BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010740
(502 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/468 (68%), Positives = 388/468 (82%), Gaps = 14/468 (2%)
Query: 24 PHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPG 83
P + +HR + ++ C + ++ S KKRLWK+GE+PG++E
Sbjct: 18 PEGKRRFRHR----DVGIVRCVLAASK------SSPGSVTKKRLWKDGEFPGITEP---- 63
Query: 84 YRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK 143
+RTPIKN+KKKL+R++KA WVNTV ET SD + KKQW QAL+VF+ML+EQ FYQPK
Sbjct: 64 VNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPK 123
Query: 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLN 203
EGTYMKLLVLLGKSGQP A+K+F+EM+EEG+EPT ELYTALLAAY R++LID+AF L+
Sbjct: 124 EGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILD 183
Query: 204 QMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA 263
+MK+ P CQPDV+TYSTL+KACVDA +F+L+++LY++MDER +TPNTVTQNIVL GYG+
Sbjct: 184 KMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRV 243
Query: 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRT 323
G FDQME+VLS ML S CKPDVWTMN ILSVF N G++DMME WYEKFRNFGI+PETRT
Sbjct: 244 GRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRT 303
Query: 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH 383
FNILIG+YGKKRMYDKMSSVMEYMRKL+FPWT+STYNN+IEAF+D+GDAK+ME TF+QM
Sbjct: 304 FNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMR 363
Query: 384 AEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443
+EGMKADTKTFCCLINGYANAGLFHKVISSV+LA+K +I EN +FYNAVISAC KADDL+
Sbjct: 364 SEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLI 423
Query: 444 EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491
EMERVY RMKE+ C DS TF IM EAY KEGMNDK+Y LEQE+ +++
Sbjct: 424 EMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLM 471
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Query: 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV-R 415
TY ++ G + F++M EG++ + + L+ Y + L S + +
Sbjct: 125 GTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDK 184
Query: 416 LASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ S Q +V Y+ ++ AC+ A ++ +YK M E+ P++ T +I+ Y + G
Sbjct: 185 MKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVG 244
Query: 476 MNDKVYALEQEKLQMLLEASGHWQQNI 502
D++ + + L W NI
Sbjct: 245 RFDQMEKVLSDMLVSTACKPDVWTMNI 271
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 332 bits (851), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 170/413 (41%), Positives = 244/413 (59%), Gaps = 7/413 (1%)
Query: 87 KRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGT 146
+R K++ +K +K K TV E+ + + +W A+QVFE+L+EQ +Y+P G
Sbjct: 95 RREATKSIIEK--KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGI 152
Query: 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMK 206
Y+KL+V+LGK QPE A ++F EM+ EG E+YTAL++AY R+ D AF L +MK
Sbjct: 153 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 212
Query: 207 TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF 266
+ NCQPDV+TYS LIK+ + F+ ++ L DM + + PNT+T N ++ YGKA MF
Sbjct: 213 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMF 272
Query: 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNI 326
+ME L ML CKPD WTMN+ L F GQ++MME YEKF++ GI+P RTFNI
Sbjct: 273 VEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNI 332
Query: 327 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386
L+ +YGK Y KMS+VMEYM+K + WT TYN VI+AF GD K MEY F M +E
Sbjct: 333 LLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSER 392
Query: 387 MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME 446
+ T C L+ Y A K+ +R I ++ F+N ++ A + + EM+
Sbjct: 393 IFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMK 452
Query: 447 RVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQ 499
V + M++K +PD T+ M +AY GM V ++L ++E+ G Q
Sbjct: 453 GVLELMEKKGFKPDKITYRTMVKAYRISGMTTHV-----KELHGVVESVGEAQ 500
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 322 bits (826), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 154/397 (38%), Positives = 248/397 (62%), Gaps = 4/397 (1%)
Query: 96 KKLERKAKAKA----WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLL 151
K +ERKA ++ W V E + + + +W AL++F +L++Q +Y+P+ TY KL
Sbjct: 42 KGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLF 101
Query: 152 VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNC 211
+LG QP+ A +F M+ EG++PT ++YT+L++ Y ++ L+D+AF TL MK++ +C
Sbjct: 102 KVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDC 161
Query: 212 QPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER 271
+PDV+T++ LI C RF+L++++ +M V +TVT N ++ GYGKAGMF++ME
Sbjct: 162 KPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMES 221
Query: 272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY 331
VL+ M+E PDV T+N+I+ + N + ME WY +F+ G+ P+ TFNILI ++
Sbjct: 222 VLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSF 281
Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
GK MY KM SVM++M K F T+ TYN VIE F G + M+ F +M +G+K ++
Sbjct: 282 GKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNS 341
Query: 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKR 451
T+C L+N Y+ AGL K+ S +R + + F+N +I+A +A DL M+ +Y +
Sbjct: 342 ITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQ 401
Query: 452 MKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL 488
M+E+ C+PD TF+ M + Y G+ D V LE++ +
Sbjct: 402 MEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMI 438
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 136 EQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI 195
E+ F+ TY ++ GK+G+ E VF +M +G++P Y +L+ AY + L+
Sbjct: 298 EKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLV 357
Query: 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI 255
+ L Q+ + D ++ +I A A ++ LY M+ER P+ +T
Sbjct: 358 VKIDSVLRQIVN-SDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFAT 416
Query: 256 VLGGYGKAGMFDQMERVLSGMLESA 280
++ Y G+FD ++ + M+ S
Sbjct: 417 MIKTYTAHGIFDAVQELEKQMISSG 441
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 175/354 (49%), Gaps = 5/354 (1%)
Query: 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
+W Q L+VF +++Q +Y P G Y KL+ ++GK GQ +A +F+EM G P +Y
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171
Query: 183 TALLAAYC----RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLY 238
AL+ A+ + +++ L++MK + CQP+V TY+ L++A + + + + L+
Sbjct: 172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231
Query: 239 QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298
+D+D V+P+ T N V+ YGK GM +ME VL+ M S CKPD+ T N ++ +
Sbjct: 232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 290
Query: 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST 358
K + + ME+ ++ P TFN +I YGK RM DK V + M + + + T
Sbjct: 291 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 350
Query: 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418
Y +I + G FE++ T ++ Y GL+ + AS
Sbjct: 351 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 410
Query: 419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472
++ + S Y + A KAD +++ + K+M++ P+ F E +
Sbjct: 411 AFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFG 464
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 125/310 (40%), Gaps = 39/310 (12%)
Query: 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY----GKAGMFDQ 268
PD YS LI + + L+ +M P+ N ++ + KA ++
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEK 190
Query: 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI 328
+ L M C+P+V T N +L FA G+VD + ++ + P+ TFN ++
Sbjct: 191 VRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVM 250
Query: 329 GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK 388
AYGK M +M +V+ MR + T+N +I+++ + + ME TF+ + K
Sbjct: 251 DAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEK 310
Query: 389 ADTKTFCCLINGYANAGLFHKV----------------------------ISSVRLASKL 420
TF +I Y A + K SV A ++
Sbjct: 311 PTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREI 370
Query: 421 --QIAEN-----VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473
++ E+ S NA++ + +E ++++ PD+ T+ + +AY K
Sbjct: 371 FEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTK 430
Query: 474 EGMNDKVYAL 483
M ++V L
Sbjct: 431 ADMKEQVQIL 440
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 5/224 (2%)
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
GK+ + Q V M + PD + ++SV KGQ M + + +N G P+
Sbjct: 108 GKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPD 167
Query: 321 TRTFNILIGAY----GKKRMYDKMSSVMEYMRKLQFPWTSS-TYNNVIEAFSDMGDAKHM 375
+N LI A+ K + +K+ ++ M+ ++ + TYN ++ AF+ G +
Sbjct: 168 ASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQV 227
Query: 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435
F+ + + D TF +++ Y G+ ++ + + + ++ +N +I +
Sbjct: 228 NALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDS 287
Query: 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
K + +ME+ +K + +P TF+ M Y K M DK
Sbjct: 288 YGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDK 331
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Query: 326 ILIGAYGKKRMYDKMSSVMEYMRKLQ-FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA 384
+L GK + + V +M+K + + + Y+ +I G + + F +M
Sbjct: 102 LLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKN 161
Query: 385 EGMKADTKTFCCLINGYANAGLFHKVISSVR-LASKLQIAE----NVSFYNAVISACIKA 439
G + D + LI + + K + VR K++ E NV YN ++ A ++
Sbjct: 162 SGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQS 221
Query: 440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
+ ++ ++K + PD TF+ + +AY K GM
Sbjct: 222 GKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGM 258
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 169/356 (47%), Gaps = 13/356 (3%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+A QVFE +K F K TY LL + GKS +P+ A KV NEMV G P+ Y +L
Sbjct: 297 EAAQVFEEMKAAGFSYDKV-TYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSL 355
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
++AY R+ ++DEA NQM +PDV+TY+TL+ A + E +++++M
Sbjct: 356 ISAYARDGMLDEAMELKNQMAE-KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC--KPDVWTMNTILSVFANKGQVD 303
PN T N + YG G F +M ++ E C PD+ T NT+L+VF G
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFTEMMKIFD---EINVCGLSPDIVTWNTLLAVFGQNGMDS 471
Query: 304 MMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI 363
+ +++ + G PE TFN LI AY + +++ +V M STYN V+
Sbjct: 472 EVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVL 531
Query: 364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA---GLFHKVISSVRLASKL 420
A + G + E +M K + T+C L++ YAN GL H + V
Sbjct: 532 AALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV-- 589
Query: 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
I ++ C K D L E ER + +KE+ PD T + M Y + M
Sbjct: 590 -IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQM 644
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 171/372 (45%), Gaps = 4/372 (1%)
Query: 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP-ELARKVFNEMVEEGIEPTPEL 181
++ +A+ VF+ ++E +P TY +L + GK G P + +M +GI P
Sbjct: 223 RYREAVNVFKKMEEDGC-KPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYT 281
Query: 182 YTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDM 241
Y L+ R SL EA +MK D TY+ L+ + R + + +M
Sbjct: 282 YNTLITCCKRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 340
Query: 242 DERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQ 301
+P+ VT N ++ Y + GM D+ + + M E T KPDV+T T+LS F G+
Sbjct: 341 VLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT-KPDVFTYTTLLSGFERAGK 399
Query: 302 VDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNN 361
V+ +E+ RN G P TFN I YG + + +M + + + T+N
Sbjct: 400 VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNT 459
Query: 362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ 421
++ F G + F++M G + +TF LI+ Y+ G F + ++ R
Sbjct: 460 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG 519
Query: 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY 481
+ ++S YN V++A + + E+V M++ C+P+ T+ + AYA ++
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMH 579
Query: 482 ALEQEKLQMLLE 493
+L +E ++E
Sbjct: 580 SLAEEVYSGVIE 591
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 176/391 (45%), Gaps = 44/391 (11%)
Query: 127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
A+ +FE ++ +P T+ + + G G+ K+F+E+ G+ P + LL
Sbjct: 403 AMSIFEEMRNAGC-KPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL 461
Query: 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV 246
A + +N + E +MK P+ T++TLI A FE T+Y+ M + V
Sbjct: 462 AVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV 520
Query: 247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM- 305
TP+ T N VL + GM++Q E+VL+ M E CKP+ T ++L +AN ++ +M
Sbjct: 521 TPDLSTYNTVLAALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLLHAYANGKEIGLMH 579
Query: 306 ----------------------------------ERWYEKFRNFGIDPETRTFNILIGAY 331
ER + + + G P+ T N ++ Y
Sbjct: 580 SLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIY 639
Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
G+++M K + V++YM++ F + +TYN+++ S D E ++ A+G+K D
Sbjct: 640 GRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDI 699
Query: 392 KTFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACIKADDLMEMERV 448
++ +I Y ++ + R+ S+++ I +V YN I + E V
Sbjct: 700 ISYNTVIYAYCRN---TRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGV 756
Query: 449 YKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
+ M + CRP+ T++ + + Y K D+
Sbjct: 757 VRYMIKHGCRPNQNTYNSIVDGYCKLNRKDE 787
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 155/368 (42%), Gaps = 40/368 (10%)
Query: 122 KQWFQALQVFEMLKEQPFYQP--KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP 179
K++ AL+ F+ +Q YQ ++ +LGK G+ A +FN + E+G
Sbjct: 149 KKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGF---- 204
Query: 180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQ 239
SL DVY+Y++LI A ++ R+ +++
Sbjct: 205 -------------SL-------------------DVYSYTSLISAFANSGRYREAVNVFK 232
Query: 240 DMDERSVTPNTVTQNIVLGGYGKAGM-FDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298
M+E P +T N++L +GK G ++++ ++ M +S PD +T NT+++
Sbjct: 233 KMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM-KSDGIAPDAYTYNTLITCCKR 291
Query: 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST 358
+ +E+ + G + T+N L+ YGK + V+ M F + T
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVT 351
Query: 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418
YN++I A++ G QM +G K D T+ L++G+ AG +S
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMR 411
Query: 419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478
N+ +NA I EM +++ + PD T++ + + + GM+
Sbjct: 412 NAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDS 471
Query: 479 KVYALEQE 486
+V + +E
Sbjct: 472 EVSGVFKE 479
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 2/161 (1%)
Query: 108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVF 167
+ T+ S + ++ +A V + +KE+ F P TY L+ + +S + ++
Sbjct: 629 ITTLNSMVSIYGRRQMVAKANGVLDYMKERGF-TPSMATYNSLMYMHSRSADFGKSEEIL 687
Query: 168 NEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD 227
E++ +GI+P Y ++ AYCRN+ + +A ++M+ PDV TY+T I +
Sbjct: 688 REILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN-SGIVPDVITYNTFIGSYAA 746
Query: 228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268
FE + + M + PN T N ++ GY K D+
Sbjct: 747 DSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDE 787
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 10/217 (4%)
Query: 266 FD--QMERVLSGMLESATCKPDVWTMNTILSVFANKG---QVDMMER---WYEKFRNFGI 317
FD Q++ VLS + E KP+ T + +L+ G + D+ R W+ K +++
Sbjct: 111 FDSGQLDSVLSELFEPFKDKPES-TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQS 169
Query: 318 DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEY 377
+ I+I GK+ +++ +++ F +Y ++I AF++ G +
Sbjct: 170 MLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVN 229
Query: 378 TFEQMHAEGMKADTKTFCCLINGYANAGL-FHKVISSVRLASKLQIAENVSFYNAVISAC 436
F++M +G K T+ ++N + G ++K+ S V IA + YN +I+ C
Sbjct: 230 VFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCC 289
Query: 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473
+ E +V++ MK D T++ + + Y K
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGK 326
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 168/349 (48%), Gaps = 10/349 (2%)
Query: 132 EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191
EM E + P TY L+ K G+ + A ++F+EM + ++PT ++YT LL Y +
Sbjct: 222 EMCNEGDCF-PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280
Query: 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV 251
+++A +MK C P VYTY+ LIK A R + Y+DM +TP+ V
Sbjct: 281 VGKVEKALDLFEEMKR-AGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVV 339
Query: 252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL-SVFANKGQVDMMERWYE 310
N ++ GK G +++ V S M C P V + NT++ ++F +K V + W++
Sbjct: 340 FLNNLMNILGKVGRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398
Query: 311 KFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG 370
K + + P T++ILI Y K +K ++E M + FP + Y ++I A +G
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA---LG 455
Query: 371 DAKHMEYT---FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS 427
AK E F+++ ++ + +I + G + + +V
Sbjct: 456 KAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515
Query: 428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
YNA++S +KA + E + ++M+E CR D + +I+ +A+ G+
Sbjct: 516 AYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGV 564
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 143/358 (39%), Gaps = 52/358 (14%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+AL VF K + +P TY ++++L + GQ E +V+ EM EG
Sbjct: 180 KALSVFYQAKGRKC-KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEG----------- 227
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
+C PD TYS LI + R + L+ +M +
Sbjct: 228 ------------------------DCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNC 263
Query: 246 VTPNTVTQNIVLGGYGKAG-------MFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298
+ P +LG Y K G +F++M+R A C P V+T ++
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKR--------AGCSPTVYTYTELIKGLGK 315
Query: 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST 358
G+VD +Y+ G+ P+ N L+ GK +++++V M + T +
Sbjct: 316 AGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVS 375
Query: 359 YNNVIEA-FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLA 417
YN VI+A F + F++M A+ + T+ LI+GY K + +
Sbjct: 376 YNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEM 435
Query: 418 SKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ + Y ++I+A KA ++K +KE S +++M + + K G
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCG 493
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 7/234 (2%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P E TY L+ K+ + E A + EM E+G P P Y +L+ A + + A
Sbjct: 407 PSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANEL 466
Query: 202 LNQMK-TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
++K N VY + +IK + L+ +M + P+ N ++ G
Sbjct: 467 FKELKENFGNVSSRVY--AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
KAGM ++ +L M E+ C+ D+ + N IL+ FA G +E ++ GI P+
Sbjct: 525 VKAGMINEANSLLRKMEENG-CRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPD 583
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH 374
T+N L+G + M+++ + +M M+ F + + TY+++++A +G+ H
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDA---VGNVDH 634
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 155/383 (40%), Gaps = 70/383 (18%)
Query: 127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
A+++F+ +K+ QP E Y LL + K G+ E A +F EM G PT YT L+
Sbjct: 252 AIRLFDEMKDNCM-QPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 187 AAYCRNSLIDEAF---------------VTLNQM----------KTLPN---------CQ 212
+ +DEA+ V LN + + L N C
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370
Query: 213 PDVYTYSTLIKACVDA-MRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER 271
P V +Y+T+IKA ++ + + + M SV+P+ T +I++ GY K ++
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALL 430
Query: 272 VLSGMLE-------SATC----------------------KPDVWTMNT-----ILSVFA 297
+L M E +A C K + +++ ++ F
Sbjct: 431 LLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFG 490
Query: 298 NKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS 357
G++ + + +N G P+ +N L+ K M ++ +S++ M + +
Sbjct: 491 KCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADIN 550
Query: 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLA 417
++N ++ F+ G + FE + G+K D T+ L+ +A+AG+F + +R
Sbjct: 551 SHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREM 610
Query: 418 SKLQIAENVSFYNAVISACIKAD 440
+ Y++++ A D
Sbjct: 611 KDKGFEYDAITYSSILDAVGNVD 633
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 123/308 (39%), Gaps = 5/308 (1%)
Query: 182 YTALLAAYCRNSLIDEAFVTLNQM--KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQ 239
Y L+ L E + T+ ++ T + P V S L+KA A +++
Sbjct: 129 YMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVL--SELVKALGRAKMVSKALSVFY 186
Query: 240 DMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK 299
R P + T N V+ + G +++ V + M C PD T + ++S +
Sbjct: 187 QAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKL 246
Query: 300 GQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY 359
G+ D R +++ ++ + P + + L+G Y K +K + E M++ T TY
Sbjct: 247 GRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTY 306
Query: 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK 419
+I+ G ++ M +G+ D L+N G ++ +
Sbjct: 307 TELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGM 366
Query: 420 LQIAENVSFYNAVISACIKAD-DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478
+ V YN VI A ++ + E+ + +MK P T+SI+ + Y K +
Sbjct: 367 WRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVE 426
Query: 479 KVYALEQE 486
K L +E
Sbjct: 427 KALLLLEE 434
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 138 bits (348), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 177/409 (43%), Gaps = 36/409 (8%)
Query: 103 KAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPEL 162
K K +N A F + + W ++L++F+ ++ Q + +P E Y ++ LLG+ G +
Sbjct: 100 KNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDK 159
Query: 163 ARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222
+VF+EM +G+ + YTAL+ AY RN + + L++MK P + TY+T+I
Sbjct: 160 CLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN-EKISPSILTYNTVI 218
Query: 223 KACV-DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV--------- 272
AC + +E + L+ +M + P+ VT N +L G+ D+ E V
Sbjct: 219 NACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGI 278
Query: 273 -------------------------LSGMLESATCKPDVWTMNTILSVFANKGQVDMMER 307
L G + S PD+ + N +L +A G +
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338
Query: 308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS 367
+ + + G P T+++L+ +G+ YD + + M+ ++TYN +IE F
Sbjct: 339 VFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398
Query: 368 DMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS 427
+ G K + F M E ++ D +T+ +I GL ++ + I +
Sbjct: 399 EGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSK 458
Query: 428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
Y VI A +A E + M E P ETF + ++A+ G+
Sbjct: 459 AYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL 507
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 146/347 (42%), Gaps = 2/347 (0%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P TY L+ GK + E + EM G P Y LL AY ++ I EA
Sbjct: 280 PDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGV 339
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
+QM+ C P+ TYS L+ + R++ + L+ +M + P+ T NI++ +G
Sbjct: 340 FHQMQA-AGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET 321
+ G F ++ + M+E +PD+ T I+ G + + + I P +
Sbjct: 399 EGGYFKEVVTLFHDMVEE-NIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSS 457
Query: 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
+ + +I A+G+ +Y++ M ++ + T+++++ +F+ G K E +
Sbjct: 458 KAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSR 517
Query: 382 MHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441
+ G+ + TF I Y G F + + + K + + AV+S A
Sbjct: 518 LVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARL 577
Query: 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL 488
+ E ++ MK P + +M Y K D V L +E L
Sbjct: 578 VDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 165/339 (48%), Gaps = 8/339 (2%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
+QP E TY +L ++ KSGQ LA ++ +M E I+ Y+ ++ C++ +D AF
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
N+M+ + + D+ Y+TLI+ A R++ L +DM +R +TP+ V + ++
Sbjct: 268 NLFNEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDC 326
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
+ K G + E + M++ PD T +++ F + Q+D + + G P
Sbjct: 327 FVKEGKLREAEELHKEMIQRGI-SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP 385
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT---SSTYNNVIEAFSDMGDAKHME 376
RTFNILI Y K + D +E RK+ + TYN +I+ F ++G + +
Sbjct: 386 NIRTFNILINGYCKANLID---DGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442
Query: 377 YTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436
F++M + ++ D ++ L++G + G K + K ++ ++ YN +I
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502
Query: 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
A + + ++ + K +PD +T++IM K+G
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 6/355 (1%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y+P T+ L+ L G+ A ++ + MVE G +PT AL+ C N + +A
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAV 197
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
+ +++M QP+ TY ++K + + L L + M+ER + + V +I++ G
Sbjct: 198 LLIDRMVE-TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
K G D + + M E K D+ T++ F G+ D + I P
Sbjct: 257 LCKDGSLDNAFNLFNEM-EIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITP 315
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
+ F+ LI + K+ + + + M + + TY ++I+ F +
Sbjct: 316 DVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHML 375
Query: 380 EQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439
+ M ++G + +TF LINGY A L + R S + + YN +I +
Sbjct: 376 DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 435
Query: 440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY----ALEQEKLQM 490
L + +++ M + RPD ++ I+ + G +K +E+ K+++
Sbjct: 436 GKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 2/257 (0%)
Query: 137 QPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID 196
Q P TY L+ K Q + A + + MV +G P + L+ YC+ +LID
Sbjct: 345 QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLID 404
Query: 197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIV 256
+ +M +L D TY+TLI+ + + E+ + L+Q+M R V P+ V+ I+
Sbjct: 405 DGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKIL 463
Query: 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316
L G G ++ + +E + + D+ N I+ N +VD + G
Sbjct: 464 LDGLCDNGEPEKALEIFE-KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522
Query: 317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHME 376
+ P+ +T+NI+IG KK + + M + TYN +I A GDA
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSA 582
Query: 377 YTFEQMHAEGMKADTKT 393
E++ G D T
Sbjct: 583 KLIEEIKRCGFSVDAST 599
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 12/322 (3%)
Query: 163 ARKVFNEMVEEGIEPTPEL--YTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST 220
A +F EM P P L ++ L + R D QM+ L ++YT S
Sbjct: 56 AVDLFQEMTRS--RPRPRLIDFSRLFSVVARTKQYDLVLDLCKQME-LKGIAHNLYTLSI 112
Query: 221 LIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA 280
+I C + L + + + P+TVT + ++ G G + ++ M+E
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172
Query: 281 TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKM 340
KP + T+N +++ G+V ++ G P T+ ++ K +
Sbjct: 173 H-KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKS---GQT 228
Query: 341 SSVMEYMRKLQ---FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397
+ ME +RK++ + Y+ +I+ G + F +M +G KAD + L
Sbjct: 229 ALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTL 288
Query: 398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC 457
I G+ AG + +R K +I +V ++A+I +K L E E ++K M ++
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348
Query: 458 RPDSETFSIMTEAYAKEGMNDK 479
PD+ T++ + + + KE DK
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDK 370
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 6/207 (2%)
Query: 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS 342
+P + + + SV A Q D++ ++ GI T +I+I + R S
Sbjct: 69 RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFS 128
Query: 343 VMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402
M + KL + + T++ +I G ++M G K T L+NG
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLC 188
Query: 403 NAGLFHKVISSVRLASKL---QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459
G KV +V L ++ N Y V+ K+ + ++M+E+ +
Sbjct: 189 LNG---KVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKL 245
Query: 460 DSETFSIMTEAYAKEGMNDKVYALEQE 486
D+ +SI+ + K+G D + L E
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNE 272
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 152/340 (44%), Gaps = 2/340 (0%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y+P TY LL + GK+G A V EM E Y L+AAY R EA
Sbjct: 312 YEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAA 371
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
+ +M T P+ TY+T+I A A + + L+ M E PNT T N VL
Sbjct: 372 GVI-EMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL 430
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
GK ++M ++L M +S C P+ T NT+L++ NKG + R + + ++ G +P
Sbjct: 431 LGKKSRSNEMIKMLCDM-KSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEP 489
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
+ TFN LI AYG+ S + M + F +TYN ++ A + GD + E
Sbjct: 490 DRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVI 549
Query: 380 EQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439
M ++G K ++ ++ YA G + + + QI + ++ A K
Sbjct: 550 SDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKC 609
Query: 440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
L ER + K+ +PD F+ M + + M D+
Sbjct: 610 RALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQ 649
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 143/334 (42%), Gaps = 2/334 (0%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P T+ +L L G G + +VF EM G EP + + L++AY R +A
Sbjct: 454 PNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKM 513
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
+M T V TY+ L+ A + E + DM + P + +++L Y
Sbjct: 514 YGEM-TRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA 572
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET 321
K G + +ER+ ++ P + T+L + ER + F+ G P+
Sbjct: 573 KGGNYLGIERI-ENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDM 631
Query: 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
FN ++ + + MYD+ ++E +R+ TYN++++ + G+ E +
Sbjct: 632 VIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT 691
Query: 382 MHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441
+ +K D ++ +I G+ GL + + + ++ I + YN +S
Sbjct: 692 LEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751
Query: 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
E+E V + M + CRP+ TF ++ + Y + G
Sbjct: 752 FAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 131/270 (48%), Gaps = 6/270 (2%)
Query: 214 DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL 273
DV Y+T++ A ++E L++ M E +P VT N++L +GK G + R +
Sbjct: 209 DVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMG---RSWRKI 265
Query: 274 SGMLE---SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA 330
G+L+ S K D +T +T+LS A +G + + ++ + ++ G +P T T+N L+
Sbjct: 266 LGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQV 325
Query: 331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD 390
+GK +Y + SV++ M + P S TYN ++ A+ G +K E M +G+ +
Sbjct: 326 FGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385
Query: 391 TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK 450
T+ +I+ Y AG + + + N YNAV+S K EM ++
Sbjct: 386 AITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLC 445
Query: 451 RMKEKHCRPDSETFSIMTEAYAKEGMNDKV 480
MK C P+ T++ M +GM+ V
Sbjct: 446 DMKSNGCSPNRATWNTMLALCGNKGMDKFV 475
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 155/393 (39%), Gaps = 52/393 (13%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+A V EM+ ++ P TY ++ GK+G+ + A K+F M E G P Y A+
Sbjct: 369 EAAGVIEMMTKKGV-MPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAV 427
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
L+ + S +E L MK+ C P+ T++T++ C + + + ++++M
Sbjct: 428 LSLLGKKSRSNEMIKMLCDMKS-NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCG 486
Query: 246 VTPNTVTQNIVLGGYGKAG-------MFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298
P+ T N ++ YG+ G M+ +M R A V T N +L+ A
Sbjct: 487 FEPDRDTFNTLISAYGRCGSEVDASKMYGEMTR--------AGFNACVTTYNALLNALAR 538
Query: 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ-FP-W-- 354
KG E ++ G P ++++++ Y K Y + + +++ Q FP W
Sbjct: 539 KGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWML 598
Query: 355 -------------------------------TSSTYNNVIEAFSDMGDAKHMEYTFEQMH 383
+N+++ F+ E E +
Sbjct: 599 LRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIR 658
Query: 384 AEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443
+G+ D T+ L++ Y G K ++ K Q+ ++ YN VI + +
Sbjct: 659 EDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQ 718
Query: 444 EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
E R+ M E+ RP T++ Y GM
Sbjct: 719 EAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
QA + E ++E P TY L+ + + G+ A ++ + + ++P Y +
Sbjct: 649 QAEGILESIREDGL-SPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTV 707
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
+ +CR L+ EA L++M T +P ++TY+T + F IE + + M +
Sbjct: 708 IKGFCRRGLMQEAVRMLSEM-TERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKND 766
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQ 268
PN +T +V+ GY +AG + +
Sbjct: 767 CRPNELTFKMVVDGYCRAGKYSE 789
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/168 (18%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
+ I + G++ Y + +++ + ++ Y ++ A+S G + FE+
Sbjct: 176 QVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFER 235
Query: 382 MHAEGMKADTKTFCCLINGYANAGLFHKVISSV--RLASK-LQIAENVSFYNAVISACIK 438
M G T+ +++ + G + I V + SK L+ E + V+SAC +
Sbjct: 236 MKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTC--STVLSACAR 293
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
L E + + +K P + T++ + + + K G+ + ++ +E
Sbjct: 294 EGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKE 341
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 180/414 (43%), Gaps = 37/414 (8%)
Query: 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNE 169
TV+ + LK + +AL + + + E F QP E TY +L L KSG LA +F +
Sbjct: 177 TVSTLINGLCLKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSALALDLFRK 235
Query: 170 MVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM------------------------ 205
M E I+ + Y+ ++ + C++ D+A N+M
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
Query: 206 -----KTL-----PNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI 255
K L N PDV T+S LI V + + LY +M R + P+T+T N
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355
Query: 256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF 315
++ G+ K + ++ M+ S C+PD+ T + +++ + +VD R + + +
Sbjct: 356 LIDGFCKENCLHEANQMFDLMV-SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414
Query: 316 GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375
G+ P T T+N L+ + + + + + M P + TY +++ D G+
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKA 474
Query: 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435
FE+M M + +I+G NA S S + +V YN +I
Sbjct: 475 LEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Query: 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY-AKEGMNDKVYALEQEKL 488
K L E + ++++MKE C PD T++I+ A+ G+ V +E+ K+
Sbjct: 535 LCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKV 588
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 88/406 (21%), Positives = 153/406 (37%), Gaps = 72/406 (17%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y+P T+ L+ G+ A + + MVE P + L+ C + EA
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
V +++M QPD TY ++ + L L++ M+ER++ + V +IV+
Sbjct: 196 VLIDRMVEY-GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254
Query: 260 YGKAGMFDQMERVLSGM--------------LESATCK--------------------PD 285
K G FD + + M L C PD
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
Query: 286 VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN-------------------- 325
V T + ++ VF +G++ + Y + GI P+T T+N
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 374
Query: 326 ---------------ILIGAYGK-KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369
ILI +Y K KR+ D M E K P T TYN ++ F
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNT-ITYNTLVLGFCQS 433
Query: 370 GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFY 429
G + F++M + G+ T+ L++G + G +K + K ++ + Y
Sbjct: 434 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 493
Query: 430 NAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
N +I A + + ++ + +K +PD T+++M K+G
Sbjct: 494 NIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKG 539
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 153/366 (41%), Gaps = 13/366 (3%)
Query: 113 ETFSDHVLKKQWFQALQVFE-MLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMV 171
E + ++ + A+ +FE M++ +P P + + +L + ++ Q +L M
Sbjct: 40 ERLRNGIVDIKVNDAIDLFESMIQSRPLPTPID--FNRLCSAVARTKQYDLVLGFCKGME 97
Query: 172 EEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA-CVDAMR 230
GIE T ++ YCR + AF L + L +PD T+STL+ C++
Sbjct: 98 LNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGY-EPDTITFSTLVNGFCLEGRV 156
Query: 231 FELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMN 290
E + L M E P+ VT + ++ G G + ++ M+E +PD T
Sbjct: 157 SEAV-ALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGF-QPDEVTYG 214
Query: 291 TILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL 350
+L+ G + + K I ++I+I + K +D S+ M
Sbjct: 215 PVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKV 410
TY+++I + G +M + D TF LI+ + G K+
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEG---KL 331
Query: 411 ISSVRLASKL---QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM 467
+ + L +++ IA + YN++I K + L E +++ M K C PD T+SI+
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391
Query: 468 TEAYAK 473
+Y K
Sbjct: 392 INSYCK 397
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 120/313 (38%), Gaps = 37/313 (11%)
Query: 163 ARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222
A +F M++ PTP + L +A R D M+ L + D+YT + +I
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGME-LNGIEHDMYTMTIMI 112
Query: 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC 282
+ ++ + P+T+T + ++ G+ G + ++ M+E
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ- 171
Query: 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS 342
+PD+ T++T+++ KG+V ++ +G P+ T+ ++ K
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 343 VMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402
+ M + + Y+ VI++ G F +M +G+KAD T+ LI G
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE 462
N G K DD +M R M ++ PD
Sbjct: 292 NDG--------------------------------KWDDGAKMLR---EMIGRNIIPDVV 316
Query: 463 TFSIMTEAYAKEG 475
TFS + + + KEG
Sbjct: 317 TFSALIDVFVKEG 329
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 83/203 (40%)
Query: 284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV 343
P N + S A Q D++ + + GI+ + T I+I Y +K+ SV
Sbjct: 68 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 127
Query: 344 MEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403
+ KL + + T++ ++ F G ++M + D T LING
Sbjct: 128 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCL 187
Query: 404 AGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET 463
G + + + + + Y V++ K+ + ++++M+E++ +
Sbjct: 188 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247
Query: 464 FSIMTEAYAKEGMNDKVYALEQE 486
+SI+ ++ K+G D +L E
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNE 270
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 165/344 (47%), Gaps = 4/344 (1%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G+P+LA + N+M + IE +Y+ ++ + C+ +D+A
Sbjct: 202 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M +PDV+TYS+LI + R+ L DM ER + PN VT N ++ +
Sbjct: 262 LFTEMDN-KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + E++ M++ + P++ T N++++ F ++D ++ + + P+
Sbjct: 321 AKEGKLIEAEKLFDEMIQRSI-DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379
Query: 321 TRTFNILIGAYGK-KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
T+N LI + K K++ D M + R+ + TY +I F D + + F
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRR-GLVGNTVTYTTLIHGFFQASDCDNAQMVF 438
Query: 380 EQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439
+QM ++G+ + T+ L++G G K + K ++ ++ YN + KA
Sbjct: 439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 498
Query: 440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ + ++ + K +PD ++ M + K+G+ ++ Y L
Sbjct: 499 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 147/367 (40%), Gaps = 41/367 (11%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205
TY ++ L + Q A + +M++ G P+ +LL +C + I EA ++QM
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
Query: 206 KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG- 264
+ QPD T++TL+ + L + M + P+ VT V+ G K G
Sbjct: 162 VEM-GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 265 ------MFDQMER-------VLSGMLESATCK--------------------PDVWTMNT 291
+ ++ME+ V+ + + CK PDV+T ++
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280
Query: 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351
++S N G+ R I+P TFN LI A+ K+ + + + M +
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
Query: 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411
TYN++I F + F M ++ D T+ LING+ A KV+
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA---KKVV 397
Query: 412 SSVRL---ASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT 468
+ L S+ + N Y +I +A D + V+K+M P+ T++ +
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457
Query: 469 EAYAKEG 475
+ K G
Sbjct: 458 DGLCKNG 464
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 38/307 (12%)
Query: 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
+W A ++ + E+ P T+ L+ K G+ A K+F+EM++ I+P Y
Sbjct: 290 RWSDASRLLSDMLERKI-NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348
Query: 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMD 242
+L+ +C + +DEA M + +C PDV TY+TLI A + L++DM
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVS-KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMS 407
Query: 243 ERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302
R + NTVT ++ G+ +A D + V M+ P++ T NT+L G++
Sbjct: 408 RRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV-HPNIMTYNTLLDGLCKNGKL 466
Query: 303 DMMERWYEKFRNFGIDPETRTFNIL----------------------------------- 327
+ +E + ++P+ T+NI+
Sbjct: 467 EKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTM 526
Query: 328 IGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM 387
I + KK + ++ ++ M++ S TYN +I A GD ++M +
Sbjct: 527 ISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRF 586
Query: 388 KADTKTF 394
D T+
Sbjct: 587 AGDASTY 593
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 130/306 (42%), Gaps = 19/306 (6%)
Query: 191 RNSLI----DEAFVTLNQM-KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
RN+L+ DEA +M K+ P P + +S L+ A +F+L+ + + M+
Sbjct: 38 RNALLHLKLDEAVDLFGEMVKSRP--FPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILG 95
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
V+ N T NI++ + +L M++ P + T+N++L+ F + ++
Sbjct: 96 VSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGY-GPSIVTLNSLLNGFCHGNRISEA 154
Query: 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365
++ G P+T TF L+ + + +++E M TY VI
Sbjct: 155 VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214
Query: 366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ---I 422
G+ +M ++AD + +I+ + V ++ L +++ I
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK---YRHVDDALNLFTEMDNKGI 271
Query: 423 AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA 482
+V Y+++IS + R+ M E+ P+ TF+ + +A+AKEG
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK-----L 326
Query: 483 LEQEKL 488
+E EKL
Sbjct: 327 IEAEKL 332
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 171/369 (46%), Gaps = 17/369 (4%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY +L ++ KSGQ LA ++ +M E I+ Y+ ++ C++ +D AF
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
N+M+ + ++ TY+ LI +A R++ L +DM +R + PN VT ++++ +
Sbjct: 285 LFNEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 343
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + E + M+ PD T +++ F + +D + + + G DP
Sbjct: 344 VKEGKLREAEELHKEMIHRGI-APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 402
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT---SSTYNNVIEAFSDMGDAKHMEY 377
RTFNILI Y K +++ +E RK+ + TYN +I+ F ++G +
Sbjct: 403 IRTFNILINGYCKA---NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 459
Query: 378 TFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437
F++M + + + T+ L++G + G K + K ++ ++ YN +I
Sbjct: 460 LFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC 519
Query: 438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH 497
A + + ++ + K +P +T++IM K+G E E L +E GH
Sbjct: 520 NASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKG-----PLSEAELLFRKMEEDGH 574
Query: 498 ----WQQNI 502
W NI
Sbjct: 575 APDGWTYNI 583
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 140/326 (42%), Gaps = 4/326 (1%)
Query: 162 LARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL 221
LA ++++ G EP ++ L+ C + EA +++M + + +PD+ T +TL
Sbjct: 141 LAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPDLITINTL 199
Query: 222 IKA-CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA 280
+ C+ E + L M E PN VT VL K+G +L M E
Sbjct: 200 VNGLCLSGKEAEAM-LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM-EER 257
Query: 281 TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKM 340
K D + I+ G +D + + GI T+NILIG + +D
Sbjct: 258 NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDG 317
Query: 341 SSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING 400
+ ++ M K + T++ +I++F G + E ++M G+ DT T+ LI+G
Sbjct: 318 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 377
Query: 401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD 460
+ K V L N+ +N +I+ KA+ + + ++++M + D
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 437
Query: 461 SETFSIMTEAYAKEGMNDKVYALEQE 486
+ T++ + + + + G + L QE
Sbjct: 438 TVTYNTLIQGFCELGKLNVAKELFQE 463
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 2/265 (0%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P TY L+ K + A ++ + MV +G +P + L+ YC+ + ID+
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
+M +L D TY+TLI+ + + + + L+Q+M R V PN VT I+L G
Sbjct: 426 FRKM-SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLC 484
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET 321
G ++ + +E + + D+ N I+ N +VD + G+ P
Sbjct: 485 DNGESEKALEIFEK-IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGV 543
Query: 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
+T+NI+IG KK + + M + TYN +I A GDA E+
Sbjct: 544 KTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEE 603
Query: 382 MHAEGMKADTKTFCCLINGYANAGL 406
+ G D T +I+ ++ L
Sbjct: 604 LKRCGFSVDASTIKMVIDMLSDGRL 628
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 139/320 (43%), Gaps = 8/320 (2%)
Query: 163 ARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222
A +F +M+ PT ++ L +A + D QM+ L ++YT S +I
Sbjct: 72 AIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQME-LKGIAHNLYTLSIMI 130
Query: 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC 282
+ L + + + PNT+T + ++ G G + ++ M+E
Sbjct: 131 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH- 189
Query: 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS 342
KPD+ T+NT+++ G+ +K +G P T+ ++ K + +
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS---GQTAL 246
Query: 343 VMEYMRKLQ---FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399
ME +RK++ + Y+ +I+ G + F +M +G+ + T+ LI
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIG 306
Query: 400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459
G+ NAG + +R K +I NV ++ +I + +K L E E ++K M + P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 366
Query: 460 DSETFSIMTEAYAKEGMNDK 479
D+ T++ + + + KE DK
Sbjct: 367 DTITYTSLIDGFCKENHLDK 386
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 151/311 (48%), Gaps = 4/311 (1%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSG-QPELARKVFNEMVEEGIEPTPELYTA 184
+A+ VF +KE +P TY ++ GK G + + K F+EM G++P + +
Sbjct: 286 EAISVFNSMKEYGL-RPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNS 344
Query: 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
LLA R L + A ++M T + DV++Y+TL+ A + +L + M +
Sbjct: 345 LLAVCSRGGLWEAARNLFDEM-TNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVK 403
Query: 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
+ PN V+ + V+ G+ KAG FD+ + G + D + NT+LS++ G+ +
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRFDEALNLF-GEMRYLGIALDRVSYNTLLSIYTKVGRSEE 462
Query: 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
+ + GI + T+N L+G YGK+ YD++ V M++ TY+ +I+
Sbjct: 463 ALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLID 522
Query: 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424
+S G K F + + G++AD + LI+ GL +S + +K I+
Sbjct: 523 GYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISP 582
Query: 425 NVSFYNAVISA 435
NV YN++I A
Sbjct: 583 NVVTYNSIIDA 593
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 153/338 (45%), Gaps = 3/338 (0%)
Query: 150 LLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP 209
++ LG+ G+ +A+++F G T ++AL++AY R+ L +EA N MK
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY- 297
Query: 210 NCQPDVYTYSTLIKACV-DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268
+P++ TY+ +I AC M F+ + + +M V P+ +T N +L + G+++
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357
Query: 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI 328
+ M + + DV++ NT+L GQ+D+ + I P +++ +I
Sbjct: 358 ARNLFDEM-TNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVI 416
Query: 329 GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK 388
+ K +D+ ++ MR L +YN ++ ++ +G ++ +M + G+K
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476
Query: 389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV 448
D T+ L+ GY G + +V + + N+ Y+ +I K E +
Sbjct: 477 KDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI 536
Query: 449 YKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
++ K R D +S + +A K G+ +L E
Sbjct: 537 FREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 1/198 (0%)
Query: 290 NTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349
+ ++S G+V + +R +E G F+ LI AYG+ ++++ SV M++
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296
Query: 350 LQFPWTSSTYNNVIEAFSDMG-DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFH 408
TYN VI+A G + K + F++M G++ D TF L+ + GL+
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356
Query: 409 KVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT 468
+ + +I ++V YN ++ A K + + +M K P+ ++S +
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVI 416
Query: 469 EAYAKEGMNDKVYALEQE 486
+ +AK G D+ L E
Sbjct: 417 DGFAKAGRFDEALNLFGE 434
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 183/411 (44%), Gaps = 15/411 (3%)
Query: 81 IPGYRSKRTPIKNLKKKLERKAKAKAWV--NTVAETFSDHVLKKQWFQALQVFEMLKEQP 138
I GY K I N L+R + + V NT+ + D + QA++V + + ++
Sbjct: 179 ISGY-CKAGEINNALSVLDRMSVSPDVVTYNTILRSLCD---SGKLKQAMEVLDRMLQRD 234
Query: 139 FYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEA 198
Y P TY L+ + A K+ +EM + G P Y L+ C+ +DEA
Sbjct: 235 CY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Query: 199 FVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLG 258
LN M + CQP+V T++ ++++ R+ E L DM + +P+ VT NI++
Sbjct: 294 IKFLNDMPS-SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352
Query: 259 GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGID 318
+ G+ + +L M + C+P+ + N +L F + ++D + E+ + G
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHG-CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS---TYNNVIEAFSDMGDAKHM 375
P+ T+N ++ A K K+ +E + +L S TYN VI+ + G
Sbjct: 412 PDIVTYNTMLTALCKD---GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKA 468
Query: 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435
++M A+ +K DT T+ L+ G + G + I ++ I N +N+++
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528
Query: 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
K+ M + C+P+ +++I+ E A EGM + L E
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNE 579
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 7/267 (2%)
Query: 123 QWFQALQVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPEL 181
+W A ++ +ML++ + P T+ L+ L + G A + +M + G +P
Sbjct: 324 RWMDAEKLLADMLRKG--FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLS 381
Query: 182 YTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA-CVDAMRFELIETLYQD 240
Y LL +C+ +D A L +M + C PD+ TY+T++ A C D + +E L Q
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVS-RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ- 439
Query: 241 MDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300
+ + +P +T N V+ G KAG + ++L M + KPD T ++++ + +G
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM-RAKDLKPDTITYSSLVGGLSREG 498
Query: 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYN 360
+VD +++ +F GI P TFN ++ K R D+ + +M ++Y
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYT 558
Query: 361 NVIEAFSDMGDAKHMEYTFEQMHAEGM 387
+IE + G AK ++ +G+
Sbjct: 559 ILIEGLAYEGMAKEALELLNELCNKGL 585
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/329 (19%), Positives = 137/329 (41%), Gaps = 5/329 (1%)
Query: 158 GQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYT 217
G+ A K+ + G P Y +++ YC+ I+ A L++M PDV T
Sbjct: 151 GKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV----SPDVVT 206
Query: 218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277
Y+T++++ D+ + + + M +R P+ +T I++ + ++L M
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266
Query: 278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY 337
+ C PDV T N +++ +G++D ++ + G P T NI++ + +
Sbjct: 267 DRG-CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325
Query: 338 DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397
++ M + F + T+N +I G E+M G + ++ ++ L
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL 385
Query: 398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC 457
++G+ + I + ++ YN +++A K + + + ++ K C
Sbjct: 386 LHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445
Query: 458 RPDSETFSIMTEAYAKEGMNDKVYALEQE 486
P T++ + + AK G K L E
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDE 474
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 123/331 (37%), Gaps = 41/331 (12%)
Query: 191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT 250
R ++E F L M N PD+ +TLI+ + + + ++ P+
Sbjct: 114 RTGELEEGFKFLENMVYHGNV-PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDV 172
Query: 251 VTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD------- 303
+T N+++ GY KAG + VL M + PDV T NTIL + G++
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRM----SVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 304 -MMER---------------------------WYEKFRNFGIDPETRTFNILIGAYGKKR 335
M++R ++ R+ G P+ T+N+L+ K+
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288
Query: 336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFC 395
D+ + M T+N ++ + G E M +G TF
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348
Query: 396 CLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455
LIN GL + I + + N YN ++ K + +RM +
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408
Query: 456 HCRPDSETFSIMTEAYAKEG-MNDKVYALEQ 485
C PD T++ M A K+G + D V L Q
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 161/343 (46%), Gaps = 2/343 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G +LA + N+M IE ++ ++ + C+ +D+A
Sbjct: 222 QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 281
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M+T +P+V TYS+LI R+ L DM E+ + PN VT N ++ +
Sbjct: 282 LFKEMET-KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G F + E++ M++ + PD++T N++++ F ++D ++ +E + P+
Sbjct: 341 VKEGKFVEAEKLYDDMIKRSI-DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPD 399
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T+N LI + K + + + + M + TY +I+ GD + + F+
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 459
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
QM ++G+ D T+ L++G N G K + K +I ++ Y +I KA
Sbjct: 460 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 519
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ + ++ + K +P+ T++ M + + + YAL
Sbjct: 520 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 562
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 138/333 (41%), Gaps = 2/333 (0%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205
TY L+ + Q LA + +M++ G EP+ ++LL YC I +A ++QM
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 206 KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265
+ +PD T++TLI + L M +R PN VT +V+ G K G
Sbjct: 182 VEM-GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN 325
D +L+ M E+A + DV NTI+ VD +++ GI P T++
Sbjct: 241 TDLALNLLNKM-EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 299
Query: 326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE 385
LI + S ++ M + + T+N +I+AF G E ++ M
Sbjct: 300 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR 359
Query: 386 GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM 445
+ D T+ L+NG+ K +V YN +I K+ + +
Sbjct: 360 SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDG 419
Query: 446 ERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478
+++ M + D+ T++ + + +G D
Sbjct: 420 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 452
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/347 (20%), Positives = 136/347 (39%), Gaps = 39/347 (11%)
Query: 133 MLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192
M+K +P P + KLL + K + ++ + +M I Y L+ +CR
Sbjct: 76 MVKSRPL--PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRR 133
Query: 193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVT 252
S I A L +M L +P + T S+L+ R L M E P+T+T
Sbjct: 134 SQISLALALLGKMMKLGY-EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192
Query: 253 QNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKF 312
++ G + ++ M++ C+P++ T +++ +G D+ K
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRG-CQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 251
Query: 313 RNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDA 372
I+ + FN +I + K R D DA
Sbjct: 252 EAAKIEADVVIFNTIIDSLCKYRHVD--------------------------------DA 279
Query: 373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAV 432
++ F++M +G++ + T+ LI+ + G + + + +I N+ +NA+
Sbjct: 280 LNL---FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336
Query: 433 ISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
I A +K +E E++Y M ++ PD T++ + + DK
Sbjct: 337 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/258 (17%), Positives = 103/258 (39%), Gaps = 1/258 (0%)
Query: 218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277
Y +++ + M+ + L+ M + P+ V N +L K FD + L +
Sbjct: 53 YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVIS-LGEKM 111
Query: 278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY 337
+ ++T N +++ F + Q+ + K G +P T + L+ Y +
Sbjct: 112 QRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171
Query: 338 DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397
++++ M ++ + + T+ +I A ++M G + + T+ +
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231
Query: 398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC 457
+NG G ++ + +I +V +N +I + K + + ++K M+ K
Sbjct: 232 VNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGI 291
Query: 458 RPDSETFSIMTEAYAKEG 475
RP+ T+S + G
Sbjct: 292 RPNVVTYSSLISCLCSYG 309
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 179/380 (47%), Gaps = 39/380 (10%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
+QP E TY +L ++ KSGQ LA ++ +M E I+ Y+ ++ C++ +D AF
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAF 283
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
N+M+ + + D+ TY+TLI +A R++ L +DM +R ++PN VT ++++
Sbjct: 284 NLFNEME-IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDS 342
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
+ K G + +++L M++ P+ T N+++ F + +++ + + + G DP
Sbjct: 343 FVKEGKLREADQLLKEMMQRGI-APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDP 401
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
+ TFNILI Y K D + M + TYN +++ F G + + F
Sbjct: 402 DIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLF 461
Query: 380 EQMHAEGMKADTKTFCCLINGYAN----------------------AGLFHKVISSVRLA 417
++M + ++ D ++ L++G + G++ +I + A
Sbjct: 462 QEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNA 521
Query: 418 SKLQ-------------IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF 464
SK+ + + YN +IS + D L + + ++++M E+ PD T+
Sbjct: 522 SKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTY 581
Query: 465 SIMTEAYAKEGMNDKVYALE 484
+I+ A+ G +D A E
Sbjct: 582 NILIRAHL--GDDDATTAAE 599
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 151/339 (44%), Gaps = 8/339 (2%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y+P + LL L + A ++ + MVE G +PT L+ C N + +A
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAV 213
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
V +++M QP+ TY ++ + + L L + M+ER++ + V +I++ G
Sbjct: 214 VLIDRMVE-TGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
K G D + + M E K D+ T NT++ F N G+ D + I P
Sbjct: 273 LCKDGSLDNAFNLFNEM-EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP 331
Query: 320 ETRTFNILIGAY---GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHME 376
TF++LI ++ GK R D++ + E M++ P T TYN++I+ F +
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQL--LKEMMQRGIAPNTI-TYNSLIDGFCKENRLEEAI 388
Query: 377 YTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436
+ M ++G D TF LINGY A + R S + N YN ++
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448
Query: 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
++ L +++++ M + RPD ++ I+ + G
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNG 487
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 149/363 (41%), Gaps = 7/363 (1%)
Query: 126 QALQVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA 184
A+ +F +M++ +P P + +L + K+ Q EL + +M +GI + +
Sbjct: 71 DAVDLFRDMIQSRPL--PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSI 128
Query: 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA-CVDAMRFELIETLYQDMDE 243
++ +CR + AF T+ ++ L +PD ++TL+ C++ E +E L M E
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGY-EPDTVIFNTLLNGLCLECRVSEALE-LVDRMVE 186
Query: 244 RSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD 303
P +T N ++ G G ++ M+E+ +P+ T +L+V GQ
Sbjct: 187 MGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGF-QPNEVTYGPVLNVMCKSGQTA 245
Query: 304 MMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI 363
+ K I + ++I+I K D ++ M F TYN +I
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305
Query: 364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIA 423
F + G M + + TF LI+ + G + ++ + IA
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365
Query: 424 ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
N YN++I K + L E ++ M K C PD TF+I+ Y K D L
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425
Query: 484 EQE 486
+E
Sbjct: 426 FRE 428
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 11/295 (3%)
Query: 132 EMLKE--QPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189
++LKE Q P TY L+ K + E A ++ + M+ +G +P + L+ Y
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413
Query: 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN 249
C+ + ID+ +M +L + TY+TL++ + + E+ + L+Q+M R V P+
Sbjct: 414 CKANRIDDGLELFREM-SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Query: 250 TVTQNIVLGGYGKAGMFDQMERVLS--GMLESATCKPDVWTMNTILSVFANKGQVDMMER 307
V+ I+L G G ++E+ L G +E + + D+ I+ N +VD
Sbjct: 473 IVSYKILLDGLCDNG---ELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWD 529
Query: 308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS 367
+ G+ + R +NI+I +K K + M + TYN +I A
Sbjct: 530 LFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHL 589
Query: 368 DMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL---FHKVISSVRLASK 419
DA E+M + G AD T +IN ++ L F ++S+ R + K
Sbjct: 590 GDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLSTTRASLK 644
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 161/343 (46%), Gaps = 2/343 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G +LA + N+M IE ++ ++ + C+ +D+A
Sbjct: 147 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALN 206
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M+T +P+V TYS+LI R+ L DM E+ + PN VT N ++ +
Sbjct: 207 LFKEMET-KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G F + E++ M++ + PD++T N++++ F ++D ++ +E + P+
Sbjct: 266 VKEGKFVEAEKLHDDMIKRSI-DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPD 324
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T+N LI + K + + + + M + TY +I+ GD + + F+
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
QM ++G+ D T+ L++G N G K + K +I ++ Y +I KA
Sbjct: 385 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ + ++ + K +P+ T++ M + + + YAL
Sbjct: 445 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 487
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 137/333 (41%), Gaps = 2/333 (0%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205
TY L+ + Q LA + +M++ G EP+ ++LL YC I +A ++QM
Sbjct: 47 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 106
Query: 206 KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265
+ +PD T++TLI + L M +R PN VT +V+ G K G
Sbjct: 107 VEM-GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 165
Query: 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN 325
D +L+ M E+A + DV NTI+ VD +++ GI P T++
Sbjct: 166 IDLAFNLLNKM-EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 224
Query: 326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE 385
LI + S ++ M + + T+N +I+AF G E + M
Sbjct: 225 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR 284
Query: 386 GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM 445
+ D T+ LING+ K ++ YN +I K+ + +
Sbjct: 285 SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDG 344
Query: 446 ERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478
+++ M + D+ T++ + + +G D
Sbjct: 345 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 377
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/424 (22%), Positives = 173/424 (40%), Gaps = 45/424 (10%)
Query: 57 SESAVAAKKRLWKEGEYPG-VSETSIPGYRSKRTPIK---NLKKKLERKAKAKAWVNTVA 112
+ AVA R+ + G P V+ + KR I NL K+E AK +A V +
Sbjct: 131 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME-AAKIEADV-VIF 188
Query: 113 ETFSDHVLK-KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMV 171
T D + K + AL +F+ ++ + +P TY L+ L G+ A ++ ++M+
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGI-RPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 172 EEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF 231
E+ I P + AL+ A+ + EA + M + PD++TY++LI R
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIK-RSIDPDIFTYNSLINGFCMHDRL 306
Query: 232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT 291
+ + +++ M + P+ T N ++ G+ K+ + + M D T T
Sbjct: 307 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV-GDTVTYTT 365
Query: 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351
++ + G D ++ +++ + G+ P+ T++IL+ +K V +YM+K +
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425
Query: 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411
Y +IE G F + +G+K
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP---------------------- 463
Query: 412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471
NV YN +IS L E + K+MKE PDS T++ + A+
Sbjct: 464 -------------NVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Query: 472 AKEG 475
++G
Sbjct: 511 LRDG 514
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 140/341 (41%), Gaps = 4/341 (1%)
Query: 133 MLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192
M+K +P P + KLL + K + +L + +M GI Y L+ +CR
Sbjct: 1 MVKSRPL--PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRR 58
Query: 193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVT 252
S I A L +M L +P + T S+L+ R L M E P+T+T
Sbjct: 59 SQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 117
Query: 253 QNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKF 312
++ G + ++ M++ C+P++ T +++ +G +D+ K
Sbjct: 118 FTTLIHGLFLHNKASEAVALVDRMVQRG-CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176
Query: 313 RNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDA 372
I+ + FN +I + K R D ++ + M TY+++I G
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236
Query: 373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAV 432
M + + + TF LI+ + G F + K I ++ YN++
Sbjct: 237 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296
Query: 433 ISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473
I+ D L + +++++ M K C PD +T++ + + + K
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 337
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/191 (17%), Positives = 78/191 (40%)
Query: 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM 344
+++T N +++ F + Q+ + K G +P T + L+ Y + +++
Sbjct: 44 NLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 103
Query: 345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA 404
+ M ++ + + T+ +I A ++M G + + T+ ++NG
Sbjct: 104 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 163
Query: 405 GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF 464
G + + +I +V +N +I + K + + ++K M+ K RP+ T+
Sbjct: 164 GDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 223
Query: 465 SIMTEAYAKEG 475
S + G
Sbjct: 224 SSLISCLCSYG 234
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 64/165 (38%)
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
P FN L+ A K + +D + S+ E M++L TYN +I F
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
+M G + T L+NGY + ++ V ++ + + +I
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ E + RM ++ C+P+ T+ ++ K G D + L
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 172
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 172/374 (45%), Gaps = 12/374 (3%)
Query: 119 VLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT 178
V ++ W +AL+VFE L + ++ P +L +LG+ Q LA ++F E +
Sbjct: 166 VGQESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTR-AEPTVGDR 224
Query: 179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA--MRFELIET 236
++Y A++ Y R+ +A ++ M+ C PD+ +++TLI A + + + L
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQ-RGCVPDLISFNTLINARLKSGGLTPNLAVE 283
Query: 237 LYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVF 296
L + + P+ +T N +L + D +V M E+ C+PD+WT N ++SV+
Sbjct: 284 LLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM-EAHRCQPDLWTYNAMISVY 342
Query: 297 ANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS 356
G ER + + G P+ T+N L+ A+ ++R +K+ V + M+K+ F
Sbjct: 343 GRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDE 402
Query: 357 STYNNVIEAFSDMGDAKHMEYTFEQMHA-EGMKADTKTFCCLINGYANAGLFHKVISSVR 415
TYN +I + G ++ M G D T+ LI+ A ++ + +
Sbjct: 403 MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKA---NRTVEAAA 459
Query: 416 LASKL---QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472
L S++ I + Y+A+I KA E E + M +PD+ +S+M +
Sbjct: 460 LMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519
Query: 473 KEGMNDKVYALEQE 486
+ K + L ++
Sbjct: 520 RGNETRKAWGLYRD 533
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/353 (20%), Positives = 155/353 (43%), Gaps = 3/353 (0%)
Query: 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPE 180
+K W +A V L+ Q P T+ L+ + G E AR +FN M+ +G PT E
Sbjct: 765 QKLWQKAESVVGNLR-QSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVE 823
Query: 181 LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQD 240
LL A C + ++E +V + +++ + + + ++ A A ++ +Y
Sbjct: 824 SINILLHALCVDGRLEELYVVVEELQDM-GFKISKSSILLMLDAFARAGNIFEVKKIYSS 882
Query: 241 MDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300
M P +++ K E ++S M E A K ++ N++L ++
Sbjct: 883 MKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEM-EEANFKVELAIWNSMLKMYTAIE 941
Query: 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYN 360
+ Y++ + G++P+ T+N LI Y + R ++ +M+ MR L TY
Sbjct: 942 DYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYK 1001
Query: 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420
++I AF + E FE++ ++G+K D + ++ ++G K +++
Sbjct: 1002 SLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA 1061
Query: 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473
I ++ + ++ + + + E E+V +K+ + +S + +AY +
Sbjct: 1062 GIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLR 1114
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/330 (19%), Positives = 138/330 (41%), Gaps = 48/330 (14%)
Query: 163 ARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP---NCQPDVYTYS 219
A +VF+++ G E + + +++ YC+ + A +NQ +T C P
Sbjct: 700 ASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP------ 753
Query: 220 TLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES 279
+Y D+ E YGK ++ + E V+ + +S
Sbjct: 754 -----------------MYTDIIE---------------AYGKQKLWQKAESVVGNLRQS 781
Query: 280 ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDK 339
PD+ T N+++S +A G + + G P + NIL+ A ++
Sbjct: 782 GR-TPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEE 840
Query: 340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399
+ V+E ++ + F + S+ +++AF+ G+ ++ + M A G + + +I
Sbjct: 841 LYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIE 900
Query: 400 GYANAGLFHKVISSVRLASKLQIAE---NVSFYNAVISACIKADDLMEMERVYKRMKEKH 456
+V + + S+++ A ++ +N+++ +D + +VY+R+KE
Sbjct: 901 LLCKG---KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957
Query: 457 CRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
PD T++ + Y ++ ++ Y L Q+
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEEGYLLMQQ 987
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 6/223 (2%)
Query: 127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
ALQ+++ +K P TY L+ LGK+ + A + +EM++ GI+PT + Y+AL+
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALI 480
Query: 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV 246
Y + +EA T + M +PD YS ++ + LY+DM
Sbjct: 481 CGYAKAGKREEAEDTFSCM-LRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGH 539
Query: 247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME 306
TP+ +++ G K D +++ + M E P I SV D+
Sbjct: 540 TPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNP-----LEISSVLVKGECFDLAA 594
Query: 307 RWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349
R + G + E T ++G+Y + + ++E++++
Sbjct: 595 RQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKE 637
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 37/212 (17%)
Query: 281 TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKM 340
T V N ++ V++ G+ + + R G P+ +FN LI A K
Sbjct: 220 TVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPN 279
Query: 341 SSV--MEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI 398
+V ++ +R + TYN ++ A S + FE M A + D T+ +I
Sbjct: 280 LAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMI 339
Query: 399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR 458
+ Y GL E ER++ ++ K
Sbjct: 340 SVYGRCGL-----------------------------------AAEAERLFMELELKGFF 364
Query: 459 PDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490
PD+ T++ + A+A+E +KV + Q+ +M
Sbjct: 365 PDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 68/373 (18%), Positives = 135/373 (36%), Gaps = 44/373 (11%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
+P Y +L +L + + A ++ +M+ +G P+ LY ++ + + D+
Sbjct: 505 KPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQK 564
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKA-CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
T+ M+ L P + S L+K C D +L + + + T ++ LG
Sbjct: 565 TIRDMEELCGMNP-LEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSI-----LGS 618
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTI-LSVFANKGQVDMMERWYEKFRNFGID 318
Y +G + +L + E A+ + T I L N + E + + +
Sbjct: 619 YSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCF 678
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMR-------------------KLQFPWT---- 355
+ + L+ Y + S V +R KL FP T
Sbjct: 679 GSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQV 738
Query: 356 -------------SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402
S Y ++IEA+ + E + G D KT+ L++ YA
Sbjct: 739 VNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYA 798
Query: 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE 462
G + + + + + V N ++ A L E+ V + +++ +
Sbjct: 799 QCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKS 858
Query: 463 TFSIMTEAYAKEG 475
+ +M +A+A+ G
Sbjct: 859 SILLMLDAFARAG 871
Score = 36.2 bits (82), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+A ++ +M+K +P T L+V SG P+ A KV + + + +E T Y+++
Sbjct: 1050 KAEKLLQMMKNAGI-EPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSV 1108
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA 224
+ AY R+ + L +MK +PD ++ ++A
Sbjct: 1109 IDAYLRSKDYNSGIERLLEMKK-EGLEPDHRIWTCFVRA 1146
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 177/354 (50%), Gaps = 5/354 (1%)
Query: 122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ-PELARKVFNEMVEEGIEPTPE 180
+++ A +V+E + + Y P T L+ L K+G+ + ++F +M E+G++ + +
Sbjct: 287 QRYDDAWEVYEAMDKINVY-PDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQD 345
Query: 181 LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQD 240
++ L+ ++C L +EA V +M+ + + Y+TL+ A + E +E L+ +
Sbjct: 346 VFGGLVKSFCDEGLKEEALVIQTEMEK-KGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTE 404
Query: 241 MDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFA-NK 299
M ++ + P+ T NI++ Y + D +E +L M E +P+V + ++S + K
Sbjct: 405 MRDKGLKPSAATYNILMDAYARRMQPDIVETLLREM-EDLGLEPNVKSYTCLISAYGRTK 463
Query: 300 GQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY 359
DM + + + G+ P + ++ LI AY ++K + E M K + TY
Sbjct: 464 KMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETY 523
Query: 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK 419
+V++AF GD + ++ M E +K T+ L++G+A GL+ + V SK
Sbjct: 524 TSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSK 583
Query: 420 LQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473
+ + +V YN +++A + ++ ++ K M + +PDS T+S M A+ +
Sbjct: 584 MGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVR 637
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/365 (21%), Positives = 158/365 (43%), Gaps = 42/365 (11%)
Query: 151 LVLLGKSGQPELARKVFNEM-VEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP 209
LV++G+SG + + M ++E +P + L R + D + L+ LP
Sbjct: 209 LVMMGESGFVKSCLYFYEWMSLQEPSLASPRACSVLFTLLGRERMADYILLLLSN---LP 265
Query: 210 NCQP--DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG--- 264
+ + DV Y+ I + R++ +Y+ MD+ +V P+ VT I++ KAG
Sbjct: 266 DKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSA 325
Query: 265 -----MFDQM--------ERVLSGM-------------------LESATCKPDVWTMNTI 292
+F++M + V G+ +E + + NT+
Sbjct: 326 KEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTL 385
Query: 293 LSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQF 352
+ + ++ +E + + R+ G+ P T+NIL+ AY ++ D + +++ M L
Sbjct: 386 MDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGL 445
Query: 353 PWTSSTYNNVIEAFSDMGDAKHMEY-TFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411
+Y +I A+ M F +M G+K + ++ LI+ Y+ +G K
Sbjct: 446 EPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAY 505
Query: 412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471
+S K I +V Y +V+ A ++ D ++ ++K M + + T++ + + +
Sbjct: 506 ASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGF 565
Query: 472 AKEGM 476
AK+G+
Sbjct: 566 AKQGL 570
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 3/255 (1%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS-LIDEAF 199
+P TY L+ + QP++ + EM + G+EP + YT L++AY R + D A
Sbjct: 411 KPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAA 470
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
+MK + +P ++Y+ LI A + E +++M + + P+ T VL
Sbjct: 471 DAFLRMKKV-GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDA 529
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
+ ++G ++ + ML K T NT+L FA +G +F G+ P
Sbjct: 530 FRRSGDTGKLMEIWKLMLREK-IKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQP 588
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
T+N+L+ AY + K+ +++ M L S TY+ +I AF + D K +
Sbjct: 589 SVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYH 648
Query: 380 EQMHAEGMKADTKTF 394
+ M G D +++
Sbjct: 649 KMMVKSGQVPDPRSY 663
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 7/185 (3%)
Query: 310 EKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369
E+FR+ R +N I + YD V E M K+ + T +I
Sbjct: 268 EEFRD------VRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKA 321
Query: 370 G-DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF 428
G AK + FE+M +G+K F L+ + + GL + + K I N
Sbjct: 322 GRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIV 381
Query: 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL 488
YN ++ A K++ + E+E ++ M++K +P + T++I+ +AYA+ D V L +E
Sbjct: 382 YNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREME 441
Query: 489 QMLLE 493
+ LE
Sbjct: 442 DLGLE 446
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 163/346 (47%), Gaps = 2/346 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G +LA + +M + IEP +Y ++ A C +++A
Sbjct: 218 QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALN 277
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M +P+V TY++LI+ + R+ L DM ER + PN VT + ++ +
Sbjct: 278 LFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 336
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + E++ M++ + PD++T +++++ F ++D + +E + P
Sbjct: 337 VKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 395
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T+N LI + K + D+ + M + + TY +I F + + + F+
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFK 455
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
QM ++G+ D T+ L++G N G + + ++ ++ YN +I KA
Sbjct: 456 QMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAG 515
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
+ + ++ + K +P+ T++ M + ++G+ ++ AL +E
Sbjct: 516 KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 146/341 (42%), Gaps = 12/341 (3%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205
TY L+ + Q LA V +M++ G EP +LL +C + I +A + QM
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177
Query: 206 KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265
+ QPD +T++TLI R L M + P+ VT IV+ G K G
Sbjct: 178 VEM-GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236
Query: 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN 325
D +L M E +P V NTI+ N V+ + + N GI P T+N
Sbjct: 237 IDLALSLLKKM-EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 295
Query: 326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE 385
LI + S ++ M + + T++ +I+AF G E +++M
Sbjct: 296 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 355
Query: 386 GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE----NVSFYNAVISACIKADD 441
+ D T+ LING+ H + + +L I++ NV YN +I KA
Sbjct: 356 SIDPDIFTYSSLINGFC----MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411
Query: 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAY--AKEGMNDKV 480
+ E +++ M ++ ++ T++ + + A+E N ++
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI 452
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 7/245 (2%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+A +FE++ + + P TY L+ K+ + + ++F EM + G+ YT L
Sbjct: 379 EAKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
+ + + D A + QM + PD+ TYS L+ + + E +++ +
Sbjct: 438 IHGFFQARECDNAQIVFKQMVS-DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK 496
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
+ P+ T NI++ G KAG + + L KP+V T T++S F KG +
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCS-LSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555
Query: 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS--VMEYMRKLQFPWTSSTYNNVI 363
+ + + + G P++ T+N LI A+ R DK +S ++ MR +F +ST V
Sbjct: 556 DALFREMKEEGPLPDSGTYNTLIRAH--LRDGDKAASAELIREMRSCRFVGDASTIGLVT 613
Query: 364 EAFSD 368
D
Sbjct: 614 NMLHD 618
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 9/267 (3%)
Query: 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272
P + +S L+ A +F+L+ +L + M ++ N T +I++ + + V
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI-GAY 331
L+ M++ +PD+ T+N++L+ F + ++ + G P++ TFN LI G +
Sbjct: 139 LAKMMKLGY-EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197
Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
R + ++ V + K P TY V+ GD ++M ++
Sbjct: 198 RHNRASEAVALVDRMVVKGCQP-DLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGV 256
Query: 392 KTFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACIKADDLMEMERV 448
+ +I+ N + V ++ L +++ I NV YN++I + R+
Sbjct: 257 VIYNTIIDALCN---YKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 449 YKRMKEKHCRPDSETFSIMTEAYAKEG 475
M E+ P+ TFS + +A+ KEG
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEG 340
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 106/260 (40%), Gaps = 1/260 (0%)
Query: 216 YTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG 275
Y Y + ++ ++ + L+ DM + P+ V + +L K FD + L
Sbjct: 47 YDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVIS-LGE 105
Query: 276 MLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKR 335
+++ +++T + +++ F + Q+ + K G +P+ T N L+ +
Sbjct: 106 QMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGN 165
Query: 336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFC 395
S++ M ++ + S T+N +I A ++M +G + D T+
Sbjct: 166 RISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG 225
Query: 396 CLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455
++NG G +S ++ + +I V YN +I A ++ + ++ M K
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Query: 456 HCRPDSETFSIMTEAYAKEG 475
RP+ T++ + G
Sbjct: 286 GIRPNVVTYNSLIRCLCNYG 305
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
P F+ L+ A K +D + S+ E M+ L TY+ +I F
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
+M G + D T L+NG+ + +S V ++ + +N +I +
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL----EQEKLQ 489
+ E + RM K C+PD T+ I+ K G D +L EQ K++
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 154/338 (45%), Gaps = 7/338 (2%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G+P+LA + N+M + IE +Y ++ C+ +D+AF
Sbjct: 212 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFD 271
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
N+M+T +PDV+TY+ LI + R+ L DM E+++ P+ V N ++ +
Sbjct: 272 LFNKMET-KGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAF 330
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + E++ M++S C PDV NT++ F +V+ + + G+
Sbjct: 331 VKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T T+ LI + + R D V + M TYN +++ + G+ + FE
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFE 450
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACI 437
M MK D T+ +I AG KV L L + NV Y ++S
Sbjct: 451 YMQKRDMKLDIVTYTTMIEALCKAG---KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 507
Query: 438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ E + ++ MKE P+S T++ + A ++G
Sbjct: 508 RKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDG 545
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 152/348 (43%), Gaps = 3/348 (0%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
YQP T+ L+ L + + A + MV +G +P Y A++ C+ D A
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
LN+M+ + DV Y+T+I + L+ M+ + + P+ T N ++
Sbjct: 236 NLLNKMEK-GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY-EKFRNFGID 318
G + R+LS MLE PD+ N ++ F +G++ E+ Y E ++
Sbjct: 295 LCNYGRWSDASRLLSDMLEK-NINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
P+ +N LI + K + ++ V M + + TY +I F D + +
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
F+QM ++G+ D T+ L++G N G + K + ++ Y +I A K
Sbjct: 414 FKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
A + + ++ + K +P+ T++ M + ++G+ ++ AL E
Sbjct: 474 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVE 521
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 171/417 (41%), Gaps = 44/417 (10%)
Query: 57 SESAVAAKKRLWKEGEYPGVSE--TSIPGYRSKRTP--IKNLKKKLERKAKAKAWVNTVA 112
+ AVA +R+ +G P + I G + P NL K+E K K +A V +
Sbjct: 196 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME-KGKIEADV-VIY 253
Query: 113 ETFSDHVLK-KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMV 171
T D + K K A +F ++ + +P TY L+ L G+ A ++ ++M+
Sbjct: 254 NTIIDGLCKYKHMDDAFDLFNKMETKGI-KPDVFTYNPLISCLCNYGRWSDASRLLSDML 312
Query: 172 EEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF 231
E+ I P + AL+ A+ + + EA ++M +C PDV Y+TLIK R
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372
Query: 232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT 291
E ++++M +R + NTVT ++ G+ +A D + V M+ PD+ T N
Sbjct: 373 EEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV-HPDIMTYNI 431
Query: 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351
+L N G V ET V EYM+K
Sbjct: 432 LLDGLCNNGNV-----------------ETALV------------------VFEYMQKRD 456
Query: 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411
TY +IEA G + F + +G+K + T+ +++G+ GL +
Sbjct: 457 MKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEAD 516
Query: 412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT 468
+ + N YN +I A ++ D + K M+ D+ TF ++T
Sbjct: 517 ALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVT 573
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/239 (18%), Positives = 97/239 (40%), Gaps = 1/239 (0%)
Query: 237 LYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVF 296
L+ DM + P+ V + +L K FD + L +++ +++T + ++ F
Sbjct: 62 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVIS-LGEQMQNLGISHNLYTYSIFINYF 120
Query: 297 ANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS 356
+ Q+ + K G P T N L+ + + ++++ M ++ + +
Sbjct: 121 CRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 180
Query: 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRL 416
T+ ++ A E+M +G + D T+ +ING G ++ +
Sbjct: 181 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 240
Query: 417 ASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
K +I +V YN +I K + + ++ +M+ K +PD T++ + G
Sbjct: 241 MEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYG 299
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 35/195 (17%)
Query: 284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV 343
P + + +LS A + D++ E+ +N GI T++I I + ++ ++
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 344 MEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403
+ M KL + + T N+++ F +QM G + DT TF L++G
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG--- 189
Query: 404 AGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET 463
LF +S +A + +RM K C+PD T
Sbjct: 190 --LFQHNKASEAVA------------------------------LVERMVVKGCQPDLVT 217
Query: 464 FSIMTEAYAKEGMND 478
+ + K G D
Sbjct: 218 YGAVINGLCKRGEPD 232
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 159/343 (46%), Gaps = 2/343 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G +LA + N+M IE +Y+ ++ + C+ D+A
Sbjct: 222 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALN 281
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M+ +P+V TYS+LI + R+ L DM ER + PN VT N ++ +
Sbjct: 282 LFTEMEN-KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + E++ M++ + PD++T +++++ F ++D + +E + P
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 399
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T+N LI + K + D+ + M + + TY +I F D + + F+
Sbjct: 400 VVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 459
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
QM ++G+ + T+ L++G G K + + ++ + YN +I KA
Sbjct: 460 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 519
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ + ++ + K +PD ++ M + ++G+ ++ AL
Sbjct: 520 KVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADAL 562
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 151/373 (40%), Gaps = 53/373 (14%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205
TY L+ + Q LA + +M++ G EP+ ++LL YC I +A ++QM
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 206 KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265
+ +PD T++TLI + L M +R PN VT +V+ G K G
Sbjct: 182 VEM-GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 266 FDQMERVLSGM----------------------------------LESATCKPDVWTMNT 291
D +L+ M +E+ +P+V T ++
Sbjct: 241 IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300
Query: 292 ILSVFANKGQVDMMERWYEKFRNFG------IDPETRTFNILIGAYGKKRMYDKMSSVME 345
++S N ERW + R I+P TFN LI A+ K+ + + +
Sbjct: 301 LISCLCN------YERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354
Query: 346 YMRKLQFPWTSSTYNNVIEAF---SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402
M K TY+++I F + +AKHM FE M ++ + T+ LING+
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM---FELMISKDCFPNVVTYNTLINGFC 411
Query: 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE 462
A + + R S+ + N Y +I +A D + V+K+M P+
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 463 TFSIMTEAYAKEG 475
T++ + + K G
Sbjct: 472 TYNTLLDGLCKNG 484
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 73/313 (23%)
Query: 80 SIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPF 139
S+ YR + + NL ++E K + V T + S ++W A ++ + E+
Sbjct: 269 SLCKYRHEDDAL-NLFTEMENKG-VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKI 326
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
P T+ L+ K G+ A K+++EM++ I+P Y++L+ +C + +DEA
Sbjct: 327 -NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 385
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS-------------- 245
M + +C P+V TY+TLI A R + L+++M +R
Sbjct: 386 HMFELMIS-KDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444
Query: 246 ---------------------VTPNTVTQNIVLGGYGKAG-------MFDQMER------ 271
V PN +T N +L G K G +F+ ++R
Sbjct: 445 FFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT 504
Query: 272 ------VLSGMLESA---------------TCKPDVWTMNTILSVFANKGQVDMMERWYE 310
++ GM ++ KPDV NT++S F KG + + +
Sbjct: 505 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFR 564
Query: 311 KFRNFGIDPETRT 323
K R G P++ T
Sbjct: 565 KMREDGPLPDSGT 577
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 127/293 (43%), Gaps = 14/293 (4%)
Query: 191 RNSL----IDEAFVTLNQM-KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
RN L +D+A M K+ P P ++ ++ L+ A +F+L+ +L + M
Sbjct: 58 RNGLHSMKLDDAIGLFGGMVKSRP--LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLG 115
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
++ N T NI++ + + +L M++ +P + T++++L+ + + ++
Sbjct: 116 ISHNLYTYNILINCFCRRSQISLALALLGKMMKLGY-EPSIVTLSSLLNGYCHGKRISDA 174
Query: 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365
++ G P+T TF LI + ++++ M + TY V+
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234
Query: 366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ---I 422
GD +M A ++A+ + +I+ + ++ L ++++ +
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCK---YRHEDDALNLFTEMENKGV 291
Query: 423 AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
NV Y+++IS + + R+ M E+ P+ TF+ + +A+ KEG
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEG 344
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/248 (17%), Positives = 99/248 (39%), Gaps = 1/248 (0%)
Query: 218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277
Y +++ + +M+ + L+ M + P+ N +L K FD + L +
Sbjct: 53 YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVIS-LGEKM 111
Query: 278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY 337
+ +++T N +++ F + Q+ + K G +P T + L+ Y +
Sbjct: 112 QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171
Query: 338 DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397
++++ M ++ + + T+ +I A ++M G + + T+ +
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231
Query: 398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC 457
+NG G + + +I NV Y+ VI + K + ++ M+ K
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGV 291
Query: 458 RPDSETFS 465
RP+ T+S
Sbjct: 292 RPNVITYS 299
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 64/165 (38%)
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
P FN L+ A K + +D + S+ E M++L TYN +I F
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
+M G + T L+NGY + ++ V ++ + + +I
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ E + RM ++ C+P+ T+ ++ K G D + L
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 247
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 177/425 (41%), Gaps = 21/425 (4%)
Query: 67 LWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQ 126
L K G+Y E RS +P + L +A K V + FSD +
Sbjct: 315 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSD-------MR 367
Query: 127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
+ V P + ++ L +SG + A FN + E G+ P +YT L+
Sbjct: 368 SRDVV----------PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILI 417
Query: 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV 246
YCR +I A N+M C DV TY+T++ + L+ +M ER++
Sbjct: 418 QGYCRKGMISVAMNLRNEMLQ-QGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERAL 476
Query: 247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME 306
P++ T I++ G+ K G + M E + DV T NT+L F G +D +
Sbjct: 477 FPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRI-RLDVVTYNTLLDGFGKVGDIDTAK 535
Query: 307 RWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF 366
+ + I P +++IL+ A K + V + M T N++I+ +
Sbjct: 536 EIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGY 595
Query: 367 SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ--IAE 424
G+A E E+M +EG D ++ LI G+ K V+ + Q +
Sbjct: 596 CRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVP 655
Query: 425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALE 484
+V YN+++ + + + E E V ++M E+ PD T++ M + + + + +
Sbjct: 656 DVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIH 715
Query: 485 QEKLQ 489
E LQ
Sbjct: 716 DEMLQ 720
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 141/322 (43%), Gaps = 2/322 (0%)
Query: 154 LGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP 213
L K G+ E +++ E+G+ P Y L++AY L++EAF +N M P
Sbjct: 245 LCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG-KGFSP 303
Query: 214 DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL 273
VYTY+T+I ++E + ++ +M ++P++ T +L K G + E+V
Sbjct: 304 GVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVF 363
Query: 274 SGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK 333
S M S PD+ ++++S+F G +D ++ + G+ P+ + ILI Y +
Sbjct: 364 SDM-RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCR 422
Query: 334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT 393
K M ++ M + TYN ++ + F +M + D+ T
Sbjct: 423 KGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYT 482
Query: 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453
LI+G+ G + + + +I +V YN ++ K D+ + ++ M
Sbjct: 483 LTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV 542
Query: 454 EKHCRPDSETFSIMTEAYAKEG 475
K P ++SI+ A +G
Sbjct: 543 SKEILPTPISYSILVNALCSKG 564
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 152/357 (42%), Gaps = 4/357 (1%)
Query: 129 QVFEMLKEQPF--YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
+ FE++ P + P TY ++ L K G+ E A++VF EM+ G+ P Y +LL
Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 347
Query: 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV 246
C+ + E + M++ + PD+ +S+++ + + + + E +
Sbjct: 348 MEACKKGDVVETEKVFSDMRS-RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGL 406
Query: 247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME 306
P+ V I++ GY + GM + + ML+ C DV T NTIL + + +
Sbjct: 407 IPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG-CAMDVVTYNTILHGLCKRKMLGEAD 465
Query: 307 RWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF 366
+ + + + P++ T ILI + K + + M++ + TYN +++ F
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGF 525
Query: 367 SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV 426
+GD + + M ++ + ++ L+N + G + I V
Sbjct: 526 GKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTV 585
Query: 427 SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
N++I ++ + + E ++M + PD +++ + + +E K + L
Sbjct: 586 MICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGL 642
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 115/295 (38%), Gaps = 42/295 (14%)
Query: 219 STLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE 278
+ LI + V EL +YQ++ V N T NI++ K G +++ LS + E
Sbjct: 204 NALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE 263
Query: 279 SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF---GIDPETRTFNILIGAYGKKR 335
PD+ T NT++S +++KG +ME +E G P T+N +I K
Sbjct: 264 KGV-YPDIVTYNTLISAYSSKG---LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHG 319
Query: 336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE---------- 385
Y++ V M + S+TY +++ GD E F M +
Sbjct: 320 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFS 379
Query: 386 -------------------------GMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420
G+ D + LI GY G+ ++ +
Sbjct: 380 SMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ 439
Query: 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
A +V YN ++ K L E ++++ M E+ PDS T +I+ + + K G
Sbjct: 440 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLG 494
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/407 (22%), Positives = 178/407 (43%), Gaps = 39/407 (9%)
Query: 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP 179
L K+W + V E + + +QP + L+ G+ Q + A ++ +++E PT
Sbjct: 131 LNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTE 190
Query: 180 ELYTALLAAYCRNSLIDEAFVTLNQMK-----------TLPN------------------ 210
+ Y L+ AYC LI+ A V L +M+ T+ N
Sbjct: 191 DTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAID 250
Query: 211 ---------CQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
C+P TY+ +I A + + LY +M PN T ++ +
Sbjct: 251 VFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFA 310
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET 321
+ G+ ++ E + + E +PDV+ N ++ ++ G + ++ G +P+
Sbjct: 311 REGLCEKAEEIFEQLQEDGL-EPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDR 369
Query: 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
++NI++ AYG+ ++ +V E M++L T ++ ++ A+S D E ++
Sbjct: 370 ASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKE 429
Query: 382 MHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441
M G++ DT ++N Y G F K+ + ++S YN +I+ KA
Sbjct: 430 MSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGF 489
Query: 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL 488
L +E ++ +KEK+ RPD T++ AY+++ + K + +E +
Sbjct: 490 LERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMI 536
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 154/345 (44%), Gaps = 5/345 (1%)
Query: 110 TVAETFSDHVLKKQWF--QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVF 167
TV + + ++K++ +A+ VF+ +K +P TY ++ L GK+ + ++ K++
Sbjct: 229 TVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRC-KPTTETYNLMINLYGKASKSYMSWKLY 287
Query: 168 NEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD 227
EM +P YTAL+ A+ R L ++A Q++ +PDVY Y+ L+++
Sbjct: 288 CEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE-DGLEPDVYVYNALMESYSR 346
Query: 228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVW 287
A ++ M P+ + NI++ YG+AG+ E V M + P +
Sbjct: 347 AGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEM-KRLGIAPTMK 405
Query: 288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYM 347
+ +LS ++ V E ++ G++P+T N ++ YG+ + KM ++ M
Sbjct: 406 SHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEM 465
Query: 348 RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407
STYN +I + G + +E F ++ + + D T+ I Y+ L+
Sbjct: 466 ENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLY 525
Query: 408 HKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM 452
K + A + ++SAC + + ++ V + M
Sbjct: 526 VKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTM 570
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 174/393 (44%), Gaps = 35/393 (8%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+A+++F +KE P Y +L L + ++ V+ +M +G EP Y L
Sbjct: 129 RAVEMFYRIKEFG-CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVL 187
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----------AMRFELIE 235
L A C+N+ +D A L +M C PD +Y+T+I + + A RFE +
Sbjct: 188 LKALCKNNKVDGAKKLLVEMSN-KGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVV 246
Query: 236 TLY--------------------QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG 275
++Y ++M E+ ++PN ++ + ++ +G + L+
Sbjct: 247 SVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306
Query: 276 MLESATCKPDVWTMNTIL-SVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK 334
ML+ C P+++T+++++ F D ++ W + R FG+ P +N L+ +
Sbjct: 307 MLKRG-CHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSH 365
Query: 335 RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTF 394
K SV +M ++ TY ++I F+ G Y + +M G + +
Sbjct: 366 GNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVY 425
Query: 395 CCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE 454
++ F + S + + SK A +V +NA I A L E+V+++M++
Sbjct: 426 TNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQ 485
Query: 455 KH-CRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
+H C P+ T++ + + AK ++ Y L +E
Sbjct: 486 QHRCPPNIVTYNELLDGLAKANRIEEAYGLTRE 518
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 154/398 (38%), Gaps = 51/398 (12%)
Query: 94 LKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVL 153
L + L+R + T++ L+ F AL ++ + QP Y L+
Sbjct: 304 LTQMLKRGCHPNIY--TLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQG 361
Query: 154 LGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP 213
G A VF+ M E G P Y +L+ + + +D A N+M T C P
Sbjct: 362 FCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLT-SGCCP 420
Query: 214 DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL 273
+V Y+ +++A +F+ E+L + M + + P+ T N + G AG D E+V
Sbjct: 421 NVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVF 480
Query: 274 SGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK 333
M + C P++ T N +L A +++ AYG
Sbjct: 481 RQMEQQHRCPPNIVTYNELLDGLAKANRIE-------------------------EAYGL 515
Query: 334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT 393
R +MR ++ W+SSTYN ++ + G +M +G D T
Sbjct: 516 TREI--------FMRGVE--WSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEIT 565
Query: 394 FCCLINGYANAGLFHKVISSVRLAS---KLQIAENVSFYNAVISAC---IKADDLMEMER 447
+I Y G + + L S + + +S+ N + C + D ++ +E
Sbjct: 566 MNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLE- 624
Query: 448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQ 485
RM P T+S++ + ++D V A +Q
Sbjct: 625 ---RMISAGIVPSIATWSVLINCFI---LDDIVRAHDQ 656
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 10/228 (4%)
Query: 264 GMFDQMERVLSGM-LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR 322
G D ++ +L M L+ C D++ +++SV+ G + + + + FG DP +
Sbjct: 90 GQVDSVQYLLQQMKLQGFHCSEDLFI--SVISVYRQVGLAERAVEMFYRIKEFGCDPSVK 147
Query: 323 TFN-ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
+N +L G+ R+ + V M++ F TYN +++A + +
Sbjct: 148 IYNHVLDTLLGENRI-QMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVE 206
Query: 382 MHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441
M +G D ++ +I+ GL V LA + + VS YNA+I+ K D
Sbjct: 207 MSNKGCCPDAVSYTTVISSMCEVGL---VKEGRELAERFEPV--VSVYNALINGLCKEHD 261
Query: 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
+ + M EK P+ ++S + G + ++ + L+
Sbjct: 262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLK 309
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 3/139 (2%)
Query: 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411
F T T+ +I + G ++Y +QM +G F +I+ Y GL + +
Sbjct: 72 FKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV 131
Query: 412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471
+ +V YN V+ + + + + VY+ MK P+ T++++ +A
Sbjct: 132 EMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKAL 191
Query: 472 AKEGMNDKVYALEQEKLQM 490
K N+KV ++ ++M
Sbjct: 192 CK---NNKVDGAKKLLVEM 207
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 163/346 (47%), Gaps = 2/346 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G +LA + +M + IE +YT ++ A C +++A
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M +P+V TY++LI+ + R+ L DM ER + PN VT + ++ +
Sbjct: 277 LFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 335
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + E++ M++ + PD++T +++++ F ++D + +E + P
Sbjct: 336 VKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T+N LI + K + ++ + M + + TYN +I+ GD + F+
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
+M ++G+ D T+ L++G G K + K ++ ++ YN +I KA
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
+ + ++ + K +P+ ++ M + ++G+ ++ AL +E
Sbjct: 515 KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE 560
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 187/418 (44%), Gaps = 14/418 (3%)
Query: 57 SESAVAAKKRLWKEGEYPGV-SETSIPGYRSKRTPIK---NLKKKLERKAKAKAWV---N 109
+ AVA R+ G P + + ++ KR I +L KK+E K K +A V
Sbjct: 201 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME-KGKIEADVVIYT 259
Query: 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNE 169
T+ + ++ K AL +F + + +P TY L+ L G+ A ++ ++
Sbjct: 260 TIIDALCNY---KNVNDALNLFTEMDNKGI-RPNVVTYNSLIRCLCNYGRWSDASRLLSD 315
Query: 170 MVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAM 229
M+E I P ++AL+ A+ + + EA ++M + PD++TYS+LI
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHD 374
Query: 230 RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTM 289
R + + +++ M + PN VT N ++ G+ KA ++ + M + V T
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV-TY 433
Query: 290 NTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349
NT++ G DM ++ ++K + G+ P+ T++IL+ K +K V EY++K
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 493
Query: 350 LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK 409
+ TYN +IE G + F + +G+K + + +I+G+ GL +
Sbjct: 494 SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE 553
Query: 410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM 467
+ R + N YN +I A ++ D + K M+ D+ T S++
Sbjct: 554 ADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMV 611
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 159/407 (39%), Gaps = 86/407 (21%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205
+Y L+ + Q LA V +M++ G EP ++LL YC I EA ++QM
Sbjct: 117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176
Query: 206 KTL---PN-------------------------------CQPDVYTYSTLIKACVDAMRF 231
+ PN CQPD++TY T++
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236
Query: 232 EL------------IET-----------------------LYQDMDERSVTPNTVTQNIV 256
+L IE L+ +MD + + PN VT N +
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296
Query: 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316
+ G + R+LS M+E P+V T + ++ F +G++ E+ Y++
Sbjct: 297 IRCLCNYGRWSDASRLLSDMIERKI-NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 355
Query: 317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYM-RKLQFPWTSSTYNNVIEAFSDMGDAKHM 375
IDP+ T++ LI + D+ + E M K FP TYN +I+ F +
Sbjct: 356 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKRVEEG 414
Query: 376 EYTFEQMHAEGMKADTKTFCCLINGYANAG-------LFHKVISSVRLASKLQIAENVSF 428
F +M G+ +T T+ LI G AG +F K++S + ++
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD-------GVPPDIIT 467
Query: 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
Y+ ++ K L + V++ +++ PD T++IM E K G
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 133/311 (42%), Gaps = 36/311 (11%)
Query: 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
+W A ++ + E+ P T+ L+ K G+ A K+++EM++ I+P Y
Sbjct: 305 RWSDASRLLSDMIERKI-NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMD 242
++L+ +C + +DEA M + +C P+V TY+TLIK A R E L+++M
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422
Query: 243 ERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT--------------CK----- 283
+R + NTVT N ++ G +AG D +++ M+ CK
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 284 ---------------PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI 328
PD++T N ++ G+V+ + G+ P + +I
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Query: 329 GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK 388
+ +K + ++ ++ M++ S TYN +I A GD ++M + G
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFV 602
Query: 389 ADTKTFCCLIN 399
D T +IN
Sbjct: 603 GDASTISMVIN 613
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 152/361 (42%), Gaps = 18/361 (4%)
Query: 126 QALQVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA 184
A+ +F EM++ +P P + KLL + K + +L + M I Y
Sbjct: 63 DAVDLFGEMVQSRPL--PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
L+ +CR S + A L +M L +PD+ T S+L+ R L M
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKL-GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
PNTVT N ++ G + ++ M+ C+PD++T T+++ +G +D+
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG-CQPDLFTYGTVVNGLCKRGDIDL 238
Query: 305 MERWYEKFRNFGIDPETRTFNILIGAYGK-KRMYDKMSSVMEYMRKLQFPWTSSTYNNVI 363
+K I+ + + +I A K + D ++ E K P TYN++I
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP-NVVTYNSLI 297
Query: 364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL--- 420
+ G M + + TF LI+ + G K++ + +L ++
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG---KLVEAEKLYDEMIKR 354
Query: 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK-----EG 475
I ++ Y+++I+ D L E + +++ M K C P+ T++ + + + K EG
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414
Query: 476 M 476
M
Sbjct: 415 M 415
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 125/295 (42%), Gaps = 18/295 (6%)
Query: 191 RNSLID-------EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDE 243
RN L+D + F + Q + LP+ + ++ L+ A +F+L+ +L + M
Sbjct: 53 RNVLLDLKLDDAVDLFGEMVQSRPLPS----IVEFNKLLSAIAKMNKFDLVISLGERMQN 108
Query: 244 RSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD 303
++ + + NI++ + + VL M++ +PD+ T++++L+ + + ++
Sbjct: 109 LRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY-EPDIVTLSSLLNGYCHGKRIS 167
Query: 304 MMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI 363
++ P T TFN LI + ++++ M TY V+
Sbjct: 168 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 227
Query: 364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ-- 421
GD ++M ++AD + +I+ N + V ++ L +++
Sbjct: 228 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCN---YKNVNDALNLFTEMDNK 284
Query: 422 -IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
I NV YN++I + R+ M E+ P+ TFS + +A+ KEG
Sbjct: 285 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 339
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 65/165 (39%)
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
P FN L+ A K +D + S+ E M+ L+ + +YN +I F
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
+M G + D T L+NGY + + ++ V ++ N +N +I
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ E + RM + C+PD T+ + K G D +L
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSL 242
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 152/332 (45%), Gaps = 4/332 (1%)
Query: 116 SDHVLKK--QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE 173
++ VLK+ + AL F LK QP ++ TY ++ LG++ Q K+ +EMV +
Sbjct: 329 ANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRD 388
Query: 174 GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL 233
G +P Y L+ +Y R + + EA NQM+ C+PD TY TLI A ++
Sbjct: 389 GCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQE-AGCEPDRVTYCTLIDIHAKAGFLDI 447
Query: 234 IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL 293
+YQ M E ++P+T T ++++ GKAG R+ M+ C P++ T N ++
Sbjct: 448 AMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQG-CTPNLVTFNIMI 506
Query: 294 SVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP 353
++ A + + Y +N G P+ T++I++ G ++ V M++ +
Sbjct: 507 ALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWV 566
Query: 354 WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISS 413
Y +++ + G+ ++ M G++ + T L++ + + +
Sbjct: 567 PDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNL 626
Query: 414 VRLASKLQIAENVSFYNAVISACIKADDLMEM 445
++ L + ++ Y ++S C A +M
Sbjct: 627 LQSMLALGLHPSLQTYTLLLSCCTDARSNFDM 658
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 133/320 (41%), Gaps = 5/320 (1%)
Query: 72 EYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWF--QALQ 129
++ G + T++ G + + K L+ + NTV H + + +A+
Sbjct: 356 KHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMN 415
Query: 130 VFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189
VF ++E +P TY L+ + K+G ++A ++ M E G+ P Y+ ++
Sbjct: 416 VFNQMQEAGC-EPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCL 474
Query: 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN 249
+ + A +M C P++ T++ +I A +E LY+DM P+
Sbjct: 475 GKAGHLPAAHRLFCEM-VGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPD 533
Query: 250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY 309
VT +IV+ G G ++ E V + M + PD ++ ++ G VD +WY
Sbjct: 534 KVTYSIVMEVLGHCGFLEEAEGVFAEM-QRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWY 592
Query: 310 EKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369
+ G+ P T N L+ + + + ++++ M L + TY ++ +D
Sbjct: 593 QAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDA 652
Query: 370 GDAKHMEYTFEQMHAEGMKA 389
M + + M G A
Sbjct: 653 RSNFDMGFCGQLMAVSGHPA 672
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 2/189 (1%)
Query: 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM 344
D + N +L N W + R G + T+ ++G G+ + + +++ ++
Sbjct: 325 DAYQANQVLKQMDNYANALGFFYWLK--RQPGFKHDGHTYTTMVGNLGRAKQFGEINKLL 382
Query: 345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA 404
+ M + + TYN +I ++ K F QM G + D T+C LI+ +A A
Sbjct: 383 DEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKA 442
Query: 405 GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF 464
G + + + ++ + Y+ +I+ KA L R++ M + C P+ TF
Sbjct: 443 GFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTF 502
Query: 465 SIMTEAYAK 473
+IM +AK
Sbjct: 503 NIMIALHAK 511
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 1/242 (0%)
Query: 252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEK 311
T ++G G+A F ++ ++L M+ CKP+ T N ++ + + + +
Sbjct: 361 TYTTMVGNLGRAKQFGEINKLLDEMVRDG-CKPNTVTYNRLIHSYGRANYLKEAMNVFNQ 419
Query: 312 FRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD 371
+ G +P+ T+ LI + K D + + M++ + TY+ +I G
Sbjct: 420 MQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGH 479
Query: 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNA 431
F +M +G + TF +I +A A + + R + Y+
Sbjct: 480 LPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSI 539
Query: 432 VISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491
V+ L E E V+ M+ K+ PD + ++ + + K G DK + Q LQ
Sbjct: 540 VMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAG 599
Query: 492 LE 493
L
Sbjct: 600 LR 601
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 107/468 (22%), Positives = 203/468 (43%), Gaps = 17/468 (3%)
Query: 28 KTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVS------ETSI 81
+ + +++ N++L+ S+T +NK S RL+KE E + I
Sbjct: 224 RQDGYQSDFVNYSLVIQSLTRSNKIDS-------VMLLRLYKEIERDKLELDVQLVNDII 276
Query: 82 PGYRSKRTPIKNLKK-KLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFY 140
G+ P K L+ + + A T+ S + +A +FE L+ Q
Sbjct: 277 MGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELR-QSGI 335
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
+P+ Y LL K+G + A + +EM + G+ P Y+ L+ AY + A +
Sbjct: 336 KPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARI 395
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
L +M+ + QP+ + +S L+ D ++ + ++M V P+ N+V+ +
Sbjct: 396 VLKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTF 454
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
GK D ML S +PD T NT++ G+ + E +E G P
Sbjct: 455 GKFNCLDHAMTTFDRML-SEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPC 513
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T+NI+I +YG + +D M ++ M+ T+ +++ + G E
Sbjct: 514 ATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLE 573
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
+M + G+K + + LIN YA GL + +++ R+ + + ++ N++I+A +
Sbjct: 574 EMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDR 633
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL 488
E V + MKE +PD T++ + +A + KV + +E +
Sbjct: 634 RDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMI 681
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 141/300 (47%), Gaps = 4/300 (1%)
Query: 178 TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE--LIE 235
TP Y AL+ A RN+ I++A + +M+ Q D YS +I++ + + + ++
Sbjct: 196 TPLTYNALIGACARNNDIEKALNLIAKMRQ-DGYQSDFVNYSLVIQSLTRSNKIDSVMLL 254
Query: 236 TLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSV 295
LY++++ + + N ++ G+ K+G + ++L GM ++ T+ +I+S
Sbjct: 255 RLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLL-GMAQATGLSAKTATLVSIISA 313
Query: 296 FANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT 355
A+ G+ E +E+ R GI P TR +N L+ Y K S++ M K
Sbjct: 314 LADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPD 373
Query: 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR 415
TY+ +I+A+ + G + ++M A ++ ++ F L+ G+ + G + K ++
Sbjct: 374 EHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLK 433
Query: 416 LASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ + + FYN VI K + L + RM + PD T++ + + + K G
Sbjct: 434 EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHG 493
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 116/306 (37%), Gaps = 40/306 (13%)
Query: 181 LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQD 240
LY+ L+ A R+ + EAF+ L+Q +TL TY+ LI AC E L
Sbjct: 169 LYSILIHALGRSEKLYEAFL-LSQKQTLTPL-----TYNALIGACARNNDIEKALNLIAK 222
Query: 241 MDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300
M + + V ++V+ ++ D +
Sbjct: 223 MRQDGYQSDFVNYSLVIQSLTRSNKIDSV------------------------------- 251
Query: 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYN 360
M+ R Y++ ++ + + N +I + K K ++ + ++T
Sbjct: 252 ---MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLV 308
Query: 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420
++I A +D G E FE++ G+K T+ + L+ GY G S V K
Sbjct: 309 SIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKR 368
Query: 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKV 480
++ + Y+ +I A + A V K M+ +P+S FS + + G K
Sbjct: 369 GVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKT 428
Query: 481 YALEQE 486
+ + +E
Sbjct: 429 FQVLKE 434
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 149/332 (44%), Gaps = 2/332 (0%)
Query: 149 KLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL 208
KL+ L + G+P+ A +FN ++EEG +P+ YT L+ A R +++++
Sbjct: 324 KLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEK- 382
Query: 209 PNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268
+PD ++ +I A ++ + +++ M E P T N ++ GYGK G ++
Sbjct: 383 NGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEE 442
Query: 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI 328
R+L ML +P+ T N ++ + N+ +++ K +++G+ P+ TFN L
Sbjct: 443 SSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLA 502
Query: 329 GAYGK-KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM 387
AY + ++ M + T ++ + + G + F +M G+
Sbjct: 503 KAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGV 562
Query: 388 KADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER 447
+ F LI G+ N V V L + + +V ++ +++A D+ E
Sbjct: 563 HPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEE 622
Query: 448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
+Y M E PD FSI+ + YA+ G +K
Sbjct: 623 IYTDMLEGGIDPDIHAFSILAKGYARAGEPEK 654
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 177/416 (42%), Gaps = 21/416 (5%)
Query: 58 ESAVAAKKRLWKEGEYPGVSETSIP----------GYRSKRTPIKNLKKKLERKAKAKAW 107
E+ +A + ++K+ E V S P G RT + N + R +A +
Sbjct: 282 EANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSI 341
Query: 108 VNTVAE-----------TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGK 156
NT+ E T + +++ F +L E+ +P + ++ +
Sbjct: 342 FNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSE 401
Query: 157 SGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVY 216
SG + A K+F +M E G +PT + L+ Y + ++E+ L+ M QP+
Sbjct: 402 SGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDR 461
Query: 217 TYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM 276
T + L++A + + E + M V P+ VT N + Y + G E ++
Sbjct: 462 TCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPR 521
Query: 277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336
+ KP+V T TI++ + +G+++ R++ + + G+ P FN LI +
Sbjct: 522 MLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNIND 581
Query: 337 YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCC 396
D + V++ M + T++ ++ A+S +GD K E + M G+ D F
Sbjct: 582 MDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSI 641
Query: 397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM 452
L GYA AG K + K + NV Y +IS A ++ + +VYK+M
Sbjct: 642 LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 697
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%)
Query: 156 KSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV 215
++G+PE A ++ N+M + G+ P +YT +++ +C + +A +M + P++
Sbjct: 648 RAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNL 707
Query: 216 YTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265
TY TLI +A + E L +DM+ ++V P T ++ G+ G+
Sbjct: 708 TTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIGV 757
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 2/229 (0%)
Query: 103 KAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPEL 162
K K V T + + + + +AL+ F +KE + P + L+ +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVH-PNLFVFNSLIKGFLNINDMDG 584
Query: 163 ARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222
+V + M E G++P ++ L+ A+ + M PD++ +S L
Sbjct: 585 VGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE-GGIDPDIHAFSILA 643
Query: 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC 282
K A E E + M + V PN V ++ G+ AG + +V M
Sbjct: 644 KGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGL 703
Query: 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY 331
P++ T T++ F Q E + + P +T ++ +
Sbjct: 704 SPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGW 752
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 162/346 (46%), Gaps = 2/346 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G +LA + N+M + +EP +Y ++ C+ +D+A
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 277
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M+T +P+V TYS+LI + R+ L DM ER + P+ T + ++ +
Sbjct: 278 LFKEMET-KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + E++ M++ + P + T +++++ F ++D ++ +E + P+
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSI-DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T+N LI + K + ++ V M + + TYN +I+ GD + F+
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 455
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
+M ++G+ + T+ L++G G K + + ++ + YN +I KA
Sbjct: 456 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 515
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
+ + ++ + K +PD ++ M + ++G ++ AL +E
Sbjct: 516 KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKE 561
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 8/343 (2%)
Query: 136 EQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI 195
EQ +P Y ++ L K + A +F EM +GI P Y++L++ C
Sbjct: 248 EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307
Query: 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI 255
+A L+ M PDV+T+S LI A V + E LY +M +RS+ P+ VT +
Sbjct: 308 SDASRLLSDMIE-RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSS 366
Query: 256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF 315
++ G+ D+ +++ M+ S C PDV T NT++ F +V+ + +
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR 425
Query: 316 GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375
G+ T T+NILI + D + + M P TYN +++ G +
Sbjct: 426 GLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485
Query: 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAV 432
FE + M+ T+ +I G AG KV L L + +V YN +
Sbjct: 486 MVVFEYLQRSKMEPTIYTYNIMIEGMCKAG---KVEDGWDLFCNLSLKGVKPDVVAYNTM 542
Query: 433 ISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
IS + E + ++K MKE P+S ++ + A ++G
Sbjct: 543 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 585
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 154/360 (42%), Gaps = 16/360 (4%)
Query: 126 QALQVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA 184
A+ +F EM+K +PF P + KLL + K + ++ + +M GI Y+
Sbjct: 64 DAVALFGEMVKSRPF--PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
L+ +CR S + A L +M L +P++ T S+L+ + R L M
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKL-GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
PNTVT N ++ G + ++ M+ C+PD+ T +++ +G D+
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-CQPDLVTYGVVVNGLCKRGDTDL 239
Query: 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
K ++P +N +I K + D ++ + M TY+++I
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Query: 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL---Q 421
+ G M + D TF LI+ + G K++ + +L ++
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG---KLVEAEKLYDEMVKRS 356
Query: 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK-----EGM 476
I ++ Y+++I+ D L E +++++ M KHC PD T++ + + + K EGM
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 149/342 (43%), Gaps = 39/342 (11%)
Query: 93 NLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLV 152
NL K++E K + V T + S +W A ++ + E+ P T+ L+
Sbjct: 277 NLFKEMETKG-IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI-NPDVFTFSALID 334
Query: 153 LLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQ 212
K G+ A K+++EMV+ I+P+ Y++L+ +C + +DEA M + +C
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS-KHCF 393
Query: 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272
PDV TY+TLIK R E ++++M +R + NTVT NI++ G +AG D + +
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDM---------------------------- 304
M+ P++ T NT+L G+++
Sbjct: 454 FKEMVSDGV-PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512
Query: 305 ----MERWYEKFRNF---GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS 357
+E ++ F N G+ P+ +N +I + +K ++ ++ + M++ S
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399
YN +I A GD + ++M + G D T + N
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 614
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 122/291 (41%), Gaps = 10/291 (3%)
Query: 191 RNSL----IDEAFVTLNQM-KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
RN L +D+A +M K+ P P + +S L+ A +F+++ +L + M
Sbjct: 54 RNGLSELKLDDAVALFGEMVKSRP--FPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG 111
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
+ N T +I++ + + VL M++ +P++ T++++L+ + + ++
Sbjct: 112 IPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY-EPNIVTLSSLLNGYCHSKRISEA 170
Query: 306 ERWYEKFRNFGIDPETRTFNILI-GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
++ G P T TFN LI G + + + M+ + + K P TY V+
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQP-DLVTYGVVVN 229
Query: 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424
GD +M ++ + +I+G ++ + I
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP 289
Query: 425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
NV Y+++IS + R+ M E+ PD TFS + +A+ KEG
Sbjct: 290 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 340
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
P F+ L+ A K +D + S+ E M+ L P TY+ +I F
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
+M G + + T L+NGY ++ + ++ V N +N +I
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL----EQEKLQ 489
+ E + RM K C+PD T+ ++ K G D + L EQ KL+
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 153/332 (46%), Gaps = 4/332 (1%)
Query: 116 SDHVLKK--QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE 173
++ VLK+ + AL F LK QP ++ TY ++ LG++ Q K+ +EMV +
Sbjct: 334 ANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRD 393
Query: 174 GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL 233
G +P Y L+ +Y R + ++EA NQM+ C+PD TY TLI A ++
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE-AGCKPDRVTYCTLIDIHAKAGFLDI 452
Query: 234 IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL 293
+YQ M ++P+T T ++++ GKAG ++ M++ C P++ T N ++
Sbjct: 453 AMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG-CTPNLVTYNIMM 511
Query: 294 SVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP 353
+ A + Y +N G +P+ T++I++ G ++ +V M++ +
Sbjct: 512 DLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWI 571
Query: 354 WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISS 413
Y +++ + G+ + ++ M G++ + T L++ + +
Sbjct: 572 PDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYEL 631
Query: 414 VRLASKLQIAENVSFYNAVISACIKADDLMEM 445
++ L + ++ Y ++S C ++M
Sbjct: 632 LQNMLALGLRPSLQTYTLLLSCCTDGRSKLDM 663
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 133/320 (41%), Gaps = 5/320 (1%)
Query: 72 EYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWF--QALQ 129
++ G + T++ G + + K L+ + NTV H + + +A+
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420
Query: 130 VFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189
VF ++E +P TY L+ + K+G ++A ++ M G+ P Y+ ++
Sbjct: 421 VFNQMQEAGC-KPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479
Query: 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN 249
+ + A +M C P++ TY+ ++ A ++ LY+DM P+
Sbjct: 480 GKAGHLPAAHKLFCEMVD-QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538
Query: 250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY 309
VT +IV+ G G ++ E V + M + PD ++ ++ G V+ +WY
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEM-QQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597
Query: 310 EKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369
+ + G+ P T N L+ + + + +++ M L + TY ++ +D
Sbjct: 598 QAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDG 657
Query: 370 GDAKHMEYTFEQMHAEGMKA 389
M + + M + G A
Sbjct: 658 RSKLDMGFCGQLMASTGHPA 677
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 87/197 (44%), Gaps = 2/197 (1%)
Query: 277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336
L++ + D + N +L + G W + R G + T+ ++G G+ +
Sbjct: 322 LQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLK--RQPGFKHDGHTYTTMVGNLGRAKQ 379
Query: 337 YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCC 396
+ ++ +++ M + + TYN +I ++ F QM G K D T+C
Sbjct: 380 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 439
Query: 397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456
LI+ +A AG + + ++ + Y+ +I+ KA L +++ M ++
Sbjct: 440 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499
Query: 457 CRPDSETFSIMTEAYAK 473
C P+ T++IM + +AK
Sbjct: 500 CTPNLVTYNIMMDLHAK 516
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 6/210 (2%)
Query: 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS 342
K D T T++ Q + + ++ G P T T+N LI +YG+ ++ +
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420
Query: 343 VMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402
V M++ TY +I+ + G +++M A G+ DT T+ +IN
Sbjct: 421 VFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLG 480
Query: 403 NAGLF---HKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459
AG HK+ + N+ YN ++ KA + ++Y+ M+ P
Sbjct: 481 KAGHLPAAHKLFCEM---VDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537
Query: 460 DSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
D T+SI+ E G ++ A+ E Q
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQ 567
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA 404
E ++ L + N V++ +D G+A Y ++ G K D T+ ++ A
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQ--PGFKHDGHTYTTMVGNLGRA 377
Query: 405 GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF 464
F + + + N YN +I + +A+ L E V+ +M+E C+PD T+
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTY 437
Query: 465 SIMTEAYAKEGMND 478
+ + +AK G D
Sbjct: 438 CTLIDIHAKAGFLD 451
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 169/365 (46%), Gaps = 24/365 (6%)
Query: 114 TFSDHVLKKQWFQALQ-VFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVE 172
T + +K++ F ++ V +++K+ K TY L+ L K+G+ A K+F+EM E
Sbjct: 264 TIINAYVKQRDFSGVEGVLKVMKKDGVVYNKV-TYTLLMELSVKNGKMSDAEKLFDEMRE 322
Query: 173 EGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE 232
GIE +YT+L++ CR + AF+ +++ T P YTY LI
Sbjct: 323 RGIESDVHVYTSLISWNCRKGNMKRAFLLFDEL-TEKGLSPSSYTYGALIDGVCKVGEMG 381
Query: 233 LIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTI 292
E L +M + V V N ++ GY + GM D+ + ++E + DV+T NTI
Sbjct: 382 AAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYD-VMEQKGFQADVFTCNTI 440
Query: 293 LSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK-------KRMYDKMSSVME 345
S F + D ++W + G+ T ++ LI Y K KR++ +MSS
Sbjct: 441 ASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSS--- 497
Query: 346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG 405
+ +Q P + TYN +I A+ G K M A GM D+ T+ LI+G A
Sbjct: 498 --KGVQ-P-NAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIA- 552
Query: 406 LFHKVISSVRLASKLQIA---ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE 462
V ++RL S++ + +N Y +IS KA E +Y MK K D++
Sbjct: 553 --DNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNK 610
Query: 463 TFSIM 467
++ +
Sbjct: 611 VYTAL 615
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 174/391 (44%), Gaps = 24/391 (6%)
Query: 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE 173
F +V + + L+VF+ + ++ E + + LV K + +L ++F MV+
Sbjct: 160 VFRVYVDNGMFEEGLRVFDYMVKKGL-SIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDS 218
Query: 174 GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL 233
G++ T T ++ CR ++++ + + ++ +P+ YTY+T+I A V F
Sbjct: 219 GVKITVYSLTIVVEGLCRRGEVEKSKKLIKEF-SVKGIKPEAYTYNTIINAYVKQRDFSG 277
Query: 234 IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL 293
+E + + M + V N VT +++ K G E++ M E + DV +++
Sbjct: 278 VEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGI-ESDVHVYTSLI 336
Query: 294 SVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP 353
S KG + +++ G+ P + T+ LI K +M M+
Sbjct: 337 SWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVN 396
Query: 354 WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGY--------ANAG 405
T +N +I+ + G ++ M +G +AD T + + + A
Sbjct: 397 ITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQW 456
Query: 406 LFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFS 465
LF + V+L++ VS+ N + C K ++ E +R++ M K +P++ T++
Sbjct: 457 LFRMMEGGVKLST-------VSYTNLIDVYC-KEGNVEEAKRLFVEMSSKGVQPNAITYN 508
Query: 466 IMTEAYAKEGMNDKVYALEQEKLQMLLEASG 496
+M AY K+G K+ E KL+ +EA+G
Sbjct: 509 VMIYAYCKQG---KIK--EARKLRANMEANG 534
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 117/274 (42%), Gaps = 40/274 (14%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+A +F+ L E+ P TY L+ + K G+ A + NEM +G+ T ++ L
Sbjct: 347 RAFLLFDELTEKGL-SPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTL 405
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR---------FELIE- 235
+ YCR ++DEA + + M+ Q DV+T +T I +C + ++ F ++E
Sbjct: 406 IDGYCRKGMVDEASMIYDVMEQ-KGFQADVFTCNT-IASCFNRLKRYDEAKQWLFRMMEG 463
Query: 236 --------------------------TLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269
L+ +M + V PN +T N+++ Y K G +
Sbjct: 464 GVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEA 523
Query: 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG 329
++ + M E+ PD +T +++ VD R + + G+D + T+ ++I
Sbjct: 524 RKLRANM-EANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMIS 582
Query: 330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI 363
K D+ + + M++ + + Y +I
Sbjct: 583 GLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALI 616
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/197 (16%), Positives = 80/197 (40%)
Query: 290 NTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349
+ + V+ + G + R ++ G+ + R+ + + A K+R D + M
Sbjct: 158 DLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVD 217
Query: 350 LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK 409
T + V+E G+ + + ++ +G+K + T+ +IN Y F
Sbjct: 218 SGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSG 277
Query: 410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE 469
V +++ K + N Y ++ +K + + E+++ M+E+ D ++ +
Sbjct: 278 VEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLIS 337
Query: 470 AYAKEGMNDKVYALEQE 486
++G + + L E
Sbjct: 338 WNCRKGNMKRAFLLFDE 354
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 45 SVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKA 104
+V+ TN + E V KRL+ E GV +I K K K RK +A
Sbjct: 469 TVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRA 528
Query: 105 KAWVN-------TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKS 157
N T + +A+++F + + Q TY ++ L K+
Sbjct: 529 NMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQ-NSVTYTVMISGLSKA 587
Query: 158 GQPELARKVFNEMVEEGIEPTPELYTALLAA 188
G+ + A +++EM +G ++YTAL+ +
Sbjct: 588 GKSDEAFGLYDEMKRKGYTIDNKVYTALIGS 618
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 151/335 (45%), Gaps = 2/335 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY L+ G + A K+ +EM+ G++P Y ++ C+ ++D AF
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+ ++ L C+PDV +Y+ L++A ++ ++E E L M PN VT +I++
Sbjct: 285 MVRNLE-LKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 343
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
+ G ++ +L M E PD ++ + +++ F +G++D+ + E + G P+
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGL-TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 402
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
+N ++ K D+ + + ++ SS+YN + A GD +
Sbjct: 403 IVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMIL 462
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
+M + G+ D T+ +I+ G+ + + + +V YN V+ KA
Sbjct: 463 EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAH 522
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ + V + M CRP+ T++++ E G
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAG 557
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 160/358 (44%), Gaps = 4/358 (1%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+A++V E+L++ F QP Y L+ K + + A +V + M + P Y +
Sbjct: 142 KAVRVMEILEK--FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIM 199
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
+ + C +D A LNQ+ + NCQP V TY+ LI+A + + L +M R
Sbjct: 200 IGSLCSRGKLDLALKVLNQLLS-DNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG 258
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
+ P+ T N ++ G K GM D+ ++ LE C+PDV + N +L N+G+ +
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRN-LELKGCEPDVISYNILLRALLNQGKWEEG 317
Query: 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365
E+ K + DP T++ILI + ++ ++++ M++ + +Y+ +I A
Sbjct: 318 EKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAA 377
Query: 366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN 425
F G E M ++G D + ++ G + + ++ + N
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 437
Query: 426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
S YN + SA + D + + M PD T++ M +EGM D+ + L
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFEL 495
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 4/244 (1%)
Query: 234 IETLY--QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT 291
IE+L+ + M + P+ + ++ G+ + RV+ +LE +PDV+ N
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVME-ILEKFG-QPDVFAYNA 163
Query: 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351
+++ F ++D R ++ R+ P+T T+NI+IG+ + D V+ +
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223
Query: 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411
T TY +IEA G ++M + G+K D T+ +I G G+ +
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283
Query: 412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471
VR +V YN ++ A + E E++ +M + C P+ T+SI+
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 343
Query: 472 AKEG 475
++G
Sbjct: 344 CRDG 347
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 150/339 (44%), Gaps = 2/339 (0%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P TY ++ + G A K+F+EM +G+EP +T L+ YC+ + +AF
Sbjct: 384 PDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
N M C P+V TY+TLI + L +M + + PN T N ++ G
Sbjct: 444 HNHM-IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET 321
K+G ++ + L G E+A D T T++ + G++D + ++ G+ P
Sbjct: 503 KSGNIEEAVK-LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTI 561
Query: 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
TFN+L+ + M + ++ +M ++T+N++++ + + K ++
Sbjct: 562 VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKD 621
Query: 382 MHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441
M + G+ D KT+ L+ G+ A + + + +VS Y+ +I +K
Sbjct: 622 MCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKK 681
Query: 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKV 480
+E V+ +M+ + D E F ++ K D +
Sbjct: 682 FLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTI 720
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 165/368 (44%), Gaps = 9/368 (2%)
Query: 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP 179
L K W ++ E++K + +P Y ++ LL + + A + F+EM+ +GI P
Sbjct: 297 LDKVW----KLIEVMKRKGL-KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351
Query: 180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQ 239
+YT L+ +C+ I A +M + + PDV TY+ +I L+
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPDVLTYTAIISGFCQIGDMVEAGKLFH 410
Query: 240 DMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK 299
+M + + P++VT ++ GY KAG RV + M++ A C P+V T T++ +
Sbjct: 411 EMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ-AGCSPNVVTYTTLIDGLCKE 469
Query: 300 GQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY 359
G +D + G+ P T+N ++ K ++ ++ + TY
Sbjct: 470 GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTY 529
Query: 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK 419
+++A+ G+ + ++M +G++ TF L+NG+ G+ +
Sbjct: 530 TTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 589
Query: 420 LQIAENVSFYNAVISA-CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478
IA N + +N+++ CI+ ++L +YK M + PD +T+ + + + K
Sbjct: 590 KGIAPNATTFNSLVKQYCIR-NNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMK 648
Query: 479 KVYALEQE 486
+ + L QE
Sbjct: 649 EAWFLFQE 656
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/364 (20%), Positives = 149/364 (40%), Gaps = 42/364 (11%)
Query: 163 ARKVFNEMVEEGIEPTPE---LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS 219
AR+VF +M+ G+ + + +Y L+ C + A + + + C +V +Y+
Sbjct: 194 ARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTA--TAIIVFREFPEVGVCW-NVASYN 250
Query: 220 TLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES 279
+I R + L M+ + TP+ ++ + V+ GY + G D++ +++ +++
Sbjct: 251 IVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE-VMKR 309
Query: 280 ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDK 339
KP+ + +I+ + ++ E + + GI P+T + LI + K+
Sbjct: 310 KGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRA 369
Query: 340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399
S M TY +I F +GD F +M +G++ D+ TF LIN
Sbjct: 370 ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELIN 429
Query: 400 GYANAG--------------------------LFHKVISSVRLAS---------KLQIAE 424
GY AG L + L S K+ +
Sbjct: 430 GYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQP 489
Query: 425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALE 484
N+ YN++++ K+ ++ E ++ + D+ T++ + +AY K G DK +
Sbjct: 490 NIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEIL 549
Query: 485 QEKL 488
+E L
Sbjct: 550 KEML 553
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 14/181 (7%)
Query: 316 GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375
G P+ +++ ++ Y + DK+ ++E M++ S Y ++I +
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL-------QIAENVSF 428
E F +M +G+ DT + LI+G+ G +R ASK I +V
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRG-------DIRAASKFFYEMHSRDITPDVLT 388
Query: 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL 488
Y A+IS + D++E +++ M K PDS TF+ + Y K G + + +
Sbjct: 389 YTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448
Query: 489 Q 489
Q
Sbjct: 449 Q 449
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 9/196 (4%)
Query: 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM 344
D + V + G + R +EK N+G+ + N+ + K Y ++++
Sbjct: 174 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKD-CYKTATAII 232
Query: 345 EYMRKLQFP-----WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399
+ +FP W ++YN VI +G K + M +G D ++ ++N
Sbjct: 233 VFR---EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVN 289
Query: 400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459
GY G KV + + + + N Y ++I + L E E + M + P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 460 DSETFSIMTEAYAKEG 475
D+ ++ + + + K G
Sbjct: 350 DTVVYTTLIDGFCKRG 365
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/407 (22%), Positives = 174/407 (42%), Gaps = 44/407 (10%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
AL+VF+++ ++ P +Y L+ L + G+ E A + ++M E+G +P+ YT L
Sbjct: 248 DALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLP-NCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
+ A C LID+AF ++M +P C+P+V+TY+ LI + E + + M +
Sbjct: 308 IKALCDRGLIDKAFNLFDEM--IPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365
Query: 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
+ P+ +T N ++ GY K G +L+ ++E CKP+V T N ++ G+
Sbjct: 366 RIFPSVITYNALINGYCKDGRVVPAFELLT-VMEKRACKPNVRTFNELMEGLCRVGKPYK 424
Query: 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
++ + G+ P+ ++N+LI ++ + ++ M T+ +I
Sbjct: 425 AVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIIN 484
Query: 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG------LFHKVISSVRLAS 418
AF G A M +G+ D T LI+G G + + +R+ +
Sbjct: 485 AFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILT 544
Query: 419 -----------------------------KLQIAENVSFYNAVISACIKADDLMEMERVY 449
KL + +V Y ++ I++ D+ R+
Sbjct: 545 TPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRIL 604
Query: 450 KRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG 496
+ MK C P+ ++I+ + G + E EKL ++ SG
Sbjct: 605 ELMKLSGCLPNVYPYTIIINGLCQFGRVE-----EAEKLLSAMQDSG 646
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 135/342 (39%), Gaps = 8/342 (2%)
Query: 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMK 206
Y ++ L K+G E A +++++ G + T+LL +CR + +A + M
Sbjct: 198 YRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMS 257
Query: 207 TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF 266
C P+ +YS LI + R E L M E+ P+T T +++ G+
Sbjct: 258 KEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLI 317
Query: 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNI 326
D+ + M+ CKP+V T ++ G+++ K I P T+N
Sbjct: 318 DKAFNLFDEMIPRG-CKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNA 376
Query: 327 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386
LI Y K ++ M K T+N ++E +G + ++M G
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG 436
Query: 387 MKADTKTFCCLINGYANAGLF---HKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443
+ D ++ LI+G G +K++SS+ I + + A+I+A K
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNC---FDIEPDCLTFTAIINAFCKQGKAD 493
Query: 444 EMERVYKRMKEKHCRPDSETFSIMTEAYAKEG-MNDKVYALE 484
M K D T + + + K G D ++ LE
Sbjct: 494 VASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILE 535
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/380 (21%), Positives = 146/380 (38%), Gaps = 76/380 (20%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
+P TY L+ L + G+ E A V +MV++ I P+ Y AL+ YC++ + AF
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFE 392
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKA-CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
L M+ C+P+V T++ L++ C ++ + L + +D ++P+ V+ N+++ G
Sbjct: 393 LLTVMEKRA-CKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN-GLSPDIVSYNVLIDG 450
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
+ G + ++LS M +PD T I++ F +G+ D+ + GI
Sbjct: 451 LCREGHMNTAYKLLSSM-NCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISL 509
Query: 320 ETRTFNILIGAY---GKKR-----------------------MYDKMS---------SVM 344
+ T LI GK R + D +S +++
Sbjct: 510 DEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAML 569
Query: 345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA 404
+ KL + TY +++ GD E M G + + +ING
Sbjct: 570 GKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQF 629
Query: 405 GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF 464
G E E++ M++ P+ T+
Sbjct: 630 GRVE-----------------------------------EAEKLLSAMQDSGVSPNHVTY 654
Query: 465 SIMTEAYAKEGMNDKVYALE 484
++M + Y G D+ ALE
Sbjct: 655 TVMVKGYVNNGKLDR--ALE 672
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 174 GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL 233
G+ P+ YT L+ R+ I +F L MK L C P+VY Y+ +I R E
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDITGSFRILELMK-LSGCLPNVYPYTIIINGLCQFGRVEE 634
Query: 234 IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE 278
E L M + V+PN VT +++ GY G D+ + M+E
Sbjct: 635 AEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVE 679
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/350 (19%), Positives = 140/350 (40%), Gaps = 47/350 (13%)
Query: 58 ESAVAAKKRLWKEGEYPGVSETS--IPGY--RSKRTPIKNLKKKLERKAKAKAWVNTVAE 113
E A +++ K+ +P V + I GY + P L +E++A K V T E
Sbjct: 353 EEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA-CKPNVRTFNE 411
Query: 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE 173
+ ++A+ + + + + P +Y L+ L + G A K+ + M
Sbjct: 412 LMEGLCRVGKPYKAVHLLKRMLDNGL-SPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCF 470
Query: 174 GIEPTPELYTALLAAYCRNSLID--EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR- 230
IEP +TA++ A+C+ D AF+ L K + D T +TLI +
Sbjct: 471 DIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGI---SLDEVTGTTLIDGVCKVGKT 527
Query: 231 ---FELIETLYQ--------------DM-----------------DERSVTPNTVTQNIV 256
++ETL + DM ++ + P+ VT +
Sbjct: 528 RDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTL 587
Query: 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316
+ G ++G R+L +++ + C P+V+ I++ G+V+ E+ ++ G
Sbjct: 588 VDGLIRSGDITGSFRILE-LMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSG 646
Query: 317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF 366
+ P T+ +++ Y D+ + M + + Y+++++ F
Sbjct: 647 VSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGF 696
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 166/385 (43%), Gaps = 12/385 (3%)
Query: 108 VNTVAETFSDHVLKKQWF------QALQVFEMLKEQ--PFYQPKEGTYMKLLVLLGKSGQ 159
+ + FS ++L K +AL++ M+ + P +Y ++ K G
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211
Query: 160 PELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS 219
+ A ++EM++ GI P Y +++AA C+ +D+A LN M PD TY+
Sbjct: 212 SDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYN 270
Query: 220 TLIKA-CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE 278
+++ C E I L + M V P+ VT ++++ K G + ++ M +
Sbjct: 271 SILHGYCSSGQPKEAIGFL-KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329
Query: 279 SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD 338
KP++ T T+L +A KG + M + GI P+ F+ILI AY K+ D
Sbjct: 330 RGL-KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVD 388
Query: 339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI 398
+ V MR+ + TY VI G + FEQM EG+ + LI
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 448
Query: 399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR 458
+G + + + I N F+N++I + K ++E E++++ M +
Sbjct: 449 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVK 508
Query: 459 PDSETFSIMTEAYAKEGMNDKVYAL 483
P+ T++ + Y G D+ L
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKL 533
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 136/326 (41%), Gaps = 7/326 (2%)
Query: 160 PELARKVFNEMVEEGI-EPTPEL--YTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVY 216
P A +N M G E TP+L Y L+ CR +D F L + + D
Sbjct: 65 PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIK-KGFRVDAI 123
Query: 217 TYSTLIKA-CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG 275
++ L+K C D + ++ + + M E PN + NI+L G + +L
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183
Query: 276 MLE--SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK 333
M + PDV + T+++ F +G D Y + + GI P+ T+N +I A K
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243
Query: 334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT 393
+ DK V+ M K TYN+++ + G K ++M ++G++ D T
Sbjct: 244 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVT 303
Query: 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453
+ L++ G + +K + ++ Y ++ L+EM + M
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363
Query: 454 EKHCRPDSETFSIMTEAYAKEGMNDK 479
PD FSI+ AYAK+G D+
Sbjct: 364 RNGIHPDHYVFSILICAYAKQGKVDQ 389
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 142/353 (40%), Gaps = 2/353 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
+P TY L+ L K+G+ ARK+F+ M + G++P Y LL Y + E
Sbjct: 298 EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
L+ M PD Y +S LI A + + ++ M ++ + PN VT V+G
Sbjct: 358 LLDLM-VRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K+G + M++ P N+++ + + E + + GI
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGL-SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T FN +I ++ K+ + + E M ++ TYN +I + G
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
M + G+K +T T+ LINGY + + ++ ++ YN ++ +
Sbjct: 536 GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493
+ +Y R+ E + + T++I+ K + D + Q M L+
Sbjct: 596 RTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 87/422 (20%), Positives = 166/422 (39%), Gaps = 84/422 (19%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
QA+ VF +++Q P TY ++ +L KSG+ E A F +M++EG+ P +Y +L
Sbjct: 389 QAMLVFSKMRQQGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
+ C + + A + +M C ++ S + C + E E L++ M
Sbjct: 448 IHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE-SEKLFELMVRIG 506
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGM----------------------------- 276
V PN +T N ++ GY AG D+ ++LSGM
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 277 -----LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY 331
+ES+ PD+ T N IL + + Y + G E T+NI++
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626
Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
K ++ D + + + + + T+N +I+A +G + F + G+ +
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNY 686
Query: 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKR 451
T+ RL +AEN+ I L E+++++
Sbjct: 687 WTY--------------------RL-----MAENI----------IGQGLLEELDQLFLS 711
Query: 452 MKEKHCRPDSETFSIMTEAYAKEG-----------MNDKVYALEQEKLQMLLE--ASGHW 498
M++ C DS + + + G +++K ++LE + ++ + G +
Sbjct: 712 MEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKY 771
Query: 499 QQ 500
Q+
Sbjct: 772 QE 773
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 147/331 (44%), Gaps = 2/331 (0%)
Query: 162 LARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL 221
A VF EM+E + P Y L+ +C ID A ++M+T C P+V TY+TL
Sbjct: 188 FAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMET-KGCLPNVVTYNTL 246
Query: 222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT 281
I + + L + M + + PN ++ N+V+ G + G ++ VL+ M
Sbjct: 247 IDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGY 306
Query: 282 CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS 341
+V T NT++ + +G + + G+ P T+ LI + K ++
Sbjct: 307 SLDEV-TYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAM 365
Query: 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGY 401
++ MR TY +++ FS G +M+ G T+ LING+
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425
Query: 402 ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS 461
G I+ + + ++ +V Y+ V+S ++ D+ E RV + M EK +PD+
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDT 485
Query: 462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492
T+S + + + ++ + L +E L++ L
Sbjct: 486 ITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 167/367 (45%), Gaps = 21/367 (5%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y E TY L+ K G A + EM+ G+ P+ YT+L+ + C+ ++ A
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAM 365
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
L+QM+ C P+ TY+TL+ + ++M++ +P+ VT N ++ G
Sbjct: 366 EFLDQMRVRGLC-PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
+ G + VL M E PDV + +T+LS F VD R + GI P
Sbjct: 425 HCVTGKMEDAIAVLEDMKEKGL-SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKP 483
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
+T T++ LI + ++R + + E M ++ P TY +I A+ GD +
Sbjct: 484 DTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLH 543
Query: 380 EQMHAEGMKADTKTFCCLINGYANAG-----------LFHK--VISSVRLASKLQIAENV 426
+M +G+ D T+ LING LF++ V S V + ++ N+
Sbjct: 544 NEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNI 603
Query: 427 SFYNAVISA----CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA 482
F +V+S C+K + E ++V++ M K+ +PD ++IM + + G K Y
Sbjct: 604 EF-KSVVSLIKGFCMKG-MMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYT 661
Query: 483 LEQEKLQ 489
L +E ++
Sbjct: 662 LYKEMVK 668
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 155/358 (43%), Gaps = 4/358 (1%)
Query: 132 EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191
EML+ Q P TY L+ +G ++A +F++M +G P Y L+ YC+
Sbjct: 195 EMLESQ--VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Query: 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV 251
ID+ F L M L +P++ +Y+ +I R + + + +M+ R + + V
Sbjct: 253 LRKIDDGFKLLRSM-ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEV 311
Query: 252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEK 311
T N ++ GY K G F Q + + ML P V T +++ G ++ + ++
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGL-TPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370
Query: 312 FRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD 371
R G+ P RT+ L+ + +K ++ V+ M F + TYN +I G
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430
Query: 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNA 431
+ E M +G+ D ++ +++G+ + + + R + I + Y++
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490
Query: 432 VISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
+I + E +Y+ M PD T++ + AY EG +K L E ++
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE 548
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 27/300 (9%)
Query: 108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVF 167
V T + H + + A+ V E +KE+ P +Y +L +S + A +V
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGL-SPDVVSYSTVLSGFCRSYDVDEALRVK 473
Query: 168 NEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM--KTLPNCQPDVYTYSTLIKAC 225
EMVE+GI+P Y++L+ +C EA +M LP PD +TY+ LI A
Sbjct: 474 REMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLP---PDEFTYTALINAY 530
Query: 226 VDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD 285
E L+ +M E+ V P+ VT ++++ G K + +R+L + + D
Sbjct: 531 CMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSD 590
Query: 286 VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVME 345
V T +T++ +N E ++ LI + K M + V E
Sbjct: 591 V-TYHTLIENCSN--------------------IEFKSVVSLIKGFCMKGMMTEADQVFE 629
Query: 346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG 405
M + YN +I GD + +++M G T T L+ G
Sbjct: 630 SMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 112/269 (41%), Gaps = 37/269 (13%)
Query: 254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL-SVFANKGQVDMMERWYEKF 312
++V+ Y + + D+ ++ + ++ P V + N +L + +K + E +++
Sbjct: 138 DLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196
Query: 313 RNFGIDPETRTFNILIGAYG-------KKRMYDKMSS------VMEY---------MRKL 350
+ P T+NILI + ++DKM + V+ Y +RK+
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256
Query: 351 Q--FPWTSS-----------TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397
F S +YN VI G K + + +M+ G D T+ L
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316
Query: 398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC 457
I GY G FH+ + + + +V Y ++I + KA ++ +M+ +
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376
Query: 458 RPDSETFSIMTEAYAKEGMNDKVYALEQE 486
P+ T++ + + ++++G ++ Y + +E
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 1/175 (0%)
Query: 316 GIDPETRTFNILIGAYGK-KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH 374
G P ++N ++ A + KR +V + M + Q TYN +I F G+
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 375 MEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS 434
F++M +G + T+ LI+GY +R + + N+ YN VI+
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
+ + E+ V M + D T++ + + Y KEG + + E L+
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 145/361 (40%), Gaps = 39/361 (10%)
Query: 126 QALQVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA 184
A+++F E L+ Q K T+ L+ L G+ E A ++ M G EP Y
Sbjct: 189 DAMKLFDEHLRFQSCNDTK--TFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNT 246
Query: 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
L+ +C+++ +++A +K+ C PDV TY+++I A + +L DM
Sbjct: 247 LIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306
Query: 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
+ P VT N+++ GY KAG E + M+ S C PDV T +++ + GQV
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMI-SFGCFPDVVTFTSLIDGYCRVGQVSQ 365
Query: 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
R +E+ G+ P T++ILI A + K ++ + YN VI+
Sbjct: 366 GFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425
Query: 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424
F G E+M + K D TF LI G+ G + +S
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVS------------ 473
Query: 425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALE 484
++ +M C PD T S + K GM + Y L
Sbjct: 474 -----------------------IFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLN 510
Query: 485 Q 485
Q
Sbjct: 511 Q 511
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 153/368 (41%), Gaps = 44/368 (11%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR-------------- 191
TY L L K+G +LA ++F M +G+ P L L++++
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164
Query: 192 ----------NSL---------IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE 232
NSL +++A ++ +C D T++ LI+ + E
Sbjct: 165 FEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAE 223
Query: 233 LIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTI 292
L M P+ VT N ++ G+ K+ ++ + + + C PDV T ++
Sbjct: 224 KALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSM 283
Query: 293 LSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL-- 350
+S + G++ + GI P TFN+L+ Y K +M + E K+
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKA---GEMLTAEEIRGKMIS 340
Query: 351 --QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFH 408
FP T+ ++I+ + +G +E+M+A GM + T+ LIN N
Sbjct: 341 FGCFP-DVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLL 399
Query: 409 KVISSV-RLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM 467
K + +LASK I YN VI KA + E + + M++K C+PD TF+I+
Sbjct: 400 KARELLGQLASK-DIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTIL 458
Query: 468 TEAYAKEG 475
+ +G
Sbjct: 459 IIGHCMKG 466
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/278 (20%), Positives = 120/278 (43%), Gaps = 4/278 (1%)
Query: 210 NCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269
N + +TY+ L ++ A +L +++ M V+PN ++ + + G ++
Sbjct: 98 NIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKG---KL 154
Query: 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG 329
+ +L+S + +N++L+ +V+ + +++ F +T+TFNILI
Sbjct: 155 HFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIR 214
Query: 330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA 389
+K ++ M TYN +I+ F + F+ + + + +
Sbjct: 215 GLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS 274
Query: 390 -DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV 448
D T+ +I+GY AG + S + +L I +N ++ KA +++ E +
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEI 334
Query: 449 YKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
+M C PD TF+ + + Y + G + + L +E
Sbjct: 335 RGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEE 372
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 6/228 (2%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P T+ L+ K+G+ A ++ +M+ G P +T+L+ YCR + + F
Sbjct: 310 PTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRL 369
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
+M P+ +TYS LI A + R L + + + P N V+ G+
Sbjct: 370 WEEMNA-RGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET 321
KAG ++ ++ M E CKPD T ++ KG++ + K G P+
Sbjct: 429 KAGKVNEANVIVEEM-EKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK 487
Query: 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQ----FPWTSSTYNNVIEA 365
T + L+ K M + + + RK Q P + T N + A
Sbjct: 488 ITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVPLETKTANATLAA 535
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 86/205 (41%), Gaps = 3/205 (1%)
Query: 287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEY 346
WT N + G D+ + +E ++ G+ P R L+ ++ +K ++++
Sbjct: 104 WTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALL-- 161
Query: 347 MRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406
++ + N+++ + + F++ DTKTF LI G G
Sbjct: 162 LQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGK 221
Query: 407 FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH-CRPDSETFS 465
K + + + S ++ YN +I K+++L + ++K +K C PD T++
Sbjct: 222 AEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYT 281
Query: 466 IMTEAYAKEGMNDKVYALEQEKLQM 490
M Y K G + +L + L++
Sbjct: 282 SMISGYCKAGKMREASSLLDDMLRL 306
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 158/341 (46%), Gaps = 8/341 (2%)
Query: 150 LLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP 209
LL L K G+ E A ++ + +G+ P +Y ++ YCR + A + + M+
Sbjct: 360 LLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEK-Q 418
Query: 210 NCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269
+PD Y+ LI+ + E E M + V+P+ T NI++GGYG+ FD+
Sbjct: 419 GMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 478
Query: 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI- 328
+L M ++ T P+V + T+++ ++ + + G+ P+ R +N+LI
Sbjct: 479 FDILKEMEDNGT-MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLID 537
Query: 329 GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK 388
G K ++ D E ++K TYN +I+ S G E ++ +G+K
Sbjct: 538 GCCSKGKIEDAFRFSKEMLKK-GIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLK 596
Query: 389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV 448
D T+ LI+GY AG + I+ + I + Y+ +IS C K + + ER+
Sbjct: 597 PDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTK-EGIELTERL 655
Query: 449 YKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
+ M K PD ++ + YA G +K + L+++ ++
Sbjct: 656 FGEMSLK---PDLLVYNGVLHCYAVHGDMEKAFNLQKQMIE 693
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 165/371 (44%), Gaps = 9/371 (2%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+ L++F +K Y P Y L+ L K + A ++F+EM+ + P+ Y L
Sbjct: 197 KGLELFNRMKHDRIY-PSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTL 255
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
+ YC+ +++F +MK + +P + T++TL+K A E E + ++M +
Sbjct: 256 IDGYCKAGNPEKSFKVRERMKA-DHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG 314
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT---CKPDVWTMNTILSVFANKGQV 302
P+ T +I+ GY ++ E L G+ E+A K + +T + +L+ +G++
Sbjct: 315 FVPDAFTFSILFDGYSSN---EKAEAAL-GVYETAVDSGVKMNAYTCSILLNALCKEGKI 370
Query: 303 DMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV 362
+ E + G+ P +N +I Y +K +E M K YN +
Sbjct: 371 EKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCL 430
Query: 363 IEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI 422
I F ++G+ ++ E +M +G+ +T+ LI GY F K ++
Sbjct: 431 IRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGT 490
Query: 423 AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA 482
NV Y +I+ K L+E + V + M+++ P ++++ + +G + +
Sbjct: 491 MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFR 550
Query: 483 LEQEKLQMLLE 493
+E L+ +E
Sbjct: 551 FSKEMLKKGIE 561
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 165/362 (45%), Gaps = 10/362 (2%)
Query: 136 EQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI 195
E+ +P Y L+ + G+ E A K N+M +G+ P+ E Y L+ Y R
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475
Query: 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI 255
D+ F L +M+ P+V +Y TLI + + + +DM++R V+P N+
Sbjct: 476 DKCFDILKEMED-NGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNM 534
Query: 256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF 315
++ G G + R ML+ + ++ T NT++ + G++ E +
Sbjct: 535 LIDGCCSKGKIEDAFRFSKEMLKKGI-ELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRK 593
Query: 316 GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375
G+ P+ T+N LI YG + ++ E M++ T TY+ +I + G +
Sbjct: 594 GLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG----I 649
Query: 376 EYTFEQMHAE-GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS 434
E T E++ E +K D + +++ YA G K + + + I + + YN++I
Sbjct: 650 ELT-ERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLIL 708
Query: 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY--AKEGMNDKVYALEQEKLQMLL 492
+K L E+ + M + P+++T++I+ + + K+ M+ V+ E ++ LL
Sbjct: 709 GQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLL 768
Query: 493 EA 494
+
Sbjct: 769 DV 770
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 142/355 (40%), Gaps = 21/355 (5%)
Query: 138 PFYQPKE---------------GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
PF PKE +Y+ L VLL +S A +F + EGI P+ +
Sbjct: 88 PFASPKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAADLFFALRNEGIYPSSDSL 147
Query: 183 TALLAAYCRNSLIDEAFVTLNQMKTL--PNCQPDVYTYSTLIKACVDAMRFELIETLYQD 240
T LL + + VT+N + + +P + Y I+A V L+
Sbjct: 148 TLLLDHLVKTK---QFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNR 204
Query: 241 MDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300
M + P+ N+++ G K + E++ ML + P + T NT++ + G
Sbjct: 205 MKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEML-ARRLLPSLITYNTLIDGYCKAG 263
Query: 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYN 360
+ + E+ + I+P TFN L+ K M + +V++ M+ L F + T++
Sbjct: 264 NPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFS 323
Query: 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420
+ + +S A+ +E G+K + T L+N G K +
Sbjct: 324 ILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK 383
Query: 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ N YN +I + DL+ + M+++ +PD ++ + + + G
Sbjct: 384 GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELG 438
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 6/272 (2%)
Query: 129 QVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188
Q+ + E PK Y L+ G+ E A + EM+++GIE Y L+
Sbjct: 514 QIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDG 573
Query: 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP 248
+ EA L ++ + +PDV+TY++LI A + LY++M + P
Sbjct: 574 LSMTGKLSEAEDLLLEI-SRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP 632
Query: 249 NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERW 308
T ++++ K G+ + ER+ M + KPD+ N +L +A G ++
Sbjct: 633 TLKTYHLLISLCTKEGI-ELTERLFGEM----SLKPDLLVYNGVLHCYAVHGDMEKAFNL 687
Query: 309 YEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368
++ I + T+N LI K ++ S+++ M + + TYN +++ +
Sbjct: 688 QKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCE 747
Query: 369 MGDAKHMEYTFEQMHAEGMKADTKTFCCLING 400
+ D + +M +G D L++G
Sbjct: 748 VKDYMSAYVWYREMQEKGFLLDVCIGNELVSG 779
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 15/193 (7%)
Query: 292 ILSVFANKGQ-VDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL 350
+LSV N+ + + + RN GI P + + +L+ K + + +V + +
Sbjct: 114 LLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILES 173
Query: 351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG----- 405
F + Y I+A + D F +M + + + LI+G
Sbjct: 174 DFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233
Query: 406 --LFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET 463
LF ++++ L S + YN +I KA + + +V +RMK H P T
Sbjct: 234 EQLFDEMLARRLLPSLIT-------YNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLIT 286
Query: 464 FSIMTEAYAKEGM 476
F+ + + K GM
Sbjct: 287 FNTLLKGLFKAGM 299
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 172/377 (45%), Gaps = 17/377 (4%)
Query: 125 FQALQVFEMLKEQPF---------YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGI 175
F++L V LK+ P+ + +Y L+ LL KS A +V+ M+ EG
Sbjct: 160 FKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGF 219
Query: 176 EPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIE 235
P+ + Y++L+ + ID L +M+TL +P+VYT++ I+ A +
Sbjct: 220 RPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETL-GLKPNVYTFTICIRVLGRAGKINEAY 278
Query: 236 TLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSV 295
+ + MD+ P+ VT +++ A D + V M ++ KPD T T+L
Sbjct: 279 EILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM-KTGRHKPDRVTYITLLDR 337
Query: 296 FANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT 355
F++ +D +++++ + G P+ TF IL+ A K + + ++ MR
Sbjct: 338 FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN 397
Query: 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR 415
TYN +I + F M + G+K T+ I+ Y +G +S++
Sbjct: 398 LHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSG---DSVSALE 454
Query: 416 LASKLQ---IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472
K++ IA N+ NA + + KA E ++++ +K+ PDS T+++M + Y+
Sbjct: 455 TFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS 514
Query: 473 KEGMNDKVYALEQEKLQ 489
K G D+ L E ++
Sbjct: 515 KVGEIDEAIKLLSEMME 531
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 173/396 (43%), Gaps = 41/396 (10%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+A ++F +KE +P TY LL LGK+G+ + A ++F MV++G P + L
Sbjct: 556 EAWKMFMRMKEMKL-KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
C+N + A L +M + C PDV+TY+T+I V + + + M ++
Sbjct: 615 FDCLCKNDEVTLALKMLFKMMDM-GCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKL 672
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKG---Q 301
V P+ VT +L G KA + + ++++ L + +P +++ + I S+ A G
Sbjct: 673 VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNA 732
Query: 302 VDMMER--------------------------------WYEKF-RNFGIDPETRTFNILI 328
V ER +EKF ++ G+ P+ T+N+LI
Sbjct: 733 VSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLI 792
Query: 329 GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK 388
G + M + V ++ +TYN +++A+ G + +++M +
Sbjct: 793 GGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECE 852
Query: 389 ADTKTFCCLINGYANAGLFHKVIS-SVRLASKLQIAENVSFYNAVISACIKADDLMEMER 447
A+T T +I+G AG + L S + Y +I K+ L E ++
Sbjct: 853 ANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQ 912
Query: 448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+++ M + CRP+ ++I+ + K G D AL
Sbjct: 913 LFEGMLDYGCRPNCAIYNILINGFGKAGEADAACAL 948
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 149/328 (45%), Gaps = 9/328 (2%)
Query: 163 ARKVFNEMVEE-GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL 221
AR +F + ++ G++P Y L+ +I+ A Q+K+ C PDV TY+ L
Sbjct: 768 ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKS-TGCIPDVATYNFL 826
Query: 222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT 281
+ A + + + + LY++M NT+T NIV+ G KAG D + ++
Sbjct: 827 LDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 886
Query: 282 CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS 341
P T ++ + G++ ++ +E ++G P +NILI +GK D
Sbjct: 887 FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946
Query: 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGY 401
++ + M K TY+ +++ +G + F+++ G+ D + +ING
Sbjct: 947 ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006
Query: 402 ANAGLFHKVISSVRLASKLQIAENVS----FYNAVISACIKADDLMEMERVYKRMKEKHC 457
+ H++ ++ L ++++ + ++ YN++I A + E ++Y ++
Sbjct: 1007 GKS---HRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGL 1063
Query: 458 RPDSETFSIMTEAYAKEGMNDKVYALEQ 485
P+ TF+ + Y+ G + YA+ Q
Sbjct: 1064 EPNVFTFNALIRGYSLSGKPEHAYAVYQ 1091
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 162/398 (40%), Gaps = 46/398 (11%)
Query: 118 HVLKKQWF--QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGI 175
H+L K F +A++V+ + + F +P TY L+V LGK + + EM G+
Sbjct: 196 HLLLKSRFCTEAMEVYRRMILEGF-RPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGL 254
Query: 176 EPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIE 235
+P +T + R I+EA+ L +M C PDV TY+ LI A A + + +
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRMDD-EGCGPDVVTYTVLIDALCTARKLDCAK 313
Query: 236 TLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSV 295
+++ M P+ VT +L + D +++ S M E PDV T ++
Sbjct: 314 EVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEM-EKDGHVPDVVTFTILVDA 372
Query: 296 FANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT 355
G + R+ GI P T+N LI + D + M L T
Sbjct: 373 LCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPT 432
Query: 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA-------------------------- 389
+ TY I+ + GD+ TFE+M +G+
Sbjct: 433 AYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFY 492
Query: 390 ---------DTKTFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACI 437
D+ T+ ++ Y+ G ++ +++L S++ +V N++I+
Sbjct: 493 GLKDIGLVPDSVTYNMMMKCYSKVG---EIDEAIKLLSEMMENGCEPDVIVVNSLINTLY 549
Query: 438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
KAD + E +++ RMKE +P T++ + K G
Sbjct: 550 KADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG 587
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 16/333 (4%)
Query: 158 GQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYT 217
G+ E VF+ M + I+ Y + + + +A L +M+ + Y+
Sbjct: 132 GKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREF-GFVLNAYS 190
Query: 218 YSTLI------KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER 271
Y+ LI + C +AM +Y+ M P+ T + ++ G GK D +
Sbjct: 191 YNGLIHLLLKSRFCTEAME------VYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMG 244
Query: 272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY 331
+L M E+ KP+V+T + V G+++ ++ + G P+ T+ +LI A
Sbjct: 245 LLKEM-ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
R D V E M+ + TY +++ FSD D ++ + +M +G D
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363
Query: 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKR 451
TF L++ AG F + ++ + I N+ YN +I ++ L + ++
Sbjct: 364 VTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGN 423
Query: 452 MKEKHCRPDSETFSIMTEAYAKEGMNDKVYALE 484
M+ +P + T+ + + Y K G D V ALE
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSG--DSVSALE 454
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/389 (21%), Positives = 158/389 (40%), Gaps = 42/389 (10%)
Query: 129 QVFEMLKEQPFY--QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
V +LKE +P T+ + +LG++G+ A ++ M +EG P YT L+
Sbjct: 241 SVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLI 300
Query: 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV 246
A C +D A +MKT + +PD TY TL+ D + ++ + +M++
Sbjct: 301 DALCTARKLDCAKEVFEKMKTGRH-KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH 359
Query: 247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME 306
P+ VT I++ KAG F + L M + P++ T NT++ ++D
Sbjct: 360 VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGIL-PNLHTYNTLICGLLRVHRLDDAL 418
Query: 307 RWYEKFRNFGIDPETRTFNILIGAYGKK-------RMYDKMSS----------------- 342
+ + G+ P T+ + I YGK ++KM +
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 478
Query: 343 -----------VMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
+ ++ + S TYN +++ +S +G+ +M G + D
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Query: 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKR 451
LIN A + ++++ V YN +++ K + E +++
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG 598
Query: 452 MKEKHCRPDSETFSIMTEAYAKEGMNDKV 480
M +K C P++ TF+ + + K ND+V
Sbjct: 599 MVQKGCPPNTITFNTLFDCLCK---NDEV 624
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 135/316 (42%), Gaps = 39/316 (12%)
Query: 127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
A +FE + QPK TY L+ L ++ E+A+ VF ++ G P Y LL
Sbjct: 768 ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLL 827
Query: 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA--------MRFELI---- 234
AY ++ IDE F +M T C+ + T++ +I V A + ++L+
Sbjct: 828 DAYGKSGKIDELFELYKEMST-HECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 886
Query: 235 ------------------------ETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME 270
+ L++ M + PN NI++ G+GKAG D
Sbjct: 887 FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946
Query: 271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA 330
+ M++ +PD+ T + ++ G+VD ++++ + G++P+ +N++I
Sbjct: 947 ALFKRMVKEGV-RPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIING 1005
Query: 331 YGKK-RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA 389
GK R+ + + E TYN++I G + + ++ G++
Sbjct: 1006 LGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEP 1065
Query: 390 DTKTFCCLINGYANAG 405
+ TF LI GY+ +G
Sbjct: 1066 NVFTFNALIRGYSLSG 1081
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 1/234 (0%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
AL ++ L + P TY L+ L KSG+ A+++F M++ G P +Y L
Sbjct: 873 DALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNIL 932
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
+ + + D A +M +PD+ TYS L+ R + ++++ E
Sbjct: 933 INGFGKAGEADAACALFKRM-VKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
+ P+ V N+++ G GK+ ++ + + M S PD++T N+++ G V+
Sbjct: 992 LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051
Query: 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY 359
+ Y + + G++P TFN LI Y + +V + M F + TY
Sbjct: 1052 GKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 134/316 (42%), Gaps = 9/316 (2%)
Query: 164 RKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223
R V N + +G + ++ C+++ + A + QP + TY+ LI
Sbjct: 738 RLVANGICRDG----DSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIG 793
Query: 224 ACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCK 283
++A E+ + ++ + P+ T N +L YGK+G D++ + M + C+
Sbjct: 794 GLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM-STHECE 852
Query: 284 PDVWTMNTILSVFANKGQV-DMMERWYEKFRNFGIDPETRTFNILIGAYGKK-RMYDKMS 341
+ T N ++S G V D ++ +Y+ + P T+ LI K R+Y+
Sbjct: 853 ANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEA-K 911
Query: 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGY 401
+ E M + YN +I F G+A F++M EG++ D KT+ L++
Sbjct: 912 QLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCL 971
Query: 402 ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK-EKHCRPD 460
G + + + + + +V YN +I+ K+ L E ++ MK + PD
Sbjct: 972 CMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPD 1031
Query: 461 SETFSIMTEAYAKEGM 476
T++ + GM
Sbjct: 1032 LYTYNSLILNLGIAGM 1047
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/390 (22%), Positives = 153/390 (39%), Gaps = 9/390 (2%)
Query: 95 KKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLL 154
K K R + T+ + FSD+ + +++ F E+ + P T+ L+ L
Sbjct: 318 KMKTGRHKPDRVTYITLLDRFSDN----RDLDSVKQFWSEMEKDGHVPDVVTFTILVDAL 373
Query: 155 GKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD 214
K+G A + M ++GI P Y L+ R +D+A M++L +P
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL-GVKPT 432
Query: 215 VYTYSTLIK-ACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL 273
YTY I +ET ++ M + + PN V N L KAG + +++
Sbjct: 433 AYTYIVFIDYYGKSGDSVSALET-FEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF 491
Query: 274 SGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK 333
G L+ PD T N ++ ++ G++D + + G +P+ N LI K
Sbjct: 492 YG-LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYK 550
Query: 334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT 393
D+ + M++++ T TYN ++ G + FE M +G +T T
Sbjct: 551 ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTIT 610
Query: 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453
F L + + + + +V YN +I +K + E + +MK
Sbjct: 611 FNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMK 670
Query: 454 EKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
K PD T + K + + Y +
Sbjct: 671 -KLVYPDFVTLCTLLPGVVKASLIEDAYKI 699
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 147/375 (39%), Gaps = 50/375 (13%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P TY ++ L K+GQ + A F++M ++ + P LL + SLI++A+
Sbjct: 641 PDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPGVVKASLIEDAYKI 699
Query: 202 LNQMKTLPNC--QPDVYTYSTLIKA----------------------CVDA-------MR 230
+ L NC QP + LI + C D +R
Sbjct: 700 ITNF--LYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIR 757
Query: 231 FE-----------LIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES 279
+ L E +D+ V P T N+++GG +A M + + V ++S
Sbjct: 758 YSCKHNNVSGARTLFEKFTKDL---GVQPKLPTYNLLIGGLLEADMIEIAQDVFL-QVKS 813
Query: 280 ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI-GAYGKKRMYD 338
C PDV T N +L + G++D + Y++ + T T NI+I G + D
Sbjct: 814 TGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDD 873
Query: 339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI 398
+ + M F T+ TY +I+ S G + FE M G + + + LI
Sbjct: 874 ALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILI 933
Query: 399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR 458
NG+ AG + + K + ++ Y+ ++ + E +K +KE
Sbjct: 934 NGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLN 993
Query: 459 PDSETFSIMTEAYAK 473
PD ++++ K
Sbjct: 994 PDVVCYNLIINGLGK 1008
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%)
Query: 350 LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK 409
L T+ T N ++EA G + M Y F+ M +K DT T+ + + G +
Sbjct: 112 LNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQ 171
Query: 410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE 469
++R + N YN +I +K+ E VY+RM + RP +T+S +
Sbjct: 172 APYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMV 231
Query: 470 AYAKEGMNDKVYALEQE 486
K D V L +E
Sbjct: 232 GLGKRRDIDSVMGLLKE 248
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
+AL +F +K P TY L++ LG +G E A K++NE+ G+EP + AL
Sbjct: 1014 EALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNAL 1073
Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL 221
+ Y + + A+ M T P+ TY L
Sbjct: 1074 IRGYSLSGKPEHAYAVYQTMVT-GGFSPNTGTYEQL 1108
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 36/234 (15%)
Query: 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFR-NFGIDPETRTFNILIGAY 331
SG + + KPD+ + + + D +++ N + T T N ++ A
Sbjct: 69 FSGSMIRKSSKPDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEAL 128
Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH-------- 383
++M+ V + M+K ++TY + ++ S G K Y +M
Sbjct: 129 RVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNA 188
Query: 384 ---------------------------AEGMKADTKTFCCLINGYANAGLFHKVISSVRL 416
EG + +T+ L+ G V+ ++
Sbjct: 189 YSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE 248
Query: 417 ASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEA 470
L + NV + I +A + E + KRM ++ C PD T++++ +A
Sbjct: 249 METLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDA 302
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 173/403 (42%), Gaps = 41/403 (10%)
Query: 129 QVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA 187
QV+ EML+++ P TY K++ K G E A + +++VE G++P YT+L+
Sbjct: 204 QVYMEMLEDK--VCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261
Query: 188 AYCRNSLIDEAFVTLNQMKTLPNCQ----------------------------------- 212
YC+ +D AF N+M L C+
Sbjct: 262 GYCQRKDLDSAFKVFNEM-PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECF 320
Query: 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272
P V TY+ LIK+ + R L ++M+E + PN T +++ F++ +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380
Query: 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYG 332
L MLE P+V T N +++ + +G ++ E + + P TRT+N LI Y
Sbjct: 381 LGQMLEKGL-MPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC 439
Query: 333 KKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK 392
K ++ M + + + + P TYN++I+ G+ M+ G+ D
Sbjct: 440 KSNVHKAMGVLNKMLERKVLP-DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQW 498
Query: 393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM 452
T+ +I+ + + + + NV Y A+I KA + E + ++M
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 453 KEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS 495
K+C P+S TF+ + +G + LE++ +++ L+ +
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPT 601
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 152/362 (41%), Gaps = 3/362 (0%)
Query: 136 EQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI 195
E+ +P TY L+ L + E AR++ +M+E+G+ P Y AL+ YC+ +I
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409
Query: 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI 255
++A + M++ P+ TY+ LIK + + + L M ER V P+ VT N
Sbjct: 410 EDAVDVVELMES-RKLSPNTRTYNELIKGYCKSNVHKAMGVL-NKMLERKVLPDVVTYNS 467
Query: 256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF 315
++ G ++G FD R+LS M + PD WT +++ +V+ ++
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLV-PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526
Query: 316 GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375
G++P + LI Y K D+ ++E M S T+N +I G K
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Query: 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435
E+M G++ T LI+ G F S + + Y I
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQT 646
Query: 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS 495
+ L++ E + +M+E PD T+S + + Y G + + + + E S
Sbjct: 647 YCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPS 706
Query: 496 GH 497
H
Sbjct: 707 QH 708
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 147/345 (42%), Gaps = 6/345 (1%)
Query: 132 EMLKEQPF---YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188
+M K++ F Y+ G Y LL L + G + ++V+ EM+E+ + P Y ++
Sbjct: 168 KMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNG 227
Query: 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP 248
YC+ ++EA ++++ PD +TY++LI + ++ +M +
Sbjct: 228 YCKLGNVEEANQYVSKI-VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRR 286
Query: 249 NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERW 308
N V ++ G A D+ + M + C P V T ++ +
Sbjct: 287 NEVAYTHLIHGLCVARRIDEAMDLFVKM-KDDECFPTVRTYTVLIKSLCGSERKSEALNL 345
Query: 309 YEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368
++ GI P T+ +LI + + ++K ++ M + TYN +I +
Sbjct: 346 VKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCK 405
Query: 369 MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF 428
G + E M + + +T+T+ LI GY + + HK + + + ++ +V
Sbjct: 406 RGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVT 464
Query: 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473
YN++I ++ + R+ M ++ PD T++ M ++ K
Sbjct: 465 YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 158/396 (39%), Gaps = 56/396 (14%)
Query: 127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
AL + + P Y+ +Y LL LL +G + K+ M++ LY L
Sbjct: 106 ALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDL 165
Query: 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETL---YQDMDE 243
CR DE F + K + C Y+TL+ + RF L++ + Y +M E
Sbjct: 166 ---CRKMNKDERFEL--KYKLIIGC------YNTLLNS---LARFGLVDEMKQVYMEMLE 211
Query: 244 RSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD 303
V PN T N ++ GY K G ++ + +S ++E+ PD +T +++ + + +D
Sbjct: 212 DKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGL-DPDFFTYTSLIMGYCQRKDLD 270
Query: 304 MMERWYEKFRNFG--------------------ID---------------PETRTFNILI 328
+ + + G ID P RT+ +LI
Sbjct: 271 SAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330
Query: 329 GAY-GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM 387
+ G +R + ++ V E M + TY +I++ + QM +G+
Sbjct: 331 KSLCGSERKSEALNLVKE-MEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGL 389
Query: 388 KADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER 447
+ T+ LINGY G+ + V L +++ N YN +I K++ M
Sbjct: 390 MPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAM-G 448
Query: 448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
V +M E+ PD T++ + + + G D Y L
Sbjct: 449 VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 19/278 (6%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
+P TY + + G+ A + +M E G+ P Y++L+ Y + AF
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFD 693
Query: 201 TLNQMKTLPNCQPDVYTYSTLIK------------------ACVDAMRFELIETLYQDMD 242
L +M+ C+P +T+ +LIK A + M F+ + L + M
Sbjct: 694 VLKRMRD-TGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMV 752
Query: 243 ERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302
E SVTPN + ++ G + G E+V M + P N +LS +
Sbjct: 753 EHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKH 812
Query: 303 DMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV 362
+ + + G P+ + +LI KK ++ +SV + + + + + +
Sbjct: 813 NEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKII 872
Query: 363 IEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING 400
I+ G + F M G K ++T+ LI G
Sbjct: 873 IDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 154/339 (45%), Gaps = 8/339 (2%)
Query: 140 YQPKEGTYMKLL---VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID 196
Y+P T+ LL L+ + G A + MV+ G EP +Y L+ C+N ++
Sbjct: 137 YEPSIVTFGSLLHGFCLVNRIGD---AFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELN 193
Query: 197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIV 256
A LN+M+ DV TY+TL+ + R+ + +DM +RS+ P+ VT +
Sbjct: 194 IALELLNEMEK-KGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTAL 252
Query: 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316
+ + K G D+ + + M++S+ P+ T N+I++ G++ ++ ++ + G
Sbjct: 253 IDVFVKQGNLDEAQELYKEMIQSSV-DPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311
Query: 317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHME 376
P T+N LI + K RM D+ + + M F TYN +I + +G +
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371
Query: 377 YTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436
F M + + D T C L++G G + + + + YN +I
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431
Query: 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
KAD + + ++ R+ + +PD+ T++IM K G
Sbjct: 432 CKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNG 470
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 155/402 (38%), Gaps = 45/402 (11%)
Query: 75 GVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVF-EM 133
G++ ++ G+R P NL L A A+A+ + + + + ++ A +F EM
Sbjct: 8 GIATSTAKGFRRVVNP--NL---LGGGAAARAFSDYREKLRTGFLHSIRFEDAFALFFEM 62
Query: 134 LKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS 193
+ QP P + +LL + E +M GI +T L+ +CR S
Sbjct: 63 VHSQPL--PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCS 120
Query: 194 LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQ 253
+ A L +M L +P + T+ +L+ R +L M + PN V
Sbjct: 121 RLSFALSVLGKMMKLGY-EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179
Query: 254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFR 313
N ++ G K G + +L+ M E DV T NT+L+ G+ R
Sbjct: 180 NTLIDGLCKNGELNIALELLNEM-EKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMM 238
Query: 314 NFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAK 373
I+P+ TF LI + K+ D+ + + M + + TYN++I G
Sbjct: 239 KRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLY 298
Query: 374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVI 433
+ TF+ M A+ G F V++ YN +I
Sbjct: 299 DAKKTFDLM-------------------ASKGCFPNVVT----------------YNTLI 323
Query: 434 SACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
S K + E ++++RM + D T++ + Y + G
Sbjct: 324 SGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVG 365
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 30/212 (14%)
Query: 132 EMLKE--QPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189
E+ KE Q P TY ++ L G+ A+K F+ M +G P Y L++ +
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326
Query: 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN 249
C+ ++DE + L Q + D++TY+TLI + + ++ M R VTP+
Sbjct: 327 CKFRMVDEG-MKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
Query: 250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD----------VWTMNTILSVFANK 299
+T I+L G ++G +ESA K D + N ++
Sbjct: 386 IITHCILLHGL-----------CVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLC-- 432
Query: 300 GQVDMMERWYEKFRNF---GIDPETRTFNILI 328
+ D +E+ +E F G+ P+ RT+ I+I
Sbjct: 433 -KADKVEKAWELFCRLPVEGVKPDARTYTIMI 463
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 28/266 (10%)
Query: 243 ERSVTPNTVTQNIVLGGYGKAGMF-DQMERVLSGMLESATCK---------------PDV 286
R V PN +LGG A F D E++ +G L S + P +
Sbjct: 18 RRVVNPN------LLGGGAAARAFSDYREKLRTGFLHSIRFEDAFALFFEMVHSQPLPSI 71
Query: 287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEY 346
+L+ AN + + + + +K +GI + +F ILI + + SV+
Sbjct: 72 VDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGK 131
Query: 347 MRKLQFPWTSSTYNNVIEAF---SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403
M KL + + T+ +++ F + +GDA + M G + + + LI+G
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVIL---MVKSGYEPNVVVYNTLIDGLCK 188
Query: 404 AGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET 463
G + + + K + +V YN +++ + + R+ + M ++ PD T
Sbjct: 189 NGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVT 248
Query: 464 FSIMTEAYAKEGMNDKVYALEQEKLQ 489
F+ + + + K+G D+ L +E +Q
Sbjct: 249 FTALIDVFVKQGNLDEAQELYKEMIQ 274
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/274 (17%), Positives = 100/274 (36%), Gaps = 1/274 (0%)
Query: 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272
P + ++ L+ A + R+E + Q M+ ++ + + I++ + + V
Sbjct: 69 PSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSV 128
Query: 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYG 332
L M++ +P + T ++L F ++ G +P +N LI
Sbjct: 129 LGKMMKLGY-EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLC 187
Query: 333 KKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK 392
K + ++ M K TYN ++ G M + D
Sbjct: 188 KNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVV 247
Query: 393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM 452
TF LI+ + G + + + + N YN++I+ L + ++ + M
Sbjct: 248 TFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM 307
Query: 453 KEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
K C P+ T++ + + K M D+ L Q
Sbjct: 308 ASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQR 341
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 155/343 (45%), Gaps = 2/343 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ L K G +LA + +M + IE +Y ++ C+ +D+A
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALN 279
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M +PDV+TYS+LI + R+ L DM ER + PN VT + ++ +
Sbjct: 280 LFTEMDN-KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF 338
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + E++ M++ + PD++T +++++ F ++D + +E + P
Sbjct: 339 VKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
T++ LI + K + ++ + M + + TY +I F D + + F+
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 457
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
QM + G+ + T+ L++G G K + + + ++ YN +I KA
Sbjct: 458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 517
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ + ++ + K P+ ++ M + ++G ++ +L
Sbjct: 518 KVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSL 560
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 149/339 (43%), Gaps = 8/339 (2%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y+P T LL S + A + ++MVE G +P +T L+ ++ EA
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
++QM CQPD+ TY T++ +L +L + M++ + + V N ++ G
Sbjct: 209 ALVDQM-VQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 267
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
K D + + M ++ +PDV+T ++++S N G+ R I+P
Sbjct: 268 LCKYKHMDDALNLFTEM-DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINP 326
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF---SDMGDAKHME 376
TF+ LI A+ K+ + + + M K TY+++I F + +AKHM
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM- 385
Query: 377 YTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436
FE M ++ + T+ LI G+ A + + R S+ + N Y +I
Sbjct: 386 --FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Query: 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+A D + V+K+M P+ T++I+ + K G
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 186/430 (43%), Gaps = 11/430 (2%)
Query: 57 SESAVAAKKRLWKEGEYPG-VSETSIPGYRSKRTPIK---NLKKKLERKAKAKAWVNTVA 112
+ AVA ++ + G P V+ ++ KR I +L KK+E K K +A V +
Sbjct: 204 ASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME-KGKIEADV-VIY 261
Query: 113 ETFSDHVLK-KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMV 171
T D + K K AL +F + + +P TY L+ L G+ A ++ ++M+
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNKGI-RPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 172 EEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF 231
E I P ++AL+ A+ + + EA ++M + PD++TYS+LI R
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRL 379
Query: 232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT 291
+ + +++ M + PN VT + ++ G+ KA ++ + M + V T T
Sbjct: 380 DEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV-TYTT 438
Query: 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351
++ F D + +++ + G+ P T+NIL+ K K V EY+++
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 498
Query: 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411
TYN +IE G + F + +G+ + + +I+G+ G +
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEAD 558
Query: 412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471
S ++ + N YN +I A ++ D + K M+ D+ T ++T
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 618
Query: 472 AKEGMNDKVY 481
+G DK +
Sbjct: 619 -HDGRLDKSF 627
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 153/360 (42%), Gaps = 16/360 (4%)
Query: 126 QALQVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA 184
A+ +F +M+K +PF P + KLL + K + EL + +M GI Y+
Sbjct: 66 DAVDLFGDMVKSRPF--PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
+ +CR S + A L +M L +PD+ T S+L+ + R L M E
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
P+T T ++ G + ++ M++ C+PD+ T T+++ +G +D+
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG-CQPDLVTYGTVVNGLCKRGDIDL 241
Query: 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
+K I+ + +N +I K + D ++ M TY+++I
Sbjct: 242 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLIS 301
Query: 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL---Q 421
+ G M + + TF LI+ + G K++ + +L ++
Sbjct: 302 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG---KLVEAEKLYDEMIKRS 358
Query: 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK-----EGM 476
I ++ Y+++I+ D L E + +++ M K C P+ T+S + + + K EGM
Sbjct: 359 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGM 418
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 143/324 (44%), Gaps = 17/324 (5%)
Query: 163 ARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222
A +F +MV+ P+ + LL+A + + + QM+TL D+YTYS I
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL-GISHDLYTYSIFI 125
Query: 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC 282
+ L + M + P+ VT + +L GY + ++ M+E
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY- 184
Query: 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS 342
KPD +T T++ + ++ G P+ T+ ++ K+ D S
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALS 244
Query: 343 VMEYMRKLQFPWTSSTYNNVIEA---FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399
+++ M K + YN +I+ + M DA ++ F +M +G++ D T+ LI+
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNL---FTEMDNKGIRPDVFTYSSLIS 301
Query: 400 GYANAGLFHKVISSVRLASKL---QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456
N G + + RL S + +I NV ++A+I A +K L+E E++Y M ++
Sbjct: 302 CLCNYGRWS---DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 358
Query: 457 CRPDSETFSIMTEAYAKEGMNDKV 480
PD T+S + + M+D++
Sbjct: 359 IDPDIFTYSSLINGFC---MHDRL 379
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 101/249 (40%), Gaps = 1/249 (0%)
Query: 227 DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDV 286
D ++ + L+ DM + P+ V N +L K F ++ L +++ D+
Sbjct: 60 DIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKF-ELVISLGEQMQTLGISHDL 118
Query: 287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEY 346
+T + ++ F + Q+ + K G +P+ T + L+ Y + ++++
Sbjct: 119 YTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 178
Query: 347 MRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406
M ++ + + T+ +I A +QM G + D T+ ++NG G
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238
Query: 407 FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSI 466
+S ++ K +I +V YN +I K + + ++ M K RPD T+S
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS 298
Query: 467 MTEAYAKEG 475
+ G
Sbjct: 299 LISCLCNYG 307
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 62/165 (37%)
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
P FN L+ A K ++ + S+ E M+ L TY+ I F
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
+M G + D T L+NGY ++ ++ V ++ + + +I
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ E + +M ++ C+PD T+ + K G D +L
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSL 245
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 154/336 (45%), Gaps = 13/336 (3%)
Query: 159 QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT-LNQMKTLPNCQPDVYT 217
Q +L R F E +P+ LY LL + + ++ FV+ L + L P YT
Sbjct: 97 QFQLVRSRFPEN-----KPSVYLYNLLLESCIKERRVE--FVSWLYKDMVLCGIAPQTYT 149
Query: 218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277
++ LI+A D+ + L+ +M E+ PN T I++ GY KAG+ D+ +L+ M
Sbjct: 150 FNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAM- 208
Query: 278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY---GKK 334
ES P+ NTI+S F +G+ D E+ EK R G+ P+ TFN I A GK
Sbjct: 209 ESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKV 268
Query: 335 RMYDKMSSVMEYMRKLQFPWTSS-TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT 393
++ S ME L P +S TYN +++ F +G + + FE + A ++
Sbjct: 269 LDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQS 328
Query: 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453
+ + G G F + + ++ + I ++ YN ++ K L + + + MK
Sbjct: 329 YNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMK 388
Query: 454 EKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
PD+ T+ + Y G D +L QE ++
Sbjct: 389 RNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMR 424
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 148/341 (43%), Gaps = 4/341 (1%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P+ T+ L+ L S + AR++F+EM E+G +P + L+ YC+ L D+
Sbjct: 145 PQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
LN M++ P+ Y+T++ + R + E + + M E + P+ VT N +
Sbjct: 205 LNAMESF-GVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALC 263
Query: 262 KAGMFDQMERVLSGM-LES--ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGID 318
K G R+ S M L+ +P+ T N +L F G ++ + +E R
Sbjct: 264 KEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDL 323
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
+++NI + + + + +V++ M + +YN +++ +G +
Sbjct: 324 ASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTI 383
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
M G+ D T+ CL++GY + G S ++ + N N ++ + K
Sbjct: 384 VGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWK 443
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
+ E E + ++M EK D+ T +I+ + G DK
Sbjct: 444 MGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDK 484
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 133/334 (39%), Gaps = 29/334 (8%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P +Y L+ L K G A+ + M G+ P Y LL YC +D A
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSL 418
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
L +M NC P+ YT + L+ + R E L + M+E+ +TVT NI++ G
Sbjct: 419 LQEMMR-NNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLC 477
Query: 262 KAGMFDQMERVLSGM----------------------LESATCKPDVWTMNTILSVFANK 299
+G D+ ++ GM L C PD+ T +T+L+
Sbjct: 478 GSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKA 537
Query: 300 GQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY 359
G+ + + + + P++ +NI I + K+ V++ M K + TY
Sbjct: 538 GRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETY 597
Query: 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK 419
N++I + ++M +G+ + T+ I Y G KV + L +
Sbjct: 598 NSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQ-YLCEG--EKVEDATNLLDE 654
Query: 420 L---QIAENVSFYNAVISACIKADDLMEMERVYK 450
+ IA NV + +I A K D + V++
Sbjct: 655 MMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFE 688
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 103/216 (47%), Gaps = 2/216 (0%)
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGID--P 319
+A M ++++ + + +L S+ K + ++ +++S+FA +D ++ R+ + P
Sbjct: 51 RAKMHEEIQELHNLILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKP 110
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
+N+L+ + K+R + +S + + M + T+N +I A D F
Sbjct: 111 SVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELF 170
Query: 380 EQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439
++M +G K + TF L+ GY AGL K + + + N YN ++S+ +
Sbjct: 171 DEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCRE 230
Query: 440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ E++ ++M+E+ PD TF+ A KEG
Sbjct: 231 GRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEG 266
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 106/253 (41%), Gaps = 9/253 (3%)
Query: 132 EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191
EM+ E+ QP Y + K G+ A +V +M ++G + E Y +L+
Sbjct: 549 EMMGEK--LQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI 606
Query: 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV 251
+ I E +++MK P++ TY+T I+ + + E L +M ++++ PN
Sbjct: 607 KNQIFEIHGLMDEMKE-KGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVF 665
Query: 252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTM--NTILSVFANKGQVDMMERWY 309
+ ++ + K FD + V + K ++++ N +L+ GQ+
Sbjct: 666 SFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAA----GQLLKATELL 721
Query: 310 EKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369
E + G + T + L+ + KK + S ++ M + + + VI+ M
Sbjct: 722 EAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKM 781
Query: 370 GDAKHMEYTFEQM 382
G+ K ++M
Sbjct: 782 GNKKEANSFADKM 794
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/434 (21%), Positives = 182/434 (41%), Gaps = 70/434 (16%)
Query: 108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVF 167
+ T++ + + K+ A+ + + + E Y+P T+ L+ L + A +
Sbjct: 153 IVTLSSLLNGYCHSKRISDAVALVDQMVEMG-YKPDTFTFTTLIHGLFLHNKASEAVALV 211
Query: 168 NEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD 227
++MV+ G +P Y ++ C+ ID A LN+M+ + +V ++T+I +
Sbjct: 212 DQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEA-ARIKANVVIFNTIIDSLCK 270
Query: 228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVW 287
E+ L+ +M+ + + PN VT N ++ G + R+LS MLE P+V
Sbjct: 271 YRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKI-NPNVV 329
Query: 288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYG-------KKRMY--- 337
T N ++ F +G++ E+ +E+ IDP+T T+N+LI + K+M+
Sbjct: 330 TFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFM 389
Query: 338 ---DKMSSVMEY----------------------MRKLQFPWTSSTYNNVIEAFSDMGDA 372
D + ++ Y M + + TY +I+ F GD
Sbjct: 390 VSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDC 449
Query: 373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAG----------------------LFHKV 410
+ F+QM + + D T+ L++G + G +++ +
Sbjct: 450 DSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTM 509
Query: 411 ISSVRLASK----------LQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD 460
I + A K L I +V YN +IS L E + ++++MKE P+
Sbjct: 510 IEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPN 569
Query: 461 SETFSIMTEAYAKE 474
S T++ + A ++
Sbjct: 570 SGTYNTLIRANLRD 583
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 146/337 (43%), Gaps = 10/337 (2%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205
TY + + Q LA V +M++ G EP ++LL YC + I +A ++QM
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 206 KTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265
+ +PD +T++TLI + L M +R P+ VT V+ G K G
Sbjct: 180 VEMGY-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238
Query: 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN 325
D +L+ M E+A K +V NTI+ V++ + + GI P T+N
Sbjct: 239 IDLALNLLNKM-EAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYN 297
Query: 326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE 385
LI + S ++ M + + T+N +I+AF G E E+M
Sbjct: 298 SLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQR 357
Query: 386 GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE----NVSFYNAVISACIKADD 441
+ DT T+ LING+ H + + K +++ N+ YN +I+ K
Sbjct: 358 SIDPDTITYNLLINGFC----MHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKR 413
Query: 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478
+ + +++ M ++ ++ T++ + + + + G D
Sbjct: 414 VEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCD 450
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 46/351 (13%)
Query: 126 QALQVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA 184
A+ +F +M+K +PF P + KLL + K + EL + +M GI Y+
Sbjct: 66 DAVDLFGDMVKSRPF--PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
+ +CR S + A L +M L +PD+ T S+L+ + R L M E
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGY-EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
P+T T ++ G + ++ M++ C+PD+ T T+++ +G +D+
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG-CQPDLVTYGTVVNGLCKRGDIDL 241
Query: 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
K I FN +I + K R +E
Sbjct: 242 ALNLLNKMEAARIKANVVIFNTIIDSLCKYRH--------------------------VE 275
Query: 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL---Q 421
D+ F +M +G++ + T+ LIN N G + + RL S + +
Sbjct: 276 VAVDL---------FTEMETKGIRPNVVTYNSLINCLCNYGRWS---DASRLLSNMLEKK 323
Query: 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472
I NV +NA+I A K L+E E++++ M ++ PD+ T++++ +
Sbjct: 324 INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 150/362 (41%), Gaps = 48/362 (13%)
Query: 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
+W A ++ + E+ P T+ L+ K G+ A K+ EM++ I+P Y
Sbjct: 308 RWSDASRLLSNMLEKKI-NPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITY 366
Query: 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMD 242
L+ +C ++ +DEA M + +C P++ TY+TLI R E L+++M
Sbjct: 367 NLLINGFCMHNRLDEAKQMFKFMVS-KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425
Query: 243 ERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302
+R + NTVT ++ G+ +AG D + V M+ +N+
Sbjct: 426 QRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV-------------------SNRVPT 466
Query: 303 DMMERWYEKFRNFGIDPETRTFNILI---GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY 359
D+M T++IL+ +YGK D + +Y++K + Y
Sbjct: 467 DIM-----------------TYSILLHGLCSYGK---LDTALVIFKYLQKSEMELNIFIY 506
Query: 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK 419
N +IE M A + ++ + +K D T+ +I+G + L + R +
Sbjct: 507 NTMIEG---MCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563
Query: 420 LQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
N YN +I A ++ D + K M+ D+ T S++T +G DK
Sbjct: 564 DGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML-HDGRLDK 622
Query: 480 VY 481
+
Sbjct: 623 SF 624
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 127/281 (45%), Gaps = 9/281 (3%)
Query: 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272
P + ++ L+ A +FEL+ +L + M ++ + T +I + + + V
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI-GAY 331
L+ M++ +PD+ T++++L+ + + ++ ++ G P+T TF LI G +
Sbjct: 141 LAKMMKLGY-EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199
Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
+ + ++ V + +++ P TY V+ GD +M A +KA+
Sbjct: 200 LHNKASEAVALVDQMVQRGCQP-DLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANV 258
Query: 392 KTFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACIKADDLMEMERV 448
F +I+ + V +V L ++++ I NV YN++I+ + R+
Sbjct: 259 VIFNTIIDSLCK---YRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRL 315
Query: 449 YKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
M EK P+ TF+ + +A+ KEG + L +E +Q
Sbjct: 316 LSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQ 356
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 152/359 (42%), Gaps = 40/359 (11%)
Query: 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEP 177
H+ + + +AL++F M++ + P E +Y LL L K+ + +LAR + M G+
Sbjct: 343 HISEGNFKEALKMFYMMEAKGL-TPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCV 401
Query: 178 TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETL 237
YT ++ C+N +DEA V LN+M PD+ TYS LI RF+ + +
Sbjct: 402 GRITYTGMIDGLCKNGFLDEAVVLLNEMSK-DGIDPDIVTYSALINGFCKVGRFKTAKEI 460
Query: 238 YQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM-LESATCKPDVWTMNTILSVF 296
+ ++PN + + ++ + G + R+ M LE T D +T N +++
Sbjct: 461 VCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHT--RDHFTFNVLVTSL 518
Query: 297 ANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS 356
G+V E + + GI P T +F+ LI YG K SV + M K+ T
Sbjct: 519 CKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTF 578
Query: 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRL 416
TY ++++ G + E + +HA DT
Sbjct: 579 FTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT------------------------- 613
Query: 417 ASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
YN +++A K+ +L + ++ M ++ PDS T++ + ++G
Sbjct: 614 ----------VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG 662
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 144/345 (41%), Gaps = 6/345 (1%)
Query: 132 EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191
EMLK + P T+ L+ +L G E + + +M + G PT Y +L YC+
Sbjct: 183 EMLKRK--ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCK 240
Query: 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV 251
A L+ MK+ DV TY+ LI + R L +DM +R + PN V
Sbjct: 241 KGRFKAAIELLDHMKS-KGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 299
Query: 252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEK 311
T N ++ G+ G ++L+ ML S P+ T N ++ ++G + +
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEML-SFGLSPNHVTFNALIDGHISEGNFKEALKMFYM 358
Query: 312 FRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD 371
G+ P ++ +L+ K +D M++ TY +I+ G
Sbjct: 359 MEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGF 418
Query: 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNA 431
+M +G+ D T+ LING+ G F V ++ ++ N Y+
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYST 478
Query: 432 VISACIKADDLMEMERVYKRM-KEKHCRPDSETFSIMTEAYAKEG 475
+I C + L E R+Y+ M E H R D TF+++ + K G
Sbjct: 479 LIYNCCRMGCLKEAIRIYEAMILEGHTR-DHFTFNVLVTSLCKAG 522
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 141/356 (39%), Gaps = 16/356 (4%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
P E TY L+ G+ +A ++ NEM+ G+ P + AL+ + EA
Sbjct: 295 HPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALK 354
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
M+ P +Y L+ F+L Y M V +T ++ G
Sbjct: 355 MFYMMEA-KGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 413
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G D+ +L+ M + PD+ T + +++ F G+ + + G+ P
Sbjct: 414 CKNGFLDEAVVLLNEMSKDGI-DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPN 472
Query: 321 TRTFNILI------GAYGKK-RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAK 373
++ LI G + R+Y+ M ++E + F T+N ++ + G
Sbjct: 473 GIIYSTLIYNCCRMGCLKEAIRIYEAM--ILEGHTRDHF-----TFNVLVTSLCKAGKVA 525
Query: 374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVI 433
E M ++G+ +T +F CLINGY N+G K S +K+ Y +++
Sbjct: 526 EAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLL 585
Query: 434 SACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
K L E E+ K + D+ ++ + A K G K +L E +Q
Sbjct: 586 KGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQ 641
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/405 (21%), Positives = 159/405 (39%), Gaps = 18/405 (4%)
Query: 84 YRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK 143
YR R + + K L K WV +DH+++ +L Y P
Sbjct: 40 YRQARLRLVHGKLAL----KFLKWVVKQPGLETDHIVQLVCITT----HILVRARMYDPA 91
Query: 144 EGTYMKLLVLLGKSGQPELARKVFNEMVE--EGIEPTPELYTALLAAYCRNSLIDEAFVT 201
+L ++ GKS VF ++ P +Y L+ Y R +I ++
Sbjct: 92 RHILKELSLMSGKSSF------VFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEI 145
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
M L P VYT + ++ + V + + + ++M +R + P+ T NI++
Sbjct: 146 FRLMG-LYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLC 204
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET 321
G F++ ++ M E + P + T NT+L + KG+ + ++ G+D +
Sbjct: 205 AEGSFEKSSYLMQKM-EKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADV 263
Query: 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
T+N+LI + K ++ MRK TYN +I FS+ G +
Sbjct: 264 CTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNE 323
Query: 382 MHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441
M + G+ + TF LI+G+ + G F + + + + + Y ++ K +
Sbjct: 324 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAE 383
Query: 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486
Y RMK T++ M + K G D+ L E
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNE 428
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 135/346 (39%), Gaps = 1/346 (0%)
Query: 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMK 206
Y LL + KSG A +F EMV+ I P YT+L++ CR A + + +
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAE 675
Query: 207 TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF 266
N P+ Y+ + A +++ + MD TP+ VT N ++ GY + G
Sbjct: 676 ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKI 735
Query: 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNI 326
++ +L M + P++ T N +L ++ + V Y GI P+ T +
Sbjct: 736 EKTNDLLPEM-GNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHS 794
Query: 327 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386
L+ + M + +++ T+N +I G+ + M + G
Sbjct: 795 LVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 854
Query: 387 MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME 446
+ D T +++ F + + SK I+ Y +I+ + D+
Sbjct: 855 ISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAF 914
Query: 447 RVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492
V + M P + S M A AK G D+ L + L+M L
Sbjct: 915 VVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKL 960
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 5/213 (2%)
Query: 284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV 343
P V+T N IL G+ + + ++ I P+ TFNILI + ++K S +
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYL 215
Query: 344 MEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403
M+ M K + T TYN V+ + G K + M ++G+ AD T+ LI+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275
Query: 404 AGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET 463
+ K +R K I N YN +I+ ++ ++ M P+ T
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335
Query: 464 FSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG 496
F+ + + + EG N K E K+ ++EA G
Sbjct: 336 FNALIDGHISEG-NFK----EALKMFYMMEAKG 363
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 102/262 (38%), Gaps = 8/262 (3%)
Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
P + T L++ + +S E+ K+ + G+E + L++ C N I+ AF
Sbjct: 787 PDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDL 846
Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
+ M +L D T ++ RF+ + +M ++ ++P + ++ G
Sbjct: 847 VKVMTSL-GISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLC 905
Query: 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD---MMERWYEKFRNFGID 318
+ G V M+ C P+V + ++ A G+ D ++ R+ K + +
Sbjct: 906 RVGDIKTAFVVKEEMIAHKICPPNVAE-SAMVRALAKCGKADEATLLLRFMLKMK---LV 961
Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
P +F L+ K + + M +YN +I GD
Sbjct: 962 PTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFEL 1021
Query: 379 FEQMHAEGMKADTKTFCCLING 400
+E+M +G A+ T+ LI G
Sbjct: 1022 YEEMKGDGFLANATTYKALIRG 1043
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 140/335 (41%), Gaps = 3/335 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
+P TY L+ L K G+ E+A +E ++G+ P Y L+ AYC++ D A
Sbjct: 342 KPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASK 401
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
L QM C+PD+ TY LI V + + + + +R V+P+ N+++ G
Sbjct: 402 LLLQMAE-RGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGL 460
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G F + + S ML+ PD + T++ F G D + + G+ +
Sbjct: 461 CKTGRFLPAKLLFSEMLDRNIL-PDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVD 519
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
N +I + + M D+ + M M + TY+ +I+ + D F
Sbjct: 520 VVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFR 579
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
M K + T+ LING+ G F + + + NV Y +I + K
Sbjct: 580 YMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKES 639
Query: 441 DLMEMERVY-KRMKEKHCRPDSETFSIMTEAYAKE 474
+E Y + M C P+ TF+ + + + K+
Sbjct: 640 STLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKK 674
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/373 (19%), Positives = 148/373 (39%), Gaps = 46/373 (12%)
Query: 139 FYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR------- 191
FY G Y KL G E A VF E+ +G PT E + ++ +C+
Sbjct: 242 FYNTIIGGYCKL-------GDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVAS 294
Query: 192 -------------------NSLIDEAFVTLNQMKTLP----------NCQPDVYTYSTLI 222
N++ID + + K P +C+PDV TY+ LI
Sbjct: 295 DRLLSEVKERGLRVSVWFLNNIIDAKY--RHGYKVDPAESIGWIIANDCKPDVATYNILI 352
Query: 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC 282
+ E+ + ++ + PN ++ ++ Y K+ +D ++L M E C
Sbjct: 353 NRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERG-C 411
Query: 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS 342
KPD+ T ++ G +D K + G+ P+ +N+L+ K +
Sbjct: 412 KPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKL 471
Query: 343 VMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402
+ M + Y +I+ F GD F +G+K D +I G+
Sbjct: 472 LFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFC 531
Query: 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE 462
+G+ + ++ + ++ + + Y+ +I +K D+ ++++ M++ C+P+
Sbjct: 532 RSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVV 591
Query: 463 TFSIMTEAYAKEG 475
T++ + + +G
Sbjct: 592 TYTSLINGFCCQG 604
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 142/353 (40%), Gaps = 39/353 (11%)
Query: 158 GQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYT 217
G+ E+ RK+ +G P Y ++ YC+ I+ A++ ++K L P + T
Sbjct: 219 GKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELK-LKGFMPTLET 277
Query: 218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNT-VTQNIVLGGYGKAGMFDQMERVLSGM 276
+ T+I F + L ++ ER + + NI+ Y D E + G
Sbjct: 278 FGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESI--GW 335
Query: 277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336
+ + CKPDV T N +++ +G+ ++ + ++ G+ P ++ LI AY K +
Sbjct: 336 IIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKE 395
Query: 337 YDKMSSVMEYMRKLQFPWTSSTYNNVIEAF---SDMGDAKHM------------------ 375
YD S ++ M + TY +I M DA +M
Sbjct: 396 YDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNM 455
Query: 376 --------------EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ 421
+ F +M + D + LI+G+ +G F + L+ +
Sbjct: 456 LMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKG 515
Query: 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE 474
+ +V +NA+I ++ L E RM E+H PD T+S + + Y K+
Sbjct: 516 VKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQ 568
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 140/328 (42%), Gaps = 10/328 (3%)
Query: 162 LAR-KVFNEMVE-------EGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP 213
LAR ++FNE+ + E ++ T E + +L AY + + +A + + L + P
Sbjct: 109 LARYRIFNEIEDVLGNLRNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVP 168
Query: 214 DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL 273
DV ++L+ V + R +Y +M +R + + + I++ G G + +++
Sbjct: 169 DVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLI 228
Query: 274 SGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK 333
G C P++ NTI+ + G ++ +++ + G P TF +I + K
Sbjct: 229 EGRWGKG-CIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCK 287
Query: 334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT 393
+ + ++ +++ + NN+I+A G + + A K D T
Sbjct: 288 EGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVAT 347
Query: 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453
+ LIN G + + ASK + N Y +I A K+ + ++ +M
Sbjct: 348 YNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMA 407
Query: 454 EKHCRPDSETFSIMTEAYAKEG-MNDKV 480
E+ C+PD T+ I+ G M+D V
Sbjct: 408 ERGCKPDIVTYGILIHGLVVSGHMDDAV 435
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 138/319 (43%), Gaps = 47/319 (14%)
Query: 96 KKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVF-EMLKEQPFYQPKEGTYMKLLVLL 154
K++ERK + V T + +W A ++ +M+K++ P TY LL
Sbjct: 214 KEIERKG-IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK--ITPNVITYSALLDAF 270
Query: 155 GKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL---PNC 211
K+G+ A+++F EMV I+P Y++L+ C + IDEA NQM L C
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEA----NQMFDLMVSKGC 326
Query: 212 QPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER 271
DV +Y+TLI A R E L+++M +R + NTVT N ++ G+ +A
Sbjct: 327 LADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA-------- 378
Query: 272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY 331
G VD + ++ + FGI P+ T+NIL+G
Sbjct: 379 ----------------------------GDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410
Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
+K + E M+K + TY VI G + F + +G+K D
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDI 470
Query: 392 KTFCCLINGYANAGLFHKV 410
T+ +++G GL H+V
Sbjct: 471 VTYTTMMSGLCTKGLLHEV 489
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 157/345 (45%), Gaps = 4/345 (1%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y+P T L+ + + A + ++MVE G +P Y A++ + C+ +++AF
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
+++ +P+V TY+ L+ ++ R+ L DM ++ +TPN +T + +L
Sbjct: 211 DFFKEIER-KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
+ K G + + + M+ + PD+ T +++++ ++D + ++ + G
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSI-DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLA 328
Query: 320 ETRTFNILIGAYGK-KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
+ ++N LI + K KR+ D M E M + + TYN +I+ F GD +
Sbjct: 329 DVVSYNTLINGFCKAKRVEDGMKLFRE-MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEF 387
Query: 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438
F QM G+ D T+ L+ G + G K + K ++ ++ Y VI K
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447
Query: 439 ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
+ E ++ + K +PD T++ M +G+ +V AL
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEAL 492
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 144/337 (42%), Gaps = 39/337 (11%)
Query: 159 QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTY 218
Q LA + +M++ G EP +L+ +CR + + +A +++M + +PD+ Y
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY-KPDIVAY 193
Query: 219 STLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE 278
+ +I + R +++++ + + PN VT ++ G + + R+LS M++
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253
Query: 279 SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD 338
P+V T + +L F G+V + +E+ IDP+ T++ LI ++D
Sbjct: 254 KKI-TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC---LHD 309
Query: 339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI 398
++ +A M F+ M ++G AD ++ LI
Sbjct: 310 RID-----------------------------EANQM---FDLMVSKGCLADVVSYNTLI 337
Query: 399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR 458
NG+ A + R S+ + N YN +I +A D+ + + + +M
Sbjct: 338 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS 397
Query: 459 PDSETFSIMTEAYAKEGMNDKVYAL--EQEKLQMLLE 493
PD T++I+ G +K + + +K +M L+
Sbjct: 398 PDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 434
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 145/335 (43%), Gaps = 2/335 (0%)
Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
QP TY ++ + +SG LA + +M E ++ Y+ ++ + CR+ ID A
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249
Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
+M+T + V TY++L++ A ++ L +DM R + PN +T N++L +
Sbjct: 250 LFKEMET-KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVF 308
Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
K G + + M+ P++ T NT++ + + ++ + P+
Sbjct: 309 VKEGKLQEANELYKEMITRGI-SPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367
Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
TF LI Y + D V + K + TY+ +++ F G K E F+
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427
Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
+M + G+ D T+ L++G + G K + K ++ + Y +I K
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487
Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ + ++ + K +P+ T+++M K+G
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/416 (20%), Positives = 163/416 (39%), Gaps = 66/416 (15%)
Query: 54 SFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAE 113
S + + A L+KE E G+ ++S+ Y S L + L KA W N A
Sbjct: 237 SLCRDGCIDAAISLFKEMETKGI-KSSVVTYNS-------LVRGL---CKAGKW-NDGAL 284
Query: 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE 173
D V ++ P T+ LL + K G+ + A +++ EM+
Sbjct: 285 LLKDMVSRE-----------------IVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327
Query: 174 GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL 233
GI P Y L+ YC + + EA L+ M C PD+ T+++LIK R +
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLM-VRNKCSPDIVTFTSLIKGYCMVKRVDD 386
Query: 234 IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL 293
+++++ +R + N VT +I++ G
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQG---------------------------------- 412
Query: 294 SVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP 353
F G++ + E +++ + G+ P+ T+ IL+ +K + E ++K +
Sbjct: 413 --FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Query: 354 WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISS 413
Y +IE G + F + +G+K + T+ +I+G G +
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANIL 530
Query: 414 VRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE 469
+R + A N YN +I A ++ DL ++ + MK D+ + ++ +
Sbjct: 531 LRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/354 (19%), Positives = 153/354 (43%), Gaps = 11/354 (3%)
Query: 126 QALQVF-EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA 184
A+ +F EM++ +P P + + + ++ Q L ++ GI
Sbjct: 71 DAIALFQEMIRSRPL--PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNI 128
Query: 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
++ +CR A+ L ++ L +PD T++TLIK + L M E
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGY-EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187
Query: 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
P+ VT N ++ G ++G +L M E K DV+T +TI+ G +D
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKM-EERNVKADVFTYSTIIDSLCRDGCIDA 246
Query: 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
+++ GI T+N L+ K ++ + +++ M + T+N +++
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLD 306
Query: 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424
F G + +++M G+ + T+ L++GY + + + L + + +
Sbjct: 307 VFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP 366
Query: 425 NVSFYNAVISA-CI--KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
++ + ++I C+ + DD M +V++ + ++ ++ T+SI+ + + + G
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGM---KVFRNISKRGLVANAVTYSILVQGFCQSG 417
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 16/343 (4%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y+P T+ L+ L + A + + MV+ G +P Y A++ C+ D A
Sbjct: 179 YKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLAL 238
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
LN+M+ + +V YST+I + + L+ +M+ + V PN +T + ++
Sbjct: 239 NLLNKMEA-AKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 297
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
G + R+LS M+E P++ T + ++ F KG++ E+ YE+ IDP
Sbjct: 298 LCNYGRWSDASRLLSDMIERKI-NPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP 356
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYM-RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378
T++ LI + + ++E M RK P TYN +I F
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLP-NVVTYNTLINGFCKAKRVDKGMEL 415
Query: 379 FEQMHAEGMKADTKTFCCLINGY------ANAGLFHKVISSVRLASKLQIAENVSFYNAV 432
F +M G+ +T T+ LI+G+ NA + K + SV + N+ YN +
Sbjct: 416 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV------GVHPNILTYNIL 469
Query: 433 ISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+ K L + V++ ++ PD T++IM E K G
Sbjct: 470 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 512
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 141/339 (41%), Gaps = 8/339 (2%)
Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
Y+P T LL + A + ++MVE G +P +T L+ ++ EA
Sbjct: 144 YEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAV 203
Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
+++M CQPD+ TY ++ +L L M+ + N V + V+
Sbjct: 204 ALIDRM-VQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS 262
Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
K D + + M E+ +P+V T ++++S N G+ R I+P
Sbjct: 263 LCKYRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINP 321
Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF---SDMGDAKHME 376
TF+ LI A+ KK K + E M K TY+++I F +G+AK M
Sbjct: 322 NLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQM- 380
Query: 377 YTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436
E M + + T+ LING+ A K + R S+ + N Y +I
Sbjct: 381 --LELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438
Query: 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
+A D + V+K+M P+ T++I+ + K G
Sbjct: 439 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 477
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 10/319 (3%)
Query: 57 SESAVAAKKRLWKEGEYPG-VSETSIPGYRSKRTPIK---NLKKKLERKAKAKAWVNTVA 112
+ AVA R+ + G P V+ ++ KR NL K+E AK +A V +
Sbjct: 199 ASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKME-AAKIEANV-VIY 256
Query: 113 ETFSDHVLK-KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMV 171
T D + K + AL +F + E +P TY L+ L G+ A ++ ++M+
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEM-ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315
Query: 172 EEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF 231
E I P ++AL+ A+ + + +A +M + P+++TYS+LI R
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIK-RSIDPNIFTYSSLINGFCMLDRL 374
Query: 232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT 291
+ + + M + PN VT N ++ G+ KA D+ + M + V T T
Sbjct: 375 GEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTV-TYTT 433
Query: 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351
++ F D + +++ + G+ P T+NIL+ K K V EY+++
Sbjct: 434 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 493
Query: 352 FPWTSSTYNNVIEAFSDMG 370
TYN +IE G
Sbjct: 494 MEPDIYTYNIMIEGMCKAG 512
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 121/280 (43%), Gaps = 7/280 (2%)
Query: 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272
P + +S L+ A +F+L+ + + M+ ++ N T NI++ + + +
Sbjct: 76 PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135
Query: 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYG 332
L M++ +PD+ T+N++L+ F + ++ ++ G P+T TF LI
Sbjct: 136 LGKMMKLGY-EPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLF 194
Query: 333 KKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK 392
+ ++++ M + TY V+ GD +M A ++A+
Sbjct: 195 LHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVV 254
Query: 393 TFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACIKADDLMEMERVY 449
+ +I+ + ++ L ++++ + NV Y+++IS + R+
Sbjct: 255 IYSTVIDSLCK---YRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLL 311
Query: 450 KRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489
M E+ P+ TFS + +A+ K+G K L +E ++
Sbjct: 312 SDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIK 351
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 35/206 (16%)
Query: 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYG 332
L G++ + P + + +LS A + D++ + EK GI T+NILI +
Sbjct: 65 LFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFC 124
Query: 333 KKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK 392
+ +++ M KL + T N+++ F +QM G K DT
Sbjct: 125 RCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTV 184
Query: 393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM 452
TF LI+G L +K +V L RM
Sbjct: 185 TFTTLIHGLF---LHNKASEAVALID--------------------------------RM 209
Query: 453 KEKHCRPDSETFSIMTEAYAKEGMND 478
++ C+PD T+ + K G D
Sbjct: 210 VQRGCQPDLVTYGAVVNGLCKRGDTD 235
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205
TY L+ ++ + A+ VF +MV G+ P Y LL C+N + +A V +
Sbjct: 430 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 489
Query: 206 KTLPNCQPDVYTYSTLIKACVDAMRFEL 233
+ +PD+YTY+ +I+ A ++++
Sbjct: 490 QR-STMEPDIYTYNIMIEGMCKAGKWKM 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,244,734
Number of Sequences: 539616
Number of extensions: 7211118
Number of successful extensions: 27999
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 20248
Number of HSP's gapped (non-prelim): 2704
length of query: 502
length of database: 191,569,459
effective HSP length: 122
effective length of query: 380
effective length of database: 125,736,307
effective search space: 47779796660
effective search space used: 47779796660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)