Query 010739
Match_columns 502
No_of_seqs 449 out of 2870
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 6.9E-33 2.4E-37 280.0 22.8 207 170-387 4-221 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.4E-32 4.8E-37 277.7 24.9 205 251-458 7-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 5.6E-28 1.9E-32 252.1 36.5 380 86-500 100-570 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3.7E-26 1.3E-30 238.3 39.7 342 114-480 201-580 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-19 4.2E-24 178.5 41.7 365 85-495 14-381 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.1E-18 7.3E-23 169.6 39.4 345 120-500 6-359 (388)
7 3spa_A Mtrpol, DNA-directed RN 99.9 5.8E-22 2E-26 205.9 10.3 150 341-494 127-286 (1134)
8 3spa_A Mtrpol, DNA-directed RN 99.8 2.6E-20 8.9E-25 193.7 11.8 161 147-330 126-306 (1134)
9 2y4t_A DNAJ homolog subfamily 99.8 2.9E-16 1E-20 157.3 37.7 312 114-448 27-364 (450)
10 2y4t_A DNAJ homolog subfamily 99.8 5.4E-16 1.9E-20 155.3 34.7 313 132-479 10-358 (450)
11 2gw1_A Mitochondrial precursor 99.8 1.4E-15 4.9E-20 154.7 35.9 364 116-500 9-469 (514)
12 2gw1_A Mitochondrial precursor 99.7 3.3E-15 1.1E-19 152.1 33.4 363 85-480 21-479 (514)
13 3fp2_A TPR repeat-containing p 99.7 3.1E-13 1.1E-17 138.3 37.4 358 116-500 28-482 (537)
14 3ieg_A DNAJ homolog subfamily 99.7 1.3E-12 4.4E-17 126.0 39.5 307 115-445 5-338 (359)
15 1b89_A Protein (clathrin heavy 99.6 2.2E-15 7.6E-20 145.8 16.3 277 168-499 15-301 (449)
16 3fp2_A TPR repeat-containing p 99.6 2.4E-13 8.3E-18 139.1 32.7 353 86-480 41-492 (537)
17 3ieg_A DNAJ homolog subfamily 99.6 4.1E-12 1.4E-16 122.4 36.2 299 148-480 3-336 (359)
18 3hym_B Cell division cycle pro 99.6 2.5E-12 8.6E-17 122.5 32.8 270 187-479 18-299 (330)
19 3hym_B Cell division cycle pro 99.6 1.6E-12 5.4E-17 123.9 30.5 279 116-456 25-314 (330)
20 1fch_A Peroxisomal targeting s 99.6 2.3E-13 7.7E-18 132.2 24.4 251 168-435 76-354 (368)
21 1fch_A Peroxisomal targeting s 99.6 5.4E-13 1.9E-17 129.5 26.2 288 168-474 37-354 (368)
22 3mkr_A Coatomer subunit epsilo 99.5 1.9E-12 6.4E-17 121.7 25.3 251 123-406 9-265 (291)
23 3cv0_A Peroxisome targeting si 99.5 5.2E-12 1.8E-16 120.1 28.6 261 116-436 24-311 (327)
24 1b89_A Protein (clathrin heavy 99.5 1.9E-13 6.7E-18 132.3 18.3 200 115-368 34-234 (449)
25 3mkr_A Coatomer subunit epsilo 99.5 9.5E-13 3.2E-17 123.7 22.7 272 200-499 8-284 (291)
26 4eqf_A PEX5-related protein; a 99.5 1.5E-12 5E-17 126.6 24.7 262 147-435 64-351 (365)
27 4eqf_A PEX5-related protein; a 99.5 3.7E-12 1.3E-16 123.7 26.4 269 115-400 67-351 (365)
28 3cv0_A Peroxisome targeting si 99.5 3E-12 1E-16 121.8 25.0 254 168-477 33-313 (327)
29 3uq3_A Heat shock protein STI1 99.4 9.3E-11 3.2E-15 107.2 23.7 225 191-440 5-236 (258)
30 2xm6_A Protein corresponding t 99.4 6.6E-09 2.3E-13 105.1 39.5 321 114-480 76-433 (490)
31 2xm6_A Protein corresponding t 99.4 8.2E-09 2.8E-13 104.4 40.0 289 116-443 114-435 (490)
32 2ooe_A Cleavage stimulation fa 99.3 4.1E-09 1.4E-13 107.8 35.3 116 85-219 27-158 (530)
33 1xi4_A Clathrin heavy chain; a 99.3 5.9E-09 2E-13 112.7 35.1 343 86-499 1001-1374(1630)
34 3uq3_A Heat shock protein STI1 99.3 7.4E-10 2.5E-14 101.1 24.1 222 114-369 6-235 (258)
35 2ooe_A Cleavage stimulation fa 99.3 1.3E-08 4.6E-13 103.9 34.4 352 113-500 13-483 (530)
36 1xi4_A Clathrin heavy chain; a 99.3 9.7E-09 3.3E-13 111.1 32.9 311 109-496 981-1296(1630)
37 2vq2_A PILW, putative fimbrial 99.2 2.8E-09 9.4E-14 95.1 24.0 203 190-439 7-210 (225)
38 2ho1_A Type 4 fimbrial biogene 99.2 2.3E-09 7.8E-14 97.8 23.7 201 191-440 37-238 (252)
39 2ho1_A Type 4 fimbrial biogene 99.2 3.5E-09 1.2E-13 96.5 25.0 201 269-480 37-239 (252)
40 1xnf_A Lipoprotein NLPI; TPR, 99.2 7.6E-10 2.6E-14 102.3 19.5 184 168-368 17-204 (275)
41 2vq2_A PILW, putative fimbrial 99.2 7E-09 2.4E-13 92.4 25.1 202 268-479 7-211 (225)
42 1xnf_A Lipoprotein NLPI; TPR, 99.2 3.5E-09 1.2E-13 97.7 22.9 240 247-499 18-265 (275)
43 3nf1_A KLC 1, kinesin light ch 99.2 2.2E-10 7.6E-15 107.9 12.5 242 188-439 24-306 (311)
44 3u4t_A TPR repeat-containing p 99.1 1E-08 3.4E-13 94.6 22.8 223 168-440 15-250 (272)
45 3ro2_A PINS homolog, G-protein 99.1 2.7E-09 9.1E-14 101.3 19.3 261 168-439 17-331 (338)
46 1ouv_A Conserved hypothetical 99.1 7E-08 2.4E-12 89.2 28.4 223 190-441 5-252 (273)
47 2q7f_A YRRB protein; TPR, prot 99.1 6.1E-09 2.1E-13 94.1 20.6 194 240-441 29-223 (243)
48 2pl2_A Hypothetical conserved 99.1 5.3E-09 1.8E-13 93.4 19.7 193 147-366 4-210 (217)
49 3sf4_A G-protein-signaling mod 99.1 6.7E-09 2.3E-13 101.7 21.9 261 168-439 21-335 (406)
50 3u4t_A TPR repeat-containing p 99.1 1.4E-08 4.7E-13 93.6 22.8 227 241-480 10-251 (272)
51 2pl2_A Hypothetical conserved 99.1 1.2E-08 4.2E-13 91.0 21.3 197 266-476 2-211 (217)
52 4a1s_A PINS, partner of inscut 99.1 2.5E-09 8.4E-14 105.3 18.1 261 168-439 60-371 (411)
53 1ouv_A Conserved hypothetical 99.1 1E-07 3.5E-12 88.0 27.7 223 147-406 5-252 (273)
54 4g1t_A Interferon-induced prot 99.1 1.2E-07 4E-12 95.1 29.9 300 147-476 50-398 (472)
55 2q7f_A YRRB protein; TPR, prot 99.1 9.4E-09 3.2E-13 92.9 19.2 201 267-480 21-223 (243)
56 4g1t_A Interferon-induced prot 99.1 7.5E-08 2.6E-12 96.5 27.1 306 113-440 51-401 (472)
57 3sf4_A G-protein-signaling mod 99.1 2.1E-08 7.3E-13 98.0 22.5 274 188-477 6-334 (406)
58 4a1s_A PINS, partner of inscut 99.0 1.2E-08 4.1E-13 100.4 19.8 272 191-478 48-371 (411)
59 3ro2_A PINS homolog, G-protein 99.0 2E-08 6.9E-13 95.1 20.7 271 192-478 6-331 (338)
60 2ond_A Cleavage stimulation fa 99.0 2E-07 6.8E-12 88.0 25.1 222 131-369 33-269 (308)
61 3nf1_A KLC 1, kinesin light ch 99.0 2.3E-08 7.7E-13 93.9 17.8 239 148-404 27-306 (311)
62 2h6f_A Protein farnesyltransfe 98.9 1.8E-07 6.1E-12 90.9 22.8 225 116-367 100-344 (382)
63 2ond_A Cleavage stimulation fa 98.9 7.1E-07 2.4E-11 84.1 26.2 217 251-478 33-269 (308)
64 2h6f_A Protein farnesyltransfe 98.9 2.7E-07 9.4E-12 89.6 23.5 241 192-456 98-363 (382)
65 3ulq_A Response regulator aspa 98.9 2.5E-07 8.4E-12 90.2 23.0 296 124-439 23-367 (383)
66 3edt_B KLC 2, kinesin light ch 98.9 8E-08 2.7E-12 88.6 18.5 134 269-404 43-197 (283)
67 3vtx_A MAMA; tetratricopeptide 98.8 1.1E-06 3.8E-11 75.6 22.6 166 268-440 4-170 (184)
68 3ulq_A Response regulator aspa 98.8 1.3E-06 4.5E-11 85.0 25.1 296 168-477 24-366 (383)
69 1hz4_A MALT regulatory protein 98.8 2.1E-06 7.3E-11 83.0 26.0 261 168-439 26-321 (373)
70 3as5_A MAMA; tetratricopeptide 98.8 5.7E-07 2E-11 76.9 19.4 161 271-439 10-172 (186)
71 1hz4_A MALT regulatory protein 98.8 4.7E-06 1.6E-10 80.6 27.8 274 194-476 17-319 (373)
72 3vtx_A MAMA; tetratricopeptide 98.8 7.3E-07 2.5E-11 76.8 19.7 163 190-369 4-169 (184)
73 4abn_A Tetratricopeptide repea 98.8 2E-07 7E-12 93.6 18.3 211 131-366 85-317 (474)
74 3edt_B KLC 2, kinesin light ch 98.8 4.4E-07 1.5E-11 83.5 18.7 234 168-439 13-280 (283)
75 3as5_A MAMA; tetratricopeptide 98.7 9.6E-07 3.3E-11 75.5 18.6 159 311-478 13-172 (186)
76 3e4b_A ALGK; tetratricopeptide 98.7 1.2E-06 4.1E-11 87.4 21.0 323 119-481 9-389 (452)
77 3e4b_A ALGK; tetratricopeptide 98.7 4.1E-06 1.4E-10 83.5 23.2 217 240-479 182-421 (452)
78 3q15_A PSP28, response regulat 98.7 1.6E-05 5.5E-10 77.1 26.9 302 117-439 14-364 (378)
79 2fo7_A Synthetic consensus TPR 98.6 2.2E-06 7.5E-11 68.8 17.2 124 312-439 7-131 (136)
80 4abn_A Tetratricopeptide repea 98.6 1.9E-06 6.5E-11 86.5 19.7 218 247-479 81-321 (474)
81 3q15_A PSP28, response regulat 98.6 4.2E-06 1.5E-10 81.2 20.1 216 279-499 111-355 (378)
82 2fo7_A Synthetic consensus TPR 98.5 6.9E-06 2.3E-10 65.8 17.3 129 343-478 3-131 (136)
83 4e6h_A MRNA 3'-END-processing 98.5 0.00056 1.9E-08 71.1 35.1 130 112-262 65-222 (679)
84 4gyw_A UDP-N-acetylglucosamine 98.5 6.6E-06 2.3E-10 86.5 20.6 162 269-439 9-173 (723)
85 1qqe_A Vesicular transport pro 98.5 1.8E-05 6E-10 73.8 20.1 210 249-479 32-269 (292)
86 4gyw_A UDP-N-acetylglucosamine 98.4 6.6E-06 2.3E-10 86.5 18.3 162 190-369 8-173 (723)
87 4e6h_A MRNA 3'-END-processing 98.4 0.00063 2.1E-08 70.7 32.8 372 112-500 99-561 (679)
88 4i17_A Hypothetical protein; T 98.4 4E-05 1.4E-09 68.2 19.9 181 245-439 18-208 (228)
89 3mv2_B Coatomer subunit epsilo 98.4 2.9E-05 1E-09 71.9 19.0 145 253-402 85-237 (310)
90 4i17_A Hypothetical protein; T 98.4 1.7E-05 5.9E-10 70.7 17.1 195 190-406 6-210 (228)
91 3mv2_B Coatomer subunit epsilo 98.3 2.5E-05 8.5E-10 72.4 16.4 198 289-498 85-301 (310)
92 2ifu_A Gamma-SNAP; membrane fu 98.3 5.1E-05 1.7E-09 71.2 18.8 216 246-472 3-254 (307)
93 1qqe_A Vesicular transport pro 98.2 8E-05 2.8E-09 69.3 17.5 174 285-478 32-227 (292)
94 3qky_A Outer membrane assembly 98.1 0.00014 4.9E-09 66.1 18.2 99 190-299 14-126 (261)
95 2ifu_A Gamma-SNAP; membrane fu 98.1 6.3E-05 2.2E-09 70.6 15.8 228 168-433 3-254 (307)
96 3u3w_A Transcriptional activat 98.1 0.00026 8.9E-09 65.8 19.6 162 276-438 82-264 (293)
97 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00051 1.8E-08 61.0 20.3 56 348-405 154-213 (225)
98 3u3w_A Transcriptional activat 98.1 0.00043 1.5E-08 64.2 20.6 208 255-476 32-263 (293)
99 3qky_A Outer membrane assembly 98.1 0.00042 1.4E-08 63.0 19.8 167 270-440 16-224 (261)
100 2yhc_A BAMD, UPF0169 lipoprote 98.0 0.00082 2.8E-08 59.6 20.4 55 243-298 13-69 (225)
101 3urz_A Uncharacterized protein 98.0 0.00047 1.6E-08 60.4 17.9 129 312-450 60-194 (208)
102 2pzi_A Probable serine/threoni 98.0 0.00026 8.8E-09 74.4 18.8 189 280-477 402-603 (681)
103 3qou_A Protein YBBN; thioredox 98.0 9.3E-05 3.2E-09 68.7 13.7 164 188-366 114-280 (287)
104 2vsy_A XCC0866; transferase, g 98.0 0.00018 6.2E-09 73.8 17.2 151 247-406 2-158 (568)
105 2r5s_A Uncharacterized protein 98.0 8.5E-05 2.9E-09 63.2 12.4 156 312-476 12-170 (176)
106 3qou_A Protein YBBN; thioredox 98.0 0.00025 8.5E-09 65.8 16.4 151 316-475 127-280 (287)
107 2vsy_A XCC0866; transferase, g 98.0 0.00022 7.5E-09 73.2 17.4 151 284-441 3-158 (568)
108 3rjv_A Putative SEL1 repeat pr 97.9 0.00075 2.6E-08 59.3 18.0 176 252-441 4-198 (212)
109 2pzi_A Probable serine/threoni 97.9 0.00019 6.4E-09 75.4 16.3 171 245-426 402-583 (681)
110 2qfc_A PLCR protein; TPR, HTH, 97.9 0.00072 2.5E-08 62.7 18.7 165 272-438 78-264 (293)
111 2r5s_A Uncharacterized protein 97.9 0.00015 5.1E-09 61.7 12.8 151 242-401 14-169 (176)
112 1na0_A Designed protein CTPR3; 97.9 0.00044 1.5E-08 54.1 14.4 99 341-441 9-107 (125)
113 3rjv_A Putative SEL1 repeat pr 97.9 0.002 6.9E-08 56.5 19.6 181 287-481 3-199 (212)
114 3dra_A Protein farnesyltransfe 97.8 0.0056 1.9E-07 56.9 23.2 149 125-298 44-214 (306)
115 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.0011 3.6E-08 57.9 17.5 123 241-370 13-150 (213)
116 3gw4_A Uncharacterized protein 97.8 0.00033 1.1E-08 60.6 14.1 98 342-439 67-175 (203)
117 1a17_A Serine/threonine protei 97.8 0.00077 2.6E-08 55.9 15.4 82 319-403 27-108 (166)
118 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.0011 3.8E-08 57.8 17.0 112 319-436 20-146 (213)
119 3gyz_A Chaperone protein IPGC; 97.8 0.00048 1.7E-08 56.9 13.5 105 337-446 32-137 (151)
120 1na0_A Designed protein CTPR3; 97.8 0.00094 3.2E-08 52.1 14.6 89 314-405 17-106 (125)
121 3urz_A Uncharacterized protein 97.8 0.0011 3.6E-08 58.1 16.1 161 243-416 13-195 (208)
122 1a17_A Serine/threonine protei 97.7 0.0016 5.3E-08 54.0 16.2 128 342-476 14-143 (166)
123 2e2e_A Formate-dependent nitri 97.7 0.00061 2.1E-08 57.7 13.5 119 319-441 24-145 (177)
124 4gco_A Protein STI-1; structur 97.7 0.0013 4.6E-08 52.3 14.5 104 340-447 12-115 (126)
125 3gw4_A Uncharacterized protein 97.7 0.00046 1.6E-08 59.6 12.7 153 319-477 6-174 (203)
126 4ga2_A E3 SUMO-protein ligase 97.7 0.0014 4.7E-08 54.0 14.8 109 312-425 37-148 (150)
127 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0028 9.5E-08 58.7 17.8 160 312-475 81-262 (293)
128 4b4t_Q 26S proteasome regulato 97.6 0.029 1E-06 54.7 25.6 202 199-402 12-242 (434)
129 2vyi_A SGTA protein; chaperone 97.6 0.002 6.8E-08 50.6 13.9 96 343-440 14-109 (131)
130 2c2l_A CHIP, carboxy terminus 97.6 0.0053 1.8E-07 56.5 18.3 190 115-333 6-198 (281)
131 3dra_A Protein farnesyltransfe 97.5 0.04 1.4E-06 51.1 24.1 219 200-439 41-286 (306)
132 2vgx_A Chaperone SYCD; alterna 97.5 0.00051 1.7E-08 56.5 10.0 100 338-440 18-118 (148)
133 4b4t_Q 26S proteasome regulato 97.5 0.01 3.4E-07 58.1 21.1 198 241-439 11-244 (434)
134 1elr_A TPR2A-domain of HOP; HO 97.5 0.0027 9.1E-08 49.9 13.8 107 342-451 5-117 (131)
135 2vyi_A SGTA protein; chaperone 97.5 0.0065 2.2E-07 47.5 16.0 113 311-427 17-130 (131)
136 2uy1_A Cleavage stimulation fa 97.5 0.1 3.5E-06 52.1 31.5 340 116-500 18-404 (493)
137 2lni_A Stress-induced-phosphop 97.5 0.0033 1.1E-07 49.7 14.1 101 338-440 13-113 (133)
138 4ga2_A E3 SUMO-protein ligase 97.5 0.00097 3.3E-08 54.9 11.0 134 247-390 10-148 (150)
139 3gyz_A Chaperone protein IPGC; 97.5 0.0015 5.3E-08 53.8 12.1 96 116-221 39-134 (151)
140 4f3v_A ESX-1 secretion system 97.5 0.0018 6E-08 59.2 13.3 185 246-441 18-238 (282)
141 3upv_A Heat shock protein STI1 97.4 0.0038 1.3E-07 49.2 13.8 97 342-440 5-101 (126)
142 2xcb_A PCRH, regulatory protei 97.4 0.0035 1.2E-07 50.8 13.8 98 340-440 17-115 (142)
143 2fbn_A 70 kDa peptidylprolyl i 97.4 0.00047 1.6E-08 59.7 8.9 98 342-440 39-151 (198)
144 2kck_A TPR repeat; tetratricop 97.4 0.0021 7.3E-08 48.9 11.6 94 344-439 9-105 (112)
145 4gco_A Protein STI-1; structur 97.4 0.003 1E-07 50.2 12.7 96 116-221 16-111 (126)
146 1p5q_A FKBP52, FK506-binding p 97.4 0.0048 1.6E-07 58.5 16.1 146 268-438 146-292 (336)
147 2lni_A Stress-induced-phosphop 97.4 0.0034 1.2E-07 49.6 13.0 97 115-221 18-114 (133)
148 2e2e_A Formate-dependent nitri 97.4 0.0013 4.3E-08 55.6 10.8 119 125-263 22-144 (177)
149 3q49_B STIP1 homology and U bo 97.4 0.0063 2.2E-07 48.5 14.5 99 340-440 8-106 (137)
150 4f3v_A ESX-1 secretion system 97.4 0.0024 8E-08 58.3 12.8 195 168-370 18-237 (282)
151 1elw_A TPR1-domain of HOP; HOP 97.4 0.0069 2.3E-07 46.4 14.2 97 342-440 5-101 (118)
152 1p5q_A FKBP52, FK506-binding p 97.4 0.0074 2.5E-07 57.1 17.0 129 341-476 147-291 (336)
153 2dba_A Smooth muscle cell asso 97.3 0.0063 2.2E-07 49.1 14.3 99 339-440 26-128 (148)
154 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0063 2.2E-07 50.6 14.4 99 340-440 10-108 (164)
155 4gcn_A Protein STI-1; structur 97.3 0.0075 2.6E-07 47.8 14.1 105 342-450 9-120 (127)
156 2uy1_A Cleavage stimulation fa 97.3 0.18 6.1E-06 50.3 31.6 324 111-476 45-410 (493)
157 2kck_A TPR repeat; tetratricop 97.3 0.0034 1.2E-07 47.7 11.4 98 114-221 7-107 (112)
158 1elw_A TPR1-domain of HOP; HOP 97.3 0.0051 1.7E-07 47.2 12.5 97 115-221 6-102 (118)
159 2vgx_A Chaperone SYCD; alterna 97.3 0.0042 1.4E-07 50.9 12.3 96 116-221 24-119 (148)
160 3ro3_A PINS homolog, G-protein 97.2 0.0045 1.5E-07 50.6 12.5 96 343-438 51-156 (164)
161 2xcb_A PCRH, regulatory protei 97.2 0.0048 1.6E-07 50.0 12.4 96 116-221 21-116 (142)
162 2c2l_A CHIP, carboxy terminus 97.2 0.019 6.5E-07 52.7 17.5 193 268-478 3-198 (281)
163 3upv_A Heat shock protein STI1 97.2 0.0067 2.3E-07 47.7 12.6 97 115-221 6-102 (126)
164 2fbn_A 70 kDa peptidylprolyl i 97.1 0.0072 2.5E-07 52.1 13.2 98 342-441 89-187 (198)
165 3q7a_A Farnesyltransferase alp 97.1 0.16 5.6E-06 47.7 23.2 133 125-282 66-214 (349)
166 3sz7_A HSC70 cochaperone (SGT) 97.1 0.0072 2.5E-07 50.2 12.5 97 115-221 13-109 (164)
167 3q49_B STIP1 homology and U bo 97.1 0.0091 3.1E-07 47.5 12.7 99 113-221 9-107 (137)
168 1elr_A TPR2A-domain of HOP; HO 97.0 0.0054 1.8E-07 48.1 10.7 98 115-221 6-109 (131)
169 3k9i_A BH0479 protein; putativ 97.0 0.0013 4.6E-08 51.3 6.6 59 380-439 31-89 (117)
170 3ro3_A PINS homolog, G-protein 97.0 0.0059 2E-07 49.8 10.9 132 342-477 10-156 (164)
171 1hxi_A PEX5, peroxisome target 97.0 0.0076 2.6E-07 47.3 10.7 96 116-221 20-115 (121)
172 2xev_A YBGF; tetratricopeptide 96.9 0.027 9.4E-07 44.0 13.7 90 348-440 9-105 (129)
173 1wao_1 Serine/threonine protei 96.8 0.0043 1.5E-07 61.9 10.2 116 316-435 16-134 (477)
174 1hxi_A PEX5, peroxisome target 96.8 0.015 5.3E-07 45.5 11.5 91 346-439 22-113 (121)
175 2xev_A YBGF; tetratricopeptide 96.8 0.021 7.1E-07 44.8 12.1 95 117-221 6-106 (129)
176 3q7a_A Farnesyltransferase alp 96.7 0.4 1.4E-05 45.1 24.5 113 170-299 68-196 (349)
177 2dba_A Smooth muscle cell asso 96.6 0.022 7.6E-07 45.7 11.4 96 115-221 30-129 (148)
178 3k9i_A BH0479 protein; putativ 96.6 0.0033 1.1E-07 49.0 5.9 86 168-263 2-90 (117)
179 4gcn_A Protein STI-1; structur 96.6 0.014 4.8E-07 46.2 9.6 97 116-221 11-113 (127)
180 3n71_A Histone lysine methyltr 96.5 0.011 3.9E-07 58.8 10.3 124 316-439 319-463 (490)
181 3rkv_A Putative peptidylprolyl 96.5 0.11 3.9E-06 42.6 15.0 112 342-456 12-141 (162)
182 1kt0_A FKBP51, 51 kDa FK506-bi 96.4 0.072 2.5E-06 52.6 15.5 94 343-439 270-379 (457)
183 1wao_1 Serine/threonine protei 96.4 0.018 6E-07 57.5 10.9 114 244-365 16-134 (477)
184 1klx_A Cysteine rich protein B 96.3 0.18 6.3E-06 40.3 14.9 50 389-441 74-127 (138)
185 1kt0_A FKBP51, 51 kDa FK506-bi 96.3 0.042 1.4E-06 54.4 13.0 96 342-439 318-414 (457)
186 1ihg_A Cyclophilin 40; ppiase 96.2 0.068 2.3E-06 51.2 13.9 97 343-440 225-336 (370)
187 3n71_A Histone lysine methyltr 96.1 0.024 8.3E-07 56.4 10.2 127 350-479 318-464 (490)
188 2hr2_A Hypothetical protein; a 96.0 0.15 5.3E-06 41.8 12.9 110 344-455 14-151 (159)
189 2kat_A Uncharacterized protein 95.9 0.076 2.6E-06 40.7 10.5 80 132-220 3-82 (115)
190 1ihg_A Cyclophilin 40; ppiase 95.8 0.076 2.6E-06 50.8 11.9 90 340-432 272-362 (370)
191 3rkv_A Putative peptidylprolyl 95.7 0.073 2.5E-06 43.8 10.2 96 116-221 14-127 (162)
192 1klx_A Cysteine rich protein B 95.6 0.39 1.3E-05 38.3 13.8 81 319-406 39-127 (138)
193 1na3_A Designed protein CTPR2; 95.5 0.25 8.5E-06 35.4 11.4 59 343-402 11-69 (91)
194 2if4_A ATFKBP42; FKBP-like, al 95.3 0.051 1.7E-06 51.3 8.8 95 378-477 232-326 (338)
195 3ma5_A Tetratricopeptide repea 95.3 0.08 2.7E-06 39.5 8.3 56 312-369 13-69 (100)
196 3mkq_A Coatomer beta'-subunit; 95.3 1.2 4E-05 47.2 20.2 151 245-437 610-762 (814)
197 2kat_A Uncharacterized protein 95.2 0.14 4.7E-06 39.1 9.6 26 343-368 21-46 (115)
198 2l6j_A TPR repeat-containing p 95.1 0.041 1.4E-06 41.6 6.2 62 378-440 6-67 (111)
199 2l6j_A TPR repeat-containing p 95.0 0.11 3.8E-06 39.0 8.5 54 314-369 12-66 (111)
200 2if4_A ATFKBP42; FKBP-like, al 94.9 0.074 2.5E-06 50.2 8.6 127 116-263 182-328 (338)
201 3ly7_A Transcriptional activat 94.8 1.2 4.1E-05 42.0 16.1 38 265-304 190-231 (372)
202 2hr2_A Hypothetical protein; a 94.7 0.41 1.4E-05 39.2 11.3 53 316-368 67-129 (159)
203 3ma5_A Tetratricopeptide repea 94.5 0.27 9.4E-06 36.5 9.4 54 384-438 15-68 (100)
204 1dce_A Protein (RAB geranylger 94.5 2.6 8.8E-05 42.7 19.2 151 123-297 38-219 (567)
205 1na3_A Designed protein CTPR2; 94.5 0.4 1.4E-05 34.2 10.0 78 116-203 12-89 (91)
206 3mkq_A Coatomer beta'-subunit; 94.4 0.45 1.6E-05 50.4 14.3 150 168-367 611-762 (814)
207 3qwp_A SET and MYND domain-con 94.4 0.24 8.2E-06 48.3 10.9 92 348-439 294-399 (429)
208 3qww_A SET and MYND domain-con 94.4 0.16 5.6E-06 49.5 9.6 50 319-368 312-367 (433)
209 3dss_A Geranylgeranyl transfer 93.8 4.2 0.00014 37.8 26.7 143 122-281 38-191 (331)
210 1wy6_A Hypothetical protein ST 93.6 2.1 7.2E-05 33.7 15.9 137 245-407 18-156 (172)
211 3qww_A SET and MYND domain-con 93.4 0.33 1.1E-05 47.3 9.9 90 248-368 312-409 (433)
212 1zu2_A Mitochondrial import re 93.4 0.21 7.1E-06 41.0 7.0 91 124-226 13-124 (158)
213 1zu2_A Mitochondrial import re 93.4 0.33 1.1E-05 39.8 8.1 109 319-457 16-135 (158)
214 1dce_A Protein (RAB geranylger 93.3 2.6 8.9E-05 42.7 16.6 116 321-440 89-221 (567)
215 1wy6_A Hypothetical protein ST 93.2 2.5 8.7E-05 33.2 13.9 67 375-442 90-156 (172)
216 3mkq_B Coatomer subunit alpha; 92.8 1.9 6.4E-05 35.9 11.9 123 319-476 19-141 (177)
217 3ly7_A Transcriptional activat 92.7 1.9 6.4E-05 40.6 13.4 150 113-275 194-349 (372)
218 3qwp_A SET and MYND domain-con 92.4 0.58 2E-05 45.6 9.9 94 117-219 291-399 (429)
219 1pc2_A Mitochondria fission pr 91.2 2 7E-05 34.7 10.2 81 358-440 15-100 (152)
220 1wdy_A 2-5A-dependent ribonucl 90.8 5.9 0.0002 35.2 14.5 203 168-399 14-239 (285)
221 3dss_A Geranylgeranyl transfer 90.6 11 0.00037 35.0 25.2 181 169-369 42-266 (331)
222 2kc7_A BFR218_protein; tetratr 90.2 1.5 5E-05 31.9 8.2 56 121-185 8-64 (99)
223 2kc7_A BFR218_protein; tetratr 90.2 2.5 8.5E-05 30.6 9.5 52 387-439 11-63 (99)
224 3mkq_B Coatomer subunit alpha; 90.1 7.1 0.00024 32.4 12.8 100 124-260 16-115 (177)
225 1pc2_A Mitochondria fission pr 88.9 3.7 0.00013 33.2 9.9 81 132-221 16-101 (152)
226 4gns_B Protein CSD3, chitin bi 88.6 9.8 0.00033 39.6 15.3 128 236-367 246-397 (754)
227 2v5f_A Prolyl 4-hydroxylase su 88.0 3.2 0.00011 30.8 8.7 54 168-221 17-76 (104)
228 3u64_A Protein TP_0956; tetrat 87.7 4 0.00014 37.0 10.3 66 341-408 199-272 (301)
229 1wdy_A 2-5A-dependent ribonucl 87.5 2.5 8.6E-05 37.8 9.4 109 195-326 6-123 (285)
230 3bee_A Putative YFRE protein; 86.7 7.4 0.00025 28.2 9.8 66 375-441 5-73 (93)
231 2wpv_A GET4, UPF0363 protein Y 85.2 22 0.00077 32.5 18.5 167 193-403 35-215 (312)
232 2ff4_A Probable regulatory pro 84.7 10 0.00036 36.0 12.5 71 381-452 176-251 (388)
233 1v54_E Cytochrome C oxidase po 83.6 7.6 0.00026 28.7 8.1 60 359-419 28-87 (109)
234 2v5f_A Prolyl 4-hydroxylase su 83.4 9.7 0.00033 28.1 9.4 30 410-439 45-74 (104)
235 1v54_E Cytochrome C oxidase po 83.2 3.9 0.00013 30.2 6.4 51 171-221 25-75 (109)
236 1k1a_A B-cell lymphoma 3-encod 83.0 11 0.00039 32.4 11.3 62 197-268 12-73 (241)
237 3bee_A Putative YFRE protein; 82.9 8.2 0.00028 28.0 8.5 70 146-221 4-73 (93)
238 3u64_A Protein TP_0956; tetrat 82.8 12 0.00043 33.7 11.1 91 358-450 180-281 (301)
239 1nzn_A CGI-135 protein, fissio 82.0 8.8 0.0003 29.8 8.6 83 356-440 16-103 (126)
240 4h7y_A Dual specificity protei 81.6 19 0.00065 28.9 10.8 114 340-456 12-138 (161)
241 2ff4_A Probable regulatory pro 78.8 5.7 0.0002 37.9 8.1 65 312-378 177-247 (388)
242 4g8k_A 2-5A-dependent ribonucl 78.3 14 0.0005 33.9 10.8 263 168-474 34-322 (337)
243 2p58_C Putative type III secre 76.6 12 0.0004 27.6 7.0 77 127-221 21-99 (116)
244 3lpz_A GET4 (YOR164C homolog); 74.9 52 0.0018 30.3 21.2 165 193-402 37-213 (336)
245 2uwj_G Type III export protein 74.3 11 0.00038 27.7 6.4 77 127-221 20-98 (115)
246 2y69_E Cytochrome C oxidase su 74.3 18 0.00063 28.3 8.1 60 359-419 71-130 (152)
247 4h7y_A Dual specificity protei 74.2 32 0.0011 27.6 11.4 108 112-225 12-128 (161)
248 4g8k_A 2-5A-dependent ribonucl 73.0 29 0.00099 31.8 11.3 269 195-502 26-320 (337)
249 1n11_A Ankyrin; clathrin, BAND 72.6 35 0.0012 32.6 12.2 83 168-268 23-107 (437)
250 4gns_B Protein CSD3, chitin bi 72.4 91 0.0031 32.4 15.4 52 385-437 346-397 (754)
251 2y69_E Cytochrome C oxidase su 72.2 11 0.00038 29.5 6.4 51 171-221 68-118 (152)
252 3esl_A Checkpoint serine/threo 70.4 28 0.00094 29.4 9.1 56 319-374 93-148 (202)
253 1k1a_A B-cell lymphoma 3-encod 69.6 8.9 0.00031 33.1 6.5 180 275-475 12-205 (241)
254 1n11_A Ankyrin; clathrin, BAND 69.5 39 0.0013 32.2 11.7 74 418-500 315-394 (437)
255 4b4t_P 26S proteasome regulato 68.3 88 0.003 30.2 20.3 258 169-438 29-322 (445)
256 3utm_A Tankyrase-1; tankyrase, 67.9 71 0.0024 28.9 13.1 125 149-305 23-152 (351)
257 3hra_A Ankyrin repeat family p 66.4 17 0.00059 30.1 7.5 16 200-215 11-26 (201)
258 1nzn_A CGI-135 protein, fissio 66.4 43 0.0015 25.9 10.4 50 248-298 15-66 (126)
259 3eu9_A Huntingtin-interacting 66.0 44 0.0015 28.3 10.4 55 200-268 15-69 (240)
260 3b7b_A Euchromatic histone-lys 65.9 32 0.0011 29.3 9.5 25 198-226 15-39 (237)
261 3kea_A K1L; tropism, ANK repea 65.0 43 0.0015 29.8 10.3 51 168-226 40-90 (285)
262 3ljn_A Hypothetical protein; a 60.9 61 0.0021 29.9 11.0 218 146-400 16-265 (364)
263 4b4t_P 26S proteasome regulato 60.8 1.2E+02 0.0042 29.2 19.6 189 247-439 29-246 (445)
264 4fhn_B Nucleoporin NUP120; pro 60.1 2E+02 0.007 31.6 17.0 176 277-456 850-1076(1139)
265 4a1g_A Mitotic checkpoint seri 60.0 33 0.0011 27.5 7.3 57 319-375 79-135 (152)
266 3t8k_A Uncharacterized protein 56.3 53 0.0018 27.1 8.6 61 241-306 10-71 (186)
267 2r9g_A AAA ATPase, central reg 55.9 91 0.0031 26.2 10.2 33 275-308 17-51 (204)
268 4fhn_B Nucleoporin NUP120; pro 54.9 2.5E+02 0.0085 30.9 16.5 146 312-470 818-991 (1139)
269 4b4t_R RPN7, 26S proteasome re 54.9 1.3E+02 0.0043 28.8 12.2 58 311-368 136-195 (429)
270 3aji_A 26S proteasome non-ATPa 54.8 80 0.0027 26.5 9.9 182 240-445 9-199 (231)
271 3d9h_A CDNA FLJ77766, highly s 53.4 86 0.003 27.7 10.2 222 193-445 14-249 (285)
272 4fke_A Aminopeptidase N; zinc 51.6 2E+02 0.0068 30.8 14.0 162 312-479 692-864 (909)
273 3bge_A Predicted ATPase; struc 51.2 72 0.0025 26.7 8.1 34 275-308 10-45 (201)
274 2wvi_A Mitotic checkpoint seri 51.2 41 0.0014 27.3 6.6 54 322-375 77-130 (164)
275 3eu9_A Huntingtin-interacting 50.4 80 0.0027 26.5 9.3 12 168-179 51-62 (240)
276 3kea_A K1L; tropism, ANK repea 50.4 1.1E+02 0.0037 27.1 10.4 186 240-448 34-225 (285)
277 3bu8_A Telomeric repeat-bindin 50.1 1E+02 0.0035 26.2 8.9 48 393-440 89-143 (235)
278 3jxi_A Vanilloid receptor-rela 49.8 64 0.0022 27.9 8.6 91 168-270 14-122 (260)
279 3c1d_A Protein ORAA, regulator 49.7 99 0.0034 24.8 9.0 52 172-225 46-97 (159)
280 1zbp_A Hypothetical protein VP 48.8 43 0.0015 29.8 6.8 109 319-439 11-128 (273)
281 3ctd_A Putative ATPase, AAA fa 48.7 98 0.0034 26.2 8.6 36 274-309 37-74 (213)
282 3esl_A Checkpoint serine/threo 48.4 1E+02 0.0035 25.9 8.8 58 389-446 92-150 (202)
283 2d2s_A Exocyst complex compone 48.4 1.1E+02 0.0038 26.5 9.5 28 410-437 90-117 (235)
284 2zu6_B Programmed cell death p 48.0 77 0.0026 28.8 8.7 25 194-218 6-30 (307)
285 3jxi_A Vanilloid receptor-rela 47.9 25 0.00086 30.6 5.5 63 197-260 8-72 (260)
286 3l6a_A Eukaryotic translation 47.6 24 0.00081 33.2 5.4 21 311-331 17-38 (364)
287 3txn_A 26S proteasome regulato 47.1 1.9E+02 0.0065 27.3 22.6 229 240-476 25-281 (394)
288 1wty_A Hypothetical protein TT 45.8 77 0.0026 24.0 7.2 78 249-335 3-82 (119)
289 4aez_C MAD3, mitotic spindle c 45.6 63 0.0022 27.7 7.2 54 321-374 130-183 (223)
290 3aji_A 26S proteasome non-ATPa 44.3 30 0.001 29.4 5.4 171 311-502 9-191 (231)
291 3t8k_A Uncharacterized protein 44.1 1.3E+02 0.0045 24.6 11.5 130 168-306 15-150 (186)
292 3lvg_A Clathrin heavy chain 1; 43.1 0.31 1.1E-05 47.4 -8.2 235 234-499 54-323 (624)
293 2nsz_A Programmed cell death p 42.6 1.1E+02 0.0039 23.5 8.3 53 168-221 19-73 (129)
294 2rfa_A Transient receptor pote 42.4 95 0.0033 26.1 8.4 55 417-476 157-220 (232)
295 3hra_A Ankyrin repeat family p 42.4 70 0.0024 26.2 7.3 16 199-214 77-92 (201)
296 2ijq_A Hypothetical protein; s 41.2 1.3E+02 0.0046 24.2 8.2 52 168-219 44-103 (161)
297 2ion_A PDCD4, programmed cell 41.0 1.4E+02 0.0046 23.9 8.3 53 168-221 21-75 (152)
298 1ug3_A EIF4GI, eukaryotic prot 40.4 21 0.00072 33.1 3.8 20 311-330 16-36 (339)
299 1awc_B Protein (GA binding pro 38.0 91 0.0031 24.2 7.0 18 485-502 135-152 (153)
300 3ffl_A Anaphase-promoting comp 37.3 1.7E+02 0.0057 23.8 9.8 19 417-435 128-146 (167)
301 2lwd_A Probable ATP-dependent 37.0 1.2E+02 0.0042 22.2 7.0 59 98-159 28-86 (100)
302 2ijq_A Hypothetical protein; s 36.1 1.1E+02 0.0037 24.8 6.8 54 127-184 46-103 (161)
303 3txn_A 26S proteasome regulato 35.6 2.9E+02 0.0098 26.1 16.0 165 271-438 21-208 (394)
304 3ljn_A Hypothetical protein; a 35.6 2.6E+02 0.0087 25.5 15.1 221 189-436 16-266 (364)
305 2fu4_A Ferric uptake regulatio 35.0 1.1E+02 0.0037 21.0 6.5 59 367-426 8-67 (83)
306 2etb_A Transient receptor pote 34.9 1.7E+02 0.0057 25.0 8.9 65 196-262 4-71 (256)
307 2pnn_A Transient receptor pote 34.8 71 0.0024 27.9 6.4 191 195-401 14-255 (273)
308 3o48_A Mitochondria fission 1 34.7 1.6E+02 0.0055 22.9 9.8 72 373-446 37-111 (134)
309 4b4t_R RPN7, 26S proteasome re 34.4 3.1E+02 0.011 26.1 14.0 131 249-381 109-248 (429)
310 2keb_A DNA polymerase subunit 34.3 1.3E+02 0.0046 21.8 6.8 56 395-452 28-88 (101)
311 2qfz_A TBC1 domain family memb 34.2 91 0.0031 28.8 7.2 82 398-479 231-315 (345)
312 4a1g_A Mitotic checkpoint seri 33.9 1.3E+02 0.0046 23.9 7.0 70 145-225 65-135 (152)
313 1bd8_A P19INK4D CDK4/6 inhibit 32.1 54 0.0019 25.5 4.7 17 485-501 135-151 (156)
314 2wvi_A Mitotic checkpoint seri 31.8 1.4E+02 0.0049 24.1 7.0 54 394-447 78-132 (164)
315 1zbp_A Hypothetical protein VP 31.4 1.1E+02 0.0036 27.3 6.5 71 121-200 5-77 (273)
316 2uwj_G Type III export protein 30.3 1.6E+02 0.0056 21.6 7.1 79 319-406 20-98 (115)
317 3twr_A Tankyrase-2; ankyrin re 30.3 1.9E+02 0.0066 22.4 8.0 85 168-269 17-103 (165)
318 2p58_C Putative type III secre 30.1 1.7E+02 0.0057 21.6 7.7 78 319-405 21-98 (116)
319 2y1l_E Darpin-8.4; hydrolase-i 30.0 1E+02 0.0036 24.3 6.2 17 485-501 148-164 (169)
320 3d9h_A CDNA FLJ77766, highly s 29.6 1.9E+02 0.0065 25.4 8.4 12 168-179 101-112 (285)
321 1ug3_A EIF4GI, eukaryotic prot 29.2 61 0.0021 29.9 5.0 53 168-221 23-76 (339)
322 4b4t_S RPN3, 26S proteasome re 29.1 1.4E+02 0.0047 29.4 7.5 138 194-335 139-300 (523)
323 2f8y_A Notch homolog 1, transl 28.7 81 0.0028 26.3 5.5 169 311-502 28-210 (223)
324 4fke_A Aminopeptidase N; zinc 28.3 5.7E+02 0.019 27.2 14.7 160 273-440 690-860 (909)
325 3utm_A Tankyrase-1; tankyrase, 28.0 3.2E+02 0.011 24.3 12.8 83 168-268 67-151 (351)
326 3qye_A TBC1 domain family memb 27.9 82 0.0028 28.9 5.7 110 362-478 209-325 (331)
327 2xig_A Ferric uptake regulatio 27.8 2.2E+02 0.0076 22.4 7.6 61 366-427 17-77 (150)
328 2fe3_A Peroxide operon regulat 27.4 2.2E+02 0.0075 22.2 7.9 63 362-425 8-70 (145)
329 3bge_A Predicted ATPase; struc 27.4 2.7E+02 0.0094 23.3 8.5 60 347-406 10-77 (201)
330 2xai_A ASB-9, ankyrin repeat a 26.7 3E+02 0.01 23.5 9.8 8 350-357 172-179 (261)
331 2r9g_A AAA ATPase, central reg 26.3 2.9E+02 0.0099 23.2 10.0 60 347-407 17-84 (204)
332 3pvs_A Replication-associated 26.3 4E+02 0.014 25.5 10.5 99 356-456 166-300 (447)
333 1y8m_A FIS1; mitochondria, unk 26.2 2.4E+02 0.0082 22.2 11.8 68 373-440 36-106 (144)
334 2etb_A Transient receptor pote 26.1 72 0.0025 27.5 4.8 55 347-402 5-69 (256)
335 1mzb_A Ferric uptake regulatio 25.5 2.1E+02 0.0073 21.9 6.9 34 392-425 34-67 (136)
336 2nsz_A Programmed cell death p 25.4 2.3E+02 0.0078 21.7 8.3 26 343-368 9-34 (129)
337 2ion_A PDCD4, programmed cell 25.2 2.2E+02 0.0074 22.6 6.9 64 343-407 11-76 (152)
338 4b93_B Ankyrin repeat domain-c 25.1 51 0.0018 29.1 3.6 21 268-290 8-28 (269)
339 2qx5_A Nucleoporin NIC96; mRNA 24.4 91 0.0031 31.9 5.5 49 233-282 151-199 (661)
340 3eyy_A Putative iron uptake re 24.3 1.8E+02 0.006 22.8 6.3 57 367-425 10-66 (145)
341 3b7b_A Euchromatic histone-lys 24.1 77 0.0026 26.8 4.5 169 311-502 14-196 (237)
342 3lpz_A GET4 (YOR164C homolog); 24.0 4.2E+02 0.014 24.3 21.9 162 240-438 41-214 (336)
343 1d1d_A Protein (capsid protein 23.9 2E+02 0.0069 25.3 6.9 50 109-159 34-83 (262)
344 3v30_A DNA-binding protein rfx 23.7 93 0.0032 24.6 4.7 120 312-445 6-129 (172)
345 3lvg_A Clathrin heavy chain 1; 23.6 2.1 7.3E-05 41.7 -6.1 81 410-500 53-136 (624)
346 3twr_A Tankyrase-2; ankyrin re 23.5 79 0.0027 24.9 4.2 115 345-475 9-130 (165)
347 2qq8_A TBC1 domain family memb 23.4 1.1E+02 0.0038 28.1 5.6 44 363-406 215-258 (334)
348 3ygs_P Procaspase 9; apoptosis 23.4 2.1E+02 0.0072 20.6 7.0 66 135-213 25-90 (97)
349 4aez_C MAD3, mitotic spindle c 23.1 2.1E+02 0.007 24.5 6.7 54 172-225 130-184 (223)
350 3ldz_A STAM-1, signal transduc 22.7 2.4E+02 0.0081 22.0 6.7 69 118-188 64-138 (140)
351 3qwl_A TBC1 domain family memb 22.5 1.1E+02 0.0039 27.5 5.3 83 398-480 189-271 (294)
352 2keb_A DNA polymerase subunit 22.2 2.3E+02 0.0079 20.6 5.8 49 429-477 27-76 (101)
353 3eiq_C Programmed cell death p 22.2 4.7E+02 0.016 24.2 14.2 26 193-218 56-81 (358)
354 2w57_A Ferric uptake regulatio 21.9 2.5E+02 0.0084 22.1 6.7 62 363-425 4-66 (150)
355 2d2s_A Exocyst complex compone 21.6 3.9E+02 0.013 23.0 10.2 89 119-219 24-119 (235)
356 2rfa_A Transient receptor pote 21.4 3.5E+02 0.012 22.3 11.9 159 120-303 7-184 (232)
357 4gpm_A Engineered protein OR26 21.4 2.3E+02 0.008 22.5 6.7 18 311-328 7-24 (169)
358 1oai_A Nuclear RNA export fact 21.3 74 0.0025 20.7 2.8 16 206-221 35-50 (59)
359 2b7e_A PRE-mRNA processing pro 21.1 87 0.003 20.4 3.0 32 251-282 3-35 (59)
360 1mzb_A Ferric uptake regulatio 21.1 2.5E+02 0.0085 21.5 6.5 51 343-393 19-70 (136)
361 2f6m_A Suppressor protein STP2 21.0 1.6E+02 0.0054 19.6 4.3 43 116-159 5-47 (65)
362 2xig_A Ferric uptake regulatio 21.0 3E+02 0.01 21.5 7.3 51 343-393 28-78 (150)
363 3ctd_A Putative ATPase, AAA fa 20.6 3.9E+02 0.013 22.6 9.2 62 346-407 37-106 (213)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.9e-33 Score=279.99 Aligned_cols=207 Identities=7% Similarity=0.040 Sum_probs=135.7
Q ss_pred ccHhhHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh-
Q 010739 170 RGVGDVVDLLVDMDCVGLKPGF-SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE- 247 (502)
Q Consensus 170 ~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~- 247 (502)
+....+..+.+++.+.+..+.. ..++.+|++|+|.|++++|.++|++|.+.|+.||..|||+ ++..+...
T Consensus 4 ~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~--------Li~~c~~~~ 75 (501)
T 4g26_A 4 HMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNV--------LLYVCSLAE 75 (501)
T ss_dssp --------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHH--------HHHHHTTCC
T ss_pred cccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHH--------HHHHHHhCC
Confidence 3345566777788888875544 4689999999999999999999999999999999999999 88877764
Q ss_pred --------CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739 248 --------GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS- 318 (502)
Q Consensus 248 --------g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~- 318 (502)
+.+++|.++|++|...|+.||..|||++|++|++. |++++|.++|++|.+.|+.||..||| .||.+|++
T Consensus 76 ~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd~~tyn-~lI~~~~~~ 153 (501)
T 4g26_A 76 AATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAK-DDPEMAFDMVKQMKAFGIQPRLRSYG-PALFGFCRK 153 (501)
T ss_dssp CCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCCCHHHHH-HHHHHHHHT
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccceeh-HHHHHHHHC
Confidence 45899999999999999999999999999999999 89999999999999999988777554 34444444
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICA 387 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 387 (502)
|++++|.++|++|...|..+ |..||++||.+|++.|++++|+++|++|++.|+.|+..||++++..|+
T Consensus 154 g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 44444444444444444333 234444444444444444444444444444444444444444444444
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-32 Score=277.72 Aligned_cols=205 Identities=13% Similarity=0.036 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-Cc--------
Q 010739 251 VDAIKLVIHLRESGLKPEV-YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DL-------- 320 (502)
Q Consensus 251 ~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~-------- 320 (502)
..+..+.+++++.+..+.. ..++.+|++|++. |++++|+++|++|.+.|+.||.+||| +||.+|++ +.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn-~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKK-GDVLEALRLYDEARRNGVQLSQYHYN-VLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCCCCHHHHH-HHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHhCCchhhhhhcc
Confidence 3456677788888776654 5689999999999 89999999999999999999999999 79999986 54
Q ss_pred -HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739 321 -LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL 399 (502)
Q Consensus 321 -~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~ 399 (502)
+++|.++|++|...|..+ |.+|||+||.+|++.|++++|+++|++|.+.|+.||..|||++|.+|++.|++++|.++|
T Consensus 85 ~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 789999999999999776 679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739 400 SRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK 458 (502)
Q Consensus 400 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (502)
++|...|+.||..||++||.+|++.|++++|.++|++|++.|+.|+..||+.++..|+.
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999964
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.6e-28 Score=252.05 Aligned_cols=380 Identities=12% Similarity=-0.004 Sum_probs=288.9
Q ss_pred HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739 86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK 164 (502)
Q Consensus 86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~ 164 (502)
+++|+.+|+++. ..| .+..+..+...|.+.|++ +.|..+|+.+... .++..+++.++.+++
T Consensus 100 ~~~A~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~-~~~~~~~~~l~~~~~----- 161 (597)
T 2xpi_A 100 YKCAAFVGEKVLDITG-----------NPNDAFWLAQVYCCTGDY-ARAKCLLTKEDLY-NRSSACRYLAAFCLV----- 161 (597)
T ss_dssp HHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHTTCH-HHHHHHHHHTCGG-GTCHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHHHhhCC-----------CchHHHHHHHHHHHcCcH-HHHHHHHHHHhcc-ccchhHHHHHHHHHH-----
Confidence 778888888765 112 234478899999999999 8999999988644 368899999999999
Q ss_pred hhhhhccHhhHHHHHHHH-hhC--------------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCcc-
Q 010739 165 YIEEERGVGDVVDLLVDM-DCV--------------GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGD- 228 (502)
Q Consensus 165 ~~~~~~~~~~a~~~~~~m-~~~--------------g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t- 228 (502)
+.|++++|..+|+++ ... |.+++..+|+.++.+|.+.|++++|.++|++|.+.+ |+..+
T Consensus 162 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 236 (597)
T 2xpi_A 162 ---KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEA 236 (597)
T ss_dssp ---HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred ---HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHH
Confidence 999999999999953 322 345678999999999999999999999999998765 32111
Q ss_pred ---------------------------------------------ccc-----------cC--CCCchH-----HHHHHH
Q 010739 229 ---------------------------------------------GEG-----------QQ--GGPTGY-----LAWKMM 245 (502)
Q Consensus 229 ---------------------------------------------y~~-----------~~--~~~~~~-----~~~~~~ 245 (502)
|.. +. ..+.+. +...+.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 000 00 001111 333344
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG 324 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a 324 (502)
..|++++|+++|++|...+ +.+..+|+.++.++.+. |+.++|.++++++.+.. ..+..+++ .+..+|.+ |++++|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRH-PEKAVTWL-AVGIYYLCVNKISEA 392 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTSHHHHH-HHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhC-cccHHHHH-HHHHHHHHhccHHHH
Confidence 4567777777777766553 22556666777777776 56777777776665332 23455555 58888888 999999
Q ss_pred HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
.++|+++..... .+..+|+.++.+|++.|++++|.++|++|.+.+ ..+..+|+.+..+|.+.|++++|.++|+.+..
T Consensus 393 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 393 RRYFSKSSTMDP--QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988877543 345689999999999999999999999988653 34778899999999999999999999998877
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739 405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPE--YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
.. ..+..+|+.++..|.+.|++++|.++|++|.+. +..|+ ..+|..+..+|.+ .|++++|.+.++++.+
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----LKMYDAAIDALNQGLL 544 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence 65 347888999999999999999999999999876 77888 7899999999987 7999999999988754
Q ss_pred cC----CchhHHHHHHHhhcchhhhh
Q 010739 479 TS----LIGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 479 ~~----~~~~~li~~y~~~g~~~~~~ 500 (502)
.. ..+..+...|.+.|+.+.+.
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 32 25567888999999887764
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.7e-26 Score=238.27 Aligned_cols=342 Identities=11% Similarity=-0.046 Sum_probs=287.5
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHh-------------------------------hhh
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMC-------------------------------SWV 162 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~-------------------------------~~~ 162 (502)
..|+.++.+|.+.|++ ++|+++|++|.+.+..+...+..+...+. ...
T Consensus 201 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNF-DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 3499999999999999 89999999999887335555544422110 001
Q ss_pred hhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHH
Q 010739 163 KKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAW 242 (502)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~ 242 (502)
.... +.|++++|..+|++|.+. +++..+|+.++.+|.+.|++++|.++|++|.+.+ ..+..+++. ++.
T Consensus 280 ~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~--------l~~ 347 (597)
T 2xpi_A 280 NKTS-HEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPL--------HLA 347 (597)
T ss_dssp CTTT-THHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHH--------HHH
T ss_pred HHHc-CcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHH--------HHH
Confidence 1111 689999999999999876 5899999999999999999999999999999776 225555655 888
Q ss_pred HHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739 243 KMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL 321 (502)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~ 321 (502)
.+...|++++|.++|++|... .+.+..+|+.+..+|.+. |++++|.++|+++.+.. ..+..+|+ .++..|.+ |++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~g~~ 423 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCV-NKISEARRYFSKSSTMD-PQFGPAWI-GFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHcCCH
Confidence 888899999999999999865 455788999999999999 89999999999996542 22455666 69999999 999
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR 401 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~ 401 (502)
++|.++|+++....... ..+|+.+..+|.+.|++++|.++|++|.+.. ..+..+|+.+...+.+.|++++|.++++.
T Consensus 424 ~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998776444 4599999999999999999999999998753 34788999999999999999999999998
Q ss_pred HHHc----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhh
Q 010739 402 IEVM----NSLCK--KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKR 475 (502)
Q Consensus 402 m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~ 475 (502)
+... +..|+ ..+|..+..+|.+.|++++|.++|+++.+.+ ..+..+|..+...|.. .|+.++|.+.+++
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH----KKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence 8776 66787 7899999999999999999999999998876 3478999999999988 8999999999999
Q ss_pred hhhcC
Q 010739 476 LSDTS 480 (502)
Q Consensus 476 m~~~~ 480 (502)
+.+..
T Consensus 576 ~l~~~ 580 (597)
T 2xpi_A 576 SLAIS 580 (597)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 86644
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=1.2e-19 Score=178.53 Aligned_cols=365 Identities=13% Similarity=0.013 Sum_probs=291.4
Q ss_pred HHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhh
Q 010739 85 EFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVK 163 (502)
Q Consensus 85 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~ 163 (502)
.+++|++.+..+. ..|+ .+..+..+-..+.+.|+. +.|..+++...+....+..+|..+...++
T Consensus 14 ~~~~A~~~~~~~~~~~p~----------~~~~~~~l~~~~~~~~~~-~~a~~~~~~a~~~~p~~~~~~~~lg~~~~---- 78 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPD----------NTGVLLLLSSIHFQCRRL-DRSAHFSTLAIKQNPLLAEAYSNLGNVYK---- 78 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCchHHHHHHHHHHH----
Confidence 3888888887765 3333 123366667778888999 89999999998877668889999999888
Q ss_pred hhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHH
Q 010739 164 KYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWK 243 (502)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~ 243 (502)
+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.+ |+...... .+...
T Consensus 79 ----~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~-------~l~~~ 144 (388)
T 1w3b_A 79 ----ERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRS-------DLGNL 144 (388)
T ss_dssp ----HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHH-------HHHHH
T ss_pred ----HCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH-------HHHHH
Confidence 9999999999999998752 3356789999999999999999999999998764 55433222 13344
Q ss_pred HHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739 244 MMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL 321 (502)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~ 321 (502)
+...|++++|.+.|+++... .| +..+|+.+...+.+. |++++|...|+++.+. .|+.......+-..+.. |++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCT
T ss_pred HHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCH
Confidence 44569999999999999876 34 468899999999999 8999999999999664 34433322256677888 999
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR 401 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~ 401 (502)
++|...|++...... .+..+|..+...|.+.|++++|...|+++.+.. ..+..+|..+...+.+.|++++|.+.++.
T Consensus 220 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 220 DRAVAAYLRALSLSP--NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp THHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998877643 345699999999999999999999999998753 22467889999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC
Q 010739 402 IEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL 481 (502)
Q Consensus 402 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 481 (502)
+.... ..+..+++.+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+ .|+.++|...++++.+.
T Consensus 297 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~-- 368 (388)
T 1w3b_A 297 ALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRI-- 368 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTT--
T ss_pred HHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh--
Confidence 88765 4578899999999999999999999999998642 3457788888888887 79999999999988653
Q ss_pred chhHHHHHHHhhcc
Q 010739 482 IGPCLVYLYIKKYK 495 (502)
Q Consensus 482 ~~~~li~~y~~~g~ 495 (502)
.|.....|...|.
T Consensus 369 -~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 369 -SPTFADAYSNMGN 381 (388)
T ss_dssp -CTTCHHHHHHHHH
T ss_pred -CCCCHHHHHhHHH
Confidence 3334444554443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.87 E-value=2.1e-18 Score=169.59 Aligned_cols=345 Identities=11% Similarity=-0.051 Sum_probs=279.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010739 120 LVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVIS 199 (502)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 199 (502)
...+.+.|++ +.|.+.++.+.+....+...+..+...+. ..|++++|..+++...+. .+.+..+|..+..
T Consensus 6 a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--------~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~ 75 (388)
T 1w3b_A 6 AHREYQAGDF-EAAERHCMQLWRQEPDNTGVLLLLSSIHF--------QCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhc-CCCchHHHHHHHH
Confidence 3456778999 89999999998877335555555555455 889999999999988775 4568889999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHh-HHHHHHH
Q 010739 200 LYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVY-SYLIALT 277 (502)
Q Consensus 200 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-ty~~li~ 277 (502)
.|.+.|++++|.+.|+++.+.. |+.. .|.. +...+...|++++|++.|+++... .|+.. .+..+-.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK--PDFIDGYIN--------LAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGN 143 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC--cchHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 9999999999999999998754 5532 3444 667777889999999999999875 56654 4555666
Q ss_pred HHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcC
Q 010739 278 AVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAG 355 (502)
Q Consensus 278 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 355 (502)
.+... |++++|.+.|+++.+. .|+ ...+. .+...|.+ |++++|.+.|+++....... ...|..+...+...|
T Consensus 144 ~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 144 LLKAL-GRLEEAKACYLKAIET--QPNFAVAWS-NLGCVFNAQGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHTT-SCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTT
T ss_pred HHHHc-cCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcC
Confidence 67777 8999999999999654 344 34454 57778888 99999999999998875443 458999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010739 356 RGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETL 434 (502)
Q Consensus 356 ~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 434 (502)
++++|...|++..+. .| +..++..+...+...|++++|.+.++.+...+ ..+..+|..+...|.+.|++++|.+.|
T Consensus 218 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 218 IFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp CTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998764 45 47788889999999999999999999988765 235778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC----CchhHHHHHHHhhcchhhhh
Q 010739 435 TKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS----LIGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 435 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~li~~y~~~g~~~~~~ 500 (502)
+++.+.. +.+..++..+...+.. .|+.++|...++++.+.. .....+...|.+.|+.+.+.
T Consensus 295 ~~al~~~-p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 295 NTALRLC-PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhC-cccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9998763 4677889888888887 799999999999886532 14556888899999887663
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=5.8e-22 Score=205.92 Aligned_cols=150 Identities=13% Similarity=-0.013 Sum_probs=128.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010739 341 GVVHERLLAMYICAGRGLEAERQLWEMKL---VGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWL 417 (502)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~l 417 (502)
.+|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|...|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 47999999999999999999999988874 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc------CCchhHHHHHH
Q 010739 418 LRGYIKGGHI-NDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT------SLIGPCLVYLY 490 (502)
Q Consensus 418 i~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~------~~~~~~li~~y 490 (502)
|.++|+.|+. ++|.++|++|.+.|+.||..||+.++.++.+ .+-++...++...+... ....+-|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 7899999999999999999999999988876 34444444443333322 22345688888
Q ss_pred Hhhc
Q 010739 491 IKKY 494 (502)
Q Consensus 491 ~~~g 494 (502)
++.|
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8766
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=193.65 Aligned_cols=161 Identities=11% Similarity=-0.006 Sum_probs=134.2
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDC---VGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIA 223 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 223 (502)
-..|||++|+++| +.|++++|..+|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.
T Consensus 126 ~~~TynaLIdglc--------K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 126 QQQRLLAFFKCCL--------LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 3459999999999 99999999999988764 489999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCchHHHHHHHHhCc-HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC
Q 010739 224 YAEGDGEGQQGGPTGYLAWKMMVEGK-YVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSI 302 (502)
Q Consensus 224 p~~~ty~~~~~~~~~~~~~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~ 302 (502)
||++|||+ ++.++++.|+ .++|.++|++|.+.|+.||.+||++++.+..+. + .++.++++ ..++.
T Consensus 198 PDvvTYnt--------LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-~----vL~~Vrkv-~P~f~ 263 (1134)
T 3spa_A 198 PDLLSYAA--------ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-T----VLKAVHKV-KPTFS 263 (1134)
T ss_dssp CCHHHHHH--------HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-H----HHHHHGGG-CCCCC
T ss_pred CcHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-H----HHHHHHHh-CcccC
Confidence 99999999 9999999997 589999999999999999999999999877776 3 33334444 45666
Q ss_pred Cc------hhchHHHHHHHHhc-C---------cHHhHHHHHHH
Q 010739 303 AE------LDGKNLGLIEKYQS-D---------LLADGSRLSSW 330 (502)
Q Consensus 303 p~------~~~~~~~li~~~~~-g---------~~~~a~~~~~~ 330 (502)
|+ ..+.. .|.+.|.+ + ..++-...|++
T Consensus 264 p~~~~~~~~~t~~-LL~dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 264 LPPQLPPPVNTSK-LLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCCCCCCCCCCCT-TTHHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred CCCCCcccccchH-HHHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence 54 44444 46677876 5 24555566643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.80 E-value=2.9e-16 Score=157.25 Aligned_cols=312 Identities=12% Similarity=-0.024 Sum_probs=247.7
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
..+..+...+.+.|++ +.|+++|+.+.+....+...|..+..++. ..|++++|...|+++.+.+ +.+..+
T Consensus 27 ~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~ 96 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFL--------AMGKSKAALPDLTKVIQLK-MDFTAA 96 (450)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 3488888999999999 89999999999877557889999888888 8999999999999998864 346889
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC----ccccccC----CCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE----GDGEGQQ----GGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL 265 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~ty~~~~----~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 265 (502)
|..+...|.+.|++++|.+.|+++.+.+ |+. ..+..-. ..........+...|++++|++.|+++... .
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~ 173 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-C 173 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 9999999999999999999999998754 332 1111100 000000123355679999999999999876 3
Q ss_pred CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739 266 KPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH 344 (502)
Q Consensus 266 ~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (502)
+.+..++..+..++.+. |++++|.+.++++.+.. ..+...+. .+...|.. |++++|.+.|+++....... ...+
T Consensus 174 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~ 248 (450)
T 2y4t_A 174 VWDAELRELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFY-KISTLYYQLGDHELSLSEVRECLKLDQDH--KRCF 248 (450)
T ss_dssp TTCHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCChHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCh--HHHH
Confidence 34678899999999999 89999999999995542 22345554 58888888 99999999999988765433 2355
Q ss_pred HHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 010739 345 ERL------------LAMYICAGRGLEAERQLWEMKLVGKEAD-----GDLYDIVLAICASQNEGSAVSRLLSRIEVMNS 407 (502)
Q Consensus 345 ~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~ 407 (502)
..+ ...|.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|++++|.+.++.+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~- 325 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME- 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 555 78899999999999999999874 455 4578888899999999999999999887664
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010739 408 LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD 448 (502)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 448 (502)
..+...|..+..+|...|++++|.+.|++..+ +.|+...
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 364 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ 364 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence 33688999999999999999999999999987 4565443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.78 E-value=5.4e-16 Score=155.29 Aligned_cols=313 Identities=8% Similarity=-0.017 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 010739 132 CALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAV 211 (502)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 211 (502)
.+...+.........+...+..+...+. +.|++++|..+|+++.+. .+.+..+|..+..+|.+.|++++|.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLL--------AAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAAL 80 (450)
T ss_dssp -------------CHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHH
Confidence 4445555555444346778888888788 899999999999999875 3457899999999999999999999
Q ss_pred HHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH----hHHHHHHH---------
Q 010739 212 LFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV----YSYLIALT--------- 277 (502)
Q Consensus 212 ~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~li~--------- 277 (502)
..|+++.+.+ |+ ...+.. +...+...|++++|.+.|+++... .|+. ..+..+..
T Consensus 81 ~~~~~al~~~--p~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 81 PDLTKVIQLK--MDFTAARLQ--------RGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp HHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCcHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHH
Confidence 9999998875 33 223333 566667789999999999999865 4543 45555543
Q ss_pred ---HHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739 278 ---AVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC 353 (502)
Q Consensus 278 ---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 353 (502)
.+.+. |++++|...++++.+.. ..+...+. .+...|.+ |++++|.+.|+++...... +..+|+.+...|.+
T Consensus 149 ~a~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 149 QALNAFGS-GDYTAAIAFLDKILEVC-VWDAELRE-LRAECFIKEGEPRKAISDLKAASKLKND--NTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCGGGGHHHHHHHHHHHCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 37777 79999999999996542 12344444 68888988 9999999999998876433 34699999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHH
Q 010739 354 AGRGLEAERQLWEMKLVGKEADGD-LYDIV------------LAICASQNEGSAVSRLLSRIEVMNSLCK-----KKTLS 415 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l------------i~~~~~~~~~~~a~~l~~~m~~~~~~p~-----~~~~~ 415 (502)
.|++++|...|+++.+. .|+.. .+..+ ...|...|++++|.+.++.+.... |+ ...|.
T Consensus 224 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~ 299 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKE 299 (450)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHH
Confidence 99999999999999854 45443 34333 688999999999999999887754 44 44778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
.+...+.+.|++++|.+.++++.+.. +.+...|..+..+|.. .|+.++|...++...+.
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLI----EEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Confidence 89999999999999999999988753 2367888889999887 79999999999988654
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.4e-15 Score=154.75 Aligned_cols=364 Identities=10% Similarity=-0.034 Sum_probs=271.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+...-..+.+.|++ +.|+..|+.+.+.. ||...|..+..++. ..|++++|...++++.+.+ +.+..+|.
T Consensus 9 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~-p~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~ 77 (514)
T 2gw1_A 9 LKDKGNQFFRNKKY-DDAIKYYNWALELK-EDPVFYSNLSACYV--------SVGDLKKVVEMSTKALELK-PDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHTSCH-HHHHHHHHHHHHHC-CCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred HHHHHHHHHHhccH-HHHHHHHHHHHhcC-ccHHHHHhHHHHHH--------HHhhHHHHHHHHHHHhccC-hHHHHHHH
Confidence 55666778889999 89999999999887 78889998888787 8999999999999998864 34678999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc------------------------------------------cC
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG------------------------------------------QQ 233 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~------------------------------------------~~ 233 (502)
.+..+|.+.|++++|...|+++.+.+- ++...... ..
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 999999999999999999999877652 11111000 00
Q ss_pred CC------------------------C--chH-H--HHHHHH---hCcHHHHHHHHHHHHH-----cCCC--------CC
Q 010739 234 GG------------------------P--TGY-L--AWKMMV---EGKYVDAIKLVIHLRE-----SGLK--------PE 268 (502)
Q Consensus 234 ~~------------------------~--~~~-~--~~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~ 268 (502)
.. + ... + ...... .|++++|+++|+++.. ..-. .+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 00 0 000 1 111222 6999999999999987 3112 23
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL 347 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 347 (502)
..++..+...+.+. |++++|...+++..+.. |+...+. .+...|.. |++++|.+.++++........ ..|..+
T Consensus 237 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~--~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l 310 (514)
T 2gw1_A 237 AISLEHTGIFKFLK-NDPLGAHEDIKKAIELF--PRVNSYI-YMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHC--CCHHHHH-HHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhC--ccHHHHH-HHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHH
Confidence 46777888888889 89999999999986654 3344444 57777888 999999999999887654443 488999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739 348 LAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI 427 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 427 (502)
...|.+.|++++|...|++..+..- .+...+..+...+...|++++|.+.++.+.... ..+...+..+...|.+.|++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999887532 256778888889999999999999998887654 23567888899999999999
Q ss_pred HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhh
Q 010739 428 NDAAETLTKMLDLGL-YPE----YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWI 498 (502)
Q Consensus 428 ~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~ 498 (502)
++|...|+++.+..- .|+ ...+..+...+.... ..|+.++|...++...+... ....+...|.+.|+.+.
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP-TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-hcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 999999999876431 122 336666666665300 03889999999888754321 33457778888888776
Q ss_pred hh
Q 010739 499 IK 500 (502)
Q Consensus 499 ~~ 500 (502)
+.
T Consensus 468 A~ 469 (514)
T 2gw1_A 468 AI 469 (514)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.3e-15 Score=152.08 Aligned_cols=363 Identities=9% Similarity=-0.069 Sum_probs=272.9
Q ss_pred HHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhh
Q 010739 85 EFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVK 163 (502)
Q Consensus 85 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~ 163 (502)
.+++|+..|+++. ..|+ +..|..+...+.+.|++ +.|++.|+.+.+....+...|..+..++.
T Consensus 21 ~~~~A~~~~~~al~~~p~-----------~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~---- 84 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKED-----------PVFYSNLSACYVSVGDL-KKVVEMSTKALELKPDYSKVLLRRASANE---- 84 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHhcCcc-----------HHHHHhHHHHHHHHhhH-HHHHHHHHHHhccChHHHHHHHHHHHHHH----
Confidence 3888888888865 2222 44588889999999999 89999999999887557788888888888
Q ss_pred hhhhhhccHhhHHHHHHHHhhCCCC-------------------------------------------------------
Q 010739 164 KYIEEERGVGDVVDLLVDMDCVGLK------------------------------------------------------- 188 (502)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~m~~~g~~------------------------------------------------------- 188 (502)
..|++++|...|+++.+.+-.
T Consensus 85 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 85 ----GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp ----HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred ----HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 899999999999988765420
Q ss_pred -----------------------CCHHHHHHHHHHHH---hcCcHHHHHHHHHHHHH-----cCCCCCCccccccCCCCc
Q 010739 189 -----------------------PGFSMIEKVISLYW---EMEKKERAVLFVKAVLS-----RGIAYAEGDGEGQQGGPT 237 (502)
Q Consensus 189 -----------------------p~~~~y~~li~~~~---~~g~~~~A~~l~~~m~~-----~~~~p~~~ty~~~~~~~~ 237 (502)
.+...+......+. +.|++++|..+|+++.+ ..-.|+............
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 01223333333333 38999999999999987 432333210000000000
Q ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh
Q 010739 238 GYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ 317 (502)
Q Consensus 238 ~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~ 317 (502)
..+...+...|++++|.+.|++..... |+..+|..+...+... |++++|.+.+++..+..- .+...+. .+...|.
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~-~l~~~~~ 315 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR-NDSTEYYNYFDKALKLDS-NNSSVYY-HRGQMNF 315 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS-SCCTTGGGHHHHHHTTCT-TCTHHHH-HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC-CCHHHHHHHHHHHhhcCc-CCHHHHH-HHHHHHH
Confidence 014445556799999999999998874 4488888899999999 899999999998865432 2334443 5777788
Q ss_pred c-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010739 318 S-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVS 396 (502)
Q Consensus 318 ~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~ 396 (502)
. |++++|...|++......... ..|..+...|.+.|++++|...++++.+.. ..+...+..+...+...|++++|.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENI--FPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCS--HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 8 999999999999887664443 488999999999999999999999988653 235678888889999999999999
Q ss_pred HHHHHHHHcCC-CCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHH
Q 010739 397 RLLSRIEVMNS-LCK----KKTLSWLLRGYIK---GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEA 468 (502)
Q Consensus 397 ~l~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 468 (502)
+.++.+..... .++ ...+..+...|.+ .|++++|.+.|++..+.. ..+..++..+...+.. .|+.++
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~----~g~~~~ 467 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQ----QEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH----hcCHHH
Confidence 99987765432 122 3488889999999 999999999999998754 2356677777777776 799999
Q ss_pred HHHHHhhhhhcC
Q 010739 469 YLNLCKRLSDTS 480 (502)
Q Consensus 469 a~~~~~~m~~~~ 480 (502)
|...+++..+..
T Consensus 468 A~~~~~~a~~~~ 479 (514)
T 2gw1_A 468 AITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999886654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.68 E-value=3.1e-13 Score=138.35 Aligned_cols=358 Identities=8% Similarity=-0.042 Sum_probs=249.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
|..+-..+.+.|++ +.|++.|+.+.+....+...|..+..++. ..|++++|...|++..+.+ +.+..++.
T Consensus 28 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~ 97 (537)
T 3fp2_A 28 LKNRGNHFFTAKNF-NEAIKYYQYAIELDPNEPVFYSNISACYI--------STGDLEKVIEFTTKALEIK-PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHTTCC-C-CHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHhccH-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcC-CchHHHHH
Confidence 66667777888888 78888888888777457778887777777 7888888888888887753 34677888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccc--cc-------------------------cCCCCchH---------
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDG--EG-------------------------QQGGPTGY--------- 239 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty--~~-------------------------~~~~~~~~--------- 239 (502)
.+...|.+.|++++|.+.|+.+. . .|+...- .. ....+...
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLS-L--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh-c--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 88888888888888888885331 1 1111000 00 00000000
Q ss_pred ---------------------HHHHHHH------------hCcHHHHHHHHHHHHHcCCCCC--------HhHHHHHHHH
Q 010739 240 ---------------------LAWKMMV------------EGKYVDAIKLVIHLRESGLKPE--------VYSYLIALTA 278 (502)
Q Consensus 240 ---------------------~~~~~~~------------~g~~~~a~~~~~~m~~~g~~p~--------~~ty~~li~~ 278 (502)
+...... .|++++|+.+|+++... .|+ ..+|..+-..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHH
Confidence 0111110 15788999999988764 344 2345666667
Q ss_pred HHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCCh
Q 010739 279 VVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRG 357 (502)
Q Consensus 279 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (502)
+... +++++|...+++..+. .|+...+. .+...|.. |++++|.+.|++........ ..+|..+...|.+.|++
T Consensus 253 ~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 253 HFLK-NNLLDAQVLLQESINL--HPTPNSYI-FLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHT-TCHHHHHHHHHHHHHH--CCCHHHHH-HHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH
T ss_pred HHhc-ccHHHHHHHHHHHHhc--CCCchHHH-HHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCH
Confidence 7777 7899999999998665 34544444 46666777 99999999999988776443 45899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 358 LEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 358 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
++|...|++..+.. .-+...+..+...+...|++++|.+.++...... ..+...+..+...|...|++++|.+.|++.
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999988753 2245678888899999999999999998887765 335678888999999999999999999998
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHcccccc----------ccHHHHHHHHhhhhhcC----CchhHHHHHHHhhcchhh
Q 010739 438 LDLG-----LYPEYMDRVAVLQGLRKRIQQS----------GNVEAYLNLCKRLSDTS----LIGPCLVYLYIKKYKLWI 498 (502)
Q Consensus 438 ~~~g-----~~p~~~t~~~ll~~~~~~~~~~----------~~~~~a~~~~~~m~~~~----~~~~~li~~y~~~g~~~~ 498 (502)
.+.. ..-....+...-..+.. . |+.++|...++...+.. .....+...|.+.|+.+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILAR----QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHH----HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHH----HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 7643 11111112222233333 4 88999999988875432 144567788888888776
Q ss_pred hh
Q 010739 499 IK 500 (502)
Q Consensus 499 ~~ 500 (502)
+.
T Consensus 481 A~ 482 (537)
T 3fp2_A 481 AI 482 (537)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.67 E-value=1.3e-12 Score=125.97 Aligned_cols=307 Identities=11% Similarity=-0.031 Sum_probs=227.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
.+..+-..+.+.|++ +.|++.|+...+....+...+..+...+. ..|++++|...|++..+.. +-+...|
T Consensus 5 ~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~~~~~~-~~~~~~~ 74 (359)
T 3ieg_A 5 KHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFL--------AMGKSKAALPDLTKVIALK-MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhC-CCcchHH
Confidence 466777788999999 89999999999887557788888888777 8999999999999988753 3367899
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCC---CC-ccccccCCC-----CchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAY---AE-GDGEGQQGG-----PTGYLAWKMMVEGKYVDAIKLVIHLRESGL 265 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~-~ty~~~~~~-----~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 265 (502)
..+...|.+.|++++|...|++..+.. | +. ..+.. -+. ........+...|++++|++.|++.... .
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~ 150 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQ-LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-C 150 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C
Confidence 999999999999999999999998664 3 11 11111 000 0000023444579999999999998876 2
Q ss_pred CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739 266 KPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH 344 (502)
Q Consensus 266 ~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (502)
+.+...+..+...+.+. |++++|...+++..+.. ..+...+. .+...|.. |++++|.+.|++.........+ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~-~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~ 225 (359)
T 3ieg_A 151 VWDAELRELRAECFIKE-GEPRKAISDLKAASKLK-SDNTEAFY-KISTLYYQLGDHELSLSEVRECLKLDQDHKR--CF 225 (359)
T ss_dssp TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC-SCCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred CCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCccchH--HH
Confidence 34567788888888888 78999999888886542 22334443 56677777 9999999999888876544433 33
Q ss_pred H------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 010739 345 E------------RLLAMYICAGRGLEAERQLWEMKLVGKEADGD-----LYDIVLAICASQNEGSAVSRLLSRIEVMNS 407 (502)
Q Consensus 345 ~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~li~~~~~~~~~~~a~~l~~~m~~~~~ 407 (502)
. .+...+.+.|++++|...+++..+.. |+.. .+..+-..+...|++++|.+.++......
T Consensus 226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 302 (359)
T 3ieg_A 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME- 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 2 22556788999999999999887653 3322 23345578888899999999998877654
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010739 408 LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE 445 (502)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 445 (502)
..+...+..+...|.+.|++++|.+.|++..+. .|+
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~ 338 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NEN 338 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 336778888888999999999999999988765 355
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=2.2e-15 Score=145.80 Aligned_cols=277 Identities=12% Similarity=0.030 Sum_probs=130.2
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
+.|++++|.++++++. +..+|..|..++.+.|++++|.+.|... +|..+|.. +...+...
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~--------V~~~ae~~ 74 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYME--------VVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHH--------HHHHHHhC
Confidence 7789999999999883 3358999999999999999999999652 56667777 78888889
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~ 326 (502)
|++++|+++++..++. .+++.+.+.++.+|.+. |+++++.++++ .|+..+++ .+...|.. |++++|..
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~-------~pn~~a~~-~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN-------GPNNAHIQ-QVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC-----------------CTTTHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc-------CCcHHHHH-HHHHHHHHcCCHHHHHH
Confidence 9999999977766653 56688899999999999 89999987774 36777887 68888888 99999999
Q ss_pred HHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 327 LSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 327 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
.|..+ ..|..+..++.+.|++++|.+.+.++ .++.||..++.+|...|+++.|......
T Consensus 144 ~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----- 202 (449)
T 1b89_A 144 LYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH----- 202 (449)
T ss_dssp HHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----
T ss_pred HHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----
Confidence 99864 28999999999999999999999988 3789999999999999999999543332
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh----h-----
Q 010739 407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL----S----- 477 (502)
Q Consensus 407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m----~----- 477 (502)
+..+..-...++..|.+.|++++|..+++..+... +-....|+-|--++++- +-+++.+.++.|..- +
T Consensus 203 L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky--~p~k~~ehl~~~~~~ini~k~~~~~ 279 (449)
T 1b89_A 203 IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAA 279 (449)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT--CHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 22344445569999999999999999999977554 55666777776666531 146677777766543 1
Q ss_pred hcCCchhHHHHHHHhhcchhhh
Q 010739 478 DTSLIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 478 ~~~~~~~~li~~y~~~g~~~~~ 499 (502)
+...+.+.++..|..-|.++.+
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHH
Confidence 3344777899999998887754
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.65 E-value=2.4e-13 Score=139.15 Aligned_cols=353 Identities=12% Similarity=0.016 Sum_probs=253.6
Q ss_pred HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739 86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK 164 (502)
Q Consensus 86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~ 164 (502)
+++|++.|++.. ..|. .+..|..+...+.+.|++ +.|++.|+...+....+...+..+...+.
T Consensus 41 ~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~----- 104 (537)
T 3fp2_A 41 FNEAIKYYQYAIELDPN----------EPVFYSNISACYISTGDL-EKVIEFTTKALEIKPDHSKALLRRASANE----- 104 (537)
T ss_dssp CC-CHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhhCCC----------CcHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHHH-----
Confidence 555666665544 2222 345588889999999999 89999999999887557788888888777
Q ss_pred hhhhhccHhhHHHHHHHHhhCCC------------------------------------CCCHH----------------
Q 010739 165 YIEEERGVGDVVDLLVDMDCVGL------------------------------------KPGFS---------------- 192 (502)
Q Consensus 165 ~~~~~~~~~~a~~~~~~m~~~g~------------------------------------~p~~~---------------- 192 (502)
..|++++|...|+.+....- .|+..
T Consensus 105 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 105 ---SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp ---HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred ---HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 89999999998864422110 11111
Q ss_pred --------------HHHHHHHHHHh--------cCcHHHHHHHHHHHHHcCCCCCCc--------cccccCCCCchHHHH
Q 010739 193 --------------MIEKVISLYWE--------MEKKERAVLFVKAVLSRGIAYAEG--------DGEGQQGGPTGYLAW 242 (502)
Q Consensus 193 --------------~y~~li~~~~~--------~g~~~~A~~l~~~m~~~~~~p~~~--------ty~~~~~~~~~~~~~ 242 (502)
....+...+.. .|++++|..+|+++.+.. |+.. .|.. +..
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~--------~g~ 251 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY--------TGI 251 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH--------HHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH--------HHH
Confidence 11222222211 247889999999887654 3311 1111 233
Q ss_pred HHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739 243 KMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL 321 (502)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~ 321 (502)
.+...|++++|.+.|++.... .|+..+|..+...+.+. +++++|.+.+++..+..- .+...+. .+...|.. |++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~ 326 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK-ENSQEFFKFFQKAVDLNP-EYPPTYY-HRGQMYFILQDY 326 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS-SCCHHHHHHHHHHHHHCT-TCHHHHH-HHHHHHHHTTCH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh-cCHHHHHHHHHHHhccCC-CCHHHHH-HHHHHHHhcCCH
Confidence 444579999999999999876 56678888888888888 899999999999865432 2344444 57777888 999
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR 401 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~ 401 (502)
++|.+.|++......... ..|..+...|.+.|++++|...+++..+.. ..+...+..+...+...|++++|.+.++.
T Consensus 327 ~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENV--YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHCTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999888765444 489999999999999999999999998763 33466888888999999999999999987
Q ss_pred HHHcCC-----CCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccH
Q 010739 402 IEVMNS-----LCKKKTLSWLLRGYIKG----------GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNV 466 (502)
Q Consensus 402 m~~~~~-----~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~ 466 (502)
...... ......+......|.+. |++++|...|++..+.. +.+...+..+-..+.. .|+.
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~----~g~~ 478 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQ----MEKI 478 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----hccH
Confidence 755431 11222234455667777 99999999999998754 2356677778888877 7999
Q ss_pred HHHHHHHhhhhhcC
Q 010739 467 EAYLNLCKRLSDTS 480 (502)
Q Consensus 467 ~~a~~~~~~m~~~~ 480 (502)
++|...++...+..
T Consensus 479 ~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 479 DEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999886543
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.62 E-value=4.1e-12 Score=122.41 Aligned_cols=299 Identities=8% Similarity=-0.013 Sum_probs=227.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-
Q 010739 148 NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE- 226 (502)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~- 226 (502)
+..+..+...+. ..|++++|...|++..+.. +.+..+|..+...|.+.|++++|...|++..+.. |+.
T Consensus 3 ~~~~~~~~~~~~--------~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 71 (359)
T 3ieg_A 3 VEKHLELGKKLL--------AAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFT 71 (359)
T ss_dssp HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcc
Confidence 345555556566 8999999999999998753 3468899999999999999999999999998764 322
Q ss_pred ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCC----CHhHHHHH------------HHHHHhccccHHHHH
Q 010739 227 GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKP----EVYSYLIA------------LTAVVKELNEFGKAL 290 (502)
Q Consensus 227 ~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~ty~~l------------i~~~~~~~~~~~~a~ 290 (502)
..|.. +...+...|++++|.+.|++.... .| +...+..+ ...+... |++++|.
T Consensus 72 ~~~~~--------l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~ 140 (359)
T 3ieg_A 72 AARLQ--------RGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAI 140 (359)
T ss_dssp HHHHH--------HHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hHHHH--------HHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHH
Confidence 22222 556666689999999999998865 55 33344433 4677777 8999999
Q ss_pred HHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 291 RKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 291 ~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+.+++..+..- .+...+. .+...|.. |++++|.+.+++....... +...|..+...|...|++++|...|++..+
T Consensus 141 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 141 TFLDKILEVCV-WDAELRE-LRAECFIKEGEPRKAISDLKAASKLKSD--NTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHCT-TCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHTTCSC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CchHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999855422 2333443 56777888 9999999999998876533 445899999999999999999999999886
Q ss_pred CCCCCCH-HHHH------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHH
Q 010739 370 VGKEADG-DLYD------------IVLAICASQNEGSAVSRLLSRIEVMNSLCKK----KTLSWLLRGYIKGGHINDAAE 432 (502)
Q Consensus 370 ~g~~p~~-~t~~------------~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~ 432 (502)
. .|+. ..+. .+...+...|++++|.+.++........ +. ..+..+...|.+.|++++|.+
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4 3332 2222 2245688999999999999888776522 22 224457788999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739 433 TLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 433 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~ 480 (502)
.|++..+.. +.+..++..+-..+.. .|+.++|...++...+..
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLI----EEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 999998753 2367778888888777 799999999999886644
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.61 E-value=2.5e-12 Score=122.48 Aligned_cols=270 Identities=10% Similarity=-0.099 Sum_probs=187.0
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739 187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL 265 (502)
Q Consensus 187 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 265 (502)
.+.+...+..+...+...|++++|.++|+++.+.. |+. ..+.. ....+...|++++|..+++++... -
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~--------~~~~~~~~~~~~~A~~~~~~~~~~-~ 86 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPV--------HIGTLVELNKANELFYLSHKLVDL-Y 86 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHH--------HHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHH--------HHHHHHHhhhHHHHHHHHHHHHHh-C
Confidence 33455567777788888888888888888887654 221 11111 445555678888888888888765 2
Q ss_pred CCCHhHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHh
Q 010739 266 KPEVYSYLIALTAVVKELN-EFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGV 342 (502)
Q Consensus 266 ~p~~~ty~~li~~~~~~~~-~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~ 342 (502)
+-+...|..+...+... + ++++|.+.+++..+.. |+ ...+. .+...|.. |++++|.+.|++..........
T Consensus 87 ~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~--~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-- 160 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMV-GHKNEHARRYLSKATTLE--KTYGPAWI-AYGHSFAVESEHDQAMAAYFTAAQLMKGCHL-- 160 (330)
T ss_dssp TTSTHHHHHHHHHHHHS-CSCHHHHHHHHHHHHTTC--TTCTHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH--
T ss_pred cCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHhC--CccHHHHH-HHHHHHHHccCHHHHHHHHHHHHHhccccHH--
Confidence 23456677777777777 6 7888888888775442 32 33333 46666777 8888888888887776544433
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--------CCCHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS--------LCKKKTL 414 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~--------~p~~~~~ 414 (502)
.+..+...|...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++....... ..+...+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 66667888888888888888888877542 23456777777888888888888888876654321 2235677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 415 SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 415 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
..+...|.+.|++++|.+.|++..+.. ..+...+..+-..+.. .|+.++|...+++..+.
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSL----MGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH----HTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH----hccHHHHHHHHHHHHcc
Confidence 778888888888888888888877654 2245566666666665 68888888888877554
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.6e-12 Score=123.92 Aligned_cols=279 Identities=10% Similarity=-0.047 Sum_probs=155.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+..+...+...|++ +.|+++|+.+.+....+...+..+...+. ..|++++|..+++++.+.. +.+...|.
T Consensus 25 ~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 25 VVSLAERHYYNCDF-KMCYKLTSVVMEKDPFHASCLPVHIGTLV--------ELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTTTHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCChhhHHHHHHHHH--------HhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 55555566666666 67777777766655334445555555454 6667777777776666542 22455666
Q ss_pred HHHHHHHhcC-cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHH
Q 010739 196 KVISLYWEME-KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLI 274 (502)
Q Consensus 196 ~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 274 (502)
.+...|...| ++++|.+.|++..+.. |+ +...|..
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~------------------------------------------~~~~~~~ 130 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE--KT------------------------------------------YGPAWIA 130 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC--TT------------------------------------------CTHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC--Cc------------------------------------------cHHHHHH
Confidence 6666666666 6666666666665433 21 1223334
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739 275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC 353 (502)
Q Consensus 275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 353 (502)
+...+... |++++|.+.+++..+..-. +...+. .+...|.. |++++|.+.|++....... +...|..+...|.+
T Consensus 131 l~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~-~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 131 YGHSFAVE-SEHDQAMAAYFTAAQLMKG-CHLPML-YIGLEYGLTNNSKLAERFFSQALSIAPE--DPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHTTT-CSHHHH-HHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cCHHHHHHHHHHHHHhccc-cHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH
Confidence 44444444 4444444444444322111 111121 23333444 5555555555554443322 23466666666666
Q ss_pred cCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 354 AGRGLEAERQLWEMKLVG--------KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
.|++++|...+++..+.. ...+..++..+...+...|++++|.+.++...... ..+...+..+...|.+.|
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMG 284 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhc
Confidence 777777776666665431 12234566666677777777777777776665544 225566677777777777
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010739 426 HINDAAETLTKMLDLGLYP-EYMDRVAVLQGL 456 (502)
Q Consensus 426 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~ 456 (502)
++++|.+.|++..+. .| +...+..+..++
T Consensus 285 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 285 NFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 888887777776543 34 444555555555
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.59 E-value=2.3e-13 Score=132.20 Aligned_cols=251 Identities=12% Similarity=-0.032 Sum_probs=115.7
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
..|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+.+ +.+...+.. +...+...
T Consensus 76 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~--------l~~~~~~~ 145 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMA--------LAVSFTNE 145 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH--------HHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHH--------HHHHHHHc
Confidence 5666666666666666542 2355566666666666666666666666665543 111112222 33334445
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHh-HHHH---------------HHHHHHhccccHHHHHHHHHHHHHcCCC-CchhchHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVY-SYLI---------------ALTAVVKELNEFGKALRKLKGYVRAGSI-AELDGKNL 310 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~-ty~~---------------li~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ 310 (502)
|++++|++.|+++.... |+.. .+.. .+..+.+. |++++|...+++..+..-. ++..++.
T Consensus 146 g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~- 221 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQC- 221 (368)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH-HHHHHHHHHHHHHHHHSTTSCCHHHHH-
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc-ccHHHHHHHHHHHHHhCcCcccHHHHH-
Confidence 66666666666555432 2111 1100 12222233 4555555555555322111 1222332
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
.+...|.. |++++|.+.|+++...... +..+|..+...|.+.|++++|...|++..+.. ..+...+..+...+...
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPN--DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 24444444 5555555555544443221 22345555555555555555555555544321 11234444444555555
Q ss_pred CChhHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739 390 NEGSAVSRLLSRIEVMNSLC----------KKKTLSWLLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~l~~ 435 (502)
|++++|.+.++......... ...+|..+..+|.+.|+.++|..+++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 55555555554433321100 13444445555555555555554443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.58 E-value=5.4e-13 Score=129.49 Aligned_cols=288 Identities=14% Similarity=-0.014 Sum_probs=214.1
Q ss_pred hhccHhhHHH-HHHHHhhCCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHH
Q 010739 168 EERGVGDVVD-LLVDMDCVGL---KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAW 242 (502)
Q Consensus 168 ~~~~~~~a~~-~~~~m~~~g~---~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~ 242 (502)
-.+++++|.. .+++..+..- ..+...+..+...|.+.|++++|...|+++.+.. |+ ...+.. +..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~--------l~~ 106 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQY--------LGT 106 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHH--------HHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHH
Confidence 3467777877 7765443211 1134568889999999999999999999998765 33 223333 556
Q ss_pred HHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHH-----------
Q 010739 243 KMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLG----------- 311 (502)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~----------- 311 (502)
.+...|++++|++.|++..... +.+..++..+...+... |++++|.+.+++..+..-........ .
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 183 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTP-AEEGAGGAGLGP 183 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHH-HHHHhhhhcccH
Confidence 6667899999999999998763 34678899999999999 89999999999996654222111110 1
Q ss_pred ---HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739 312 ---LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICA 387 (502)
Q Consensus 312 ---li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 387 (502)
.+..+.. |++++|...|+++........+..+|..+...|.+.|++++|...|++..+.. ..+...|..+...+.
T Consensus 184 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLA 262 (368)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 1333336 99999999999998876553355699999999999999999999999988752 235678888999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC---C-------CHHHHHHHHHHHH
Q 010739 388 SQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY---P-------EYMDRVAVLQGLR 457 (502)
Q Consensus 388 ~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p-------~~~t~~~ll~~~~ 457 (502)
..|++++|.+.++...... ..+...+..+...|.+.|++++|.+.|++..+..-. | ...+|..+..++.
T Consensus 263 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999887764 346788888999999999999999999998764211 1 2578888888887
Q ss_pred ccccccccHHHHHHHHh
Q 010739 458 KRIQQSGNVEAYLNLCK 474 (502)
Q Consensus 458 ~~~~~~~~~~~a~~~~~ 474 (502)
. .|+.++|..+++
T Consensus 342 ~----~g~~~~A~~~~~ 354 (368)
T 1fch_A 342 M----LGQSDAYGAADA 354 (368)
T ss_dssp H----HTCGGGHHHHHT
T ss_pred H----hCChHhHHHhHH
Confidence 6 788888888765
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.55 E-value=1.9e-12 Score=121.69 Aligned_cols=251 Identities=12% Similarity=0.063 Sum_probs=160.9
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCh--HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010739 123 FSQEGRDSWCALEVFEWLKKENRVDN--ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL 200 (502)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 200 (502)
.-..|++ ..|++.++...... |+. ...-.+.+++. ..|+++.|...++. .-+|+..++..+...
T Consensus 9 ~~~~g~y-~~ai~~~~~~~~~~-p~~~~e~~~~l~r~yi--------~~g~~~~al~~~~~----~~~~~~~a~~~la~~ 74 (291)
T 3mkr_A 9 AFYIGSY-QQCINEAQRVKPSS-PERDVERDVFLYRAYL--------AQRKYGVVLDEIKP----SSAPELQAVRMFAEY 74 (291)
T ss_dssp HHHTTCH-HHHHHHHHHSCCCS-HHHHHHHHHHHHHHHH--------HTTCHHHHHHHSCT----TSCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHhcccCC-chhhHHHHHHHHHHHH--------HCCCHHHHHHHhcc----cCChhHHHHHHHHHH
Confidence 3445677 67777665543322 322 23344455566 67888888875543 245677788888888
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739 201 YWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV 280 (502)
Q Consensus 201 ~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 280 (502)
|.+.|+.++|.+.++++...+..|+..++.. .+...+...|++++|++.+++ ..+...+..+...+.
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~-------~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLL-------MAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILL 141 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHH-------HHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHH-------HHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 8888888888888888887776666443322 133444556888888888876 456677778888888
Q ss_pred hccccHHHHHHHHHHHHHcCCCCchhchHH--HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCCh
Q 010739 281 KELNEFGKALRKLKGYVRAGSIAELDGKNL--GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRG 357 (502)
Q Consensus 281 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (502)
+. |+.++|.+.++++.+.. |+....+. +.+..+.. |++++|..+|+++..... .+...|+.+..++.+.|++
T Consensus 142 ~~-g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 142 KL-DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HT-TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHTTCH
T ss_pred HC-CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCH
Confidence 88 78888888888885553 54432221 23344444 777777777777776632 2445777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcC
Q 010739 358 LEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSA-VSRLLSRIEVMN 406 (502)
Q Consensus 358 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~l~~~m~~~~ 406 (502)
++|...|++..+.. +-+..++..+...+...|+.++ +.++++.+....
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 77777777766532 1245566666666666676654 456666555443
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.54 E-value=5.2e-12 Score=120.10 Aligned_cols=261 Identities=10% Similarity=-0.067 Sum_probs=163.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+-.....+.+.|++ ++|.++|+.+.+....+...+..+...+. ..|++++|...+++..+.. +.+..++.
T Consensus 24 ~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 93 (327)
T 3cv0_A 24 PMEEGLSMLKLANL-AEAALAFEAVCQAAPEREEAWRSLGLTQA--------ENEKDGLAIIALNHARMLD-PKDIAVHA 93 (327)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcC-cCCHHHHH
Confidence 66667788889999 89999999999887557778888877777 8999999999999998863 34788999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHH--------------H--HHHHhCcHHHHHHHHHH
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLA--------------W--KMMVEGKYVDAIKLVIH 259 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~--------------~--~~~~~g~~~~a~~~~~~ 259 (502)
.+...|.+.|++++|.+.+++..+.. |+...... .. - .+...|++++|.+.+++
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGS--------VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------------------CCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHH--------HHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999998764 33221111 11 0 12223555555555555
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCc
Q 010739 260 LRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSL 339 (502)
Q Consensus 260 m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~ 339 (502)
..... +.+..++..+...+.+. |++++|.+.+++. ......
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~-----------------------------------~~~~~~-- 204 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLS-NNYDSAAANLRRA-----------------------------------VELRPD-- 204 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH-----------------------------------HHHCTT--
T ss_pred HHhhC-CCCHHHHHHHHHHHHHh-ccHHHHHHHHHHH-----------------------------------HHhCCC--
Confidence 54431 11344444444445444 4455555544444 433221
Q ss_pred hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----------
Q 010739 340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC---------- 409 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p---------- 409 (502)
+...|..+...|.+.|++++|...|++..+.. ..+...+..+...+...|++++|.+.++.........
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 283 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence 22355555555556666666666666555432 1234455555556666666666666665554433111
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 410 -KKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 410 -~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
+...|..+...|.+.|+.++|..++++
T Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 284 ATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345666667777777777777766654
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.54 E-value=1.9e-13 Score=132.26 Aligned_cols=200 Identities=11% Similarity=-0.054 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
.|..+..++.+.|++ ++|.+.|.+. +|..+|..+++++. ..|++++|..+++..++. .++..+.
T Consensus 34 vWs~La~A~l~~g~~-~eAIdsfika-----~D~~~y~~V~~~ae--------~~g~~EeAi~yl~~ark~--~~~~~i~ 97 (449)
T 1b89_A 34 VWSQLAKAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAAN--------TSGNWEELVKYLQMARKK--ARESYVE 97 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHcC-----CCHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHh--CccchhH
Confidence 355555555555555 4555555332 34445555555444 455555555544433332 2334455
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHH
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLI 274 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 274 (502)
+.++.+|.|.|+++++.++++ .|+..+|+. +...+...|++++|..+|..+ ..|..
T Consensus 98 ~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~--------IGd~~~~~g~yeeA~~~Y~~a---------~n~~~ 153 (449)
T 1b89_A 98 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQ--------VGDRCYDEKMYDAAKLLYNNV---------SNFGR 153 (449)
T ss_dssp -----------CHHHHTTTTT-------CC------------------------CTTTHHHHHHHT---------TCHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHH--------HHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence 555555555555555555543 144444444 444444455555555555543 24555
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739 275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC 353 (502)
Q Consensus 275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 353 (502)
+..++++. |++++|.+.+... .++.+|. .++.+|.. |+++.|......+ ...++ -...++..|.+
T Consensus 154 LA~~L~~L-g~yq~AVea~~KA------~~~~~Wk-~v~~aCv~~~ef~lA~~~~l~L----~~~ad--~l~~lv~~Yek 219 (449)
T 1b89_A 154 LASTLVHL-GEYQAAVDGARKA------NSTRTWK-EVCFACVDGKEFRLAQMCGLHI----VVHAD--ELEELINYYQD 219 (449)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHH------TCHHHHH-HHHHHHHHTTCHHHHHHTTTTT----TTCHH--HHHHHHHHHHH
T ss_pred HHHHHHHh-ccHHHHHHHHHHc------CCchhHH-HHHHHHHHcCcHHHHHHHHHHH----HhCHh--hHHHHHHHHHH
Confidence 55555555 4555555444443 1344444 34555555 5555554322110 01111 22234455555
Q ss_pred cCChHHHHHHHHHHH
Q 010739 354 AGRGLEAERQLWEMK 368 (502)
Q Consensus 354 ~g~~~~A~~l~~~m~ 368 (502)
.|++++|..+++.-.
T Consensus 220 ~G~~eEai~lLe~aL 234 (449)
T 1b89_A 220 RGYFEELITMLEAAL 234 (449)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 555555555555444
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.54 E-value=9.5e-13 Score=123.74 Aligned_cols=272 Identities=10% Similarity=-0.019 Sum_probs=177.4
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010739 200 LYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAV 279 (502)
Q Consensus 200 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~ 279 (502)
-..-.|++..|.+.++..... .|+...= ...++...++..|++++|+..++. .-.|+..++..+...+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e------~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVE------RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHH------HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHH------HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHH
Confidence 344566777777666554221 1221000 000134455566888888876544 2355667777777777
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChH
Q 010739 280 VKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGL 358 (502)
Q Consensus 280 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (502)
.+. ++.++|++.++++...+..|+...+...+-..|.. |++++|.+.+++ +.+...+..+...|.+.|+++
T Consensus 76 ~~~-~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 76 ASH-SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HCS-TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHH
T ss_pred cCC-CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHH
Confidence 777 67888888888887777667665554344455777 888888888755 335567888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739 359 EAERQLWEMKLVGKEADGDLYD---IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 359 ~A~~l~~~m~~~g~~p~~~t~~---~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 435 (502)
+|...|+++.+.. |+...++ ..+..+...|++++|..+++.+.... ..+...++.+..+|.+.|++++|.+.|+
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888887653 5543221 22233444578888888888877663 4577778888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccccccccHH-HHHHHHhhhhhcCCchhHHHHHHHhhcchhhh
Q 010739 436 KMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVE-AYLNLCKRLSDTSLIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 436 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~ 499 (502)
+..+.. +-+..++..+...+.. .|+.+ .+.++++++.+...-.+.+.+.+.+.+.++.+
T Consensus 225 ~al~~~-p~~~~~l~~l~~~~~~----~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 225 EALDKD-SGHPETLINLVVLSQH----LGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRL 284 (291)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 877643 2255566666666654 45544 45677777765543566677777777776654
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.54 E-value=1.5e-12 Score=126.55 Aligned_cols=262 Identities=9% Similarity=-0.126 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA- 225 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~- 225 (502)
+...+..+...+. +.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+.. |+
T Consensus 64 ~~~~~~~~~~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~ 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRL--------KEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNN 132 (365)
T ss_dssp TCTTHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred chhHHHHHHHHHH--------HCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC
Confidence 3344666666566 7888999999998887753 3467788888888888888888888888887654 22
Q ss_pred CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-----------hHHHHHHHHHHhccccHHHHHHHHH
Q 010739 226 EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-----------YSYLIALTAVVKELNEFGKALRKLK 294 (502)
Q Consensus 226 ~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----------~ty~~li~~~~~~~~~~~~a~~~~~ 294 (502)
...+.. +...+...|++++|++.|+++... .|+. ..+..+...+.+. |++++|.+.++
T Consensus 133 ~~~~~~--------l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 201 (365)
T 4eqf_A 133 LKALMA--------LAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDS-SVLEGVKELYL 201 (365)
T ss_dssp HHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CC-HHHHHHHHHHH
T ss_pred HHHHHH--------HHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence 222222 444455567777777777777653 2221 1122234455555 55666666666
Q ss_pred HHHHcCCC-CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010739 295 GYVRAGSI-AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK 372 (502)
Q Consensus 295 ~m~~~g~~-p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 372 (502)
+..+..-. ++...+. .+...|.. |++++|.+.|++....... +..+|+.+...|.+.|++++|...|++..+.
T Consensus 202 ~al~~~p~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 276 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQT-GLGVLFHLSGEFNRAIDAFNAALTVRPE--DYSLWNRLGATLANGDRSEEAVEAYTRALEI-- 276 (365)
T ss_dssp HHHHHSCSSCCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHhCcCccCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 55333211 1233333 34444555 5666666555555544322 2235555555555555555555555555543
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739 373 EA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL-----------CKKKTLSWLLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 373 ~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~l~~ 435 (502)
.| +..++..+...+...|++++|.+.++........ .+...|..+-.++...|+.+.|.++.+
T Consensus 277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 22 2444555555555555555555555444332200 023444455555555555555544433
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=3.7e-12 Score=123.69 Aligned_cols=269 Identities=10% Similarity=-0.025 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
.+..+-..+.+.|++ +.|.+.|+.+.+....+...|..+...+. ..|++++|...|++..+.. +.+..+|
T Consensus 67 ~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDL-PVTILFMEAAILQDPGDAEAWQFLGITQA--------ENENEQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp THHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 377888899999999 89999999999887557889999988888 8999999999999998863 3468899
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCcc-cccc--CCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC-CCHh
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGD-GEGQ--QGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK-PEVY 270 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-y~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~ 270 (502)
..+...|.+.|++++|.+.|+++.+.. |+... +... .......+...+...|++++|+++|+++....-. ++..
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 999999999999999999999998754 22111 1000 0000001244555679999999999999887322 2678
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHH
Q 010739 271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLA 349 (502)
Q Consensus 271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 349 (502)
++..+...+.+. |++++|.+.+++..+.. ..+...+. .+...|.+ |++++|.+.|++....... +..+|..+..
T Consensus 215 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 289 (365)
T 4eqf_A 215 LQTGLGVLFHLS-GEFNRAIDAFNAALTVR-PEDYSLWN-RLGATLANGDRSEEAVEAYTRALEIQPG--FIRSRYNLGI 289 (365)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHH
Confidence 999999999999 89999999999986542 22345554 57888888 9999999999998887533 3569999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCC---CC--------CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010739 350 MYICAGRGLEAERQLWEMKLVG---KE--------ADGDLYDIVLAICASQNEGSAVSRLLS 400 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g---~~--------p~~~t~~~li~~~~~~~~~~~a~~l~~ 400 (502)
.|.+.|++++|...|++..+.. .. .+...|..+-.++...|+.+.+.++.+
T Consensus 290 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999987642 11 136778888899999999998877664
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.52 E-value=3e-12 Score=121.79 Aligned_cols=254 Identities=11% Similarity=-0.008 Sum_probs=175.4
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~ 247 (502)
..|++++|..+|+++.+.. +.+...+..+...|.+.|++++|.+.|++..+.. |
T Consensus 33 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~----------------------- 86 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--P----------------------- 86 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------------
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--c-----------------------
Confidence 5666666666666665542 2255566666666666666666666666665442 1
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHH-------------H-H
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLG-------------L-I 313 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~-------------l-i 313 (502)
.+..++..+...+.+. |++++|.+.+++..+.. |+....... + .
T Consensus 87 -------------------~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 87 -------------------KDIAVHAALAVSHTNE-HNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp -------------------TCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred -------------------CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHH
Confidence 1233444444444444 45555555554443321 111111101 1 1
Q ss_pred H-HHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010739 314 E-KYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNE 391 (502)
Q Consensus 314 ~-~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~ 391 (502)
. .+.. |++++|.+.++++...... +...+..+...|.+.|++++|...+++..+.. ..+..++..+...+...|+
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMNPN--DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC
Confidence 1 2566 8999999999888776543 34589999999999999999999999988753 2356788888899999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccc
Q 010739 392 GSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP-----------EYMDRVAVLQGLRKRI 460 (502)
Q Consensus 392 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~ 460 (502)
+++|.+.++...... ..+...+..+...|.+.|++++|.+.|++..+..-.. +...+..+...+..
T Consensus 222 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 298 (327)
T 3cv0_A 222 PQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV-- 298 (327)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh--
Confidence 999999999887765 3367788889999999999999999999988654221 46778888888877
Q ss_pred cccccHHHHHHHHhhhh
Q 010739 461 QQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 461 ~~~~~~~~a~~~~~~m~ 477 (502)
.|+.++|...++...
T Consensus 299 --~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 299 --MNRPDLVELTYAQNV 313 (327)
T ss_dssp --TTCHHHHHHHTTCCS
T ss_pred --cCCHHHHHHHHHHHH
Confidence 799999999987764
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=9.3e-11 Score=107.24 Aligned_cols=225 Identities=11% Similarity=-0.050 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcC--CCCC
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESG--LKPE 268 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g--~~p~ 268 (502)
...|..+-..+.+.|++++|...|++..+.. .+...|.. +...+...|++++|++.|++..... ..|+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~--------~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 74 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNN--------RAAAEYEKGEYETAISTLNDAVEQGREMRAD 74 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHH--------HHHHHHHcccHHHHHHHHHHHHHhCcccccc
Confidence 4567788888888999999999998888776 55545544 6666677899999999888877642 2223
Q ss_pred ----HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhH
Q 010739 269 ----VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVV 343 (502)
Q Consensus 269 ----~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~ 343 (502)
..+|..+...+.+. +++++|...+++..+.. |+. ..+.+ |++++|.+.++++.... +.+...
T Consensus 75 ~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~--~~~--------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 141 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKL-GDLKKTIEYYQKSLTEH--RTA--------DILTKLRNAEKELKKAEAEAYVN--PEKAEE 141 (258)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC--CCH--------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcC--chh--------HHHHHHhHHHHHHHHHHHHHHcC--cchHHH
Confidence 47788888899999 89999999999886543 332 23555 88999999998877753 334568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739 344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK 423 (502)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 423 (502)
|..+...+...|++++|...|++..+.. ..+...|..+...+...|++++|.+.++...... ..+...|..+...|.+
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence 8889999999999999999999988753 2357788888899999999999999998887765 3357788889999999
Q ss_pred CCCHHHHHHHHHHHHHC
Q 010739 424 GGHINDAAETLTKMLDL 440 (502)
Q Consensus 424 ~g~~~~A~~l~~~m~~~ 440 (502)
.|++++|.+.|++..+.
T Consensus 220 ~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 220 VKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 99999999999987754
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.39 E-value=6.6e-09 Score=105.10 Aligned_cols=321 Identities=10% Similarity=-0.036 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhh----hccHhhHHHHHHHHhhC
Q 010739 114 RELQLVLVYFSQ----EGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEE----ERGVGDVVDLLVDMDCV 185 (502)
Q Consensus 114 ~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~----~~~~~~a~~~~~~m~~~ 185 (502)
..+..+-..|.. .++. ++|.++|+...+.| ++..+..+-..+. . .++.++|..+|++..+.
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~--~~~a~~~Lg~~y~--------~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDY-AQAVIWYKKAALKG--LPQAQQNLGVMYH--------EGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHH--------HTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHH--------cCCCCCCCHHHHHHHHHHHHHC
Confidence 335555555666 6666 67777777776665 4444444444333 3 56777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHH
Q 010739 186 GLKPGFSMIEKVISLYWE----MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLV 257 (502)
Q Consensus 186 g~~p~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~ 257 (502)
| +...+..|-..|.. .++.++|.+.|++..+.| +...+.. +...+.. .++.++|++.|
T Consensus 145 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~--------Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 145 G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ--------LGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH--------HHHHHHHTSSSCCCHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH--------HHHHHhcCCCCCcCHHHHHHHH
Confidence 4 45566666666666 667777777777776654 1111111 2222222 46777777777
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHh----ccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh-----cCcHHhHHHHH
Q 010739 258 IHLRESGLKPEVYSYLIALTAVVK----ELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ-----SDLLADGSRLS 328 (502)
Q Consensus 258 ~~m~~~g~~p~~~ty~~li~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~-----~g~~~~a~~~~ 328 (502)
++-.+.| +...+..+-..+.. . ++.++|.++++...+.|.. + ..+ .+-..|. .++.++|.+.|
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~~~-~-a~~--~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVT-QDYTQSRVLFSQSAEQGNS-I-AQF--RLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHTTTCH-H-HHH--HHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCCCH-H-HHH--HHHHHHHCCCCCCCCHHHHHHHH
Confidence 7766653 44555555555554 3 5677777777776555421 1 111 1222222 26777777777
Q ss_pred HHHHHcCCCCchHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHH
Q 010739 329 SWAIQEGGSSLYGVVHERLLAMYICA-----GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN---EGSAVSRLLS 400 (502)
Q Consensus 329 ~~m~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~---~~~~a~~l~~ 400 (502)
++..+.+. ...+..+-..|... ++.++|...|++..+.| +...+..+-..+...| +.++|.+.++
T Consensus 283 ~~a~~~~~----~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 283 RKSAEQGN----SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHTTTC----HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHcCC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 77665532 22555666666665 77777777777777654 3344555555555544 5667777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 401 RIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 401 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
...+.+ +...+..|-..|.. .++.++|.+.|++..+.| +...+..|-..+..-....++.++|...++..
T Consensus 356 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 356 KAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 666553 55666666666776 677778888887777765 23344444444432111246777777777777
Q ss_pred hhcC
Q 010739 477 SDTS 480 (502)
Q Consensus 477 ~~~~ 480 (502)
.+.+
T Consensus 430 ~~~~ 433 (490)
T 2xm6_A 430 STND 433 (490)
T ss_dssp HHHH
T ss_pred HHCC
Confidence 6654
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.39 E-value=8.2e-09 Score=104.41 Aligned_cols=289 Identities=11% Similarity=0.018 Sum_probs=184.2
Q ss_pred HHHHHHHHHH----cCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCH
Q 010739 116 LQLVLVYFSQ----EGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGF 191 (502)
Q Consensus 116 ~~~ll~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 191 (502)
+..+-..|.. .++. ++|.++|+...+.+ +...+..+-..+.. ..+..++.++|..+|++..+.| +.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~----g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDK-AESVKWFRLAAEQG--RDSGQQSMGDAYFE----GDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp HHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHH----TSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHHc----CCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 4444455555 5677 68888888777766 44555555443430 0001567888888888777764 56
Q ss_pred HHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHc
Q 010739 192 SMIEKVISLYWE----MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRES 263 (502)
Q Consensus 192 ~~y~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~ 263 (502)
..+..|-..|.+ .++.++|.+.|++..+.|-. ..+.. +...+.. .+++++|.++|++..+.
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~--------lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDE---LGQLH--------LADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHH--------HHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCH---HHHHH--------HHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 677777777777 78888888888877766511 11111 2222222 46788888888877665
Q ss_pred CCCCCHhHHHHHHHHHHh----ccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc------CcHHhHHHHHHHHHH
Q 010739 264 GLKPEVYSYLIALTAVVK----ELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS------DLLADGSRLSSWAIQ 333 (502)
Q Consensus 264 g~~p~~~ty~~li~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~------g~~~~a~~~~~~m~~ 333 (502)
| +...+..+-..+.. . ++.++|++.++...+.|. ...+. .+-..|.. ++.++|.+.|++..+
T Consensus 253 ~---~~~a~~~lg~~y~~g~~~~-~d~~~A~~~~~~a~~~~~---~~a~~-~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 253 G---NSIAQFRLGYILEQGLAGA-KEPLKALEWYRKSAEQGN---SDGQY-YLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp T---CHHHHHHHHHHHHHTTTSS-CCHHHHHHHHHHHHTTTC---HHHHH-HHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHcCC---HHHHH-HHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 3 34444555555555 4 678888888877765542 12221 23344433 478888888887776
Q ss_pred cCCCCchHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 010739 334 EGGSSLYGVVHERLLAMYICAG---RGLEAERQLWEMKLVGKEADGDLYDIVLAICAS----QNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~l~~~m~~~~ 406 (502)
.+.+ ..+..+-..|.+.| +.++|...|++..+.| +...+..+-..+.. .++.++|.+.++.....+
T Consensus 325 ~~~~----~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 325 QGDA----TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TTCH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cCCH----HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 6432 36666666666655 6778888888877764 45566666666666 678888888887776655
Q ss_pred CCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 010739 407 SLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLGLY 443 (502)
Q Consensus 407 ~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 443 (502)
+...+..|-..|.+ .++.++|.+.|++..+.|..
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 45666667777776 78888888888887776644
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=4.1e-09 Score=107.80 Aligned_cols=116 Identities=10% Similarity=0.004 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhh
Q 010739 85 EFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVK 163 (502)
Q Consensus 85 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~ 163 (502)
.+++|..+|+++. ..|. ++..|...+..+.+.|+. +.|.++|+...... |+...|...+.....
T Consensus 27 ~~~~a~~~~e~al~~~P~----------~~~~w~~~~~~~~~~~~~-~~a~~~~~ral~~~-p~~~lw~~~~~~~~~--- 91 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPS----------SGRFWKLYIEAEIKAKNY-DKVEKLFQRCLMKV-LHIDLWKCYLSYVRE--- 91 (530)
T ss_dssp CHHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHHHTTCH-HHHHHHHHHHTTTC-CCHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC-CChHHHHHHHHHHHH---
Confidence 3778888888876 4454 344588999999999999 89999999998776 677777766653321
Q ss_pred hhhhhhccHhhHHH----HHHHHhh-CCCCC-CHHHHHHHHHHHHh---------cCcHHHHHHHHHHHHH
Q 010739 164 KYIEEERGVGDVVD----LLVDMDC-VGLKP-GFSMIEKVISLYWE---------MEKKERAVLFVKAVLS 219 (502)
Q Consensus 164 ~~~~~~~~~~~a~~----~~~~m~~-~g~~p-~~~~y~~li~~~~~---------~g~~~~A~~l~~~m~~ 219 (502)
..|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|.++|++..+
T Consensus 92 ----~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 92 ----TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp ----HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred ----HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 3455555554 6665543 35443 45677777776654 6888888888888776
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.32 E-value=5.9e-09 Score=112.74 Aligned_cols=343 Identities=12% Similarity=0.048 Sum_probs=237.7
Q ss_pred HHHHHHHHHhhcCChH------HHHHH-----Hhccc----------ChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 010739 86 FFEAIEELERMTREPS------DILEE-----MNDRL----------SARELQLVLVYFSQEGRDSWCALEVFEWLKKEN 144 (502)
Q Consensus 86 ~~~a~~~~~~~~~~~~------~~~~~-----~~~~~----------~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 144 (502)
..+|++++++...+|+ .+-.. +.... ..-....+-..+...|.+ ++|.++|++..
T Consensus 1001 p~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly-EEAf~IYkKa~--- 1076 (1630)
T 1xi4_A 1001 PNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF-EEAFAIFRKFD--- 1076 (1630)
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH-HHHHHHHHHcC---
Confidence 7889999999885555 11111 11111 111133345667778888 79999998862
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 010739 145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAY 224 (502)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 224 (502)
......+.++. ..+++++|.++.++.. +..+|..+-.++.+.|++++|.+-|..- -
T Consensus 1077 -~~~~A~~VLie-----------~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1077 -VNTSAVQVLIE-----------HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred -CHHHHHHHHHH-----------HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 22233455554 5678999999887542 3668889999999999999999998553 2
Q ss_pred CCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc
Q 010739 225 AEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE 304 (502)
Q Consensus 225 ~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 304 (502)
|...|.. ++..+...|++++|+++|..-++.. ++....+.+..+|++. +++++....+ + .++
T Consensus 1133 D~say~e--------Va~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl-~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1133 DPSSYME--------VVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT-NRLAELEEFI----N---GPN 1194 (1630)
T ss_pred ChHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh-cCHHHHHHHH----h---CCC
Confidence 2223333 6777778899999999998766543 4444444588999999 7787544432 1 334
Q ss_pred hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010739 305 LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL 383 (502)
Q Consensus 305 ~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 383 (502)
...+. .+-..|.. |++++|..+|... ..|..+...|++.|++++|.+.+++- -+..+|..+-
T Consensus 1195 ~ad~~-~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1195 NAHIQ-QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred HHHHH-HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 44444 35555667 9999999999762 38999999999999999999999876 3668898888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcccccc
Q 010739 384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQS 463 (502)
Q Consensus 384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 463 (502)
.+|...|++..|...... +.-+...+..++..|.+.|.+++|..+++.-+... +-....|.-+-..+++. .-
T Consensus 1258 ~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy--~p 1329 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF--KP 1329 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC--CH
Confidence 999999988888764432 34467778899999999999999999998765433 23344555555555431 14
Q ss_pred ccHHHHHHHHhhhhhc---------CCchhHHHHHHHhhcchhhh
Q 010739 464 GNVEAYLNLCKRLSDT---------SLIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 464 ~~~~~a~~~~~~m~~~---------~~~~~~li~~y~~~g~~~~~ 499 (502)
+++.++++.|..-... ..+++-++..|.+-|.++.|
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 6677777776544331 22577899999999988765
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=7.4e-10 Score=101.14 Aligned_cols=222 Identities=9% Similarity=0.003 Sum_probs=162.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC--CCC-
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL--KPG- 190 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~--~p~- 190 (502)
..|..+-..+.+.|++ +.|++.|+...+.. .+...|..+...+. ..|++++|...+++..+..- .++
T Consensus 6 ~~~~~~g~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQF-DEAIEHYNKAWELH-KDITYLNNRAAAEY--------EKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHS-CCTHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhccH-HHHHHHHHHHHHhh-ccHHHHHHHHHHHH--------HcccHHHHHHHHHHHHHhCcccccch
Confidence 3477788889999999 89999999999888 88888888888777 89999999999999877431 122
Q ss_pred ---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCC
Q 010739 191 ---FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKP 267 (502)
Q Consensus 191 ---~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 267 (502)
..+|..+...|.+.|++++|...|++..+.. |+ ...+...|++++|.+.+++.... .|
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~---------------~~~~~~~~~~~~a~~~~~~~~~~--~~ 136 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT---------------ADILTKLRNAEKELKKAEAEAYV--NP 136 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---------------HHHHHHHHHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch---------------hHHHHHHhHHHHHHHHHHHHHHc--Cc
Confidence 5889999999999999999999999998754 22 23344568888888888887764 33
Q ss_pred -CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739 268 -EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE 345 (502)
Q Consensus 268 -~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (502)
+...+..+...+... |++++|...+++..+..- .+...+. .+...|.. |++++|.+.|++........ ...|.
T Consensus 137 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~-~~~~~~~-~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~ 211 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAP-EDARGYS-NRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYI 211 (258)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred chHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCc-ccHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHhCHHH--HHHHH
Confidence 345666677777777 788888888877754321 1233333 35555666 77777777777766654332 34666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
.+...|.+.|++++|...|++..+
T Consensus 212 ~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 212 RKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677777777777777777776554
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=1.3e-08 Score=103.92 Aligned_cols=352 Identities=9% Similarity=-0.052 Sum_probs=210.9
Q ss_pred hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739 113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS 192 (502)
Q Consensus 113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 192 (502)
...|..++. +.+.|+. +.|..+|+.+.+..+-+...|...+.... +.|++++|..+|++..+. .|+..
T Consensus 13 ~~~w~~l~~-~~~~~~~-~~a~~~~e~al~~~P~~~~~w~~~~~~~~--------~~~~~~~a~~~~~ral~~--~p~~~ 80 (530)
T 2ooe_A 13 LDAWSILIR-EAQNQPI-DKARKTYERLVAQFPSSGRFWKLYIEAEI--------KAKNYDKVEKLFQRCLMK--VLHID 80 (530)
T ss_dssp HHHHHHHHH-HHHSSCH-HHHHHHHHHHHTTCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHTTT--CCCHH
T ss_pred HHHHHHHHH-HHHhCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhc--CCChH
Confidence 344777787 4788999 89999999999887457788988888665 889999999999999875 36888
Q ss_pred HHHHHHHHH-HhcCcHHHHHH----HHHHHHHc-CCCCCCccccccCCCCchHHHHHHH--------------HhCcHHH
Q 010739 193 MIEKVISLY-WEMEKKERAVL----FVKAVLSR-GIAYAEGDGEGQQGGPTGYLAWKMM--------------VEGKYVD 252 (502)
Q Consensus 193 ~y~~li~~~-~~~g~~~~A~~----l~~~m~~~-~~~p~~~ty~~~~~~~~~~~~~~~~--------------~~g~~~~ 252 (502)
.|...+... ...|+.++|.+ +|+..... |..|+. .-+|... ..|++++
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 148 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS------------YQIWVDYINFLKGVEAVGSYAENQRITA 148 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC------------HHHHHHHHHHHHHSCCCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc------------HHHHHHHHHHHhcCCCcccHHHHhHHHH
Confidence 887777543 34577666554 77766543 544431 1233221 1588999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHH---H--------H--hccccHHHHHHHHHHHH--HcC-------CCCc------
Q 010739 253 AIKLVIHLRESGLKPEVYSYLIALTA---V--------V--KELNEFGKALRKLKGYV--RAG-------SIAE------ 304 (502)
Q Consensus 253 a~~~~~~m~~~g~~p~~~ty~~li~~---~--------~--~~~~~~~~a~~~~~~m~--~~g-------~~p~------ 304 (502)
|.++|++.......+....|...... + . +. ++++.|..++.+.. ..+ +.|+
T Consensus 149 a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~-~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 149 VRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRS-RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 99999988873111112333322110 0 0 11 23444443333210 000 1111
Q ss_pred --------------------------------------------hhchHHHHHHHHh--------cCcHH-------hHH
Q 010739 305 --------------------------------------------LDGKNLGLIEKYQ--------SDLLA-------DGS 325 (502)
Q Consensus 305 --------------------------------------------~~~~~~~li~~~~--------~g~~~-------~a~ 325 (502)
...|. .....+. .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~-~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWY-EAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 11111 1222222 26655 677
Q ss_pred HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739 326 RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIE 403 (502)
Q Consensus 326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~ 403 (502)
.+|++....-.| .+...|..+...+.+.|++++|..+|++..+ +.|+. ..|......+.+.|++++|.++|+...
T Consensus 307 ~~~~~Al~~~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 307 NIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHTTTTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777766542222 3456777777777788888888888888776 34542 467777777777778888888887766
Q ss_pred HcCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC
Q 010739 404 VMNSLCKKKTLSWLLR-GYIKGGHINDAAETLTKMLDLGLYP-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL 481 (502)
Q Consensus 404 ~~~~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 481 (502)
.... .+...|..... .+...|+.++|..+|++.++.. | +...|..++..+.+ .|+.++|..+++.......
T Consensus 384 ~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~----~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 384 EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHSCC
T ss_pred hccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHh----CCCHhhHHHHHHHHHhccC
Confidence 5421 12222222111 2335788888888888776542 4 45566666666655 6888888888887755421
Q ss_pred --------chhHHHHHHHhhcchhhhh
Q 010739 482 --------IGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 482 --------~~~~li~~y~~~g~~~~~~ 500 (502)
+....+....+.|+.+.+.
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2222344455567666554
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.26 E-value=9.7e-09 Score=111.08 Aligned_cols=311 Identities=11% Similarity=0.052 Sum_probs=164.1
Q ss_pred cccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCC---CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC
Q 010739 109 DRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENR---VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV 185 (502)
Q Consensus 109 ~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 185 (502)
+...|++....+.+|...|.+ .+|+++++...-.+. -+...-+.++.... +. +.....++.+.....
T Consensus 981 e~~~PeeVs~~vKaf~~aglp-~EaieLLEKivl~~s~fs~n~~LqnlLi~tAI--------ka-D~~Rv~eyI~kLd~~ 1050 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLP-NELIELLEKIVLDNSVFSEHRNLQNLLILTAI--------KA-DRTRVMEYINRLDNY 1050 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCH-HHHHHHHHHHHcCCCcccccHHHHHHHHHHHH--------Hh-ChhhHHHHHHHhhhc
Confidence 455688899999999999999 799999999985543 24455555665444 22 334444444433321
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH-HhCcHHHHHHHHHHHHHcC
Q 010739 186 GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM-VEGKYVDAIKLVIHLRESG 264 (502)
Q Consensus 186 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~~m~~~g 264 (502)
+ ..-+-..+...|.+++|..+|++..... -.+..+. ..|++++|.++.++..
T Consensus 1051 ----d---~~eIA~Iai~lglyEEAf~IYkKa~~~~-----------------~A~~VLie~i~nldrAiE~Aervn--- 1103 (1630)
T 1xi4_A 1051 ----D---APDIANIAISNELFEEAFAIFRKFDVNT-----------------SAVQVLIEHIGNLDRAYEFAERCN--- 1103 (1630)
T ss_pred ----c---HHHHHHHHHhCCCHHHHHHHHHHcCCHH-----------------HHHHHHHHHHhhHHHHHHHHHhcC---
Confidence 1 2224455556666677766666642111 0111111 2356666666665431
Q ss_pred CCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhH
Q 010739 265 LKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVV 343 (502)
Q Consensus 265 ~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~ 343 (502)
+..+|..+-.++.+. |++++|.+.|.. . -|...|. -++..|.+ |++++|.+.+....... +.+. .
T Consensus 1104 ---~p~vWsqLAKAql~~-G~~kEAIdsYiK---A---dD~say~-eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~--I 1169 (1630)
T 1xi4_A 1104 ---EPAVWSQLAKAQLQK-GMVKEAIDSYIK---A---DDPSSYM-EVVQAANTSGNWEELVKYLQMARKKA-RESY--V 1169 (1630)
T ss_pred ---CHHHHHHHHHHHHhC-CCHHHHHHHHHh---c---CChHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhc-cccc--c
Confidence 345555666666666 566666554432 1 2223332 35556666 66666666665444333 1111 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739 344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK 423 (502)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 423 (502)
.+.+..+|++.+++++...+.. .|+...|..+-..|...|++++|..+|... ..|..+...|++
T Consensus 1170 dt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 2236666666666664333321 334445555556666666666666666553 255566666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcch
Q 010739 424 GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKL 496 (502)
Q Consensus 424 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~ 496 (502)
.|++++|.+.+++. -+..+|.-+-.+|.. .|+++.|...........-....+++.|.+.|.+
T Consensus 1234 Lge~q~AIEaarKA------~n~~aWkev~~acve----~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKA------NSTRTWKEVCFACVD----GKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred hCCHHHHHHHHHHh------CCHHHHHHHHHHHhh----hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence 66666666666653 233555555555544 4444444444322211111233444444444444
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.24 E-value=2.8e-09 Score=95.06 Aligned_cols=203 Identities=8% Similarity=-0.153 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
+...|..+...|.+.|++++|.+.|++..+.. |+ ...+.. +...+...|++++|.+.|++..... +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~--------l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLV--------RAEIYQYLKVNDKAQESFRQALSIK-PDS 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHH--------HHHHHHHcCChHHHHHHHHHHHHhC-CCC
Confidence 34566677777777777777777777766543 21 111111 3333344566666666665555431 123
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL 348 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 348 (502)
..++..+...+...+|++++|...+++..+.+..| .+...|..+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------~~~~~~~~l~ 120 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP-----------------------------------TPYIANLNKG 120 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS-----------------------------------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc-----------------------------------chHHHHHHHH
Confidence 34444444444444124555555555554322222 2233444455
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739 349 AMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (502)
..+.+.|++++|...|+++.+.. ..+...+..+...+...|++++|.+.++.........+...+..+...+...|+.+
T Consensus 121 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 55555555555555555544321 11234444444555555555555555554444332124444444555555556666
Q ss_pred HHHHHHHHHHH
Q 010739 429 DAAETLTKMLD 439 (502)
Q Consensus 429 ~A~~l~~~m~~ 439 (502)
.|..+++.+..
T Consensus 200 ~a~~~~~~~~~ 210 (225)
T 2vq2_A 200 AAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555543
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.24 E-value=2.3e-09 Score=97.80 Aligned_cols=201 Identities=11% Similarity=-0.069 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
...|..+...|...|++++|.+.|+++.+.. |+ ...+.. +...+...|++++|.+.|++..... +.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------la~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAA--------LAVVFQTEMEPKLADEEYRKALASD-SRNA 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHHC-cCcH
Confidence 3556666666666777777777766665443 11 111111 2233333455555555555444331 1133
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLA 349 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~ 349 (502)
..+..+...+.+. |++++|.+.+++. ...+..+.+...|..+..
T Consensus 106 ~~~~~la~~~~~~-g~~~~A~~~~~~~-----------------------------------~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 106 RVLNNYGGFLYEQ-KRYEEAYQRLLEA-----------------------------------SQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHH-----------------------------------TTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHH-----------------------------------HhCccCcccHHHHHHHHH
Confidence 3444444444444 4444444444444 332122223345555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010739 350 MYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIND 429 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 429 (502)
.|.+.|++++|...|++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|.+.|+.++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHH
Confidence 5666666666666666655432 1234555555566666666666666666554433 2345555556666666677777
Q ss_pred HHHHHHHHHHC
Q 010739 430 AAETLTKMLDL 440 (502)
Q Consensus 430 A~~l~~~m~~~ 440 (502)
|.+.++++.+.
T Consensus 228 A~~~~~~~~~~ 238 (252)
T 2ho1_A 228 AASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766666554
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.24 E-value=3.5e-09 Score=96.52 Aligned_cols=201 Identities=9% Similarity=-0.032 Sum_probs=156.8
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL 347 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 347 (502)
...|..+...+... +++++|.+.+++..+.. ..+...+. .+...|.. |++++|.+.|+++...... +...|..+
T Consensus 37 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~-~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQR-GNTEQAKVPLRKALEID-PSSADAHA-ALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHT-TCTGGGHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcC-CChHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHH
Confidence 35566677777777 78888888888875542 12333343 46666777 8899999988887776533 34588999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010739 348 LAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH 426 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 426 (502)
...|.+.|++++|..+|+++.+.+..|+ ...+..+...+...|++++|.+.++...... ..+...+..+...|.+.|+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999987545664 5567777789999999999999998887765 3367788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739 427 INDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 427 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~ 480 (502)
+++|.+.|++..+.. ..+...+..+...+.. .|+.++|.+.++.+.+..
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKV----FEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHC
Confidence 999999999988753 3456667777777766 799999999999987655
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.22 E-value=7.6e-10 Score=102.27 Aligned_cols=184 Identities=8% Similarity=-0.080 Sum_probs=118.0
Q ss_pred hhccHhhHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGL---KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~---~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~ 244 (502)
..+++++|...|+++.+... +.+..+|..+...|.+.|++++|...|++..+.+- .+...|.. +...+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~--------la~~~ 87 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNY--------LGIYL 87 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHH--------HHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHH--------HHHHH
Confidence 57899999999999988642 12467888899999999999999999999887641 12223333 45555
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~ 323 (502)
...|++++|++.|++..... +.+..++..+...+.+. |++++|...+++..+. .|+..... .....+.. |+.++
T Consensus 88 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~--~~~~~~~~-~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYG-GRDKLAQDDLLAFYQD--DPNDPFRS-LWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHH-HHHHHHHHHHCHHH
T ss_pred HHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh--CCCChHHH-HHHHHHHHhcCHHH
Confidence 56788888888888877652 22456777777777777 6788888877777543 23333222 23333344 67777
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
|...+++......+... .|. +...+...++.++|...+++..
T Consensus 163 A~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcchH--HHH-HHHHHHHhcCHHHHHHHHHHHh
Confidence 77766655554433222 333 4444555556666666666554
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.21 E-value=7e-09 Score=92.38 Aligned_cols=202 Identities=11% Similarity=-0.062 Sum_probs=157.4
Q ss_pred CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739 268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER 346 (502)
Q Consensus 268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 346 (502)
+...+..+...+... |++++|.+.+++..+.. ..+...+. .+...|.. |++++|.+.|++........ ..+|..
T Consensus 7 ~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRG-QDYRQATASIEDALKSD-PKNELAWL-VRAEIYQYLKVNDKAQESFRQALSIKPDS--AEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred cHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhC-ccchHHHH-HHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Confidence 346677778888888 78999999998885542 12234443 46666777 99999999999888765433 458889
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010739 347 LLAMYICA-GRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG 424 (502)
Q Consensus 347 li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 424 (502)
+...|... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++...... ..+...+..+...|.+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 99999999 999999999999988444454 5667778889999999999999999887765 23577888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 425 GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 425 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
|++++|.+.+++..+..-..+...+..+...+.. .|+.+++...++.+...
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA----LGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHh
Confidence 9999999999998875432456666666666555 79999999998887643
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.20 E-value=3.5e-09 Score=97.74 Aligned_cols=240 Identities=8% Similarity=-0.117 Sum_probs=179.6
Q ss_pred hCcHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739 247 EGKYVDAIKLVIHLRESGLKP---EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA 322 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p---~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~ 322 (502)
.|++++|++.|+++....... +..+|..+...+... |++++|...+++..+..- .+...+. .+...|.. |+++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~-~~~~~~~-~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL-GLRALARNDFSQALAIRP-DMPEVFN-YLGIYLTQAGNFD 94 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCC-CCHHHHH-HHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcCC-CcHHHHH-HHHHHHHHccCHH
Confidence 589999999999998763221 357788888899999 899999999999865531 2344554 57777888 9999
Q ss_pred hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
+|.+.|++......... ..|..+...|.+.|++++|...|+++.+. .|+...+...+..+...|+.++|...++..
T Consensus 95 ~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccc--HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999888754443 48999999999999999999999999874 566666666666667789999999999766
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 403 EVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY--P-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
.... .++...+ .+...+...++.++|.+.+++....... | +...+..+-..+.. .|+.++|...++.....
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS----LGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC
Confidence 6544 2343343 3777788888999999999987654321 1 14666777777766 79999999999988664
Q ss_pred CC-chhHHHHHHHhhcchhhh
Q 010739 480 SL-IGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 480 ~~-~~~~li~~y~~~g~~~~~ 499 (502)
.. ........+.+.|+++.+
T Consensus 245 ~p~~~~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 245 NVHNFVEHRYALLELSLLGQD 265 (275)
T ss_dssp CCTTCHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHHHhh
Confidence 32 233445566666666543
No 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=2.2e-10 Score=107.88 Aligned_cols=242 Identities=14% Similarity=0.028 Sum_probs=157.1
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-------CCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHH
Q 010739 188 KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR-------GIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHL 260 (502)
Q Consensus 188 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m 260 (502)
+.+..++..+...|...|++++|..+|++..+. .-......+.. +...+...|++++|.+.|++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------la~~~~~~g~~~~A~~~~~~a 95 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI--------LALVYRDQNKYKDAANLLNDA 95 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHH--------HHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH--------HHHHHHHCCCHHHHHHHHHHH
Confidence 335678999999999999999999999998763 11111112222 455555679999999999988
Q ss_pred HHc------CCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739 261 RES------GLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA------GSIAELDGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 261 ~~~------g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~~li~~~~~-g~~~~a~~ 326 (502)
... +-.| ...++..+...+... |++++|.+.+++..+. +-.|+.......+...|.. |++++|.+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 96 LAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 764 2233 356778888888888 8999999999988543 3334333222246666888 99999999
Q ss_pred HHHHHHHc------CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHH-------HHHHHHHH
Q 010739 327 LSSWAIQE------GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-------GKEADGDL-------YDIVLAIC 386 (502)
Q Consensus 327 ~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t-------~~~li~~~ 386 (502)
.|++.... +..+....++..+...|.+.|++++|...+++..+. ...+.... +..+...+
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence 99888775 334445568888999999999999999999998753 12222111 11222233
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 387 ASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 387 ~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
...+.+.++...++...... ..+..++..+...|.+.|++++|.+.|++..+
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344444444444433222 22456677788889999999999999988654
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.13 E-value=1e-08 Score=94.59 Aligned_cols=223 Identities=12% Similarity=0.068 Sum_probs=109.1
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc--cccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG--DGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--ty~~~~~~~~~~~~~~~~ 245 (502)
..|++++|...|++..+..- -+...+..+...|.+.|++++|.+.|++..+..-.|+.. .|.. +...+.
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--------lg~~~~ 85 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY--------YGKILM 85 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH--------HHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH--------HHHHHH
Confidence 56666666666666655421 233355556666666666666666666665522111110 0111 333334
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHH
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGS 325 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~ 325 (502)
..|++++|++.|++..+.. +-+..+|..+-..+.+. |++++|.+.+++..+. .|+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~--~~~--------------------- 140 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRP--TTT--------------------- 140 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCS--SCC---------------------
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhc--CCC---------------------
Confidence 4455555555555555431 11234445555555555 4555555555444222 221
Q ss_pred HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 010739 326 RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNE---GSAVSRLLSR 401 (502)
Q Consensus 326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~---~~~a~~l~~~ 401 (502)
+...|..+...+...+++++|...|++..+. .|+ ...+..+-..+...|+ .++|...++.
T Consensus 141 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 141 --------------DPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 2223433331222233555555555555542 222 3344444444444454 5555555543
Q ss_pred HHHcC-CCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 402 IEVMN-SLCK------KKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 402 m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
..... ..|+ ...|..+-..|.+.|++++|.+.|++..+.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33221 1222 245566777777777777777777777654
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.13 E-value=2.7e-09 Score=101.25 Aligned_cols=261 Identities=11% Similarity=0.026 Sum_probs=161.9
Q ss_pred hhccHhhHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCCC-CccccccCCCCch
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPG----FSMIEKVISLYWEMEKKERAVLFVKAVLSR----GIAYA-EGDGEGQQGGPTG 238 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~~ty~~~~~~~~~ 238 (502)
..|++++|...|++..+..-. + ...|..+...|...|++++|.+.+++..+. +-.|. ...+..
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------- 88 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN------- 88 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------
T ss_pred HhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH-------
Confidence 789999999999999886322 3 467889999999999999999999887543 11111 111112
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHcC-CCCC----HhHHHHHHHHHHhcccc--------------------HHHHHHHH
Q 010739 239 YLAWKMMVEGKYVDAIKLVIHLRESG-LKPE----VYSYLIALTAVVKELNE--------------------FGKALRKL 293 (502)
Q Consensus 239 ~~~~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~ty~~li~~~~~~~~~--------------------~~~a~~~~ 293 (502)
+...+...|++++|.+.+++..... -.++ ..++..+-..+... |+ +++|.+.+
T Consensus 89 -l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 89 -LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 4445555799999999988865531 1112 33677777777777 67 88888877
Q ss_pred HHHHH----cCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHH
Q 010739 294 KGYVR----AGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQ 363 (502)
Q Consensus 294 ~~m~~----~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l 363 (502)
++... .+..+.. ..+. .+...|.. |++++|.+.+++..... .+.....++..+...|...|++++|...
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFG-NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66522 1222221 1222 34455666 88888888776655432 1222233666777777777888888777
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhCCCHHHHHHH
Q 010739 364 LWEMKLVGK-EAD----GDLYDIVLAICASQNEGSAVSRLLSRIEVMN----SLC-KKKTLSWLLRGYIKGGHINDAAET 433 (502)
Q Consensus 364 ~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~l 433 (502)
+++..+..- .++ ..++..+-..+...|++++|.+.++...... ..+ ...++..+...|.+.|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 776653210 011 3345555566777777777777765443321 111 133455566677777777777777
Q ss_pred HHHHHH
Q 010739 434 LTKMLD 439 (502)
Q Consensus 434 ~~~m~~ 439 (502)
+++..+
T Consensus 326 ~~~a~~ 331 (338)
T 3ro2_A 326 AEKHLE 331 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.13 E-value=7e-08 Score=89.20 Aligned_cols=223 Identities=10% Similarity=-0.077 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHcCC
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRESGL 265 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~ 265 (502)
+..++..+-..|.+.|++++|.+.|++..+.+ +...+.. +...+.. .|++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~--------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFN--------LGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHH--------HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHH--------HHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 45566677777778888888888888777633 1111111 3344444 677888888888777665
Q ss_pred CCCHhHHHHHHHHHHh----ccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh-----cCcHHhHHHHHHHHHHcCC
Q 010739 266 KPEVYSYLIALTAVVK----ELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ-----SDLLADGSRLSSWAIQEGG 336 (502)
Q Consensus 266 ~p~~~ty~~li~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~-----~g~~~~a~~~~~~m~~~~~ 336 (502)
+...+..+-..+.. . ++.++|++.+++..+.+ +...+. .+-..|. .++.++|.+.|++....+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~-~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLK---YAEGCA-SLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHH-HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred --CHHHHHHHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC---CccHHH-HHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 56666667777777 6 67888888877776654 233332 2333333 367777777777777654
Q ss_pred CCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 010739 337 SSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS----QNEGSAVSRLLSRIEVMNSL 408 (502)
Q Consensus 337 ~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~l~~~m~~~~~~ 408 (502)
+...+..+-..|.. .+++++|...|++..+.+ +...+..+-..+.. .++.++|.+.++.....+
T Consensus 145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 216 (273)
T 1ouv_A 145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-- 216 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--
Confidence 22366666667776 778888888888777654 34556666667777 778888888877766654
Q ss_pred CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 010739 409 CKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLG 441 (502)
Q Consensus 409 p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 441 (502)
+...+..+-..|.+ .++.++|.+.|++..+.|
T Consensus 217 -~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 25566667777777 778888888888776655
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.13 E-value=6.1e-09 Score=94.15 Aligned_cols=194 Identities=14% Similarity=0.056 Sum_probs=141.3
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS- 318 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~- 318 (502)
....+...|++++|...|++.... .+.+...+..+...+.+. +++++|.+.+++..+..- .+...+. .+...|..
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~-~la~~~~~~ 104 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSV-NELERALAFYDKALELDS-SAATAYY-GAGNVYVVK 104 (243)
T ss_dssp -------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHH-HHHHHHHHT
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC-cchHHHH-HHHHHHHHh
Confidence 445556679999999999998864 233577788888888888 799999999988855431 2334443 46666777
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|++++|.+.|+++....... ...|..+...+.+.|++++|...+++..+.. ..+...+..+...+...|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAGMEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999888766444 3478888888999999999999999987653 23567777788888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
++...... ..+..++..+...|.+.|++++|.+.|++..+..
T Consensus 182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 98877654 3357788888899999999999999999887643
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.12 E-value=5.3e-09 Score=93.42 Aligned_cols=193 Identities=13% Similarity=-0.018 Sum_probs=107.6
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE 226 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 226 (502)
+...+..+-..+. +.|++++|...|++..+.. +-+...|..+-..|.+.|++++|...|++..+.+ |+.
T Consensus 4 ~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~ 72 (217)
T 2pl2_A 4 AEQNPLRLGVQLY--------ALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRY 72 (217)
T ss_dssp CCHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred cHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc
Confidence 5556666666666 8999999999999988753 3477889999999999999999999999998765 442
Q ss_pred c-cccccCCCCchHHHHHHHHh-----------CcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHH
Q 010739 227 G-DGEGQQGGPTGYLAWKMMVE-----------GKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKL 293 (502)
Q Consensus 227 ~-ty~~~~~~~~~~~~~~~~~~-----------g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~ 293 (502)
. .+.. +...+... |++++|+..|++..+. .| +...+..+-..+... |++++|+..+
T Consensus 73 ~~a~~~--------lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~-g~~~~A~~~~ 141 (217)
T 2pl2_A 73 LGGYMV--------LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALL-GERDKAEASL 141 (217)
T ss_dssp HHHHHH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHH--------HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHc-CChHHHHHHH
Confidence 1 1111 33333334 5666666666555543 23 234444455555555 4555555555
Q ss_pred HHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010739 294 KGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWE 366 (502)
Q Consensus 294 ~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 366 (502)
++..+.. .+...+. .+-..|.. |++++|...|++........ ...+..+...+.+.|++++|...|++
T Consensus 142 ~~al~~~--~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 142 KQALALE--DTPEIRS-ALAELYLSMGRLDEALAQYAKALEQAPKD--LDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHC--CCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTC-------------
T ss_pred HHHHhcc--cchHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5554443 2333332 24444444 55555555555544433222 23444555555555555555555544
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.12 E-value=6.7e-09 Score=101.65 Aligned_cols=261 Identities=13% Similarity=0.027 Sum_probs=185.4
Q ss_pred hhccHhhHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCCC-CccccccCCCCch
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPG----FSMIEKVISLYWEMEKKERAVLFVKAVLSR----GIAYA-EGDGEGQQGGPTG 238 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~~ty~~~~~~~~~ 238 (502)
..|++++|...|++..+.+- .+ ..+|..+...|...|++++|...+++..+. +-.|. ...+..
T Consensus 21 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------- 92 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN------- 92 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred HhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH-------
Confidence 78999999999999988632 23 367889999999999999999999987543 11111 111212
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcccc--------------------HHHHHHHH
Q 010739 239 YLAWKMMVEGKYVDAIKLVIHLRES----GLKP-EVYSYLIALTAVVKELNE--------------------FGKALRKL 293 (502)
Q Consensus 239 ~~~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~~~~--------------------~~~a~~~~ 293 (502)
+...+...|++++|+..+++.... +-.+ ...++..+-..+... |+ +++|.+.+
T Consensus 93 -la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 93 -LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 444555579999999999987654 1111 134777788888888 78 99999988
Q ss_pred HHHHH----cCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHH
Q 010739 294 KGYVR----AGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQ 363 (502)
Q Consensus 294 ~~m~~----~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l 363 (502)
.+..+ .+..+.. ..+. .+-..|.. |++++|.+.|++..... .+.....+|..+...|...|++++|...
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFG-NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHH-HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 77632 2222222 2332 45566777 99999999998876543 2222234788889999999999999999
Q ss_pred HHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCCHHHHHHH
Q 010739 364 LWEMKLV----GKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNS-LCK----KKTLSWLLRGYIKGGHINDAAET 433 (502)
Q Consensus 364 ~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l 433 (502)
+++..+. +-.+. ..++..+-..+...|++++|.+.++....... ..+ ..++..+...|.+.|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987643 11111 45677777899999999999999976644321 112 45667788899999999999999
Q ss_pred HHHHHH
Q 010739 434 LTKMLD 439 (502)
Q Consensus 434 ~~~m~~ 439 (502)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.12 E-value=1.4e-08 Score=93.64 Aligned_cols=227 Identities=9% Similarity=-0.025 Sum_probs=162.5
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh--chHHHHHHHHh
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD--GKNLGLIEKYQ 317 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~~li~~~~ 317 (502)
...+...|++++|++.|++..+. .| +...+..+...+.+. |++++|.+.+++..+.+-.++.. .+. .+-..|.
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~lg~~~~ 85 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFSKVNATKAKSADFE-YYGKILM 85 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCTTTCCHHHHH-HHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhccCchhHHHHHHH-HHHHHHH
Confidence 34445567777777777777654 23 334677777777788 78888888888876644222221 133 3555677
Q ss_pred c-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 010739 318 S-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAV 395 (502)
Q Consensus 318 ~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a 395 (502)
. |++++|.+.|++.........+ .|..+...|.+.|++++|...|++..+. .|+ ...|..+-..+...+++++|
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLD--MYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTH--HHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7 8888898888888776544434 8999999999999999999999988765 454 44555555255556799999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHcccccccc
Q 010739 396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH---INDAAETLTKMLDLG-LYPE------YMDRVAVLQGLRKRIQQSGN 465 (502)
Q Consensus 396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~t~~~ll~~~~~~~~~~~~ 465 (502)
.+.++...... ..+...+..+...+...|+ .++|...|++..+.. -.|+ ...|..+-..+.. .|+
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 236 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRD 236 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCC
Confidence 99999887765 2346777778888888888 888999998887642 2233 2456666666666 799
Q ss_pred HHHHHHHHhhhhhcC
Q 010739 466 VEAYLNLCKRLSDTS 480 (502)
Q Consensus 466 ~~~a~~~~~~m~~~~ 480 (502)
.++|...+++..+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999986654
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.11 E-value=1.2e-08 Score=91.03 Aligned_cols=197 Identities=14% Similarity=0.006 Sum_probs=126.9
Q ss_pred CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739 266 KPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH 344 (502)
Q Consensus 266 ~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (502)
+++...+..+-..+.+. |++++|...+++..+. .|+.......+-..+.+ |++++|...|++........ ...|
T Consensus 2 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYAL-GRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--LGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHH
Confidence 34556666777777777 6788888777776543 34333222245555666 88888888887777665333 3477
Q ss_pred HHHHHHHHHc-----------CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 010739 345 ERLLAMYICA-----------GRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKK 412 (502)
Q Consensus 345 ~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~ 412 (502)
..+-..|.+. |++++|...|++..+. .|+ ...+..+-..+...|++++|.+.++...... .+..
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 7777778887 8888888888887754 453 4556666678888888888888888777766 6777
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 413 TLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
.+..+-..|...|++++|...|++..+.. +-+...+..+-..+.. .|+.++|...+++.
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL----KGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence 88888888888888888888888877643 1244555666666655 68888888877654
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.10 E-value=2.5e-09 Score=105.30 Aligned_cols=261 Identities=10% Similarity=0.014 Sum_probs=174.3
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHcC----CCCC-CccccccCCCCch
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGF----SMIEKVISLYWEMEKKERAVLFVKAVLSRG----IAYA-EGDGEGQQGGPTG 238 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~-~~ty~~~~~~~~~ 238 (502)
..|++++|...|++..+.+-. +. ..|..+...|...|++++|...|++..+.. -.|. ...+..
T Consensus 60 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------- 131 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN------- 131 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred HhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH-------
Confidence 789999999999999886322 32 578899999999999999999999876541 1111 111111
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcccc-----------------HHHHHHHHHHH
Q 010739 239 YLAWKMMVEGKYVDAIKLVIHLRES----GLKP-EVYSYLIALTAVVKELNE-----------------FGKALRKLKGY 296 (502)
Q Consensus 239 ~~~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~~~~-----------------~~~a~~~~~~m 296 (502)
+...+...|++++|++.|++.... +-.| ...++..+-..+... |+ +++|.+.+.+.
T Consensus 132 -l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 132 -LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 444555579999999999887654 2122 235677777788888 78 88888887765
Q ss_pred HH----cCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010739 297 VR----AGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWE 366 (502)
Q Consensus 297 ~~----~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 366 (502)
.+ .+-.+.. ..+. .+-..|.. |++++|.+.|++..... .+.....+|..+...|...|++++|...+++
T Consensus 210 l~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACG-NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 32 2222222 2232 35555777 88888888887765533 1111233677788888888888888888887
Q ss_pred HHHCCCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 367 MKLVGKE-A----DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN----SL-CKKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 367 m~~~g~~-p----~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
..+..-. . ...++..+-..+...|++++|.+.++...... .. ....++..+...|.+.|+.++|.+.|++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6643110 1 13456666678888888888888886554321 11 1134566677888888888888888887
Q ss_pred HHH
Q 010739 437 MLD 439 (502)
Q Consensus 437 m~~ 439 (502)
..+
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.09 E-value=1e-07 Score=88.04 Aligned_cols=223 Identities=11% Similarity=-0.059 Sum_probs=175.6
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCC
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE----MEKKERAVLFVKAVLSRGI 222 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~~~ 222 (502)
++..+..+-..+. ..+++++|...|++..+. -+...+..+-..|.+ .+++++|.+.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~--------~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSY--------KEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp CHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 4555665655555 789999999999998883 356788889999999 999999999999998876
Q ss_pred CCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----ccccHHHHHHHHH
Q 010739 223 AYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVK----ELNEFGKALRKLK 294 (502)
Q Consensus 223 ~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~----~~~~~~~a~~~~~ 294 (502)
+...+.. +...+.. .+++++|++.|++..+.+ +...+..+-..+.+ . ++.++|++.++
T Consensus 73 --~~~a~~~--------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~ 138 (273)
T 1ouv_A 73 --YSNGCHL--------LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT-RDFKKAVEYFT 138 (273)
T ss_dssp --CHHHHHH--------HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC-CCHHHHHHHHH
T ss_pred --CHHHHHH--------HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc-cCHHHHHHHHH
Confidence 2222322 4555566 899999999999998875 67788888888888 7 79999999999
Q ss_pred HHHHcCCCCchhchHHHHHHHHh-----cCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHH
Q 010739 295 GYVRAGSIAELDGKNLGLIEKYQ-----SDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLW 365 (502)
Q Consensus 295 ~m~~~g~~p~~~~~~~~li~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~ 365 (502)
+..+.+ +...+. .+-..|. .++.++|.+.|++..+.+. ...+..+-..|.+ .+++++|+..|+
T Consensus 139 ~a~~~~---~~~a~~-~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 139 KACDLN---DGDGCT-ILGSLYDAGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHTT---CHHHHH-HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHhcC---cHHHHH-HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 987766 233332 2444444 4899999999999887742 3478888889999 999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 010739 366 EMKLVGKEADGDLYDIVLAICAS----QNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 366 ~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~l~~~m~~~~ 406 (502)
+..+.+- ...+..+-..+.. .++.++|.+.++.....+
T Consensus 211 ~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 211 KACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9988752 5666777778887 899999999998887766
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=1.2e-07 Score=95.13 Aligned_cols=300 Identities=11% Similarity=-0.036 Sum_probs=191.3
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV--------GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
....||.+-..+. ..|+.++|++.|++-.+. .-+....+|+.+-..|...|++++|...+++..
T Consensus 50 ~a~~yn~Lg~~~~--------~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 50 KATMCNLLAYLKH--------LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp CCHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4567888877777 889999999999876442 122346789999999999999999999998876
Q ss_pred HcC---CCC---CC-ccccccCCCCchHHHHHHHH--hCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcc--ccH
Q 010739 219 SRG---IAY---AE-GDGEGQQGGPTGYLAWKMMV--EGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKEL--NEF 286 (502)
Q Consensus 219 ~~~---~~p---~~-~ty~~~~~~~~~~~~~~~~~--~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~--~~~ 286 (502)
+.. ..+ +. .+|.. .-|+... .+++++|++.|++.... .|+ ...+..+..++.+.+ ++.
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCE--------EGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHH--------HHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhHhcccccchhhHHHHHH--------HHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHH
Confidence 432 111 10 11111 2333443 36899999999988765 454 334444444433321 566
Q ss_pred HHHHHHHHHHHHcCCCCch-hchHHHHHHH----Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHH
Q 010739 287 GKALRKLKGYVRAGSIAEL-DGKNLGLIEK----YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEA 360 (502)
Q Consensus 287 ~~a~~~~~~m~~~g~~p~~-~~~~~~li~~----~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (502)
++|++.+++..+. .|+. ..+. .+... +.. |+.++|.+.+++......... ..+..+-..|.+.|++++|
T Consensus 192 ~~al~~~~~al~l--~p~~~~~~~-~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 192 QNAIDPLRQAIRL--NPDNQYLKV-LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT--DVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCTHHHHHHHHHH--CSSCHHHHH-HHHHHHHHCC------CHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhc--CCcchHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHcCchHHH
Confidence 7787777766443 3432 2222 12222 333 788999999998877654443 4889999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhc-------------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010739 361 ERQLWEMKLVGKEAD-GDLYDIVLAICASQ-------------------NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRG 420 (502)
Q Consensus 361 ~~l~~~m~~~g~~p~-~~t~~~li~~~~~~-------------------~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 420 (502)
...+++..+. .|+ ...+..+-..+... +..+.|...++...... ..+...+..+-..
T Consensus 267 ~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 267 IELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence 9999998864 454 34444443333221 22345666666555544 3356677889999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH-HccccccccHHHHHHHHhhh
Q 010739 421 YIKGGHINDAAETLTKMLDLGLYPEYM--DRVAVLQGL-RKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 421 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~-~~~~~~~~~~~~a~~~~~~m 476 (502)
|...|++++|.+.|++.++....|... .+..+-..+ .. .|+.++|+..+++.
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ----MKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT----SSCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence 999999999999999998876544332 111111111 22 57788888777655
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.07 E-value=9.4e-09 Score=92.89 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=146.0
Q ss_pred CCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739 267 PEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH 344 (502)
Q Consensus 267 p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (502)
....+|..+-..+.+. |++++|...+++..+. .|+ ...+. .+...|.. |++++|.+.|++....... +...|
T Consensus 21 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~--~~~~~~~~~-~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 94 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEF-GDYEKAAEAFTKAIEE--NKEDAIPYI-NFANLLSSVNELERALAFYDKALELDSS--AATAY 94 (243)
T ss_dssp ----------------------CCTTHHHHHTT--CTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH
T ss_pred hHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHh--CcccHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHH
Confidence 3456677777788888 7999999999988653 333 34443 46667778 9999999999998877543 34589
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010739 345 ERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG 424 (502)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 424 (502)
..+...|.+.|++++|...+++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|.+.
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 999999999999999999999998754 3356778888899999999999999998887664 33677888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739 425 GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS 480 (502)
Q Consensus 425 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~ 480 (502)
|++++|.+.|++..+.. ..+..++..+...+.. .|+.++|...+++..+..
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAY----KENREKALEMLDKAIDIQ 223 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccC
Confidence 99999999999988764 2356677778888877 799999999999886644
No 56
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=7.5e-08 Score=96.53 Aligned_cols=306 Identities=11% Similarity=-0.002 Sum_probs=197.0
Q ss_pred hhhHHHHHHHHHHcCCChHHHHHHHHHHHHc-----C---CC-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHh
Q 010739 113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKE-----N---RV-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMD 183 (502)
Q Consensus 113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-----~---~~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 183 (502)
...||.+-..+...|++ ++|++.|++..+. + .| ...+|+.+-.++. ..|++++|...+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~-~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~--------~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQN-EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY--------HMGRLSDVQIYVDKVK 121 (472)
T ss_dssp CHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH--------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH--------HcCChHHHHHHHHHHH
Confidence 34489998999999999 8999999876532 1 23 3457887777677 8999999999998765
Q ss_pred hC-----C-CC-CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHH
Q 010739 184 CV-----G-LK-PGFSMIEKVISLYWEM--EKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAI 254 (502)
Q Consensus 184 ~~-----g-~~-p~~~~y~~li~~~~~~--g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~ 254 (502)
+. + .. -...+|+.+-.++.+. +++++|...|++..+.+ |+...+.. ....+.......++.++|+
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~----~~~~~~~~l~~~~~~~~al 195 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTS----GLAIASYRLDNWPPSQNAI 195 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHH----HHHHHHHHHHHSCCCCCTH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHHhcCchHHHHHH
Confidence 42 1 11 1345676666666554 57999999999987754 54322111 0000111122247778888
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcc---ccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHhHHHHHH
Q 010739 255 KLVIHLRESGLKPEVYSYLIALTAVVKEL---NEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSS 329 (502)
Q Consensus 255 ~~~~~m~~~g~~p~~~ty~~li~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~ 329 (502)
+.|++..+.. +.+..++..+...+.+.+ ++.++|.+.+++..... |+. ..+. .+-..|.. |++++|.+.|+
T Consensus 196 ~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~-~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 196 DPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLR-SAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHH-HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHH-HHHHHHHHcCchHHHHHHHH
Confidence 8888776542 224455555555555542 56788988888775442 332 3333 57777888 99999999999
Q ss_pred HHHHcCCCCchHhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010739 330 WAIQEGGSSLYGVVHERLLAMYIC-------------------AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN 390 (502)
Q Consensus 330 ~m~~~~~~~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~ 390 (502)
+........ ..+|..+-..|.. .+..++|...+++..+.. ..+..++..+-..+...|
T Consensus 272 ~al~~~p~~--~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 272 KALEYIPNN--AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHSTTC--HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHhCCCh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 988765433 3466666555432 233567777777766542 223445677778999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhCCCHHHHHHHHHHHHHC
Q 010739 391 EGSAVSRLLSRIEVMNSLCKKK--TLSWLLR-GYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 391 ~~~~a~~l~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~l~~~m~~~ 440 (502)
++++|.+.|+........+... .+..+.. .+...|+.++|.+.|++....
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999998877655333221 1222222 345789999999999987764
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.06 E-value=2.1e-08 Score=98.03 Aligned_cols=274 Identities=11% Similarity=-0.020 Sum_probs=192.8
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-----ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHH
Q 010739 188 KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRE 262 (502)
Q Consensus 188 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~ 262 (502)
......+...-..+.+.|++++|...|++..+.+ |+. ..|.. +...+...|++++|...|++...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQ--------LGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHH--------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456677778888999999999999999998764 331 12222 45555667999999999998654
Q ss_pred c----CCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCc-hhchHHHHHHHHhc-Cc-----------
Q 010739 263 S----GLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAE-LDGKNLGLIEKYQS-DL----------- 320 (502)
Q Consensus 263 ~----g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~~li~~~~~-g~----------- 320 (502)
. +-.|. ..++..+-..+... |++++|...+++..+. +-.+. ...+. .+-..|.. |+
T Consensus 76 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~~~~~~~~~ 153 (406)
T 3sf4_A 76 LARTIGDQLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALY-NLGNVYHAKGKSFGCPGPQDVG 153 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHTCC-------C
T ss_pred HHHhccccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHcCCcccccccchhh
Confidence 3 22232 45677788888888 8999999998877322 21111 22333 45556777 99
Q ss_pred ---------HHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHH
Q 010739 321 ---------LADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG-KEAD----GDLYDIV 382 (502)
Q Consensus 321 ---------~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~l 382 (502)
+++|.+.+++..... ..+....+|..+-..|...|++++|...+++..+.. -.++ ..++..+
T Consensus 154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 233 (406)
T 3sf4_A 154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233 (406)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999987765432 223334578888899999999999999999876531 1122 2367777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 010739 383 LAICASQNEGSAVSRLLSRIEVMNS-LCK----KKTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPE-YMDRVAV 452 (502)
Q Consensus 383 i~~~~~~~~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 452 (502)
-..+...|++++|.+.++....... .++ ..++..+...|...|++++|.+.+++..+. +-.+. ..++..+
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 313 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7899999999999999976643321 111 456777889999999999999999988753 21111 3455556
Q ss_pred HHHHHccccccccHHHHHHHHhhhh
Q 010739 453 LQGLRKRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 453 l~~~~~~~~~~~~~~~a~~~~~~m~ 477 (502)
-..+.. .|+.++|...+++..
T Consensus 314 a~~~~~----~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 314 GNAYTA----LGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHH----HTCHHHHHHHHHHHH
T ss_pred HHHHHH----cCCHHHHHHHHHHHH
Confidence 666655 799999999888763
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.04 E-value=1.2e-08 Score=100.36 Aligned_cols=272 Identities=14% Similarity=0.003 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-----ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc--
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES-- 263 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~-- 263 (502)
...+..+-..+.+.|++++|...|++..+.+ |+. ..|.. +...+...|++++|++.|++....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~--------lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQ--------LGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHH--------HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3455567778899999999999999998864 332 12222 455556679999999999987654
Q ss_pred --CCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCch-hchHHHHHHHHhc-Cc--------------
Q 010739 264 --GLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAEL-DGKNLGLIEKYQS-DL-------------- 320 (502)
Q Consensus 264 --g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~~li~~~~~-g~-------------- 320 (502)
+-.| ...++..+-..+... |++++|...+++..+. +-.+.. ..+. .+-..|.. |+
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALY-NLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHcCcccccccchhhhhhh
Confidence 2222 346677788888888 8999999998887332 222222 2333 45666777 99
Q ss_pred ---HHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 010739 321 ---LADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD----GDLYDIVLAICAS 388 (502)
Q Consensus 321 ---~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~ 388 (502)
+++|.+.+++.... +.++....+|..+-..|...|++++|...+++..+..- .++ ...+..+...+..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999998776543 22233445888888999999999999999998765311 112 2367777789999
Q ss_pred cCChhHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHc
Q 010739 389 QNEGSAVSRLLSRIEVMNS-LC----KKKTLSWLLRGYIKGGHINDAAETLTKMLDLG----LYP-EYMDRVAVLQGLRK 458 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~~~~~-~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~t~~~ll~~~~~ 458 (502)
.|++++|.+.++....... .. ...++..+...|...|++++|.+.+++..+.. -.+ ...++..+-..+..
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 9999999999976544321 11 24567778899999999999999999887532 111 13355566666666
Q ss_pred cccccccHHHHHHHHhhhhh
Q 010739 459 RIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 459 ~~~~~~~~~~a~~~~~~m~~ 478 (502)
.|+.++|...+++..+
T Consensus 356 ----~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 356 ----IGGHERALKYAEQHLQ 371 (411)
T ss_dssp ----TTCHHHHHHHHHHHHH
T ss_pred ----hccHHHHHHHHHHHHH
Confidence 7999999999887744
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.03 E-value=2e-08 Score=95.09 Aligned_cols=271 Identities=13% Similarity=0.005 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-----ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc---
Q 010739 192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES--- 263 (502)
Q Consensus 192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~--- 263 (502)
..+...-..+.+.|++++|...|++..+.+ |+. ..|.. +...+...|++++|++.+++....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQ--------LGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 345556677889999999999999998764 332 22222 455566679999999999986543
Q ss_pred -CCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCc-hhchHHHHHHHHhc-Cc---------------
Q 010739 264 -GLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAE-LDGKNLGLIEKYQS-DL--------------- 320 (502)
Q Consensus 264 -g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~~li~~~~~-g~--------------- 320 (502)
+-.|. ..++..+-..+... |++++|...+++..+. +-.+. ..++. .+...|.. |+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 76 IGDQLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALY-NLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHTSSSSSCC----CCH
T ss_pred ccccHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHH-HHHHHHHHcCcccccchhhhhhhhhh
Confidence 22222 45677788888888 8999999998887322 11111 12333 45566777 99
Q ss_pred -----HHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q 010739 321 -----LADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD----GDLYDIVLAIC 386 (502)
Q Consensus 321 -----~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~ 386 (502)
+++|.+.+++.... +..+....++..+...|...|++++|...+++..+..- .++ ..++..+...+
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 99999998776543 22233345788888899999999999999998764311 112 23677777899
Q ss_pred HhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHH
Q 010739 387 ASQNEGSAVSRLLSRIEVMNS-LCK----KKTLSWLLRGYIKGGHINDAAETLTKMLDLG----LYP-EYMDRVAVLQGL 456 (502)
Q Consensus 387 ~~~~~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~t~~~ll~~~ 456 (502)
...|++++|.+.++....... ..+ ..++..+...|...|++++|.+.+++..+.. -.+ ...++..+-..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 999999999999976543321 112 4566678889999999999999999886532 111 133555666666
Q ss_pred HccccccccHHHHHHHHhhhhh
Q 010739 457 RKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 457 ~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
.. .|+.++|...+++..+
T Consensus 314 ~~----~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 314 TA----LGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HH----HTCHHHHHHHHHHHHH
T ss_pred HH----cCChHHHHHHHHHHHH
Confidence 66 7999999999887754
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.98 E-value=2e-07 Score=87.95 Aligned_cols=222 Identities=9% Similarity=-0.065 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccH-------hhHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 010739 131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGV-------GDVVDLLVDMDCVGLKP-GFSMIEKVISLYW 202 (502)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~-------~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~ 202 (502)
+.|..+|+.......-++..|..+...+......+. +.|++ ++|...|++..+. +.| +...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA-EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhh-hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 478889999888764577888877775441100000 23664 8999999998873 234 5668999999999
Q ss_pred hcCcHHHHHHHHHHHHHcCCCCCCc--cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739 203 EMEKKERAVLFVKAVLSRGIAYAEG--DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV 280 (502)
Q Consensus 203 ~~g~~~~A~~l~~~m~~~~~~p~~~--ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 280 (502)
+.|++++|.++|++..+. .|+.. .|.. ........|++++|.++|++..+.. +++...|........
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~--------~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ--------YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHH--------HHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHH--------HHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 999999999999988763 34321 1222 2222333566777777776665532 122222322211111
Q ss_pred -hccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC-CCC-chHhHHHHHHHHHHHcC
Q 010739 281 -KELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG-GSS-LYGVVHERLLAMYICAG 355 (502)
Q Consensus 281 -~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~-~~~-~~~~~~~~li~~~~~~g 355 (502)
.. |+.++|..+|+...+. .|+ ...+. .++..+.+ |+.++|..+|++..... .++ .....|..++..+.+.|
T Consensus 180 ~~~-~~~~~A~~~~~~al~~--~p~~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 180 YCS-KDKSVAFKIFELGLKK--YGDIPEYVL-AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HTS-CCHHHHHHHHHHHHHH--HTTCHHHHH-HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHc-CCHHHHHHHHHHHHHh--CCCcHHHHH-HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 13 4566666655555322 122 12221 34444444 55555555555555432 121 12334555555555555
Q ss_pred ChHHHHHHHHHHHH
Q 010739 356 RGLEAERQLWEMKL 369 (502)
Q Consensus 356 ~~~~A~~l~~~m~~ 369 (502)
+.++|..+++++.+
T Consensus 256 ~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 256 DLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.96 E-value=2.3e-08 Score=93.94 Aligned_cols=239 Identities=12% Similarity=-0.035 Sum_probs=154.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739 148 NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV-------GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR 220 (502)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~ 220 (502)
..++..+...+. ..|++++|..+|++..+. .......++..+...|...|++++|...+++..+.
T Consensus 27 ~~~~~~l~~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 27 LRTLHNLVIQYA--------SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346666666666 899999999999998873 23345678999999999999999999999988754
Q ss_pred ------CCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHHhccccH
Q 010739 221 ------GIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES------GLKPE-VYSYLIALTAVVKELNEF 286 (502)
Q Consensus 221 ------~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~ty~~li~~~~~~~~~~ 286 (502)
+-.|. ...|.. +...+...|++++|.+.|++.... +-.|+ ...+..+...+... |++
T Consensus 99 ~~~~~~~~~~~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~ 169 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNN--------LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKY 169 (311)
T ss_dssp HHHHHCTTCHHHHHHHHH--------HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHhCCCChHHHHHHHH--------HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCH
Confidence 21121 122222 455555679999999999988765 22333 45677788888888 899
Q ss_pred HHHHHHHHHHHHc------CCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC-------CCCch------HhHHHH
Q 010739 287 GKALRKLKGYVRA------GSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG-------GSSLY------GVVHER 346 (502)
Q Consensus 287 ~~a~~~~~~m~~~------g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~-------~~~~~------~~~~~~ 346 (502)
++|.+.+++..+. +..|+.......+...|.. |++++|.+.|+++.... ..+.. ...+..
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 249 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 9999999988543 2234333222256777888 99999999998877531 11111 112222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
+...+...+.+.+|...+....... ..+..++..+...+...|++++|.+.++....
T Consensus 250 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 250 CKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333344555555666666554321 22445677777899999999999999876654
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.93 E-value=1.8e-07 Score=90.93 Aligned_cols=225 Identities=8% Similarity=-0.026 Sum_probs=156.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhcc-HhhHHHHHHHHhhCCCCCCHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERG-VGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
|..+-..+.+.|++ +.|++.|+...+...-+...|+.+-.++. ..|+ +++|+..|++..+..- -+...|
T Consensus 100 ~~~lg~~~~~~g~~-~~Al~~~~~al~l~P~~~~a~~~~g~~l~--------~~g~d~~eAl~~~~~al~l~P-~~~~a~ 169 (382)
T 2h6f_A 100 YDYFRAVLQRDERS-ERAFKLTRDAIELNAANYTVWHFRRVLLK--------SLQKDLHEEMNYITAIIEEQP-KNYQVW 169 (382)
T ss_dssp HHHHHHHHHHTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHCCCh-HHHHHHHHHHHHhCccCHHHHHHHHHHHH--------HcccCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 77777888899999 89999999999888447788888877676 7786 9999999999988643 377899
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL 273 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 273 (502)
+.+-.+|.+.|++++|...|++..+.+ |+. ..|.. +.+.+...|++++|+..|+++..... -+...|+
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~--------lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~ 238 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQH--------RQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWN 238 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHH--------HHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHH
Confidence 999999999999999999999998765 321 22222 44555557999999999999887622 2567788
Q ss_pred HHHHHHHhccccHHHH-----HHHHHHHHHcCCCCchh-chHHHHHHHHhc-C--cHHhHHHHHHHHHHcCCCCchHhHH
Q 010739 274 IALTAVVKELNEFGKA-----LRKLKGYVRAGSIAELD-GKNLGLIEKYQS-D--LLADGSRLSSWAIQEGGSSLYGVVH 344 (502)
Q Consensus 274 ~li~~~~~~~~~~~~a-----~~~~~~m~~~g~~p~~~-~~~~~li~~~~~-g--~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (502)
.+-.++.+.++..++| +..+++.++. .|+.. .|+ .+...+.+ | +.++|.+.+.++ ...+.+...+
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~-~l~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~al 312 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWN-YLKGILQDRGLSKYPNLLNQLLDL---QPSHSSPYLI 312 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHH-HHHHHHTTTCGGGCHHHHHHHHHH---TTTCCCHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHH-HHHHHHHccCccchHHHHHHHHHh---ccCCCCHHHH
Confidence 8888888832444555 3555555332 34332 232 34444555 5 466676666654 2223344566
Q ss_pred HHHHHHHHHcC---------ChHHHHHHHHHH
Q 010739 345 ERLLAMYICAG---------RGLEAERQLWEM 367 (502)
Q Consensus 345 ~~li~~~~~~g---------~~~~A~~l~~~m 367 (502)
..+...|.+.| ..++|..+|+++
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 66666666653 246666676665
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.92 E-value=7.1e-07 Score=84.14 Aligned_cols=217 Identities=9% Similarity=-0.071 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-------hccccH-------HHHHHHHHHHHHcCCCCchh-chHHHHHHH
Q 010739 251 VDAIKLVIHLRESGLKPEVYSYLIALTAVV-------KELNEF-------GKALRKLKGYVRAGSIAELD-GKNLGLIEK 315 (502)
Q Consensus 251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~-------~~~~~~-------~~a~~~~~~m~~~g~~p~~~-~~~~~li~~ 315 (502)
++|..+|++.... .+-+...|..+...+. +. |+. ++|...|++-++. +.|+.. .|. .+...
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~-~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEK-GDMNNAKLFSDEAANIYERAIST-LLKKNMLLYF-AYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhc-cchhhcccchHHHHHHHHHHHHH-hCcccHHHHH-HHHHH
Confidence 6788888888765 2334566666666654 34 454 8998888887652 245544 443 67777
Q ss_pred Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChh
Q 010739 316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAIC-ASQNEGS 393 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~-~~~~~~~ 393 (502)
+.+ |++++|.++|++.........+ ..|..+...+.+.|++++|..+|++..+.. .++...|....... ...|+.+
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcCCHHHHHHHHHHHHhccccCcc-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 888 9999999999998874322221 389999999999999999999999988653 23344444333332 2369999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccccccccHHHHH
Q 010739 394 AVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG-LYPE--YMDRVAVLQGLRKRIQQSGNVEAYL 470 (502)
Q Consensus 394 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~~~~~a~ 470 (502)
+|.++|+...... .-+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++..... .|+.+.|.
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~----~g~~~~a~ 261 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN----IGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH----HSCHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH----cCCHHHHH
Confidence 9999998776653 2367788889999999999999999999999874 5663 5667777777765 68999999
Q ss_pred HHHhhhhh
Q 010739 471 NLCKRLSD 478 (502)
Q Consensus 471 ~~~~~m~~ 478 (502)
.+++.+.+
T Consensus 262 ~~~~~a~~ 269 (308)
T 2ond_A 262 KVEKRRFT 269 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887744
No 64
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.91 E-value=2.7e-07 Score=89.58 Aligned_cols=241 Identities=12% Similarity=0.010 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCc-HHHHHHHHHHHHHcCCCC-C
Q 010739 192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGK-YVDAIKLVIHLRESGLKP-E 268 (502)
Q Consensus 192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~-~~~a~~~~~~m~~~g~~p-~ 268 (502)
..|+.+-..+.+.|++++|.+.|++..+.+ |+.. .|+. ....+...|+ +++|++.|++.... .| +
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~--------~g~~l~~~g~d~~eAl~~~~~al~l--~P~~ 165 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHF--------RRVLLKSLQKDLHEEMNYITAIIEE--QPKN 165 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHH--------HHHHHHHcccCHHHHHHHHHHHHHH--CCCC
Confidence 455556666666677777777777666544 3211 1111 2223333464 77777777766654 23 4
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER 346 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 346 (502)
...|+.+-.++.+. |++++|+..+++.++. .|+ ...|. .+-..+.+ |++++|+..|++++...... ...|+.
T Consensus 166 ~~a~~~~g~~~~~~-g~~~eAl~~~~kal~l--dP~~~~a~~-~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~ 239 (382)
T 2h6f_A 166 YQVWHHRRVLVEWL-RDPSQELEFIADILNQ--DAKNYHAWQ-HRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQ 239 (382)
T ss_dssp HHHHHHHHHHHHHH-TCCTTHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHH
T ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--CccCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 56666677777777 6788888877777544 333 33333 45556666 88888888888877765444 348888
Q ss_pred HHHHHHH-cCChHHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010739 347 LLAMYIC-AGRGLEA-----ERQLWEMKLVGKEA-DGDLYDIVLAICASQN--EGSAVSRLLSRIEVMNSLCKKKTLSWL 417 (502)
Q Consensus 347 li~~~~~-~g~~~~A-----~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~l 417 (502)
+-..|.+ .|..++| +..|++..+ +.| +...|+.+-..+...| +.++|.+.+..+ . ....+...+..+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~L 315 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFL 315 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHH
Confidence 8888888 6665777 467777665 345 4556666667777777 577888877776 2 223356677778
Q ss_pred HHHHHhCC---------CHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHH
Q 010739 418 LRGYIKGG---------HINDAAETLTKM-LDLGLYPEYM-DRVAVLQGL 456 (502)
Q Consensus 418 i~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~~~-t~~~ll~~~ 456 (502)
...|.+.| ..++|.++|+++ .+ +.|+.. -|..+...+
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHH
Confidence 88887764 258888888887 43 345443 344444444
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.90 E-value=2.5e-07 Score=90.17 Aligned_cols=296 Identities=9% Similarity=-0.084 Sum_probs=176.7
Q ss_pred HHcCCChHHHHHHHHHHHHcC-C--CChH--HHHHHHHHHhhhhhhhhhhhccHhhHH-----------HHHHHHhhCCC
Q 010739 124 SQEGRDSWCALEVFEWLKKEN-R--VDNE--TMELMVSIMCSWVKKYIEEERGVGDVV-----------DLLVDMDCVGL 187 (502)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~-~--~~~~--~~~~li~~~~~~~~~~~~~~~~~~~a~-----------~~~~~m~~~g~ 187 (502)
.+.++. +.|..+++++.+.- . .|.. .|-.++..-... -.+.++.+. ..++.+.....
T Consensus 23 i~~~~~-~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~------~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~ 95 (383)
T 3ulq_A 23 IRRFSI-PDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNL------MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA 95 (383)
T ss_dssp HHTTCH-HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------HHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH
T ss_pred HHHcCH-HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH------HHhhcCcccccccccccchhhHHHHHHhcCC
Confidence 456778 79999999987644 2 3333 334343321111 123333333 55665544211
Q ss_pred CCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CCCC----ccccccCCCCchHHHHHHHHhCcHHHHHHHHH
Q 010739 188 KPG----FSMIEKVISLYWEMEKKERAVLFVKAVLSRGI-AYAE----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVI 258 (502)
Q Consensus 188 ~p~----~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 258 (502)
..+ ...|-..-..+...|++++|...|++..+.-- .+|. ..|.. +...+...|++++|++.++
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~--------lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFK--------MSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHH--------HHHHHHHTTCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH--------HHHHHHHcCCHHHHHHHHH
Confidence 111 11122244567789999999999999876421 1221 12222 4555556799999999998
Q ss_pred HHHHc--CC---CC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCch-hchHHHHHHHHhc-CcHHhHHH
Q 010739 259 HLRES--GL---KP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAEL-DGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 259 ~m~~~--g~---~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~~li~~~~~-g~~~~a~~ 326 (502)
+.... .. .| ...+++.+-..|... |++++|...+++..+. +-.+.. .++. .+-..|.. |++++|.+
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEAEKQPQLMGRTLY-NIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHHCCCHHHHHH
Confidence 87654 11 11 135677777888888 7999999988877322 211111 2333 35555777 88888888
Q ss_pred HHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---hhHH
Q 010739 327 LSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG----KEADGDLYDIVLAICASQNE---GSAV 395 (502)
Q Consensus 327 ~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~li~~~~~~~~---~~~a 395 (502)
.|++.... +..+....++..+-..|.+.|++++|...+++..+.. -......+..+-..+...|+ +++|
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 325 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 88877662 2213345678888888888888888888888765431 11112234445566667777 5555
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 396 SRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 396 ~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
..+++.. +..|+ ...+..+-..|.+.|++++|.+.|++..+
T Consensus 326 l~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 326 FDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555443 33332 33555577788888888888888887654
No 66
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.89 E-value=8e-08 Score=88.61 Aligned_cols=134 Identities=12% Similarity=0.034 Sum_probs=79.3
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHc------
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRA------GSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQE------ 334 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~------ 334 (502)
..++..+-..+... |++++|...+++..+. +-.|.. ..+. .+-..|.. |++++|.+.|++....
T Consensus 43 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 43 ATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLN-NLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH-HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 45566666666666 6777777777666332 222322 2232 35555666 7777777777665554
Q ss_pred CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 335 GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV------GKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
...+....+|..+...|...|++++|...|++..+. +-.| ...++..+-..+...|++++|.+.++....
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112334456666777777777777777777776654 1122 234555566677777777777777755543
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.84 E-value=1.1e-06 Score=75.56 Aligned_cols=166 Identities=14% Similarity=0.034 Sum_probs=108.4
Q ss_pred CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739 268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER 346 (502)
Q Consensus 268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 346 (502)
++..|..+-..+.+. |++++|++.|++..+. .|+.......+...|.+ |++++|...+........... ..+..
T Consensus 4 ~~~iy~~lG~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTK-GDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHH
Confidence 455677777777777 6777777777776443 23322221245555666 777777777776665544433 36666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH 426 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 426 (502)
+...+...+++++|...+.+..... .-+...+..+-..+...|++++|.+.++...... ..+...|..+-..|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 6667777777777777777766532 2234555666677777777777777777666554 2356667777777788888
Q ss_pred HHHHHHHHHHHHHC
Q 010739 427 INDAAETLTKMLDL 440 (502)
Q Consensus 427 ~~~A~~l~~~m~~~ 440 (502)
+++|.+.|++.++.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888776653
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.82 E-value=1.3e-06 Score=84.97 Aligned_cols=296 Identities=9% Similarity=-0.009 Sum_probs=190.3
Q ss_pred hhccHhhHHHHHHHHhhCC--C--CCCHHHHHHHHHHHH--hcCcHHHHH-----------HHHHHHHHcCCCCCC-ccc
Q 010739 168 EERGVGDVVDLLVDMDCVG--L--KPGFSMIEKVISLYW--EMEKKERAV-----------LFVKAVLSRGIAYAE-GDG 229 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g--~--~p~~~~y~~li~~~~--~~g~~~~A~-----------~l~~~m~~~~~~p~~-~ty 229 (502)
+.+++++|..++++..+.- . .++...|-.++..-. -.++++.+. +.++.+.......+. ..|
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~ 103 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEY 103 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHH
Confidence 5899999999999886642 2 334444444443322 234444444 666666442211010 000
Q ss_pred cccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc--CC-
Q 010739 230 EGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES----GLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA--GS- 301 (502)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~--g~- 301 (502)
-. .-.....+...|++++|++.|++.... +-.+ ...+|..+-..+... |+.++|...+.+..+. ..
T Consensus 104 ~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 104 YF-----NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCS
T ss_pred HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCc
Confidence 00 000122234469999999999998764 1122 236778888888888 8999999998877332 11
Q ss_pred --CCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC---
Q 010739 302 --IAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--- 370 (502)
Q Consensus 302 --~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 370 (502)
.+. ..+++ .+-..|.. |++++|.+.|++..... .+.....+|+.+-..|...|++++|...|++..+.
T Consensus 178 ~~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 178 AYNIRLLQCHS-LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp TTHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 111 22333 35556788 99999999998876543 22223357888999999999999999999988762
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCC
Q 010739 371 -GK-EADGDLYDIVLAICASQNEGSAVSRLLSRIEVM----NSLCKKKTLSWLLRGYIKGGH---INDAAETLTKMLDLG 441 (502)
Q Consensus 371 -g~-~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g 441 (502)
+. .....++..+-..+...|++++|.+.++..... +.......+..+-..|...|+ +++|+.++++. +
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~ 333 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M 333 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c
Confidence 33 234566777788999999999999999765433 212223345667778888898 77888887765 4
Q ss_pred CCCCHH-HHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739 442 LYPEYM-DRVAVLQGLRKRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 442 ~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~ 477 (502)
..|+.. .+..+-..+.. .|+.++|...+++..
T Consensus 334 ~~~~~~~~~~~la~~y~~----~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHE----RKNFQKASAYFLKVE 366 (383)
T ss_dssp CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Confidence 444433 44455555555 799999999887763
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.81 E-value=2.1e-06 Score=83.03 Aligned_cols=261 Identities=10% Similarity=-0.056 Sum_probs=172.9
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCC----ccccccCCCCch
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGF----SMIEKVISLYWEMEKKERAVLFVKAVLSRGIA-YAE----GDGEGQQGGPTG 238 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~----~ty~~~~~~~~~ 238 (502)
..|++++|...+++.....-..+. .+++.+-..|...|++++|.+.+++..+..-. ++. .++..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------- 98 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ------- 98 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-------
Confidence 689999999999987765322222 25677778889999999999999987653211 010 00111
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHc----CCC--CC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC--Cc--hhc
Q 010739 239 YLAWKMMVEGKYVDAIKLVIHLRES----GLK--PE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSI--AE--LDG 307 (502)
Q Consensus 239 ~~~~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~--p~--~~~ 307 (502)
+...+...|++++|.+.+++.... +.. |. ...+..+-..+... |++++|...+++.....-. +. ...
T Consensus 99 -la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 99 -QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred -HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 334445579999999999987653 222 33 34566677778888 8999999999887443221 21 122
Q ss_pred hHHHHHHHHhc-CcHHhHHHHHHHHHHcC-CCCchHhHHH-----HHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHH
Q 010739 308 KNLGLIEKYQS-DLLADGSRLSSWAIQEG-GSSLYGVVHE-----RLLAMYICAGRGLEAERQLWEMKLVGKEA---DGD 377 (502)
Q Consensus 308 ~~~~li~~~~~-g~~~~a~~~~~~m~~~~-~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ 377 (502)
+. .+-..+.. |++++|...+++..... ..... ..+. .....+...|++++|...+++.......+ ...
T Consensus 177 ~~-~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 177 LA-MLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HH-HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 32 35555777 99999999998876542 11111 1222 23344778999999999998876543221 123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 378 LYDIVLAICASQNEGSAVSRLLSRIEVM----NSLCKK-KTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 378 t~~~li~~~~~~~~~~~a~~l~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
.+..+...+...|+.++|...++..... +..++. ..+..+-..|...|+.++|...+++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566668888999999999988765332 222222 2555577788899999999999988764
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.80 E-value=5.7e-07 Score=76.93 Aligned_cols=161 Identities=13% Similarity=0.003 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739 271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLL 348 (502)
Q Consensus 271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 348 (502)
.|..+...+... |++++|.+.+++..+. .| +...+. .+...|.. |++++|.+.+++....... +...|..+.
T Consensus 10 ~~~~~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a 83 (186)
T 3as5_A 10 YYRDKGISHAKA-GRYSQAVMLLEQVYDA--DAFDVDVAL-HLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHTTTCCT--TSCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHh--CccChHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Confidence 344455555555 5666666666555322 12 222222 34444555 6666666666665554322 233666666
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739 349 AMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 428 (502)
..+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 66666777777777776665542 2244555555566666677777766666655543 224556666666777777777
Q ss_pred HHHHHHHHHHH
Q 010739 429 DAAETLTKMLD 439 (502)
Q Consensus 429 ~A~~l~~~m~~ 439 (502)
+|.+.+++..+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.79 E-value=4.7e-06 Score=80.60 Aligned_cols=274 Identities=10% Similarity=-0.048 Sum_probs=174.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC-CCCH---
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL-KPEV--- 269 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--- 269 (502)
+...-..+...|++++|...+++..... |+...... ......+...+...|++++|.+.+++.....- .++.
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSR--IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHH--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3344455678999999999999987654 22111000 00000133445557999999999998765310 1122
Q ss_pred -hHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCC--CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCC---C
Q 010739 270 -YSYLIALTAVVKELNEFGKALRKLKGYVRA----GSI--AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGS---S 338 (502)
Q Consensus 270 -~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~--p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~---~ 338 (502)
.++..+-..+... |++++|...+++..+. +.. |........+-..|.. |++++|...+++....... +
T Consensus 93 ~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 93 LWSLIQQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 3355566677777 8999999999887332 322 3222221135555677 9999999999987765422 1
Q ss_pred chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCCC---
Q 010739 339 LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG-DLYD-----IVLAICASQNEGSAVSRLLSRIEVMNSLC--- 409 (502)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~-----~li~~~~~~~~~~~a~~l~~~m~~~~~~p--- 409 (502)
....+|..+-..+...|++++|...+++.....-.++. ..+. .....+...|+.++|...++........+
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 13356778888899999999999999998754222211 1222 22344778999999999998775433221
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 410 KKKTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPEYM-DRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
....+..+...+...|++++|.+.+++.... |..++.. .+..+-.++.. .|+.++|...++..
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ----AGRKSDAQRVLLDA 319 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 1224566788899999999999999987643 3322332 34444444444 68889988887765
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.79 E-value=7.3e-07 Score=76.76 Aligned_cols=163 Identities=15% Similarity=-0.020 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
+..+|..+-..|.+.|++++|.+.|++..+.+ |+. ..+.. +...+...|++++|++.+....... .-+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~--------la~~~~~~~~~~~a~~~~~~~~~~~-~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLK--------LGKTYMDIGLPNDAIESLKKFVVLD-TTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHhcC-chh
Confidence 56778888888999999999999998887654 332 11212 3444455688888888777776552 223
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER 346 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 346 (502)
...+..+-..+... ++.+.+...+.+..+. .|+ ...+. .+-..|.+ |++++|.+.|++..+.... +..+|..
T Consensus 73 ~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~--~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~ 146 (184)
T 3vtx_A 73 AEAYYILGSANFMI-DEKQAAIDALQRAIAL--NTVYADAYY-KLGLVYDSMGEHDKAIEAYEKTISIKPG--FIRAYQS 146 (184)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CccchHHHH-HHHHHHHHhCCchhHHHHHHHHHHhcch--hhhHHHH
Confidence 44455555556666 6777777777666433 222 22222 35555666 7777777777776665433 2346777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 010739 347 LLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+-..|.+.|++++|...|++..+
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.78 E-value=2e-07 Score=93.63 Aligned_cols=211 Identities=10% Similarity=-0.040 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccH-hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 010739 131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGV-GDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKER 209 (502)
Q Consensus 131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 209 (502)
+.+++.++........+...|..+-..+. ..|++ ++|...|++..+.. +-+...|..+-..|.+.|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~--------~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALN--------VTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHT--------SSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHH--------hccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 57777777766555447778877777677 89999 99999999988753 2357899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh---------CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739 210 AVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE---------GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV 280 (502)
Q Consensus 210 A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~ 280 (502)
|.+.|++..+.. |+...+.. +...+... |++++|++.|++..+.. +-+...|..+-.++.
T Consensus 156 A~~~~~~al~~~--p~~~~~~~--------lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 224 (474)
T 4abn_A 156 AHTCFSGALTHC--KNKVSLQN--------LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYL 224 (474)
T ss_dssp HHHHHHHHHTTC--CCHHHHHH--------HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--CCHHHHHH--------HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 999999998765 55333333 44555556 89999999999988752 224566666666666
Q ss_pred hc-----c--ccHHHHHHHHHHHHHcCCCC----chhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739 281 KE-----L--NEFGKALRKLKGYVRAGSIA----ELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLL 348 (502)
Q Consensus 281 ~~-----~--~~~~~a~~~~~~m~~~g~~p----~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li 348 (502)
.. . +++++|++.|++..+. .| +...+. .+-..|.. |++++|.+.|++........ ...+..+-
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~a~~~l~ 299 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHL-NRATLHKYEESYGEALEGFSQAAALDPAW--PEPQQREQ 299 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHH
Confidence 54 0 3688888888777543 23 333333 35555666 77777777777766654333 23666666
Q ss_pred HHHHHcCChHHHHHHHHH
Q 010739 349 AMYICAGRGLEAERQLWE 366 (502)
Q Consensus 349 ~~~~~~g~~~~A~~l~~~ 366 (502)
..+...|++++|...+.+
T Consensus 300 ~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 777777777777655443
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.76 E-value=4.4e-07 Score=83.53 Aligned_cols=234 Identities=12% Similarity=-0.012 Sum_probs=123.9
Q ss_pred hhccHhhHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHH
Q 010739 168 EERGVGDVVDLLVDMDC-------VGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYL 240 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~-------~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~ 240 (502)
..|++++|..++++..+ ...+....++..+-..|...|++++|...+++..+..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------- 73 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR------------------- 73 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-------------------
Confidence 45666666666665544 2223346788888899999999999999988776431
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCCc-hhchHHHHH
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRA------GSIAE-LDGKNLGLI 313 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~~li 313 (502)
++...........+|..+-..+... |++++|.+.+.+..+. .-.|+ ...+. .+.
T Consensus 74 -----------------~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~la 134 (283)
T 3edt_B 74 -----------------EKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN-NLA 134 (283)
T ss_dssp -----------------HHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-HHH
T ss_pred -----------------HHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH-HHH
Confidence 0000000001122344444444444 4555555554444222 11122 12222 344
Q ss_pred HHHhc-CcHHhHHHHHHHHHHc------CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHH
Q 010739 314 EKYQS-DLLADGSRLSSWAIQE------GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-------GKEADGDLY 379 (502)
Q Consensus 314 ~~~~~-g~~~~a~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~ 379 (502)
..|.. |++++|.+.|++.... ...+....++..+...|.+.|++++|...+++..+. ...+....+
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 44555 6666666666555543 123334457777888888888888888888877653 123332222
Q ss_pred HHHH-HHHHhcCChhHHHHHHHHH---HHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 380 DIVL-AICASQNEGSAVSRLLSRI---EVMNS--LCKKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 380 ~~li-~~~~~~~~~~~a~~l~~~m---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
...+ ......+....+..+.... ...+. .....++..+...|.+.|++++|.++|++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222 2222222222222221111 11111 11345677789999999999999999998765
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.73 E-value=9.6e-07 Score=75.49 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=129.3
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
.+...+.. |++++|.+.|+++.... +.+...|..+...+...|++++|...+++..+.. ..+...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 35555777 99999999997765443 2345689999999999999999999999988753 33567788888999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHH
Q 010739 390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAY 469 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a 469 (502)
|++++|.+.++...... ..+...+..+...|...|++++|.+.+++..+.. ..+...+..+...+.. .|+.++|
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~----~~~~~~A 163 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQ----MGRHEEA 163 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHH----cCCHHHH
Confidence 99999999998887764 3467788889999999999999999999988764 3356777777777776 7999999
Q ss_pred HHHHhhhhh
Q 010739 470 LNLCKRLSD 478 (502)
Q Consensus 470 ~~~~~~m~~ 478 (502)
...++...+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
No 76
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.71 E-value=1.2e-06 Score=87.42 Aligned_cols=323 Identities=10% Similarity=-0.002 Sum_probs=173.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccH---hhHHHHHHHHhhCCCCCCHHHHH
Q 010739 119 VLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGV---GDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 119 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+-..+.+.|++ +.|.++|+...+.|.++. +..+-..+. ..|+. ++|..+|++..+. +...+.
T Consensus 9 la~~~~~~g~~-~~A~~~~~~aa~~g~~~A--~~~Lg~~y~--------~~g~~~d~~~A~~~~~~A~~~----~~~A~~ 73 (452)
T 3e4b_A 9 LANEALKRGDT-VTAQQNYQQLAELGYSEA--QVGLADIQV--------GTRDPAQIKQAEATYRAAADT----SPRAQA 73 (452)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHTCCTG--GGTCC----------------------------------------CHH
T ss_pred HHHHHHhCCCH-HHHHHHHHHHHHCCCHHH--HHHHHHHHH--------ccCCCCCHHHHHHHHHHHHhC----CHHHHH
Confidence 34445566777 688888877777663333 222222222 33444 7777777766543 444455
Q ss_pred HHHHHHHhcC-----cHHHHHHHHHHHHHcCCCCCCccccc------------------------cCCCCchH--HHHHH
Q 010739 196 KVISLYWEME-----KKERAVLFVKAVLSRGIAYAEGDGEG------------------------QQGGPTGY--LAWKM 244 (502)
Q Consensus 196 ~li~~~~~~g-----~~~~A~~l~~~m~~~~~~p~~~ty~~------------------------~~~~~~~~--~~~~~ 244 (502)
.|-..+...| +.++|.+.|++..+.|... ..++. +.+.+... +...+
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY 151 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555444444 6777777777776655221 10100 00000000 11111
Q ss_pred HHhC----cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccc---cHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh
Q 010739 245 MVEG----KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELN---EFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ 317 (502)
Q Consensus 245 ~~~g----~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~ 317 (502)
...+ ..+++..+++... ..+...+..+-..|.+. | +.++|++.|+.-.+.|.......+ .|-.+|.
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~aa~~g~~~a~~~~--~Lg~~y~ 224 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKK-QQPEQQAELLKQMEAGVSRGTVTAQRVD--SVARVLG 224 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCSCHHHHH--HHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHh
Confidence 1122 3333333333322 22333667777777777 6 788888888888777643333223 2555554
Q ss_pred c-----CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 318 S-----DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM-Y--ICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 318 ~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
. ++.++|.+.|++.. .+.+ ..+..+-.. | ...++.++|+..|++..+.| +...+..+-..|. .
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g~~----~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PGYP----ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GGST----HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred CCCCCCCCHHHHHHHHHHHc-CCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 4 37888999888876 3322 356556555 3 35889999999999888777 4555555555555 4
Q ss_pred C-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccc
Q 010739 390 N-----EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRI 460 (502)
Q Consensus 390 ~-----~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 460 (502)
| +.++|.+.++... .| +...+..|-..|.. ..+.++|.+.|++..+.|. |+. ...|-..|..-.
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGK 368 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCT
T ss_pred CCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCC
Confidence 4 8888888887666 33 55666666666665 3488999999999888775 333 223333333322
Q ss_pred cccccHHHHHHHHhhhhhcCC
Q 010739 461 QQSGNVEAYLNLCKRLSDTSL 481 (502)
Q Consensus 461 ~~~~~~~~a~~~~~~m~~~~~ 481 (502)
....+.+.|...++...+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 224588899999888888773
No 77
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.66 E-value=4.1e-06 Score=83.54 Aligned_cols=217 Identities=10% Similarity=-0.085 Sum_probs=145.1
Q ss_pred HHHHHHHhC---cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-c--ccHHHHHHHHHHHHHcCCCCchhchHHHHH
Q 010739 240 LAWKMMVEG---KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE-L--NEFGKALRKLKGYVRAGSIAELDGKNLGLI 313 (502)
Q Consensus 240 ~~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~-~--~~~~~a~~~~~~m~~~g~~p~~~~~~~~li 313 (502)
+-..+...| +.++|++.|+.-.+.|. ++...+..+-..|... + ++.++|++.|+... .|. ...+. .|-
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~-~Lg 255 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWV-SLA 255 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHH-HHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHH-HHH
Confidence 344444578 99999999999888764 3444434455555332 1 58999999998876 332 22222 344
Q ss_pred HH-H--hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010739 314 EK-Y--QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAG-----RGLEAERQLWEMKLVGKEADGDLYDIVLA 384 (502)
Q Consensus 314 ~~-~--~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 384 (502)
.. | .. ++.++|.+.|++....+. ...+..|-..|. .| +.++|+..|++.. . -+...+..+-.
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~ 326 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAADQ----PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQ 326 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHH
Confidence 44 3 34 999999999999888763 337777777776 55 9999999999876 3 34555555555
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 385 ICAS----QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 385 ~~~~----~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
.|.. ..+.++|.+.++.....|. ......|-..|.. ..+.++|...|+...+.|.. +.......+..-
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~ 402 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAP 402 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHh
Confidence 5554 3489999999998887773 3445555555654 46899999999999998853 333333233222
Q ss_pred HccccccccHHHHHHHHhhhhhc
Q 010739 457 RKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 457 ~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
.. .++++++..+.++....
T Consensus 403 ~~----~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 403 LT----PAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CC----HHHHHHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHHHHh
Confidence 23 56788888887776543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.66 E-value=1.6e-05 Score=77.10 Aligned_cols=302 Identities=9% Similarity=-0.079 Sum_probs=179.7
Q ss_pred HHHHHHH--HHcCCChHHHHHHHHHHHHcC---CCChH--HHHHHHHHHhhhhhhhhhhhccHhhHH---------HHHH
Q 010739 117 QLVLVYF--SQEGRDSWCALEVFEWLKKEN---RVDNE--TMELMVSIMCSWVKKYIEEERGVGDVV---------DLLV 180 (502)
Q Consensus 117 ~~ll~~~--~~~~~~~~~a~~~~~~m~~~~---~~~~~--~~~~li~~~~~~~~~~~~~~~~~~~a~---------~~~~ 180 (502)
+.+-.+| .+.++. +.|.++++++.+.. ..|.. .|-.++..-... -.+.+..+. ..++
T Consensus 14 ~~l~~wy~~i~~~~~-~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~------~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 14 VKINEWYKMIRQFSV-PDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQL------MLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHH------HHHTCCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH------HHhhcCcccccccccchHHHHH
Confidence 3334444 677888 89999999987644 23332 334443311100 112222222 5555
Q ss_pred HHhhCCCCCC--H--HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCC----ccccccCCCCchHHHHHHHHhCcHH
Q 010739 181 DMDCVGLKPG--F--SMIEKVISLYWEMEKKERAVLFVKAVLSRGIA-YAE----GDGEGQQGGPTGYLAWKMMVEGKYV 251 (502)
Q Consensus 181 ~m~~~g~~p~--~--~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~----~ty~~~~~~~~~~~~~~~~~~g~~~ 251 (502)
.+.....+.+ . ..|-..-..+...|++++|...|++..+.--. ++. ..|.. +...+...|+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~--------lg~~y~~~~~~~ 158 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFK--------VAEAYYHMKQTH 158 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHH--------HHHHHHHTTCHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHH--------HHHHHHHcCCcH
Confidence 5544221111 1 12223334457899999999999998754211 221 11222 445555679999
Q ss_pred HHHHHHHHHHHc--CC---CC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCc-hhchHHHHHHHHhc-C
Q 010739 252 DAIKLVIHLRES--GL---KP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAE-LDGKNLGLIEKYQS-D 319 (502)
Q Consensus 252 ~a~~~~~~m~~~--g~---~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~~li~~~~~-g 319 (502)
+|+..+++.... .. .+ ...+++.+-..|... |++++|.+.+++..+. +-.+. ..++. .+-..|.. |
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~lg~~y~~~~ 236 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLL-NIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHCC
Confidence 999999887653 11 11 245677788888888 8999999988877332 22111 12232 35555777 9
Q ss_pred cHHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC
Q 010739 320 LLADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK---EAD-GDLYDIVLAICASQNE 391 (502)
Q Consensus 320 ~~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~li~~~~~~~~ 391 (502)
++++|.+.|++.... +.+. ...++..+-..|.+.|++++|...+++..+..- .|. ...+..+-..+...++
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999988877662 2222 256788888888889999999999888776422 122 2334444456666666
Q ss_pred ---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 392 ---GSAVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 392 ---~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
+.+|...++. .+..|+ ...+..+-..|...|++++|.+.|++..+
T Consensus 316 ~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555544 332232 33455577888888888888888887653
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.64 E-value=2.2e-06 Score=68.76 Aligned_cols=124 Identities=14% Similarity=0.039 Sum_probs=78.3
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN 390 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~ 390 (502)
+...|.. |++++|.++|+++...... +...|..+...+...|++++|..+++++.... ..+...+..+...+...|
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 4444555 6666666666666554322 23466666666777777777777777766543 224455666666777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 391 EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 391 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
++++|.+.++.+.... ..+...+..+...|.+.|++++|.+.|+++.+
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777776665543 22455666677777777777777777777654
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.62 E-value=1.9e-06 Score=86.54 Aligned_cols=218 Identities=13% Similarity=0.016 Sum_probs=169.0
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccH-HHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHh
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEF-GKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~ 323 (502)
.+.+++++..+++.... -..+...+..+-..+... +++ ++|++.|++..+. .|+ ...+. .+-..|.. |++++
T Consensus 81 ~~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~-g~~~~~A~~~~~~al~~--~p~~~~a~~-~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVT-PDYSPEAEVLLSKAVKL--EPELVEAWN-QLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSS-SSCCHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhh--CCCCHHHHH-HHHHHHHHcCCHHH
Confidence 45678888888875543 233667788888888888 799 9999999998654 343 34444 57777888 99999
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICA---------GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ----- 389 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~----- 389 (502)
|.+.|++....... ...|..+-..|.+. |++++|...|++..+.. .-+...|..+-.++...
T Consensus 156 A~~~~~~al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 156 AHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 99999998877522 36888899999999 99999999999988753 22467778888888888
Q ss_pred ---CChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcccccc
Q 010739 390 ---NEGSAVSRLLSRIEVMNSL--CKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP-EYMDRVAVLQGLRKRIQQS 463 (502)
Q Consensus 390 ---~~~~~a~~l~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~ 463 (502)
|++++|.+.++........ -+...|..+-..|.+.|++++|.+.|++..+.. | +...+..+-..+.. .
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~----l 305 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEF----L 305 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH----H
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH----H
Confidence 8999999999888776421 378888899999999999999999999988754 4 34456666666655 6
Q ss_pred ccHHHHHHHHhhhhhc
Q 010739 464 GNVEAYLNLCKRLSDT 479 (502)
Q Consensus 464 ~~~~~a~~~~~~m~~~ 479 (502)
|+.++|++.+..+...
T Consensus 306 g~~~eAi~~~~~~~~~ 321 (474)
T 4abn_A 306 SRLTSLLESKGKTKPK 321 (474)
T ss_dssp HHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHhccccCc
Confidence 8899999887766443
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.57 E-value=4.2e-06 Score=81.21 Aligned_cols=216 Identities=10% Similarity=-0.059 Sum_probs=131.5
Q ss_pred HHhccccHHHHHHHHHHHHHcC-CCCc----hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC--CC---CchHhHHHHH
Q 010739 279 VVKELNEFGKALRKLKGYVRAG-SIAE----LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG--GS---SLYGVVHERL 347 (502)
Q Consensus 279 ~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~--~~---~~~~~~~~~l 347 (502)
+... |++++|...+++..+.- -.++ ...+. .+-..|.. |+.+.|...+++..... .. .....+++.+
T Consensus 111 ~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~-~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 111 EFDQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHF-KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3445 68888888888774321 1122 12232 35555777 88888888887766532 11 1234577788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 010739 348 LAMYICAGRGLEAERQLWEMKLV----GKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEV----MNSLCKKKTLSWLL 418 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~----~~~~p~~~~~~~li 418 (502)
-..|...|++++|...|++..+. +-.+ ...+++.+-..+...|++++|.+.++.... .+......++..+-
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 88888889999988888876643 1111 123556666788888888888888866544 12222356666788
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHcccccccc---HHHHHHHHhhhhhcCC---chhHHHHH
Q 010739 419 RGYIKGGHINDAAETLTKMLDLGL---YPEYMDRVAVLQGLRKRIQQSGN---VEAYLNLCKRLSDTSL---IGPCLVYL 489 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~~---~~~a~~~~~~m~~~~~---~~~~li~~ 489 (502)
..|.+.|+.++|.+.+++..+..- .|........+...... .++ +.+|+..++....... ....+-..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~---~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE---TVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 888888999999988888776321 23332222233333221 455 7777777765422111 23346667
Q ss_pred HHhhcchhhh
Q 010739 490 YIKKYKLWII 499 (502)
Q Consensus 490 y~~~g~~~~~ 499 (502)
|.+.|+.+.+
T Consensus 346 y~~~g~~~~A 355 (378)
T 3q15_A 346 FESSCHFEQA 355 (378)
T ss_dssp HHHTTCHHHH
T ss_pred HHHCCCHHHH
Confidence 7777776654
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.54 E-value=6.9e-06 Score=65.75 Aligned_cols=129 Identities=13% Similarity=0.064 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI 422 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 422 (502)
.|..+...+...|++++|..+++++.+.. ..+...+..+...+...|++++|.+.++.+...+ ..+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 67788889999999999999999998754 2356778888889999999999999999887765 336777888999999
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739 423 KGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 423 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
..|++++|.+.++++.... ..+...+..+...+.. .|+.++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----HccHHHHHHHHHHHHc
Confidence 9999999999999998754 2356677777788877 7999999999987754
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.52 E-value=0.00056 Score=71.09 Aligned_cols=130 Identities=11% Similarity=-0.005 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhcc---HhhHHHHHHHHhhCC-C
Q 010739 112 SARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERG---VGDVVDLLVDMDCVG-L 187 (502)
Q Consensus 112 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~---~~~a~~~~~~m~~~g-~ 187 (502)
+.+.|..++..+.+.+.. +.+..+|+.+...-......|...+..-. +.++ ++.+..+|+.-.... .
T Consensus 65 d~~~W~~yi~~~~~~~~~-~~aR~vyEraL~~fP~~~~lW~~Yi~~E~--------~~~~~~~~~~v~~lfeRal~~~~~ 135 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQW-KQVYETFDKLHDRFPLMANIWCMRLSLEF--------DKMEELDAAVIEPVLARCLSKELG 135 (679)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------TC--CCCHHHHHHHHHHHTCSSSC
T ss_pred CHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------hhCCcchHHHHHHHHHHHHHhcCC
Confidence 345699999999999999 89999999999887457777877776444 6677 999999999988764 2
Q ss_pred CCCHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHH-cCC-CCCCccccccCCCCchHHHHHHHH-----------
Q 010739 188 KPGFSMIEKVISLYWEMEKK--------ERAVLFVKAVLS-RGI-AYAEGDGEGQQGGPTGYLAWKMMV----------- 246 (502)
Q Consensus 188 ~p~~~~y~~li~~~~~~g~~--------~~A~~l~~~m~~-~~~-~p~~~ty~~~~~~~~~~~~~~~~~----------- 246 (502)
.|++..|...+....+.++. +.+.++|+...+ .|. .|+. .-+|....
T Consensus 136 ~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s------------~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 136 NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS------------IQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSC------------HHHHHHHHHHHHTCCCCSH
T ss_pred CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccc------------hHHHHHHHHHHHhccccCc
Confidence 48888999888877776653 345578876553 454 4432 13444332
Q ss_pred ---hCcHHHHHHHHHHHHH
Q 010739 247 ---EGKYVDAIKLVIHLRE 262 (502)
Q Consensus 247 ---~g~~~~a~~~~~~m~~ 262 (502)
+++++.+.++|++...
T Consensus 204 ~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 2456778888887764
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.51 E-value=6.6e-06 Score=86.47 Aligned_cols=162 Identities=10% Similarity=-0.051 Sum_probs=126.9
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER 346 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 346 (502)
..+|+.+-..+.+. |++++|++.|++.++. .|+. ..++ .+-..|.+ |++++|.+.|++..+..... ...|+.
T Consensus 9 a~al~nLG~~~~~~-G~~~eAi~~~~kAl~l--~P~~~~a~~-nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~n 82 (723)
T 4gyw_A 9 ADSLNNLANIKREQ-GNIEEAVRLYRKALEV--FPEFAAAHS-NLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 46788888888888 7899999988887554 3443 3333 46677888 99999999998887765433 458888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
+-..|.+.|++++|++.|++..+. .| +...|+.+-..+...|++++|.+.++...+.. .-+...|..+...|...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcc
Confidence 999999999999999999988764 45 45678888889999999999999998877665 225778888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 010739 426 HINDAAETLTKMLD 439 (502)
Q Consensus 426 ~~~~A~~l~~~m~~ 439 (502)
++++|.+.+++..+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99988888887654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.45 E-value=1.8e-05 Score=73.85 Aligned_cols=210 Identities=12% Similarity=-0.072 Sum_probs=145.7
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCCCc-hhchHHHHHHHHhc-CcHH
Q 010739 249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR----AGSIAE-LDGKNLGLIEKYQS-DLLA 322 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~~li~~~~~-g~~~ 322 (502)
++++|.+.|++. ...|... |++++|...+.+..+ .|-.++ ..+|+ .+-..|.+ |+++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~-~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLR-KELNLAGDSFLKAADYQKKAGNEDEAGNTYV-EAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHT-TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHCCCHH
Confidence 588888888876 3346667 789999988876632 232222 33444 46677888 9999
Q ss_pred hHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHc-CChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCCh
Q 010739 323 DGSRLSSWAIQEG----GSSLYGVVHERLLAMYICA-GRGLEAERQLWEMKLVG----KEAD-GDLYDIVLAICASQNEG 392 (502)
Q Consensus 323 ~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g----~~p~-~~t~~~li~~~~~~~~~ 392 (502)
+|...|++..... .+.....+|+.+-..|... |++++|+..|++..+.. -.+. ..+++.+-..+...|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999998776543 2111245788888999996 99999999999876531 1111 35677888999999999
Q ss_pred hHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccc
Q 010739 393 SAVSRLLSRIEVMNSLCKK------KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY------MDRVAVLQGLRKRI 460 (502)
Q Consensus 393 ~~a~~l~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~~ 460 (502)
++|...++........... ..|..+..+|...|++++|...|++..+. .|+. ..+..+..++..
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~-- 250 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNE-- 250 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHc--
Confidence 9999999888776533222 15666788899999999999999997653 3332 134445555541
Q ss_pred cccccHHHHHHHHhhhhhc
Q 010739 461 QQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 461 ~~~~~~~~a~~~~~~m~~~ 479 (502)
...+++++|+..++.+...
T Consensus 251 ~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TCTTTHHHHHHHHTTSSCC
T ss_pred CCHHHHHHHHHHhccCCcc
Confidence 1257799999998776543
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.43 E-value=6.6e-06 Score=86.45 Aligned_cols=162 Identities=11% Similarity=0.018 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
+..+|+.|-..|.+.|++++|.+.|++..+.. |+. ..|.. +...+...|++++|++.|++..+. .|+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~n--------Lg~~l~~~g~~~eA~~~~~~Al~l--~P~ 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSN--------LASVLQQQGKLQEALMHYKEAIRI--SPT 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 35789999999999999999999999888764 442 22222 445555679999999999988765 454
Q ss_pred -HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739 269 -VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE 345 (502)
Q Consensus 269 -~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (502)
...|..+-.++.+. |++++|++.+++..+. .|+. ..++ .+-..|.+ |++++|.+.|++..+..... ...|.
T Consensus 76 ~~~a~~nLg~~l~~~-g~~~~A~~~~~kAl~l--~P~~~~a~~-~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~ 149 (723)
T 4gyw_A 76 FADAYSNMGNTLKEM-QDVQGALQCYTRAIQI--NPAFADAHS-NLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYC 149 (723)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHH
T ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHh
Confidence 67888888899999 7999999999888554 3443 3444 47777888 99999999999888765443 45888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
.+...|.+.|++++|.+.+++..+
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999888887653
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.43 E-value=0.00063 Score=70.72 Aligned_cols=372 Identities=10% Similarity=-0.021 Sum_probs=191.5
Q ss_pred ChhhHHHHHHHHHHcCC---ChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhh-hhccHhhHHHHHHHHh-h
Q 010739 112 SARELQLVLVYFSQEGR---DSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIE-EERGVGDVVDLLVDMD-C 184 (502)
Q Consensus 112 ~~~~~~~ll~~~~~~~~---~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~-~~~~~~~a~~~~~~m~-~ 184 (502)
+...|..-+..-.+.+. . +.+.++|+...... .|++..|...+.... ....... ..+..+.+.++|+... .
T Consensus 99 ~~~lW~~Yi~~E~~~~~~~~~-~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~-~~~~~~~~~~~~r~~vr~~FErAl~~ 176 (679)
T 4e6h_A 99 MANIWCMRLSLEFDKMEELDA-AVIEPVLARCLSKELGNNDLSLWLSYITYVR-KKNDIITGGEEARNIVIQAFQVVVDK 176 (679)
T ss_dssp CHHHHHHHHHHHHTC--CCCH-HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHH-HHSCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHH
Confidence 34457778888888888 8 79999999998766 488889988877333 1110000 0112244556777544 3
Q ss_pred CCC-CCC-HHHHHHHHHHHHh---------cCcHHHHHHHHHHHHHcCCCCCC---ccccc----cCCCCchHHHHHHH-
Q 010739 185 VGL-KPG-FSMIEKVISLYWE---------MEKKERAVLFVKAVLSRGIAYAE---GDGEG----QQGGPTGYLAWKMM- 245 (502)
Q Consensus 185 ~g~-~p~-~~~y~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~p~~---~ty~~----~~~~~~~~~~~~~~- 245 (502)
.|. .|+ ...|...+....+ .++++.+.++|+..... |.. .+|.. +.+. ........+
T Consensus 177 vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~ 252 (679)
T 4e6h_A 177 CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDV-NQLTARRHIG 252 (679)
T ss_dssp TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHH-CTTTHHHHHH
T ss_pred hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhc-CcchHHHHHH
Confidence 466 554 5688888876543 45678899999888742 221 11110 0000 000000000
Q ss_pred -HhCcHHHHHHHHHHHHHc--CCC---CC--------------------HhHHHHHHHHHHhccc------cHHHHHHHH
Q 010739 246 -VEGKYVDAIKLVIHLRES--GLK---PE--------------------VYSYLIALTAVVKELN------EFGKALRKL 293 (502)
Q Consensus 246 -~~g~~~~a~~~~~~m~~~--g~~---p~--------------------~~ty~~li~~~~~~~~------~~~~a~~~~ 293 (502)
...+++.|...+.++... ++. |. ...|...+.---..+. ....+..+|
T Consensus 253 e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 253 ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 113445555556554432 221 11 0122222222111110 122344456
Q ss_pred HHHH-HcCCCCchhchHHHHHHHHhc-CcHHhHH-HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010739 294 KGYV-RAGSIAELDGKNLGLIEKYQS-DLLADGS-RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV 370 (502)
Q Consensus 294 ~~m~-~~g~~p~~~~~~~~li~~~~~-g~~~~a~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (502)
++.+ ..+.. ...| ......+.. |+.++|. ++|++.... +|. +...|-..+...-+.|++++|..+|+++.+.
T Consensus 333 e~aL~~~p~~--~~lW-~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 333 MQAAQHVCFA--PEIW-FNMANYQGEKNTDSTVITKYLKLGQQC-IPN-SAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHTTTC--HHHH-HHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--HHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5553 22222 2222 123444445 7777775 777776643 332 3345666666667778888888888777653
Q ss_pred C---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh-CCCH
Q 010739 371 G---------KEAD------------GDLYDIVLAICASQNEGSAVSRLLSRIEVM-NSLCKKKTLSWLLRGYIK-GGHI 427 (502)
Q Consensus 371 g---------~~p~------------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~~~-~g~~ 427 (502)
. -.|+ ...|...+....+.|.++.|..+|+..... +. +....|-..+..-.+ .++.
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCH
Confidence 1 0132 234666666666777778888888766554 21 122223222222222 2447
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC-------chhHHHHHHHhhcchhhhh
Q 010739 428 NDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL-------IGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 428 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~li~~y~~~g~~~~~~ 500 (502)
+.|.++|+..++. +.-+...+...++-... .|+.+.|..+|+....... +....+..-.+.|+++.++
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888777664 22233334444444444 5677777777776644321 3334444455556665543
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.38 E-value=4e-05 Score=68.22 Aligned_cols=181 Identities=9% Similarity=-0.029 Sum_probs=95.0
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHH
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLA 322 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~ 322 (502)
...|++++|++.|++.....-.++...+..+-.++.+. +++++|++.+++..+. .|+. ..+. .+-..|.. |+++
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~-~l~~~~~~~~~~~ 93 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKK--NYNLANAYI-GKSAAYRDMKNNQ 93 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT--TCSHHHHHH-HHHHHHHHTTCHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHh--CcchHHHHH-HHHHHHHHcccHH
Confidence 34577777777777766654335555555566666666 6677777766666443 2332 2222 34455666 7777
Q ss_pred hHHHHHHHHHHcCCCCchH-----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhH
Q 010739 323 DGSRLSSWAIQEGGSSLYG-----VVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD---GDLYDIVLAICASQNEGSA 394 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~ 394 (502)
+|.+.|++........... ..|..+-..+.+.|++++|...|++..+ ..|+ ...|..+-..+.. .
T Consensus 94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~-----~ 166 (228)
T 4i17_A 94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYN-----N 166 (228)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHH-----H
Confidence 7777776666554333211 2455555666666777777777766654 2444 2233333333322 2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
+..+++.+...+ ..+...|..... ...+.+++|...|++..+
T Consensus 167 ~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 167 GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 233334443333 112333333222 233456666666666554
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.37 E-value=2.9e-05 Score=71.93 Aligned_cols=145 Identities=12% Similarity=-0.017 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHH
Q 010739 253 AIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWA 331 (502)
Q Consensus 253 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m 331 (502)
|+..|++....+ .++..++..+-.++... |+.++|++++++-+..+-.++..-....++..|.+ |+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAIL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555554443 34444444555555555 56666666665543333211111111134444555 5555555555555
Q ss_pred HHcCC---CCchHhHHHHHHHHHHH--cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 332 IQEGG---SSLYGVVHERLLAMYIC--AG--RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 332 ~~~~~---~~~~~~~~~~li~~~~~--~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
..... ...| .+...+..++.. .| +.++|+.+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~~~d~~~~~d-~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNAIEDTVSGDN-EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHSCHHHHHHH-HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhcCccccccch-HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44311 0001 233333333222 22 555555555555432 233222233333455555555555555543
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.36 E-value=1.7e-05 Score=70.65 Aligned_cols=195 Identities=9% Similarity=-0.070 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCC-C
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKP-E 268 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~ 268 (502)
|...|...-..|.+.|++++|...|++..+..-.++...+.. +...+...|++++|++.|++.... .| +
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~~~~~~~~A~~~~~~al~~--~p~~ 75 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYN--------CGVCADNIKKYKEAADYFDIAIKK--NYNL 75 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHT--TCSH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHH--------HHHHHHHhhcHHHHHHHHHHHHHh--Ccch
Confidence 556777777888888888888888888877653233333322 444555568888888888887754 34 3
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh--------chHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCc
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD--------GKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSL 339 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--------~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~ 339 (502)
...|..+-..+.+. |++++|...+++..+.. |+.. .|. .+-..+.. |++++|.+.|++.........
T Consensus 76 ~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~-~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 151 (228)
T 4i17_A 76 ANAYIGKSAAYRDM-KNNQEYIATLTEGIKAV--PGNATIEKLYAIYYL-KEGQKFQQAGNIEKAEENYKHATDVTSKKW 151 (228)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHH-HHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 46677777778888 78888888888775432 3322 222 34444666 888888888887766532200
Q ss_pred hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
+...|..+-..|...|+ .+++++...+ ..+...|..... ...+.+++|...++...+..
T Consensus 152 ~~~~~~~l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 152 KTDALYSLGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 34467666666655443 3344444332 223444444432 22355777888887776654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.29 E-value=2.5e-05 Score=72.39 Aligned_cols=198 Identities=9% Similarity=-0.093 Sum_probs=133.2
Q ss_pred HHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010739 289 ALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEM 367 (502)
Q Consensus 289 a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 367 (502)
++..|++....+ .++..... .+-..+.. |+.++|++++.+.+..+....+...+-.++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~-~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELY-LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666665444 33433332 45566777 9999999999887666543456678999999999999999999999999
Q ss_pred HHCCCCC-----CHHHHHHHHHH--HHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 368 KLVGKEA-----DGDLYDIVLAI--CAS--QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 368 ~~~g~~p-----~~~t~~~li~~--~~~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
.+. .| +..+...+..+ ... .++...|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 864 56 35666666655 222 33899999999998654 3554444455668999999999999999766
Q ss_pred HC-----CC---CC-CHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhh
Q 010739 439 DL-----GL---YP-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWI 498 (502)
Q Consensus 439 ~~-----g~---~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~ 498 (502)
+. .- .| |..++..+|..... .|+ ++.+++.++.....-.|.+.+.-.+.-.++.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~----lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~ 301 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALM----QGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDE 301 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHH----TTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHH----hCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 53 11 24 44555344333322 244 6778888887766345555555555544544
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.28 E-value=5.1e-05 Score=71.25 Aligned_cols=216 Identities=11% Similarity=0.008 Sum_probs=143.3
Q ss_pred HhCcHHHHHHHHHHHHHc------CCCCCH----hHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCCCc-hhchHH
Q 010739 246 VEGKYVDAIKLVIHLRES------GLKPEV----YSYLIALTAVVKELNEFGKALRKLKGYVR----AGSIAE-LDGKNL 310 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~------g~~p~~----~ty~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ 310 (502)
..|++++|.+++++-.+. ++.++. ..|+.....|... +++++|...+.+..+ .|-.+. ...|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~- 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNA-KQLEQAKDAYLQEAEAHANNRSLFHAAKAFE- 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 357788888888866542 123442 3566667778888 799999998887632 221111 22343
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV----GKEA-DGDLYD 380 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~ 380 (502)
.+...|.+ |++++|...|++..... .+.....+|+.+-..|.+ |++++|+..|++..+. |-.+ ...+++
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 159 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIG 159 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 46666888 99999999998766542 222224578888888888 9999999999987643 1111 145677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 010739 381 IVLAICASQNEGSAVSRLLSRIEVM----NSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE------YMDR 449 (502)
Q Consensus 381 ~li~~~~~~~~~~~a~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~ 449 (502)
.+-..+...|++++|.+.++..... +..++ ...+..+...+...|++++|...|++.. . .|+ ....
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l 236 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAAL 236 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHH
Confidence 7888999999999999999766543 21111 2255556777778899999999999987 3 332 1234
Q ss_pred HHHHHHHHccccccccHHHHHHH
Q 010739 450 VAVLQGLRKRIQQSGNVEAYLNL 472 (502)
Q Consensus 450 ~~ll~~~~~~~~~~~~~~~a~~~ 472 (502)
..++.++. .|+.+.+..+
T Consensus 237 ~~l~~~~~-----~~d~~~~~~~ 254 (307)
T 2ifu_A 237 EDLLQAYD-----EQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHH-----TTCHHHHHHH
T ss_pred HHHHHHHH-----hcCHHHHHHH
Confidence 45555553 4666666553
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.17 E-value=8e-05 Score=69.30 Aligned_cols=174 Identities=10% Similarity=-0.044 Sum_probs=126.8
Q ss_pred cHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHH
Q 010739 285 EFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLE 359 (502)
Q Consensus 285 ~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~ 359 (502)
++++|...+++. ...|.. |++++|.+.|.+.... +.+.....+|+.+-..|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 588888877664 334666 9999999999877654 2222235689999999999999999
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhCCCHH
Q 010739 360 AERQLWEMKLV----GKEA-DGDLYDIVLAICASQ-NEGSAVSRLLSRIEVMNSL-CK----KKTLSWLLRGYIKGGHIN 428 (502)
Q Consensus 360 A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~-~~~~~a~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~ 428 (502)
|...|++..+. |-.. -..+++.+-..+... |++++|.+.++........ .+ ..++..+...|.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999987653 2111 134677777889986 9999999999766543211 11 346778899999999999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739 429 DAAETLTKMLDLGLYPEY------MDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 429 ~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
+|.+.|++..+....... ..|..+-..+.. .|+.++|...+++...
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 999999999886533222 134555555555 6999999999988754
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.13 E-value=0.00014 Score=66.15 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC----ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739 190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL 265 (502)
Q Consensus 190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 265 (502)
+...+-.+-..+.+.|++++|...|++..+.. |+. ..+.. +...+...|++++|+..|++.....-
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------lg~~~~~~~~~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFY--------LARAYYQNKEYLLAASEYERFIQIYQ 83 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHH--------HHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence 44556666667777788888888887776654 221 11111 34445556788888888887776521
Q ss_pred -CCC-HhHHHHHHHHHHh--------ccccHHHHHHHHHHHHHc
Q 010739 266 -KPE-VYSYLIALTAVVK--------ELNEFGKALRKLKGYVRA 299 (502)
Q Consensus 266 -~p~-~~ty~~li~~~~~--------~~~~~~~a~~~~~~m~~~ 299 (502)
.|. ...+..+-.++.+ . |++++|...|++..+.
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDR 126 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHH
Confidence 112 3445555556666 6 6788888888777443
No 95
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.12 E-value=6.3e-05 Score=70.58 Aligned_cols=228 Identities=8% Similarity=-0.044 Sum_probs=137.6
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE-MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV 246 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~ 246 (502)
..|++++|..++++..+..- .. +.+ .+++++|...|++. ...+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a-----------------------~~~~~~ 48 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA-----------------------AVAFKN 48 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH-----------------------HHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH-----------------------HHHHHH
Confidence 45788888888887655311 11 112 46677777776654 222334
Q ss_pred hCcHHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCc-hhchHHHHHHHH
Q 010739 247 EGKYVDAIKLVIHLRES----GLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAE-LDGKNLGLIEKY 316 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~----g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~~li~~~ 316 (502)
.|++++|.+.|.+.... |-.+. ..+|+.+...|.+. +++++|+..+++-.+. |-... ..+++ .+-..|
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~-~lg~~~ 126 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-QRMPEAVQYIEKASVMYVENGTPDTAAMALD-RAGKLM 126 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHH
Confidence 57777777777665443 11111 34677777778777 6888888877765322 21111 12222 244445
Q ss_pred hcCcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHH
Q 010739 317 QSDLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV----GKEADG-DLYDIVLAICA 387 (502)
Q Consensus 317 ~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~li~~~~ 387 (502)
..|++++|.+.|++..... .+.....+|+.+-..|.+.|++++|...|++..+. +..+.. ..+..+...+.
T Consensus 127 ~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 127 EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 4489999999887766532 11112357888889999999999999999987753 222222 25555566777
Q ss_pred hcCChhHHHHHHHHHHHcCC-CCCH---HHHHHHHHHHHhCCCHHHHHHH
Q 010739 388 SQNEGSAVSRLLSRIEVMNS-LCKK---KTLSWLLRGYIKGGHINDAAET 433 (502)
Q Consensus 388 ~~~~~~~a~~l~~~m~~~~~-~p~~---~~~~~li~~~~~~g~~~~A~~l 433 (502)
..|++++|...++... ... .++. .....++.+| ..|+.+.+.++
T Consensus 207 ~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 7799999999998876 321 1111 1233355555 56777766653
No 96
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.11 E-value=0.00026 Score=65.75 Aligned_cols=162 Identities=6% Similarity=-0.108 Sum_probs=102.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHc-CCCCchh---chHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCch----HhHHHH
Q 010739 276 LTAVVKELNEFGKALRKLKGYVRA-GSIAELD---GKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLY----GVVHER 346 (502)
Q Consensus 276 i~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~---~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~----~~~~~~ 346 (502)
+..+.+. +++++|.+.+++..+. ...|+.. .|...+...|.. |++++|...|++.........+ ..+|+.
T Consensus 82 i~~~~~~-~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHH-hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 5556666 6788888887777442 2223321 111123444555 7888888888877764332222 236788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHH
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLV-----GKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEV----MNSLCK-KKTLS 415 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~----~~~~p~-~~~~~ 415 (502)
+-..|...|++++|...|++..+. +..+. ..+|..+-..|...|++++|.+.++.... .+..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887631 22222 23566666788888888888887754432 222222 55677
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHH
Q 010739 416 WLLRGYIKGGH-INDAAETLTKML 438 (502)
Q Consensus 416 ~li~~~~~~g~-~~~A~~l~~~m~ 438 (502)
.+-..|.+.|+ .++|.+.|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 77778888884 588888777754
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.08 E-value=0.00051 Score=60.95 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 010739 348 LAMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGSAVSRLLSRIEVM 405 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~ 405 (502)
-..|.+.|++++|...|+++.+. .|+. ..+..+..++.+.|+.++|.+.++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 33445555555555555555543 1221 23444445555555555555555554443
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.08 E-value=0.00043 Score=64.24 Aligned_cols=208 Identities=8% Similarity=-0.097 Sum_probs=132.6
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHH--HHHHHHhc-CcHHhHHHHHHHH
Q 010739 255 KLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNL--GLIEKYQS-DLLADGSRLSSWA 331 (502)
Q Consensus 255 ~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--~li~~~~~-g~~~~a~~~~~~m 331 (502)
..+..+......|+..+...+...+.-. ++. +.......+...... ..+..+.. |++++|.+++++.
T Consensus 32 ~~~s~~e~g~~~~~~~~l~~i~~~l~~~---~~~-------~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 32 SEVSRIESGAVYPSMDILQGIAAKLQIP---IIH-------FYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHTCC---THH-------HHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCcC---HHH-------HhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455555555678877776666665444 222 111111222222211 12444556 9999999999998
Q ss_pred HHcCCCCchH----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 332 IQEGGSSLYG----VVHERLLAMYICAGRGLEAERQLWEMKLVGKE-AD----GDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 332 ~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
.......++. ..+..+...+...|++++|...|++..+.... ++ ..+|+.+-..|...|+++.|.+.++..
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7755433332 13334666666678999999999999874322 23 336888888999999999999999766
Q ss_pred HH----c-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccccccc-cHHHHH
Q 010739 403 EV----M-NSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD----LGLYPE-YMDRVAVLQGLRKRIQQSG-NVEAYL 470 (502)
Q Consensus 403 ~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~~~~~~~~~~~-~~~~a~ 470 (502)
.. . +..+. ..+|..+...|.+.|++++|.+.+++.++ .+-.+. ..+|..+-..+.+ .| ..++|.
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~~A~ 257 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIE 257 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH----TTCCHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----hCCcHHHHH
Confidence 53 2 22222 33677799999999999999999998764 333333 4556666556655 45 457777
Q ss_pred HHHhhh
Q 010739 471 NLCKRL 476 (502)
Q Consensus 471 ~~~~~m 476 (502)
..+++.
T Consensus 258 ~~~~~A 263 (293)
T 3u3w_A 258 DAYKKA 263 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.06 E-value=0.00042 Score=62.97 Aligned_cols=167 Identities=11% Similarity=-0.030 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCC-CCchHhHHH
Q 010739 270 YSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGG-SSLYGVVHE 345 (502)
Q Consensus 270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~-~~~~~~~~~ 345 (502)
..+-..-..+.+. |++++|...|++..+.. -.|. ...+. .+-..|.+ |++++|...|++...... .+.....+.
T Consensus 16 ~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~-~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQ-GKYDRAIEYFKAVFTYGRTHEWAADAQF-YLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHGGGCSCSTTHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCCcchHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444444555555 56777777776664332 1111 11221 24444555 777777777776666542 122234555
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChhHHHHHH
Q 010739 346 RLLAMYIC--------AGRGLEAERQLWEMKLVGKEADG-DLY-----------------DIVLAICASQNEGSAVSRLL 399 (502)
Q Consensus 346 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~-----------------~~li~~~~~~~~~~~a~~l~ 399 (502)
.+-.++.+ .|++++|...|++..+.. |+. ... ..+-..+...|++++|...+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 56666666 777777777777776542 321 111 22234556666666666666
Q ss_pred HHHHHcCCC-C-CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHC
Q 010739 400 SRIEVMNSL-C-KKKTLSWLLRGYIKG----------GHINDAAETLTKMLDL 440 (502)
Q Consensus 400 ~~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~ 440 (502)
+........ + ....+..+..+|... |++++|...|++..+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 655443211 1 123444455555544 6666666666666553
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.02 E-value=0.00082 Score=59.60 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHhCcHHHHHHHHHHHHHcCC-CCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 010739 243 KMMVEGKYVDAIKLVIHLRESGL-KPE-VYSYLIALTAVVKELNEFGKALRKLKGYVR 298 (502)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~ 298 (502)
.+...|++++|++.|+++....- .|. ...+..+..++.+. |++++|+..|++..+
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIR 69 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 34446777777777777765421 111 23555566666666 677777777777643
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.99 E-value=0.00047 Score=60.41 Aligned_cols=129 Identities=15% Similarity=0.053 Sum_probs=84.1
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQ 389 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~ 389 (502)
+-..|.+ |++++|...|++........ ...|..+-..|...|++++|...|++..+. .|+ ...|..+-..+...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNN--VDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 5555777 89999999888877765433 458888888899999999999999988764 453 45566555555544
Q ss_pred CCh--hHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010739 390 NEG--SAVSRLLSRIEVMNSLCKKKTL--SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRV 450 (502)
Q Consensus 390 ~~~--~~a~~l~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 450 (502)
|.. ..+...++.. ..|+...+ ...-.++...|++++|...|++.++ +.|+.....
T Consensus 136 ~~~~~~~~~~~~~~~----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 136 AEQEKKKLETDYKKL----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred hHHHHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 432 2333333332 23443333 3344455667899999999998775 457765433
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.98 E-value=0.00026 Score=74.36 Aligned_cols=189 Identities=11% Similarity=-0.042 Sum_probs=137.1
Q ss_pred HhccccHHHHHHHHHHHHH------cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHH
Q 010739 280 VKELNEFGKALRKLKGYVR------AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYI 352 (502)
Q Consensus 280 ~~~~~~~~~a~~~~~~m~~------~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~ 352 (502)
... +++++|++.+++... ....|+.......+-..|.. |++++|.+.|++........ ...|..+-..|.
T Consensus 402 ~~~-~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVL-SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--WRLVWYRAVAEL 478 (681)
T ss_dssp TTT-CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
T ss_pred ccc-cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--HHHHHHHHHHHH
Confidence 445 789999999988761 12345443322245566777 99999999999988765444 458888999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739 353 CAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAA 431 (502)
Q Consensus 353 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 431 (502)
+.|++++|...|++..+. .| +...|..+-.++...|++++ .+.++.....+ .-+...|..+-..|.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998864 34 45677777789999999999 99998887765 236778888999999999999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHccc--cc--cccHHHHHHHHhhhh
Q 010739 432 ETLTKMLDLGLYPEY-MDRVAVLQGLRKRI--QQ--SGNVEAYLNLCKRLS 477 (502)
Q Consensus 432 ~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~--~~--~~~~~~a~~~~~~m~ 477 (502)
+.|++..+ +.|+. ..+..+..++...- .. .+++++|.+.+..+.
T Consensus 555 ~~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 555 RTLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99998654 45664 34555555543300 00 145777777776664
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.98 E-value=9.3e-05 Score=68.70 Aligned_cols=164 Identities=9% Similarity=0.016 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC
Q 010739 188 KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK 266 (502)
Q Consensus 188 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~ 266 (502)
+.+...+..+-..+.+.|++++|...|++..+.. |+.. .+.. +...+...|++++|...+++.... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~--------la~~~~~~g~~~~A~~~l~~~~~~--~ 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLL--------LAETLIALNRSEDAEAVLXTIPLQ--D 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHH--------HHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHH--------HHHHHHHCCCHHHHHHHHHhCchh--h
Confidence 3445566677777788888888888888877654 3211 1111 333444467777777777665443 3
Q ss_pred CCHhHHHHHHH-HHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739 267 PEVYSYLIALT-AVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH 344 (502)
Q Consensus 267 p~~~ty~~li~-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~ 344 (502)
|+......... .+.+. ++.++|...+++.... .|+.......+-..|.. |++++|...|.++........+...+
T Consensus 182 p~~~~~~~~~~~~l~~~-~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQ-AADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp CSHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred cchHHHHHHHHHHHHhh-cccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 44332222111 23333 3455555555555332 23322221234455555 66666666666655554333233456
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 010739 345 ERLLAMYICAGRGLEAERQLWE 366 (502)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~ 366 (502)
..+...|...|+.++|...|++
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHH
Confidence 6666666666666666655554
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.97 E-value=0.00018 Score=73.79 Aligned_cols=151 Identities=9% Similarity=-0.060 Sum_probs=99.7
Q ss_pred hCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHh
Q 010739 247 EGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~ 323 (502)
.|++++|++.|++..+. .|+ ...|..+-..+.+. |++++|.+.+++..+. .|+. ..+. .+-..|.. |++++
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~-~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLAL--HPGHPEAVA-RLGRVRWTQQRHAE 75 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTT--STTCHHHHH-HHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHCCCHHH
Confidence 47888999999887654 443 67778888888888 7899999988887554 3433 3333 46666777 99999
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHH
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ---NEGSAVSRLLS 400 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---~~~~~a~~l~~ 400 (502)
|.+.|++....... +...|..+-..|.+.|++++|.+.|++..+.. .-+...+..+...+... |+.++|.+.++
T Consensus 76 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 76 AAVLLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 99999888776533 34588888888999999999999999887653 22456777777888888 88889988888
Q ss_pred HHHHcC
Q 010739 401 RIEVMN 406 (502)
Q Consensus 401 ~m~~~~ 406 (502)
.....+
T Consensus 153 ~al~~~ 158 (568)
T 2vsy_A 153 AAVAQG 158 (568)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 777665
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.97 E-value=8.5e-05 Score=63.23 Aligned_cols=156 Identities=15% Similarity=0.026 Sum_probs=97.2
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI-CASQ 389 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~ 389 (502)
+...+.. |++++|...|++...... .+...|..+-..+.+.|++++|...|++.... .|+...+...... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3344555 888888887766544332 23347777888888888888888888876543 3333322221111 1222
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccccccccHHH
Q 010739 390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP-EYMDRVAVLQGLRKRIQQSGNVEA 468 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~ 468 (502)
+....+.+.++...... .-+...+..+-..+...|++++|...|++..+..-.+ +...+..+...+.. .|+.++
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCc
Confidence 23334566666665543 2256777778888888888888888888887765332 34566666666665 577777
Q ss_pred HHHHHhhh
Q 010739 469 YLNLCKRL 476 (502)
Q Consensus 469 a~~~~~~m 476 (502)
|...++..
T Consensus 163 A~~~y~~a 170 (176)
T 2r5s_A 163 IASKYRRQ 170 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.96 E-value=0.00025 Score=65.79 Aligned_cols=151 Identities=19% Similarity=0.082 Sum_probs=81.4
Q ss_pred Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChh
Q 010739 316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL-AICASQNEGS 393 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~ 393 (502)
+.. |++++|...|++......... ..+..+...|.+.|++++|...+++.... .|+........ ..+...++.+
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 444 666666666655554433332 35666666666666666666666655432 34433222222 2344555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccccccccHHHHHHH
Q 010739 394 AVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY-PEYMDRVAVLQGLRKRIQQSGNVEAYLNL 472 (502)
Q Consensus 394 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~~a~~~ 472 (502)
.|.+.++...... ..+...+..+-..|...|++++|...|++.....-. .+...+..+...+.. .|+.++|...
T Consensus 203 ~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~a~~~ 277 (287)
T 3qou_A 203 PEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA----LGTGDALASX 277 (287)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred ccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH----cCCCCcHHHH
Confidence 5666665555443 224556666666666777777777777766654321 123455555555544 4555555555
Q ss_pred Hhh
Q 010739 473 CKR 475 (502)
Q Consensus 473 ~~~ 475 (502)
+++
T Consensus 278 ~r~ 280 (287)
T 3qou_A 278 YRR 280 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.96 E-value=0.00022 Score=73.20 Aligned_cols=151 Identities=11% Similarity=-0.027 Sum_probs=106.4
Q ss_pred ccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHH
Q 010739 284 NEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAE 361 (502)
Q Consensus 284 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (502)
++.++|.+.+++..+. .|+ ...+. .+-..|.. |++++|.+.|++....... +...|..+-..|.+.|++++|.
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWL-MLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHH
Confidence 5788998888877443 344 33333 46666777 9999999999988776533 3458888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHH
Q 010739 362 RQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG---GHINDAAETLTKML 438 (502)
Q Consensus 362 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~ 438 (502)
..|++..+.. .-+...+..+-.++...|++++|.+.++...... ..+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999988653 2246778888889999999999999998887765 23577788889999999 99999999999988
Q ss_pred HCC
Q 010739 439 DLG 441 (502)
Q Consensus 439 ~~g 441 (502)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.92 E-value=0.00075 Score=59.31 Aligned_cols=176 Identities=15% Similarity=0.048 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcC----cHHhHHHH
Q 010739 252 DAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSD----LLADGSRL 327 (502)
Q Consensus 252 ~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g----~~~~a~~~ 327 (502)
+|++.|++..+.| +...+..+-..+... ++.++|++.|++..+.|. ...+. .|-..|..+ +.++|.+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~g~---~~a~~-~lg~~y~~~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQGD---GDALA-LLAQLKIRNPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTC---HHHHH-HHHHHTTSSTTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCC---HHHHH-HHHHHHHcCCCCCCHHHHHHH
Confidence 3445555554442 344445555555555 566666666666655442 12221 233333333 56666666
Q ss_pred HHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhHHHHH
Q 010739 328 SSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKE-ADGDLYDIVLAICAS----QNEGSAVSRL 398 (502)
Q Consensus 328 ~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~----~~~~~~a~~l 398 (502)
|++..+.+.+ ..+..|-..|.. .+++++|+..|++..+.|.. -+...+..|-..|.. .++.++|.+.
T Consensus 76 ~~~A~~~g~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEAGSK----SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHTTCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHCCCH----HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 6655544322 244444444444 55566666666655544321 013334444444444 4455555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHCC
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKG-G-----HINDAAETLTKMLDLG 441 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g 441 (502)
++.....+ .+...+..|-..|... | +.++|.+.|++..+.|
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55544431 1222333444444332 1 5555555555554444
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.92 E-value=0.00019 Score=75.40 Aligned_cols=171 Identities=12% Similarity=-0.052 Sum_probs=129.0
Q ss_pred HHhCcHHHHHHHHHHHHH------cCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHH
Q 010739 245 MVEGKYVDAIKLVIHLRE------SGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKY 316 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~------~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~ 316 (502)
...|++++|++.|++... ....| +...+..+-.++.+. |++++|.+.+++..+. .|+ ...+. .+-..|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~--~p~~~~a~~-~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL-GDVAKATRKLDDLAER--VGWRWRLVW-YRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--HCCCHHHHH-HHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHhcc--CcchHHHHH-HHHHHH
Confidence 456999999999999871 12334 456778888888899 8999999999998554 233 33333 455667
Q ss_pred hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhH
Q 010739 317 QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSA 394 (502)
Q Consensus 317 ~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~ 394 (502)
.. |++++|.+.|++.........+ .|..+-..|.+.|++++ ...|++..+. .| +...|..+-.++...|++++
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~--~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELA--PKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSH--HHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHH
Confidence 77 9999999999998887655544 88999999999999999 9999998864 34 45678888899999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC
Q 010739 395 VSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGH 426 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 426 (502)
|.+.++.....+ |+ ...+..+..++...|+
T Consensus 553 A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 999998776554 54 5566667777666554
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.91 E-value=0.00072 Score=62.70 Aligned_cols=165 Identities=5% Similarity=-0.115 Sum_probs=106.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCC-Cch----hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCC----chH
Q 010739 272 YLIALTAVVKELNEFGKALRKLKGYVRAGSI-AEL----DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSS----LYG 341 (502)
Q Consensus 272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~----~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~----~~~ 341 (502)
+...+..+... +++++|.+.+.+..+..-. ++. ..+. .+...|.. |++++|...+++........ ...
T Consensus 78 l~~~~~~~~~~-~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 78 FKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQY-YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHhccccCChhHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 33455566667 6788888877766443222 111 1111 23334556 78888888888776543211 113
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-C
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLV-GKEAD-----GDLYDIVLAICASQNEGSAVSRLLSRIEVMN----SLC-K 410 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~----~~p-~ 410 (502)
.+|+.+-..|...|++++|...|++..+. ...|+ ..+|+.+-..|...|++++|.+.++...... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888888888999999999999887632 11122 2477777788889999999998886554322 111 1
Q ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 010739 411 KKTLSWLLRGYIKGGHINDA-AETLTKML 438 (502)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 438 (502)
..+|..+-..|.+.|+.++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55677788888899999999 77677654
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.91 E-value=0.00015 Score=61.68 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=80.3
Q ss_pred HHHHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHH-H-Hhc
Q 010739 242 WKMMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIE-K-YQS 318 (502)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~-~-~~~ 318 (502)
..+...|++++|+..|++..+. .| +...+..+-..+.+. |++++|...++..... .|+...+. +.. . +..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~--~p~~~~~~--~~~~~~~~~ 86 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLET-KQFELAQELLATIPLE--YQDNSYKS--LIAKLELHQ 86 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCGG--GCCHHHHH--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhhc--cCChHHHH--HHHHHHHHh
Confidence 3445567888888777765543 23 345666666777777 6778887777665322 12222211 111 1 111
Q ss_pred -CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 010739 319 -DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVS 396 (502)
Q Consensus 319 -g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~ 396 (502)
+...+|...|++....... +...+..+-..+.+.|++++|...|++..+..-.+ +...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223355555555544322 23356666666666666666666666665432211 2345555555666666666655
Q ss_pred HHHHH
Q 010739 397 RLLSR 401 (502)
Q Consensus 397 ~l~~~ 401 (502)
..++.
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 112
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.88 E-value=0.00044 Score=54.08 Aligned_cols=99 Identities=15% Similarity=0.075 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010739 341 GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRG 420 (502)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 420 (502)
...|..+...+.+.|++++|..+|+++.+.. ..+...+..+...+...|++++|...++.+.... ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777777888888888888888877542 2345666777777788888888888887776654 2356677778888
Q ss_pred HHhCCCHHHHHHHHHHHHHCC
Q 010739 421 YIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 421 ~~~~g~~~~A~~l~~~m~~~g 441 (502)
|...|++++|.+.|+++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 888888888888888877643
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.85 E-value=0.002 Score=56.50 Aligned_cols=181 Identities=10% Similarity=-0.035 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcC----ChHHHH
Q 010739 287 GKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAG----RGLEAE 361 (502)
Q Consensus 287 ~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~ 361 (502)
.+|++.|++..+.| +...+. .|-..|.. ++.++|.+.|++..+.+.+ ..+..|-..|.. + +.++|+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~-~lg~~~~~~~~~~~A~~~~~~a~~~g~~----~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQY-YLADTWVSSGDYQKAEYWAQKAAAQGDG----DALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHTTCH----HHHHHHHHHTTS-STTSCCHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHc-CCCCCCHHHHH
Confidence 34666677766554 233332 36666777 9999999999998887533 367777777777 6 899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----CCCHHHHHH
Q 010739 362 RQLWEMKLVGKEADGDLYDIVLAICAS----QNEGSAVSRLLSRIEVMNSL-CKKKTLSWLLRGYIK----GGHINDAAE 432 (502)
Q Consensus 362 ~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~ 432 (502)
..|++..+.| +...+..+-..+.. .++.++|.+.++.....+.. .+...+..|-..|.. .++.++|.+
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998766 45566666666665 78999999999988876621 126777778888888 889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcccc--ccccHHHHHHHHhhhhhcCC
Q 010739 433 TLTKMLDLGLYPEYMDRVAVLQGLRKRIQ--QSGNVEAYLNLCKRLSDTSL 481 (502)
Q Consensus 433 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~~~~~a~~~~~~m~~~~~ 481 (502)
.|++..+.+ .+...+..|-..+..-.. ...+.++|...++...+.|.
T Consensus 151 ~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 151 YFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998872 223344445445543100 12389999999999888873
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.84 E-value=0.0056 Score=56.92 Aligned_cols=149 Identities=13% Similarity=0.056 Sum_probs=95.6
Q ss_pred HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc--cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH-
Q 010739 125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER--GVGDVVDLLVDMDCVGLKPGFSMIEKVISLY- 201 (502)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~- 201 (502)
+.|..+++|+++++.+.....-+...|+.--..+. ..+ .+++++.+++.+....-+ +..+|+.--..+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~--------~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~ 114 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILK--------NLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG 114 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------TCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH--------HcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 34444489999999999888446667776655444 555 999999999998875332 445666544444
Q ss_pred ---Hhc---CcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hCcHH--HHHHHHHHHHHcCCCCC
Q 010739 202 ---WEM---EKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EGKYV--DAIKLVIHLRESGLKPE 268 (502)
Q Consensus 202 ---~~~---g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g~~~--~a~~~~~~m~~~g~~p~ 268 (502)
.+. ++++++.++++.+.+.+ +.++.+|.+-. -|.++ ++++.++++.+... -|
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~--------------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N 179 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD--------------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KN 179 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TC
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CC
Confidence 444 78899999999998766 23345555443 36666 78888888876532 24
Q ss_pred HhHHHHHHHHHHhcccc------HHHHHHHHHHHHH
Q 010739 269 VYSYLIALTAVVKELNE------FGKALRKLKGYVR 298 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~------~~~a~~~~~~m~~ 298 (502)
-..|+.--..+.+. +. ++++++.++..+.
T Consensus 180 ~sAW~~R~~ll~~l-~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 180 NSAWSHRFFLLFSK-KHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp HHHHHHHHHHHHSS-GGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccchhhhHHHHHHHHHHHHH
Confidence 44555444444444 33 5555555555533
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.84 E-value=0.0011 Score=57.93 Aligned_cols=123 Identities=10% Similarity=-0.101 Sum_probs=89.0
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-C
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-D 319 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g 319 (502)
...+...|++++|++.|++. +.|+...|..+-..+.+. |++++|...+++..+.. ..+...+. .+-..|.. |
T Consensus 13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-~~~~~~~~-~lg~~~~~~~ 85 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRD-KHLAVAYF-QRGMLYYQTE 85 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-ccchHHHH-HHHHHHHHcc
Confidence 44455678999999888765 466788888888888888 78999988888875542 12233333 46666777 8
Q ss_pred cHHhHHHHHHHHHHcCCCCc--------------hHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010739 320 LLADGSRLSSWAIQEGGSSL--------------YGVVHERLLAMYICAGRGLEAERQLWEMKLV 370 (502)
Q Consensus 320 ~~~~a~~~~~~m~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (502)
++++|.+.|++......... ....|..+-..|.+.|++++|...|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888777543222 3357777888888888888888888887754
No 116
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.84 E-value=0.00033 Score=60.58 Aligned_cols=98 Identities=10% Similarity=-0.040 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC----
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLV----GKEA--DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN-SLCK---- 410 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~-~~p~---- 410 (502)
.+++.+-..|...|++++|...+++..+. +-.| ....+..+-..+...|++++|.+.++...... ...+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 45555666666666666666666654432 1111 12234444556666677777766665443211 0111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 411 KKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
..++..+-..|...|++++|.+.+++..+
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22345577777888888888888877543
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.81 E-value=0.00077 Score=55.95 Aligned_cols=82 Identities=12% Similarity=-0.111 Sum_probs=34.7
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|++++|...|++........ ...|..+...+.+.|++++|...+++..+.. ..+...|..+-..+...|++++|.+.
T Consensus 27 ~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 103 (166)
T 1a17_A 27 KDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD 103 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 44444444444443332211 2244444444444555555555554444321 11233333333444444444444444
Q ss_pred HHHHH
Q 010739 399 LSRIE 403 (502)
Q Consensus 399 ~~~m~ 403 (502)
++...
T Consensus 104 ~~~a~ 108 (166)
T 1a17_A 104 YETVV 108 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.80 E-value=0.0011 Score=57.84 Aligned_cols=112 Identities=13% Similarity=-0.093 Sum_probs=54.6
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|++++|.+.|++.. +++...|..+...|.+.|++++|...|++..+.. ..+...|..+-.++...|++++|.+.
T Consensus 20 ~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 20 KDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp TCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHH
Confidence 55555555554431 1133455555555555555555555555554432 12334444444555555555555555
Q ss_pred HHHHHHcCCC--------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739 399 LSRIEVMNSL--------------C-KKKTLSWLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 399 ~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~A~~l~~~ 436 (502)
++........ | ....+..+...|.+.|++++|.+.|++
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5544433211 0 113444455555555555555555554
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.79 E-value=0.00048 Score=56.91 Aligned_cols=105 Identities=10% Similarity=-0.073 Sum_probs=80.9
Q ss_pred CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010739 337 SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLS 415 (502)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~ 415 (502)
.+.+...|..+-..+.+.|++++|...|++..+. .| +...|..+-.++...|++++|.+.++....... -+...|.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~ 108 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVF 108 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHH
Confidence 3445567777778888889999999999888764 45 455666677888888999999988888777652 2567788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010739 416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEY 446 (502)
Q Consensus 416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 446 (502)
.+-.+|.+.|++++|.+.|++.++.. ||.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 88888999999999999999887653 554
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.77 E-value=0.00094 Score=52.07 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=46.3
Q ss_pred HHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010739 314 EKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEG 392 (502)
Q Consensus 314 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 392 (502)
..|.. |++++|.+.|+++...... +...|..+...+.+.|++++|..+|+++.+.. ..+..++..+...+...|++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCH
Confidence 33444 5555555555554443221 22355555555666666666666666555432 22344555555556666666
Q ss_pred hHHHHHHHHHHHc
Q 010739 393 SAVSRLLSRIEVM 405 (502)
Q Consensus 393 ~~a~~l~~~m~~~ 405 (502)
++|.+.++.....
T Consensus 94 ~~A~~~~~~~~~~ 106 (125)
T 1na0_A 94 DEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555443
No 121
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.76 E-value=0.0011 Score=58.12 Aligned_cols=161 Identities=11% Similarity=-0.036 Sum_probs=109.7
Q ss_pred HHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHH----------------HHHHHHhccccHHHHHHHHHHHHHcCCCCch
Q 010739 243 KMMVEGKYVDAIKLVIHLRESGLKPE-VYSYLI----------------ALTAVVKELNEFGKALRKLKGYVRAGSIAEL 305 (502)
Q Consensus 243 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~----------------li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 305 (502)
.+...|++++|+..|++.... .|+ ...|.. +-.++.+. |++++|...+++..+. .|+.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~ 87 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYKELLQK--APNN 87 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH--CCCC
Confidence 445679999999999998765 454 344555 77788888 8999999999988654 3443
Q ss_pred hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHH--H
Q 010739 306 DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGR--GLEAERQLWEMKLVGKEADGDLY--D 380 (502)
Q Consensus 306 ~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~--~ 380 (502)
......+-..|.. |++++|...|++........ ...|..+-..|...|+ .+.+...+.... .|+...+ .
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~ 161 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARY 161 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHH
Confidence 3322256777888 99999999999988876444 3488888888766554 344555555543 4554333 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010739 381 IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW 416 (502)
Q Consensus 381 ~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~ 416 (502)
..-.++...|++++|...++..... .|+......
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 2234555678999999999887754 477554433
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.73 E-value=0.0016 Score=54.04 Aligned_cols=128 Identities=8% Similarity=-0.100 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
..|..+-..+...|++++|...|++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 477788888999999999999999987643 2356778888889999999999999998887765 33677888899999
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHccccccccHHHHHHHHhhh
Q 010739 422 IKGGHINDAAETLTKMLDLGLYPEYMDRVA--VLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
.+.|++++|.+.|++..+..- -+...+.. ....+.+ .|+.++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVK----QKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH----HHHHHHHHHcccch
Confidence 999999999999999887542 23333322 2222444 68899998887654
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.72 E-value=0.00061 Score=57.68 Aligned_cols=119 Identities=10% Similarity=0.079 Sum_probs=91.4
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--hHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI-CASQNEG--SAV 395 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~~~~--~~a 395 (502)
|++++|...+++........ ...|..+-..|...|++++|...|++..+.. ..+...+..+-.. +...|++ ++|
T Consensus 24 ~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQN--SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 78888888888877665433 4588889999999999999999999987643 1245566666666 6788998 999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
...++...... ..+...+..+...|...|++++|...|++..+..
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99998887765 2356777788899999999999999999988764
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.70 E-value=0.0013 Score=52.25 Aligned_cols=104 Identities=13% Similarity=-0.066 Sum_probs=76.9
Q ss_pred hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
....|...-..|.+.|++++|+..|++..+.. +-+...|..+-.++...|++++|.+.++.....+ ..+...|..+-.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 34466777778888888888888888877542 2255667777778888888888888887776655 235777888888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010739 420 GYIKGGHINDAAETLTKMLDLGLYPEYM 447 (502)
Q Consensus 420 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 447 (502)
.|...|++++|.+.|++.++. .|+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CcCCH
Confidence 888889999999988887763 35443
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.70 E-value=0.00046 Score=59.63 Aligned_cols=153 Identities=11% Similarity=-0.066 Sum_probs=104.6
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChh
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV----GKEA-DGDLYDIVLAICASQNEGS 393 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~ 393 (502)
|++++|.+.++... +.+.....+++.+-..+...|++++|...+++..+. +..| ....+..+-..+...|+++
T Consensus 6 g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 6 HDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp -CHHHHHHHHHHHH--TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 78888888544432 234445678888999999999999999999987652 2222 2345666668899999999
Q ss_pred HHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHccccc
Q 010739 394 AVSRLLSRIEVM----NSLC--KKKTLSWLLRGYIKGGHINDAAETLTKMLDLG---LYPE--YMDRVAVLQGLRKRIQQ 462 (502)
Q Consensus 394 ~a~~l~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~~~~~~~~~ 462 (502)
+|.+.++..... +..| ....+..+-..+...|++++|...+++..+.. -.|. ..++..+-..+..
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---- 159 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ---- 159 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----
Confidence 999998655433 2111 23456668888999999999999999876431 1121 2233444455555
Q ss_pred cccHHHHHHHHhhhh
Q 010739 463 SGNVEAYLNLCKRLS 477 (502)
Q Consensus 463 ~~~~~~a~~~~~~m~ 477 (502)
.|+.++|...+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 789999988877663
No 126
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.69 E-value=0.0014 Score=54.00 Aligned_cols=109 Identities=9% Similarity=-0.030 Sum_probs=54.6
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQ 389 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~ 389 (502)
+-..|.+ |++++|.+.|++........ ...|..+-..|.+.|++++|...|++..+. .| +...|..+-..+.+.
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 4444555 66666666666555543222 336666666666666666666666665542 33 234455555555566
Q ss_pred CChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 390 NEGSAVSRL-LSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 390 ~~~~~a~~l-~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
|+.+++.+. ++...... +-+...|...-..+.+.|
T Consensus 113 ~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 655543333 34333332 113444444444444433
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.63 E-value=0.0028 Score=58.67 Aligned_cols=160 Identities=9% Similarity=-0.119 Sum_probs=109.8
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCch----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHH
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLY----GVVHERLLAMYICAGRGLEAERQLWEMKLVGK---EAD--GDLYDI 381 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ 381 (502)
.+..+.. |++++|.+.+.+.........+ ...+..+...+...|++++|...+++..+... .+. ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 4455666 9999999999887776533322 12234455566778999999999999875421 222 457888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 010739 382 VLAICASQNEGSAVSRLLSRIEVM-NSLCK-----KKTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPE-YMDRV 450 (502)
Q Consensus 382 li~~~~~~~~~~~a~~l~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 450 (502)
+-..|...|++++|.+.++..... ...|+ ..+|..+...|.+.|++++|.+.+++.++. +.... ..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 889999999999999999766421 11222 257778999999999999999999987643 22221 45566
Q ss_pred HHHHHHHccccccccHHHH-HHHHhh
Q 010739 451 AVLQGLRKRIQQSGNVEAY-LNLCKR 475 (502)
Q Consensus 451 ~ll~~~~~~~~~~~~~~~a-~~~~~~ 475 (502)
.+-..+.+ .|+.++| ...+++
T Consensus 241 ~lg~~y~~----~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 241 QRGECLRK----LEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHH----TTCCHHHHHHHHHH
T ss_pred HHHHHHHH----cCCcHHHHHHHHHH
Confidence 66666655 5777777 444443
No 128
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.029 Score=54.67 Aligned_cols=202 Identities=8% Similarity=-0.056 Sum_probs=127.7
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCC----------chHHHHHHHHhCcHHHHHHHHHHHHHc-CCCC
Q 010739 199 SLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGP----------TGYLAWKMMVEGKYVDAIKLVIHLRES-GLKP 267 (502)
Q Consensus 199 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~----------~~~~~~~~~~~g~~~~a~~~~~~m~~~-g~~p 267 (502)
..+.+.|++++|.+.|.+..+..-......... +.. ..-+...+...|++++|.+.+...... +-.+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA--SVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS--SBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH--HHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 445778999999999998887653322111110 000 011444555679999999999887653 2222
Q ss_pred CHh---HHHHHHHHHHhccccHHHHHHHHHHHH----HcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----
Q 010739 268 EVY---SYLIALTAVVKELNEFGKALRKLKGYV----RAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG---- 335 (502)
Q Consensus 268 ~~~---ty~~li~~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~---- 335 (502)
+.. .....+..+....++.+++.+++.... +.+..+........+...|.. |++++|..++++....-
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 322 223334444333378999999887763 334444333222357777888 99999999998765432
Q ss_pred CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 336 GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKE-A-D--GDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-~--~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
..+..+.+|..++..|...|++++|..++++.... .+. | . ...+..+...+...++++.|...+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22223557888999999999999999999886543 121 2 1 234555556777889999988877444
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.57 E-value=0.002 Score=50.63 Aligned_cols=96 Identities=9% Similarity=-0.100 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI 422 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 422 (502)
.|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 44445555555555555555555554431 1134444444455555555555555555444432 123444555555556
Q ss_pred hCCCHHHHHHHHHHHHHC
Q 010739 423 KGGHINDAAETLTKMLDL 440 (502)
Q Consensus 423 ~~g~~~~A~~l~~~m~~~ 440 (502)
+.|++++|.+.|++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 666666666666655543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.55 E-value=0.0053 Score=56.48 Aligned_cols=190 Identities=11% Similarity=-0.119 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
.+..+-..+.+.|++ +.|.+.|+...+...-+...|..+-.++. ..|++++|...+++..+.. +-+...|
T Consensus 6 ~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~~~ 75 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYL--------KMQQPEQALADCRRALELD-GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHTTSC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 356667778889999 89999999998877447777877777666 8899999999999987753 3367788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL 273 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 273 (502)
..+-.+|.+.|++++|...|++..+.+ |+ ...+.. .++......+. . -+..........+... .
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~--------~~~~~~~~~~~---~-~~~~~~~~~~~~~~~i-~ 140 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGD--------DIPSALRIAKK---K-RWNSIEERRIHQESEL-H 140 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCS--------HHHHHHHHHHH---H-HHHHHHHTCCCCCCHH-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHH--------HHHHHHHHHHH---H-HHHHHHHHHHhhhHHH-H
Confidence 899999999999999999998877543 22 122333 44444432221 1 1222333333333333 3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc--CcHHhHHHHHHHHHH
Q 010739 274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS--DLLADGSRLSSWAIQ 333 (502)
Q Consensus 274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~--g~~~~a~~~~~~m~~ 333 (502)
..+..+. . ++.++|++.++... ...|+.......+-..+.+ +.+++|.++|.....
T Consensus 141 ~~l~~l~-~-~~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 141 SYLTRLI-A-AERERELEECQRNH--EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHH-H-HHHHHHHTTTSGGG--TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHH-H-HHHHHHHHHHHhhh--ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3334443 4 57888866554433 3355443322123333333 556667777665443
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.55 E-value=0.04 Score=51.13 Aligned_cols=219 Identities=8% Similarity=0.010 Sum_probs=98.1
Q ss_pred HHHhcCcH-HHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hC--cHHHHHHHHHHHHHcCCCCC-Hh
Q 010739 200 LYWEMEKK-ERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EG--KYVDAIKLVIHLRESGLKPE-VY 270 (502)
Q Consensus 200 ~~~~~g~~-~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g--~~~~a~~~~~~m~~~g~~p~-~~ 270 (502)
+..+.|.. ++|+++++.+...+ |+ .+-+|+.-. -| ++++++++++.+... .|. ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n--P~------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~ 104 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL--AS------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQ 104 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TT------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--cH------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHH
Confidence 33455665 35666666666554 22 123343322 24 666666666666554 222 22
Q ss_pred HHHHHHHHH----Hhcc--ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH--hHHHHHHHHHHcCCCCchH
Q 010739 271 SYLIALTAV----VKEL--NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA--DGSRLSSWAIQEGGSSLYG 341 (502)
Q Consensus 271 ty~~li~~~----~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~--~a~~~~~~m~~~~~~~~~~ 341 (502)
+|+.--..+ .+.+ +++++++..++.+.+.. .-+...++ .-.-...+ |..+ ++++.++++.+.......
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~-~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s- 181 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS-YRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS- 181 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH-
Confidence 233322222 2221 34556666665554321 11222232 22222333 4444 555555555554433322
Q ss_pred hHHHHHHHHHHHcCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHcC--CCCCHH
Q 010739 342 VVHERLLAMYICAGR------GLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS-AVSRLLSRIEVMN--SLCKKK 412 (502)
Q Consensus 342 ~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~-~a~~l~~~m~~~~--~~p~~~ 412 (502)
.|+.-...+.+.+. ++++++.++++.... .-|...|+-.-..+.+.|+.. .+..+.+.....+ -..+..
T Consensus 182 -AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 259 (306)
T 3dra_A 182 -AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF 259 (306)
T ss_dssp -HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH
T ss_pred -HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH
Confidence 44444433444443 555555555555432 124444544444454444422 2333333332221 122444
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 413 TLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
.+..+...|.+.|+.++|.++++.+.+
T Consensus 260 al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 260 ALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 555555555555566666666655543
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.53 E-value=0.00051 Score=56.53 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=76.6
Q ss_pred CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010739 338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW 416 (502)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~ 416 (502)
+.+...+..+-..+.+.|++++|...|++.... .| +...|..+-.++...|++++|.+.++...... ..+...+..
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 94 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 334556777777888889999999888887754 34 55666666678888899999988888777665 235677777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 417 LLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
+-.+|...|++++|.+.|++.++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999999887654
No 133
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.01 Score=58.06 Aligned_cols=198 Identities=13% Similarity=-0.015 Sum_probs=136.5
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCC-C---------------HhHHHHHHHHHHhccccHHHHHHHHHHHHH-cCCCC
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKP-E---------------VYSYLIALTAVVKELNEFGKALRKLKGYVR-AGSIA 303 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p-~---------------~~ty~~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p 303 (502)
...+...|++++|++.|....+..-.. + ...+..+...|.+. |++++|.+.+....+ .+-.+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcc
Confidence 344567899999999999988752211 1 12367788999999 899999999988732 22223
Q ss_pred chhchH--HHHHHHH-hc-CcHHhHHHHHHHHHH----cCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC-
Q 010739 304 ELDGKN--LGLIEKY-QS-DLLADGSRLSSWAIQ----EGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GK- 372 (502)
Q Consensus 304 ~~~~~~--~~li~~~-~~-g~~~~a~~~~~~m~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~- 372 (502)
+..+.. ..++..+ .. |+.+.|.+++..... .+....-..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 332211 0233443 34 999999998876554 2233333457888999999999999999999987654 21
Q ss_pred -CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--C-CC-C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 373 -EA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN--S-LC-K--KKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 373 -~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~--~-~p-~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
+| ....|..+...|...|++++|..+++...... . .| . ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 23467777899999999999999997654321 1 12 1 24555677778889999999888877654
No 134
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.51 E-value=0.0027 Score=49.94 Aligned_cols=107 Identities=11% Similarity=-0.054 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS--LCK----KKTLS 415 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~--~p~----~~~~~ 415 (502)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...++....... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356667777777888888888887776543 23455666666777777888888887766654431 122 55677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010739 416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVA 451 (502)
Q Consensus 416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 451 (502)
.+...|.+.|++++|.+.|++..+.. |+......
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 117 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK 117 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 78888889999999999999887753 55444333
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.50 E-value=0.0065 Score=47.51 Aligned_cols=113 Identities=12% Similarity=-0.048 Sum_probs=85.1
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ 389 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 389 (502)
.+...+.. |++++|...|++....... +...|..+...+...|++++|...+++..+.. ..+...+..+-..+...
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 34555666 9999999999888776533 34588888888999999999999999887652 22466777777889999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739 390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI 427 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 427 (502)
|++++|.+.++...... ..+...+..+...+.+.|+.
T Consensus 94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99999999998877664 22566666677777766654
No 136
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.49 E-value=0.1 Score=52.11 Aligned_cols=340 Identities=9% Similarity=-0.058 Sum_probs=171.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc-cHhhHHHHHHHHhhC-CCC-CCHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER-GVGDVVDLLVDMDCV-GLK-PGFS 192 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~-g~~-p~~~ 192 (502)
|...+..+-. |.. +.+..+|+.....- |+...|...++ +.. +.+ ..+....+|+..... |.. .+..
T Consensus 18 yer~l~~~P~-~~~-e~~~~iferal~~~-ps~~LW~~Y~~-f~~-------~~~~~~~~i~~~fe~al~~vg~d~~s~~ 86 (493)
T 2uy1_A 18 MEHARRLYMS-KDY-RSLESLFGRCLKKS-YNLDLWMLYIE-YVR-------KVSQKKFKLYEVYEFTLGQFENYWDSYG 86 (493)
T ss_dssp HHHHHHHHHT-TCH-HHHHHHHHHHSTTC-CCHHHHHHHHH-HHH-------HHC----CTHHHHHHHHHHSTTCTTCHH
T ss_pred HHHHHHHCCC-CCH-HHHHHHHHHHhccC-CCHHHHHHHHH-HHH-------HhCchHHHHHHHHHHHHHHcCCCcccHH
Confidence 3344444433 556 68888888776643 78888887777 432 222 234555666655442 432 3566
Q ss_pred HHHHHHHHHH----hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH------------------hCcH
Q 010739 193 MIEKVISLYW----EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV------------------EGKY 250 (502)
Q Consensus 193 ~y~~li~~~~----~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~------------------~g~~ 250 (502)
.|...+..+. ..|+.+.+.++|+..... |.. .+. -+|.... .+.+
T Consensus 87 iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~---------~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y 153 (493)
T 2uy1_A 87 LYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLS---------ELWKDFENFELELNKITGKKIVGDTLPIF 153 (493)
T ss_dssp HHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THH---------HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHH---------HHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence 7777776654 346777888888887752 211 011 1222111 1234
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcc---cc---HHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739 251 VDAIKLVIHLRESGLKPEVYSYLIALTAVVKEL---NE---FGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~---~~---~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~ 323 (502)
..|..+++++...--..+...|...+.---..+ .+ .+.+..++++.+... ..+...|- ..+..+.+ |+.+.
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~-~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYF-FYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHH-HHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHH-HHHHHHHHcCCHHH
Confidence 444555554443200012234444333322210 11 345667788875432 12233332 34455556 99999
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCC
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG---------KEA---DGDLYDIVLAICASQNE 391 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p---~~~t~~~li~~~~~~~~ 391 (502)
|..++++.... |. +...|. .|+...+.++. ++.+.+.- ..+ ....|...+....+.+.
T Consensus 232 ar~i~erAi~~--P~-~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 232 AKKVVERGIEM--SD-GMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHH--CC-SSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC--CC-cHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 99999998888 33 322332 23332222222 22222210 011 12345555555556677
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccccccccHHH
Q 010739 392 GSAVSRLLSRIEVMNSLCKKKTLSW--LLRGYIKGGHINDAAETLTKMLDLGLYPE-YMDRVAVLQGLRKRIQQSGNVEA 468 (502)
Q Consensus 392 ~~~a~~l~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~ 468 (502)
++.|..+|+.. ... ..+...|-. .+...+ .++.+.|..+|+...+.. |+ ...+...++-..+ .|+.+.
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~----~~~~~~ 372 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLR----IGDEEN 372 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH----HTCHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH----cCCHHH
Confidence 88888888777 221 123333332 222222 236888888888877643 33 2223333443333 577778
Q ss_pred HHHHHhhhhhcCCchhHHHHHHHhhcchhhhh
Q 010739 469 YLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIK 500 (502)
Q Consensus 469 a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~~ 500 (502)
|..+++.......+....++.=.+.|+++.++
T Consensus 373 aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 373 ARALFKRLEKTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 88777776432224455555555566666553
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.49 E-value=0.0033 Score=49.66 Aligned_cols=101 Identities=14% Similarity=-0.027 Sum_probs=75.8
Q ss_pred CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010739 338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWL 417 (502)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~l 417 (502)
+.+...|..+...+.+.|++++|...|++..+.. ..+...+..+-..+...|++++|.+.++...... ..+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3455677888888888888888888888877542 2256667777778888888888888887776654 2356677778
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC
Q 010739 418 LRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 418 i~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
...|.+.|++++|.+.|++..+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888888887654
No 138
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.48 E-value=0.00097 Score=54.93 Aligned_cols=134 Identities=7% Similarity=-0.040 Sum_probs=95.8
Q ss_pred hCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHh
Q 010739 247 EGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~ 323 (502)
.|++++|++.+...... .|+ ...+-.+-..|.+. +++++|++.|++.++. .|+. ..+. .+-..|.+ |++++
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~--~p~~~~a~~-~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINV--QERDPKAHR-FLGLLYELEENTDK 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHTTCHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCchHH
Confidence 47889999888875432 343 34556677888899 8999999999998654 3443 3443 56677888 99999
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQ-LWEMKLVGKEAD-GDLYDIVLAICASQN 390 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~g~~p~-~~t~~~li~~~~~~~ 390 (502)
|...|++..+...... ..|..+-..|.+.|+.++|... +++..+ +.|+ ...|...-..+...|
T Consensus 84 A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQK--DLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 9999999888764443 4899999999999999876655 576664 3454 445554445555544
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.47 E-value=0.0015 Score=53.84 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+..+-..+.+.|++ ++|.+.|+...+..+-+...|..+-.++. ..|++++|+..|++..+..- -+...|.
T Consensus 39 ~~~lg~~~~~~g~~-~eA~~~~~~al~~~P~~~~~~~~lg~~~~--------~~g~~~~Ai~~~~~al~l~P-~~~~~~~ 108 (151)
T 3gyz_A 39 IYSYAYDFYNKGRI-EEAEVFFRFLCIYDFYNVDYIMGLAAIYQ--------IKEQFQQAADLYAVAFALGK-NDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHSS-SCCHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HHccHHHHHHHHHHHHhhCC-CCcHHHH
Confidence 66677788899999 89999999999888557888888888777 89999999999999988532 3567899
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.+-.+|.+.|++++|...|+...+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998765
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.46 E-value=0.0018 Score=59.16 Aligned_cols=185 Identities=11% Similarity=-0.050 Sum_probs=107.9
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCC-HhHHHHH-------HHHHHhccccHHHHHHHHHHHHHcCCCCchhch---------
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPE-VYSYLIA-------LTAVVKELNEFGKALRKLKGYVRAGSIAELDGK--------- 308 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l-------i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--------- 308 (502)
..++..+|.+.|.+.... .|+ ...|+.+ ...+.+. ....+++..+. ...++.|+....
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~-~r~~~a~~~~~--~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRA-WYSRRNFGQLS--GSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHH-HHTGGGTTHHH--HTTTCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHH-HHHHHHHHHHH--HHhcCChhhhhhhhccCCccc
Confidence 478999999999999876 444 3555555 2333333 22233322111 333444432211
Q ss_pred ------------HHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010739 309 ------------NLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD 375 (502)
Q Consensus 309 ------------~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 375 (502)
.......+.. |++++|.++|+.+...+ +.+. ....+-..+.+.+++++|+..|+.... .|+
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d 166 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK---WPD 166 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG---CSC
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc---cCC
Confidence 1124455666 88888888876554432 2233 444444567778888888888874332 222
Q ss_pred H----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 376 G----DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK--KKTLSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 376 ~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
. ..+..+=.++...|++++|...|+........|. .......-.++.+.|+.++|..+|+++....
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 2334444677888888888888877664332243 2244445666777888888888888877643
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0038 Score=49.19 Aligned_cols=97 Identities=13% Similarity=-0.110 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
..|..+-..+.+.|++++|...|++..+.. ..+...|..+-.++...|++++|.+.++...... ..+...|..+-..|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 356666677777888888888888776542 2245666667777788888888888887776654 22566777788888
Q ss_pred HhCCCHHHHHHHHHHHHHC
Q 010739 422 IKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~m~~~ 440 (502)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888887653
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.43 E-value=0.0035 Score=50.81 Aligned_cols=98 Identities=12% Similarity=-0.029 Sum_probs=68.8
Q ss_pred hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010739 340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLL 418 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li 418 (502)
+...+..+-..+.+.|++++|...|++.... .| +...|..+-.++...|++++|...++...... ..+...+..+-
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 3345555666677788888888888877653 34 44555556677777888888888887776654 23556667777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC
Q 010739 419 RGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
.+|...|++++|.+.|++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888877654
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.43 E-value=0.00047 Score=59.71 Aligned_cols=98 Identities=13% Similarity=-0.065 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD--------------GDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
..+..+-..+.+.|++++|...|++..+..- .|+ ...|..+-.++...|++++|...++......
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4666677778888888888888888776421 121 2566777778888899999998888777664
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
..+...+..+-.+|...|++++|.+.|++..+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 336777778888899999999999999987764
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.40 E-value=0.0021 Score=48.90 Aligned_cols=94 Identities=6% Similarity=-0.172 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 010739 344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC--KKKTLSWLLRGY 421 (502)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p--~~~~~~~li~~~ 421 (502)
|..+...+.+.|++++|...|++..+.. ..+...+..+-..+...|++++|.+.++...... .. +...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3333444444444444444444444321 1123333444444444455555544444443332 11 244444455555
Q ss_pred HhC-CCHHHHHHHHHHHHH
Q 010739 422 IKG-GHINDAAETLTKMLD 439 (502)
Q Consensus 422 ~~~-g~~~~A~~l~~~m~~ 439 (502)
.+. |++++|.+.+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 555 555555555555544
No 145
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.40 E-value=0.003 Score=50.16 Aligned_cols=96 Identities=7% Similarity=-0.114 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+...=..+.+.|++ +.|++.|+...+....+...|..+-.++. +.|++++|+..|++..+.. +.+...|.
T Consensus 16 ~~~~G~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 16 EKNKGNEYFKKGDY-PTAMRHYNEAVKRDPENAILYSNRAACLT--------KLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHhhHHH--------hhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 66666788899999 89999999999887557888888888777 8999999999999988753 23678899
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.+-.+|.+.|++++|.+.|++..+..
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999988764
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.39 E-value=0.0048 Score=58.48 Aligned_cols=146 Identities=10% Similarity=-0.090 Sum_probs=93.1
Q ss_pred CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739 268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERL 347 (502)
Q Consensus 268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l 347 (502)
+...|..+-..+.+. +++++|...|++..+.. |+..... .+.+.++- +.....|..+
T Consensus 146 ~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~--p~~~~~~-----------~~~~~~~~---------~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKE-GKYKQALLQYKKIVSWL--EYESSFS-----------NEEAQKAQ---------ALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHT--TTCCCCC-----------SHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHh--hccccCC-----------hHHHHHHH---------HHHHHHHHHH
Confidence 455667777777777 67888888777764432 2111000 00000000 0013477777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739 348 LAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI 427 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 427 (502)
-.+|.+.|++++|...|++..+.. .-+...|..+-.++...|++++|...|+...... .-+...+..+...+.+.|+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 778888888888888888877642 2255667777778888888888888887776654 22566777788888888888
Q ss_pred HHH-HHHHHHHH
Q 010739 428 NDA-AETLTKML 438 (502)
Q Consensus 428 ~~A-~~l~~~m~ 438 (502)
++| ..+|+.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887 44666664
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.39 E-value=0.0034 Score=49.58 Aligned_cols=97 Identities=9% Similarity=-0.109 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
.|..+-..+.+.|++ +.|.+.|+...+....+...+..+...+. ..|++++|...+++..+.. +.+...+
T Consensus 18 ~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~--------~~~~~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 18 MVKNKGNECFQKGDY-PQAMKHYTEAIKRNPKDAKLYSNRAACYT--------KLLEFQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHTTCS-HHHHHHHHHHHTTCTTCHHHHHHHHHHHT--------TTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHH--------HhccHHHHHHHHHHHHHhC-CCchHHH
Confidence 377888889999999 89999999998877457778887777676 8999999999999988753 3467889
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
..+...|.+.|++++|.+.|++..+..
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999987654
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.37 E-value=0.0013 Score=55.65 Aligned_cols=119 Identities=11% Similarity=0.101 Sum_probs=70.7
Q ss_pred HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH-HHh
Q 010739 125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL-YWE 203 (502)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~-~~~ 203 (502)
..|++ +.|.+.++...+....+...|..+...+. ..|++++|...|++..+.. +.+...+..+... |.+
T Consensus 22 ~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 22 SQQNP-EAQLQALQDKIRANPQNSEQWALLGEYYL--------WQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQ 91 (177)
T ss_dssp ------CCCCHHHHHHHHHCCSCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred hccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 34566 57777777766665345666666666555 6777777777777766542 2255566666666 667
Q ss_pred cCcH--HHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc
Q 010739 204 MEKK--ERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES 263 (502)
Q Consensus 204 ~g~~--~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~ 263 (502)
.|++ ++|...|++..+.+ |+. ..+.. +...+...|++++|...|++....
T Consensus 92 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~--------la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALD--SNEITALML--------LASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCcchHHHHHHHHHHHHhC--CCcHHHHHH--------HHHHHHHcccHHHHHHHHHHHHhh
Confidence 7776 77777777776554 221 11111 333444467777777777776654
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.36 E-value=0.0063 Score=48.49 Aligned_cols=99 Identities=9% Similarity=-0.091 Sum_probs=74.6
Q ss_pred hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
+...|..+-..+.+.|++++|...|++..+.. ..+...|..+-..+...|++++|...++...... ..+...+..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44577777788888888888888888876543 2245666777778888888888888887776655 235677777888
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 010739 420 GYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 420 ~~~~~g~~~~A~~l~~~m~~~ 440 (502)
.|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888899999999888887653
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.36 E-value=0.0024 Score=58.32 Aligned_cols=195 Identities=10% Similarity=-0.052 Sum_probs=118.9
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHhcCcHHHHHHHHHHHHHcCCCCCCcccccc-CCCC---
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKV-------ISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQ-QGGP--- 236 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~l-------i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~-~~~~--- 236 (502)
..++...|...|.+..+..- -....|+.+ ...+.+.++..++...+ -...++.|+....... .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~--~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQL--SGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHH--HHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHH--HHHhcCChhhhhhhhccCCccccc
Confidence 56899999999999988532 245677766 35555544444443333 3344556655433332 2211
Q ss_pred -------chH---HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--
Q 010739 237 -------TGY---LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-- 304 (502)
Q Consensus 237 -------~~~---~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-- 304 (502)
..+ ....+...|++++|.++|+.+... .|+....-.+-..+.+. +++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccH
Confidence 000 223344479999999999887764 35554444444466666 78999998887543322 111
Q ss_pred hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCC-CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010739 305 LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGG-SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV 370 (502)
Q Consensus 305 ~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 370 (502)
...+. .+-.++.. |++++|++.|++...... |......+...-.++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~-~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGV-AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHH-HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11121 35555777 888899888888764333 3323335566666778888888888888888764
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.36 E-value=0.0069 Score=46.41 Aligned_cols=97 Identities=12% Similarity=-0.093 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
..|..+...+...|++++|...|++..... ..+...+..+...+...|++++|...++...... ..+...+..+...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 356666777777888888888887776542 2245566666677777788888888777666554 22566777777888
Q ss_pred HhCCCHHHHHHHHHHHHHC
Q 010739 422 IKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~m~~~ 440 (502)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 8888888888888887654
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.36 E-value=0.0074 Score=57.15 Aligned_cols=129 Identities=12% Similarity=-0.025 Sum_probs=97.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 341 GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD--------------GDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
...|..+-..|.+.|++++|...|++..+..-... ...|..+-.++.+.|++++|.+.++......
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45777788888888999999998888776432211 4788888899999999999999999887765
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccccccccHHHHH-HHHhhh
Q 010739 407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP-EYMDRVAVLQGLRKRIQQSGNVEAYL-NLCKRL 476 (502)
Q Consensus 407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~-~~~~~m 476 (502)
..+...|..+-.+|...|++++|...|++.++.. | +...+..+-..+.. .|+.+++. ..++.|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQR----IRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3378888889999999999999999999988753 4 34455555555554 56777663 344444
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.0063 Score=49.06 Aligned_cols=99 Identities=13% Similarity=-0.093 Sum_probs=77.0
Q ss_pred chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 010739 339 LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD----GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL 414 (502)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~ 414 (502)
.+...|..+...+.+.|++++|...|++..+ ..|+ ...|..+-..+...|++++|.+.++...... ..+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 3456777788888888999999999988875 3566 5666677778888899999988887776654 2356677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 415 SWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 415 ~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
..+...|...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77888888999999999999987764
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.32 E-value=0.0063 Score=50.56 Aligned_cols=99 Identities=10% Similarity=-0.088 Sum_probs=71.0
Q ss_pred hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
+...|..+-..+.+.|++++|...|++..+.. .-+...|..+-.++...|++++|.+.++...... .-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566677777777888888888888776542 1245566666677778888888888887776654 225667777888
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 010739 420 GYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 420 ~~~~~g~~~~A~~l~~~m~~~ 440 (502)
.|.+.|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887654
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.31 E-value=0.0075 Score=47.84 Aligned_cols=105 Identities=9% Similarity=0.003 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS--LCK----KKTL 414 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~--~p~----~~~~ 414 (502)
..+..+-..+.+.|++++|+..|++..+. .| +...|+.+-.++...|++++|.+.++....... .++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 46667777777888888888888877653 34 355566666777888888888877765544321 111 2356
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010739 415 SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRV 450 (502)
Q Consensus 415 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 450 (502)
..+-..|...|++++|.+.|++.+.. .||..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 66777888899999999999987763 35554433
No 156
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.28 E-value=0.18 Score=50.32 Aligned_cols=324 Identities=6% Similarity=-0.070 Sum_probs=180.3
Q ss_pred cChhhHHHHHHHHHHcCCChHHHHHHHHHHHHc-C--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC
Q 010739 111 LSARELQLVLVYFSQEGRDSWCALEVFEWLKKE-N--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL 187 (502)
Q Consensus 111 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 187 (502)
++.+.|..-+....+.+...+....+|+..... | ..+...|...+. +... .....++++.+..+|+...+...
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~-f~~~---~~~~~~~~~~vR~iy~rAL~~P~ 120 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE-EEGK---IEDEQTRIEKIRNGYMRALQTPM 120 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH-HTSS---CSSHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH-HHHh---chhhhHHHHHHHHHHHHHHhChh
Confidence 344557777777766664324677888887754 4 346778887777 4310 00035778899999999887422
Q ss_pred CCCHHHHHHHHHHHH-------------hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH---hCc--
Q 010739 188 KPGFSMIEKVISLYW-------------EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV---EGK-- 249 (502)
Q Consensus 188 ~p~~~~y~~li~~~~-------------~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~---~g~-- 249 (502)
.--...|......-. +.+.+..|..+++++...- ++. +.-+|.... .++
T Consensus 121 ~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~--~~~-----------s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 121 GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI--RGW-----------SVKNAARLIDLEMENGM 187 (493)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC-----------SHHHHHHHHHHHHTCTT
T ss_pred hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH--hhc-----------cHHHHHHHHHHHhcCCc
Confidence 111122222211110 1122334444444443210 000 001222222 121
Q ss_pred -------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739 250 -------YVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL 321 (502)
Q Consensus 250 -------~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~ 321 (502)
.+.+..+|++.... ++-+...|-..+.-+.+. |+.++|..+++.-... |...... -.|.. ...
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~-~~~~~ar~i~erAi~~---P~~~~l~----~~y~~~~e~ 258 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGI-GQKEKAKKVVERGIEM---SDGMFLS----LYYGLVMDE 258 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH---CCSSHHH----HHHHHHTTC
T ss_pred cCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC---CCcHHHH----HHHHhhcch
Confidence 45677888888775 344566777777777777 7999999999998766 5544322 12333 222
Q ss_pred HhHHHHHHHHHHcC----------CC-CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHh
Q 010739 322 ADGSRLSSWAIQEG----------GS-SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYD--IVLAICAS 388 (502)
Q Consensus 322 ~~a~~~~~~m~~~~----------~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~ 388 (502)
++. ++.+...- .+ ......|-..+....+.+..+.|..+|++....+ .+...|. +.+....
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~- 332 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA- 332 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-
Confidence 222 32222211 01 1112456666776767888999999999982222 2444443 3333332
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHH
Q 010739 389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEA 468 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~ 468 (502)
.++.+.|..+|+.....- .-+...+...++-..+.|+.+.|..+|++.. .....|...++-=.. .|+.+.
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~----~G~~~~ 402 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM----VGSMEL 402 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH----HSCHHH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH----CCCHHH
Confidence 347999999998765532 1134445557777788899999999999962 245555555543333 477777
Q ss_pred HHHHHhhh
Q 010739 469 YLNLCKRL 476 (502)
Q Consensus 469 a~~~~~~m 476 (502)
+.++++..
T Consensus 403 ~r~v~~~~ 410 (493)
T 2uy1_A 403 FRELVDQK 410 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655555
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.28 E-value=0.0034 Score=47.73 Aligned_cols=98 Identities=11% Similarity=-0.035 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC--CH
Q 010739 114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP--GF 191 (502)
Q Consensus 114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~ 191 (502)
..+..+-..+.+.|++ +.|...|+...+....+...|..+...+. ..|++++|...|++..+.. +. +.
T Consensus 7 ~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~a~~~~-~~~~~~ 76 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNY-TESIDLFEKAIQLDPEESKYWLMKGKALY--------NLERYEEAVDCYNYVINVI-EDEYNK 76 (112)
T ss_dssp TGGGGHHHHHHSSCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTS-CCTTCH
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhC-cccchH
Confidence 3467777788899999 89999999998887557777777777676 8999999999999988753 23 57
Q ss_pred HHHHHHHHHHHhc-CcHHHHHHHHHHHHHcC
Q 010739 192 SMIEKVISLYWEM-EKKERAVLFVKAVLSRG 221 (502)
Q Consensus 192 ~~y~~li~~~~~~-g~~~~A~~l~~~m~~~~ 221 (502)
..+..+...|.+. |++++|.+.|++.....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8899999999999 99999999999987665
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.27 E-value=0.0051 Score=47.19 Aligned_cols=97 Identities=9% Similarity=-0.154 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
.+..+...+...|++ +.|.+.|+...+....+...+..+...+. ..|++++|...+++..+.. +.+...+
T Consensus 6 ~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~~~~~~-~~~~~~~ 75 (118)
T 1elw_A 6 ELKEKGNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYA--------KKGDYQKAYEDGCKTVDLK-PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHhC-cccHHHH
Confidence 366777788899999 89999999998877457777777777666 8999999999999988753 3367889
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
..+...|.+.|++++|.+.|++..+.+
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 999999999999999999999987654
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.26 E-value=0.0042 Score=50.91 Aligned_cols=96 Identities=9% Similarity=-0.171 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+..+-..+.+.|++ +.|...|+........+...|..+-.++. ..|++++|...|++..+.. +-+...|.
T Consensus 24 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~l~-p~~~~~~~ 93 (148)
T 2vgx_A 24 LYSLAFNQYQSGXY-EDAHXVFQALCVLDHYDSRFFLGLGACRQ--------AMGQYDLAIHSYSYGAVMD-IXEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHS-TTCTHHHH
T ss_pred HHHHHHHHHHcCCh-HHHHHHHHHHHHcCcccHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 56677788899999 89999999998887557888887777666 8999999999999988753 23567888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.+-.+|...|++++|.+.|+...+..
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999887654
No 160
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.24 E-value=0.0045 Score=50.60 Aligned_cols=96 Identities=14% Similarity=0.011 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD----GDLYDIVLAICASQNEGSAVSRLLSRIEVM----NSLC-KKK 412 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~----~~~p-~~~ 412 (502)
++..+-..+...|++++|...+++..+..- .++ ...+..+-..+...|++++|.+.++..... +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 556666666667777777777766543210 011 233444445666666666666666544322 1111 123
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 413 TLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
.+..+...|...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44456666777777777777777654
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.23 E-value=0.0048 Score=49.96 Aligned_cols=96 Identities=8% Similarity=-0.159 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+..+-..+.+.|++ +.|...|+........+...|..+-.++. ..|++++|...|+...+.. +-+...|.
T Consensus 21 ~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~ 90 (142)
T 2xcb_A 21 LYALGFNQYQAGKW-DDAQKIFQALCMLDHYDARYFLGLGACRQ--------SLGLYEQALQSYSYGALMD-INEPRFPF 90 (142)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCTHHHH
T ss_pred HHHHHHHHHHHccH-HHHHHHHHHHHHhCCccHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHhcC-CCCcHHHH
Confidence 55566678889999 89999999999887557778887777666 8999999999999988764 33667888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.+-.+|...|++++|.+.|+...+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999887654
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.20 E-value=0.019 Score=52.68 Aligned_cols=193 Identities=8% Similarity=-0.107 Sum_probs=111.4
Q ss_pred CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739 268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE 345 (502)
Q Consensus 268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~ 345 (502)
+...+..+-..+.+. |++++|...+.+..+. .|+ ...+. .+-..|.+ |++++|.+.+++..... +.+...|.
T Consensus 3 ~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~-~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVG-RKYPEAAACYGRAITR--NPLVAVYYT-NRALCYLKMQQPEQALADCRRALELD--GQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHH
T ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCccHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 345566666777777 7888888888777543 343 33333 45566777 88888888887766543 23445788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLVGKEADG-DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG 424 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 424 (502)
.+-.+|.+.|++++|...|++..+.. |+. ..+...+....+ ...+ .-+..........+......+ ..+ ..
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l-~~l-~~ 148 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYL-TRL-IA 148 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHH-HHH-HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHH-HHH-HH
Confidence 88888889999999999888876531 211 001111111111 0111 112223333333344443333 322 36
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739 425 GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 425 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
|+.++|.+.+++..+ ..|+......-+.+... +..+..+++.++|....+
T Consensus 149 ~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~--~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHE--GHEDDGHIRAQQACIEA--KHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHH--HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhc--cccchhhhhhHHHHHHH--HHHHHHHHHHHHHHhhhc
Confidence 888899888887654 36766555444444432 113667888888876644
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0067 Score=47.73 Aligned_cols=97 Identities=7% Similarity=-0.074 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
.|...-..+.+.|++ +.|++.|+...+....+...|..+-.++. ..|++++|...+++..+.. +-+...|
T Consensus 6 ~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 6 EARLEGKEYFTKSDW-PNAVKAYTEMIKRAPEDARGYSNRAAALA--------KLMSFPEAIADCNKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 356666778899999 89999999999887557788888888777 8999999999999988863 3367889
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
..+-.+|.+.|++++|...|++..+..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999999999887543
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.14 E-value=0.0072 Score=52.05 Aligned_cols=98 Identities=10% Similarity=-0.105 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
..|..+-.+|.+.|++++|...+++..+.. ..+...+..+-.++...|++++|.+.++...... .-+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 466667777777888888888887776542 2245566666677778888888888887766554 22455666666666
Q ss_pred HhCCCHHHHH-HHHHHHHHCC
Q 010739 422 IKGGHINDAA-ETLTKMLDLG 441 (502)
Q Consensus 422 ~~~g~~~~A~-~l~~~m~~~g 441 (502)
...++.+++. ..|..|...|
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 6666666665 4555555443
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.13 E-value=0.16 Score=47.74 Aligned_cols=133 Identities=12% Similarity=0.165 Sum_probs=89.6
Q ss_pred HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc-cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 010739 125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER-GVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE 203 (502)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 203 (502)
+.... ++|+++++.+.....-+...|+.--..+. ..+ .+++++.+++.+....- -+..+|+.--..+.+
T Consensus 66 ~~e~s-e~AL~lt~~~L~~nP~~ytaWn~R~~iL~--------~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 66 KEEKS-ERALELTEIIVRMNPAHYTVWQYRFSLLT--------SLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDR 135 (349)
T ss_dssp TTCCS-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHH
T ss_pred hCCCC-HHHHHHHHHHHHhCchhHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 34445 79999999999888446667776655444 455 69999999999998644 377888888777777
Q ss_pred c-C-cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hCcHH--------HHHHHHHHHHHcCCCCC
Q 010739 204 M-E-KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EGKYV--------DAIKLVIHLRESGLKPE 268 (502)
Q Consensus 204 ~-g-~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g~~~--------~a~~~~~~m~~~g~~p~ 268 (502)
. + +++++.++++.+.+.+ +.++..|++-. -|.++ ++++.++++.+.. .-|
T Consensus 136 l~~~~~~~EL~~~~k~L~~d--------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N 200 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD--------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRN 200 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC--------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTC
T ss_pred hcCCChHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCC
Confidence 6 7 8899999999998665 22335555432 23333 6666777666652 224
Q ss_pred HhHHHHHHHHHHhc
Q 010739 269 VYSYLIALTAVVKE 282 (502)
Q Consensus 269 ~~ty~~li~~~~~~ 282 (502)
...|+.--..+.+.
T Consensus 201 ~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 201 NSAWGWRWYLRVSR 214 (349)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhc
Confidence 44555544444444
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.11 E-value=0.0072 Score=50.20 Aligned_cols=97 Identities=5% Similarity=-0.138 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI 194 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y 194 (502)
.|..+-..+.+.|++ +.|++.|+...+...-+...|..+-.++. ..|++++|+..|++..+.. +-+...|
T Consensus 13 ~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 13 KLKSEGNAAMARKEY-SKAIDLYTQALSIAPANPIYLSNRAAAYS--------ASGQHEKAAEDAELATVVD-PKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCcCHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 377777888899999 89999999999887457788888888777 8999999999999988864 3368899
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
..+-.+|.+.|++++|.+.|++..+..
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987654
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.10 E-value=0.0091 Score=47.51 Aligned_cols=99 Identities=10% Similarity=-0.122 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739 113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS 192 (502)
Q Consensus 113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 192 (502)
+..|..+-..+.+.|++ +.|...|+...+....+...|..+..++. ..|++++|...+++..+.. +-+..
T Consensus 9 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYL--------KMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHhCcH-HHHHHHHHHHHhhCcCcHHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHhC-chhHH
Confidence 34477888889999999 89999999998887457778888877677 8999999999999988864 33678
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.|..+-..|.+.|++++|...|++..+..
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999999999999887654
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.04 E-value=0.0054 Score=48.08 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC--CCC--
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL--KPG-- 190 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~--~p~-- 190 (502)
.|..+-..+.+.|++ +.|...|+...+....+...+..+...+. ..|++++|...+++..+..- .++
T Consensus 6 ~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 6 KEKELGNDAYKKKDF-DTALKHYDKAKELDPTNMTYITNQAAVYF--------EKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHhcCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHH--------HhccHHHHHHHHHHHHhhccccchhHH
Confidence 467777888899999 89999999998877557777877777676 89999999999999877532 222
Q ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 191 --FSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 191 --~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
..+|..+...|.+.|++++|.+.|++..+..
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7788999999999999999999999988754
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.01 E-value=0.0013 Score=51.30 Aligned_cols=59 Identities=10% Similarity=-0.037 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 380 DIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 380 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
..+-..+...|++++|.+.++....... -+...+..+..+|.+.|++++|.+.|++...
T Consensus 31 ~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 31 LGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444455555555555544444331 1344555555666666666666666665544
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.00 E-value=0.0059 Score=49.85 Aligned_cols=132 Identities=14% Similarity=-0.013 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----H
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKE-AD----GDLYDIVLAICASQNEGSAVSRLLSRIEVMNS-LCK----K 411 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-~p~----~ 411 (502)
.++..+-..|...|++++|...+++..+..-. ++ ...+..+-..+...|++++|.+.++....... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 47777888888899999999999887653111 12 13667777889999999999999976543221 112 4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739 412 KTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPE-YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~ 477 (502)
..+..+...|...|++++|.+.+++..+. +-.+. ..++..+-..+.. .|+.++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHH
Confidence 45666888899999999999999987643 22111 2344555555555 689999999887654
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.96 E-value=0.0076 Score=47.32 Aligned_cols=96 Identities=10% Similarity=-0.069 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+-.+-..+.+.|++ +.|+..|+...+...-+...|..+-.++. ..|++++|+..|++..+..- -+...+.
T Consensus 20 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~--------~~g~~~~A~~~~~~al~l~P-~~~~~~~ 89 (121)
T 1hxi_A 20 PMEEGLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQA--------ENEKDGLAIIALNHARMLDP-KDIAVHA 89 (121)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 44455667788999 89999999999887447778877777666 89999999999999887532 3677899
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.+-..|.+.|++++|...|++..+..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999887543
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.90 E-value=0.027 Score=44.05 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=52.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 010739 348 LAMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK---KKTLSWLLRG 420 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~---~~~~~~li~~ 420 (502)
-..+.+.|++++|...|++..+.. |+. ..+..+-.++...|++++|...++........ + ...+..+...
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344555666666666666655432 221 23444445566666666666666655544311 2 3455566677
Q ss_pred HHhCCCHHHHHHHHHHHHHC
Q 010739 421 YIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 421 ~~~~g~~~~A~~l~~~m~~~ 440 (502)
|.+.|++++|.+.|++..+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.84 E-value=0.0043 Score=61.91 Aligned_cols=116 Identities=12% Similarity=-0.083 Sum_probs=77.6
Q ss_pred Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 010739 316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSA 394 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 394 (502)
|.+ |++++|.+.|++..+.... +...|..+-.+|.+.|++++|...+++..+.. .-+...|..+-.++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 445 7888888888877766433 34578888888888888888888888877652 2245667777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 010739 395 VSRLLSRIEVMNSLCKKKTLSWLLRG--YIKGGHINDAAETLT 435 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 435 (502)
|.+.++....... -+...+..+-.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888877665542 133344444444 777788888888887
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.83 E-value=0.015 Score=45.51 Aligned_cols=91 Identities=11% Similarity=-0.038 Sum_probs=52.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010739 346 RLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG 424 (502)
Q Consensus 346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 424 (502)
.+-..+.+.|++++|...|++..+. .| +...|..+-.++...|+.++|...++....... -+...+..+...|.+.
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3444555666666666666665542 23 334444444566666666666666665555431 2445555666666677
Q ss_pred CCHHHHHHHHHHHHH
Q 010739 425 GHINDAAETLTKMLD 439 (502)
Q Consensus 425 g~~~~A~~l~~~m~~ 439 (502)
|++++|...|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766554
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.79 E-value=0.021 Score=44.78 Aligned_cols=95 Identities=11% Similarity=-0.094 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCh---HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC---
Q 010739 117 QLVLVYFSQEGRDSWCALEVFEWLKKENRVDN---ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG--- 190 (502)
Q Consensus 117 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~--- 190 (502)
-.+-..+.+.|++ +.|.+.|+...+....+. ..+..+-.++. ..|++++|...|++..+..- -+
T Consensus 6 ~~~a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~--------~~~~~~~A~~~~~~~~~~~p-~~~~~ 75 (129)
T 2xev_A 6 YNVAFDALKNGKY-DDASQLFLSFLELYPNGVYTPNALYWLGESYY--------ATRNFQLAEAQFRDLVSRYP-THDKA 75 (129)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCT-TSTTH
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH--------HhccHHHHHHHHHHHHHHCC-CCccc
Confidence 3445567788999 899999999988762233 35555555555 89999999999999887532 23
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
...+..+-.+|.+.|++++|...|++..+..
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6778889999999999999999999998765
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.72 E-value=0.4 Score=45.06 Aligned_cols=113 Identities=10% Similarity=0.068 Sum_probs=68.4
Q ss_pred ccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH--
Q 010739 170 RGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME-KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-- 246 (502)
Q Consensus 170 ~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-- 246 (502)
+.-++|+.+++++....- -+..+||.--..+...| ++++++++++.+...+ +.++-+|+.-.
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--------------PKny~aW~hR~wl 132 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--------------LKSYQVWHHRLLL 132 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--------------CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHH
Confidence 334456666666665422 24556777666667777 5999999999998776 22335555433
Q ss_pred ---h-C-cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHH--------HHHHHHHHHHHc
Q 010739 247 ---E-G-KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFG--------KALRKLKGYVRA 299 (502)
Q Consensus 247 ---~-g-~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~--------~a~~~~~~m~~~ 299 (502)
. + ++++++++++.+.+. -.-|...|+.---.+.+. +..+ ++++.++++.+.
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLP-DPKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSS-CTTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHh
Confidence 2 5 778888888888754 222445555443344333 2233 666666666544
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.022 Score=45.69 Aligned_cols=96 Identities=8% Similarity=-0.095 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC
Q 010739 115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVD----NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG 190 (502)
Q Consensus 115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 190 (502)
.+..+-..+.+.|++ +.|.+.|+...+.. |+ ...|..+...+. ..|++++|...+++..+.. +.+
T Consensus 30 ~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~~~~~~-~~~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDY-GGALAAYTQALGLD-ATPQDQAVLHRNRAACHL--------KLEDYDKAETEASKAIEKD-GGD 98 (148)
T ss_dssp HHHHHHHHHHTTTCH-HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHH--------HHccHHHHHHHHHHHHhhC-ccC
Confidence 366677778889999 89999999998876 54 456666666565 8999999999999987753 336
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
...|..+..+|.+.|++++|.+.|++..+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7888999999999999999999999987654
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.60 E-value=0.0033 Score=48.96 Aligned_cols=86 Identities=10% Similarity=-0.024 Sum_probs=60.1
Q ss_pred hhccHhhHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVG--LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g--~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~ 244 (502)
..|++++|+..|++..+.+ -+-+...|..+-..|.+.|++++|.+.|++..+.. |+. ..+.. +...+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~--------l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVF--------YAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHH--------HHHHH
Confidence 4688999999999988864 23345788889999999999999999999988765 332 11211 44555
Q ss_pred HHhCcHHHHHHHHHHHHHc
Q 010739 245 MVEGKYVDAIKLVIHLRES 263 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~ 263 (502)
...|++++|++.|++....
T Consensus 72 ~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5578888888888877654
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.58 E-value=0.014 Score=46.20 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCCC---
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKPG--- 190 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~--- 190 (502)
+..+=..+.+.|++ +.|++.|+...+..+-+...|+.+-.++. ..|++++|+..+++..+.. ..++
T Consensus 11 ~~~lG~~~~~~~~~-~~A~~~y~~Al~~~p~~~~~~~nlg~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 11 EKDLGNAAYKQKDF-EKAHVHYDKAIELDPSNITFYNNKAAVYF--------EEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHH--------HhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 55666778899999 89999999999887457788888877777 8999999999999877632 1111
Q ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 191 -FSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 191 -~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
..+|..+-.+|...|++++|.+.|++..+..
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2467888889999999999999999876643
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.49 E-value=0.011 Score=58.79 Aligned_cols=124 Identities=9% Similarity=-0.130 Sum_probs=82.3
Q ss_pred Hhc-CcHHhHHHHHHHHHHcC---C--C-CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CC---CCC-HHHHHH
Q 010739 316 YQS-DLLADGSRLSSWAIQEG---G--S-SLYGVVHERLLAMYICAGRGLEAERQLWEMKLV---GK---EAD-GDLYDI 381 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~~---~--~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~---~p~-~~t~~~ 381 (502)
+.. |++++|+.++++..... . . +.-..+++.|...|...|++++|+.++++..+- -+ .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445 88888888887665432 1 1 123457888888888899999998888876542 12 222 346777
Q ss_pred HHHHHHhcCChhHHHHHHHHHH-----HcCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 382 VLAICASQNEGSAVSRLLSRIE-----VMNS-LCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 382 li~~~~~~~~~~~a~~l~~~m~-----~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
|-..|...|++++|..+++... ..|. .|+ ..+.+.+-.++...+.+++|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888875432 2332 222 33444566677777888888888888765
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.47 E-value=0.11 Score=42.59 Aligned_cols=112 Identities=13% Similarity=0.000 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLV-------GK---------EA-DGDLYDIVLAICASQNEGSAVSRLLSRIEV 404 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~---------~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~ 404 (502)
..+...-..+.+.|++++|...|.+..+. .- .| +...|..+-.++.+.|++++|...++....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35666667777788888888777776653 00 12 234566677788889999999998887776
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 010739 405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM-DRVAVLQGL 456 (502)
Q Consensus 405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~ 456 (502)
.. ..+...|..+-.+|...|++++|...|++.+.. .|+.. .....+..+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMKIV 141 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 65 336778888999999999999999999987764 46544 444444443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.38 E-value=0.072 Score=52.64 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEAD----------------GDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
.|..+-..|.+.|++++|...|++..+. .|+ ...|..+-.++.+.|++++|...++......
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4555555555666666666666655542 121 3455555566666666666666666555543
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
..+...|..+-.+|...|++++|...|++.++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22455555666666666666666666666554
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.36 E-value=0.018 Score=57.46 Aligned_cols=114 Identities=12% Similarity=0.005 Sum_probs=84.9
Q ss_pred HHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-Cc
Q 010739 244 MMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DL 320 (502)
Q Consensus 244 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~ 320 (502)
+...|++++|++.|++..+. .| +..+|..+-.++.+. +++++|++.+++..+. .|+ ...+. .+-..|.. |+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l--~p~~~~~~~-~lg~~~~~~g~ 89 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIEL--DKKYIKGYY-RRAASNMALGK 89 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHS--CTTCHHHHH-HHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCC
Confidence 34579999999999998876 44 478888899999999 8999999999988665 344 33443 46667888 99
Q ss_pred HHhHHHHHHHHHHcCCCCchHhHHHHHHHH--HHHcCChHHHHHHHH
Q 010739 321 LADGSRLSSWAIQEGGSSLYGVVHERLLAM--YICAGRGLEAERQLW 365 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~ 365 (502)
+++|.+.|++..+......+ .+..+-.+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998887644444 55555555 888899999999988
No 184
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.29 E-value=0.18 Score=40.27 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=27.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 010739 389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLG 441 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 441 (502)
.++.++|.+.++...+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 345555555555444443 33444445555555 566666666666666655
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.26 E-value=0.042 Score=54.36 Aligned_cols=96 Identities=11% Similarity=-0.077 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 421 (502)
..|..+-.+|.+.|++++|+..+++..+.. .-+...|..+-.++...|++++|...|+...... .-+...+..+-..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 467777777788888888888888777642 2245666666677888888888888887776554 22455666677777
Q ss_pred HhCCCHHHHHH-HHHHHHH
Q 010739 422 IKGGHINDAAE-TLTKMLD 439 (502)
Q Consensus 422 ~~~g~~~~A~~-l~~~m~~ 439 (502)
.+.|+.++|.+ +++.|..
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 77777776653 4555543
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.24 E-value=0.068 Score=51.17 Aligned_cols=97 Identities=8% Similarity=-0.073 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLV--------------GKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS 407 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~ 407 (502)
.|..+-..+.+.|++++|...|++..+. ...| +...|..+-.++.+.|++++|.+.++......
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 5666777777888888888888776641 0222 34566667778888888888888888777654
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 408 LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 408 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
..+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 235677777888888999999999999887764
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.10 E-value=0.024 Score=56.41 Aligned_cols=127 Identities=12% Similarity=-0.034 Sum_probs=89.6
Q ss_pred HHHHcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HcCC-CC-CHHHHH
Q 010739 350 MYICAGRGLEAERQLWEMKLV---GKEA----DGDLYDIVLAICASQNEGSAVSRLLSRIE-----VMNS-LC-KKKTLS 415 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~li~~~~~~~~~~~a~~l~~~m~-----~~~~-~p-~~~~~~ 415 (502)
.+-..|++++|+.++++..+. -+-| ...+++.|...|...|++++|..+++... ..|. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355689999999999887654 2223 24578889999999999999999986542 2332 23 245677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH-----CCC-CCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739 416 WLLRGYIKGGHINDAAETLTKMLD-----LGL-YPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 416 ~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~ 479 (502)
.|-..|...|++++|..++++.++ .|- .|+......++..+. ...++..+|...+..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~---~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE---MELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999998764 342 244444333343332 1267889999988887553
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.01 E-value=0.15 Score=41.80 Aligned_cols=110 Identities=11% Similarity=-0.114 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 010739 344 HERLLAMYICAGRGLEAERQLWEMKLVGKEAD--------G-----DLYDIVLAICASQNEGSAVSRLLSRIEVM----- 405 (502)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~-----~t~~~li~~~~~~~~~~~a~~l~~~m~~~----- 405 (502)
+...-..+.+.|++++|...|++..+. .|+ . ..|+.+-.++.+.|++++|...++.....
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344444455566666666666655432 222 1 25555556666666666666666555443
Q ss_pred CCCC-CHHHH----HHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHH
Q 010739 406 NSLC-KKKTL----SWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDRVAVLQG 455 (502)
Q Consensus 406 ~~~p-~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~~ 455 (502)
.+.| +...| ...-.++...|++++|+..|++.++ .|+.+........+..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 1234 34456 6777888889999999999998764 4566655554444443
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.93 E-value=0.076 Score=40.67 Aligned_cols=80 Identities=8% Similarity=-0.149 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 010739 132 CALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAV 211 (502)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 211 (502)
.|++.|+...+....+...+..+-..+. ..|++++|...|++..+.. +.+...|..+-..|.+.|++++|.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYA--------EHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5778888887776457778887777677 8999999999999988753 335778999999999999999999
Q ss_pred HHHHHHHHc
Q 010739 212 LFVKAVLSR 220 (502)
Q Consensus 212 ~l~~~m~~~ 220 (502)
..|++..+.
T Consensus 74 ~~~~~al~~ 82 (115)
T 2kat_A 74 QAWESGLAA 82 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987653
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.78 E-value=0.076 Score=50.84 Aligned_cols=90 Identities=11% Similarity=-0.116 Sum_probs=62.2
Q ss_pred hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010739 340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLL 418 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li 418 (502)
+...|+.+-.+|.+.|++++|...+++..+. .| +...|..+-.++...|++++|.+.++....... -+...+..+-
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 3457777777888888888888888887753 34 455666666788888888888888877766541 2455556666
Q ss_pred HHHHhCCCHHHHHH
Q 010739 419 RGYIKGGHINDAAE 432 (502)
Q Consensus 419 ~~~~~~g~~~~A~~ 432 (502)
..+.+.++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.72 E-value=0.073 Score=43.76 Aligned_cols=96 Identities=8% Similarity=-0.098 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHc------------------CCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKE------------------NRVDNETMELMVSIMCSWVKKYIEEERGVGDVVD 177 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~------------------~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~ 177 (502)
+...-..+.+.|++ +.|++.|....+. ...+...|..+-.++. +.|++++|+.
T Consensus 14 ~~~~G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--------~~~~~~~A~~ 84 (162)
T 3rkv_A 14 LRQKGNELFVQKDY-KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL--------NIGDLHEAEE 84 (162)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH--------HHTCHHHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH--------hcCcHHHHHH
Confidence 55566677788888 7999988887765 1112345665555555 8999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 178 LLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 178 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.++...+.. +.+...|..+-.+|...|++++|...|++..+..
T Consensus 85 ~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 85 TSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 999988863 3467899999999999999999999999987764
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.59 E-value=0.39 Score=38.30 Aligned_cols=81 Identities=10% Similarity=-0.159 Sum_probs=37.8
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS----QN 390 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~ 390 (502)
+.+++|.+.|++..+.+.+ ..+..|-..|.. .++.++|+..|++-.+.| +...+..+-..|.. .+
T Consensus 39 ~~~~~A~~~~~~Aa~~g~~----~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 39 INKQKLFQYLSKACELNSG----NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp SCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHcCCCH----HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCc
Confidence 4444455555444444321 244444444444 455555555555555443 23333333344444 45
Q ss_pred ChhHHHHHHHHHHHcC
Q 010739 391 EGSAVSRLLSRIEVMN 406 (502)
Q Consensus 391 ~~~~a~~l~~~m~~~~ 406 (502)
+.++|.+.++...+.|
T Consensus 112 d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 112 NEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5555555555544444
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.48 E-value=0.25 Score=35.37 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
.|..+-..+.+.|++++|...|++..+.. ..+...+..+-..+...|++++|.+.++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444445555555555555444321 112233333333444444444444444333
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.35 E-value=0.051 Score=51.32 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739 378 LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR 457 (502)
Q Consensus 378 t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 457 (502)
.|..+-.++.+.|++++|...++...... ..+...|..+-.+|...|++++|...|++..+ +.|+.......+..+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 56666677888888888888887776654 23677777888888888888888888888654 3354333322233221
Q ss_pred ccccccccHHHHHHHHhhhh
Q 010739 458 KRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 458 ~~~~~~~~~~~a~~~~~~m~ 477 (502)
. ...+..+.+...+..|.
T Consensus 309 ~--~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 309 E--QEKALYQKQKEMYKGIF 326 (338)
T ss_dssp --------------------
T ss_pred H--HHHHHHHHHHHHHHHhh
Confidence 1 01344555555655553
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.33 E-value=0.08 Score=39.55 Aligned_cols=56 Identities=13% Similarity=-0.069 Sum_probs=35.9
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
+-..|.+ |++++|.+.|++.........+ .|..+-.+|.+.|++++|...|++..+
T Consensus 13 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 13 LAQEHLKHDNASRALALFEELVETDPDYVG--TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTH--HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555 7777777777766665543333 666677777777777777777766543
No 196
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.25 E-value=1.2 Score=47.18 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=99.4
Q ss_pred HHhCcHHHHHH-HHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739 245 MVEGKYVDAIK-LVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA 322 (502)
Q Consensus 245 ~~~g~~~~a~~-~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~ 322 (502)
+..+++++|.+ ++.. + |+......++..+.+. +..++|+++.++- . .-...... |+++
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~-~~~~~a~~~~~~~---------~----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQ-EYYEEALNISPDQ---------D----QKFELALKVGQLT 669 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHT-TCHHHHHHHCCCH---------H----HHHHHHHHHTCHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhC-CChHHheecCCCc---------c----hheehhhhcCCHH
Confidence 44688888877 5522 1 1122236677777778 7888887755321 1 12233445 9999
Q ss_pred hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
+|+++.+. .. +...|..+-..+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+..
T Consensus 670 ~A~~~~~~-----~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 670 LARDLLTD-----ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHTT-----CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh-----hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 99997532 22 345999999999999999999999998863 445555666677777766665555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 403 EVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
...| -++.-...|.+.|++++|.+++.++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5544 2344455566677777777777654
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.22 E-value=0.14 Score=39.14 Aligned_cols=26 Identities=15% Similarity=-0.111 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
.|..+-..|.+.|++++|...|++..
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al 46 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAAL 46 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444444555555554444444
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.041 Score=41.60 Aligned_cols=62 Identities=11% Similarity=-0.111 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 378 LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 378 t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
.+..+-..+...|++++|.+.++...... ..+...+..+-..|.+.|++++|.+.|++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33444444555555555555555444433 124455555666666666666666666666543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.11 Score=39.04 Aligned_cols=54 Identities=11% Similarity=-0.084 Sum_probs=30.1
Q ss_pred HHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739 314 EKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL 369 (502)
Q Consensus 314 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 369 (502)
..+.. |++++|.+.|++........ ...|..+-.+|.+.|++++|...+++..+
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444 66666666665555443222 23555666666666666666666666553
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.93 E-value=0.074 Score=50.20 Aligned_cols=127 Identities=6% Similarity=-0.124 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChH------------------HHHHHHHHHhhhhhhhhhhhccHhhHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNE------------------TMELMVSIMCSWVKKYIEEERGVGDVVD 177 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------------------~~~~li~~~~~~~~~~~~~~~~~~~a~~ 177 (502)
+..+-..+.+.|++ +.|...|+...+.. |+.. .|..+-.++. +.|++++|+.
T Consensus 182 ~~~~g~~~~~~g~~-~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~--------~~g~~~~A~~ 251 (338)
T 2if4_A 182 RKMDGNSLFKEEKL-EEAMQQYEMAIAYM-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLI--------KLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHTCSSSCC-HHHHHHHHHHHHHS-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH--------TTTCCHHHHH
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHHh-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHH--------HcCCHHHHHH
Confidence 55666677788999 89999999987665 3222 5555555555 8999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHH-HHHhCcHHHHHH
Q 010739 178 LLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWK-MMVEGKYVDAIK 255 (502)
Q Consensus 178 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~-~~~~g~~~~a~~ 255 (502)
.+++..+.. +-+...|..+-.+|...|++++|...|++..+.. |+.. .+.. +... ....+..+++.+
T Consensus 252 ~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~--------L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 252 HCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRE--------LRALAEQEKALYQKQKE 320 (338)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 999988753 3467899999999999999999999999876443 3321 1111 1111 123466777777
Q ss_pred HHHHHHHc
Q 010739 256 LVIHLRES 263 (502)
Q Consensus 256 ~~~~m~~~ 263 (502)
+|..|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 88777643
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.78 E-value=1.2 Score=41.96 Aligned_cols=38 Identities=16% Similarity=-0.072 Sum_probs=24.3
Q ss_pred CCCCHhHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCc
Q 010739 265 LKPEVYSYLIALTAVVKE----LNEFGKALRKLKGYVRAGSIAE 304 (502)
Q Consensus 265 ~~p~~~ty~~li~~~~~~----~~~~~~a~~~~~~m~~~g~~p~ 304 (502)
.+.+...|...+.+.... ..+..+|..+|++-++. +|+
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~ 231 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE 231 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC
Confidence 456777788888776543 13467788877777543 454
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.72 E-value=0.41 Score=39.25 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=26.5
Q ss_pred Hhc-CcHHhHHHHHHHHHHc----C-CCCchHhHH----HHHHHHHHHcCChHHHHHHHHHHH
Q 010739 316 YQS-DLLADGSRLSSWAIQE----G-GSSLYGVVH----ERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 316 ~~~-g~~~~a~~~~~~m~~~----~-~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
+.+ |++++|+..+++.+.. + ..+.+...| ...-.++...|++++|+..|++..
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 444 5555555544444432 1 122333455 555556666666666666666544
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.54 E-value=0.27 Score=36.49 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=25.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739 384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 438 (502)
..+...|++++|.+.++....... .+...|..+-.+|.+.|++++|.+.|++.+
T Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444333321 133344455555555555555555555543
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.47 E-value=2.6 Score=42.71 Aligned_cols=151 Identities=12% Similarity=0.036 Sum_probs=103.9
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhcc----------HhhHHHHHHHHhhCCCCCCHH
Q 010739 123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERG----------VGDVVDLLVDMDCVGLKPGFS 192 (502)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~ 192 (502)
..+.|..+++|++.++.+.....-+...|+.--.++. ..++ +++++.+++.+.+..-+ +..
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~--------~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~ 108 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQ--------HLETEKSPEESAALVKAELGFLESCLRVNPK-SYG 108 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH--------hcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHH
Confidence 3445556589999999999888446667776544333 3344 89999999999886443 778
Q ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hC-cHHHHHHHHHHHHHcC
Q 010739 193 MIEKVISLYWEME--KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EG-KYVDAIKLVIHLRESG 264 (502)
Q Consensus 193 ~y~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g-~~~~a~~~~~~m~~~g 264 (502)
+|+.--..+.+.| +++++.+.++.+.+.+. .++..|++-. .| .++++++.++++.+..
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~--------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADE--------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhcc--------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 8888888888889 77999999999998762 2235555432 46 7889999888887652
Q ss_pred CCCCHhHHHHHHHHHHhcc-------------ccHHHHHHHHHHHH
Q 010739 265 LKPEVYSYLIALTAVVKEL-------------NEFGKALRKLKGYV 297 (502)
Q Consensus 265 ~~p~~~ty~~li~~~~~~~-------------~~~~~a~~~~~~m~ 297 (502)
.-|...|+..-..+.+.. +.++++++.+++..
T Consensus 175 -p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 175 -FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp -CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred -CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHH
Confidence 235566666555555520 34566666665553
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.47 E-value=0.4 Score=34.20 Aligned_cols=78 Identities=5% Similarity=-0.059 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE 195 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~ 195 (502)
+..+-..+.+.|++ +.|...|+...+....+...+..+-..+. ..|++++|...|++..+.. +-+...+.
T Consensus 12 ~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 81 (91)
T 1na3_A 12 WYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYY--------KQGDYDEAIEYYQKALELD-PNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 55556666777777 68888887777665345566666666555 6778888888777776642 22445555
Q ss_pred HHHHHHHh
Q 010739 196 KVISLYWE 203 (502)
Q Consensus 196 ~li~~~~~ 203 (502)
.+-..+.+
T Consensus 82 ~l~~~~~~ 89 (91)
T 1na3_A 82 NLGNAKQK 89 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.43 E-value=0.45 Score=50.43 Aligned_cols=150 Identities=15% Similarity=0.058 Sum_probs=89.7
Q ss_pred hhccHhhHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH
Q 010739 168 EERGVGDVVD-LLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV 246 (502)
Q Consensus 168 ~~~~~~~a~~-~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~ 246 (502)
..+++++|.+ ++.. ++ +......++..+.+.|.++.|.++.++-.. -..-.+.
T Consensus 611 ~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------------------~f~~~l~ 664 (814)
T 3mkq_A 611 LRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQDQ--------------------KFELALK 664 (814)
T ss_dssp HTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------------------HHHHHHH
T ss_pred HhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcch--------------------heehhhh
Confidence 4678888876 5422 11 122347888888899999998877643211 1233345
Q ss_pred hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHH
Q 010739 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGS 325 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~ 325 (502)
.|++++|+++.+.+ .+...|..+-..+.+. ++++.|.+.|..+.+. . .+...|.. |+.+...
T Consensus 665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~-~~~~~A~~~y~~~~d~---------~-~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 665 VGQLTLARDLLTDE------SAEMKWRALGDASLQR-FNFKLAIEAFTNAHDL---------E-SLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTCH---------H-HHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc-CCHHHHHHHHHHccCh---------h-hhHHHHHHcCCHHHHH
Confidence 68999998886543 4667888888888888 7888888877765211 1 24444444 5555544
Q ss_pred HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010739 326 RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEM 367 (502)
Q Consensus 326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 367 (502)
++-+.....+ -++....+|.+.|++++|.+++.++
T Consensus 728 ~~~~~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 728 TLAKDAETTG-------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcC-------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4433333322 2233334455566666666555443
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.39 E-value=0.24 Score=48.34 Aligned_cols=92 Identities=8% Similarity=-0.062 Sum_probs=62.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHH-----HcCC-CC-CHHH
Q 010739 348 LAMYICAGRGLEAERQLWEMKLVG---KEAD----GDLYDIVLAICASQNEGSAVSRLLSRIE-----VMNS-LC-KKKT 413 (502)
Q Consensus 348 i~~~~~~g~~~~A~~l~~~m~~~g---~~p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~-----~~~~-~p-~~~~ 413 (502)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|..+++... ..|. .| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556777888888877776431 2222 3467777778888888888888776442 2331 23 2456
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 414 LSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
++.|-..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788899999999999999988654
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.36 E-value=0.16 Score=49.54 Aligned_cols=50 Identities=4% Similarity=-0.133 Sum_probs=31.8
Q ss_pred CcHHhHHHHHHHHHHcC-----CC-CchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 319 DLLADGSRLSSWAIQEG-----GS-SLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
|++++|+.++++..... .. +.-..+++.|...|...|++++|+.++++..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 67777777776655422 11 1123467777777777777777777777654
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.84 E-value=4.2 Score=37.82 Aligned_cols=143 Identities=10% Similarity=0.021 Sum_probs=92.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhh---hhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 010739 122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKY---IEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVI 198 (502)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li 198 (502)
...+.|..+++|+++++.+.....-+...||.--..+.. +..- ......+++++.+++.+....- -+..+|+.--
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~ 115 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 115 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345667776899999999998873455667654443321 1000 0001227888999998887533 3778888877
Q ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hCc-HHHHHHHHHHHHHcCCCCCHh
Q 010739 199 SLYWEME--KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EGK-YVDAIKLVIHLRESGLKPEVY 270 (502)
Q Consensus 199 ~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g~-~~~a~~~~~~m~~~g~~p~~~ 270 (502)
..+.+.| +++++..+++.+.+.+ +.++..|++-. .|. ++++++.++.+.... .-|..
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d--------------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~S 180 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD--------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYS 180 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHH
Confidence 7777878 4899999999998876 22335555433 366 688888888888763 23455
Q ss_pred HHHHHHHHHHh
Q 010739 271 SYLIALTAVVK 281 (502)
Q Consensus 271 ty~~li~~~~~ 281 (502)
.|+..-..+.+
T Consensus 181 AW~~R~~ll~~ 191 (331)
T 3dss_A 181 SWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554444433
No 210
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.63 E-value=2.1 Score=33.70 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=80.6
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLA 322 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~ 322 (502)
...|.+++..++..+.... -+..-||.+|.-.... -+-+-..++++.. .-..+.+-.-.- .++..|.+ |..
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~-a~C~y~v~vLd~IGkiFDis~C~NlK--rVi~C~~~~n~~- 90 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLES-IDCRYMFQVLDKIGSYFDLDKCQNLK--SVVECGVINNTL- 90 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHH-CCHHHHHHHHHHHGGGSCGGGCSCTH--HHHHHHHHTTCC-
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchh-hchhHHHHHHHHHhhhcCcHhhhcHH--HHHHHHHHhcch-
Confidence 4568999999998887765 3566788888877777 5677666665554 212221111110 23444433 211
Q ss_pred hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
....+..++.+...|+-++-.+++.++.. ..+|+....-.+-.+|.+.|+..++.+++.+.
T Consensus 91 ------------------se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 91 ------------------NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp ------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 12445556666677777777777766432 34555566666666777777777776666666
Q ss_pred HHcCC
Q 010739 403 EVMNS 407 (502)
Q Consensus 403 ~~~~~ 407 (502)
-+.|.
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 55554
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.45 E-value=0.33 Score=47.32 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHHHHHc---CCC---CC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCc
Q 010739 248 GKYVDAIKLVIHLRES---GLK---PE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDL 320 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~---g~~---p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~ 320 (502)
|++++|+.++++.... -+. |+ ..+++.+..+|... |++++|+.++++....
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i--------------------- 369 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKP--------------------- 369 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH---------------------
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHH---------------------
Confidence 6777887777765542 122 22 35677777777777 6777777766654211
Q ss_pred HHhHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 321 LADGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
++ ...| ..+....+|+.|-..|...|++++|+.++++..
T Consensus 370 -------~~--~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 370 -------YS--KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp -------HH--HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HH--HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 00 0112 111223577888888888888888888887654
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.42 E-value=0.21 Score=40.96 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=69.5
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhcc----------HhhHHHHHHHHhhCCCCCCHHH
Q 010739 124 SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERG----------VGDVVDLLVDMDCVGLKPGFSM 193 (502)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~ 193 (502)
.|.+.+ ++|.+.++...+...-+...|+.+-.++. ..++ +++|+..|++..+..-. +...
T Consensus 13 ~r~~~f-eeA~~~~~~Ai~l~P~~aea~~n~G~~l~--------~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A 82 (158)
T 1zu2_A 13 DRILLF-EQIRQDAENTYKSNPLDADNLTRWGGVLL--------ELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEA 82 (158)
T ss_dssp HHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHhHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHH
Confidence 344557 78999999998888557888887766665 4443 56999999998885322 5678
Q ss_pred HHHHHHHHHhcC-----------cHHHHHHHHHHHHHcCCCCCC
Q 010739 194 IEKVISLYWEME-----------KKERAVLFVKAVLSRGIAYAE 226 (502)
Q Consensus 194 y~~li~~~~~~g-----------~~~~A~~l~~~m~~~~~~p~~ 226 (502)
|..+-.+|...| ++++|.+.|++..+.+ |+.
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~ 124 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCC
Confidence 999999998874 8999999999988765 553
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.37 E-value=0.33 Score=39.76 Aligned_cols=109 Identities=7% Similarity=-0.045 Sum_probs=61.2
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
+.+++|.+.+++.+.......+ .|+.+-.++.+.++++.+.+-.+ .+++|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~ae--a~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~~ 68 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDAD--NLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHHH
Confidence 5677777777777766544433 66666666666655442221111 13444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKG-----------GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR 457 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 457 (502)
|+....... -+...|..+-.+|... |++++|.+.|++.++. .|+...|...+..+-
T Consensus 69 le~AL~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 69 FEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 444444331 1344444555555443 5788888888887763 577766666655553
No 214
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.28 E-value=2.6 Score=42.66 Aligned_cols=116 Identities=4% Similarity=-0.140 Sum_probs=74.6
Q ss_pred HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHH
Q 010739 321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAG--RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN-EGSAVSR 397 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~ 397 (502)
++++.+.++.+........ .+|+.---.+.+.| +++++++.++++.+...+ |...|+---..+.+.| ..+++.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y--~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSY--GTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence 6777777777666554443 36666666666667 568888888887765422 5666666666666667 6777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHC
Q 010739 398 LLSRIEVMNSLCKKKTLSWLLRGYIKG--------------GHINDAAETLTKMLDL 440 (502)
Q Consensus 398 l~~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~ 440 (502)
.++.+.+.... |...|+..-..+.+. +.+++|++.+++.+..
T Consensus 166 ~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 77666655422 566666644444431 4578888888887764
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.16 E-value=2.5 Score=33.24 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010739 375 DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGL 442 (502)
Q Consensus 375 ~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 442 (502)
+...++..++.....|.-++..++...+.. +..|+....-.+-.+|.+-|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444556666666777777776666666432 4456666666677777777777777777777666665
No 216
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.78 E-value=1.9 Score=35.88 Aligned_cols=123 Identities=12% Similarity=0.096 Sum_probs=87.0
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
|+++.|.++.+.+ .+...|..|-....+.|+++-|.+.|.+... |..+.-.|...|+.+...++
T Consensus 19 g~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 19 GNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp TCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 8999998887654 2346999999999999999999999998762 45566666677888876666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
-+.....| -++.-...+.-.|+++++.++|.+ .|--|.... -+ +. .|--+.|.++.+++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~-----~A--~t---~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYA-----VA--KA---NGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHH-----HH--HH---TTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHH-----HH--HH---cCcHHHHHHHHHHh
Confidence 65555555 356667777888999999999865 343332221 11 11 46667777777665
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.75 E-value=1.9 Score=40.64 Aligned_cols=150 Identities=7% Similarity=-0.132 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhh-CC
Q 010739 113 ARELQLVLVYFSQEG-----RDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDC-VG 186 (502)
Q Consensus 113 ~~~~~~ll~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~-~g 186 (502)
+..|...+.+..... .. .+|.++|++..+...-....|..+.-++...................-++.... ..
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~-~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSL-NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 445777776655432 23 588999999998872244455543333331111000001111111111221111 12
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC
Q 010739 187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK 266 (502)
Q Consensus 187 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~ 266 (502)
.+.+..+|.++--.+.-.|++++|...+++..+.+ |+...|.. +-+.....|++++|.+.|++-... .
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~l--------lG~~~~~~G~~~eA~e~~~~AlrL--~ 340 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVL--------LGKVYEMKGMNREAADAYLTAFNL--R 340 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 35577888888777777899999999999998887 66444433 455556689999999999876654 6
Q ss_pred CCHhHHHHH
Q 010739 267 PEVYSYLIA 275 (502)
Q Consensus 267 p~~~ty~~l 275 (502)
|...||...
T Consensus 341 P~~~t~~~~ 349 (372)
T 3ly7_A 341 PGANTLYWI 349 (372)
T ss_dssp CSHHHHHHH
T ss_pred CCcChHHHH
Confidence 776666443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.38 E-value=0.58 Score=45.61 Aligned_cols=94 Identities=7% Similarity=-0.109 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC----CC-Ch---HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC---
Q 010739 117 QLVLVYFSQEGRDSWCALEVFEWLKKEN----RV-DN---ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV--- 185 (502)
Q Consensus 117 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~----~~-~~---~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~--- 185 (502)
...+..+.+.|++ ++|+++++...+.. .+ ++ .+++.+...+. ..|++++|..++++..+.
T Consensus 291 l~~ie~~~~~g~~-~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~--------~~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 291 LKKIEELKAHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI--------NLGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccH-HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHhHHH
Confidence 3446667788999 89999999887542 22 22 36777777666 899999999999987653
Q ss_pred --C-CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010739 186 --G-LKPG-FSMIEKVISLYWEMEKKERAVLFVKAVLS 219 (502)
Q Consensus 186 --g-~~p~-~~~y~~li~~~~~~g~~~~A~~l~~~m~~ 219 (502)
| -.|+ ..+|+.|-..|...|++++|+.++++..+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 2333 36899999999999999999999987753
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.25 E-value=2 Score=34.67 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHH
Q 010739 358 LEAERQLWEMKLVGKEADGDLYDIVLAICASQN---EGSAVSRLLSRIEVMNSLC--KKKTLSWLLRGYIKGGHINDAAE 432 (502)
Q Consensus 358 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~---~~~~a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 432 (502)
..+.+-|.+....|- ++..+--.+-.++++++ +++++..+++...... .| +...+-.|--+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555444 56665555566666666 5557777777766654 23 34455557777888888888888
Q ss_pred HHHHHHHC
Q 010739 433 TLTKMLDL 440 (502)
Q Consensus 433 l~~~m~~~ 440 (502)
.++..++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88887763
No 220
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=90.81 E-value=5.9 Score=35.22 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=95.4
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFS---MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~ 244 (502)
+.|+++.+..+++ .|..++.. .-.+.+...++.|+.+-+ +.+.+.|..|+....+. .+ .+..+
T Consensus 14 ~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g-----~t-~L~~A 79 (285)
T 1wdy_A 14 QNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNG-----AT-PFLLA 79 (285)
T ss_dssp HTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTC-----CC-HHHHH
T ss_pred HcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCC-----CC-HHHHH
Confidence 6788776666554 44433321 112455566777876544 44456676666433221 11 45555
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh-------------ch
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEVY---SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD-------------GK 308 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~~---ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------------~~ 308 (502)
+..|+.+ +++.+.+.|..++.. -++.+ ...+.. +..+- ++.+.+.|..++.. ..
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~-~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNECDFYGFTAF-MEAAVY-GKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCBCTTCCBHH-HHHHHT-TCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHcCCHH----HHHHHHHcCCCCCccCcccCCHH-HHHHHh-CCHHH----HHHHHHhCCCcccccccHHHHHhhccCCC
Confidence 5667754 444455566665532 22333 334444 44443 33445566655433 11
Q ss_pred HHHHHHHHhcCcHHhHHHHHHHHHHcCC--CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHH
Q 010739 309 NLGLIEKYQSDLLADGSRLSSWAIQEGG--SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVLA 384 (502)
Q Consensus 309 ~~~li~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~ 384 (502)
+ .|..+...|+.+-+..+++. .+. ...+...++ .+...+..|......++++.+.+.|..++... -.+.+.
T Consensus 150 t-~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 150 T-ALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRN-ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp C-HHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCC-HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred c-HHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCC-HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 1 34444444666555444321 121 111111222 23333445555555566666666766554321 123344
Q ss_pred HHHhcCChhHHHHHH
Q 010739 385 ICASQNEGSAVSRLL 399 (502)
Q Consensus 385 ~~~~~~~~~~a~~l~ 399 (502)
..+..|+.+-+..++
T Consensus 225 ~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 444456555544333
No 221
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=90.60 E-value=11 Score=35.04 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=103.0
Q ss_pred hccH-hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHcCCCCCCccccccCCCCc
Q 010739 169 ERGV-GDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK----------KERAVLFVKAVLSRGIAYAEGDGEGQQGGPT 237 (502)
Q Consensus 169 ~~~~-~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~ 237 (502)
.|.+ ++|+.+++.+....- -+..+||.-=..+...|+ ++++..+++.+...+ |.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--------------PK 106 (331)
T 3dss_A 42 AGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------------PK 106 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------TT
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--------------CC
Confidence 3444 478888888877432 234455543333333222 678888888888765 22
Q ss_pred hHHHHHHHH-----hC--cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcccc-HHHHHHHHHHHHHcCCCCchhchH
Q 010739 238 GYLAWKMMV-----EG--KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNE-FGKALRKLKGYVRAGSIAELDGKN 309 (502)
Q Consensus 238 ~~~~~~~~~-----~g--~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~ 309 (502)
++-+|++-. -| .+++++++++.+.+.. .-|...|+.---.+.+. +. .+++++.++.+++.... |...++
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~-N~SAW~ 183 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS-NYSSWH 183 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSC-CHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence 335554433 35 4889999999988762 33556666665566666 45 68888888888655322 222222
Q ss_pred --HHHHHHHhc------------CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc-----------CChHHHHHHH
Q 010739 310 --LGLIEKYQS------------DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA-----------GRGLEAERQL 364 (502)
Q Consensus 310 --~~li~~~~~------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~ 364 (502)
..++..... +.++++++.+.......... ...|+-+-..+.+. +.++++++.+
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d--~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND--QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 123333311 34667777777666654333 34665544444443 3455666666
Q ss_pred HHHHH
Q 010739 365 WEMKL 369 (502)
Q Consensus 365 ~~m~~ 369 (502)
+++.+
T Consensus 262 ~elle 266 (331)
T 3dss_A 262 KELQE 266 (331)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.22 E-value=1.5 Score=31.88 Aligned_cols=56 Identities=13% Similarity=0.012 Sum_probs=40.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCChH-HHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC
Q 010739 121 VYFSQEGRDSWCALEVFEWLKKENRVDNE-TMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV 185 (502)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 185 (502)
..+.+.|++ +.|.+.|+...+....+.. .|..+-.++. ..|++++|...|++..+.
T Consensus 8 ~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYR--------KLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhc
Confidence 445667788 7888888888777634556 6666666555 788888888888887765
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.15 E-value=2.5 Score=30.55 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=25.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 387 ASQNEGSAVSRLLSRIEVMNSLCKKK-TLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 387 ~~~~~~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
...|++++|.+.++...... ..+.. .+..+-..|...|++++|.+.|++..+
T Consensus 11 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555554444332 11233 444455555555555555555555544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.13 E-value=7.1 Score=32.36 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=71.4
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 010739 124 SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE 203 (502)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 203 (502)
.+.|++ +.|.++.+.+ -+...|..|-..+. ..|+++-|.+.|..... +..+.=.|.-
T Consensus 16 L~lg~l-~~A~e~a~~l-----~~~~~Wk~Lg~~AL--------~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~ 72 (177)
T 3mkq_B 16 LEYGNL-DAALDEAKKL-----NDSITWERLIQEAL--------AQGNASLAEMIYQTQHS---------FDKLSFLYLV 72 (177)
T ss_dssp HHTTCH-HHHHHHHHHH-----CCHHHHHHHHHHHH--------HTTCHHHHHHHHHHTTC---------HHHHHHHHHH
T ss_pred HhcCCH-HHHHHHHHHh-----CCHHHHHHHHHHHH--------HcCChHHHHHHHHHhCC---------HHHHHHHHHH
Confidence 345778 7888887766 46778998888777 88999999998887654 5566666777
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHH
Q 010739 204 MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHL 260 (502)
Q Consensus 204 ~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m 260 (502)
.|+.+...++-+.-..+| .++ ....+++..|+++++.++|.+.
T Consensus 73 tg~~e~L~kla~iA~~~g------~~n--------~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 73 TGDVNKLSKMQNIAQTRE------DFG--------SMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HTCHHHHHHHHHHHHHTT------CHH--------HHHHHHHHHTCHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHCc------cHH--------HHHHHHHHcCCHHHHHHHHHHC
Confidence 888877776665555554 111 2455566679999999888543
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.91 E-value=3.7 Score=33.16 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc---cHhhHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCc
Q 010739 132 CALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER---GVGDVVDLLVDMDCVGLKP--GFSMIEKVISLYWEMEK 206 (502)
Q Consensus 132 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~y~~li~~~~~~g~ 206 (502)
.+.+-|.+....+.++..+--.+--+++ +.+ ++++++.+|++..+.+ .| +...+=.|--+|.+.|+
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv--------~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLV--------RSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHH--------TCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 4444555555556556654443333355 555 8889999999998875 24 23333345556699999
Q ss_pred HHHHHHHHHHHHHcC
Q 010739 207 KERAVLFVKAVLSRG 221 (502)
Q Consensus 207 ~~~A~~l~~~m~~~~ 221 (502)
+++|.+.++...+..
T Consensus 87 Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 87 YEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998765
No 226
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.63 E-value=9.8 Score=39.63 Aligned_cols=128 Identities=11% Similarity=-0.074 Sum_probs=80.8
Q ss_pred CchHHHHHHHH----hCc-HHHHHHHHHHHHHcCCCCCHhH-H-HHHHHHHHhccccHHHHHHHHHHHHHc------CCC
Q 010739 236 PTGYLAWKMMV----EGK-YVDAIKLVIHLRESGLKPEVYS-Y-LIALTAVVKELNEFGKALRKLKGYVRA------GSI 302 (502)
Q Consensus 236 ~~~~~~~~~~~----~g~-~~~a~~~~~~m~~~g~~p~~~t-y-~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~ 302 (502)
..++++.+.++ .|+ ++.|.++|+++... .|...+ | ..+|..+.+.+.+--+|.+++++..+. ...
T Consensus 246 v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~ 323 (754)
T 4gns_B 246 VNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLP 323 (754)
T ss_dssp SSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhc
Confidence 33456555554 355 68899999999887 343322 2 334444444423455677777666421 122
Q ss_pred Cchh------chHHHHHHH----Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010739 303 AELD------GKNLGLIEK----YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEM 367 (502)
Q Consensus 303 p~~~------~~~~~li~~----~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 367 (502)
+... .+...|+.. +.+ |+++-|+++-++.+..... +-.+|-.|...|.+.|+++.|+-.++.+
T Consensus 324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1110 111123322 444 9999999998887765443 4569999999999999999999998887
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.02 E-value=3.2 Score=30.85 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=45.6
Q ss_pred hhccHhhHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 168 EERGVGDVVDLLVDMDCVG------LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g------~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
+.+++..|..+|+...+.- -.+....|..|..+|.+.|+++.|...+++..+..
T Consensus 17 ~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 8899999999999876631 23467889999999999999999999999987654
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.72 E-value=4 Score=36.96 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCC
Q 010739 341 GVVHERLLAMYICA-----GRGLEAERQLWEMKLVGKEA--DGDLYDIVLAICASQ-NEGSAVSRLLSRIEVMNSL 408 (502)
Q Consensus 341 ~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~-~~~~~a~~l~~~m~~~~~~ 408 (502)
...|..+...|.+. |+.++|...|++-.+- .| +..++...-+.++.. |+.+++.+.++........
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34555555555552 5566666666555542 23 234444444444442 5555555555555444433
No 229
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=87.52 E-value=2.5 Score=37.76 Aligned_cols=109 Identities=10% Similarity=-0.018 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cc--cccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHh-
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DG--EGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVY- 270 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty--~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~- 270 (502)
++.+...++.|+++.+..++ +.|..++.. .. .+ .+..++..|+.+ +++.+.+.|..|+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t--------~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~ 69 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWT--------PLHNAVQMSRED----IVELLLRHGADPVLRK 69 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCC--------HHHHHHHTTCHH----HHHHHHHTTCCTTCCC
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCc--------HHHHHHHcCCHH----HHHHHHHcCCCCcccC
Confidence 34556668888877555554 556555433 11 12 456666677764 444455566665532
Q ss_pred --HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh---chHHHHHHHHhcCcHHhHHH
Q 010739 271 --SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD---GKNLGLIEKYQSDLLADGSR 326 (502)
Q Consensus 271 --ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~~li~~~~~g~~~~a~~ 326 (502)
-.+.+ ...+.. +..+- ++.+.+.|..++.. ..+ .+..+...|+.+-+..
T Consensus 70 ~~g~t~L-~~A~~~-~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~ 123 (285)
T 1wdy_A 70 KNGATPF-LLAAIA-GSVKL----LKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKF 123 (285)
T ss_dssp TTCCCHH-HHHHHH-TCHHH----HHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHH
T ss_pred CCCCCHH-HHHHHc-CCHHH----HHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHH
Confidence 22333 333444 34443 34445566655432 222 3444444465544333
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.65 E-value=7.4 Score=28.24 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739 375 DGDLYDIVLAICASQNE---GSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG 441 (502)
Q Consensus 375 ~~~t~~~li~~~~~~~~---~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 441 (502)
|...+..+-.++...++ .++|..+++...... .-+......+-..+.+.|++++|...|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 33444444444433333 567777777666654 2255566667777788888888888888887654
No 231
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.18 E-value=22 Score=32.46 Aligned_cols=167 Identities=11% Similarity=0.013 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHH----HHHHHHHcCCCCC
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIK----LVIHLRESGLKPE 268 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~----~~~~m~~~g~~p~ 268 (502)
.|.++..-|.+.+++++|.+++.+= ...+...|+...|-+ +.+...+.++++|
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~ 91 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD 91 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence 5778888899999999999987543 344445566555554 4666667799999
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHH----HcCCC--CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYV----RAGSI--AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYG 341 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~----~~g~~--p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~ 341 (502)
.....-++..+...+.....-.+++++++ +.|-. -+..... .+-..|.+ |++.+|+..|- .+. ..|.
T Consensus 92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~-~~a~~~~~e~~~~~A~~H~i----~~~-~~s~ 165 (312)
T 2wpv_A 92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHN-TIGSKLLEGDFVYEAERYFM----LGT-HDSM 165 (312)
T ss_dssp HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHH-HHHHHHHHTTCHHHHHHHHH----TSC-HHHH
T ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHH----hCC-CccH
Confidence 98888888877664211111233344442 23221 2333333 46666788 99999999772 111 1134
Q ss_pred hHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739 342 VVHERLLAMYICA---GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIE 403 (502)
Q Consensus 342 ~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~ 403 (502)
..+..++.-+.+. |...++--+. -.++|..+ ..+++..|..+++...
T Consensus 166 ~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~RaVL~yL-~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 166 IKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRLVFNYL-FISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHHHHHHH-HTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHH--------------HHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 4666655555554 5544432222 22333333 4578888888886543
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.74 E-value=10 Score=36.03 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=46.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 010739 381 IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDRVAV 452 (502)
Q Consensus 381 ~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 452 (502)
.++.++...|+.+++...+..+.... ..+...|..+|.+|.+.|+..+|++.|++..+ .|+.|...+-...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34455556677777776666665443 33666777788888888888888777777653 3777777764433
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.56 E-value=7.6 Score=28.68 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
++.+-++.+....+.|+.....+.+.+|-+..++..|.++++..+..- .+...+|.++++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444555555555666666666666666666666666666666665433 222334555544
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=83.44 E-value=9.7 Score=28.06 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 410 KKKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
....+..|..+|.+.|++++|...+++...
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 455666677777777777777777777654
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.17 E-value=3.9 Score=30.23 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=44.4
Q ss_pred cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 171 GVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
+.-+..+-++.+-...+.|+..+..+.+++|-|.+|+..|.++|+..+.+-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455667777777788899999999999999999999999999999998553
No 236
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=83.03 E-value=11 Score=32.37 Aligned_cols=62 Identities=10% Similarity=-0.044 Sum_probs=33.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 197 VISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
.+...++.|+.+-+..+++.+.+.+..++...... .+ .+..++..|+.+ +++.+.+.|..|+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g-----~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~ 73 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR-----QT-PLHLAVITTLPS----VVRLLVTAGASPM 73 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS-----CC-HHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC-----CC-HHHHHHHcCCHH----HHHHHHHcCCCcc
Confidence 34455677777777777777766666655433211 01 344455556654 3334444555544
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=82.94 E-value=8.2 Score=27.99 Aligned_cols=70 Identities=9% Similarity=-0.019 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 146 VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
.|+..+..+-.++.. .......++|..+|++..+..- -+......+-..+.+.|++++|...|+.+.+.+
T Consensus 4 ~~~~~~~~~a~al~~-----~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYY-----LHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHH-----TTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355666666555541 0012236899999999888532 366778888899999999999999999998776
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=82.76 E-value=12 Score=33.75 Aligned_cols=91 Identities=11% Similarity=-0.009 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHH
Q 010739 358 LEAERQLWEMKLVGKEAD---GDLYDIVLAICAS-----QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG-GHIN 428 (502)
Q Consensus 358 ~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~-----~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 428 (502)
.+|...+++..+ +.|+ ...|..+-..|.+ .|+.+.|.+.|+.....+-.-+..++...-..+++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 456666666554 4666 4567777788888 499999999999888876333477888889999985 9999
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHH
Q 010739 429 DAAETLTKMLDLGLY--PEYMDRV 450 (502)
Q Consensus 429 ~A~~l~~~m~~~g~~--p~~~t~~ 450 (502)
+|.+.+++.+....+ |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999999998877 7754433
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.00 E-value=8.8 Score=29.77 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHH
Q 010739 356 RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSA---VSRLLSRIEVMNSLC--KKKTLSWLLRGYIKGGHINDA 430 (502)
Q Consensus 356 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~---a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 430 (502)
....+.+-|.+....|. |+..+--.+-.++.++.+... +..+++.....+ .| .....-.|--|+.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555555444 555555555566666666554 777777765543 23 333344477788899999999
Q ss_pred HHHHHHHHHC
Q 010739 431 AETLTKMLDL 440 (502)
Q Consensus 431 ~~l~~~m~~~ 440 (502)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998888764
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.58 E-value=19 Score=28.92 Aligned_cols=114 Identities=11% Similarity=-0.047 Sum_probs=68.2
Q ss_pred hHhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHH---HHHHhcCChhHHHHHHHHHHHcC
Q 010739 340 YGVVHERLLAMYICAGRG------LEAERQLWEMKLVGKEADGD----LYDIVL---AICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 340 ~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~li---~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
|..+|-..+.-.-+.|+. ++..++|++... .++|+.. .|.-+. ..+...+++++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334666666666666777 677777776654 3445321 111111 12233378899999998886553
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
..- ...|-..-+-=.+.|++++|.+++.+-+..+.+|. ..+.+.+.-+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhh
Confidence 332 33433344444578999999999999888776543 3444444444
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.80 E-value=5.7 Score=37.89 Aligned_cols=65 Identities=14% Similarity=0.017 Sum_probs=42.2
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL-----VGKEADGDL 378 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 378 (502)
++..+.. |+.++|...+........- +...|-.+|.+|.+.|+..+|++.|++..+ .|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~--~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPY--REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444444 6666666655555443322 334788888888888888888888887653 388887655
No 242
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=78.27 E-value=14 Score=33.87 Aligned_cols=263 Identities=14% Similarity=0.057 Sum_probs=119.2
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSM---IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM 244 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~---y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~ 244 (502)
+.|+++-+..+++ .|..+|... -.+-+...++.|+.+- .+.+.+.|..|+...... . ......
T Consensus 34 ~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~i----v~~Ll~~ga~~~~~~~~~-----~-~~~~~~ 99 (337)
T 4g8k_A 34 QNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNG-----A-TPFILA 99 (337)
T ss_dssp HTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTC-----C-CHHHHH
T ss_pred HcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHH----HHHHHHcCCchhhhccCC-----C-chhHHH
Confidence 7899887777665 465554321 1123444567787654 444556777666543322 0 123333
Q ss_pred HHhCcHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh-------------ch
Q 010739 245 MVEGKYVDAIKLVIHLRESGLKPEV---YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD-------------GK 308 (502)
Q Consensus 245 ~~~g~~~~a~~~~~~m~~~g~~p~~---~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------------~~ 308 (502)
...+....... +...+..++. .-++.+..+ +.. +..+-+. .+.+.|..++.. -.
T Consensus 100 ~~~~~~~~~~~----~~~~~~~~~~~d~~g~t~l~~A-~~~-~~~~~~~----~ll~~ga~~~~~~~~~~~~~~~~~~g~ 169 (337)
T 4g8k_A 100 AIAGSVKLLKL----FLSKGADVNECDFYGFTAFMEA-AVY-GKVKALK----FLYKRGANVNLRRKTKEDQERLRKGGA 169 (337)
T ss_dssp HHHTCHHHHHH----HHTTTCCTTCBCTTCCBHHHHH-HHT-TCHHHHH----HHHHTTCCTTCCCCCC-----CTTCSC
T ss_pred HhcccchhhHH----hhhccchhhhhccCCCCHHHHH-HHc-CcHHHHH----HHHHcCCCcchhhccccccccccCCCC
Confidence 33444333322 2333333332 222333333 344 3444332 334444443321 11
Q ss_pred HHHHHHHHhcCcHHhHHHHHHHHHHcCC--CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHH
Q 010739 309 NLGLIEKYQSDLLADGSRLSSWAIQEGG--SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVLA 384 (502)
Q Consensus 309 ~~~li~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~ 384 (502)
+ .|..+...|..+-+..++++ .|. ...|....+.+..+... +.......+.+.+.+.|..++... -.+.+.
T Consensus 170 T-~L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~ 244 (337)
T 4g8k_A 170 T-ALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLI 244 (337)
T ss_dssp C-HHHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred c-HHHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 1 45555555777655554432 231 11121122333333332 222333344555567777665321 123344
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcccc
Q 010739 385 ICASQNEGSAVSRLLSRIEVMNSLC---KKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQ 461 (502)
Q Consensus 385 ~~~~~~~~~~a~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 461 (502)
..+..|..+.+..+++. .|..+ |..-.+.|. .-++.|+.+- .+.+++.|..||..+ .|..|+.
T Consensus 245 ~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~i----v~~Ll~~GAd~n~~~--~L~~A~~---- 310 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKI----AELLCKRGASTDCGD--LVMTARR---- 310 (337)
T ss_dssp HHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHHH----HHHHHTTSCSSTTCC--HHHHHHH----
T ss_pred HHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHHH----HHHHHHCCCCCCCCC--HHHHHHH----
Confidence 55566777765554431 22222 222222333 3356676653 344456687777654 4444443
Q ss_pred ccccHHHHHHHHh
Q 010739 462 QSGNVEAYLNLCK 474 (502)
Q Consensus 462 ~~~~~~~a~~~~~ 474 (502)
.|..+-..-+++
T Consensus 311 -~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 311 -NYDHSLVKVLLS 322 (337)
T ss_dssp -TTCHHHHHHHHH
T ss_pred -cCCHHHHHHHHH
Confidence 366554444443
No 243
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.58 E-value=12 Score=27.61 Aligned_cols=77 Identities=8% Similarity=0.043 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHHHcCCCChHHHHHHHH--HHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 010739 127 GRDSWCALEVFEWLKKENRVDNETMELMVS--IMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEM 204 (502)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~--~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 204 (502)
.+. ++|..+-+|+...+. .-.-.+|+ .+. +.|++++|..+.+.+- .||...|-+|-. .|.
T Consensus 21 H~H-qEA~tIAdwL~~~~~---~E~v~lIR~sSLm--------NrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rl 82 (116)
T 2p58_C 21 HYH-EEANCIAEWLHLKGE---EEAVQLIRLSSLM--------NRGDYASALQQGNKLA----YPDLEPWLALCE--YRL 82 (116)
T ss_dssp TCH-HHHHHHHHHHHHTTC---HHHHHHHHHHHHH--------HTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHH
T ss_pred hHH-HHHHHHHHHHHhCCc---HHHHHHHHHHHHH--------cchhHHHHHHhcCCCC----CchHHHHHHHHH--Hhc
Confidence 456 789999999988874 22233333 244 8999999999886543 799999987754 588
Q ss_pred CcHHHHHHHHHHHHHcC
Q 010739 205 EKKERAVLFVKAVLSRG 221 (502)
Q Consensus 205 g~~~~A~~l~~~m~~~~ 221 (502)
|--++++..+.++..+|
T Consensus 83 Gl~s~le~rL~~la~sg 99 (116)
T 2p58_C 83 GLGSALESRLNRLARSQ 99 (116)
T ss_dssp TCHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 99999999988887776
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.92 E-value=52 Score=30.33 Aligned_cols=165 Identities=15% Similarity=0.017 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHH----HHHHHHHcCCCCC
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIK----LVIHLRESGLKPE 268 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~----~~~~m~~~g~~p~ 268 (502)
+|.++..-|.+.+++++|.+++.+= ...++..|+..-|-+ +.+...+.++++|
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~ 93 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD 93 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence 5777888899999999999986432 444455565555444 4566677799999
Q ss_pred HhHHHHHHHHHHhcc-ccHHHHHHHHHHHH----HcCCC--CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCch
Q 010739 269 VYSYLIALTAVVKEL-NEFGKALRKLKGYV----RAGSI--AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLY 340 (502)
Q Consensus 269 ~~ty~~li~~~~~~~-~~~~~a~~~~~~m~----~~g~~--p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~ 340 (502)
..+..-++..+.... .+.+ -..++++++ +.|-. -|..... .+-..|.+ +++.+|+..| + .+.. ..
T Consensus 94 ~~~~~rL~~L~~~~~~~~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~-~ig~~~~~e~~~~~Ae~H~---i-lg~~-~s 166 (336)
T 3lpz_A 94 GASRGKLLGCLRLFQPGEPV-RKRFVKEMIDWSKKFGDYPAGDPELHH-VVGTLYVEEGEFEAAEKHL---V-LGTK-ES 166 (336)
T ss_dssp HHHHHHHHHHHTTSCTTCHH-HHHHHHHHHHHHHHHSSCTTCCHHHHH-HHHHHHHHTTCHHHHHHHH---T-TSCT-TH
T ss_pred HHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHhhcCCCCCCCHHHHH-HHHHHHHccCCHHHHHHHH---H-hcCC-ch
Confidence 988888888887773 2222 233444442 22322 2333333 45666888 9999998876 1 1221 12
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739 341 GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI 402 (502)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m 402 (502)
+..|..|+..+.+.+...++ |...-.++|..++ .+++..|..+++..
T Consensus 167 ~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL~yL~-l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 167 PEVLARMEYEWYKQDESHTA--------------PLYCARAVLPYLL-VANVRAANTAYRIF 213 (336)
T ss_dssp HHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccH--------------HHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 23565555555444332222 2223333443333 46777777766443
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.32 E-value=11 Score=27.65 Aligned_cols=77 Identities=9% Similarity=0.110 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHHHcCCCChHHHHHHHH--HHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 010739 127 GRDSWCALEVFEWLKKENRVDNETMELMVS--IMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEM 204 (502)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~--~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 204 (502)
.+. ++|..+-+|+...+. .-.-.+|+ .+. +.|++++|..+.+.+ ..||...|-+|-. .|.
T Consensus 20 H~H-qEA~tIAdwL~~~~~---~E~v~lIR~sSLm--------NrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rl 81 (115)
T 2uwj_G 20 HCH-EEALCIAEWLERLGQ---DEAARLIRISSLA--------NQGRYQEALAFAHGN----PWPALEPWFALCE--WHL 81 (115)
T ss_dssp TCH-HHHHHHHHHHHHTTC---HHHHHHHHHHHHH--------HTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHT
T ss_pred hHH-HHHHHHHHHHHhCCc---HHHHHHHHHHHHH--------cchhHHHHHHhcCCC----CCchHHHHHHHHH--Hhc
Confidence 455 789999999988874 22233333 244 899999999987644 4799999987754 589
Q ss_pred CcHHHHHHHHHHHHHcC
Q 010739 205 EKKERAVLFVKAVLSRG 221 (502)
Q Consensus 205 g~~~~A~~l~~~m~~~~ 221 (502)
|--++++..+.++..+|
T Consensus 82 Gl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 82 GLGAALDRRLAGLGGSS 98 (115)
T ss_dssp TCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 99999999998888777
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.32 E-value=18 Score=28.26 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739 359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419 (502)
Q Consensus 359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 419 (502)
+..+-++.+....+.|+.....+.+.+|-+..++..|.++++..+..- .+....|.++++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 444445555555667777777777777777777777777777665443 233445666554
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=74.16 E-value=32 Score=27.59 Aligned_cols=108 Identities=6% Similarity=-0.027 Sum_probs=74.4
Q ss_pred ChhhHHHHHHHHHHcCCCh-----HHHHHHHHHHHHcCCCChH----HHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHH
Q 010739 112 SARELQLVLVYFSQEGRDS-----WCALEVFEWLKKENRVDNE----TMELMVSIMCSWVKKYIEEERGVGDVVDLLVDM 182 (502)
Q Consensus 112 ~~~~~~~ll~~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~----~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m 182 (502)
++++|-..+..+-+.|+.. ++..++|+.....-.|+.. .|--+---++. +. ..+++++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~----~~-ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE----LK-AIQEPDDARDYFQMA 86 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH----HH-HHHCGGGCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH----HH-HhcCHHHHHHHHHHH
Confidence 4666777777777777771 3666788877665544322 33322222332 22 568999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC
Q 010739 183 DCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA 225 (502)
Q Consensus 183 ~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 225 (502)
.+..-.. ...|-..-..=.+.|+++.|.+++..-...+.+|.
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 7764333 77777777777899999999999999988876655
No 248
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=73.04 E-value=29 Score=31.75 Aligned_cols=269 Identities=14% Similarity=0.034 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHh---H
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVY---S 271 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t 271 (502)
++++...++.|+++-+..++ +.|..||...-.. | .+ .+..++..|+.+- .+.+.+.|..|+.. .
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~--g--~T-pLh~A~~~g~~~i----v~~Ll~~ga~~~~~~~~~ 92 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEG--G--WT-PLHNAVQMSREDI----VELLLRHGADPVLRKKNG 92 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTT--C--CC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTC
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCC--C--cC-HHHHHHHcCCHHH----HHHHHHcCCchhhhccCC
Confidence 34455557899987666655 5677776543110 0 01 3555667787654 44455666655432 2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch---hchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCC----c---hH
Q 010739 272 YLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL---DGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSS----L---YG 341 (502)
Q Consensus 272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~----~---~~ 341 (502)
...+..+ +.. +...... .+...+..++. .-.+ .+..+...|..+-+..++ +.|... . +.
T Consensus 93 ~~~~~~~-~~~-~~~~~~~----~~~~~~~~~~~~d~~g~t-~l~~A~~~~~~~~~~~ll----~~ga~~~~~~~~~~~~ 161 (337)
T 4g8k_A 93 ATPFILA-AIA-GSVKLLK----LFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLY----KRGANVNLRRKTKEDQ 161 (337)
T ss_dssp CCHHHHH-HHH-TCHHHHH----HHHTTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHH----HTTCCTTCCCCCC---
T ss_pred CchhHHH-Hhc-ccchhhH----HhhhccchhhhhccCCCC-HHHHHHHcCcHHHHHHHH----HcCCCcchhhcccccc
Confidence 2222222 222 2233222 22334443322 2222 455555557766555544 333110 0 00
Q ss_pred -----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 010739 342 -----VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG---DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKT 413 (502)
Q Consensus 342 -----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~ 413 (502)
.-+ +.+...++.|+.+-+..+++ +.|..++. .-.+.+..++.. +.......+.+.+.+.|..++...
T Consensus 162 ~~~~~~g~-T~L~~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d 236 (337)
T 4g8k_A 162 ERLRKGGA-TALMDAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRG 236 (337)
T ss_dssp --CTTCSC-CHHHHHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCC
T ss_pred ccccCCCC-cHHHHHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcC
Confidence 011 23344566787765554443 34555432 222333333322 222222334455566676554322
Q ss_pred H--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHH
Q 010739 414 L--SWLLRGYIKGGHINDAAETLTKMLDLGLYPEY---MDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVY 488 (502)
Q Consensus 414 ~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~ 488 (502)
. .+-+...+..|..+.+..+++. .|..++. .=.+.|.-|+. .|..+-+..+++.-.+.. ..+ .+.
T Consensus 237 ~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A~~-----~g~~~iv~~Ll~~GAd~n-~~~-~L~ 306 (337)
T 4g8k_A 237 ERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVE-----LKLKKIAELLCKRGASTD-CGD-LVM 306 (337)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHHHH-----TTCHHHHHHHHTTSCSST-TCC-HHH
T ss_pred CCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHHHH-----cCCHHHHHHHHHCCCCCC-CCC-HHH
Confidence 1 1244556678888766655432 3443332 22335666664 477776666665433333 333 344
Q ss_pred HHHhhcchhhhhcC
Q 010739 489 LYIKKYKLWIIKML 502 (502)
Q Consensus 489 ~y~~~g~~~~~~~l 502 (502)
.-++.|+.+.++.|
T Consensus 307 ~A~~~~~~~iv~~L 320 (337)
T 4g8k_A 307 TARRNYDHSLVKVL 320 (337)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHH
Confidence 45677788777654
No 249
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=72.57 E-value=35 Score=32.60 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=42.1
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFS--MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~--~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~ 245 (502)
..|+++-+..+++ .|..|+.. ...+.+...++.|+.+-+..++ +.|..++...... . ..+..++
T Consensus 23 ~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g-----~-t~L~~A~ 88 (437)
T 1n11_A 23 FMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDD-----Q-TPLHCAA 88 (437)
T ss_dssp HHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTS-----C-CHHHHHH
T ss_pred HCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCC-----C-CHHHHHH
Confidence 6788776666554 45544432 1223455556778776555444 4455544332211 0 1455556
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCC
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
..|+.+-+ +.+.+.|..|+
T Consensus 89 ~~g~~~~v----~~Ll~~ga~~~ 107 (437)
T 1n11_A 89 RIGHTNMV----KLLLENNANPN 107 (437)
T ss_dssp HHTCHHHH----HHHHHHTCCTT
T ss_pred HCCCHHHH----HHHHhCCCCCC
Confidence 66775533 33344455544
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=72.43 E-value=91 Score=32.45 Aligned_cols=52 Identities=13% Similarity=0.030 Sum_probs=37.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 385 ICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 385 ~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
-|...|+++.|.++-+.....- .-+-.+|..|...|...|+++.|+-.+.-+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4556788888887777665443 224778888888888888888888777765
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.18 E-value=11 Score=29.48 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=42.6
Q ss_pred cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739 171 GVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG 221 (502)
Q Consensus 171 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~ 221 (502)
+.-+..+-++.+-...+.|+..+..+.+++|-|.+|+..|.++|+..+.+-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 344555556666678899999999999999999999999999999998653
No 252
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.45 E-value=28 Score=29.44 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=40.2
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA 374 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (502)
+...++..+|..|...++-..-...|-.--..+...|++.+|.++|+.=.+.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33557777777777777666555677776777777788888888887777777776
No 253
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=69.56 E-value=8.9 Score=33.06 Aligned_cols=180 Identities=11% Similarity=-0.002 Sum_probs=86.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchh---chHHHHHHHHhcCcHHhHHHHHHHHHHcCCC--CchHhHHHHHHH
Q 010739 275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELD---GKNLGLIEKYQSDLLADGSRLSSWAIQEGGS--SLYGVVHERLLA 349 (502)
Q Consensus 275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~ 349 (502)
.|...++. |+.+....+++.+.+.|..++.. -.+ .|..+...|+.+-+..+ .+.|.. ..+. .-.+.+.
T Consensus 12 ~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~-~g~t~l~ 84 (241)
T 1k1a_A 12 PLHIAVVQ-GNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPSVVRLL----VTAGASPMALDR-HGQTAAH 84 (241)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCT-TSCCHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHHHHHHH----HHcCCCccccCC-CCCCHHH
Confidence 34455555 57777777776666677665543 222 45555555776544443 444522 1121 1123444
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHh
Q 010739 350 MYICAGRGLEAERQLWEMKLVGKEAD---GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKT---LSWLLRGYIK 423 (502)
Q Consensus 350 ~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~---~~~li~~~~~ 423 (502)
..++.|+.+-+..+++.....++.++ ....+ .+...+..|+.+.+ +.+.+.|..++... -.+.+...++
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHHHH
Confidence 55667776655555544332222332 22223 33344455665543 34444554443322 1224445556
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccccccccHHHHHHHHhh
Q 010739 424 GGHINDAAETLTKMLDLGLYPEYM---DRVAVLQGLRKRIQQSGNVEAYLNLCKR 475 (502)
Q Consensus 424 ~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~~~~~a~~~~~~ 475 (502)
.|+.+-+. .+.+.|..++.. -.+.|-.++. .|..+-...+++.
T Consensus 160 ~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~-----~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 160 NNSLSMVQ----LLLQHGANVNAQMYSGSSALHSASG-----RGLLPLVRTLVRS 205 (241)
T ss_dssp TTCHHHHH----HHHHTTCCTTCBCTTSCBHHHHHHH-----HTCHHHHHHHHHT
T ss_pred cCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHH-----cCCHHHHHHHHhc
Confidence 67765443 334456555432 2233444443 3666655555543
No 254
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=69.48 E-value=39 Score=32.22 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=34.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccccccccHHHHHHHHhhhhhcCC---chhHHHHHHH
Q 010739 418 LRGYIKGGHINDAAETLTKMLDLGLYPEYM---DRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL---IGPCLVYLYI 491 (502)
Q Consensus 418 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~---~~~~li~~y~ 491 (502)
+...+..|+.+-+ +.+.+.|..++.. -.+.|..|.. .|..+-...+++.-.+... -...-++.-.
T Consensus 315 L~~A~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~~A~~-----~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~ 385 (437)
T 1n11_A 315 LHVASHYGNIKLV----KFLLQHQADVNAKTKLGYSPLHQAAQ-----QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385 (437)
T ss_dssp HHHHHHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH-----TTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred HHHHHHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHHHHHH-----CChHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence 3334555665433 3334456554432 2344555544 3665555555443222111 1223455556
Q ss_pred hhcchhhhh
Q 010739 492 KKYKLWIIK 500 (502)
Q Consensus 492 ~~g~~~~~~ 500 (502)
+.|..+.++
T Consensus 386 ~~g~~~~~~ 394 (437)
T 1n11_A 386 RLGYISVTD 394 (437)
T ss_dssp HTTCHHHHH
T ss_pred HcCcHHHHH
Confidence 666655544
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.27 E-value=88 Score=30.16 Aligned_cols=258 Identities=14% Similarity=0.070 Sum_probs=141.5
Q ss_pred hccHhhHHHHHHHHhh-----CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-CCCCCCccccccCCCCchHHHH
Q 010739 169 ERGVGDVVDLLVDMDC-----VGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR-GIAYAEGDGEGQQGGPTGYLAW 242 (502)
Q Consensus 169 ~~~~~~a~~~~~~m~~-----~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~ty~~~~~~~~~~~~~ 242 (502)
.+++++|++-+-.+.+ .+..........++..|.+.|+++...+.+.-+..+ |..+...+. ++.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~----------~V~ 98 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY----------MIQ 98 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH----------HHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH----------HHH
Confidence 3677778777766553 235556778899999999999999998888766543 322211111 111
Q ss_pred HHHH----hC--cHHHHHHHHHHHHH--cC-CCC---CHhHHHHHHHHHHhccccHHHHHHHHHHH-HH-cCCCCch---
Q 010739 243 KMMV----EG--KYVDAIKLVIHLRE--SG-LKP---EVYSYLIALTAVVKELNEFGKALRKLKGY-VR-AGSIAEL--- 305 (502)
Q Consensus 243 ~~~~----~g--~~~~a~~~~~~m~~--~g-~~p---~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~-~g~~p~~--- 305 (502)
.++. .. +.+.-+.+.+.... .| +-. .......|...+-.. |++.+|.+++.++ ++ .|.....
T Consensus 99 ~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~-g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 99 KVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEE-GKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1111 11 11111111111110 01 111 112224466667777 8999999999998 33 3333321
Q ss_pred hchHHHHHHHHhc-CcHHhHHHHHHHHHH---cCCCCch--HhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHH
Q 010739 306 DGKNLGLIEKYQS-DLLADGSRLSSWAIQ---EGGSSLY--GVVHERLLAMYICAGRGLEAERQLWEMKLV-GKEADGDL 378 (502)
Q Consensus 306 ~~~~~~li~~~~~-g~~~~a~~~~~~m~~---~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t 378 (502)
..+- ..+..|.. +++..|..++.+... ...++++ ...|..++..+...+++.+|...|.+..+. ...-|...
T Consensus 178 e~~l-~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~ 256 (445)
T 4b4t_P 178 QFIL-EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAK 256 (445)
T ss_dssp HHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHH-HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHH
Confidence 2222 35566777 999999998887642 2222222 345677777888899999999888877543 22223332
Q ss_pred HHHHH----HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 010739 379 YDIVL----AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG--GHINDAAETLTKML 438 (502)
Q Consensus 379 ~~~li----~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~ 438 (502)
+..++ .+..-.+....-..++.........++...|..++.+|... .+++.+.+.|....
T Consensus 257 ~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 257 WKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 22222 11111222222222333333333345677888899988765 35666666665433
No 256
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=67.90 E-value=71 Score=28.93 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739 149 ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS--MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE 226 (502)
Q Consensus 149 ~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 226 (502)
...+.++. ++ +.|+.+....++.+ .|..++.. .-.+.+...++.|+.+-+.. +.+.|..++.
T Consensus 23 ~~~~~L~~-A~--------~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~ 86 (351)
T 3utm_A 23 YKKDELLE-AA--------RSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQL----LLQHGADVHA 86 (351)
T ss_dssp HHHHHHHH-HH--------HHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTTC
T ss_pred ccchhHHH-HH--------HcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHH----HHHcCCCCCc
Confidence 34455666 66 78998888887753 23322211 12344555677888765444 4456766655
Q ss_pred ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC
Q 010739 227 GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVY---SYLIALTAVVKELNEFGKALRKLKGYVRAGSIA 303 (502)
Q Consensus 227 ~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p 303 (502)
..... . ..+..++..|+.+ +++.+.+.|..++.. -++.+.. .+.. +..+-+ +.+.+.|..|
T Consensus 87 ~~~~g-----~-t~L~~A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~-A~~~-~~~~~v----~~Ll~~g~~~ 150 (351)
T 3utm_A 87 KDKGG-----L-VPLHNACSYGHYE----VTELLLKHGACVNAMDLWQFTPLHE-AASK-NRVEVC----SLLLSHGADP 150 (351)
T ss_dssp CCTTC-----C-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH-HHHT-TCHHHH----HHHHHTTCCT
T ss_pred cCCCC-----C-cHHHHHHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHH-HHHc-CCHHHH----HHHHHcCCCC
Confidence 43321 1 1455566677755 444455566665542 2233443 4445 455433 3445566665
Q ss_pred ch
Q 010739 304 EL 305 (502)
Q Consensus 304 ~~ 305 (502)
+.
T Consensus 151 ~~ 152 (351)
T 3utm_A 151 TL 152 (351)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 257
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=66.44 E-value=17 Score=30.14 Aligned_cols=16 Identities=0% Similarity=-0.078 Sum_probs=10.0
Q ss_pred HHHhcCcHHHHHHHHH
Q 010739 200 LYWEMEKKERAVLFVK 215 (502)
Q Consensus 200 ~~~~~g~~~~A~~l~~ 215 (502)
..++.|+.+.+..+++
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3456777776666653
No 258
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=66.37 E-value=43 Score=25.86 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=23.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcc--ccHHHHHHHHHHHHH
Q 010739 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKEL--NEFGKALRKLKGYVR 298 (502)
Q Consensus 248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~--~~~~~a~~~~~~m~~ 298 (502)
.....+.+-|.+....|. |+..+--.+-.++++.. .+..+++.++++..+
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~ 66 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP 66 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 344445555554444333 44444444444555541 233446666666543
No 259
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.01 E-value=44 Score=28.27 Aligned_cols=55 Identities=15% Similarity=-0.006 Sum_probs=27.0
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 200 LYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 200 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
..++.|+++.+..++ +.|..++...... ...+..++..|+.+-+ +.+.+.|..++
T Consensus 15 ~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g------~t~L~~A~~~~~~~~v----~~Ll~~~~~~~ 69 (240)
T 3eu9_A 15 KATQYGIYERCRELV----EAGYDVRQPDKEN------VTLLHWAAINNRIDLV----KYYISKGAIVD 69 (240)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTS------CCHHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred HHHHcCChHHHHHHH----HcCCCcCCCCCCC------CCHHHHHHHhCCHHHH----HHHHHcCCcch
Confidence 346677766554444 4565554332211 0145556666776443 34444554433
No 260
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=65.92 E-value=32 Score=29.28 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=12.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739 198 ISLYWEMEKKERAVLFVKAVLSRGIAYAE 226 (502)
Q Consensus 198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 226 (502)
+...++.|+.+-+ +.+.+.|..++.
T Consensus 15 L~~A~~~g~~~~v----~~Ll~~g~~~~~ 39 (237)
T 3b7b_A 15 LHAAAEAGHVDIC----HMLVQAGANIDT 39 (237)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCTTC
T ss_pred HHHHHHcCcHHHH----HHHHHcCCCcCc
Confidence 4444566665433 333445555443
No 261
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.99 E-value=43 Score=29.81 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=23.3
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE 226 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 226 (502)
..|+.+-+..+++ .|..++...-.+.+...++.|+.+-+.. +.+.|..++.
T Consensus 40 ~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~ 90 (285)
T 3kea_A 40 ADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQ 90 (285)
T ss_dssp HTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTC
T ss_pred HcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCC
Confidence 5566655555443 3433322212334444456666553333 3345655544
No 262
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=60.92 E-value=61 Score=29.87 Aligned_cols=218 Identities=15% Similarity=0.057 Sum_probs=109.5
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 010739 146 VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM--IEKVISLYWEMEKKERAVLFVKAVLSRGIA 223 (502)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--y~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 223 (502)
.|..-++.|.. ++ ..|+++.+..+++ .|..++... -.+.+...++.|+.+-+..+ .+.|..
T Consensus 16 ~d~~g~t~L~~-Aa--------~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~g~~ 78 (364)
T 3ljn_A 16 SDDENMEKIHV-AA--------RKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGEV 78 (364)
T ss_dssp CCHHHHHHHHH-HH--------HHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHH----HHHCCC
T ss_pred cCCCCCCHHHH-HH--------HcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHH----HHCCCC
Confidence 46666777666 66 7788877777664 455444321 12345555677877654444 455655
Q ss_pred CCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH--------------------hHHHHHHHHHHhcc
Q 010739 224 YAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV--------------------YSYLIALTAVVKEL 283 (502)
Q Consensus 224 p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--------------------~ty~~li~~~~~~~ 283 (502)
++...-.+ .+..++..|+.+-+..+++.-...|..|+. .-.+ .+...+..
T Consensus 79 ~~~~~g~t--------~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~- 148 (364)
T 3ljn_A 79 HSLWHGQK--------PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGL- 148 (364)
T ss_dssp CCCBTTBC--------HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHS-
T ss_pred ccccCCCC--------HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHc-
Confidence 54433333 566677788888887777776555665554 1123 33444444
Q ss_pred c--cHHHHHHHHHHHHHcCCCCchhc---hHHHHHHHHhcCcHHhHHHHHHHHHHcC---CCCchHhHHHHHHHHHHHcC
Q 010739 284 N--EFGKALRKLKGYVRAGSIAELDG---KNLGLIEKYQSDLLADGSRLSSWAIQEG---GSSLYGVVHERLLAMYICAG 355 (502)
Q Consensus 284 ~--~~~~a~~~~~~m~~~g~~p~~~~---~~~~li~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g 355 (502)
+ ..+- ++.+.+.|..++... .+ .|..+...|+.+-+..+++.-.... ....|..-+ +.+...+..|
T Consensus 149 g~~~~~~----v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~-t~L~~A~~~g 222 (364)
T 3ljn_A 149 GPEYLEM----IKILVQLGASPTAKDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILIN 222 (364)
T ss_dssp CGGGHHH----HHHHHHHTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC-CTTHHHHTTT
T ss_pred CCchHHH----HHHHHHcCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC-cHHHHHHHcC
Confidence 3 3333 334444566654332 22 4555555577665555543211100 001110111 2233344556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHH
Q 010739 356 RGLEAERQLWEMKLVGKEADGDL--YDIVLAICASQNEGSAVSRLLS 400 (502)
Q Consensus 356 ~~~~A~~l~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~l~~ 400 (502)
..+ +.+.+.+.|..++... -.+-+...+..|..+-+..+++
T Consensus 223 ~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 223 WED----VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265 (364)
T ss_dssp CHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHH
T ss_pred CHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHH
Confidence 644 3334445565554321 1123333444566666555554
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.78 E-value=1.2e+02 Score=29.16 Aligned_cols=189 Identities=14% Similarity=0.096 Sum_probs=119.8
Q ss_pred hCcHHHHHHHHHHHHHc-----CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHh---
Q 010739 247 EGKYVDAIKLVIHLRES-----GLKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQ--- 317 (502)
Q Consensus 247 ~g~~~~a~~~~~~m~~~-----g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~--- 317 (502)
.|++++|++.+-.+.+. ...-+......++..|.+. ++++...+.+.-+ .+.|..+...+ .+|..+.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~-~~~~~l~e~i~~Lskkr~qlk~ai~---~~V~~~~~~l 104 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASR-NKWDDLNEQLTLLSKKHGQLKLSIQ---YMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHTTTTTSHHHHH---HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHH
Confidence 47889999888777653 2344456677888999888 8999998888777 55666555544 3544422
Q ss_pred -c-CcHHhHHH--HHHHH--HHcCCCCc---hHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHH
Q 010739 318 -S-DLLADGSR--LSSWA--IQEGGSSL---YGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKEAD---GDLYDIVL 383 (502)
Q Consensus 318 -~-g~~~~a~~--~~~~m--~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~li 383 (502)
. ...+...+ +.+.. +..|..-. .......|...|...|++.+|.+++.++... |.... ...|..-+
T Consensus 105 ~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 105 KSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 2 22222111 11110 01111111 1223456777888899999999999998754 32222 23455566
Q ss_pred HHHHhcCChhHHHHHHHHHHH--cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739 384 AICASQNEGSAVSRLLSRIEV--MNSLCK----KKTLSWLLRGYIKGGHINDAAETLTKMLD 439 (502)
Q Consensus 384 ~~~~~~~~~~~a~~l~~~m~~--~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 439 (502)
..|...+++..|..++..... +...++ ...|..++..+...+++.+|...|.+..+
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 899999999999998877632 222222 23455678888888999998888777654
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.12 E-value=2e+02 Score=31.56 Aligned_cols=176 Identities=20% Similarity=0.030 Sum_probs=102.3
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCC----------------------chhchHHHHHHHHhc-CcHHhHHHHHHHHHH
Q 010739 277 TAVVKELNEFGKALRKLKGYVRAGSIA----------------------ELDGKNLGLIEKYQS-DLLADGSRLSSWAIQ 333 (502)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~m~~~g~~p----------------------~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~ 333 (502)
.++... |++++|.+.|.+-. .|+.. ....|-..++..+.+ +..+.+.++-....+
T Consensus 850 ~~~L~~-ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 850 LIYLKS-KEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHT-TCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHhc-CCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555 78999999886541 11111 011233367778888 888888887766665
Q ss_pred cCCCCch---HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH------------HHHH
Q 010739 334 EGGSSLY---GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSA------------VSRL 398 (502)
Q Consensus 334 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~------------a~~l 398 (502)
...+..+ ...|..+.+++...|++++|...+-.+.....+ ......++..+|..+.++. ..++
T Consensus 928 ~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~I 1005 (1139)
T 4fhn_B 928 SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNL 1005 (1139)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHH
T ss_pred hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHH
Confidence 5433322 125888999999999999999999888766544 4556677776776666654 3333
Q ss_pred HHHH-HHc-CCCCCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHCC----C------CCCHHHHHHHHHHH
Q 010739 399 LSRI-EVM-NSLCKKKTLSWLLRGYIKGGHINDAAE-TLTKMLDLG----L------YPEYMDRVAVLQGL 456 (502)
Q Consensus 399 ~~~m-~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g----~------~p~~~t~~~ll~~~ 456 (502)
+... +.. .......-|..|-.-+...|++.+|-. +|+...+-+ . ..-...|.++|+++
T Consensus 1006 L~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~yL~~INaL 1076 (1139)
T 4fhn_B 1006 LERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEHYLIVLNTL 1076 (1139)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 3221 111 111112335555555666777766544 455443321 1 11234666777766
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.03 E-value=33 Score=27.50 Aligned_cols=57 Identities=12% Similarity=-0.016 Sum_probs=42.3
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD 375 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 375 (502)
...+++..+|..|...++-..-...|..--..+...|++.+|.++|+.=.+.+-+|-
T Consensus 79 ~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 79 EYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 334557788888888886666666777777777778888888888888777777773
No 266
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=56.28 E-value=53 Score=27.08 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=37.3
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh
Q 010739 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEV-YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD 306 (502)
Q Consensus 241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 306 (502)
++.++..|+.+....++.. +..... ..-.+.|...+.. +..+.-.++++-+++.|..++..
T Consensus 10 l~~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~-~~~~~~~~iv~~Ll~~Gadvn~~ 71 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRN-NNDEARYKISMFLINKGADIKSR 71 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTC-SCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHc-CCcchHHHHHHHHHHCCCCCCCC
Confidence 6777888999887666543 321111 1112345555555 56666667777778888887654
No 267
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=55.94 E-value=91 Score=26.19 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHhc--cccHHHHHHHHHHHHHcCCCCchhch
Q 010739 275 ALTAVVKE--LNEFGKALRKLKGYVRAGSIAELDGK 308 (502)
Q Consensus 275 li~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~ 308 (502)
+|+++.|. |.+.+.|+.++-+|++.| +|....-
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaR 51 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICR 51 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHH
Confidence 45555554 356777777777777777 5544443
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.93 E-value=2.5e+02 Score=30.91 Aligned_cols=146 Identities=14% Similarity=0.039 Sum_probs=90.3
Q ss_pred HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----------------
Q 010739 312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA---------------- 374 (502)
Q Consensus 312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---------------- 374 (502)
++..+.+ +..+.+.++... .+. +....-.+-.+|...|++++|.++|.+.-. |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 4444444 555555554322 222 322222344456679999999999976421 1111
Q ss_pred -------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC-C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 010739 375 -------DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN-SLC-K--KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY 443 (502)
Q Consensus 375 -------~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~-~~p-~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 443 (502)
-..=|..++..+.+.+..+.+.++-....... ..+ + ...|..+.+++...|++++|...+-.+-+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 12336778888888888888887765443332 121 1 125777999999999999999999888776654
Q ss_pred CCHHHHHHHHHHHHccccccccHHHHH
Q 010739 444 PEYMDRVAVLQGLRKRIQQSGNVEAYL 470 (502)
Q Consensus 444 p~~~t~~~ll~~~~~~~~~~~~~~~a~ 470 (502)
...+..|+..+|. .|.++..+
T Consensus 971 --~~cLr~LV~~lce----~~~~~~L~ 991 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTK----QGKINQLL 991 (1139)
T ss_dssp --HHHHHHHHHHHHH----HCCHHHHH
T ss_pred --HHHHHHHHHHHHh----CCChhhhh
Confidence 4556777777775 34444443
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.90 E-value=1.3e+02 Score=28.84 Aligned_cols=58 Identities=12% Similarity=-0.010 Sum_probs=29.4
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCC-CchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGS-SLYGVVHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
.+-..|.+ |+++.|.+.+.++...... ..-...|-.+|..+...+++..+...+++..
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35555555 6666666666655544311 1122344445555555555555555555543
No 270
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.77 E-value=80 Score=26.52 Aligned_cols=182 Identities=11% Similarity=-0.017 Sum_probs=84.9
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh---chHHHHHHHH
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD---GKNLGLIEKY 316 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~~li~~~ 316 (502)
.+..++..|+.+....++..-...--.+|..-++.+..+ +.. ++.+-. +.+.+.|..++.. ..+ .|..+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~-g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~ 81 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSA-GHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAA 81 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHH-TCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHc-CcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHH
Confidence 677788889998888877653322122333333444444 444 455433 3445556655432 222 444444
Q ss_pred hcCcHHhHHHHHHHHHHcCCC--CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCh
Q 010739 317 QSDLLADGSRLSSWAIQEGGS--SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVLAICASQNEG 392 (502)
Q Consensus 317 ~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~~~~~~~~~ 392 (502)
..|+.+-+..+ .+.+.. ..+..- .+.+...++.|+.+-+ +.+.+.|..|+... -.+.+...+..|+.
T Consensus 82 ~~~~~~~v~~L----l~~g~~~~~~~~~g-~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 152 (231)
T 3aji_A 82 SAGXDEIVKAL----LVKGAHVNAVNQNG-CTPLHYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNL 152 (231)
T ss_dssp HHTCHHHHHHH----HHTTCCTTCCCTTS-CCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HcCHHHHHHHH----HHcCCCCCCCCCCC-CCHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 44766544443 344421 112111 2234445566665543 33445565554321 12233444455666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010739 393 SAVSRLLSRIEVMNSLCKKKTL--SWLLRGYIKGGHINDAAETLTKMLDLGLYPE 445 (502)
Q Consensus 393 ~~a~~l~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 445 (502)
+.+..++ ..|..++.... .+-+...++.|+.+- ++.+.+.|..|+
T Consensus 153 ~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~ 199 (231)
T 3aji_A 153 KMVHILL----FYKASTNIQDTEGNTPLHLACDEERVEE----AKFLVTQGASIY 199 (231)
T ss_dssp HHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCSC
T ss_pred HHHHHHH----hcCCCccccCCCCCCHHHHHHHCCCHHH----HHHHHHCCCCCC
Confidence 5544333 34443332211 113344455666543 333444565554
No 271
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=53.36 E-value=86 Score=27.72 Aligned_cols=222 Identities=11% Similarity=-0.012 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCC----CCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVLSRGI----AYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
...+.+...+..|+.+++.++.......-. ..+. .+.....-.+ .+..++..|+.+.+. .+.+.|..++
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~g~t-~L~~Aa~~g~~~~v~----~Ll~~g~~~~ 86 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP--LMGDAVSDWS-PMHEAAIHGHQLSLR----NLISQGWAVN 86 (285)
T ss_dssp ----------------------------CCSEECCCCT--TCSSSCCSCC-HHHHHHHTTCHHHHH----HHHHTTCCSC
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCc--ccCCCccCCC-HHHHHHHcCCHHHHH----HHHHCCCCCC
Confidence 345677788888988887776554432110 0000 0000001111 466667778865444 4445566665
Q ss_pred Hh---HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh---chHHHHHHHHhcCcHHhHHHHHHHHHHcCCC-CchH
Q 010739 269 VY---SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD---GKNLGLIEKYQSDLLADGSRLSSWAIQEGGS-SLYG 341 (502)
Q Consensus 269 ~~---ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~-~~~~ 341 (502)
.. -++.| ...+.. +..+-+ +.+.+.|..++.. -.+ .|..+...|..+-+..++ +.+.. ..+.
T Consensus 87 ~~~~~g~t~L-~~A~~~-g~~~~v----~~Ll~~ga~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~ 155 (285)
T 3d9h_A 87 IITADHVSPL-HEACLG-GHLSCV----KILLKHGAQVNGVTADWHT-PLFNACVSGSWDCVNLLL----QHGASVQPES 155 (285)
T ss_dssp EECTTCCCHH-HHHHHT-TCHHHH----HHHHHTTCCSSCCCTTCCC-HHHHHHHHTCHHHHHHHH----HTTCCSSCSC
T ss_pred CcCCCCCCHH-HHHHHC-CcHHHH----HHHHHCCCCCCCCCCCCCC-HHHHHHHcCHHHHHHHHH----HCCCCCCCCC
Confidence 42 22334 444455 455443 3445556665433 222 455555557766554443 44421 1110
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 010739 342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL-SWLL 418 (502)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~-~~li 418 (502)
.-.+.+...++.|+.+- ++.+.+.|..++... -.+.+...+..|+.+-+..++ +.|..++.... .+.+
T Consensus 156 -~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~g~t~L 226 (285)
T 3d9h_A 156 -DLASPIHEAARRGHVEC----VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL----ESGADVNQGKGQDSPL 226 (285)
T ss_dssp -TTSCHHHHHHHHTCHHH----HHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTBCHH
T ss_pred -CCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH----HCCCCCCCCCCCCCHH
Confidence 12234444556666553 344445565553221 113344444556665544443 34544432111 1234
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010739 419 RGYIKGGHINDAAETLTKMLDLGLYPE 445 (502)
Q Consensus 419 ~~~~~~g~~~~A~~l~~~m~~~g~~p~ 445 (502)
...++.|+.+-+.. +.+.|..++
T Consensus 227 ~~A~~~~~~~~v~~----Ll~~gad~~ 249 (285)
T 3d9h_A 227 HAVVRTASEELACL----LMDFGADTQ 249 (285)
T ss_dssp HHHHHTTCHHHHHH----HHHTTCCTT
T ss_pred HHHHHcCCHHHHHH----HHHCCCCCC
Confidence 44456666654333 334455443
No 272
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=51.64 E-value=2e+02 Score=30.77 Aligned_cols=162 Identities=12% Similarity=-0.022 Sum_probs=94.2
Q ss_pred HHHHHhc-C---cHHhHHHHHHHHHHcC---CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010739 312 LIEKYQS-D---LLADGSRLSSWAIQEG---GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLA 384 (502)
Q Consensus 312 li~~~~~-g---~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 384 (502)
++...++ | .++.|.+.|+.....+ ..++| .-+.+...-.+.|..++-..++++.+... +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~d--lr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN--LRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTT--THHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 4444444 4 4667888888766543 12334 33334444456787777777777777643 3444567888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccc
Q 010739 385 ICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG-HINDAAETLTKMLD---LGLYPEYMDRVAVLQGLRKRI 460 (502)
Q Consensus 385 ~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~~ 460 (502)
+++...+.+...++++................ +.+...+. ..+.|++.+.+=-+ ..+......+..++.+.....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~-~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~ 845 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATST-INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRF 845 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHH-HHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 88888888888888877654433334444444 34444332 23455555544211 223344456778888887655
Q ss_pred cccccHHHHHHHHhhhhhc
Q 010739 461 QQSGNVEAYLNLCKRLSDT 479 (502)
Q Consensus 461 ~~~~~~~~a~~~~~~m~~~ 479 (502)
....++++...+++.-.+.
T Consensus 846 ~t~~~~~~~~~f~~~~~~~ 864 (909)
T 4fke_A 846 SSEFELQQLEQFKKNNMDV 864 (909)
T ss_dssp CSHHHHHHHHHHHTTCSSS
T ss_pred CCHHHHHHHHHHHhhCCcc
Confidence 5556677777776544433
No 273
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=51.23 E-value=72 Score=26.74 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=21.2
Q ss_pred HHHHHHhc--cccHHHHHHHHHHHHHcCCCCchhch
Q 010739 275 ALTAVVKE--LNEFGKALRKLKGYVRAGSIAELDGK 308 (502)
Q Consensus 275 li~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~ 308 (502)
+|+++.|. |.|.+.|+.++-.|++.|-+|....-
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaR 45 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVAR 45 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 45555555 45677777777777777766655443
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.18 E-value=41 Score=27.33 Aligned_cols=54 Identities=11% Similarity=-0.074 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010739 322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD 375 (502)
Q Consensus 322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 375 (502)
+++..+|..|...++-..-...|..--..+-..|++.+|.++|..=.+.+-+|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 446667777777776555556666666666667777777777777777776664
No 275
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.44 E-value=80 Score=26.53 Aligned_cols=12 Identities=8% Similarity=-0.042 Sum_probs=5.3
Q ss_pred hhccHhhHHHHH
Q 010739 168 EERGVGDVVDLL 179 (502)
Q Consensus 168 ~~~~~~~a~~~~ 179 (502)
..|+.+-+..++
T Consensus 51 ~~~~~~~v~~Ll 62 (240)
T 3eu9_A 51 INNRIDLVKYYI 62 (240)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 445554443333
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.37 E-value=1.1e+02 Score=27.05 Aligned_cols=186 Identities=9% Similarity=-0.039 Sum_probs=91.6
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh---chHHHHHHHH
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD---GKNLGLIEKY 316 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~~li~~~ 316 (502)
.+..++..|+.+-+..++ +.|..++...-.+.+...+.. +..+-+ +.+.+.|..++.. -.+ .|..+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~-g~~~~v----~~Ll~~ga~~~~~d~~g~t-~L~~A~ 103 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATL-EDTKIV----KILLFSGLDDSQFDDKGNT-ALYYAV 103 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTS-SSCHHH----HHHHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHc-CCHHHH----HHHHHCCCCCCCcCCCCCc-HHHHHH
Confidence 455566678776554444 445555443223345555555 454433 3445567665432 222 455555
Q ss_pred hcCcHHhHHHHHHHHHHcCC--CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChh
Q 010739 317 QSDLLADGSRLSSWAIQEGG--SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGS 393 (502)
Q Consensus 317 ~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~ 393 (502)
..|+.+-+.-+++. |. ...+..-|.+.+...+..|..+-+. .+.+.|..+ +...-.+.+...+..|..+
T Consensus 104 ~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 104 DSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp HTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHH
Confidence 55777665555433 31 1112112235555666777765443 444445443 2212344455556678877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010739 394 AVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD 448 (502)
Q Consensus 394 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 448 (502)
-+..+++.-..... .+..-.+..+...++.|+. ++.+.+.+.|..|+...
T Consensus 176 ~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 176 MMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 76666654322221 1211222223334455664 34555566787776654
No 277
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.12 E-value=1e+02 Score=26.18 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 393 SAVSRLLSRIEVMNSLCKKKTLS-------WLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 393 ~~a~~l~~~m~~~~~~p~~~~~~-------~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
+.|.-+|+.+......++...=. ..+..|.+.|.+++|.++|++....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 35777888777665443333211 2455678899999999999998765
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.85 E-value=64 Score=27.90 Aligned_cols=91 Identities=8% Similarity=-0.040 Sum_probs=53.6
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHH-------HHHHHHHHH--hcCcHHHHHHHHHHHHHcCC-------CCCCc--cc
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSM-------IEKVISLYW--EMEKKERAVLFVKAVLSRGI-------AYAEG--DG 229 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~-------y~~li~~~~--~~g~~~~A~~l~~~m~~~~~-------~p~~~--ty 229 (502)
+.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+. ..+.. .-
T Consensus 14 ~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g 93 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRG 93 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEES
T ss_pred HhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCC
Confidence 78999998888888877776665433 344544432 67888877777766543221 11110 11
Q ss_pred cccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHh
Q 010739 230 EGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVY 270 (502)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 270 (502)
.+ .+..++..|+.+-+ +.+.+.|..++..
T Consensus 94 ~t--------~L~~A~~~g~~~~v----~~Ll~~ga~~~~~ 122 (260)
T 3jxi_A 94 QT--------ALHIAIERRCKHYV----ELLVEKGADVHAQ 122 (260)
T ss_dssp BC--------HHHHHHHTTCHHHH----HHHHHTTCCTTCC
T ss_pred CC--------HHHHHHHcCCHHHH----HHHHhCCCCcCcc
Confidence 22 45556667886544 4444567666654
No 279
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.69 E-value=99 Score=24.79 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC
Q 010739 172 VGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA 225 (502)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 225 (502)
-+.+..+++.+.+.|+--|..--...++...+.| .....+-.++.++||.++
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE 97 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH
Confidence 3445556666667887766666666777766654 245678888899997766
No 280
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=48.82 E-value=43 Score=29.76 Aligned_cols=109 Identities=9% Similarity=0.025 Sum_probs=60.5
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKEADGDLYDIVLAICASQNEGSAVS 396 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~ 396 (502)
|.+++|+.....-++....+.+ .-..++.-+|-.|++++|..-++...+. ...|...+|..+|.+=.
T Consensus 11 g~L~~al~~~~~~VR~~P~da~--~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~--------- 79 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDAS--LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ--------- 79 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH---------
T ss_pred CCHHHHHHHHHHHHHhCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH---------
Confidence 7777777777666665544434 6667888888888888888777766643 12223334444443211
Q ss_pred HHHHHHHHcCCCC-----CHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Q 010739 397 RLLSRIEVMNSLC-----KKKTLSWLLRGYI--KGGHINDAAETLTKMLD 439 (502)
Q Consensus 397 ~l~~~m~~~~~~p-----~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~ 439 (502)
.-.+.-.-+..| ...-...|+.+.. ..|+.++|.++-.+..+
T Consensus 80 -~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 80 -ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111111111111 1223333666554 34788888777776654
No 281
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=48.66 E-value=98 Score=26.21 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=23.7
Q ss_pred HHHHHHHhc--cccHHHHHHHHHHHHHcCCCCchhchH
Q 010739 274 IALTAVVKE--LNEFGKALRKLKGYVRAGSIAELDGKN 309 (502)
Q Consensus 274 ~li~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~ 309 (502)
-+|+++.|. |.+.+.|+.++-.|++.|-+|....-.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRR 74 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRR 74 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 356666665 457777777777777777766555443
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=48.43 E-value=1e+02 Score=25.93 Aligned_cols=58 Identities=9% Similarity=-0.145 Sum_probs=43.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010739 389 QNEGSAVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY 446 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 446 (502)
.++...+.++|..|...|+.-. ..-|...-..+...|++++|.++|+.=++.+-+|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3446678888888888877554 445555777788888888888888888888877743
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.39 E-value=1.1e+02 Score=26.49 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739 410 KKKTLSWLLRGYIKGGHINDAAETLTKM 437 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 437 (502)
+.......+..+.+-|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3344444555666666666666655543
No 284
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.02 E-value=77 Score=28.83 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
...+|.-|...|+.++|..-++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4678888999999999999988763
No 285
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.87 E-value=25 Score=30.65 Aligned_cols=63 Identities=6% Similarity=-0.042 Sum_probs=39.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH--HhCcHHHHHHHHHHH
Q 010739 197 VISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM--VEGKYVDAIKLVIHL 260 (502)
Q Consensus 197 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~--~~g~~~~a~~~~~~m 260 (502)
.+...++.|+.+....+++.+.+.|..++...+..+ ..-.+.+.++.. ..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREP-STGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCT-TTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhcc-CCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 345557889999999999999888877776554210 001122444432 457776666666554
No 286
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=47.62 E-value=24 Score=33.18 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=13.2
Q ss_pred HHHHHHhc-CcHHhHHHHHHHH
Q 010739 311 GLIEKYQS-DLLADGSRLSSWA 331 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m 331 (502)
.+|.-|-. |++++|.+.++++
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 45566666 7777777766553
No 287
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.11 E-value=1.9e+02 Score=27.30 Aligned_cols=229 Identities=13% Similarity=0.023 Sum_probs=132.0
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHc-CCCCC---HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhch-----HH
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRES-GLKPE---VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGK-----NL 310 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~-g~~p~---~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-----~~ 310 (502)
+..-+...|+.++..+++...+.- +.-|- ......+|+.+....+..+...++..+..+..-. +-.+| ++
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~l~~ 103 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344455678888888888766543 22222 2345677888877655566666666665322110 11111 23
Q ss_pred HHHHHHhc-CcHHhHHHHHHHHHHcCCCC----chHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q 010739 311 GLIEKYQS-DLLADGSRLSSWAIQEGGSS----LYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKEADGDLYDIVL 383 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li 383 (502)
-+...|.. |++.+|.+++.++...-... .-+.+|-.-+..|...+++.++...+..-... .+.|++..-..+=
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 57778888 99999999998877643221 12345667778888899999999998876543 3334444332222
Q ss_pred --H--HHH-hcCChhHHHHHH-HHHHHcCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 010739 384 --A--ICA-SQNEGSAVSRLL-SRIEVMNSLCK-----KKTLSWLLRGYIKGGHINDAAETLT-KMLDLGLYPEYMDRVA 451 (502)
Q Consensus 384 --~--~~~-~~~~~~~a~~l~-~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ 451 (502)
. .+. ..+++..|...| +....+...-+ ...|. ++.+..... ..+-..++. +....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl-vL~aLl~~~-r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM-LLCKIMLGQ-SDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTC-GGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHcCC-HHHHHHHhccccccccCCccHHHHHH
Confidence 1 334 678888887776 44444432211 11222 333333333 222222222 2111124577777888
Q ss_pred HHHHHHccccccccHHHHHHHHhhh
Q 010739 452 VLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 452 ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
++.++.. +++.+...+++..
T Consensus 262 L~~a~~~-----~dl~~f~~iL~~~ 281 (394)
T 3txn_A 262 VAEASHK-----RSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHT-----TCHHHHHHHHHHS
T ss_pred HHHHHHh-----CCHHHHHHHHHHH
Confidence 8888864 7887777776654
No 288
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=45.77 E-value=77 Score=23.99 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739 249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLADGSR 326 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~ 326 (502)
.+++|+.-+++.... .+|......++..+-.. ++-++++.... ...|+. +.++. -++....+ |-+++. +
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t---~Elawk~~k~~l~~~g~~--~~s~r-d~~r~a~~~glI~~~-~ 73 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT---FELAWKTLKTFLELQGLE--ARSPR-AAIRGAFQVGLLPED-P 73 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTCC--CSSHH-HHHHHHHHHTSSCCC-H
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCCC--CCCHH-HHHHHHHHcCCCCcH-H
Confidence 356667666666543 46777777788877777 78888888777 557774 44444 34444444 666555 4
Q ss_pred HHHHHHHcC
Q 010739 327 LSSWAIQEG 335 (502)
Q Consensus 327 ~~~~m~~~~ 335 (502)
.|..|....
T Consensus 74 ~w~~m~~~R 82 (119)
T 1wty_A 74 FWLEMLELR 82 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555433
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.62 E-value=63 Score=27.74 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=38.4
Q ss_pred HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739 321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA 374 (502)
Q Consensus 321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 374 (502)
.+++..+|..|...++-..-...|..--..+...|++.+|..+|+.=.+.+-+|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346667777777777666555667766667777788888888777777776666
No 290
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=44.33 E-value=30 Score=29.35 Aligned_cols=171 Identities=16% Similarity=0.028 Sum_probs=89.5
Q ss_pred HHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHH
Q 010739 311 GLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD---LYDIVLAICA 387 (502)
Q Consensus 311 ~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~li~~~~ 387 (502)
.|..+...|+++....+++.-... ....+. .-.+.+...++.|+.+-+ +.+.+.|..++.. .++ .+...+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~-~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~ 81 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSL-ATRTDQ-DSRTALHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAA 81 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGG-GGCCCT-TSCCHHHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhh-hhcCCC-CCCCHHHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHH
Confidence 345555559999888877542111 111111 122344555677775544 4445567655432 223 334444
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHcccc
Q 010739 388 SQNEGSAVSRLLSRIEVMNSLCKKK---TLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM---DRVAVLQGLRKRIQ 461 (502)
Q Consensus 388 ~~~~~~~a~~l~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~ 461 (502)
..|+.+-+ +.+...|..++.. -.+ .+...+..|+.+-+. .+.+.|..|+.. -.+.+..++.
T Consensus 82 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~---- 148 (231)
T 3aji_A 82 SAGXDEIV----KALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAV----MLLEGGANPDAKDHYDATAMHRAAA---- 148 (231)
T ss_dssp HHTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH----
T ss_pred HcCHHHHH----HHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHH----
Confidence 55776654 4444455544322 222 444556667766444 444567665433 2344555554
Q ss_pred ccccHHHHHHHHhhhhhcC---CchhHHHHHHHhhcchhhhhcC
Q 010739 462 QSGNVEAYLNLCKRLSDTS---LIGPCLVYLYIKKYKLWIIKML 502 (502)
Q Consensus 462 ~~~~~~~a~~~~~~m~~~~---~~~~~li~~y~~~g~~~~~~~l 502 (502)
.|..+....+++.-.+.. .-..+.++..++.|+.+.++.|
T Consensus 149 -~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 191 (231)
T 3aji_A 149 -KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191 (231)
T ss_dssp -HTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -cCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 477776666665432211 1234566777888988887754
No 291
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=44.14 E-value=1.3e+02 Score=24.57 Aligned_cols=130 Identities=10% Similarity=0.075 Sum_probs=75.3
Q ss_pred hhccHhhHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLK-PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV 246 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~-p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~ 246 (502)
+.|+++....+++. |.. .+...-.+.+...+..|+.+.-.++.+-+.+.|..++..+... .+.+.+.+..
T Consensus 15 ~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g-----~TpLh~a~~~ 85 (186)
T 3t8k_A 15 MLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEG-----TTLFFPLFQG 85 (186)
T ss_dssp HHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTC-----CCTHHHHHHH
T ss_pred HcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCC-----CcHHHHHHHc
Confidence 78888887776653 321 1111223556666788888777788888889998888755322 1113333322
Q ss_pred -hCcHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHhccccHHHHHHHHHHHHH-cCCCCchh
Q 010739 247 -EGKYVDAIKLVIHLRESGLKPEVYS---YLIALTAVVKELNEFGKALRKLKGYVR-AGSIAELD 306 (502)
Q Consensus 247 -~g~~~~a~~~~~~m~~~g~~p~~~t---y~~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~ 306 (502)
..+.....++.+.+.+.|..++... .++.+...+..+........+++-+.+ .|..++..
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~ 150 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc
Confidence 2345556677888888888776532 213344333331222344455666666 78777554
No 292
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=43.09 E-value=0.31 Score=47.42 Aligned_cols=235 Identities=15% Similarity=0.059 Sum_probs=138.4
Q ss_pred CCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHH
Q 010739 234 GGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGL 312 (502)
Q Consensus 234 ~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~l 312 (502)
..+++.+-.+.+..|++.+|++-|=+ .-|+..|..+|.+..+. |++++-+..+ .| .+..-+|.+.| .|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~-~~~edLv~yL-~MaRk~~ke~~IDt---eL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTS-GNWEELVKYL-QMARKKARESYVET---EL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTS-SCCTTHHHHH-HTTSTTCCSTTTTH---HH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhC-CCHHHHHHHH-HHHHHHhcccccHH---HH
Confidence 34445465555556666666654321 22566777888888888 6777777755 44 55544555554 68
Q ss_pred HHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--------------------C
Q 010739 313 IEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--------------------G 371 (502)
Q Consensus 313 i~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------------g 371 (502)
+-+|++ +++.+.++++ .+ ++..--..+-+-|...|.++.|.-+|..+..- .
T Consensus 123 i~ayAk~~rL~elEefl-----~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-----NG---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-----SC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHHHhhCcHHHHHHHH-----cC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888 8777766643 11 22122334455555666666666555543211 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHH
Q 010739 372 KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGL-YPEYMDRV 450 (502)
Q Consensus 372 ~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~ 450 (502)
-.-+..||--+-.+|...+.+..|...=-.+. ........++.-|-..|.+++-+.+++.-. |+ +...-+|+
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFT 267 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFT 267 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHH
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHH
Confidence 12366788888899999888876532211111 112222346677888899998888888744 33 36777777
Q ss_pred HHHHHHHccccccccHHHHHHHHhhh------------hhcCCchhHHHHHHHhhcchhhh
Q 010739 451 AVLQGLRKRIQQSGNVEAYLNLCKRL------------SDTSLIGPCLVYLYIKKYKLWII 499 (502)
Q Consensus 451 ~ll~~~~~~~~~~~~~~~a~~~~~~m------------~~~~~~~~~li~~y~~~g~~~~~ 499 (502)
-|--.|++ -+.+..++.++.. .+...+++-++..|.+-...+.+
T Consensus 268 ELaILYsK-----Y~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 268 ELAILYSK-----FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHHHHS-----SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHh-----cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 77777764 3334444433322 22233677788888877666644
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.64 E-value=1.1e+02 Score=23.45 Aligned_cols=53 Identities=6% Similarity=0.064 Sum_probs=25.5
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHcC
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME--KKERAVLFVKAVLSRG 221 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g--~~~~A~~l~~~m~~~~ 221 (502)
..|+.++|.+.++++....+. ...++.++..++=+.+ ..+.+.+++..+...|
T Consensus 19 ~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 19 LSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 456666666666665432221 2233444444444432 1345555555555444
No 294
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.44 E-value=95 Score=26.08 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=31.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739 417 LLRGYIKGGHINDAAETLTKMLDLGLYP---------EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL 476 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~~m~~~g~~p---------~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m 476 (502)
-+...+..|+.+-+..+++.+.+.|..+ |..-.+.+--|+. .|..+-+..+++.-
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~-----~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV-----EGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHH-----HTCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHH-----cCCHHHHHHHHhcC
Confidence 4555567778877777777777777533 3333344444443 35655555554433
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.40 E-value=70 Score=26.18 Aligned_cols=16 Identities=6% Similarity=-0.076 Sum_probs=7.8
Q ss_pred HHHHhcCcHHHHHHHH
Q 010739 199 SLYWEMEKKERAVLFV 214 (502)
Q Consensus 199 ~~~~~~g~~~~A~~l~ 214 (502)
...++.|+.+-+..++
T Consensus 77 ~~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 77 LYAGAQGRTEILAYML 92 (201)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344556655444443
No 296
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.22 E-value=1.3e+02 Score=24.20 Aligned_cols=52 Identities=8% Similarity=0.055 Sum_probs=42.4
Q ss_pred hhccHhhHHHHHHHHhhCCCCC--CHHHHHHHHH-H-----HHhcCcHHHHHHHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKP--GFSMIEKVIS-L-----YWEMEKKERAVLFVKAVLS 219 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p--~~~~y~~li~-~-----~~~~g~~~~A~~l~~~m~~ 219 (502)
+.|++-+|.++|++.-+..-.+ ....|..||. . ..+.|+...|..++.+-..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6799999999999998876666 5667888888 2 3468999999999988764
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.99 E-value=1.4e+02 Score=23.85 Aligned_cols=53 Identities=6% Similarity=0.074 Sum_probs=27.0
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHcC
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK--KERAVLFVKAVLSRG 221 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~--~~~A~~l~~~m~~~~ 221 (502)
..+++++|.+.++++....+. ...++.++..++=+.++ .+.+.+++..+...+
T Consensus 21 ~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 21 LSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 566666676666666432221 23344444445444322 345556666665555
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=40.36 E-value=21 Score=33.15 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=11.1
Q ss_pred HHHHHHhc-CcHHhHHHHHHH
Q 010739 311 GLIEKYQS-DLLADGSRLSSW 330 (502)
Q Consensus 311 ~li~~~~~-g~~~~a~~~~~~ 330 (502)
.++.-|.. |+.++|.+.+++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~e 36 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQE 36 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 34555555 666666665543
No 299
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=37.98 E-value=91 Score=24.15 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=11.0
Q ss_pred HHHHHHHhhcchhhhhcC
Q 010739 485 CLVYLYIKKYKLWIIKML 502 (502)
Q Consensus 485 ~li~~y~~~g~~~~~~~l 502 (502)
+.++.-++.|+.+.++.|
T Consensus 135 t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 135 TAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHh
Confidence 455556667777766543
No 300
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=37.33 E-value=1.7e+02 Score=23.81 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=11.1
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q 010739 417 LLRGYIKGGHINDAAETLT 435 (502)
Q Consensus 417 li~~~~~~g~~~~A~~l~~ 435 (502)
+-.+|.+.|+.++|+.+++
T Consensus 128 ia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHh
Confidence 4455556666666666555
No 301
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=37.04 E-value=1.2e+02 Score=22.18 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=46.6
Q ss_pred CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHh
Q 010739 98 REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMC 159 (502)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 159 (502)
..|.+++..|..-+++++...+.......|.. ..|..+++.+.+..++ .=|..++.++-
T Consensus 28 I~p~~IL~~L~~~L~~~d~E~I~a~~~~~G~~-~aa~~LL~~L~r~~~~--gWf~~fl~AL~ 86 (100)
T 2lwd_A 28 IIPTDIISDLSECLINQECEEILQICSTKGMM-AGAEKLVECLLRSDKE--NWPKTLKLALE 86 (100)
T ss_dssp CCTTTTHHHHTTTSCHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHCCCT--HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHCCHHHHHHHHHHHHccChH-HHHHHHHHHHHhcCcC--CcHHHHHHHHH
Confidence 56777777776677788899999999999999 7999999999875544 45777777665
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.09 E-value=1.1e+02 Score=24.78 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHHcC-CC--ChHHHHHHHH-HHhhhhhhhhhhhccHhhHHHHHHHHhh
Q 010739 127 GRDSWCALEVFEWLKKEN-RV--DNETMELMVS-IMCSWVKKYIEEERGVGDVVDLLVDMDC 184 (502)
Q Consensus 127 ~~~~~~a~~~~~~m~~~~-~~--~~~~~~~li~-~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 184 (502)
|++ .+|-++++..=+.. .+ +...|..||. .+.+...- +.|+...|..++++...
T Consensus 46 g~y-feaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~---~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEF-HESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHF---DFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCH-HHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHH
Confidence 677 79999999887665 45 5678999999 66554443 68999999999988755
No 303
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=35.64 E-value=2.9e+02 Score=26.06 Aligned_cols=165 Identities=13% Similarity=0.002 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchH--HHHHHHHhc--CcHHhHHHHHHHHHHcCCCCchHhHH-
Q 010739 271 SYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKN--LGLIEKYQS--DLLADGSRLSSWAIQEGGSSLYGVVH- 344 (502)
Q Consensus 271 ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~--~~li~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~- 344 (502)
....+...|.+. ++.++..+++... .-.+..|-..+.. ..||+.+.. +..+.-.++..+..+......- +|
T Consensus 21 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r--~fl 97 (394)
T 3txn_A 21 GILQQGELYKQE-GKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR--TFL 97 (394)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC--HHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 345577778888 7888888877665 2222233222211 036677776 6666666666555544322212 33
Q ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHH
Q 010739 345 -----ERLLAMYICAGRGLEAERQLWEMKLVGKEAD-----GDLYDIVLAICASQNEGSAVSRLLSRIEVMN--SLCKKK 412 (502)
Q Consensus 345 -----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~--~~p~~~ 412 (502)
.-+..-|...|++.+|..++.++.+.=-+.| ...|-.-+..|...+++..+...+....... +.++..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2578889999999999999999887522222 2234555578899999999998886553322 223443
Q ss_pred HHHH--HHH--HHH-hCCCHHHHHHHHHHHH
Q 010739 413 TLSW--LLR--GYI-KGGHINDAAETLTKML 438 (502)
Q Consensus 413 ~~~~--li~--~~~-~~g~~~~A~~l~~~m~ 438 (502)
+-.. ... .+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3322 222 234 6899999988877754
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.57 E-value=2.6e+02 Score=25.45 Aligned_cols=221 Identities=13% Similarity=-0.018 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739 189 PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 189 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
.|..-++.|. ..++.|+.+-+..++ +.|..++...... .+ .+..++..|+.+-+ +.+.+.|..++
T Consensus 16 ~d~~g~t~L~-~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g-----~t-~L~~A~~~g~~~~v----~~Ll~~g~~~~ 80 (364)
T 3ljn_A 16 SDDENMEKIH-VAARKGQTDEVRRLI----ETGVSPTIQNRFG-----CT-ALHLACKFGCVDTA----KYLASVGEVHS 80 (364)
T ss_dssp CCHHHHHHHH-HHHHHTCHHHHHHHH----HTTCCTTCCCTTC-----CC-HHHHHHHHCCHHHH----HHHHHHCCCCC
T ss_pred cCCCCCCHHH-HHHHcCCHHHHHHHH----HcCCCccccCCCC-----Cc-HHHHHHHcCCHHHH----HHHHHCCCCcc
Confidence 4555555554 446778877665555 5676666543321 11 45666667876544 44445565555
Q ss_pred HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch--------------------hchHHHHHHHHhcC--cHHhHHH
Q 010739 269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL--------------------DGKNLGLIEKYQSD--LLADGSR 326 (502)
Q Consensus 269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--------------------~~~~~~li~~~~~g--~~~~a~~ 326 (502)
...-.+.+...+.. +..+-+..+++.....|..++. .-.+ .|..+...| ..+-+..
T Consensus 81 ~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~~ 158 (364)
T 3ljn_A 81 LWHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIKI 158 (364)
T ss_dssp CBTTBCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHHH
T ss_pred ccCCCCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHHH
Confidence 52223344445555 5677666666654555665544 1222 465555556 5555544
Q ss_pred HHHHHHHcCC--CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHHhcCChhHHHHHHH
Q 010739 327 LSSWAIQEGG--SSLYGVVHERLLAMYICAGRGLEAERQLWEMKL-VGKEAD---GDLYDIVLAICASQNEGSAVSRLLS 400 (502)
Q Consensus 327 ~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~---~~t~~~li~~~~~~~~~~~a~~l~~ 400 (502)
+++ .|. ...|..-+ +.+...+..|+.+-+..+++.-.. .++.++ ..-. +.+...+..|..+-+..
T Consensus 159 Ll~----~ga~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~--- 229 (364)
T 3ljn_A 159 LVQ----LGASPTAKDKADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMR--- 229 (364)
T ss_dssp HHH----HTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC-CTTHHHHTTTCHHHHHH---
T ss_pred HHH----cCCCCcccCCCCC-CHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC-cHHHHHHHcCCHHHHHH---
Confidence 443 342 12221122 334445677776655555543211 011122 1112 23344456677665443
Q ss_pred HHHHcCCCCCHHHHH--HHHHHHHhCCCHHHHHHHHHH
Q 010739 401 RIEVMNSLCKKKTLS--WLLRGYIKGGHINDAAETLTK 436 (502)
Q Consensus 401 ~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~ 436 (502)
+.+.|..++..... +-+...++.|+.+-+..+++.
T Consensus 230 -Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 230 -FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp -HHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred -HHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 34456544432211 134445667888777777765
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.03 E-value=1.1e+02 Score=20.99 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=27.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010739 367 MKLVGKEADGDLYDIVLAICASQN-EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH 426 (502)
Q Consensus 367 m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 426 (502)
|.+.|++.+..- ..++..+...+ ..-.+.++.+.+...+...+..|....+..+...|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555554433 23334443332 333444555555554444445555555555554443
No 306
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=34.91 E-value=1.7e+02 Score=25.04 Aligned_cols=65 Identities=6% Similarity=-0.080 Sum_probs=38.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh---CcHHHHHHHHHHHHH
Q 010739 196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE---GKYVDAIKLVIHLRE 262 (502)
Q Consensus 196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~---g~~~~a~~~~~~m~~ 262 (502)
+.+...++.|+.+.+..+++.+.+.|..++...+.. ...-.+ .+..++.. |+.+-+..+++.-..
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~-d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB-TTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC-CCCCCC-HHHHHHHccccchHHHHHHHHhcCCc
Confidence 345556788999988889998888887766511110 000111 34444555 777666666655433
No 307
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.77 E-value=71 Score=27.92 Aligned_cols=191 Identities=14% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC------CccccccCCCCchHHHHHHHHh---CcHHHHHHHHHH------
Q 010739 195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYA------EGDGEGQQGGPTGYLAWKMMVE---GKYVDAIKLVIH------ 259 (502)
Q Consensus 195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~------~~ty~~~~~~~~~~~~~~~~~~---g~~~~a~~~~~~------ 259 (502)
.+.+...++.|+.+.+..+++...+.+...+ ...-.+ .+..++.. |+.+-+..+++.
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~t--------pL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKT--------CLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCC--------HHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCC--------HHHHHHHHHhcCChHHHHHHHHhhccccc
Q ss_pred ----HHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhc----------------hHHHHHHHHhcC
Q 010739 260 ----LRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDG----------------KNLGLIEKYQSD 319 (502)
Q Consensus 260 ----m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----------------~~~~li~~~~~g 319 (502)
....-...|..-.+.|..++... . .++++.+.+.|..++... ..+.|..+...|
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g-~-----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 159 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERR-N-----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTT-C-----HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcC-C-----HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC
Q ss_pred cHHhHHHHHH---HHHHcCCCCchHhHHHHHHHHHHHcCChHHH----HHHHHHHHHCCCCCC---------HHHHHHHH
Q 010739 320 LLADGSRLSS---WAIQEGGSSLYGVVHERLLAMYICAGRGLEA----ERQLWEMKLVGKEAD---------GDLYDIVL 383 (502)
Q Consensus 320 ~~~~a~~~~~---~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~l~~~m~~~g~~p~---------~~t~~~li 383 (502)
+.+-+.-+++ .-..-.....+ -++.|..+........+- .++++.+.+.|..++ ...-.+-+
T Consensus 160 ~~~~v~~Ll~~~~~gad~~~~d~~--g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL 237 (273)
T 2pnn_A 160 QLAIVKFLLQNSWQPADISARDSV--GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237 (273)
T ss_dssp CHHHHHHHHHCSSCCCCTTCCCTT--SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred CHHHHHHHHhcccCCCCceeeCCC--CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHH
Q ss_pred HHHHhcCChhHHHHHHHH
Q 010739 384 AICASQNEGSAVSRLLSR 401 (502)
Q Consensus 384 ~~~~~~~~~~~a~~l~~~ 401 (502)
...+..|+.+-+..+++.
T Consensus 238 ~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 238 ALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHC
No 308
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=34.66 E-value=1.6e+02 Score=22.88 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010739 373 EADGDLYDIVLAICASQNEG---SAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY 446 (502)
Q Consensus 373 ~p~~~t~~~li~~~~~~~~~---~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 446 (502)
.|+..|-=..-.++.++.+. ..+..++++....+..-.....-.|--|+.+.|++++|.+..+.+++. .|+-
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 34444433344455555544 357777777766552223555556888889999999999998888764 4543
No 309
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.38 E-value=3.1e+02 Score=26.05 Aligned_cols=131 Identities=10% Similarity=-0.090 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHHcC-CCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc--CCCCchhchHHHHHHHHhc-CcHHh
Q 010739 249 KYVDAIKLVIHLRESG-LKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA--GSIAELDGKNLGLIEKYQS-DLLAD 323 (502)
Q Consensus 249 ~~~~a~~~~~~m~~~g-~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~~li~~~~~-g~~~~ 323 (502)
..++-.+......+.. ... =..+...+-.-|.+. |+.++|.+.+.++... +...-...+ ..+|..+.. +++..
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~-Gd~~~A~~~~~~~~~~~~~~~~kid~~-l~~irl~l~~~d~~~ 186 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQI-GDKDNAEKTLGKSLSKAISTGAKIDVM-LTIARLGFFYNDQLY 186 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHH-CCCTTHHHHHHHHHHHHTCCCSHHHHH-HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHHHHhccHHH
Confidence 4444444445444432 222 224677788899999 8999999999999433 222222223 257777777 99999
Q ss_pred HHHHHHHHHHcCCCCchHhHHHHHHHH----HHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010739 324 GSRLSSWAIQEGGSSLYGVVHERLLAM----YICAGRGLEAERQLWEMKLVGKEADGDLYDI 381 (502)
Q Consensus 324 a~~~~~~m~~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 381 (502)
+.....+.........|....+.+-.. +...+++.+|...|-+....--..+..++..
T Consensus 187 ~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~ 248 (429)
T 4b4t_R 187 VKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYES 248 (429)
T ss_dssp HHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHH
Confidence 999988765433222221233322222 2226777777777766654433333334333
No 310
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=34.34 E-value=1.3e+02 Score=21.83 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-----HHCCCCCCHHHHHHH
Q 010739 395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM-----LDLGLYPEYMDRVAV 452 (502)
Q Consensus 395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m-----~~~g~~p~~~t~~~l 452 (502)
|.++.++...+|+.|+..+..-++..|...+- + |.++.++. -..|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45566666666666666666666665555543 1 33222222 134566666555444
No 311
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=34.20 E-value=91 Score=28.79 Aligned_cols=82 Identities=10% Similarity=0.065 Sum_probs=55.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HH--HHHHHHHHHHccccccccHHHHHHHHh
Q 010739 398 LLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE-YM--DRVAVLQGLRKRIQQSGNVEAYLNLCK 474 (502)
Q Consensus 398 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~--t~~~ll~~~~~~~~~~~~~~~a~~~~~ 474 (502)
+++.+...|+.|...++.|++..|++.=.++.+..+|+.+...|-... .. ...+++..+...+-...+.++.+.+++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 455667778888888888888888888888888888888888875433 22 223334333332222467788888887
Q ss_pred hhhhc
Q 010739 475 RLSDT 479 (502)
Q Consensus 475 ~m~~~ 479 (502)
.+...
T Consensus 311 ~~p~~ 315 (345)
T 2qfz_A 311 NLPTA 315 (345)
T ss_dssp SCSCT
T ss_pred cCCCc
Confidence 76554
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.93 E-value=1.3e+02 Score=23.92 Aligned_cols=70 Identities=6% Similarity=-0.029 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 010739 145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP-GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIA 223 (502)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 223 (502)
+-|+.-...=|. ++ ...+++..+|..|...|+-- -...|-.--..+-..|++.+|.++|+.=.+++-.
T Consensus 65 knD~RyLklWl~-ya----------~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 65 HNDPRFISYCLK-FA----------EYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp TTCHHHHHHHHH-HH----------TTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHH-HH----------HhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 346655554444 33 23455899999999998743 4567888888889999999999999988888766
Q ss_pred CC
Q 010739 224 YA 225 (502)
Q Consensus 224 p~ 225 (502)
|-
T Consensus 134 P~ 135 (152)
T 4a1g_A 134 PR 135 (152)
T ss_dssp SH
T ss_pred cH
Confidence 54
No 313
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.05 E-value=54 Score=25.54 Aligned_cols=17 Identities=6% Similarity=0.057 Sum_probs=9.6
Q ss_pred HHHHHHHhhcchhhhhc
Q 010739 485 CLVYLYIKKYKLWIIKM 501 (502)
Q Consensus 485 ~li~~y~~~g~~~~~~~ 501 (502)
+.++.-++.|+.+.++.
T Consensus 135 t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 135 TPLELALQRGAQDLVDI 151 (156)
T ss_dssp CHHHHHHHSCCHHHHHH
T ss_pred CHHHHHHHcCcHHHHHH
Confidence 34455556666666554
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.77 E-value=1.4e+02 Score=24.09 Aligned_cols=54 Identities=7% Similarity=-0.063 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010739 394 AVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM 447 (502)
Q Consensus 394 ~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 447 (502)
...++|..|...|+.-. ...|...-..+...|++.+|.++|+.-++.+-+|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 35667888877777554 4445556777778888888888888888888777554
No 315
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=31.45 E-value=1.1e+02 Score=27.27 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=51.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCCCHHHHHHHH
Q 010739 121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKPGFSMIEKVI 198 (502)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~y~~li 198 (502)
..+.+.|.. ..|++-...-.+...-|...=..++..+| -.|+++.|..-++...+.. ..|-...|..+|
T Consensus 5 ~~ll~~g~L-~~al~~~~~~VR~~P~da~~R~~LfqLLc--------v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 5 KNALSEGQL-QQALELLIEAIKASPKDASLRSSFIELLC--------IDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75 (273)
T ss_dssp HHHTTTTCH-HHHHHHHHHHHHTCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCCH-HHHHHHHHHHHHhCCcCHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 345567788 78888877777777558888888999999 8999999999888776642 233344555555
Q ss_pred HH
Q 010739 199 SL 200 (502)
Q Consensus 199 ~~ 200 (502)
++
T Consensus 76 ~a 77 (273)
T 1zbp_A 76 KA 77 (273)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 316
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=30.31 E-value=1.6e+02 Score=21.62 Aligned_cols=79 Identities=13% Similarity=-0.004 Sum_probs=33.0
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
...++|..+-+++...+. .. ++--+=+..+...|++++|..+.+.+ .-||...|-++- -.+.|..+++..-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E-~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DE-AARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HH-HHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HH-HHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHH
Confidence 355555555555544443 11 11112223344455555555444332 244544444432 2234444444433
Q ss_pred HHHHHHcC
Q 010739 399 LSRIEVMN 406 (502)
Q Consensus 399 ~~~m~~~~ 406 (502)
+..+...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 33443333
No 317
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=30.29 E-value=1.9e+02 Score=22.42 Aligned_cols=85 Identities=15% Similarity=0.034 Sum_probs=40.6
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMI--EKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y--~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~ 245 (502)
+.|+++.+..+++. .+..++.... .+.+...++.|+.+- ++.+.+.|..++...... .+ .+..++
T Consensus 17 ~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g-----~t-~L~~A~ 83 (165)
T 3twr_A 17 KAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSV----VEYLLQHGADVHAKDKGG-----LV-PLHNAC 83 (165)
T ss_dssp HHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTS-----CC-HHHHHH
T ss_pred HhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHH----HHHHHhcCCCCCccCCCC-----CC-HHHHHH
Confidence 67777777666543 2221211111 134444566677543 344445666665543321 01 344455
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCCH
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPEV 269 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~~ 269 (502)
..|+.+- .+.+.+.|..++.
T Consensus 84 ~~~~~~~----v~~Ll~~g~~~~~ 103 (165)
T 3twr_A 84 SYGHYEV----AELLVKHGAVVNV 103 (165)
T ss_dssp HTTCHHH----HHHHHHTTCCTTC
T ss_pred HcCcHHH----HHHHHhCCCCCCC
Confidence 5666553 3344445655543
No 318
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=30.05 E-value=1.7e+02 Score=21.62 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=33.2
Q ss_pred CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739 319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL 398 (502)
Q Consensus 319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l 398 (502)
...++|..+-+++...+. .. ++--+=+..+...|++++|..+.+.+. -||...|-++-. .+.|..+++..-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E-~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EE-AVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HH-HHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HH-HHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 355555555555544443 11 111122333444555555555444332 455554444422 233444444433
Q ss_pred HHHHHHc
Q 010739 399 LSRIEVM 405 (502)
Q Consensus 399 ~~~m~~~ 405 (502)
+..+...
T Consensus 92 L~~la~s 98 (116)
T 2p58_C 92 LNRLARS 98 (116)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 3333333
No 319
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=29.99 E-value=1e+02 Score=24.33 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=9.4
Q ss_pred HHHHHHHhhcchhhhhc
Q 010739 485 CLVYLYIKKYKLWIIKM 501 (502)
Q Consensus 485 ~li~~y~~~g~~~~~~~ 501 (502)
..++..++.|+.++++.
T Consensus 148 t~l~~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 148 TAFDISIDNGNEDLAEI 164 (169)
T ss_dssp CHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCHHHHHH
Confidence 34455556666666554
No 320
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=29.58 E-value=1.9e+02 Score=25.35 Aligned_cols=12 Identities=25% Similarity=-0.028 Sum_probs=6.5
Q ss_pred hhccHhhHHHHH
Q 010739 168 EERGVGDVVDLL 179 (502)
Q Consensus 168 ~~~~~~~a~~~~ 179 (502)
..|+.+-+..++
T Consensus 101 ~~g~~~~v~~Ll 112 (285)
T 3d9h_A 101 LGGHLSCVKILL 112 (285)
T ss_dssp HTTCHHHHHHHH
T ss_pred HCCcHHHHHHHH
Confidence 566665544444
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.17 E-value=61 Score=29.95 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=32.6
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHcC
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEM-EKKERAVLFVKAVLSRG 221 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~-g~~~~A~~l~~~m~~~~ 221 (502)
..|++++|...++++....+.+ ..++..+..++=+. ..-+.+.+++..+.+.|
T Consensus 23 ~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~ 76 (339)
T 1ug3_A 23 HLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAG 76 (339)
T ss_dssp HHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCC
Confidence 6789999999988886443322 23444444444332 23456777788887666
No 322
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.09 E-value=1.4e+02 Score=29.43 Aligned_cols=138 Identities=12% Similarity=0.012 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcC--CCCCCccccccCCCCchHHHHHHHHhCcHHH----------HH-HHHHHH
Q 010739 194 IEKVISLYWEMEKKERAVLFVKAVLSRG--IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVD----------AI-KLVIHL 260 (502)
Q Consensus 194 y~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~----------a~-~~~~~m 260 (502)
+-.++-.+...+++++|.++-+.+.... ..-|..|...-...++-+..+.+-..|+... .. .++...
T Consensus 139 ~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~ 218 (523)
T 4b4t_S 139 HLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL 218 (523)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH
Confidence 3334444566788888887766554211 1223333333111111112222222233322 11 233344
Q ss_pred HHcCCCCC----HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch------hchHHHHHHHHhc-CcHHhHHHHHH
Q 010739 261 RESGLKPE----VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL------DGKNLGLIEKYQS-DLLADGSRLSS 329 (502)
Q Consensus 261 ~~~g~~p~----~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~~li~~~~~-g~~~~a~~~~~ 329 (502)
+..-+.-| ...+|.+++.|... +.++.|..++.... +.... ..|.-.+-..+.- +++.+|.+.|.
T Consensus 219 rta~lr~D~~~qa~l~nllLRnYL~~-~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 219 KIASLKHDNETKAMLINLILRDFLNN-GEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHCCSCSSSCHHHHHHHHHHHHHHHS-SCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcccCcchhHHHHHHHHHHHHcc-CcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44444444 35678888888888 88999988877652 21111 2222112222344 88889998887
Q ss_pred HHHHcC
Q 010739 330 WAIQEG 335 (502)
Q Consensus 330 ~m~~~~ 335 (502)
......
T Consensus 295 ~A~rka 300 (523)
T 4b4t_S 295 AAIRKA 300 (523)
T ss_dssp HHTSSC
T ss_pred HHHHhC
Confidence 765543
No 323
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=28.68 E-value=81 Score=26.31 Aligned_cols=169 Identities=11% Similarity=0.026 Sum_probs=87.2
Q ss_pred HHHHHHhcCcHHhHHHHHHHHHHcCCC--CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC---CHHHHHHHHH
Q 010739 311 GLIEKYQSDLLADGSRLSSWAIQEGGS--SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK-EA---DGDLYDIVLA 384 (502)
Q Consensus 311 ~li~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p---~~~t~~~li~ 384 (502)
.|..+...|+.+-+..++ +.+.. ..+. .-.+.+...++.|+.+-+..++ +.+. .+ +....+. +.
T Consensus 28 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~g~t~-L~ 97 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLL----EASADANIQDN-MGRTPLHAAVSADAQGVFQILI----RNRATDLDARMHDGTTP-LI 97 (223)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHH----HBTTSCTTCCCTTCCCH-HH
T ss_pred hHHHHHHcCCHHHHHHHH----HcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCcH-HH
Confidence 455555558877665554 44522 2221 2234455567778766554444 3432 22 2222333 33
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHcc
Q 010739 385 ICASQNEGSAVSRLLSRIEVMNSLCKKKTL--SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM---DRVAVLQGLRKR 459 (502)
Q Consensus 385 ~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~ 459 (502)
..+..|+.+-+..+ .+.|..++.... .+.+...+..|+.+-+ +.+.+.|..++.. -.+.+..|+.
T Consensus 98 ~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~-- 167 (223)
T 2f8y_A 98 LAARLAVEGMLEDL----INSHADVNAVDDLGKSALHWAAAVNNVDAA----VVLLKNGANKDMQNNREETPLFLAAR-- 167 (223)
T ss_dssp HHHHHTCHHHHHHH----HHTTCCTTCBCTTSCBHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHH--
T ss_pred HHHHhCcHHHHHHH----HHcCCCCcCcCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCcCHHHHHHH--
Confidence 34455666654444 445544433221 1244445667776544 4444557665433 2345555554
Q ss_pred ccccccHHHHHHHHhhhhhcCC---chhHHHHHHHhhcchhhhhcC
Q 010739 460 IQQSGNVEAYLNLCKRLSDTSL---IGPCLVYLYIKKYKLWIIKML 502 (502)
Q Consensus 460 ~~~~~~~~~a~~~~~~m~~~~~---~~~~li~~y~~~g~~~~~~~l 502 (502)
.|..+-...+++.-.+... .....++.-.+.|..+.++.|
T Consensus 168 ---~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 210 (223)
T 2f8y_A 168 ---EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210 (223)
T ss_dssp ---HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred ---cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHH
Confidence 4777777666655433221 234566777888888887754
No 324
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.25 E-value=5.7e+02 Score=27.20 Aligned_cols=160 Identities=9% Similarity=-0.087 Sum_probs=87.4
Q ss_pred HHHHHHHHhcc--ccHHHHHHHHHHHHHc----CCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739 273 LIALTAVVKEL--NEFGKALRKLKGYVRA----GSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHER 346 (502)
Q Consensus 273 ~~li~~~~~~~--~~~~~a~~~~~~m~~~----g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 346 (502)
..++...|+.| .-.+.|.+.|++.... .+.||.... .+..+...|.-++-..+++....... ..--..
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~--vy~~~~~~g~~~~~~~l~~~~~~~~~----~~ek~~ 763 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST--IYCNAIAQGGQDQWDFAWGQLQQAQL----VNEADK 763 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHH--HHHHHHHHSCHHHHHHHHHHHHHCCS----HHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHccCC----HHHHHH
Confidence 45677788874 2346777778777543 256666542 22222333666655556655554432 235577
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHH-HHH--cCCCCCHHHHHHHHHHH
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLVG-KEADGDLYDIVLAICASQNE-GSAVSRLLSR-IEV--MNSLCKKKTLSWLLRGY 421 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~~~-~~~a~~l~~~-m~~--~~~~p~~~~~~~li~~~ 421 (502)
++.+++...+.+...++++...... +++.. ...++.+.+.... .+.|.+.+.. ... .........+..+|.+.
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd--~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQD--ATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGGG--HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchhh--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 8999999999888888888766533 44422 2234444443322 2333333321 111 11122344677788887
Q ss_pred HhCCCHHHHHHHHHHHHHC
Q 010739 422 IKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 422 ~~~g~~~~A~~l~~~m~~~ 440 (502)
+..-.-++-.+-++...+.
T Consensus 842 ~~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp HTTCCSHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHhh
Confidence 7765555555555555443
No 325
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.04 E-value=3.2e+02 Score=24.28 Aligned_cols=83 Identities=14% Similarity=-0.066 Sum_probs=37.7
Q ss_pred hhccHhhHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739 168 EERGVGDVVDLLVDMDCVGLKPGFS--MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM 245 (502)
Q Consensus 168 ~~~~~~~a~~~~~~m~~~g~~p~~~--~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~ 245 (502)
..|+.+-+..++ +.|..++.. .-.+.+...++.|+.+-+ +.+.+.|..++...... .+ .+..++
T Consensus 67 ~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~iv----~~Ll~~g~~~~~~~~~g-----~t-~L~~A~ 132 (351)
T 3utm_A 67 GYNRVRIVQLLL----QHGADVHAKDKGGLVPLHNACSYGHYEVT----ELLLKHGACVNAMDLWQ-----FT-PLHEAA 132 (351)
T ss_dssp HTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTC-----CC-HHHHHH
T ss_pred HcCCHHHHHHHH----HcCCCCCccCCCCCcHHHHHHHCCCHHHH----HHHHHCCCCCCCCCCCC-----CC-HHHHHH
Confidence 566665555444 345433321 111234444566765533 33445565555432211 01 344455
Q ss_pred HhCcHHHHHHHHHHHHHcCCCCC
Q 010739 246 VEGKYVDAIKLVIHLRESGLKPE 268 (502)
Q Consensus 246 ~~g~~~~a~~~~~~m~~~g~~p~ 268 (502)
..|+.+-+ +.+.+.|..|+
T Consensus 133 ~~~~~~~v----~~Ll~~g~~~~ 151 (351)
T 3utm_A 133 SKNRVEVC----SLLLSHGADPT 151 (351)
T ss_dssp HTTCHHHH----HHHHHTTCCTT
T ss_pred HcCCHHHH----HHHHHcCCCCc
Confidence 56665433 33344555554
No 326
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.94 E-value=82 Score=28.88 Aligned_cols=110 Identities=13% Similarity=0.022 Sum_probs=60.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHH----HHhCCCHHHHHHHHH
Q 010739 362 RQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW--LLRG----YIKGGHINDAAETLT 435 (502)
Q Consensus 362 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~--li~~----~~~~g~~~~A~~l~~ 435 (502)
+++..+.+.|+.|...++.-++..+++.=.++.+.++|+..-..|.. ...+-+ ++.. ..+..++++.+++++
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~--~l~~valaiL~~~~~~ll~~~~~~~il~~l~ 286 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE--VIFKVALSLLGSHKPLILQHENLETIVDFIK 286 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 56666777788888777888887777777778888888877776643 222222 2221 222346666666666
Q ss_pred HHHHCCCCCCHHHHHHHH-HHHHccccccccHHHHHHHHhhhhh
Q 010739 436 KMLDLGLYPEYMDRVAVL-QGLRKRIQQSGNVEAYLNLCKRLSD 478 (502)
Q Consensus 436 ~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~~~~~a~~~~~~m~~ 478 (502)
..... .+......++ .|+.- ....++....+-+..+.+
T Consensus 287 ~~~p~---~~~~di~~li~~A~~l--~~s~~l~~~e~ey~~l~~ 325 (331)
T 3qye_A 287 STLPN---LGLVQMEKTINQVFEM--DIAKQLQAYEVEYHVLQE 325 (331)
T ss_dssp HTTTC---CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHC
T ss_pred hhCCC---CCHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHH
Confidence 52211 2333444444 33321 123445555555544444
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.83 E-value=2.2e+02 Score=22.36 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=31.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739 366 EMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI 427 (502)
Q Consensus 366 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 427 (502)
.|++.|++++..= ..++..+...+..-.|.++++.++..+...+..|..-.+..+...|-+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455566554432 233344444444555666666666655555555555555555555543
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.37 E-value=2.2e+02 Score=22.17 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 362 RQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 362 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
.+.+.|++.|++++..= ..++..+...+..-.|.++++.++..+...+..|...-++.+...|
T Consensus 8 ~~~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 8 EALETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.35 E-value=2.7e+02 Score=23.25 Aligned_cols=60 Identities=5% Similarity=-0.106 Sum_probs=37.3
Q ss_pred HHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-----HHHHHHHHHHHcC
Q 010739 347 LLAMYIC---AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS-----AVSRLLSRIEVMN 406 (502)
Q Consensus 347 li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~-----~a~~l~~~m~~~~ 406 (502)
+|+++-| ..+.+.|+-.+-+|.+.|..|....=..++-+.-..|.-+ .|...++.....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 4555554 5778888888888888887776666666666655555433 3444445555555
No 330
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=26.69 E-value=3e+02 Score=23.50 Aligned_cols=8 Identities=0% Similarity=-0.193 Sum_probs=3.5
Q ss_pred HHHHcCCh
Q 010739 350 MYICAGRG 357 (502)
Q Consensus 350 ~~~~~g~~ 357 (502)
..++.|..
T Consensus 172 ~A~~~~~~ 179 (261)
T 2xai_A 172 AVARTASE 179 (261)
T ss_dssp HHHHHTCH
T ss_pred HHHHcCCH
Confidence 33444544
No 331
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.29 E-value=2.9e+02 Score=23.17 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=38.9
Q ss_pred HHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-----HHHHHHHHHHHcCC
Q 010739 347 LLAMYIC---AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS-----AVSRLLSRIEVMNS 407 (502)
Q Consensus 347 li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~-----~a~~l~~~m~~~~~ 407 (502)
+|+++-| ..+.+.|+-.+-+|.+.| .|....=..++-+.-..|.-+ .|...++.....|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4555554 678888888888888888 666665566666666655443 34445566666664
No 332
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.27 E-value=4e+02 Score=25.46 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHh
Q 010739 356 RGLEAERQLWEMKL--------VGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS----LCKKKTLSWLLRGYIK 423 (502)
Q Consensus 356 ~~~~A~~l~~~m~~--------~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~----~p~~~~~~~li~~~~~ 423 (502)
..++...+++.... .++..+......++.. ..|+...+..+++.+..... .....+...+-....+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred C------------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739 424 G------------------------GHINDAAETLTKMLDLGLYPEYMDRVAVLQGL 456 (502)
Q Consensus 424 ~------------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 456 (502)
. ++.+.|+..+.+|.+.|..|....-..+..+.
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
No 333
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=26.23 E-value=2.4e+02 Score=22.21 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739 373 EADGDLYDIVLAICASQNEGS---AVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL 440 (502)
Q Consensus 373 ~p~~~t~~~li~~~~~~~~~~---~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 440 (502)
.|+..|--..-.++.++.+.+ ++..+++.+...+..-.....-.|--|+.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555444555666665544 57777777766443223444555788999999999999999988875
No 334
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.08 E-value=72 Score=27.47 Aligned_cols=55 Identities=13% Similarity=-0.017 Sum_probs=29.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhc---CChhHHHHHHHHH
Q 010739 347 LLAMYICAGRGLEAERQLWEMKLVGKEADG-------DLYDIVLAICASQ---NEGSAVSRLLSRI 402 (502)
Q Consensus 347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~---~~~~~a~~l~~~m 402 (502)
.+...++.|+.+....+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcC
Confidence 344556677777776777776666665543 223333333 333 5565555555443
No 335
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.50 E-value=2.1e+02 Score=21.95 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 392 GSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 392 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
.-.|.++++.++..+...+..|...-++.+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444555555554444444444444444444444
No 336
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.40 E-value=2.3e+02 Score=21.68 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMK 368 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~ 368 (502)
..+.++.-|...|+.++|.+.++++.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34556666666666666666666664
No 337
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.19 E-value=2.2e+02 Score=22.62 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCC
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNE--GSAVSRLLSRIEVMNS 407 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~l~~~m~~~~~ 407 (502)
..+.+|.-|...|+.++|...++++..-.+. ......++..++-+.++ .+.+..++..+...++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567777788888888888888877521111 12233333344444322 2345555555554443
No 338
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=25.06 E-value=51 Score=29.08 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=10.4
Q ss_pred CHhHHHHHHHHHHhccccHHHHH
Q 010739 268 EVYSYLIALTAVVKELNEFGKAL 290 (502)
Q Consensus 268 ~~~ty~~li~~~~~~~~~~~~a~ 290 (502)
|..-...|+.|+.. |+.+.+.
T Consensus 8 d~~~~~~L~~A~~~--G~~~~v~ 28 (269)
T 4b93_B 8 DYREVEKLLRAVAD--GDLEMVR 28 (269)
T ss_dssp CCHHHHHHHHHHHT--TCHHHHH
T ss_pred CccchhHHHHHHHc--CCHHHHH
Confidence 33444566665543 3555443
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.38 E-value=91 Score=31.86 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739 233 QGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE 282 (502)
Q Consensus 233 ~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 282 (502)
+|.+...+++-++++|++++|.++.++.... +.--...|...+..|+..
T Consensus 151 ~g~p~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 151 NGVPIWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp TTEEHHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred CCcccHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 4566777999999999999999998766533 111124566667777643
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.26 E-value=1.8e+02 Score=22.79 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=24.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 367 MKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 367 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
+++.|++++..- ..++..+...+ .-.|.++++.++..+...+..|..--+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455554432 12223333333 3345555555555444444444444444444444
No 341
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.12 E-value=77 Score=26.77 Aligned_cols=169 Identities=12% Similarity=-0.006 Sum_probs=85.8
Q ss_pred HHHHHHhcCcHHhHHHHHHHHHHcCCC--CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 010739 311 GLIEKYQSDLLADGSRLSSWAIQEGGS--SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVLAIC 386 (502)
Q Consensus 311 ~li~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~~~ 386 (502)
.|..+...|+.+.+..+ .+.|.. ..+..-+ +.+...++.|+.+-+ +.+.+.|..++... -.+.+...
T Consensus 14 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHML----VQAGANIDTCSEDQR-TPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCC-CHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHH----HHcCCCcCccCCCCC-CHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHH
Confidence 45555555887655444 445522 2221123 345555667776544 44455666554321 12344445
Q ss_pred HhcCChhHHHHHHHHHHHcC-CCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHcc
Q 010739 387 ASQNEGSAVSRLLSRIEVMN-SLC---KKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM---DRVAVLQGLRKR 459 (502)
Q Consensus 387 ~~~~~~~~a~~l~~~m~~~~-~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~ 459 (502)
+..|+.+-+..+ ...+ ..+ +..-.+ .+...++.|+.+ +++.+.+.|..++.. -...+..++.
T Consensus 85 ~~~~~~~~~~~L----l~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-- 153 (237)
T 3b7b_A 85 AKKGHYEVVQYL----LSNGQMDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAF-- 153 (237)
T ss_dssp HHTTCHHHHHHH----HTTTCCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH--
T ss_pred HHcCCHHHHHHH----HhCCCCCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHH--
Confidence 556776654444 3444 222 222222 344455667765 444455567655432 2234444443
Q ss_pred ccccccHHHHHHHHhhhhhcCC---chhHHHHHHHhhcchhhhhcC
Q 010739 460 IQQSGNVEAYLNLCKRLSDTSL---IGPCLVYLYIKKYKLWIIKML 502 (502)
Q Consensus 460 ~~~~~~~~~a~~~~~~m~~~~~---~~~~li~~y~~~g~~~~~~~l 502 (502)
.|..+-...+++.-.+... -..+.++..++.|+.+.++.|
T Consensus 154 ---~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 196 (237)
T 3b7b_A 154 ---SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196 (237)
T ss_dssp ---HCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred ---CCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHH
Confidence 4777666666544322211 234567777888988887754
No 342
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=23.99 E-value=4.2e+02 Score=24.27 Aligned_cols=162 Identities=12% Similarity=0.152 Sum_probs=90.7
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcccc----HHHHHHHHHHHHHcCCCCchhchHHHHHHH
Q 010739 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNE----FGKALRKLKGYVRAGSIAELDGKNLGLIEK 315 (502)
Q Consensus 240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~~~~~~li~~ 315 (502)
+..-+++++++++|++++..=-. .+.+. ++ .|-+.-+++.+.+.++++|..... -|+..
T Consensus 41 i~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~-~Q~~sg~DL~~llvevy~~~~~~~~~~~~~-rL~~L 103 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASVSQ---------------TLLRS-GQGGSGGDLAVLLVDTFRQAGQRVDGASRG-KLLGC 103 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---------------HHHHT-TCHHHHHHHHHHHHHHHHHHTCCCCHHHHH-HHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHH---------------HHHHC-CCcchHHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Confidence 35556678899999987654221 12222 22 344444456667777777776655 46666
Q ss_pred Hhc-CcHH-----hHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010739 316 YQS-DLLA-----DGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS 388 (502)
Q Consensus 316 ~~~-g~~~-----~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 388 (502)
+.. ..-+ -..+...|-...| .+.-|......+-..|.+.+++.+|+..|- .|-.+...+|..++--+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 666 3211 1222334444444 444555677778888999999999988772 2445555677666644433
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHH
Q 010739 389 QNEGSAVSRLLSRIEVMNSLCKKKTLSW-LLRGYIKGGHINDAAETLTKML 438 (502)
Q Consensus 389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~ 438 (502)
.+... +...|-. .+--|.-.+++..|..+|+...
T Consensus 180 ~~~~~----------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESH----------------TAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGG----------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCc----------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33211 1222222 3334555567776666655544
No 343
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=23.88 E-value=2e+02 Score=25.28 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=39.0
Q ss_pred cccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHh
Q 010739 109 DRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMC 159 (502)
Q Consensus 109 ~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 159 (502)
..++|+.++.+..++.+.|-.+...+.+|+.+.+ +...+.-++.|+++.+
T Consensus 34 ~plspr~l~~~~k~ve~~g~~sPe~i~~f~ALse-~~~TP~D~~~ml~avl 83 (262)
T 1d1d_A 34 TPLEPKLITRLADTVRTKGLRSPITMAEVEALMS-SPLLPHDVTNLMRVIL 83 (262)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTSSHHHHHHHHHHT-SCCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHc-CCCChHHHHHHHHHHc
Confidence 3467888999999998888644789999997664 3378888999999655
No 344
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=23.73 E-value=93 Score=24.62 Aligned_cols=120 Identities=10% Similarity=-0.089 Sum_probs=49.9
Q ss_pred HHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhc
Q 010739 312 LIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVLAICASQ 389 (502)
Q Consensus 312 li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~~~~~~ 389 (502)
|..+...|+++....+++.-... ....+..-+ +.+...++.|+.+-+..++ +.|..++... -.+.+...+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNL-VNKPDERGF-TPLIWASAFGEIETVRFLL----EWGADPHILAKERESALSLASTG 79 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGG-GGCCCTTSC-CHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCccc-ccCCCCCCC-CHHHHHHHcCCHHHHHHHH----HcCCCchhhcccCCCHHHHHHHC
Confidence 34444447777766665321100 111121122 3344455667654444333 4455443211 12233344455
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010739 390 NEGSAVSRLLSRIEVMNSLCKKKTL--SWLLRGYIKGGHINDAAETLTKMLDLGLYPE 445 (502)
Q Consensus 390 ~~~~~a~~l~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 445 (502)
|+.+-+. .+...|..++.... .+-+...++.|+.+-+.. +.+.|..++
T Consensus 80 ~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~ga~~~ 129 (172)
T 3v30_A 80 GYTDIVG----LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA----LLARGADLT 129 (172)
T ss_dssp TCHHHHH----HHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTT
T ss_pred CCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHcCCCcc
Confidence 6655433 33344544432211 113333445566554333 334465544
No 345
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=23.57 E-value=2.1 Score=41.74 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh---hhcCCchhHH
Q 010739 410 KKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL---SDTSLIGPCL 486 (502)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m---~~~~~~~~~l 486 (502)
....|+.|-.+..+.|++.+|.+.|-+ .-|...|..++.++-+ +|..++..+.+... .+...+.+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~----~~~~edLv~yL~MaRk~~ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTT----SSCCTTHHHHHHTTSTTCCSTTTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHhcccccHHHH
Confidence 455777888888888888888765543 2355668888888876 78888888877433 2234488899
Q ss_pred HHHHHhhcchhhhh
Q 010739 487 VYLYIKKYKLWIIK 500 (502)
Q Consensus 487 i~~y~~~g~~~~~~ 500 (502)
+..|+|.|++..+.
T Consensus 123 i~ayAk~~rL~elE 136 (624)
T 3lvg_A 123 IFALAKTNRLAELE 136 (624)
T ss_dssp HHHHHTSCSSSTTT
T ss_pred HHHHHhhCcHHHHH
Confidence 99999999887653
No 346
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.49 E-value=79 Score=24.87 Aligned_cols=115 Identities=17% Similarity=0.023 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHH
Q 010739 345 ERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLY--DIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLS--WLLRG 420 (502)
Q Consensus 345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~--~li~~ 420 (502)
.+.+...++.|+.+....+++. .+..++.... .+.+...+..|+.+-+..+ .+.|..++..... +.+..
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL----LQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHH----HhcCCCCCccCCCCCCHHHH
Confidence 3445556778888777766643 2333322211 2344455566776654444 4455544433221 24444
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccccccccHHHHHHHHhh
Q 010739 421 YIKGGHINDAAETLTKMLDLGLYPEYM---DRVAVLQGLRKRIQQSGNVEAYLNLCKR 475 (502)
Q Consensus 421 ~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~~~~~a~~~~~~ 475 (502)
.+..|+.+-+ +.+.+.|..++.. -.+.|..++. .|..+-...+++.
T Consensus 82 A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~-----~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 82 ACSYGHYEVA----ELLVKHGAVVNVADLWKFTPLHEAAA-----KGKYEICKLLLQH 130 (165)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHH-----TTCHHHHHHHHHT
T ss_pred HHHcCcHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHH-----cCCHHHHHHHHHc
Confidence 5667776644 4445567665433 3345555554 4777766666554
No 347
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=23.41 E-value=1.1e+02 Score=28.10 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739 363 QLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406 (502)
Q Consensus 363 l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~ 406 (502)
++..+.+.|+.|...++.-++..+++.=.++.+.++|+.+-..|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 34444444555555555555555544444555555555544443
No 348
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.36 E-value=2.1e+02 Score=20.56 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 010739 135 EVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLF 213 (502)
Q Consensus 135 ~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l 213 (502)
.+++.+.+.|..+..-...+-. .- .....+.|.++++.+.+.|- ..|..++.++...|...-|..+
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~-~~--------~~t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQR-AG--------SGSRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHT-ST--------TCCHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHh-cc--------CCChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHHHH
Confidence 4777777777556665554433 10 12578999999999999865 3799999999887886665443
No 349
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.11 E-value=2.1e+02 Score=24.54 Aligned_cols=54 Identities=7% Similarity=-0.060 Sum_probs=44.4
Q ss_pred HhhHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC
Q 010739 172 VGDVVDLLVDMDCVGLKP-GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA 225 (502)
Q Consensus 172 ~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 225 (502)
.+.+..+|..|...|+-- -...|-.--..+-..|++.+|.++|+.=.+++-.|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 468889999999998743 456788888888999999999999998887776654
No 350
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.71 E-value=2.4e+02 Score=21.96 Aligned_cols=69 Identities=7% Similarity=0.140 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCChHHH-----HHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCC
Q 010739 118 LVLVYFSQEGRDSWCA-----LEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLK 188 (502)
Q Consensus 118 ~ll~~~~~~~~~~~~a-----~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 188 (502)
.|+..|.+++.. .-- .++.++|.+.- .++..+-.-++...-+|...+. ...++....++++.+++.|+.
T Consensus 64 ~LLe~~vkNcG~-~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~-~~~~l~~i~~~Y~~Lk~~G~~ 138 (140)
T 3ldz_A 64 TLLGACVSNCGK-IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK-NDPQLSLISAMIKNLKEQGVT 138 (140)
T ss_dssp HHHHHHHHHSCH-HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT-TCGGGTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHccCc
Confidence 355666666543 111 23334433222 2445555555554445544444 344555566666666666653
No 351
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=22.46 E-value=1.1e+02 Score=27.48 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=52.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739 398 LLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 398 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~ 477 (502)
++..+...|+.|......|++..+.+.=-++.++.+++.+...|..--.....+++....+.+-.....++.+++++.+.
T Consensus 189 L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp 268 (294)
T 3qwl_A 189 LLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIP 268 (294)
T ss_dssp HHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCC
Confidence 45566667776544333778888888778888888888888766433333334444444444444555677777777666
Q ss_pred hcC
Q 010739 478 DTS 480 (502)
Q Consensus 478 ~~~ 480 (502)
...
T Consensus 269 ~~d 271 (294)
T 3qwl_A 269 QDS 271 (294)
T ss_dssp STT
T ss_pred ccc
Confidence 543
No 352
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.18 E-value=2.3e+02 Score=20.60 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccccccccHHHHHHHHhhhh
Q 010739 429 DAAETLTKMLDLGLYPEYMDRVAVLQGLR-KRIQQSGNVEAYLNLCKRLS 477 (502)
Q Consensus 429 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~~~~~a~~~~~~m~ 477 (502)
.|.++.++...-|+.|+..+..-+++-|. -++...+.+++.+.+.-...
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~ 76 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTH 76 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 35566667777799999999999999984 33333445677776654433
No 353
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.17 E-value=4.7e+02 Score=24.18 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739 193 MIEKVISLYWEMEKKERAVLFVKAVL 218 (502)
Q Consensus 193 ~y~~li~~~~~~g~~~~A~~l~~~m~ 218 (502)
....+|.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45678888889999999999988864
No 354
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.87 E-value=2.5e+02 Score=22.08 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739 363 QLWEMKLVGKEADGDLYDIVLAICASQN-EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG 425 (502)
Q Consensus 363 l~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 425 (502)
+.+.|++.|++++..= ..++..+...+ ..-.|.++++.++..+...+..|...-+..+...|
T Consensus 4 ~~~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 4 NNQALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
No 355
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=21.61 E-value=3.9e+02 Score=22.97 Aligned_cols=89 Identities=11% Similarity=-0.043 Sum_probs=59.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC--CC-----ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCH
Q 010739 119 VLVYFSQEGRDSWCALEVFEWLKKEN--RV-----DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGF 191 (502)
Q Consensus 119 ll~~~~~~~~~~~~a~~~~~~m~~~~--~~-----~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 191 (502)
-++.+...+++ ++|.+++++.++.- .+ +.......++.-+ ..+.-.-+..+.+++.. .++.
T Consensus 24 eLDv~IA~r~f-eeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki--------~eR~~~L~~~L~~~l~~---~~~~ 91 (235)
T 2d2s_A 24 EIDIELARLRF-ESAVETLLDIESQLEDLSERISDEELMLLNLISLKI--------EQRREAISSKLSQSILS---SNEI 91 (235)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHHHHHHHHTC-------CHHHHHHHHHH--------HHHHHHHHHHHHHHHHT---CSSH
T ss_pred HHHHHHHHHhH-HHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHH--------HHHHHHHHHHHHHHHHh---cCCH
Confidence 35566777888 89999988776432 11 1123333344344 45555566666677644 4567
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010739 192 SMIEKVISLYWEMEKKERAVLFVKAVLS 219 (502)
Q Consensus 192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~ 219 (502)
......+..+.|-|+-++|.++|=+...
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 7788888999999999999999876653
No 356
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.44 E-value=3.5e+02 Score=22.34 Aligned_cols=159 Identities=9% Similarity=-0.091 Sum_probs=78.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc-C-C---CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC----CCCC
Q 010739 120 LVYFSQEGRDSWCALEVFEWLKKE-N-R---VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG----LKPG 190 (502)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~m~~~-~-~---~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g----~~p~ 190 (502)
+..-++.|+. ++++.+.+. | . .|..-++.+.- ++ ..|+.+-+..+++.-.... ...|
T Consensus 7 L~~A~~~g~~-----~~v~~Ll~~~g~~~~~~~~~g~t~L~~-A~--------~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 72 (232)
T 2rfa_A 7 LLLAAKENDV-----QALSKLLKFEGCEVHQRGAMGETALHI-AA--------LYDNLEAAMVLMEAAPELVFEPMTSEL 72 (232)
T ss_dssp HHHHHHTTCH-----HHHHHHHTTTCSCTTCCCTTSCCHHHH-HH--------HTTCHHHHHHHHHHCGGGGGCCCCSTT
T ss_pred HHHHHHcCCH-----HHHHHHHHhcCCCcccCCCCCCCHHHH-HH--------HcCCHHHHHHHHHcCchhccccccccC
Confidence 4444566665 344444443 4 2 24444455544 66 7788887777776532210 0111
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc--------cCCCCchHHHHHHHHhCcHHHHHHHHHHHHH
Q 010739 191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG--------QQGGPTGYLAWKMMVEGKYVDAIKLVIHLRE 262 (502)
Q Consensus 191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~--------~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~ 262 (502)
..-+ +.+...++.|+.+-+. .+.+.|..++...-.. ....-. ..+..++..|+.+-+ +.+.+
T Consensus 73 ~~g~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~ 142 (232)
T 2rfa_A 73 YEGQ-TALHIAVINQNVNLVR----ALLARGASVSARATGSVFHYRPHNLIYYGE-HPLSFAACVGSEEIV----RLLIE 142 (232)
T ss_dssp TTTC-CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCTTCSCCCCS-SHHHHHHHHTCHHHH----HHHHH
T ss_pred CCCc-CHHHHHHHcCCHHHHH----HHHhCCCCCCcccCCcceeecccccccCCC-CHHHHHHHcCCHHHH----HHHHH
Confidence 1222 3344456778766444 4455676666532100 000011 145555566765443 34445
Q ss_pred cCCCCCHhH--HHHHHHHHHhccccHHHHHHHHHHHHHcCCCC
Q 010739 263 SGLKPEVYS--YLIALTAVVKELNEFGKALRKLKGYVRAGSIA 303 (502)
Q Consensus 263 ~g~~p~~~t--y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p 303 (502)
.|..++... -.+.+...+.. +..+-+..+++-+.+.|..+
T Consensus 143 ~ga~~~~~d~~g~t~L~~A~~~-~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 143 HGADIRAQDSLGNTVLHILILQ-PNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TTCCTTCCCTTSCCHHHHHHTC-SCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHc-CChHHHHHHHHHHHhcCCch
Confidence 566655321 12344455555 56776666666667766544
No 357
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=21.44 E-value=2.3e+02 Score=22.52 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=10.6
Q ss_pred HHHHHHhcCcHHhHHHHH
Q 010739 311 GLIEKYQSDLLADGSRLS 328 (502)
Q Consensus 311 ~li~~~~~g~~~~a~~~~ 328 (502)
.|+.++..|+.+.+..++
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll 24 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLI 24 (169)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 466666556666655544
No 358
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.30 E-value=74 Score=20.70 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHHHcC
Q 010739 206 KKERAVLFVKAVLSRG 221 (502)
Q Consensus 206 ~~~~A~~l~~~m~~~~ 221 (502)
|++.|...|.++...|
T Consensus 35 d~~~A~~~F~~l~~~~ 50 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKG 50 (59)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5555555555555443
No 359
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.14 E-value=87 Score=20.41 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHH-Hhc
Q 010739 251 VDAIKLVIHLRESGLKPEVYSYLIALTAV-VKE 282 (502)
Q Consensus 251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~-~~~ 282 (502)
++|.+.|.+|....-.+...||.-.|..+ ++.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 57777777777665445566777777777 554
No 360
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.07 E-value=2.5e+02 Score=21.55 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010739 343 VHERLLAMYICAG-RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS 393 (502)
Q Consensus 343 ~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 393 (502)
.--.++..+...+ ..-.|.++++.+.+.+-..+..|.---|+.+...|-+.
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3444555555554 55667777777777666666666666666666655544
No 361
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.01 E-value=1.6e+02 Score=19.61 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHh
Q 010739 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMC 159 (502)
Q Consensus 116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 159 (502)
++.++..+++..-. +.++..+++..+.|..+..+|---++.++
T Consensus 5 ~~Qll~l~Aed~Ai-eDaiy~L~~aL~~g~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 5 LNQLYNLVAQDYAL-TDTIEALSRMLHRGTIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56777777777767 78999999999999888888887777666
No 362
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.00 E-value=3e+02 Score=21.52 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010739 343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS 393 (502)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 393 (502)
---.++..+...+..-.|.++++.+.+.+-..+..|.--.|..+...|-+.
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 444555566666666677777777777666666666666666666666554
No 363
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.56 E-value=3.9e+02 Score=22.58 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=41.8
Q ss_pred HHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-----HHHHHHHHHHHcCC
Q 010739 346 RLLAMYIC---AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS-----AVSRLLSRIEVMNS 407 (502)
Q Consensus 346 ~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~-----~a~~l~~~m~~~~~ 407 (502)
-+|+++-| ..+++.|+-.+-+|.+.|..|....=..++-+.-.-|.-+ .|...++.....|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 35566655 6788888888999988888887766666666665555433 34445566666663
Done!