MDCVGLKPGFSMIEKVISLYWEMEKK 207 (502)
Q Consensus 131 ~~a~~~~~~m~~~--~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~y~~li~~~~~~g~~ 207 (502)
..|+.-+++.... ...+......+|..+- --++.+++++++ +...|+. +..+-..+++...+.|-+
T Consensus 7 ~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE----------~t~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI 75 (124)
T PF08780_consen 7 KKALSRLEEALEKYEDPLSELERDGVIQRFE----------FTFELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLI 75 (124)
T ss_dssp HHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCC
Confidence 4566666666554 3234455555555433 346666666665 3345663 333448888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCccccc
Q 010739 208 ERAVLFVKAVLSRGIAYAEGDGEG 231 (502)
Q Consensus 208 ~~A~~l~~~m~~~~~~p~~~ty~~ 231 (502)
+.....++-+..++ -...||+.
T Consensus 76 ~d~e~Wl~m~~~RN--~tsHtYde 97 (124)
T PF08780_consen 76 DDGEIWLDMLEDRN--LTSHTYDE 97 (124)
T ss_dssp SHHHHHHHHHHHHH--HGGGTTSH
T ss_pred CCHHHHHHHHHHhc--cccCCCCH
Confidence 87777776666665 23556655
No 402
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.22 E-value=1.6e+02 Score=29.52 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc---------c-ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc
Q 010739 249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE---------L-NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS 318 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~---------~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~ 318 (502)
++++|.++.+.+ |....|.-.+.-.-+. | ..+++..++++.+.+.|- +|.-+ .-|+.|-+
T Consensus 29 d~~eav~y~k~~------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~-ad~lp---~TIDSyTR 98 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGG-ADFLP---STIDAYTR 98 (480)
T ss_pred CHHHHHHHHHhC------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccC-CCccc---eeeecccc
Confidence 666776665543 3333333333333321 2 456666666666655541 23322 35666777
Q ss_pred -CcHHhHHHHHHHHHHc
Q 010739 319 -DLLADGSRLSSWAIQE 334 (502)
Q Consensus 319 -g~~~~a~~~~~~m~~~ 334 (502)
+++++|.+-+++-.+.
T Consensus 99 ~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 99 QNRYDEAAVGIKESIKA 115 (480)
T ss_pred cccHHHHHHHHHhhhhc
Confidence 7777777777665553
No 403
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=29.16 E-value=5.9e+02 Score=25.45 Aligned_cols=156 Identities=12% Similarity=0.133 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHcCCChHHH-----HHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHH--------
Q 010739 115 ELQLVLVYFSQEGRDSWCA-----LEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVD-------- 181 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a-----~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~-------- 181 (502)
+...+|..|||.++. +-. +.+++-+....-|-..+||.+-...-....+-+...|++-...+++-+
T Consensus 94 dlES~iTfYCK~Rn~-~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~ 172 (669)
T KOG3636|consen 94 DLESFITFYCKKRNM-DYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCN 172 (669)
T ss_pred hhhhHhhhhhhccCC-cccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhh
Confidence 488899999998876 322 234455545555666777766553332222222245666555555432
Q ss_pred -HhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----------hCcH
Q 010739 182 -MDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----------EGKY 250 (502)
Q Consensus 182 -m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----------~g~~ 250 (502)
+....+.||.++.|.+-..++.+-..+-...+++--.+.+ .|=.+-| +..-.++ ...-
T Consensus 173 ~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vff----------LaliiLiNake~ILq~~sdsK 241 (669)
T KOG3636|consen 173 HLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFF----------LALIILINAKEEILQVKSDSK 241 (669)
T ss_pred hhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHH----------HHHHHhcccHHHHhhhccccH
Confidence 2344689999999999999999888888888888777655 1211111 1222222 3567
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739 251 VDAIKLVIHLRESGLKPEVYSYLIALTAVVKE 282 (502)
Q Consensus 251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 282 (502)
++++++++.|...=-.-|..-|-+|..-|+..
T Consensus 242 Ee~ikfLenmp~~L~~eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 242 EEAIKFLENMPAQLSVEDVPDFFSLAQYYSDK 273 (669)
T ss_pred HHHHHHHHcCchhcccccchhHHHHHHHHhhc
Confidence 88999999887652223444445555555544
No 404
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=29.07 E-value=1.2e+02 Score=31.69 Aligned_cols=49 Identities=8% Similarity=-0.089 Sum_probs=13.7
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
+.|-.+.|..+.+.+-..-+ ...-|...+.-+.|+|+.+.+..+-+.+.
T Consensus 417 ~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 417 ELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444333211 12335555555555555555555544443
No 405
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.03 E-value=5e+02 Score=24.50 Aligned_cols=84 Identities=11% Similarity=-0.067 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcC-C----CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 010739 131 WCALEVFEWLKKEN-R----VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME 205 (502)
Q Consensus 131 ~~a~~~~~~m~~~~-~----~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 205 (502)
..|.+.|+.....+ . +++..-..++.... +.|+.+....+++..... ++......++.+++-..
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~--------~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~ 215 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGV--------RNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSP 215 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHT--------TS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHH--------HHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccC
Confidence 57777888877653 2 35666666666555 667766655555555543 46778899999999999
Q ss_pred cHHHHHHHHHHHHHcC-CCCC
Q 010739 206 KKERAVLFVKAVLSRG-IAYA 225 (502)
Q Consensus 206 ~~~~A~~l~~~m~~~~-~~p~ 225 (502)
+.+...++++.....+ +.+.
T Consensus 216 d~~~~~~~l~~~l~~~~v~~~ 236 (324)
T PF11838_consen 216 DPELLKRLLDLLLSNDKVRSQ 236 (324)
T ss_dssp -HHHHHHHHHHHHCTSTS-TT
T ss_pred CHHHHHHHHHHHcCCcccccH
Confidence 9999999999888754 5544
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.76 E-value=2.8e+02 Score=21.56 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVLS 219 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~~ 219 (502)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 99999999999999999999999876
No 407
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=28.71 E-value=6.3e+02 Score=25.59 Aligned_cols=286 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH--HHH
Q 010739 120 LVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI--EKV 197 (502)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y--~~l 197 (502)
+.+-|-.|++ +-...+.+.-..-..+|..--+.++- .| -.|+++-+.-++ +.|..+|..+| |+.
T Consensus 121 LraACfDG~l-eivKyLvE~gad~~IanrhGhTcLmI-a~--------ykGh~~I~qyLl----e~gADvn~ks~kGNTA 186 (615)
T KOG0508|consen 121 LRAACFDGHL-EIVKYLVEHGADPEIANRHGHTCLMI-AC--------YKGHVDIAQYLL----EQGADVNAKSYKGNTA 186 (615)
T ss_pred HHHHHhcchh-HHHHHHHHcCCCCcccccCCCeeEEe-ee--------ccCchHHHHHHH----HhCCCcchhcccCchH
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-----HhHH
Q 010739 198 ISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-----VYSY 272 (502)
Q Consensus 198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~ty 272 (502)
++-|+..|.++ +++.+...|.+.++.-|.. .-+......|..+.+..+.+ .+. ....
T Consensus 187 LH~caEsG~vd----ivq~Ll~~ga~i~~d~~Gm-------tPL~~Aa~tG~~~iVe~L~~-------~~~sr~~rieal 248 (615)
T KOG0508|consen 187 LHDCAESGSVD----IVQLLLKHGAKIDVDGHGM-------TPLLLAAVTGHTDIVERLLQ-------CETSRESRIEAL 248 (615)
T ss_pred HHhhhhcccHH----HHHHHHhCCceeeecCCCC-------chHHHHhhhcchHHHHHHhc-------CCcchhhHHHHH
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCC-----CchhchHHHHHHHHhc--CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739 273 LIALTAVVKELNEFGKALRKLKGYVRAGSI-----AELDGKNLGLIEKYQS--DLLADGSRLSSWAIQEGGSSLYGVVHE 345 (502)
Q Consensus 273 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~~~~~~li~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (502)
..+-..|.....|.-.|+..|.+-.+.... +...+.+-.+...|.+ ...++-+.+.....+..+.. .+.-.
T Consensus 249 EllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~~Rmqa--Liire 326 (615)
T KOG0508|consen 249 ELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDEMRMQA--LIIRE 326 (615)
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHHHHHHH--HHHHH
Q ss_pred HHHH---------------HHHHcCChHHHHHHHHH---HHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739 346 RLLA---------------MYICAGRGLEAERQLWE---MKLVGKEA----DGDLYDIVLAICASQNEGSAVSRLLSRIE 403 (502)
Q Consensus 346 ~li~---------------~~~~~g~~~~A~~l~~~---m~~~g~~p----~~~t~~~li~~~~~~~~~~~a~~l~~~m~ 403 (502)
.++. .|+..|+++.+.++|.- |++..+.| +..++-++-..|+. ++....
T Consensus 327 rILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~---------mL~d~~ 397 (615)
T KOG0508|consen 327 RILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF---------MLQDFA 397 (615)
T ss_pred HHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH---------Hhhhhh
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010739 404 VMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVL 453 (502)
Q Consensus 404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 453 (502)
..|..-....+.+++-.+.+. ++++=+.|..-+-..|..-|+..+
T Consensus 398 ~~g~~~~~i~~~~~~~Vl~k~-----vlEvEra~~~t~~p~d~~~~~k~l 442 (615)
T KOG0508|consen 398 AKGSLGTQIGFDDLMGVLTKS-----VLEVERALALTREPLDPAQYNKAL 442 (615)
T ss_pred hcCCCCCccchHHHHHHHHHH-----HHHHHHHHHHhcCCCCHHHHHHHH
No 408
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=28.29 E-value=2.6e+02 Score=24.19 Aligned_cols=78 Identities=17% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCC
Q 010739 321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLV-----GKEADGDLYDIVLAICASQNE 391 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~li~~~~~~~~ 391 (502)
+++|..-|++...-.....+ ++..+-.+|.. ..+..+|..+|++-.+. ...|+..+|+.-+..+.+
T Consensus 51 iedAisK~eeAL~I~P~~hd--Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k--- 125 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHD--ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK--- 125 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhcCCchHH--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh---
Confidence 34444444444444333333 44444444443 33333444444443221 468999999999987753
Q ss_pred hhHHHHHHHHHHHcC
Q 010739 392 GSAVSRLLSRIEVMN 406 (502)
Q Consensus 392 ~~~a~~l~~~m~~~~ 406 (502)
|-+++.++...+
T Consensus 126 ---ap~lh~e~~~~~ 137 (186)
T PF06552_consen 126 ---APELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHSS
T ss_pred ---hHHHHHHHHHHH
Confidence 556666665554
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.18 E-value=3.4e+02 Score=22.38 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010739 362 RQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH 426 (502)
Q Consensus 362 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 426 (502)
++.+.+++.|++++..= ..++..+...+..-.|.++++.+...+..-+..|...-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455666677666543 34556666666667777788877776655555565555555655553
No 410
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=28.16 E-value=5.3e+02 Score=24.58 Aligned_cols=99 Identities=12% Similarity=0.216 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCCh---HHHHHHHHHHH-HcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC
Q 010739 116 LQLVLVYFSQEGRDS---WCALEVFEWLK-KEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG 190 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~---~~a~~~~~~m~-~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 190 (502)
-..+.+.|.+..... .....-++++. +.| ..|...+..++. .+ .|++..|+-+++..-..|-.-+
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~-~S---------~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAK-IS---------DGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-Hc---------CCcHHHHHHHHHHhhccCcccc
Confidence 345556666654332 12233344444 456 679999998888 54 6999999999999887665444
Q ss_pred HHHHHHHHH----------H--HHhcCcHHHHHHHHHHHHHcCCCC
Q 010739 191 FSMIEKVIS----------L--YWEMEKKERAVLFVKAVLSRGIAY 224 (502)
Q Consensus 191 ~~~y~~li~----------~--~~~~g~~~~A~~l~~~m~~~~~~p 224 (502)
....+-++. . .+..+|++...+...++.+.|..|
T Consensus 243 ~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~ 288 (346)
T KOG0989|consen 243 TSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSP 288 (346)
T ss_pred hHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCH
Confidence 333333333 2 367888888888888888887553
No 411
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.57 E-value=6.5e+02 Score=25.39 Aligned_cols=11 Identities=9% Similarity=0.444 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 010739 429 DAAETLTKMLD 439 (502)
Q Consensus 429 ~A~~l~~~m~~ 439 (502)
++.+-.+.|+.
T Consensus 366 ~C~~ei~~mk~ 376 (480)
T PHA03100 366 ECEKEIERMKE 376 (480)
T ss_pred HHHHHHHHHHh
Confidence 34444555554
No 412
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.51 E-value=7.9e+02 Score=26.57 Aligned_cols=159 Identities=11% Similarity=-0.011 Sum_probs=69.0
Q ss_pred HHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHH-HcCCCCchHhHHHHHHHHHHHc
Q 010739 277 TAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAI-QEGGSSLYGVVHERLLAMYICA 354 (502)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~~li~~~~~~ 354 (502)
..|.-. |++++|++.--.- ....+.++...+. .++.-|...-++.+.+.++.-. ...++++=.-..+-||..|...
T Consensus 67 KVyy~L-geye~Al~yAL~ag~~F~Vd~~S~y~e-tivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d 144 (929)
T KOG2062|consen 67 KVYYYL-GEYEDALEYALRAGDDFDVDENSDYVE-TIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDD 144 (929)
T ss_pred HHHHHH-HHHHHHHHHHHcCCccccccCccchhh-HHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhh
Confidence 345555 5777776633222 2333455555444 3444443333344444433211 1112222122455666666666
Q ss_pred CChHHHHHH---------HHH-HHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHH
Q 010739 355 GRGLEAERQ---------LWE-MKLVGKEADGDLYDIVLAICASQNE-GSAVSRLLSRIE-VMNSLCKKKTLSWLLRGYI 422 (502)
Q Consensus 355 g~~~~A~~l---------~~~-m~~~g~~p~~~t~~~li~~~~~~~~-~~~a~~l~~~m~-~~~~~p~~~~~~~li~~~~ 422 (502)
+++..|+.+ +++ .....-.++ ..+-++..+....+ -+--.+++..+. ...-.|+. -|..+.++|.
T Consensus 145 ~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~P-Dy~~vc~c~v 221 (929)
T KOG2062|consen 145 NEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSP-DYFSVCQCYV 221 (929)
T ss_pred hHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCC-CeeeeeeeeE
Confidence 666555543 332 111122222 22233333322222 222222333222 22222222 2344566777
Q ss_pred hCCCHHHHHHHHHHHHHC
Q 010739 423 KGGHINDAAETLTKMLDL 440 (502)
Q Consensus 423 ~~g~~~~A~~l~~~m~~~ 440 (502)
-..+.+.|.++++++.++
T Consensus 222 ~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 222 FLDDAEAVADLLEKLVKE 239 (929)
T ss_pred EcCCHHHHHHHHHHHHhc
Confidence 777777777777777663
No 413
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=27.41 E-value=3.8e+02 Score=22.60 Aligned_cols=221 Identities=16% Similarity=0.029 Sum_probs=139.4
Q ss_pred CcHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHHHhc-CcHHhH
Q 010739 248 GKYVDAIKLVIHLRESGLK-PEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~-p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~~~~-g~~~~a 324 (502)
+....+...+......... .....+......+... ++...+...+.........+ ....+. .+...+.. +....+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 114 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKL-GRLEEALELLEKALELELLPNLAEALL-NLGLLLEALGKYEEA 114 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHH-HHHHHHHHHhhHHHH
Confidence 4445555555555544222 1356677777777777 78888888777764321222 222222 24444555 888899
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLA-MYICAGRGLEAERQLWEMKLVGKEA----DGDLYDIVLAICASQNEGSAVSRLL 399 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~li~~~~~~~~~~~a~~l~ 399 (502)
.+.+............ ....... .+...|++++|...+.+... ..| ....+......+...++.+.+...+
T Consensus 115 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 115 LELLEKALALDPDPDL--AEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHcCCCCcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 9988876665533322 3333333 78899999999999999854 333 3334444445567788999999998
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 400 SRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 400 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
..............+..+-..+...++.+.|...+.......-. ....+..+...+.. .+..+++...+......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLE----LGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 87766542224677778888899999999999999998765422 13333333333333 56777777776665443
No 414
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.33 E-value=3.5e+02 Score=22.26 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 393 SAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 393 ~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
-.|.++++.+...+...+..|...-+..+...|
T Consensus 34 ~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444444443334444444444444443
No 415
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=27.26 E-value=4.3e+02 Score=23.21 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=11.7
Q ss_pred CCCCCHhHHHHHHHHHHhc
Q 010739 264 GLKPEVYSYLIALTAVVKE 282 (502)
Q Consensus 264 g~~p~~~ty~~li~~~~~~ 282 (502)
|+.+|...++.++..+.+.
T Consensus 3 Gm~l~~Eh~~yiiklL~ql 21 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQL 21 (233)
T ss_pred cccCCHHHHHHHHHHHHhh
Confidence 5556666666666666555
No 416
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.78 E-value=5.2e+02 Score=23.97 Aligned_cols=152 Identities=14% Similarity=-0.000 Sum_probs=77.9
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-c--ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-----
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE-L--NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS----- 318 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~-~--~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~----- 318 (502)
.+++..+.+.+......+.. .....+...|... | .+..+|.+++....+.|..+--.. |-.+|..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~----lg~~~~~G~gv~ 126 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFN----LGLMYANGRGVP 126 (292)
T ss_pred cccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHh----HHHHHhcCCCcc
Confidence 46677777777776654322 2222233333332 1 457888888887666665432222 3333433
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc-------CChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhc
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA-------GRGLEAERQLWEMKLVGKEADGDLYDIVL--AICASQ 389 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-------g~~~~A~~l~~~m~~~g~~p~~~t~~~li--~~~~~~ 389 (502)
.+..+|.+.|++....|.++.. .+...+-..|... -+...|...|.+....+. |+....-..+ .+..-.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~-~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~-~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAA-LAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGN-PDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCC
Confidence 3788888888888888876630 1222222222222 122367777777776662 1111111111 111222
Q ss_pred CChhHHHHHHHHHHHcCC
Q 010739 390 NEGSAVSRLLSRIEVMNS 407 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~ 407 (502)
.+..+|...+......|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 355566666666555553
No 417
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.76 E-value=4.4e+02 Score=23.13 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.6
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 010739 422 IKGGHINDAAETLTKMLD 439 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~m~~ 439 (502)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 357899999998888875
No 418
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=26.57 E-value=2.3e+02 Score=28.26 Aligned_cols=24 Identities=25% Similarity=-0.028 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH
Q 010739 355 GRGLEAERQLWEMKLVGKEADGDL 378 (502)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~t 378 (502)
|-...|.++++++.+.|+.||..|
T Consensus 239 gl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 239 GLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred EEeccHHHHHHHHHHcCCCCceec
Confidence 444455666666666666665543
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.29 E-value=6.6e+02 Score=25.02 Aligned_cols=137 Identities=12% Similarity=-0.066 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHc---CC-CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHH
Q 010739 250 YVDAIKLVIHLRES---GL-KPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGS 325 (502)
Q Consensus 250 ~~~a~~~~~~m~~~---g~-~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~ 325 (502)
.++...+++..... |+ ..+......++..+ . |+...++.+++.....+- ..+ .+...
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~-Gd~R~aln~Le~~~~~~~---~It-------------~~~v~ 213 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--N-GDARRALNLLELAALGVD---SIT-------------LELLE 213 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--C-CCHHHHHHHHHHHHHccC---CCC-------------HHHHH
Confidence 35555555554332 44 45555544444432 3 788888888877643311 122 12222
Q ss_pred HHHHHHHHcCCCCchHhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-----HHHH
Q 010739 326 RLSSWAIQEGGSSLYGVVHERLLAMYIC---AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS-----AVSR 397 (502)
Q Consensus 326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~-----~a~~ 397 (502)
+++...........+ .+.-++.++.+ ..+.+.|+..+.+|.+.|..|....-..++.++-..|.-+ .|..
T Consensus 214 ~~~~~~~~~~d~~~~--~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~ 291 (413)
T PRK13342 214 EALQKRAARYDKDGD--EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVA 291 (413)
T ss_pred HHHhhhhhccCCCcc--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHH
Confidence 222221111111112 34445555555 5889999999999999999998766666666655555333 3444
Q ss_pred HHHHHHHcCC
Q 010739 398 LLSRIEVMNS 407 (502)
Q Consensus 398 l~~~m~~~~~ 407 (502)
.++.....|.
T Consensus 292 ~~~~~~~~g~ 301 (413)
T PRK13342 292 AADAVERIGM 301 (413)
T ss_pred HHHHHHHhCC
Confidence 4556666664
No 420
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.99 E-value=3.4e+02 Score=29.78 Aligned_cols=129 Identities=9% Similarity=0.064 Sum_probs=82.3
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
..|+++.|++.-..+ -|..+|..|.....+.|+.+-|+..|+..+.-+ -+.+-++..
T Consensus 655 e~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe-----------------kLsfLYliT 711 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKNFE-----------------KLSFLYLIT 711 (1202)
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh-----------------heeEEEEEe
Confidence 578999988854332 266789999999999999999999999887544 155666678
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRL 327 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~ 327 (502)
|+.++-.++.+-.+.+ -|.. ....+++.- |++++-.++++. .|..| .+-+.+-..|.-++|.++
T Consensus 712 gn~eKL~Km~~iae~r---~D~~--~~~qnalYl--~dv~ervkIl~n---~g~~~------laylta~~~G~~~~ae~l 775 (1202)
T KOG0292|consen 712 GNLEKLSKMMKIAEIR---NDAT--GQFQNALYL--GDVKERVKILEN---GGQLP------LAYLTAAAHGLEDQAEKL 775 (1202)
T ss_pred CCHHHHHHHHHHHHhh---hhhH--HHHHHHHHh--ccHHHHHHHHHh---cCccc------HHHHHHhhcCcHHHHHHH
Confidence 8888777665544332 2222 223333333 367766665543 33322 133444444778888888
Q ss_pred HHHHHHcC
Q 010739 328 SSWAIQEG 335 (502)
Q Consensus 328 ~~~m~~~~ 335 (502)
.++.....
T Consensus 776 ~ee~~~~~ 783 (1202)
T KOG0292|consen 776 GEELEKQV 783 (1202)
T ss_pred HHhhcccc
Confidence 87766543
No 421
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.99 E-value=7.5e+02 Score=25.59 Aligned_cols=94 Identities=12% Similarity=-0.025 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDI---VLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
....++.-|.+.+++++|..++..|.=.-. ....|.+ +.+.+-+..--++.+..++.+...=..|....-...+.
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ 487 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVL 487 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHH
Confidence 344567788888888888888887753211 2333333 33555555434444444444433323333332222333
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 010739 420 GYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 420 ~~~~~g~~~~A~~l~~~m~~ 439 (502)
-|.. -=.+-|.++|..|.+
T Consensus 488 ey~d-~V~~~aRRfFhhLLR 506 (545)
T PF11768_consen 488 EYRD-PVSDLARRFFHHLLR 506 (545)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 3332 122345666666654
No 422
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=25.90 E-value=3.1e+02 Score=21.17 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=7.0
Q ss_pred cHHhHHHHHHHHHHc
Q 010739 320 LLADGSRLSSWAIQE 334 (502)
Q Consensus 320 ~~~~a~~~~~~m~~~ 334 (502)
..++|..+-+++...
T Consensus 20 cHqEA~tIAdwL~~~ 34 (115)
T TIGR02508 20 CHQEANTIADWLHLK 34 (115)
T ss_pred HHHHHHHHHHHHhcC
Confidence 345555544444433
No 423
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.88 E-value=9.5e+02 Score=26.73 Aligned_cols=117 Identities=12% Similarity=0.112 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCC-C----CCC----ccccccCCCCchHHHHHHHH---hCcHHHHHHHHHH--
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVLSRGI-A----YAE----GDGEGQQGGPTGYLAWKMMV---EGKYVDAIKLVIH-- 259 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~-~----p~~----~ty~~~~~~~~~~~~~~~~~---~g~~~~a~~~~~~-- 259 (502)
|..|+..|...|+-++|+++|.+.....- . ++. .-|-.+.+...--++|.+.. +.+.+.+.++|-.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 88899999999999999999988865321 1 110 11111111121124555443 4666666776665
Q ss_pred -HHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc
Q 010739 260 -LRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS 318 (502)
Q Consensus 260 -m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~ 318 (502)
-....+.|+. ++ .|.+. ...+-+...++.+....-.++..-.+ .++..|.+
T Consensus 587 ~~~~~sis~~~-----Vl-~~l~~-~~~~l~I~YLE~li~~~~~~~~~lht-~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDD-----VL-NYLKS-KEPKLLIPYLEHLISDNRLTSTLLHT-VLLKLYLE 638 (877)
T ss_pred hhhhccCCHHH-----HH-HHhhh-hCcchhHHHHHHHhHhccccchHHHH-HHHHHHHH
Confidence 1112233222 22 23333 35666666666664443334444443 56666554
No 424
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.46 E-value=8.9e+02 Score=26.29 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC-CC-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhh
Q 010739 117 QLVLVYFSQEGRDSWCALEVFEWLKKEN-RV-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDC 184 (502)
Q Consensus 117 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 184 (502)
.-=|+.+.+.+.+ ++|++.-+.....- +. -.......|..+. ..|++++|-...-.|..
T Consensus 360 ~Dhi~Wll~~k~y-eeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl--------~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 360 EDHIDWLLEKKKY-EEALDAAKASIGNEERFVIKKVGKTYIDHLL--------FEGKYDEAASLCPKMLG 420 (846)
T ss_pred chhHHHHHHhhHH-HHHHHHHHhccCCccccchHHHHHHHHHHHH--------hcchHHHHHhhhHHHhc
Confidence 3456778888888 78888776654333 11 2234555556555 56677766666555544
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=24.91 E-value=1.3e+02 Score=16.37 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=7.1
Q ss_pred cHHhHHHHHHHHHHc
Q 010739 320 LLADGSRLSSWAIQE 334 (502)
Q Consensus 320 ~~~~a~~~~~~m~~~ 334 (502)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555554443
No 426
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.59 E-value=7.9e+02 Score=25.36 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010739 344 HERLLAMYICAGRGLEAERQLWEMKLVGKEAD 375 (502)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 375 (502)
...++.++ ..++.++|+.++++|...|..|.
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 33455554 56899999999999999997664
No 427
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.50 E-value=3.3e+02 Score=20.93 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=28.0
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHcC
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME--KKERAVLFVKAVLSRG 221 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g--~~~~A~~l~~~m~~~~ 221 (502)
..++.++|...+.++..... .......+|..+...+ .-+.+..++..+...+
T Consensus 14 ~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 14 SSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 56788888887777543312 2234444555544442 2345666667776666
No 428
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=24.35 E-value=6.2e+02 Score=24.05 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 374 ADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC---KKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 374 p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
....+|..+...+-+.|.++.|...+..+...+... .....-.-.+.+-..|+.++|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445678888899999999999999888877655222 233333456667778999999999888877
No 429
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=24.19 E-value=8.7e+02 Score=25.71 Aligned_cols=164 Identities=12% Similarity=-0.021 Sum_probs=87.4
Q ss_pred HHHHHHHHH-HcCCChHHHHHHHHHHHHcC-CCChH-----HHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC---
Q 010739 116 LQLVLVYFS-QEGRDSWCALEVFEWLKKEN-RVDNE-----TMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV--- 185 (502)
Q Consensus 116 ~~~ll~~~~-~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~--- 185 (502)
+-.+...+. ...+. +.|...+++..... +++.. ....++..+ ...+...|...+++..+.
T Consensus 62 ~l~la~iL~~eT~n~-~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~---------~~~~~~~a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 62 RLRLASILLEETENL-DLAETYLEKAILLCERHRLTDLKFRCQFLLARIY---------FKTNPKAALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH---------HhcCHHHHHHHHHHHHHHHhc
Confidence 334444444 34456 89998888665433 32222 122333333 334444488888775543
Q ss_pred -CCCCCHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHcCC-CCCCccccccCCCCchH-HHHHHH--HhCcHHHHHHHHHH
Q 010739 186 -GLKPGFSMIEKV-ISLYWEMEKKERAVLFVKAVLSRGI-AYAEGDGEGQQGGPTGY-LAWKMM--VEGKYVDAIKLVIH 259 (502)
Q Consensus 186 -g~~p~~~~y~~l-i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~ty~~~~~~~~~~-~~~~~~--~~g~~~~a~~~~~~ 259 (502)
+..+-...+.-+ +..+...+|...|.+.++.+...-- ..|..++-. . ++.+.+ ..+..+++++..++
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~-------~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL-------ASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH-------HHHHHHHHHhcCCCchhHHHHHHH
Confidence 222333444444 4444445899999999998875431 112111100 0 111111 13667788888877
Q ss_pred HHHcCC---------CCCHhHHHHHHHHHHhcc-ccHHHHHHHHHHH
Q 010739 260 LRESGL---------KPEVYSYLIALTAVVKEL-NEFGKALRKLKGY 296 (502)
Q Consensus 260 m~~~g~---------~p~~~ty~~li~~~~~~~-~~~~~a~~~~~~m 296 (502)
+..... .|-..+|..+++.++... +++..+...++++
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 754322 346678888888877763 5555555544433
No 430
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=24.13 E-value=3.6e+02 Score=21.23 Aligned_cols=109 Identities=7% Similarity=0.019 Sum_probs=62.3
Q ss_pred ccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh-C
Q 010739 170 RGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE-G 248 (502)
Q Consensus 170 ~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~-g 248 (502)
-.-+.+..+++.+.+.|+--|..-....+....+.+. .....+-.++.++|+.++ ++...+.. .
T Consensus 6 ~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi~~~--------------~i~~~l~~~~ 70 (121)
T PF02631_consen 6 FSEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGIDRE--------------IIEEALEEYD 70 (121)
T ss_dssp --HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--HH--------------HHHHHHTCS-
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCCChH--------------HHHHHHHHhh
Confidence 3455667778888889987677777777777776333 345677788889997766 55555553 2
Q ss_pred cHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhccccHHHHHHHH
Q 010739 249 KYVDAIKLVIHLRESG-LKPEVYSYLIALTAVVKELNEFGKALRKL 293 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g-~~p~~~ty~~li~~~~~~~~~~~~a~~~~ 293 (502)
..+.|.++.+.-.... -.++.....-++..+.+.|-+.+.+..++
T Consensus 71 ~~e~a~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi 116 (121)
T PF02631_consen 71 EEEEALELAEKKYRRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVI 116 (121)
T ss_dssp HHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3444555555544442 34566666667777777653344444433
No 431
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=24.00 E-value=2.1e+02 Score=23.52 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC
Q 010739 135 EVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL 187 (502)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 187 (502)
..+.+|.+.|..|..+|..|-. .+ ++|.+.....+...+.+.+.
T Consensus 104 ~~Lr~lrd~gkIdk~~YR~lY~-~a--------KGg~fk~~~~L~~~i~~~~~ 147 (150)
T COG2147 104 RELRKLRDDGKIDKHTYRKLYR-MA--------KGGAFKSKSHLKSYIEEAKL 147 (150)
T ss_pred HHHHHHHHcCCcCHHHHHHHHH-HH--------cCCccccHHHHHHHHHHhcc
Confidence 5678889999999999998877 66 89999999999888888765
No 432
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.94 E-value=1.3e+02 Score=30.60 Aligned_cols=22 Identities=23% Similarity=-0.035 Sum_probs=17.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 010739 348 LAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+..-|+...+++-+++|++|..
T Consensus 310 v~Sk~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 310 VESKCRSNSVEENLRIWEEMKK 331 (712)
T ss_pred ccccccCCCHHHHHHHHHHHhc
Confidence 3445678889999999999975
No 433
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.40 E-value=8.1e+02 Score=25.08 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD 377 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 377 (502)
.+..++.+....+....|+.++++|.+.|..|...
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 55556666555556678999999999999888654
No 434
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.17 E-value=2.7e+02 Score=19.41 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcH
Q 010739 146 VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKK 207 (502)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 207 (502)
|....++-++...+ +...++.++..+++..+.|. .+..+|-.-++.++|..=+
T Consensus 6 ~~~~l~~Ql~el~A--------ed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~ 58 (65)
T PF09454_consen 6 AEDPLSNQLYELVA--------EDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFL 58 (65)
T ss_dssp -SSHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 45567888888666 88899999999999999886 4777888888888775433
No 435
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=23.12 E-value=6.7e+02 Score=23.97 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=28.1
Q ss_pred HHHHHH-HHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCC
Q 010739 291 RKLKGY-VRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGG 336 (502)
Q Consensus 291 ~~~~~m-~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~ 336 (502)
.-++.. .+.|+.-|...+ ..|..++.|++.+|+..++.....|.
T Consensus 195 ~rL~~Ia~~E~v~~d~~al--~~I~~~S~GdLR~Ait~Lqsls~~gk 239 (346)
T KOG0989|consen 195 DRLEKIASKEGVDIDDDAL--KLIAKISDGDLRRAITTLQSLSLLGK 239 (346)
T ss_pred HHHHHHHHHhCCCCCHHHH--HHHHHHcCCcHHHHHHHHHHhhccCc
Confidence 334444 566666666665 36667777888888887776655443
No 436
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.05 E-value=8.5e+02 Score=25.14 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010739 411 KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY 446 (502)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 446 (502)
......++.++ ..++.++|+.+++++...|..|..
T Consensus 242 ~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 242 QERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAART 276 (504)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 33344456655 458889999999999988866653
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=23.01 E-value=3.3e+02 Score=20.36 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=6.5
Q ss_pred CChhHHHHHHHHHH
Q 010739 390 NEGSAVSRLLSRIE 403 (502)
Q Consensus 390 ~~~~~a~~l~~~m~ 403 (502)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 438
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.88 E-value=7.1e+02 Score=24.23 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=15.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCC
Q 010739 354 AGRGLEAERQLWEMKLVGKEAD 375 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~~~g~~p~ 375 (502)
.++..+++.+++++.+.|..|.
T Consensus 258 ~~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 258 KKDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 4667777777777776666554
No 439
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.87 E-value=8.6e+02 Score=25.14 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=49.2
Q ss_pred HHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC---C----------CCCHHHHHHHHHHHHhcC
Q 010739 140 LKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG---L----------KPGFSMIEKVISLYWEME 205 (502)
Q Consensus 140 m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~~y~~li~~~~~~g 205 (502)
+.+.| ..+......++. .+ .|++..|..++++....| + .++....-.+++++.. |
T Consensus 191 l~~egi~~~~~al~~ia~-~s---------~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~ 259 (509)
T PRK14958 191 LKEENVEFENAALDLLAR-AA---------NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-K 259 (509)
T ss_pred HHHcCCCCCHHHHHHHHH-Hc---------CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-C
Confidence 34456 556666666655 33 477888888887765543 1 1233344456666544 8
Q ss_pred cHHHHHHHHHHHHHcCCCCC
Q 010739 206 KKERAVLFVKAVLSRGIAYA 225 (502)
Q Consensus 206 ~~~~A~~l~~~m~~~~~~p~ 225 (502)
+.+.+.+++++|.+.|..|.
T Consensus 260 d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 260 AGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CHHHHHHHHHHHHHcCCCHH
Confidence 89999999999999997754
No 440
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=6.5e+02 Score=23.70 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=23.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchhchH
Q 010739 276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKN 309 (502)
Q Consensus 276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 309 (502)
-+-..+. ++.++|+..+.+....|...|..+.|
T Consensus 10 a~~~v~~-~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 10 ANNAVKS-NDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHhhhh-hhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 3445555 78888888888887778777666554
No 441
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.79 E-value=2.2e+02 Score=22.16 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=27.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS 393 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 393 (502)
++..+...+..-.|.++++++.+.+..++..|.--.|+.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 33444444555556667777766666666666555566666655544
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.76 E-value=7.4e+02 Score=24.40 Aligned_cols=54 Identities=9% Similarity=-0.124 Sum_probs=36.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH------hCcHHHHHHHHHH
Q 010739 198 ISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV------EGKYVDAIKLVIH 259 (502)
Q Consensus 198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~------~g~~~~a~~~~~~ 259 (502)
...+.+.+++..|.++|+++.++.+.|...++-. ....++. .-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~--------~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYE--------AMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHH--------HHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3355678899999999999998876665444322 2222222 3688888888875
No 443
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.62 E-value=3.3e+02 Score=20.28 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=14.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 010739 417 LLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
+.......|+.++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445566777777777776554
No 444
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=22.57 E-value=3.1e+02 Score=27.84 Aligned_cols=23 Identities=26% Similarity=-0.015 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH
Q 010739 355 GRGLEAERQLWEMKLVGKEADGD 377 (502)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~ 377 (502)
|-.-.|.++|+++.+.|+.||..
T Consensus 230 g~~GNaadv~~~l~~r~i~pDlv 252 (545)
T TIGR01228 230 GLLGNAAEVLPELLKRGVVPDVV 252 (545)
T ss_pred EeeccHHHHHHHHHHcCCCCCCc
Confidence 44445555566665556555544
No 445
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.50 E-value=8.7e+02 Score=25.09 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010739 411 KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM 447 (502)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 447 (502)
....-.|+.+..+ |+.++|+.+++++...|..|...
T Consensus 258 ~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 258 SSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 3333445555444 88889999999998888877654
No 446
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.50 E-value=8.4e+02 Score=24.91 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=35.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHcCCC
Q 010739 353 CAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS------AVSRLLSRIEVMNSL 408 (502)
Q Consensus 353 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~------~a~~l~~~m~~~~~~ 408 (502)
+.+++++|+.++.+|...|..|....-..+..++-..|.-+ .+..+++.....|..
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~ 316 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFA 316 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCc
Confidence 56889999999999998888887665444444444444333 344444555555643
No 447
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=22.33 E-value=96 Score=21.47 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHHHHcC
Q 010739 206 KKERAVLFVKAVLSRG 221 (502)
Q Consensus 206 ~~~~A~~l~~~m~~~~ 221 (502)
|++.|.+.|.+++..|
T Consensus 40 d~~~Al~~F~~lk~~~ 55 (63)
T smart00804 40 DYERALKNFTELKSEG 55 (63)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 5555666666555544
No 448
>PRK05414 urocanate hydratase; Provisional
Probab=22.31 E-value=3.2e+02 Score=27.83 Aligned_cols=23 Identities=26% Similarity=-0.009 Sum_probs=11.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH
Q 010739 355 GRGLEAERQLWEMKLVGKEADGD 377 (502)
Q Consensus 355 g~~~~A~~l~~~m~~~g~~p~~~ 377 (502)
|-.-.|.++|+++.+.|+.||..
T Consensus 239 g~~GNaadv~~~l~~~~i~pDlv 261 (556)
T PRK05414 239 GLLGNAADVLPELVRRGIRPDLV 261 (556)
T ss_pred EEeccHHHHHHHHHHcCCCCCcc
Confidence 33444555555555555555443
No 449
>PHA02989 ankyrin repeat protein; Provisional
Probab=22.01 E-value=8.6e+02 Score=24.82 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=9.7
Q ss_pred HHHHHHHHHHcCCCCCH
Q 010739 253 AIKLVIHLRESGLKPEV 269 (502)
Q Consensus 253 a~~~~~~m~~~g~~p~~ 269 (502)
..++.+.+.+.|..+|.
T Consensus 87 ~~~iv~~Ll~~Gadin~ 103 (494)
T PHA02989 87 IKKIVKLLLKFGADINL 103 (494)
T ss_pred HHHHHHHHHHCCCCCCC
Confidence 34555666666665554
No 450
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.81 E-value=1.6e+02 Score=21.46 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
++++.+.+|.--++|+++++-|..+|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 46778899999999999999999988
No 451
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=21.62 E-value=7.6e+02 Score=24.10 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC------CCC
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRV-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV------GLK 188 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~------g~~ 188 (502)
.-.-|..+.+.|.+ +.|+++.+-+...... |+...-.+|+.++- +.++++-.+++.+..... ..-
T Consensus 106 l~r~i~~L~~RG~~-rTAlE~~KlLlsLdp~~DP~g~ll~ID~~AL-------rs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 106 LFRYIQSLGRRGCW-RTALEWCKLLLSLDPDEDPLGVLLFIDYYAL-------RSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred HHHHHHHHHhcCcH-HHHHHHHHHHHhcCCCCCcchhHHHHHHHHH-------hcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 44556788999999 8999999999998833 88888888887764 788888888888876552 123
Q ss_pred CCHHHHHHHHHHHHhcCc
Q 010739 189 PGFSMIEKVISLYWEMEK 206 (502)
Q Consensus 189 p~~~~y~~li~~~~~~g~ 206 (502)
||. .|+..+..+...++
T Consensus 178 Pn~-a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 178 PNF-AFSIALAYFRLEKE 194 (360)
T ss_pred ccH-HHHHHHHHHHhcCc
Confidence 443 67777766654444
No 452
>PRK14700 recombination factor protein RarA; Provisional
Probab=21.31 E-value=7.1e+02 Score=23.59 Aligned_cols=174 Identities=9% Similarity=-0.104 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHH
Q 010739 172 VGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYV 251 (502)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~ 251 (502)
++.|+.--+......+..+....+.++.. -.||...|+..++.........+...-+. +
T Consensus 48 l~ral~~~~~~~~~~~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~~it~-------------------~ 106 (300)
T PRK14700 48 IEKALSQDEVLAKHKFKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEIYLNK-------------------E 106 (300)
T ss_pred HHHHHHhhhccCCcCCCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCCccCH-------------------H
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--cccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-C-----cHHh
Q 010739 252 DAIKLVIHLRESGLKPEVYSYLIALTAVVKE--LNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-D-----LLAD 323 (502)
Q Consensus 252 ~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g-----~~~~ 323 (502)
.+.++...-.-.--+-....|+. |+|+.|. |.|.+.|+-++-.|.+.|-+|....-. .++-++.. | -+..
T Consensus 107 ~~~~~~~~~~~~yDk~gd~HYd~-iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRR-Lii~AsEDIGlAdP~al~~ 184 (300)
T PRK14700 107 LFDQAVGETSRDFHREGKEFYEQ-LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARR-MLCIASEDIGNADPQALRV 184 (300)
T ss_pred HHHHHHhHHHhcccCCcchhHHH-HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHH-HHHHHHhhccCCCHHHHHH
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
|...++....-|+|.-. ....-.+--+|.+-+-..+..-++...+
T Consensus 185 a~aa~~A~~~iG~PEa~-i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 185 AMDAWNAYEKLGMPEGR-LVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHhCChHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
No 453
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=21.02 E-value=3.6e+02 Score=20.13 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 010739 132 CALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAV 211 (502)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 211 (502)
.+.++++.+.+.|..+....+.+-. ... ..|+.+.|..++..+. .| |+ .|...+.++-..|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~ilT~~d~e~I~a-a~~-------~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLLTEEDRNRIEA-ATE-------NHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHH-hcc-------ccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhh
Confidence 4557788888888445554444433 321 5689999999999998 53 33 5889999998888766554
Q ss_pred H
Q 010739 212 L 212 (502)
Q Consensus 212 ~ 212 (502)
+
T Consensus 87 e 87 (88)
T cd08819 87 E 87 (88)
T ss_pred c
Confidence 3
No 454
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=20.89 E-value=4.4e+02 Score=21.06 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhcCcHHhHHH
Q 010739 250 YVDAIKLVIHLRESG-LKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQSDLLADGSR 326 (502)
Q Consensus 250 ~~~a~~~~~~m~~~g-~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~g~~~~a~~ 326 (502)
+..|+.-+++..... -.++......+|..|--. ++-++++++.. ...|+. +..+-..++-.++..|-+++...
T Consensus 6 ~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t---~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~ 80 (124)
T PF08780_consen 6 FKKALSRLEEALEKYEDPLSELERDGVIQRFEFT---FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEI 80 (124)
T ss_dssp HHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHH
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHH
Confidence 456666666655532 233445556666666655 78888888887 667874 33333422333333366644443
No 455
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.78 E-value=9.2e+02 Score=24.71 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010739 410 KKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD 448 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 448 (502)
+...+..++.+....+....|+.++++|.+.|..|....
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 666667777777666667789999999999998877654
No 456
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=20.51 E-value=9.5e+02 Score=24.78 Aligned_cols=152 Identities=14% Similarity=0.027 Sum_probs=103.0
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHH
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSR 326 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~ 326 (502)
+..+.-+.-+-.+|..-| -+.-.|-.++..|... ..+.-..+++.+++..+.-.+.+ -.|...|.+++.+.+..
T Consensus 79 n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en--~n~~l~~lWer~ve~dfnDvv~~--ReLa~~yEkik~sk~a~ 152 (711)
T COG1747 79 NHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN--GNEQLYSLWERLVEYDFNDVVIG--RELADKYEKIKKSKAAE 152 (711)
T ss_pred chHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc--CchhhHHHHHHHHHhcchhHHHH--HHHHHHHHHhchhhHHH
Confidence 445556666677777654 3667788889999888 36777788888877766433333 25777788888888888
Q ss_pred HHHHHHHcCCCCch----HhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739 327 LSSWAIQEGGSSLY----GVVHERLLAMYICAGRGLEAERQLWEMKLV-GKEADGDLYDIVLAICASQNEGSAVSRLLSR 401 (502)
Q Consensus 327 ~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~ 401 (502)
.|.+....-+|... -..|.-++.-- ..+.+..+.+....... |..--.+.+.-+-.-|....++++|.+++..
T Consensus 153 ~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~ 230 (711)
T COG1747 153 FFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKH 230 (711)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 88887765554321 12454444311 45677777777776654 6666667777777888889999999999876
Q ss_pred HHHcC
Q 010739 402 IEVMN 406 (502)
Q Consensus 402 m~~~~ 406 (502)
+.+..
T Consensus 231 il~~d 235 (711)
T COG1747 231 ILEHD 235 (711)
T ss_pred Hhhhc
Confidence 55443
No 457
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.41 E-value=2.7e+02 Score=21.58 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=29.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739 382 VLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 382 li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (502)
++..+...+..-.|.++++.+...+...+..|....++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444455566777777777666666667666677777666543
No 458
>PRK14136 recX recombination regulator RecX; Provisional
Probab=20.34 E-value=7.5e+02 Score=23.50 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=25.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC
Q 010739 177 DLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA 225 (502)
Q Consensus 177 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 225 (502)
.+++.+.+.|+--|...-..+++. +.+. ..-.+|-.++.++||..+
T Consensus 198 ~VIerLke~gYLDDeRFAesyVr~--R~~k-kGp~rIrqELrQKGId~e 243 (309)
T PRK14136 198 PLLDALEREGWLSDARFAESLVHR--RASR-VGSARIVSELKRHAVGDA 243 (309)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHH--Hhhc-hhHHHHHHHHHHcCCCHH
Confidence 334444456665454444444543 2233 234567788888887766
No 459
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=20.22 E-value=7.3e+02 Score=23.81 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHH----------HHHH-HHHHHHhCCCHHHH
Q 010739 364 LWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL--CKKK----------TLSW-LLRGYIKGGHINDA 430 (502)
Q Consensus 364 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~--p~~~----------~~~~-li~~~~~~g~~~~A 430 (502)
-.+..+.|++.+......++..+. |+...+..-++.+...... .+.. +++. -+.-+...|+.++|
T Consensus 150 ~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a 227 (334)
T COG1466 150 KKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKA 227 (334)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHH
Confidence 344555666666666666665554 5555544444333222211 1111 1111 22234457999999
Q ss_pred HHHHHHHHHCCCCCCHH
Q 010739 431 AETLTKMLDLGLYPEYM 447 (502)
Q Consensus 431 ~~l~~~m~~~g~~p~~~ 447 (502)
..+++++...|..|-..
T Consensus 228 ~~~l~~L~~~ge~p~~i 244 (334)
T COG1466 228 LRLLRDLLLEGEEPLKL 244 (334)
T ss_pred HHHHHHHHHcCCcHHHH
Confidence 99999999999876443
No 460
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.04 E-value=2.1e+02 Score=22.54 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010739 345 ERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS 393 (502)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 393 (502)
..++..+...+..-.|.++++.|.+.+...+..|.---|+.+...|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 3455555555556667777777777666666666555556665555443
Done!