Query 010740
Match_columns 502
No_of_seqs 750 out of 2598
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 04:01:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.1E-59 4.6E-64 472.7 53.4 374 115-494 413-787 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-58 2.9E-63 467.0 53.5 384 108-494 437-845 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-54 4.2E-59 434.7 42.9 371 109-493 124-526 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.1E-53 2.3E-58 429.4 44.6 367 110-490 89-455 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.5E-51 7.5E-56 420.9 41.9 366 110-487 255-651 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 5.5E-51 1.2E-55 419.4 41.1 363 109-490 122-484 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-24 3.5E-29 228.5 51.3 358 116-488 541-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-24 4.1E-29 227.9 49.5 324 118-454 475-798 (899)
9 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-20 2.5E-25 187.8 49.4 377 107-493 126-574 (615)
10 PRK11788 tetratricopeptide rep 99.9 4.8E-22 1E-26 188.0 36.1 305 151-462 42-354 (389)
11 PRK11788 tetratricopeptide rep 99.9 1.1E-21 2.4E-26 185.5 38.2 304 186-498 42-355 (389)
12 PRK15174 Vi polysaccharide exp 99.9 2E-20 4.2E-25 185.5 44.7 334 110-455 44-381 (656)
13 KOG4626 O-linked N-acetylgluco 99.9 1.3E-21 2.8E-26 177.0 31.9 374 107-498 115-493 (966)
14 PRK15174 Vi polysaccharide exp 99.9 5.8E-20 1.3E-24 182.1 44.1 362 120-493 17-384 (656)
15 PRK10049 pgaA outer membrane p 99.9 1E-18 2.3E-23 177.0 48.7 368 116-496 57-462 (765)
16 PRK11447 cellulose synthase su 99.9 4.1E-19 8.8E-24 188.3 46.5 360 116-490 277-700 (1157)
17 KOG4626 O-linked N-acetylgluco 99.9 4.3E-20 9.3E-25 167.3 31.3 355 105-477 147-506 (966)
18 PRK11447 cellulose synthase su 99.9 2.8E-18 6.1E-23 181.9 49.6 368 109-489 304-739 (1157)
19 TIGR00990 3a0801s09 mitochondr 99.9 5E-18 1.1E-22 169.1 44.5 342 146-495 129-542 (615)
20 PRK14574 hmsH outer membrane p 99.8 3E-16 6.6E-21 156.2 45.2 375 113-496 73-519 (822)
21 PRK10049 pgaA outer membrane p 99.8 8E-16 1.7E-20 156.1 44.4 379 105-496 12-428 (765)
22 PRK14574 hmsH outer membrane p 99.8 2.6E-15 5.7E-20 149.6 45.3 370 114-494 40-483 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.9E-14 4.2E-19 146.5 47.1 368 109-495 314-711 (987)
24 KOG2076 RNA polymerase III tra 99.8 4E-14 8.7E-19 134.7 41.8 364 121-491 152-556 (895)
25 KOG4422 Uncharacterized conser 99.8 1.7E-14 3.8E-19 125.8 34.5 346 141-493 204-593 (625)
26 KOG2003 TPR repeat-containing 99.8 1.5E-15 3.3E-20 133.2 27.5 366 117-495 210-694 (840)
27 PRK09782 bacteriophage N4 rece 99.8 7.8E-14 1.7E-18 142.1 43.5 355 122-493 356-743 (987)
28 KOG2002 TPR-containing nuclear 99.8 1.9E-14 4.1E-19 137.9 35.1 375 109-493 308-748 (1018)
29 PRK10747 putative protoheme IX 99.7 2.1E-13 4.5E-18 127.9 39.6 283 121-419 97-389 (398)
30 KOG4422 Uncharacterized conser 99.7 2.9E-13 6.3E-18 118.3 36.3 365 109-481 208-616 (625)
31 KOG0495 HAT repeat protein [RN 99.7 1.5E-12 3.3E-17 119.7 41.7 377 113-502 411-794 (913)
32 TIGR00540 hemY_coli hemY prote 99.7 7.5E-14 1.6E-18 131.6 34.5 292 191-491 96-400 (409)
33 PRK10747 putative protoheme IX 99.7 1.5E-13 3.1E-18 128.9 35.6 285 192-491 97-391 (398)
34 TIGR00540 hemY_coli hemY prote 99.7 5.1E-13 1.1E-17 126.0 39.4 288 120-417 96-396 (409)
35 PF13429 TPR_15: Tetratricopep 99.7 2.6E-16 5.6E-21 141.0 13.9 261 149-417 13-274 (280)
36 KOG0547 Translocase of outer m 99.7 1.7E-12 3.6E-17 115.5 36.2 371 109-491 116-567 (606)
37 KOG2002 TPR-containing nuclear 99.7 6.9E-13 1.5E-17 127.4 35.6 346 114-468 348-758 (1018)
38 KOG2076 RNA polymerase III tra 99.7 1.5E-12 3.3E-17 124.2 36.7 336 145-488 140-510 (895)
39 COG2956 Predicted N-acetylgluc 99.7 1.4E-12 3.1E-17 110.0 32.2 296 194-498 50-355 (389)
40 PF13429 TPR_15: Tetratricopep 99.7 7.1E-16 1.5E-20 138.2 12.9 259 222-489 15-276 (280)
41 KOG0495 HAT repeat protein [RN 99.7 1.4E-11 3.1E-16 113.5 39.8 364 118-499 526-889 (913)
42 KOG1155 Anaphase-promoting com 99.7 9.2E-12 2E-16 110.2 36.7 256 188-454 236-494 (559)
43 COG3071 HemY Uncharacterized e 99.6 2.5E-11 5.5E-16 105.7 38.1 285 121-418 97-388 (400)
44 KOG1126 DNA-binding cell divis 99.6 1.6E-13 3.5E-18 126.7 25.8 285 195-493 335-623 (638)
45 KOG1155 Anaphase-promoting com 99.6 2E-11 4.3E-16 108.1 37.2 332 141-491 161-496 (559)
46 COG2956 Predicted N-acetylgluc 99.6 4E-12 8.6E-17 107.3 30.7 287 120-419 47-346 (389)
47 KOG2003 TPR repeat-containing 99.6 3.2E-12 7E-17 112.7 31.4 345 119-476 248-709 (840)
48 KOG1126 DNA-binding cell divis 99.6 2.5E-13 5.5E-18 125.4 25.1 286 160-458 335-623 (638)
49 COG3071 HemY Uncharacterized e 99.6 1.8E-11 3.9E-16 106.6 34.1 287 192-490 97-390 (400)
50 KOG1915 Cell cycle control pro 99.6 6.2E-10 1.3E-14 99.1 41.8 358 120-490 85-536 (677)
51 TIGR02521 type_IV_pilW type IV 99.5 3E-11 6.6E-16 105.6 27.3 201 286-490 31-232 (234)
52 KOG1129 TPR repeat-containing 99.5 7.1E-12 1.5E-16 105.9 20.0 230 255-491 228-459 (478)
53 TIGR02521 type_IV_pilW type IV 99.5 5.6E-11 1.2E-15 103.9 26.8 164 145-313 32-196 (234)
54 PRK12370 invasion protein regu 99.5 6.8E-11 1.5E-15 116.0 29.4 251 158-421 275-536 (553)
55 PRK12370 invasion protein regu 99.5 1.2E-10 2.6E-15 114.2 30.9 272 213-495 254-540 (553)
56 PF12569 NARP1: NMDA receptor- 99.5 3.6E-10 7.8E-15 107.1 32.7 299 111-420 7-334 (517)
57 KOG0547 Translocase of outer m 99.5 3E-10 6.4E-15 101.5 29.8 337 147-494 118-536 (606)
58 KOG1915 Cell cycle control pro 99.5 2.4E-09 5.1E-14 95.5 34.9 346 142-499 71-475 (677)
59 KOG1173 Anaphase-promoting com 99.5 5E-09 1.1E-13 95.6 37.4 260 228-494 257-522 (611)
60 KOG1129 TPR repeat-containing 99.5 1.3E-11 2.8E-16 104.4 18.8 230 218-455 226-458 (478)
61 KOG1174 Anaphase-promoting com 99.4 5.1E-09 1.1E-13 91.8 34.0 296 192-496 209-506 (564)
62 PF12569 NARP1: NMDA receptor- 99.4 1.5E-09 3.2E-14 103.0 33.5 291 189-491 14-335 (517)
63 KOG1840 Kinesin light chain [C 99.4 1.5E-10 3.3E-15 108.2 25.8 241 250-490 199-479 (508)
64 KOG4318 Bicoid mRNA stability 99.4 1.5E-11 3.2E-16 117.1 19.0 274 131-441 13-286 (1088)
65 KOG1156 N-terminal acetyltrans 99.4 5.5E-08 1.2E-12 90.4 37.9 92 396-490 376-468 (700)
66 KOG4318 Bicoid mRNA stability 99.4 1.5E-10 3.3E-15 110.4 21.4 76 109-197 26-101 (1088)
67 KOG1840 Kinesin light chain [C 99.4 1.9E-09 4.1E-14 101.0 28.4 198 256-453 247-477 (508)
68 KOG1156 N-terminal acetyltrans 99.4 5.7E-08 1.2E-12 90.3 37.0 128 359-491 374-512 (700)
69 COG3063 PilF Tfp pilus assembl 99.4 2.6E-09 5.6E-14 86.5 24.8 200 109-314 36-235 (250)
70 KOG1173 Anaphase-promoting com 99.3 2.6E-09 5.6E-14 97.4 27.6 270 118-398 254-529 (611)
71 KOG3785 Uncharacterized conser 99.3 4E-08 8.7E-13 84.6 32.6 163 117-296 66-229 (557)
72 PF13041 PPR_2: PPR repeat fam 99.3 4.4E-12 9.6E-17 79.6 6.7 50 424-473 1-50 (50)
73 KOG4162 Predicted calmodulin-b 99.3 1E-07 2.2E-12 90.5 37.8 348 140-493 319-786 (799)
74 COG3063 PilF Tfp pilus assembl 99.3 3.7E-09 8E-14 85.6 23.6 202 289-494 38-240 (250)
75 PRK11189 lipoprotein NlpI; Pro 99.3 2.7E-09 5.9E-14 95.8 25.7 219 228-456 39-266 (296)
76 KOG2376 Signal recognition par 99.3 5.8E-08 1.2E-12 89.3 33.2 373 111-495 15-492 (652)
77 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.8E-16 77.5 6.8 50 213-262 1-50 (50)
78 KOG1174 Anaphase-promoting com 99.3 4.4E-08 9.6E-13 86.1 30.2 290 156-456 208-501 (564)
79 PRK11189 lipoprotein NlpI; Pro 99.3 1E-08 2.3E-13 92.1 27.4 150 123-277 41-192 (296)
80 cd05804 StaR_like StaR_like; a 99.3 1.4E-07 3E-12 88.3 35.8 201 292-493 120-339 (355)
81 KOG2047 mRNA splicing factor [ 99.3 1.3E-06 2.7E-11 81.5 40.0 371 111-492 105-581 (835)
82 PRK04841 transcriptional regul 99.2 3.5E-07 7.6E-12 96.8 39.7 379 110-491 343-761 (903)
83 KOG2047 mRNA splicing factor [ 99.2 2.3E-06 4.9E-11 79.9 38.9 224 263-490 360-615 (835)
84 cd05804 StaR_like StaR_like; a 99.2 4.5E-07 9.8E-12 84.7 34.8 199 255-455 119-336 (355)
85 KOG0548 Molecular co-chaperone 99.2 1.3E-07 2.9E-12 86.2 28.8 368 117-495 11-460 (539)
86 KOG4340 Uncharacterized conser 99.2 8.7E-08 1.9E-12 80.7 25.0 329 110-454 12-374 (459)
87 KOG3785 Uncharacterized conser 99.1 6.5E-07 1.4E-11 77.4 30.2 150 117-279 31-180 (557)
88 KOG4162 Predicted calmodulin-b 99.1 2.1E-06 4.5E-11 81.9 34.5 333 115-455 330-783 (799)
89 KOG3617 WD40 and TPR repeat-co 99.1 1.6E-07 3.4E-12 89.7 25.5 321 117-489 737-1108(1416)
90 KOG2376 Signal recognition par 99.1 2.1E-06 4.6E-11 79.3 31.8 331 146-490 14-446 (652)
91 KOG0624 dsRNA-activated protei 99.1 2.5E-06 5.5E-11 73.5 30.2 212 111-351 41-253 (504)
92 KOG0624 dsRNA-activated protei 99.0 5.1E-06 1.1E-10 71.7 30.7 270 117-421 81-371 (504)
93 KOG4340 Uncharacterized conser 99.0 7.5E-07 1.6E-11 75.2 24.8 358 114-491 50-444 (459)
94 PF04733 Coatomer_E: Coatomer 99.0 2.3E-08 5.1E-13 88.4 17.1 253 186-455 8-265 (290)
95 PRK04841 transcriptional regul 99.0 7.1E-06 1.5E-10 87.0 37.9 308 148-456 413-761 (903)
96 KOG1125 TPR repeat-containing 99.0 2.5E-07 5.5E-12 85.1 22.9 254 188-449 294-565 (579)
97 PF04733 Coatomer_E: Coatomer 99.0 1.7E-08 3.7E-13 89.3 15.0 151 258-420 110-265 (290)
98 KOG1125 TPR repeat-containing 99.0 1.2E-07 2.6E-12 87.2 20.4 251 224-483 294-564 (579)
99 PLN02789 farnesyltranstransfer 99.0 1.9E-06 4E-11 77.5 27.0 204 263-473 50-267 (320)
100 KOG1128 Uncharacterized conser 98.9 2.5E-06 5.5E-11 80.9 27.1 221 177-420 396-616 (777)
101 KOG0985 Vesicle coat protein c 98.9 1.3E-05 2.9E-10 78.8 31.2 303 143-490 983-1308(1666)
102 KOG1070 rRNA processing protei 98.9 3.2E-06 7E-11 85.6 27.6 238 247-490 1455-1700(1710)
103 KOG1070 rRNA processing protei 98.9 3.1E-06 6.6E-11 85.8 27.4 207 142-353 1456-1666(1710)
104 KOG1128 Uncharacterized conser 98.9 1E-06 2.2E-11 83.4 22.8 223 247-491 395-617 (777)
105 PLN02789 farnesyltranstransfer 98.9 5.6E-06 1.2E-10 74.4 26.9 136 119-260 48-186 (320)
106 KOG0548 Molecular co-chaperone 98.9 1.9E-06 4.1E-11 78.9 23.5 339 151-497 9-428 (539)
107 KOG3616 Selective LIM binding 98.8 5.4E-06 1.2E-10 78.7 26.4 104 262-379 744-847 (1636)
108 KOG0985 Vesicle coat protein c 98.8 5.3E-05 1.1E-09 74.7 33.4 44 114-159 844-887 (1666)
109 KOG1127 TPR repeat-containing 98.8 3.8E-06 8.3E-11 82.3 24.9 367 122-498 472-887 (1238)
110 PF12854 PPR_1: PPR repeat 98.8 6.6E-09 1.4E-13 58.3 3.7 32 456-487 2-33 (34)
111 KOG1914 mRNA cleavage and poly 98.8 0.00012 2.6E-09 67.5 35.4 378 109-493 21-504 (656)
112 PRK10370 formate-dependent nit 98.8 1.3E-06 2.9E-11 73.0 19.2 148 293-455 23-173 (198)
113 TIGR03302 OM_YfiO outer membra 98.8 2.8E-06 6.1E-11 74.1 21.1 189 283-492 30-234 (235)
114 KOG1127 TPR repeat-containing 98.7 2.6E-05 5.6E-10 76.8 28.2 157 116-278 500-658 (1238)
115 KOG3616 Selective LIM binding 98.7 1.3E-05 2.9E-10 76.1 25.0 175 109-311 733-907 (1636)
116 KOG3081 Vesicle coat complex C 98.7 3E-05 6.5E-10 64.8 24.1 138 257-406 115-256 (299)
117 TIGR03302 OM_YfiO outer membra 98.7 8.4E-06 1.8E-10 71.1 22.6 60 396-455 171-232 (235)
118 COG5010 TadD Flp pilus assembl 98.7 8.9E-06 1.9E-10 67.9 20.7 164 143-313 66-229 (257)
119 PRK15359 type III secretion sy 98.7 4.4E-07 9.4E-12 71.7 12.6 94 359-454 27-120 (144)
120 COG5010 TadD Flp pilus assembl 98.7 9.7E-06 2.1E-10 67.7 20.4 157 254-415 70-226 (257)
121 PRK14720 transcript cleavage f 98.7 2E-05 4.3E-10 79.2 26.4 239 141-437 28-268 (906)
122 PRK14720 transcript cleavage f 98.7 3.6E-05 7.8E-10 77.4 27.0 220 107-367 30-268 (906)
123 PF12854 PPR_1: PPR repeat 98.6 6.2E-08 1.3E-12 54.4 4.5 31 175-205 3-33 (34)
124 KOG3617 WD40 and TPR repeat-co 98.6 1.5E-05 3.3E-10 76.7 22.9 151 142-312 724-884 (1416)
125 KOG3081 Vesicle coat complex C 98.6 4.4E-05 9.6E-10 63.8 22.4 251 115-385 15-271 (299)
126 PRK15179 Vi polysaccharide bio 98.6 2.3E-05 5E-10 77.9 24.3 147 140-292 82-228 (694)
127 PRK15359 type III secretion sy 98.6 7.6E-06 1.7E-10 64.7 17.2 103 394-498 27-129 (144)
128 PRK10370 formate-dependent nit 98.6 5.8E-06 1.3E-10 69.2 17.3 120 157-280 52-174 (198)
129 PRK15179 Vi polysaccharide bio 98.6 6E-05 1.3E-09 75.0 26.5 181 283-473 83-267 (694)
130 KOG1914 mRNA cleavage and poly 98.6 0.0006 1.3E-08 63.1 30.9 338 141-490 17-464 (656)
131 KOG2053 Mitochondrial inherita 98.6 0.0011 2.4E-08 65.1 41.0 193 118-316 53-256 (932)
132 COG4783 Putative Zn-dependent 98.5 7.3E-05 1.6E-09 68.2 22.8 113 332-448 317-430 (484)
133 COG4783 Putative Zn-dependent 98.5 0.00081 1.7E-08 61.6 28.9 113 260-377 316-429 (484)
134 TIGR02552 LcrH_SycD type III s 98.5 5E-06 1.1E-10 65.4 13.3 99 394-494 20-118 (135)
135 KOG3060 Uncharacterized conser 98.5 0.00028 6E-09 58.8 23.2 189 121-315 25-220 (289)
136 KOG3060 Uncharacterized conser 98.4 0.00039 8.4E-09 57.9 23.0 189 158-352 26-222 (289)
137 TIGR02552 LcrH_SycD type III s 98.4 1.6E-05 3.6E-10 62.4 14.8 99 143-244 16-114 (135)
138 PF09976 TPR_21: Tetratricopep 98.2 8.6E-05 1.9E-09 59.0 15.1 126 359-487 15-144 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.6E-05 1.2E-09 69.5 15.2 126 358-490 171-297 (395)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.6E-05 1.4E-09 69.1 15.4 121 183-312 173-294 (395)
141 PF09976 TPR_21: Tetratricopep 98.2 0.00034 7.3E-09 55.6 17.3 125 111-241 15-144 (145)
142 TIGR00756 PPR pentatricopeptid 98.2 3.9E-06 8.5E-11 47.9 4.6 33 428-460 2-34 (35)
143 PF13812 PPR_3: Pentatricopept 98.2 4.3E-06 9.3E-11 47.3 4.4 33 427-459 2-34 (34)
144 KOG2053 Mitochondrial inherita 98.1 0.011 2.4E-07 58.4 37.3 230 115-353 16-258 (932)
145 cd00189 TPR Tetratricopeptide 98.1 7.9E-05 1.7E-09 54.1 11.0 95 395-491 4-98 (100)
146 TIGR00756 PPR pentatricopeptid 98.1 8E-06 1.7E-10 46.6 4.2 33 358-390 2-34 (35)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00017 3.6E-09 55.1 13.0 100 394-493 5-108 (119)
148 PF10037 MRP-S27: Mitochondria 98.0 0.00015 3.3E-09 67.0 14.1 122 283-404 63-186 (429)
149 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 45.6 4.3 32 358-389 3-34 (34)
150 PF05843 Suf: Suppressor of fo 98.0 0.00022 4.8E-09 63.5 14.3 132 358-492 3-138 (280)
151 PF10037 MRP-S27: Mitochondria 98.0 0.00014 3E-09 67.3 12.8 125 315-439 60-186 (429)
152 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.013 2.7E-07 53.4 29.2 145 127-278 28-189 (660)
153 KOG0550 Molecular chaperone (D 98.0 0.0037 8E-08 56.1 20.4 351 109-490 50-423 (486)
154 PRK15363 pathogenicity island 98.0 0.00035 7.6E-09 54.5 12.6 95 359-455 38-132 (157)
155 PRK15363 pathogenicity island 97.9 0.0006 1.3E-08 53.2 13.7 94 184-280 40-133 (157)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00043 9.3E-09 52.8 13.1 96 112-207 6-104 (119)
157 PLN03088 SGT1, suppressor of 97.9 0.00034 7.3E-09 64.7 14.6 91 115-208 9-99 (356)
158 PRK10866 outer membrane biogen 97.9 0.0081 1.8E-07 52.1 22.2 55 117-173 41-98 (243)
159 cd00189 TPR Tetratricopeptide 97.9 0.00027 5.9E-09 51.2 11.5 22 149-170 39-60 (100)
160 PLN03088 SGT1, suppressor of 97.9 0.00026 5.7E-09 65.4 13.0 102 362-467 8-109 (356)
161 PF05843 Suf: Suppressor of fo 97.9 0.00032 7E-09 62.4 13.0 124 115-243 8-135 (280)
162 PF12895 Apc3: Anaphase-promot 97.9 4.2E-05 9.2E-10 54.1 5.9 81 404-486 2-83 (84)
163 PF13432 TPR_16: Tetratricopep 97.9 7.8E-05 1.7E-09 49.7 6.8 62 432-494 3-64 (65)
164 PF08579 RPM2: Mitochondrial r 97.9 0.00034 7.4E-09 50.5 10.1 29 374-402 87-115 (120)
165 PF12895 Apc3: Anaphase-promot 97.8 3.2E-05 7E-10 54.7 4.9 81 122-204 3-83 (84)
166 COG4700 Uncharacterized protei 97.8 0.0093 2E-07 47.5 18.3 130 141-272 86-215 (251)
167 PF08579 RPM2: Mitochondrial r 97.8 0.00054 1.2E-08 49.5 10.6 79 112-191 29-116 (120)
168 PRK02603 photosystem I assembl 97.8 0.0017 3.7E-08 53.3 15.5 91 143-235 34-126 (172)
169 KOG0553 TPR repeat-containing 97.8 0.001 2.2E-08 57.2 14.0 109 109-223 82-190 (304)
170 PRK02603 photosystem I assembl 97.8 0.0018 3.9E-08 53.1 15.5 62 323-384 37-100 (172)
171 PF13414 TPR_11: TPR repeat; P 97.8 0.00013 2.8E-09 49.3 7.2 67 425-492 2-69 (69)
172 PF01535 PPR: PPR repeat; Int 97.8 3.6E-05 7.7E-10 42.4 3.6 29 428-456 2-30 (31)
173 KOG2280 Vacuolar assembly/sort 97.8 0.047 1E-06 53.2 28.1 330 114-486 443-795 (829)
174 PF04840 Vps16_C: Vps16, C-ter 97.7 0.031 6.7E-07 50.5 27.7 110 323-452 179-288 (319)
175 CHL00033 ycf3 photosystem I as 97.7 0.00095 2.1E-08 54.6 12.9 63 288-350 37-101 (168)
176 CHL00033 ycf3 photosystem I as 97.7 0.00094 2E-08 54.6 12.8 92 358-450 37-137 (168)
177 KOG0550 Molecular chaperone (D 97.7 0.031 6.8E-07 50.4 25.3 185 197-386 150-351 (486)
178 KOG0553 TPR repeat-containing 97.7 0.0026 5.7E-08 54.7 15.4 97 296-396 91-187 (304)
179 PRK10866 outer membrane biogen 97.7 0.017 3.8E-07 50.1 20.8 176 292-487 38-238 (243)
180 KOG1130 Predicted G-alpha GTPa 97.7 0.001 2.3E-08 59.4 13.1 285 152-453 25-342 (639)
181 PRK10153 DNA-binding transcrip 97.7 0.0029 6.3E-08 61.3 17.5 65 427-493 421-485 (517)
182 PRK10153 DNA-binding transcrip 97.7 0.0036 7.9E-08 60.6 18.1 134 141-278 334-481 (517)
183 PF14938 SNAP: Soluble NSF att 97.7 0.011 2.3E-07 53.1 19.9 61 359-419 158-224 (282)
184 PF01535 PPR: PPR repeat; Int 97.7 6.6E-05 1.4E-09 41.2 3.6 30 146-175 2-31 (31)
185 KOG2041 WD40 repeat protein [G 97.7 0.0042 9E-08 59.5 17.0 246 176-454 689-951 (1189)
186 COG4700 Uncharacterized protei 97.7 0.012 2.7E-07 46.8 16.9 130 317-450 85-217 (251)
187 PF14938 SNAP: Soluble NSF att 97.7 0.0025 5.4E-08 57.0 15.3 210 108-349 35-265 (282)
188 KOG1130 Predicted G-alpha GTPa 97.6 0.0012 2.6E-08 59.1 12.4 136 357-492 196-346 (639)
189 PF13525 YfiO: Outer membrane 97.6 0.022 4.7E-07 48.1 19.6 180 110-305 7-197 (203)
190 PF14559 TPR_19: Tetratricopep 97.6 0.00027 5.8E-09 47.6 6.6 52 120-173 3-54 (68)
191 COG4235 Cytochrome c biogenesi 97.6 0.0041 8.9E-08 53.8 14.8 102 390-493 155-259 (287)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.0074 1.6E-07 45.4 14.0 53 154-206 11-65 (120)
193 PF12688 TPR_5: Tetratrico pep 97.5 0.012 2.5E-07 44.4 14.7 91 362-453 7-102 (120)
194 PF06239 ECSIT: Evolutionarily 97.5 0.0042 9.2E-08 51.0 12.9 105 283-406 44-153 (228)
195 PF14559 TPR_19: Tetratricopep 97.5 0.00075 1.6E-08 45.4 7.4 63 155-221 2-64 (68)
196 PF06239 ECSIT: Evolutionarily 97.5 0.0063 1.4E-07 50.1 13.5 33 196-229 120-152 (228)
197 COG3898 Uncharacterized membra 97.4 0.087 1.9E-06 47.4 30.3 284 156-455 96-392 (531)
198 KOG2796 Uncharacterized conser 97.4 0.044 9.6E-07 46.4 17.7 130 147-278 180-314 (366)
199 PF13432 TPR_16: Tetratricopep 97.4 0.0012 2.6E-08 43.8 7.4 56 116-173 5-60 (65)
200 COG3898 Uncharacterized membra 97.4 0.096 2.1E-06 47.1 31.2 295 181-490 84-392 (531)
201 COG4235 Cytochrome c biogenesi 97.3 0.02 4.3E-07 49.7 15.7 105 348-455 149-256 (287)
202 PRK10803 tol-pal system protei 97.3 0.0066 1.4E-07 53.1 13.1 100 394-494 146-250 (263)
203 PF13525 YfiO: Outer membrane 97.3 0.095 2.1E-06 44.3 19.5 45 432-478 147-195 (203)
204 PF13414 TPR_11: TPR repeat; P 97.2 0.0021 4.6E-08 43.3 7.4 63 391-454 3-66 (69)
205 PF13371 TPR_9: Tetratricopept 97.2 0.0013 2.8E-08 44.9 6.4 58 435-493 4-61 (73)
206 PF13424 TPR_12: Tetratricopep 97.2 0.0012 2.6E-08 45.8 5.6 64 427-490 6-75 (78)
207 PRK15331 chaperone protein Sic 97.1 0.019 4.1E-07 45.3 12.4 88 365-454 46-133 (165)
208 PF13281 DUF4071: Domain of un 97.1 0.15 3.1E-06 46.8 19.8 167 287-455 142-334 (374)
209 PF03704 BTAD: Bacterial trans 97.1 0.01 2.2E-07 47.2 11.5 74 107-182 61-139 (146)
210 PRK10803 tol-pal system protei 97.1 0.011 2.3E-07 51.8 12.3 87 119-207 154-245 (263)
211 KOG2041 WD40 repeat protein [G 97.1 0.3 6.4E-06 47.5 27.6 75 157-240 747-821 (1189)
212 PF04840 Vps16_C: Vps16, C-ter 97.1 0.21 4.6E-06 45.2 28.3 110 357-486 178-287 (319)
213 PF03704 BTAD: Bacterial trans 97.0 0.011 2.4E-07 47.0 10.7 72 393-465 64-140 (146)
214 PF12921 ATP13: Mitochondrial 96.9 0.019 4E-07 43.8 10.3 98 143-261 1-99 (126)
215 PRK15331 chaperone protein Sic 96.9 0.11 2.5E-06 41.0 14.5 89 187-278 45-133 (165)
216 PF12921 ATP13: Mitochondrial 96.9 0.033 7.1E-07 42.4 11.3 56 244-299 46-101 (126)
217 COG4105 ComL DNA uptake lipopr 96.8 0.27 5.8E-06 42.0 22.0 80 111-190 37-117 (254)
218 PF13371 TPR_9: Tetratricopept 96.8 0.0066 1.4E-07 41.4 6.8 53 154-207 5-57 (73)
219 KOG1538 Uncharacterized conser 96.7 0.17 3.6E-06 48.7 16.6 51 324-383 750-800 (1081)
220 PF09205 DUF1955: Domain of un 96.7 0.18 3.9E-06 37.9 13.5 31 426-456 120-150 (161)
221 PF13424 TPR_12: Tetratricopep 96.6 0.0086 1.9E-07 41.5 6.4 62 393-454 7-74 (78)
222 COG3118 Thioredoxin domain-con 96.6 0.4 8.8E-06 41.8 17.7 167 90-264 118-286 (304)
223 PF10300 DUF3808: Protein of u 96.6 0.3 6.5E-06 47.2 18.4 170 324-496 191-382 (468)
224 KOG2796 Uncharacterized conser 96.6 0.4 8.7E-06 40.9 24.9 133 323-456 179-316 (366)
225 PF04053 Coatomer_WDAD: Coatom 96.6 0.14 3.1E-06 48.6 15.7 160 115-311 268-427 (443)
226 KOG3941 Intermediate in Toll s 96.5 0.084 1.8E-06 45.3 12.5 75 130-205 94-185 (406)
227 PF07079 DUF1347: Protein of u 96.4 0.75 1.6E-05 42.6 37.1 81 407-489 437-523 (549)
228 KOG4555 TPR repeat-containing 96.4 0.099 2.1E-06 39.1 10.7 91 365-456 52-145 (175)
229 COG1729 Uncharacterized protei 96.4 0.13 2.8E-06 44.2 12.9 102 393-495 144-249 (262)
230 PF13281 DUF4071: Domain of un 96.4 0.82 1.8E-05 42.0 22.7 169 144-315 141-334 (374)
231 PF13428 TPR_14: Tetratricopep 96.3 0.0046 1E-07 37.1 3.1 36 463-498 3-38 (44)
232 KOG0543 FKBP-type peptidyl-pro 96.3 0.16 3.4E-06 46.2 13.6 94 288-383 259-353 (397)
233 KOG1941 Acetylcholine receptor 96.3 0.18 3.8E-06 45.0 13.5 47 226-272 17-65 (518)
234 KOG2066 Vacuolar assembly/sort 96.3 1.3 2.9E-05 43.9 24.5 99 118-227 366-467 (846)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.026 5.6E-07 52.3 8.8 97 389-491 73-175 (453)
236 smart00299 CLH Clathrin heavy 96.3 0.4 8.6E-06 37.6 14.7 62 396-472 74-136 (140)
237 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.091 2E-06 48.8 12.1 67 318-385 72-141 (453)
238 PF04053 Coatomer_WDAD: Coatom 96.2 0.23 4.9E-06 47.3 15.1 130 287-449 296-425 (443)
239 COG3118 Thioredoxin domain-con 96.2 0.76 1.6E-05 40.2 18.1 145 152-300 142-286 (304)
240 KOG0543 FKBP-type peptidyl-pro 96.2 0.17 3.7E-06 46.0 13.1 129 111-242 211-353 (397)
241 KOG1538 Uncharacterized conser 96.1 0.63 1.4E-05 45.0 17.1 88 392-490 748-846 (1081)
242 COG0457 NrfG FOG: TPR repeat [ 96.1 0.78 1.7E-05 39.4 29.9 224 229-454 37-264 (291)
243 COG4105 ComL DNA uptake lipopr 96.0 0.84 1.8E-05 39.1 21.5 179 295-493 43-236 (254)
244 KOG1941 Acetylcholine receptor 96.0 1.1 2.3E-05 40.3 18.1 124 292-416 128-271 (518)
245 COG1729 Uncharacterized protei 96.0 0.19 4.1E-06 43.2 11.9 88 118-207 151-243 (262)
246 PF13176 TPR_7: Tetratricopept 95.9 0.018 4E-07 32.6 4.1 31 463-493 1-31 (36)
247 PF08631 SPO22: Meiosis protei 95.9 1.2 2.5E-05 39.9 27.2 164 323-489 86-274 (278)
248 PF04184 ST7: ST7 protein; In 95.9 1.2 2.7E-05 41.9 17.5 60 395-454 263-323 (539)
249 PF13170 DUF4003: Protein of u 95.9 1.2 2.7E-05 39.9 18.3 132 303-436 79-227 (297)
250 PF13512 TPR_18: Tetratricopep 95.9 0.23 4.9E-06 38.4 10.8 82 111-192 13-95 (142)
251 KOG1258 mRNA processing protei 95.8 1.9 4.1E-05 41.6 32.1 86 120-207 91-179 (577)
252 KOG2610 Uncharacterized conser 95.8 0.35 7.5E-06 42.7 12.7 151 121-275 116-272 (491)
253 PF04184 ST7: ST7 protein; In 95.8 1.6 3.4E-05 41.3 17.5 169 114-299 174-344 (539)
254 PF02259 FAT: FAT domain; Int 95.7 1.7 3.8E-05 40.4 20.9 65 355-419 145-212 (352)
255 KOG3941 Intermediate in Toll s 95.7 0.12 2.7E-06 44.3 9.5 103 355-476 66-173 (406)
256 smart00299 CLH Clathrin heavy 95.7 0.78 1.7E-05 36.0 15.8 83 114-205 13-95 (140)
257 PF08631 SPO22: Meiosis protei 95.6 1.5 3.3E-05 39.1 26.7 124 119-244 4-150 (278)
258 KOG2610 Uncharacterized conser 95.6 0.42 9E-06 42.3 12.7 155 297-454 114-275 (491)
259 KOG1920 IkappaB kinase complex 95.6 3.6 7.7E-05 43.2 28.6 130 109-243 678-820 (1265)
260 PF13512 TPR_18: Tetratricopep 95.6 0.49 1.1E-05 36.6 11.7 55 366-420 20-76 (142)
261 PRK11906 transcriptional regul 95.6 2 4.4E-05 40.3 17.7 79 374-454 322-400 (458)
262 KOG1585 Protein required for f 95.5 1.3 2.8E-05 37.5 17.0 54 289-343 193-249 (308)
263 COG2976 Uncharacterized protei 95.3 1.3 2.9E-05 36.1 13.4 93 397-491 95-189 (207)
264 COG4649 Uncharacterized protei 95.2 1.2 2.7E-05 35.4 14.3 137 144-281 59-198 (221)
265 PF00515 TPR_1: Tetratricopept 95.2 0.056 1.2E-06 30.0 4.3 32 462-493 2-33 (34)
266 KOG4555 TPR repeat-containing 95.2 0.93 2E-05 34.1 11.5 92 115-208 50-144 (175)
267 KOG1585 Protein required for f 95.2 1.7 3.7E-05 36.8 18.3 208 144-379 31-250 (308)
268 PF10300 DUF3808: Protein of u 95.1 3.4 7.5E-05 40.0 23.6 176 128-313 177-374 (468)
269 PRK11906 transcriptional regul 95.1 2.5 5.3E-05 39.8 16.6 149 159-311 273-432 (458)
270 PF13428 TPR_14: Tetratricopep 95.1 0.09 2E-06 31.4 5.2 39 428-467 3-41 (44)
271 PF07719 TPR_2: Tetratricopept 94.9 0.075 1.6E-06 29.4 4.4 32 462-493 2-33 (34)
272 COG5107 RNA14 Pre-mRNA 3'-end 94.8 3.5 7.6E-05 38.4 32.1 87 97-187 31-117 (660)
273 KOG2114 Vacuolar assembly/sort 94.8 3.8 8.1E-05 41.3 17.5 173 219-415 338-514 (933)
274 PF13929 mRNA_stabil: mRNA sta 94.7 2 4.3E-05 37.7 14.1 140 157-296 141-288 (292)
275 KOG2280 Vacuolar assembly/sort 94.5 5.7 0.00012 39.6 30.7 324 153-490 398-773 (829)
276 KOG1550 Extracellular protein 94.4 6 0.00013 39.4 24.3 180 124-316 228-427 (552)
277 PF09205 DUF1955: Domain of un 94.3 1.7 3.7E-05 32.9 13.7 62 325-387 90-151 (161)
278 COG3629 DnrI DNA-binding trans 94.3 0.67 1.5E-05 40.6 10.6 76 394-470 156-236 (280)
279 KOG1550 Extracellular protein 93.9 7.5 0.00016 38.8 21.8 47 227-276 261-319 (552)
280 COG3629 DnrI DNA-binding trans 93.8 1.9 4.1E-05 37.9 12.3 81 144-225 153-237 (280)
281 PF07035 Mic1: Colon cancer-as 93.8 2.9 6.4E-05 33.6 15.2 133 165-313 15-147 (167)
282 KOG1920 IkappaB kinase complex 93.7 11 0.00024 39.9 21.3 79 292-381 971-1051(1265)
283 COG4649 Uncharacterized protei 93.6 3.1 6.7E-05 33.3 16.2 122 191-314 70-195 (221)
284 COG0457 NrfG FOG: TPR repeat [ 93.5 4.3 9.4E-05 34.6 30.2 124 295-420 139-265 (291)
285 KOG1258 mRNA processing protei 93.4 8 0.00017 37.5 26.3 332 123-482 60-421 (577)
286 PF13181 TPR_8: Tetratricopept 93.1 0.29 6.3E-06 27.0 4.3 31 462-492 2-32 (34)
287 PF13170 DUF4003: Protein of u 93.1 6.5 0.00014 35.4 21.8 133 266-401 78-227 (297)
288 PF04097 Nic96: Nup93/Nic96; 93.0 11 0.00025 38.0 20.2 58 114-173 117-181 (613)
289 PF07079 DUF1347: Protein of u 92.9 8.2 0.00018 36.2 34.9 336 119-467 90-531 (549)
290 PF13176 TPR_7: Tetratricopept 92.8 0.31 6.6E-06 27.5 4.2 26 428-453 1-26 (36)
291 PF10602 RPN7: 26S proteasome 92.6 2.3 4.9E-05 34.9 10.6 95 357-453 37-140 (177)
292 KOG4570 Uncharacterized conser 92.6 2.3 5.1E-05 37.5 10.7 48 371-418 115-162 (418)
293 PF10602 RPN7: 26S proteasome 92.3 2.8 6E-05 34.4 10.7 98 392-489 37-141 (177)
294 KOG0276 Vesicle coat complex C 92.1 2.2 4.8E-05 41.1 10.9 149 191-381 598-746 (794)
295 PRK15180 Vi polysaccharide bio 91.9 1.7 3.7E-05 40.6 9.8 90 402-493 334-423 (831)
296 KOG4570 Uncharacterized conser 91.9 2.3 4.9E-05 37.5 9.9 104 245-350 59-164 (418)
297 PF09613 HrpB1_HrpK: Bacterial 91.8 5.5 0.00012 31.6 14.0 50 156-207 22-72 (160)
298 PF09613 HrpB1_HrpK: Bacterial 91.8 5.6 0.00012 31.6 14.1 94 109-207 11-105 (160)
299 PF13431 TPR_17: Tetratricopep 91.8 0.26 5.7E-06 27.4 2.9 20 461-480 13-32 (34)
300 COG1747 Uncharacterized N-term 91.7 13 0.00027 35.6 26.7 183 140-331 62-249 (711)
301 KOG2114 Vacuolar assembly/sort 91.7 17 0.00037 37.0 28.2 56 431-490 710-765 (933)
302 PF13174 TPR_6: Tetratricopept 91.7 0.33 7.2E-06 26.4 3.4 28 466-493 5-32 (33)
303 PF13374 TPR_10: Tetratricopep 91.6 0.5 1.1E-05 27.5 4.3 31 461-491 2-32 (42)
304 PF13431 TPR_17: Tetratricopep 91.4 0.26 5.5E-06 27.4 2.7 24 141-164 10-33 (34)
305 PF02284 COX5A: Cytochrome c o 91.2 4.2 9.2E-05 29.2 9.0 41 414-454 33-73 (108)
306 COG4785 NlpI Lipoprotein NlpI, 91.2 8.1 0.00017 32.3 17.3 64 179-244 99-162 (297)
307 KOG2063 Vacuolar assembly/sort 91.1 19 0.00041 37.5 17.0 115 288-402 506-637 (877)
308 KOG0276 Vesicle coat complex C 91.1 4.3 9.3E-05 39.3 11.6 150 262-452 598-747 (794)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 91.0 1.7 3.7E-05 30.8 6.8 61 160-222 23-83 (103)
310 KOG4234 TPR repeat-containing 90.6 3.9 8.5E-05 33.6 9.5 91 364-456 103-198 (271)
311 COG1747 Uncharacterized N-term 90.6 16 0.00036 34.9 25.7 180 176-366 63-249 (711)
312 PF02259 FAT: FAT domain; Int 89.9 16 0.00036 33.8 24.8 65 285-349 145-212 (352)
313 PRK09687 putative lyase; Provi 89.8 14 0.00031 33.0 30.6 234 141-401 34-277 (280)
314 PF02284 COX5A: Cytochrome c o 89.6 3.2 6.9E-05 29.8 7.3 60 374-434 28-87 (108)
315 PF04097 Nic96: Nup93/Nic96; 89.6 25 0.00055 35.6 17.7 43 184-228 116-158 (613)
316 PRK15180 Vi polysaccharide bio 89.6 19 0.00041 34.1 14.5 125 258-386 297-421 (831)
317 PF00515 TPR_1: Tetratricopept 89.5 1.1 2.3E-05 24.6 4.2 27 428-454 3-29 (34)
318 COG4455 ImpE Protein of avirul 89.4 3 6.6E-05 34.7 8.1 77 110-188 3-81 (273)
319 PF07035 Mic1: Colon cancer-as 89.3 10 0.00022 30.6 15.9 31 308-338 16-46 (167)
320 COG4785 NlpI Lipoprotein NlpI, 89.2 12 0.00026 31.4 14.9 179 122-315 79-266 (297)
321 PRK11619 lytic murein transgly 89.2 28 0.0006 35.5 33.6 275 90-383 81-373 (644)
322 TIGR02561 HrpB1_HrpK type III 88.9 9.7 0.00021 29.8 12.6 51 156-208 22-73 (153)
323 KOG0890 Protein kinase of the 88.5 55 0.0012 38.0 25.8 321 149-491 1388-1732(2382)
324 PF13374 TPR_10: Tetratricopep 88.1 1.5 3.2E-05 25.4 4.4 28 427-454 3-30 (42)
325 PF11207 DUF2989: Protein of u 87.6 8.2 0.00018 32.0 9.5 79 155-235 118-198 (203)
326 PF07719 TPR_2: Tetratricopept 87.2 2.1 4.5E-05 23.3 4.4 26 147-172 4-29 (34)
327 PF11207 DUF2989: Protein of u 86.8 12 0.00026 31.0 10.1 78 190-270 118-198 (203)
328 PF00637 Clathrin: Region in C 86.6 0.2 4.4E-06 39.5 -0.0 86 361-453 12-97 (143)
329 COG3947 Response regulator con 86.5 8.7 0.00019 33.7 9.4 59 146-205 281-339 (361)
330 COG4455 ImpE Protein of avirul 86.1 18 0.00039 30.4 10.6 133 360-499 5-143 (273)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 86.0 10 0.00023 27.0 9.7 45 374-418 25-69 (103)
332 TIGR02561 HrpB1_HrpK type III 85.8 15 0.00033 28.8 12.1 63 109-174 11-74 (153)
333 KOG1464 COP9 signalosome, subu 85.5 24 0.00052 30.7 18.8 203 211-414 22-254 (440)
334 KOG2297 Predicted translation 85.4 26 0.00057 31.1 18.9 17 428-444 323-339 (412)
335 COG2909 MalT ATP-dependent tra 85.3 49 0.0011 34.2 27.6 271 111-381 363-684 (894)
336 COG3947 Response regulator con 85.2 26 0.00056 31.0 16.1 60 393-453 281-340 (361)
337 PF13929 mRNA_stabil: mRNA sta 84.9 27 0.00059 30.9 18.3 115 195-309 144-261 (292)
338 COG2976 Uncharacterized protei 84.5 21 0.00047 29.4 13.0 87 294-385 97-188 (207)
339 KOG2168 Cullins [Cell cycle co 84.5 36 0.00077 35.0 13.9 24 149-172 330-353 (835)
340 PF13181 TPR_8: Tetratricopept 83.4 3.9 8.5E-05 22.2 4.4 27 428-454 3-29 (34)
341 COG5159 RPN6 26S proteasome re 83.4 31 0.00067 30.4 11.7 25 466-490 130-154 (421)
342 PF13174 TPR_6: Tetratricopept 83.3 2.4 5.3E-05 22.8 3.5 20 152-171 8-27 (33)
343 PF07721 TPR_4: Tetratricopept 82.5 1.8 3.8E-05 22.2 2.4 19 466-484 6-24 (26)
344 KOG1464 COP9 signalosome, subu 82.5 32 0.0007 29.9 23.0 50 157-206 40-92 (440)
345 smart00028 TPR Tetratricopepti 82.2 2.3 5E-05 22.2 3.2 27 464-490 4-30 (34)
346 KOG4648 Uncharacterized conser 82.1 11 0.00024 33.9 8.4 95 111-208 100-194 (536)
347 KOG4648 Uncharacterized conser 81.5 4.9 0.00011 36.0 6.1 93 363-460 104-197 (536)
348 PF00637 Clathrin: Region in C 81.4 0.68 1.5E-05 36.5 0.9 130 326-477 12-141 (143)
349 TIGR03504 FimV_Cterm FimV C-te 81.1 2.6 5.7E-05 25.0 3.1 23 467-489 5-27 (44)
350 PF07163 Pex26: Pex26 protein; 80.0 41 0.0009 29.6 13.1 88 292-379 89-181 (309)
351 TIGR03504 FimV_Cterm FimV C-te 80.0 4.9 0.00011 23.9 4.0 24 432-455 5-28 (44)
352 KOG2396 HAT (Half-A-TPR) repea 79.8 60 0.0013 31.3 35.4 81 125-208 88-169 (568)
353 PF10579 Rapsyn_N: Rapsyn N-te 79.7 8.8 0.00019 26.2 5.5 54 111-165 10-64 (80)
354 KOG0890 Protein kinase of the 79.3 1.4E+02 0.003 35.2 30.7 353 117-494 1392-1788(2382)
355 PF07575 Nucleopor_Nup85: Nup8 79.2 74 0.0016 32.0 17.0 28 355-382 404-431 (566)
356 KOG2063 Vacuolar assembly/sort 79.2 80 0.0017 33.2 14.5 117 252-368 506-638 (877)
357 PF06552 TOM20_plant: Plant sp 79.2 22 0.00047 29.0 8.5 109 124-245 7-137 (186)
358 KOG4077 Cytochrome c oxidase, 78.4 18 0.0004 27.2 7.3 44 375-418 68-111 (149)
359 KOG4234 TPR repeat-containing 77.9 39 0.00085 28.1 13.4 97 109-208 96-197 (271)
360 KOG4077 Cytochrome c oxidase, 77.5 17 0.00037 27.4 6.9 45 163-207 68-112 (149)
361 PF12862 Apc5: Anaphase-promot 76.8 18 0.00039 25.8 7.1 21 470-490 50-70 (94)
362 PRK09687 putative lyase; Provi 76.8 56 0.0012 29.3 29.7 137 320-472 141-278 (280)
363 PF11846 DUF3366: Domain of un 76.8 13 0.00029 31.0 7.3 35 458-492 141-175 (193)
364 PF11817 Foie-gras_1: Foie gra 76.6 21 0.00045 31.3 8.7 60 146-205 180-244 (247)
365 PF06552 TOM20_plant: Plant sp 76.5 40 0.00087 27.5 11.3 41 372-420 96-136 (186)
366 KOG1586 Protein required for f 74.8 54 0.0012 28.1 18.3 27 399-425 162-188 (288)
367 TIGR02508 type_III_yscG type I 74.7 29 0.00063 25.0 8.4 51 259-316 48-98 (115)
368 COG2909 MalT ATP-dependent tra 74.6 1.1E+02 0.0025 31.8 29.3 226 187-416 423-684 (894)
369 COG0790 FOG: TPR repeat, SEL1 74.2 66 0.0014 28.9 21.9 85 262-353 53-145 (292)
370 PF14689 SPOB_a: Sensor_kinase 73.3 9.7 0.00021 24.7 4.4 48 442-491 6-53 (62)
371 PF14853 Fis1_TPR_C: Fis1 C-te 73.0 11 0.00024 23.5 4.4 33 431-465 6-38 (53)
372 PF11848 DUF3368: Domain of un 72.8 18 0.0004 21.9 5.2 34 436-469 12-45 (48)
373 KOG2034 Vacuolar sorting prote 72.7 1.3E+02 0.0027 31.5 29.3 51 114-171 364-416 (911)
374 KOG2471 TPR repeat-containing 72.6 94 0.002 29.9 16.1 107 331-438 250-381 (696)
375 PF10579 Rapsyn_N: Rapsyn N-te 71.9 25 0.00053 24.1 6.0 48 438-485 18-67 (80)
376 PF10345 Cohesin_load: Cohesin 70.9 1.3E+02 0.0028 30.7 35.9 366 125-491 38-524 (608)
377 KOG4642 Chaperone-dependent E3 70.2 71 0.0015 27.5 10.8 119 330-452 19-143 (284)
378 PF09986 DUF2225: Uncharacteri 69.8 56 0.0012 27.8 9.4 25 466-490 170-194 (214)
379 PF13762 MNE1: Mitochondrial s 69.2 54 0.0012 25.8 10.7 79 325-403 43-127 (145)
380 PF13934 ELYS: Nuclear pore co 69.2 60 0.0013 27.9 9.6 21 185-205 114-134 (226)
381 PF09670 Cas_Cas02710: CRISPR- 69.0 86 0.0019 29.6 11.3 53 331-384 141-197 (379)
382 PF08424 NRDE-2: NRDE-2, neces 68.8 96 0.0021 28.5 18.5 98 318-417 16-128 (321)
383 KOG0687 26S proteasome regulat 68.6 92 0.002 28.2 14.5 136 175-314 66-209 (393)
384 PRK10941 hypothetical protein; 68.5 86 0.0019 27.8 10.8 55 151-206 188-242 (269)
385 KOG3807 Predicted membrane pro 68.1 42 0.00092 30.2 8.3 57 220-276 280-337 (556)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 67.3 54 0.0012 25.1 9.5 44 444-487 81-125 (126)
387 PF11848 DUF3368: Domain of un 67.0 26 0.00056 21.3 5.1 34 154-187 12-45 (48)
388 KOG4642 Chaperone-dependent E3 67.0 55 0.0012 28.2 8.4 118 366-487 20-143 (284)
389 PF14689 SPOB_a: Sensor_kinase 66.9 14 0.00031 23.9 4.1 21 185-205 29-49 (62)
390 COG4259 Uncharacterized protei 66.4 24 0.00052 25.3 5.3 50 444-493 55-104 (121)
391 TIGR02508 type_III_yscG type I 64.7 51 0.0011 23.9 9.7 79 122-208 19-97 (115)
392 KOG0991 Replication factor C, 64.7 92 0.002 26.8 13.3 43 234-278 178-220 (333)
393 KOG0686 COP9 signalosome, subu 64.6 1.3E+02 0.0027 28.3 15.4 64 251-314 151-215 (466)
394 PF11846 DUF3366: Domain of un 64.6 46 0.00099 27.7 8.0 31 283-313 141-171 (193)
395 PRK11619 lytic murein transgly 63.7 1.8E+02 0.0039 29.8 33.7 312 116-453 41-373 (644)
396 PF09477 Type_III_YscG: Bacter 63.7 56 0.0012 24.0 10.9 81 120-208 18-98 (116)
397 KOG0687 26S proteasome regulat 63.5 1.2E+02 0.0025 27.6 14.7 23 289-311 107-129 (393)
398 COG0735 Fur Fe2+/Zn2+ uptake r 63.4 46 0.00099 26.2 7.2 45 379-424 9-53 (145)
399 PF04910 Tcf25: Transcriptiona 62.9 1.3E+02 0.0029 28.1 17.0 95 397-493 109-225 (360)
400 PRK10941 hypothetical protein; 61.5 1.2E+02 0.0026 27.0 11.0 59 220-279 186-244 (269)
401 PF12862 Apc5: Anaphase-promot 61.1 57 0.0012 23.2 7.3 21 258-278 49-69 (94)
402 COG0735 Fur Fe2+/Zn2+ uptake r 61.0 65 0.0014 25.4 7.7 63 343-406 8-70 (145)
403 PF04910 Tcf25: Transcriptiona 60.9 1.5E+02 0.0032 27.8 21.4 98 285-382 39-165 (360)
404 smart00386 HAT HAT (Half-A-TPR 60.3 4.1 8.9E-05 21.7 0.7 15 441-455 2-16 (33)
405 COG5187 RPN7 26S proteasome re 59.7 1.3E+02 0.0028 26.8 13.3 100 213-314 113-220 (412)
406 KOG1114 Tripeptidyl peptidase 59.5 2.4E+02 0.0053 29.9 14.3 81 373-454 1213-1294(1304)
407 PRK13184 pknD serine/threonine 59.4 2.6E+02 0.0056 30.2 27.7 325 116-454 483-868 (932)
408 PF13762 MNE1: Mitochondrial s 58.6 89 0.0019 24.6 12.7 48 216-263 80-128 (145)
409 PF10345 Cohesin_load: Cohesin 58.6 2.2E+02 0.0047 29.1 33.3 51 439-489 547-605 (608)
410 KOG3364 Membrane protein invol 58.5 85 0.0018 24.3 8.8 68 388-455 29-100 (149)
411 cd00280 TRFH Telomeric Repeat 58.5 91 0.002 25.6 7.9 47 160-207 85-139 (200)
412 PF09454 Vps23_core: Vps23 cor 58.1 32 0.00068 22.6 4.5 51 141-192 5-55 (65)
413 cd08819 CARD_MDA5_2 Caspase ac 57.9 63 0.0014 22.7 7.7 64 164-234 22-85 (88)
414 PF11817 Foie-gras_1: Foie gra 57.6 67 0.0015 28.1 8.0 57 220-276 183-244 (247)
415 PRK10564 maltose regulon perip 56.5 33 0.00071 30.6 5.7 42 141-182 253-295 (303)
416 COG0790 FOG: TPR repeat, SEL1 56.5 1.5E+02 0.0032 26.6 22.8 99 227-332 53-159 (292)
417 PF07064 RIC1: RIC1; InterPro 56.4 1.4E+02 0.0031 26.3 14.8 28 109-136 83-110 (258)
418 smart00804 TAP_C C-terminal do 56.1 11 0.00025 24.5 2.2 25 121-145 38-62 (63)
419 PRK10564 maltose regulon perip 54.8 33 0.00071 30.6 5.4 29 395-423 261-289 (303)
420 KOG4521 Nuclear pore complex, 54.5 3.1E+02 0.0068 29.9 12.7 57 253-309 986-1044(1480)
421 PRK14956 DNA polymerase III su 53.8 2.3E+02 0.0049 27.8 12.8 44 268-313 184-227 (484)
422 COG5159 RPN6 26S proteasome re 53.7 1.6E+02 0.0035 26.2 15.4 123 256-379 9-148 (421)
423 cd08819 CARD_MDA5_2 Caspase ac 53.7 76 0.0016 22.3 6.9 67 126-199 20-86 (88)
424 KOG0376 Serine-threonine phosp 53.6 43 0.00093 31.9 6.3 108 113-227 9-117 (476)
425 PF11838 ERAP1_C: ERAP1-like C 53.3 1.8E+02 0.0039 26.5 22.6 80 303-385 147-230 (324)
426 KOG1308 Hsp70-interacting prot 52.9 22 0.00047 32.2 4.1 88 117-208 123-211 (377)
427 KOG2066 Vacuolar assembly/sort 52.8 2.8E+02 0.0061 28.7 22.9 102 151-262 363-467 (846)
428 KOG4507 Uncharacterized conser 52.7 88 0.0019 30.9 8.1 97 335-433 621-717 (886)
429 KOG4507 Uncharacterized conser 52.6 1.5E+02 0.0033 29.3 9.7 101 296-398 617-717 (886)
430 PF14669 Asp_Glu_race_2: Putat 52.4 1.4E+02 0.0029 24.9 14.6 25 326-350 137-161 (233)
431 PF09868 DUF2095: Uncharacteri 52.4 69 0.0015 23.7 5.7 41 149-190 66-106 (128)
432 KOG2908 26S proteasome regulat 51.8 1.9E+02 0.0042 26.4 10.6 90 393-482 77-178 (380)
433 KOG2659 LisH motif-containing 51.7 1.5E+02 0.0033 25.3 10.0 65 140-206 22-91 (228)
434 COG4976 Predicted methyltransf 51.6 29 0.00063 29.5 4.4 53 402-455 6-58 (287)
435 KOG0686 COP9 signalosome, subu 51.5 2.2E+02 0.0047 26.9 14.5 93 180-276 151-255 (466)
436 PF07163 Pex26: Pex26 protein; 50.5 1.8E+02 0.004 25.8 14.4 88 150-238 89-181 (309)
437 PF10366 Vps39_1: Vacuolar sor 50.4 1E+02 0.0022 22.8 6.9 27 428-454 41-67 (108)
438 KOG0991 Replication factor C, 49.9 1.7E+02 0.0037 25.3 16.1 91 331-424 169-271 (333)
439 KOG1839 Uncharacterized protei 49.5 3.9E+02 0.0085 29.6 12.9 161 331-491 942-1129(1236)
440 PF09670 Cas_Cas02710: CRISPR- 49.5 2.3E+02 0.0051 26.7 13.8 58 114-173 137-198 (379)
441 KOG4567 GTPase-activating prot 49.3 1.3E+02 0.0028 27.1 8.0 43 271-314 264-306 (370)
442 PRK11639 zinc uptake transcrip 48.8 1.3E+02 0.0028 24.4 7.8 60 347-407 17-76 (169)
443 KOG1308 Hsp70-interacting prot 48.3 15 0.00032 33.2 2.3 88 261-352 125-213 (377)
444 COG5108 RPO41 Mitochondrial DN 47.9 1.8E+02 0.0039 29.3 9.5 91 184-277 33-130 (1117)
445 PF11768 DUF3312: Protein of u 47.9 2.9E+02 0.0063 27.3 11.1 57 113-172 413-472 (545)
446 PF08424 NRDE-2: NRDE-2, neces 47.7 2.3E+02 0.0049 26.1 20.9 79 160-241 47-128 (321)
447 PF04090 RNA_pol_I_TF: RNA pol 47.7 1.5E+02 0.0033 24.8 7.9 67 426-492 41-107 (199)
448 PF11663 Toxin_YhaV: Toxin wit 47.6 21 0.00045 27.4 2.7 33 437-471 106-138 (140)
449 PF00244 14-3-3: 14-3-3 protei 47.6 1.9E+02 0.0041 25.1 12.3 59 291-349 6-65 (236)
450 KOG0376 Serine-threonine phosp 47.4 57 0.0012 31.1 6.1 52 260-314 14-66 (476)
451 PRK13342 recombination factor 47.4 2.7E+02 0.0057 26.8 20.2 24 370-393 244-267 (413)
452 KOG2471 TPR repeat-containing 47.4 2.8E+02 0.006 27.0 14.8 41 191-232 29-69 (696)
453 KOG2422 Uncharacterized conser 47.2 3E+02 0.0066 27.4 18.3 30 460-489 482-515 (665)
454 PF00244 14-3-3: 14-3-3 protei 47.0 1.9E+02 0.0042 25.1 11.0 60 254-314 5-65 (236)
455 PF10255 Paf67: RNA polymerase 46.7 2.7E+02 0.0057 26.6 12.0 27 426-452 164-190 (404)
456 KOG2062 26S proteasome regulat 46.6 3.5E+02 0.0076 27.9 18.0 88 261-349 512-599 (929)
457 KOG4567 GTPase-activating prot 46.6 1.3E+02 0.0029 27.0 7.7 57 376-437 263-319 (370)
458 KOG1839 Uncharacterized protei 46.3 3.3E+02 0.0072 30.1 11.8 157 294-450 940-1123(1236)
459 PF11768 DUF3312: Protein of u 46.3 3.1E+02 0.0066 27.2 11.4 25 183-207 412-436 (545)
460 PLN02673 quinolinate synthetas 46.3 97 0.0021 31.3 7.6 18 12-29 12-29 (724)
461 PRK11639 zinc uptake transcrip 46.2 1.3E+02 0.0027 24.5 7.3 63 381-444 16-78 (169)
462 PF06957 COPI_C: Coatomer (COP 45.8 2.8E+02 0.0061 26.6 10.6 48 412-459 284-333 (422)
463 KOG1114 Tripeptidyl peptidase 45.5 4.1E+02 0.0089 28.4 17.0 70 267-337 1213-1283(1304)
464 PF11663 Toxin_YhaV: Toxin wit 44.8 27 0.00058 26.8 2.9 29 299-329 108-136 (140)
465 PF11123 DNA_Packaging_2: DNA 44.0 98 0.0021 20.8 5.1 32 122-155 11-42 (82)
466 PF02184 HAT: HAT (Half-A-TPR) 43.9 55 0.0012 17.9 3.4 25 441-467 2-26 (32)
467 COG4003 Uncharacterized protei 43.7 1.1E+02 0.0023 21.1 5.3 34 149-183 36-69 (98)
468 PF09454 Vps23_core: Vps23 cor 43.5 75 0.0016 20.9 4.5 50 424-474 6-55 (65)
469 PF10475 DUF2450: Protein of u 43.3 2.5E+02 0.0054 25.3 10.6 114 292-416 104-222 (291)
470 PF10366 Vps39_1: Vacuolar sor 43.1 1.3E+02 0.0029 22.2 6.4 27 146-172 41-67 (108)
471 PF09477 Type_III_YscG: Bacter 43.1 1.3E+02 0.0029 22.1 10.1 80 158-245 20-99 (116)
472 PRK09857 putative transposase; 42.7 2.4E+02 0.0052 25.5 9.2 64 396-460 211-274 (292)
473 PF07575 Nucleopor_Nup85: Nup8 42.6 56 0.0012 32.9 5.8 23 300-322 509-531 (566)
474 cd07153 Fur_like Ferric uptake 42.5 81 0.0018 23.5 5.5 47 362-408 6-52 (116)
475 PF14669 Asp_Glu_race_2: Putat 42.3 2E+02 0.0044 23.9 15.9 55 396-450 137-205 (233)
476 KOG0292 Vesicle coat complex C 42.2 2.4E+02 0.0053 29.6 9.6 131 153-315 652-782 (1202)
477 PF02847 MA3: MA3 domain; Int 42.1 1.4E+02 0.003 22.0 7.1 22 291-312 7-28 (113)
478 KOG2659 LisH motif-containing 41.9 2.2E+02 0.0049 24.4 9.5 64 176-242 23-91 (228)
479 PF08311 Mad3_BUB1_I: Mad3/BUB 41.8 1.6E+02 0.0034 22.5 10.2 43 162-204 81-124 (126)
480 KOG2422 Uncharacterized conser 41.7 3.7E+02 0.008 26.8 16.9 51 402-452 353-404 (665)
481 PRK09462 fur ferric uptake reg 41.2 1.5E+02 0.0034 23.3 7.0 63 380-443 6-69 (148)
482 PF01475 FUR: Ferric uptake re 41.0 71 0.0015 24.0 5.0 47 360-406 11-57 (120)
483 PRK08691 DNA polymerase III su 40.5 4.4E+02 0.0095 27.3 13.5 18 335-352 259-276 (709)
484 KOG0545 Aryl-hydrocarbon recep 40.5 2.5E+02 0.0054 24.5 8.9 89 296-386 188-294 (329)
485 cd07153 Fur_like Ferric uptake 40.5 71 0.0015 23.8 4.9 47 397-443 6-52 (116)
486 COG5191 Uncharacterized conser 40.2 39 0.00085 30.2 3.6 65 390-455 106-171 (435)
487 PF04762 IKI3: IKI3 family; I 39.7 5.3E+02 0.012 28.0 18.7 27 109-135 695-721 (928)
488 KOG3677 RNA polymerase I-assoc 39.5 3.4E+02 0.0074 25.8 10.4 60 146-205 237-298 (525)
489 KOG4814 Uncharacterized conser 39.4 4.2E+02 0.0092 26.8 12.9 89 116-207 362-456 (872)
490 PF09986 DUF2225: Uncharacteri 39.2 2.4E+02 0.0053 24.0 12.3 26 290-315 169-194 (214)
491 PF05944 Phage_term_smal: Phag 38.9 76 0.0016 24.5 4.7 30 429-458 51-80 (132)
492 PF01475 FUR: Ferric uptake re 38.2 60 0.0013 24.4 4.2 46 431-476 12-57 (120)
493 PF12926 MOZART2: Mitotic-spin 38.2 1.4E+02 0.0031 20.9 7.9 63 423-487 7-69 (88)
494 KOG4814 Uncharacterized conser 38.1 2.9E+02 0.0063 27.9 9.2 86 296-383 364-455 (872)
495 PRK07003 DNA polymerase III su 37.4 5.2E+02 0.011 27.3 16.4 19 335-353 259-277 (830)
496 COG4941 Predicted RNA polymera 37.1 3.4E+02 0.0073 25.0 11.6 116 372-490 272-394 (415)
497 COG5108 RPO41 Mitochondrial DN 37.0 2.9E+02 0.0063 28.0 9.1 78 111-191 31-115 (1117)
498 PRK09462 fur ferric uptake reg 36.5 2.1E+02 0.0046 22.5 7.9 61 346-407 7-68 (148)
499 KOG4279 Serine/threonine prote 36.5 5.1E+02 0.011 26.9 17.0 119 269-392 182-321 (1226)
500 PRK13342 recombination factor 36.4 3.9E+02 0.0085 25.6 20.0 154 318-490 173-334 (413)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-59 Score=472.75 Aligned_cols=374 Identities=21% Similarity=0.322 Sum_probs=354.1
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
+..+.+.|..++|+.+|+.|. .||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~ 487 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC
Confidence 344445555555555555443 278899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (502)
+++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 488 vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 488 VDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999986 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 010740 275 GMLES-ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP 353 (502)
Q Consensus 275 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (502)
+|... .++.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 99753 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 010740 354 WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVI 433 (502)
Q Consensus 354 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 433 (502)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 434 SACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..+
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999976544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-58 Score=466.96 Aligned_cols=384 Identities=19% Similarity=0.281 Sum_probs=366.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA 187 (502)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (502)
..++..++..|++.|++++|.++|+.|.+.| +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3667789999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhccCC
Q 010740 188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDE--RSVTPNTVTQNIVLGGYGKAGM 265 (502)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g~ 265 (502)
+|++.|++++|+++|++|.+. |+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999986 8999999999999999999999999999999986 6799999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 010740 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVME 345 (502)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (502)
+++|.++|+.|.+ .++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 595 ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 595 VDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999955 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 010740 346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN 425 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (502)
+|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCcHHHHH
Q 010740 426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK----E-------------------GMNDKVYA 482 (502)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~ 482 (502)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..++|+.
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999876542 1 12467999
Q ss_pred HHHHHHHhhhhc
Q 010740 483 LEQEKLQMLLEA 494 (502)
Q Consensus 483 ~~~~~~~~~~~~ 494 (502)
+|++|.+.+..+
T Consensus 834 lf~eM~~~Gi~P 845 (1060)
T PLN03218 834 VYRETISAGTLP 845 (1060)
T ss_pred HHHHHHHCCCCC
Confidence 999999987553
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-54 Score=434.67 Aligned_cols=371 Identities=18% Similarity=0.228 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
.++..++..+.+.++++.|.+++..+.+.| +.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.++.+
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~ 198 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGG 198 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHH
Confidence 567777788888888888888888888777 67888888888888888888888888888886 4778888888888
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 268 (502)
|++.|++++|+++|++|.+. |..|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 199 LVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 88888888888888888764 55566555544444444444444444444444444444444444444455555555555
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMR 348 (502)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (502)
|.++|+.|. .+|..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.
T Consensus 278 A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 278 ARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred HHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 555554442 234444555555555555555555555555444444444444444444444444444444444444
Q ss_pred HcCCCC-------------------------------ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740 349 KLQFPW-------------------------------TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397 (502)
Q Consensus 349 ~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 397 (502)
+.|+.+ |..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 444444 5555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740 398 INGYANAGLFHKVISSVRLASK-LQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476 (502)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 476 (502)
+.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555543 355555555555555555555555555555443 345555566666666666666
Q ss_pred cHHHHHHHHHHHHhhhh
Q 010740 477 NDKVYALEQEKLQMLLE 493 (502)
Q Consensus 477 ~~~A~~~~~~~~~~~~~ 493 (502)
.+.|.++++++.+..|.
T Consensus 510 ~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 510 LELGRLAAEKLYGMGPE 526 (697)
T ss_pred cHHHHHHHHHHhCCCCC
Confidence 66666666655555444
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-53 Score=429.36 Aligned_cols=367 Identities=16% Similarity=0.220 Sum_probs=350.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
.+...+..+.+.|++++|+++|+++...+.+.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34567888899999999999999999876578999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 269 (502)
++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+
T Consensus 169 ~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred hcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999964 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349 (502)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (502)
.+++..+.+ .|+.+|..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|.+
T Consensus 244 ~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 244 QQLHCCVLK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHH-hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999855 5789999999999999999999999999999996 56899999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHH
Q 010740 350 LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFY 429 (502)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (502)
.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .+|..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 999999999999999999999999999999999999999999999999999999999999999999885 4788999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 430 NAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
|.||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|.+.|..++|.++|++|.+.
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-51 Score=420.92 Aligned_cols=366 Identities=13% Similarity=0.193 Sum_probs=222.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
++..++..+++.|++++|+++|+.|.+.| +.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 34556677777788888888888887776 67888888888888888888888888888888888888888888888888
Q ss_pred HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 269 (502)
++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|
T Consensus 334 ~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 888888888888777753 566677777777777777777777777777777777777666666666666666666
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------------------CCCCC
Q 010740 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN------------------------------FGIDP 319 (502)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------------~~~~~ 319 (502)
.++++.+.+ .|+.|+..+|+.|+.+|++.|++++|.++|++|.+ .++.|
T Consensus 409 ~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~p 487 (857)
T PLN03077 409 VKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487 (857)
T ss_pred HHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Confidence 666666633 35555555555555555555555555555554432 13445
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399 (502)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 399 (502)
|..||+.++.+|++.|..+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|+.+ .+|..+|+.+|.
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~ 562 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLT 562 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHH
Confidence 555555544444444444444444444444444333333333333333333333333333332 344555555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCcH
Q 010740 400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK-EKHCRPDSETFSIMTEAYAKEGMND 478 (502)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~ 478 (502)
+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++.+|.+.|+++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 555555555555555555555555555555555555555555555555555555 3455555555555555555555555
Q ss_pred HHHHHHHHH
Q 010740 479 KVYALEQEK 487 (502)
Q Consensus 479 ~A~~~~~~~ 487 (502)
+|.+++++|
T Consensus 643 eA~~~~~~m 651 (857)
T PLN03077 643 EAYNFINKM 651 (857)
T ss_pred HHHHHHHHC
Confidence 555555554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-51 Score=419.44 Aligned_cols=363 Identities=15% Similarity=0.166 Sum_probs=331.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
.....++..+++.|+++.|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 344667778889999999999999885 457889999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 268 (502)
|+..++++.+.+++..|.+. |+.||..+|+.|+.+|++.|+++.|.++|++|.. ||..+|+.+|.+|++.|++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLE 271 (857)
T ss_pred hCCccchhhHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHH
Confidence 99999999999999999886 8899999999999999999999999999999864 588899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMR 348 (502)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (502)
|+++|++|.+ .|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 272 Al~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 272 GLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 9999999954 578999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740 349 KLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF 428 (502)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (502)
. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.++..+
T Consensus 351 ~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred C----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 4 588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+++|++|...
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999875 58889999999999999999999999999864
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.6e-24 Score=228.48 Aligned_cols=358 Identities=11% Similarity=0.016 Sum_probs=197.8
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI 195 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 195 (502)
..+...|++++|+..|+.+.+.+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 33344455555555555544432 3334444555555555555555555555554432 34445555555555555555
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010740 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG 275 (502)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (502)
++|+..|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.
T Consensus 618 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555554421 3344445555555555555555555555555442 22345555555555555555555555555
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 010740 276 MLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT 355 (502)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (502)
+.+.. ..+...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.+..+.+.... +
T Consensus 695 ~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~ 769 (899)
T TIGR02917 695 LQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-D 769 (899)
T ss_pred HHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 54332 2344455555555566666666666666555432 33345555555666666666666666665554433 5
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435 (502)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (502)
...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ .+|+.+++.+.+.. +.+..++..+...
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 846 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 5566666666666666666666666666543 3345556666666666666 55666666655542 3344555566666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 010740 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL 488 (502)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (502)
+...|++++|.++|+++.+.+.. +..++..++.++.+.|+.++|.+++++|+
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666665433 56666666666666666666666666654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.9e-24 Score=227.92 Aligned_cols=324 Identities=10% Similarity=0.053 Sum_probs=136.5
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 333444444444444443321 2223334444444444444444444444444332 2233344444444444444444
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (502)
|..+++++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..+|...|++++|...|+.+.
T Consensus 552 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 552 AVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444443321 2333334444444444444444444444444331 2234444444444444444444444444443
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH
Q 010740 278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS 357 (502)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (502)
+.. +.+...+..+..++...|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.... +..
T Consensus 629 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 704 (899)
T TIGR02917 629 ALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AAL 704 (899)
T ss_pred HhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChH
Confidence 321 1233344444444444444444444444444322 223344444444444444444444444444443322 333
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (502)
.+..+...+...|++++|.+.|+.+...+ |+..++..+..++...|++++|.+.++.+.+.. +.+..++..+...|.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44444444444444444444444444332 222333334444444444444444444443332 333444444444444
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010740 438 KADDLMEMERVYKRMKE 454 (502)
Q Consensus 438 ~~g~~~~a~~~~~~~~~ 454 (502)
..|++++|.++|+++.+
T Consensus 782 ~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.2e-20 Score=187.78 Aligned_cols=377 Identities=11% Similarity=0.035 Sum_probs=296.0
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740 107 WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186 (502)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (502)
+...+......+...|++++|+..|+.+.+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a 201 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 3455666667788899999999999998874 6788899999999999999999999999999875 45678899999
Q ss_pred HHHHhCCCHHHHHHHHHHhhcCCCCC----------------------------C---CHHHHHHH--------------
Q 010740 187 AAYCRNSLIDEAFVTLNQMKTLPNCQ----------------------------P---DVYTYSTL-------------- 221 (502)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~~~~~~~~~----------------------------~---~~~~~~~l-------------- 221 (502)
.+|...|++++|+..|..+...++.. . ........
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 99999999999987665443221110 0 00000000
Q ss_pred -------------HHHH------HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 010740 222 -------------IKAC------VDAMRFELIETLYQDMDERS-VTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESA 280 (502)
Q Consensus 222 -------------l~~~------~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 280 (502)
+... ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..+++.++..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0000 11357889999999998765 223 45678888888999999999999999998742
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHH
Q 010740 281 TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYN 360 (502)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (502)
+.....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+...+.... +...+.
T Consensus 362 --P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~ 437 (615)
T TIGR00990 362 --PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHI 437 (615)
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHH
Confidence 2346688889999999999999999999998764 566788999999999999999999999999988654 778888
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh------HHHHHHHH
Q 010740 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV------SFYNAVIS 434 (502)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~ 434 (502)
.+..++.+.|++++|+..|++..+.. +-+...++.+...+...|++++|++.|+......-..+. ..++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 89999999999999999999998753 335678899999999999999999999998876421111 11222233
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
.+...|++++|.+++++...... .+...+..+...+.+.|++++|+++|+++.+....
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 34457999999999999988643 24557889999999999999999999999887543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.8e-22 Score=188.04 Aligned_cols=305 Identities=12% Similarity=0.084 Sum_probs=191.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhc
Q 010740 151 LVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP--DVYTYSTLIKACVDA 228 (502)
Q Consensus 151 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~ 228 (502)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+...+ ....+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 444566777888888888887764 34556777777777788888888888877766421111 124566677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 010740 229 MRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD---VWTMNTILSVFANKGQVDMM 305 (502)
Q Consensus 229 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a 305 (502)
|+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777777652 235667777777777777777777777777654221111 12344555666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE 385 (502)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 385 (502)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777766543 33445566666666677777777777776665533322345566666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH
Q 010740 386 GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK---ADDLMEMERVYKRMKEKHCRPDSE 462 (502)
Q Consensus 386 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~ 462 (502)
.|+...+..++..+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..++++|.+.+++|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 344445566666666666666666666666553 3555556655555543 346666666666666655555544
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.1e-21 Score=185.52 Aligned_cols=304 Identities=12% Similarity=0.069 Sum_probs=254.1
Q ss_pred HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhc
Q 010740 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN---TVTQNIVLGGYGK 262 (502)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~ 262 (502)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999853 55677899999999999999999999999987643222 2567888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCcHH
Q 010740 263 AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE----TRTFNILIGAYGKKRMYD 338 (502)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 338 (502)
.|++++|+.+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 999999999999997642 45678899999999999999999999999987653322 224566777888999999
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418 (502)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (502)
+|..+|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++.+.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999887543 5678888999999999999999999999976433234678889999999999999999999998
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHhhhhcc
Q 010740 419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK---EGMNDKVYALEQEKLQMLLEAS 495 (502)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 495 (502)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.+++++++......
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 86 466667788999999999999999999999875 5899999988887765 5689999999999998766555
Q ss_pred ccc
Q 010740 496 GHW 498 (502)
Q Consensus 496 ~~~ 498 (502)
..|
T Consensus 353 p~~ 355 (389)
T PRK11788 353 PRY 355 (389)
T ss_pred CCE
Confidence 544
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2e-20 Score=185.47 Aligned_cols=334 Identities=9% Similarity=-0.027 Sum_probs=275.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
-+...+..+.+.|++++|+.+++.+.... +-+...+..++.++...|+++.|...|+++.+.. +.+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34456777889999999999999988874 5556678888888889999999999999999875 55678889999999
Q ss_pred HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 269 (502)
...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999998753 566788899999999999999999999988776443 33344333 347889999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHH----HHHHHH
Q 010740 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDK----MSSVME 345 (502)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~ 345 (502)
...++.+++... .++...+..+..++...|++++|+..++++.+.. +.+...+..+...|...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 999999876532 2334455566788899999999999999999865 5667888889999999999986 899999
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 010740 346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN 425 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (502)
.+.+.... +...+..+...+...|++++|...+++..+.. +-+...+..+..++...|++++|...++.+...+ +.+
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~ 351 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVT 351 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 99987655 78899999999999999999999999999864 2245677788899999999999999999988753 223
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 426 VSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
...+..+..++...|+.++|...|++..+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455677889999999999999999876
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-21 Score=176.99 Aligned_cols=374 Identities=14% Similarity=0.113 Sum_probs=316.8
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 010740 107 WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPEL-YTAL 185 (502)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l 185 (502)
..+++..+...+-.+|++++|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... ...+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 34666667777788999999999999999863 445779999999999999999999999999876 465443 3455
Q ss_pred HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010740 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265 (502)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 265 (502)
...+...|++.+|...|.+..+.. +-=...|+.|...+-..|+...|++.|++..+.... -...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhc
Confidence 566667899999999998887642 333557999999999999999999999998876332 35788899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010740 266 FDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM 344 (502)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (502)
++.|...+.+.+.. .| ....+..+...|...|+.|.|+..|++.++.. +.-...|+.|..++-..|+..+|.+.+
T Consensus 268 ~d~Avs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999988654 44 45678888889999999999999999999754 444678999999999999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 010740 345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIA 423 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (502)
+........ .....+.|...+...|.+++|..+|....+. .|.- ..++.|...|-++|++++|+..|+++++ +.
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 999988665 6788899999999999999999999998874 5553 5789999999999999999999999988 45
Q ss_pred CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740 424 EN-VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 424 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
|+ ...|+.+...|-..|+.+.|++.+.+.+.. .|. ...++.|...|...|+..+|+.-+++++++.|+.++.+
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 65 678899999999999999999999999884 454 56889999999999999999999999999998877654
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=5.8e-20 Score=182.12 Aligned_cols=362 Identities=8% Similarity=0.026 Sum_probs=288.4
Q ss_pred hhhcHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010740 120 LKKQWFQALQVFEMLKEQPF-YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEA 198 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 198 (502)
+..+|+.---.|....+... -..+..-...++..+.+.|++++|..+++..+... +-+...+..++.+....|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 34555554444443332210 01123345567788889999999999999998874 44566777777888889999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010740 199 FVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 278 (502)
+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+..
T Consensus 96 ~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 96 LQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999853 6677789999999999999999999999998863 33677888999999999999999999998865
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHH
Q 010740 279 SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST 358 (502)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 358 (502)
... .+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.... +...
T Consensus 173 ~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~ 248 (656)
T PRK15174 173 EVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAAL 248 (656)
T ss_pred hCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHH
Confidence 432 233333333 347889999999999999887643344555566678889999999999999999987654 7888
Q ss_pred HHHHHHHHHhcCCHhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740 359 YNNVIEAFSDMGDAKH----MEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS 434 (502)
Q Consensus 359 ~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 434 (502)
+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8899999999999986 899999998863 2356788999999999999999999999999864 556777888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 435 ACIKADDLMEMERVYKRMKEKHCRPDS-ETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
++.+.|++++|+..|+++...+ |+. ..+..+..++...|+.++|++.|+++++..|+
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999863 444 33444677899999999999999999998766
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1e-18 Score=177.00 Aligned_cols=368 Identities=11% Similarity=0.002 Sum_probs=225.2
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI 195 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 195 (502)
..+...|++++|+++|+.+.+.. +.+...+..++.++...|++++|...++++.+.. +.+.. +..+..++...|+.
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCH
Confidence 33444455555555555444431 3333344444444445555555555555544432 22333 44444444445555
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHh-----ccC
Q 010740 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT------VTQNIVLGGYG-----KAG 264 (502)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~l~~~~~-----~~g 264 (502)
++|+..++++.+.. +.+...+..+..++...+..+.|++.++.... .|+. .....++.... ..+
T Consensus 133 ~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 133 WDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 55555555544421 23333334444444444444444444443332 1110 00111111111 111
Q ss_pred Ch---HHHHHHHHHHHHcCCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccC
Q 010740 265 MF---DQMERVLSGMLESATCKPDVW-TM----NTILSVFANKGQVDMMERWYEKFRNFGID-PETRTFNILIGAYGKKR 335 (502)
Q Consensus 265 ~~---~~a~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 335 (502)
++ ++|++.++.+++.....|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+ .....+..+|...|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g 286 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcC
Confidence 22 456666666654322223221 11 11134456779999999999999887532 22 22233577899999
Q ss_pred cHHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----------CCC---HHHHHHHH
Q 010740 336 MYDKMSSVMEYMRKLQFPW---TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-----------KAD---TKTFCCLI 398 (502)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~l~ 398 (502)
++++|+.+|+.+.+..... .......+..++...|++++|..+++.+.+... .|+ ...+..+.
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999987754321 134566677788999999999999999987521 123 23456677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCc
Q 010740 399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMN 477 (502)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 477 (502)
..+...|++++|++.++.+.... +.+...+..+...+...|++++|++.+++..... |+ ...+..++..+.+.|++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCH
Confidence 88889999999999999998864 6778889999999999999999999999999853 54 66777788889999999
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 010740 478 DKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~~ 496 (502)
++|.++++++++..|++..
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH
Confidence 9999999999998877653
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=4.1e-19 Score=188.25 Aligned_cols=360 Identities=12% Similarity=0.047 Sum_probs=203.0
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH------------
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEP-TPELY------------ 182 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------ 182 (502)
..+...|++++|+..|+.+.+.. +.+..++..+..++.+.|++++|...|++..+..-.. ....|
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34567899999999999998863 5578899999999999999999999999998764211 11112
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---
Q 010740 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG--- 259 (502)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--- 259 (502)
......+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+.... +...+..+...
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 223456778999999999999998853 567778888999999999999999999999876332 34444433333
Q ss_pred ---------------------------------------HhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740 260 ---------------------------------------YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300 (502)
Q Consensus 260 ---------------------------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (502)
+...|++++|++.|++.++.. +-+...+..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 334566666666666665532 223445555666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh---------HHHHHHHHHHHhcCC
Q 010740 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS---------STYNNVIEAFSDMGD 371 (502)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~ 371 (502)
++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 6666666666665432 223333333333333444444444444332111100000 000111222333333
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010740 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKR 451 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 451 (502)
.++|..+++. .+.+...+..+...+.+.|++++|++.|+.+.+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333333330 12223333444444445555555555555444432 33444444445555555555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 452 MKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 452 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
+.+... .+..++..+..++...|++++|.+++++++..
T Consensus 663 ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 443211 12333444444444455555555555554443
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=4.3e-20 Score=167.30 Aligned_cols=355 Identities=15% Similarity=0.148 Sum_probs=295.5
Q ss_pred HhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 010740 105 KAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELY 182 (502)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 182 (502)
....+.+..+..++...|+.+.|.+.|....+. .|+.. ....+...+-..|++++|...|.+.++. .|. ..+|
T Consensus 147 p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiaw 221 (966)
T KOG4626|consen 147 PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAW 221 (966)
T ss_pred chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeee
Confidence 344566777778899999999999999998875 55554 4555667777799999999999998876 444 5679
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK 262 (502)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 262 (502)
..|...+-.+|+...|++.|++..+.+ +.=...|-.|...|...+.++.|...|.+..... +.....+..+...|..
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYE 298 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEec
Confidence 999999999999999999999998763 3335679999999999999999999999987763 2256778888888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010740 263 AGMFDQMERVLSGMLESATCKPD-VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS 341 (502)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (502)
.|.++.|+..+++.++. .|+ ...|+.|..++-..|++.+|.+.|.+.+... +......+.|...|...|.++.|.
T Consensus 299 qG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred cccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHH
Confidence 99999999999999875 444 5789999999999999999999999998754 455678999999999999999999
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
.+|....+.... -....+.|...|-++|++++|+..|++.++ ++|+. ..|+.+...|-..|+.+.|.+.+..++..
T Consensus 375 ~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 375 RLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 999998886443 456789999999999999999999999987 57765 58999999999999999999999999885
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCc
Q 010740 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMN 477 (502)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 477 (502)
+ +-=...++.|...|-..|++.+|+.-|++... ++|| +..|..++.++--..+|
T Consensus 452 n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 452 N-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred C-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence 4 33356788999999999999999999999987 4666 44666666655443333
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=2.8e-18 Score=181.93 Aligned_cols=368 Identities=8% Similarity=0.005 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTY------------MKLLVLLGKSGQPELARKVFNEMVEEGIE 176 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 176 (502)
..+..+...+.+.|++++|+..|+.+.+...-.+....+ ......+.+.|++++|...|+++.+.. +
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P 382 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-N 382 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 455556677888999999999999988754212222212 223456788999999999999999874 4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH-----------------------------------
Q 010740 177 PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL----------------------------------- 221 (502)
Q Consensus 177 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----------------------------------- 221 (502)
.+...+..+..++...|++++|++.|+++.+.. +.+...+..+
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 567788889999999999999999999988742 3333333222
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010740 222 -------IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILS 294 (502)
Q Consensus 222 -------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (502)
...+...|++++|.+.|++..+.... +...+..+...|.+.|++++|...++++++.. +.+...+..+..
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al 537 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGL 537 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence 23445678999999999999887443 66788889999999999999999999997643 234455555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH---------HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 010740 295 VFANKGQVDMMERWYEKFRNFGIDPET---------RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365 (502)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (502)
.+...++.++|+..++.+......++. ..+..+...+...|+.++|.++++. .+.+...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 677899999999999876543222221 1233456778889999999999872 23466778889999
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 010740 366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM 445 (502)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 445 (502)
+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|++.++.+.+.. +.+...+..+..++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999864 3357788999999999999999999999887653 44566777888999999999999
Q ss_pred HHHHHHHHHCCCC--C---CHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740 446 ERVYKRMKEKHCR--P---DSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 446 ~~~~~~~~~~g~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (502)
.++++++...... | +...+..+...+...|++++|++.|++++.
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999875322 2 234666778889999999999999999975
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=5e-18 Score=169.05 Aligned_cols=342 Identities=10% Similarity=-0.042 Sum_probs=266.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC 225 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 225 (502)
.+......+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 4556778899999999999999999875 6788899999999999999999999999998853 56678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-----------------------------C---CHHHHHHH-----------------
Q 010740 226 VDAMRFELIETLYQDMDERSVT-----------------------------P---NTVTQNIV----------------- 256 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~g~~-----------------------------~---~~~~~~~l----------------- 256 (502)
...|++++|+..|..+...+.. . .......+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998766544321100 0 00000000
Q ss_pred ----------HHHH------hccCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010740 257 ----------LGGY------GKAGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319 (502)
Q Consensus 257 ----------~~~~------~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 319 (502)
+..+ ...+++++|.+.|+..++.....| ....+..+...+...|++++|+..|++..+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 0000 123578899999999876543333 45668888888999999999999999998754 44
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399 (502)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 399 (502)
....|..+...+...|++++|...|+.+.+.... +...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 4668888999999999999999999999887654 78899999999999999999999999998863 234667788889
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHHHHh
Q 010740 400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS-----E-TFSIMTEAYAK 473 (502)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-----~-~~~~l~~~~~~ 473 (502)
++...|++++|+..++...+.. +.+...|+.+..++...|++++|++.|++..+.....+. . .++.....+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999988763 566888999999999999999999999999875322111 1 12222233445
Q ss_pred cCCcHHHHHHHHHHHHhhhhcc
Q 010740 474 EGMNDKVYALEQEKLQMLLEAS 495 (502)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~~ 495 (502)
.|++++|.++++++++..++..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcH
Confidence 7999999999999998866543
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3e-16 Score=156.19 Aligned_cols=375 Identities=10% Similarity=0.002 Sum_probs=275.3
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740 113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192 (502)
Q Consensus 113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (502)
.++..+...|+.++|+..++..... .+........+...+...|++++|.++|+++.+.. +-+...+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence 5666677789999999999988732 13344455555778888999999999999999875 45577777888889999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740 193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272 (502)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (502)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+... -+...+..++..+.+.|-...|+++
T Consensus 150 ~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 150 GRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred CCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999998875 46655565554455456666669999999988743 2566666666666655554444443
Q ss_pred H------------------------------------------------HHHHHcCCCCCCH-H----HHHHHHHHHHhc
Q 010740 273 L------------------------------------------------SGMLESATCKPDV-W----TMNTILSVFANK 299 (502)
Q Consensus 273 ~------------------------------------------------~~~~~~~~~~~~~-~----~~~~l~~~~~~~ 299 (502)
. +.++...+-.|.. . ...-.+-++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 3 2332222222321 1 122345567788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-----CCChHHHHHHHHHHHhcCCHhH
Q 010740 300 GQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQF-----PWTSSTYNNVIEAFSDMGDAKH 374 (502)
Q Consensus 300 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~ 374 (502)
|++.++++.|+.+...+.+....+-..+..+|...++.++|..++..+..... .++......|.-++...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 89999999999999888776677888899999999999999999998866532 2234445778888999999999
Q ss_pred HHHHHHHHHHcC-------------CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC
Q 010740 375 MEYTFEQMHAEG-------------MKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440 (502)
Q Consensus 375 a~~~~~~m~~~~-------------~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 440 (502)
|..+++++.+.- ..||-. .+..++..+...|++.+|++.++.+.... |-|..+...+...+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 999999998731 122222 34456677888999999999999987764 778889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 441 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
.+.+|++.++....... -+..+....+..+...|++++|.++.+...+..|++..
T Consensus 465 ~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 465 LPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred CHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 99999999977776522 25667778888888999999999999888888777653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=8e-16 Score=156.14 Aligned_cols=379 Identities=9% Similarity=0.016 Sum_probs=291.0
Q ss_pred HhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010740 105 KAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA 184 (502)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 184 (502)
......+...+......|+.++|+++|..+.... +.+...+..+...+...|++++|..+|++.++.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3445778888888899999999999999988642 5567789999999999999999999999998874 556788889
Q ss_pred HHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010740 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG 264 (502)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 264 (502)
+..++...|++++|+..++++.+.. +.+.. +..+..++...|++++|+..++++.+.... +...+..+...+...+
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 9999999999999999999998753 56666 888999999999999999999999987444 6667777888888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----
Q 010740 265 MFDQMERVLSGMLESATCKPDV------WTMNTILSVFA-----NKGQV---DMMERWYEKFRNF-GIDPETR-TF---- 324 (502)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~---- 324 (502)
..+.|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 165 ~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 165 LSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred ChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 99999999987643 2221 11222222222 12234 7788899888854 1123221 11
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 010740 325 NILIGAYGKKRMYDKMSSVMEYMRKLQFP-WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA---DTKTFCCLING 400 (502)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~ 400 (502)
...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 11133456779999999999999987643 222 22235778999999999999999988653211 13456667778
Q ss_pred HHhcCChHHHHHHHHHHHhcCC-----------CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010740 401 YANAGLFHKVISSVRLASKLQI-----------AEN---VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSI 466 (502)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 466 (502)
+...|++++|.++++.+....- .|+ ...+..+...+...|+.++|+++++++.... +-+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8999999999999998887531 122 2345667788999999999999999998864 336788999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740 467 MTEAYAKEGMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
+...+...|++++|++.++++++..|++..
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 999999999999999999999999887644
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2.6e-15 Score=149.60 Aligned_cols=370 Identities=12% Similarity=0.048 Sum_probs=269.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKE-GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (502)
.+....+.|+++.|++.|+.+.+.. |+. .....++..+...|+.++|+..+++.... .+........+...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHc
Confidence 3344568999999999999998863 443 23338888899999999999999999822 123344445557789999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740 193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272 (502)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (502)
|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999853 566777888889999999999999999999876 44555565555555556777679999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH------------------------------------------------
Q 010740 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDM------------------------------------------------ 304 (502)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------------------------------------------ 304 (502)
++++++.. +.+...+..++.+..+.|-...
T Consensus 192 ~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 192 SSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99998763 2244444555555555443332
Q ss_pred HHHHHHHHHhC-CCCCCH-H----HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 010740 305 MERWYEKFRNF-GIDPET-R----TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378 (502)
Q Consensus 305 a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (502)
|+.-++.+... +..|.. . ...-.+-++...|++.++++.++.+...+.+....+-..+..+|...++.++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33333333321 111221 1 12234456677889999999999999888766677888899999999999999999
Q ss_pred HHHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----------CCC---hHHHHHHHHHHHHc
Q 010740 379 FEQMHAEG-----MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI-----------AEN---VSFYNAVISACIKA 439 (502)
Q Consensus 379 ~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~ 439 (502)
|+.+.... ..++......|.-++...+++++|..+++.+.+... .|| ...+..++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 99987643 122334456788889999999999999998887311 122 22334567778889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 440 g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
|+..+|++.++++...... |......+...+...|...+|.+.++.+....|++
T Consensus 430 gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 9999999999999876433 78888899999999999999999998888776554
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=1.9e-14 Score=146.46 Aligned_cols=368 Identities=10% Similarity=0.016 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
..+..++..+.++++++.+.++.. ..|.......-..+....+...++...+..|.+.. +-+......+.-.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~ 385 (987)
T PRK09782 314 YVVGATLPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQ 385 (987)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 445556677778888887776622 12222222111222224466777777777777652 4467777777777
Q ss_pred HHhCCCHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTL-PNCQPDVYTYSTLIKACVDAMR---FELIETL----------------------YQDMD 242 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~~~ 242 (502)
..+.|+.++|.++|+..... +.-..+......++..|.+.+. ...+..+ .....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 88899999999999988762 1123344455577777777665 3333222 11111
Q ss_pred hC-CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010740 243 ER-SV-TP--NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGID 318 (502)
Q Consensus 243 ~~-g~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 318 (502)
.. +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 11 11 33 56778888877776 7888899988887665 466554444555567899999999999987653 4
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI 398 (502)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 398 (502)
|+...+..+..++.+.|+.++|...+....+.... +...+..+.......|++++|...+++..+. .|+...+..+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA 616 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA 616 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 55555667778888999999999999999887533 3444444444555669999999999999875 56788899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcH
Q 010740 399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478 (502)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 478 (502)
.++.+.|++++|+..++...... +.+...++.+..++...|++++|+..|++..+... -+...+..+..++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999875 66788888999999999999999999999998643 26778999999999999999
Q ss_pred HHHHHHHHHHHhhhhcc
Q 010740 479 KVYALEQEKLQMLLEAS 495 (502)
Q Consensus 479 ~A~~~~~~~~~~~~~~~ 495 (502)
+|+..++++++..|+..
T Consensus 695 eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 695 ATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 99999999999877543
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=4e-14 Score=134.72 Aligned_cols=364 Identities=10% Similarity=0.061 Sum_probs=288.4
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 200 (502)
.|++++|.+++..+.++. +.....|..|...|-..|+.+++...+-.+-... +.|...|..+.....+.|.+++|.-
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 499999999999999884 7788899999999999999999999887766554 6678999999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHH
Q 010740 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQN----IVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
.|.+..+.. +++...+-.-...|-+.|+...|...|.++.....+.|..-+. .+++.+...++.+.|.+.++..
T Consensus 229 cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999864 6777777777888999999999999999999875443444333 3455677778889999999988
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHHH
Q 010740 277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP---------------------------ETRTFNILIG 329 (502)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l~~ 329 (502)
+...+-.-+...++.++..+.+...++.+......+......+ +..+ -.++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 7754445566778899999999999999999888877622222 2222 12223
Q ss_pred HHHccCcHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740 330 AYGKKRMYDKMSSVMEYMRKLQ--FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
++......+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3444455555555555555555 44467789999999999999999999999999875555677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCcHH
Q 010740 408 HKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK--------EKHCRPDSETFSIMTEAYAKEGMNDK 479 (502)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~g~~p~~~~~~~l~~~~~~~g~~~~ 479 (502)
+.|.+.|+.++... +.+..+--.|...+.+.|+.++|.+.++.+. ..+..|+..........+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999874 5566777788889999999999999999854 23456667777777888999999988
Q ss_pred HHHHHHHHHHhh
Q 010740 480 VYALEQEKLQML 491 (502)
Q Consensus 480 A~~~~~~~~~~~ 491 (502)
-+...-+++...
T Consensus 545 fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 545 FINTASTLVDDF 556 (895)
T ss_pred HHHHHHHHHHHH
Confidence 777766666643
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.7e-14 Score=125.75 Aligned_cols=346 Identities=12% Similarity=0.106 Sum_probs=262.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST 220 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+-+..+|..+|.++|+-...+.|.+++++........+..+||.+|.+-.-.. ..+++.+|... .+.||..|+|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-km~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-KMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh-hcCCchHhHHH
Confidence 34567999999999999999999999999988877899999999987654332 26788888876 78999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHcC---CCC----CCHHH
Q 010740 221 LIKACVDAMRFEL----IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ-MERVLSGMLESA---TCK----PDVWT 288 (502)
Q Consensus 221 ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~----~~~~~ 288 (502)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++...- .++ .|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56788999999999999999999999999887643 555555554321 122 24566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHH
Q 010740 289 MNTILSVFANKGQVDMMERWYEKFRNFG----IDPE---TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNN 361 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (502)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.....|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7788889999999999988876665321 2233 23467778888888899999999999988877789999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch--------H-----HHHHHHH-------HHHhc
Q 010740 362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG-LF--------H-----KVISSVR-------LASKL 420 (502)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~~-------~~~~~ 420 (502)
++++....+.++-.-++|.+++..|..-.......++..+++.. .. . -|..+++ .+.+
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~- 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA- 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence 99999999999999999999998886666655555555555544 11 1 1111111 2222
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHH---HHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR-PDSETFS---IMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
........+.++-.+.+.|..++|.++|..+...+-+ |-....+ -+++.-.+.++...|+..++-|......
T Consensus 518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 3445566788888899999999999999999665432 3333444 5566677888999999999998776443
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.5e-15 Score=133.21 Aligned_cols=366 Identities=13% Similarity=0.139 Sum_probs=228.1
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTY-MKLLVLLGKSGQPELARKVFNEMVEEGIEPT------PELYTALLAAY 189 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~ 189 (502)
.+.....+.+|+..|+-+.+.. .-|+...+ ..+...+.+.+.+.+|++.|...+.. .|+ ....+.+...+
T Consensus 210 qy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeE
Confidence 3444455556666666555544 23333322 23445556666677777776666544 232 23345555566
Q ss_pred HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------------CHHHHHHH-
Q 010740 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP------------NTVTQNIV- 256 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~~~~~l- 256 (502)
++.|+++.|+..|+.+.+. .|+..+-..|+-++...|+.++..+.|..|+..-..+ +....+.-
T Consensus 287 iq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 6777777777777776654 4666655555556666677777777777765432111 11111100
Q ss_pred --------------------------------------------------------------HHHHhccCChHHHHHHHH
Q 010740 257 --------------------------------------------------------------LGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 257 --------------------------------------------------------------~~~~~~~g~~~~a~~~~~ 274 (502)
...|.+.|+++.|.++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 112556777777777776
Q ss_pred HHHHcCCCCCCHHHHHHHH------------------------------------HHHHhcCCHHHHHHHHHHHHhCCCC
Q 010740 275 GMLESATCKPDVWTMNTIL------------------------------------SVFANKGQVDMMERWYEKFRNFGID 318 (502)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~ 318 (502)
-..++.. +.....-+.|- ......|++++|.+.|++.+.....
T Consensus 444 v~~~kdn-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDN-KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccc-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 5533211 11000111000 0111356777777777777654432
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI 398 (502)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 398 (502)
.....|++ .-.+-..|++++|++.|-.+...-.. +......+...|....+...|++++.+.... ++.|+..+.-|.
T Consensus 523 c~ealfni-glt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFNI-GLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 33333332 22455667777777777665443222 5566666777777777888888887665543 456778888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCc
Q 010740 399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY-AKEGMN 477 (502)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~ 477 (502)
..|-+.|+-..|.+.+-.--+. ++.|..+...|...|....-+++++.+|++..- ++|+..-|..++..| .+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence 9999999888888876554443 577888899999999999999999999998765 689999999888755 689999
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 010740 478 DKVYALEQEKLQMLLEAS 495 (502)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~ 495 (502)
.+|+++++..-...|++.
T Consensus 677 qka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHHHHHHhCccch
Confidence 999999999888766654
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=7.8e-14 Score=142.12 Aligned_cols=355 Identities=9% Similarity=0.045 Sum_probs=241.0
Q ss_pred hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhCCC---HH
Q 010740 122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE-G-IEPTPELYTALLAAYCRNSL---ID 196 (502)
Q Consensus 122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~ 196 (502)
+...++.+.+..+.+.. +-+......+.-...+.|+.++|.++|+..... + -..+......++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 44444444444444431 334445555555555666666666666655541 1 11233334455555554443 12
Q ss_pred HH-------------------------HHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010740 197 EA-------------------------FVTLNQMKTLPNCQP--DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN 249 (502)
Q Consensus 197 ~a-------------------------~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 249 (502)
++ .+.+..... ..++ +...|..+..++.. ++.++|...+.+.... .|+
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG--DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc--cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 22 222222222 1134 67778888877776 7888888877777765 355
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740 250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG 329 (502)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (502)
......+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...+++..+.+ +.....+..+..
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 544444555567889999999999887543 4455556677778888999999999999888754 333334444444
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010740 330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK 409 (502)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 409 (502)
.+...|++++|...+.+..+..+ +...|..+..++.+.|+.++|+..|++..+.. +-+...+..+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 55566999999999998887654 57788888899999999999999999988863 2345677788888899999999
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 010740 410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMNDKVYALEQEKL 488 (502)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (502)
|+..++.+.+.. +.+...+..+..++...|++++|+..|++..+. .|+ ..+.........+..++++|.+-+++..
T Consensus 662 Ai~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 662 SREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999888864 567788888999999999999999999999875 344 3455566677777778888888888777
Q ss_pred Hhhhh
Q 010740 489 QMLLE 493 (502)
Q Consensus 489 ~~~~~ 493 (502)
...++
T Consensus 739 ~~~~~ 743 (987)
T PRK09782 739 TFSFD 743 (987)
T ss_pred hcCcc
Confidence 66544
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.9e-14 Score=137.87 Aligned_cols=375 Identities=9% Similarity=0.028 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA 187 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (502)
+.+....+.+-..|++++|...|....+.. +.+ ...+.-|.+.+.+.|+++.+...|+...+.. +.+..+...|..
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 445556667777888888888887776653 222 3345567788888888888888888887763 444566666666
Q ss_pred HHHhCC----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHH
Q 010740 188 AYCRNS----LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDM----DERSVTPNTVTQNIVLGG 259 (502)
Q Consensus 188 ~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~ 259 (502)
.|...+ ..+.|..++.+..+. .+.|...|-.+...+-...-+.. +.+|... ...+..+.....|.+...
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 666654 467777777777763 36677777777666655444333 5555543 345555777888888888
Q ss_pred HhccCChHHHHHHHHHHHHcCC--CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010740 260 YGKAGMFDQMERVLSGMLESAT--CKP------DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY 331 (502)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~--~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 331 (502)
+...|+++.|...|........ ..+ +..+-..+..+.-..++++.|.+.|..+.... +-=+..|.-++...
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHH
Confidence 8888888888888887754410 112 22233334555556667777777777766532 11122222222122
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH---------------------------------------
Q 010740 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDA--------------------------------------- 372 (502)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------------------------- 372 (502)
...+...+|...++.....+-. ++..++.+...+.....+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 2234445555555554443222 333333333333333333
Q ss_pred ---------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 010740 373 ---------KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443 (502)
Q Consensus 373 ---------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (502)
+.|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.++.+.. .....+|-.+..+|..+|++.
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHH
Confidence 44555555544432 2233444444455555555555555555555442 223344455555555555555
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 444 EMERVYKRMKEK-HCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 444 ~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
.|+++|+..... +..-+......|.+++.+.|.+.+|.+.+..+....|.
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 555555544433 22234445555555555555555555555555554443
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=2.1e-13 Score=127.89 Aligned_cols=283 Identities=8% Similarity=0.018 Sum_probs=191.2
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhCCCHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGT-YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYT--ALLAAYCRNSLIDE 197 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 197 (502)
.|+|++|.+......+.. ++... |.....+..+.|+++.|.+.|.++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 688888887777665542 12233 333345557888888888888888765 45554333 33567778888888
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHhccCChHHHH
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV-------TQNIVLGGYGKAGMFDQME 270 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~~~~~~~g~~~~a~ 270 (502)
|...++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...
T Consensus 172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887743 5667778888888888888888888888888776543221 2233333333444555556
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
++++.+.+. .+.+......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+..+...+.
T Consensus 250 ~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 250 RWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 666655432 2346667777777888888888888888777762 4444222 223333457777788777777776
Q ss_pred CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740 351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK 419 (502)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (502)
... |...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 554 6677777777888888888888888877764 57777777777777788888888777776644
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.9e-13 Score=118.25 Aligned_cols=365 Identities=12% Similarity=0.141 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
.++..+|..+++--..++|.++|+...... .+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.+
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 667778888888899999999999887765 48889999999987654333 7899999999999999999999999
Q ss_pred HHhCCCHHH----HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCC---C-CHHHHHH
Q 010740 189 YCRNSLIDE----AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL-IETLYQDMDE----RSVT---P-NTVTQNI 255 (502)
Q Consensus 189 ~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~---~-~~~~~~~ 255 (502)
..+.|+++. |.+++.+|++. |+.|...+|..++..+++.++..+ +..++.++.. ..++ | |...|..
T Consensus 283 ~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 999998765 56788889997 899999999999999999888744 4444444433 2222 2 4455677
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740 256 VLGGYGKAGMFDQMERVLSGMLESAT---CKPD---VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG 329 (502)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (502)
.+..|.+..+.+-|.++..-+....+ +.|+ ..-|..+....|.....+....+|+.|+-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 78888899999999998876632221 1222 23466777888899999999999999998888899999999999
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CH--------hH-----HHHH-------HHHHHHcCCC
Q 010740 330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG-DA--------KH-----MEYT-------FEQMHAEGMK 388 (502)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~-------~~~m~~~~~~ 388 (502)
+..-.|.++-.-+++..+...|...+...-..++..+++.. .. .. |..+ -.+|.+ ..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QD 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--cc
Confidence 99999999999999999999887666666666666666544 11 10 1111 122333 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010740 389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQI----AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF 464 (502)
Q Consensus 389 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 464 (502)
......+.+.-.+.+.|..++|.+++..+.+.+- .|.......+++.-.+.++...|..+++-|...+..--...-
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La 599 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLA 599 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHH
Confidence 5566777888888999999999999999865532 233334446667777889999999999999776443222233
Q ss_pred HHHHHHHHhcCCcHHHH
Q 010740 465 SIMTEAYAKEGMNDKVY 481 (502)
Q Consensus 465 ~~l~~~~~~~g~~~~A~ 481 (502)
+-+...|.-+..-.+|+
T Consensus 600 ~RI~e~f~iNqeq~~~l 616 (625)
T KOG4422|consen 600 QRIMEDFAINQEQKEAL 616 (625)
T ss_pred HHHHHhcCcCHHHHHHH
Confidence 44444454443333333
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.5e-12 Score=119.73 Aligned_cols=377 Identities=10% Similarity=0.062 Sum_probs=293.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHH
Q 010740 113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEM----VEEGIEPTPELYTALLAA 188 (502)
Q Consensus 113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~ 188 (502)
.+..++.+..-|+.|..+++.+++. ++-+...|.+-...=-.+|+.+...+++++- ...|+..+...|-.=...
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 3444556666777777777777765 4666667776666666777777777776643 344777777777777777
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQ--PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF 266 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 266 (502)
|-..|..-.+..+....... |+. .-..||+.-...|.+.+.++-|..+|...++. ++-+...|...+..--..|..
T Consensus 489 ~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH
Confidence 77777777777777666544 222 22456777777888888888888888887776 344667777777666677888
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 010740 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEY 346 (502)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (502)
+....+|++.+.. ++.....|-.....+-..|+...|..++.+..+.. +.+...|-.-+..-....+++.|..+|.+
T Consensus 567 Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 567 ESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8888888888764 34455666667777788899999999999888765 55778888888888999999999999998
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 010740 347 MRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN 425 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (502)
.... .++...|..-+...--.+..++|.+++++.++. -|+. ..|..+.+.+-+.++++.|.+.|..-.+. ++..
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 8774 457777877777777789999999999998875 5554 47778888999999999999998876664 4666
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccccccC
Q 010740 426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQNI 502 (502)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~i 502 (502)
+..|-.|...--+.|.+-.|..++++.+-++.+ +...|-..|+.-.+.|..+.|..++-++++..|.+.-.|.++|
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 778888888888999999999999999988655 8889999999999999999999999999999999999998765
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=7.5e-14 Score=131.62 Aligned_cols=292 Identities=12% Similarity=0.072 Sum_probs=193.6
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 269 (502)
..|+++.|.+.+.+..+. .|+ ...+-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 467777777777766553 233 3334444556666777777777777766543222222333346667777778888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HccCcHHHHHHHHH
Q 010740 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN-ILIGAY---GKKRMYDKMSSVME 345 (502)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~ 345 (502)
...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++. +...+. .-..++ ...+..+++.+.+.
T Consensus 173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 87777776643 335566777777777888888888888777776543 222221 111111 22222233333444
Q ss_pred HHHHcCCC---CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCChHHHHHHHHHHHh
Q 010740 346 YMRKLQFP---WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT--F-CCLINGYANAGLFHKVISSVRLASK 419 (502)
Q Consensus 346 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (502)
.+.+.... .+...+..++..+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44443221 377888888889999999999999999988763 44432 1 1112222345778888888888777
Q ss_pred cCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 420 LQIAENV--SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 420 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
.. +.|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+...
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 53 5555 67778999999999999999999964444457899999999999999999999999999987764
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.5e-13 Score=128.91 Aligned_cols=285 Identities=8% Similarity=0.035 Sum_probs=187.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCChHH
Q 010740 192 NSLIDEAFVTLNQMKTLPNCQPDVYT-YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQN--IVLGGYGKAGMFDQ 268 (502)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~ 268 (502)
.|++++|.+.+....+. .++... |........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 46666666666554432 112222 222233335666666666666666554 23332221 22455666677777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCcHHHHH
Q 010740 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET-------RTFNILIGAYGKKRMYDKMS 341 (502)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~ 341 (502)
|...++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777776665532 334555666666667777777777777776665433221 12223333333334455555
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ 421 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (502)
++++.+.+.- +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 5655554332 347788888899999999999999999888874 4555322 2333445688999999998888763
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
+.|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.+...
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 667778889999999999999999999999984 6899999999999999999999999999987754
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=5.1e-13 Score=125.96 Aligned_cols=288 Identities=9% Similarity=0.012 Sum_probs=159.9
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCCHH
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP--ELYTALLAAYCRNSLID 196 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 196 (502)
..|+++.|.+.+....+. .|+ ...+-....++...|+++.|.+.+.+..+. .|+. .........+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 467888888887776654 233 233444556677778888888888777654 2443 23334467777778888
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hccCChHHHHHHH
Q 010740 197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY---GKAGMFDQMERVL 273 (502)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~g~~~~a~~~~ 273 (502)
.|...++.+.+.. +.+...+..+...+...|++++|.+++..+.+.++.+.......-...+ ...+..+...+.+
T Consensus 171 ~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888777642 5566677777777888888888888888877776542222111111111 2222222223344
Q ss_pred HHHHHcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCcHHHHHHHHHHHH
Q 010740 274 SGMLESAT--CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRT---FNILIGAYGKKRMYDKMSSVMEYMR 348 (502)
Q Consensus 274 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (502)
..+.+... .+.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 33333210 11255666666667777777777777777666542 22221 0111111122345555555555555
Q ss_pred HcCCCCCh--HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740 349 KLQFPWTS--STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLA 417 (502)
Q Consensus 349 ~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (502)
+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44332 33 4445555556666666666666663332223455555555666666666666666665544
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=2.6e-16 Score=141.01 Aligned_cols=261 Identities=18% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740 149 KLLVLLGKSGQPELARKVFNEMVEEG-IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD 227 (502)
Q Consensus 149 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 227 (502)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|++.++++...+ +.+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 44566666667777777665433322 12334444455555556666666776666666542 2234445555555 56
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740 228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER 307 (502)
Q Consensus 228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 307 (502)
.+++++|.+++....+.. ++...+..++..+...++++++.++++.+.+......+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666554432 344555566666666666666666666665443334555666666666666666666766
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 010740 308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM 387 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 387 (502)
.+++..+.. +.+......++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|+..|++..+..
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 666666543 3345566666666666666666666666655543 2245556666666666666666666666666542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740 388 KADTKTFCCLINGYANAGLFHKVISSVRLA 417 (502)
Q Consensus 388 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (502)
+.|......+..++...|+.++|.++.+++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 235555566666666666666666665544
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.7e-12 Score=115.52 Aligned_cols=371 Identities=11% Similarity=0.050 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELYTALL 186 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 186 (502)
..+......+.++|+|++|++.|.+..+. .|+ ...|.....+|...|+|+++.+--...++.+ |+ ...+..-.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA 190 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRA 190 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHH
Confidence 44555566788999999999999999985 677 7789999999999999999999888888763 44 34555555
Q ss_pred HHHHhCCCHHHHHHHH----------------------H---------Hhhc-CCCCCCCHHHHHHHHHHHHh-------
Q 010740 187 AAYCRNSLIDEAFVTL----------------------N---------QMKT-LPNCQPDVYTYSTLIKACVD------- 227 (502)
Q Consensus 187 ~~~~~~g~~~~a~~~~----------------------~---------~~~~-~~~~~~~~~~~~~ll~~~~~------- 227 (502)
+++-..|++++|+.=. . .+.+ ...+-|+.....+....+..
T Consensus 191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 6666667666654211 1 1110 11122444333333332211
Q ss_pred ------------------cC---CHHHHHHHHHHHHhC---CCCC---C------HHHHHHHHHHHhccCChHHHHHHHH
Q 010740 228 ------------------AM---RFELIETLYQDMDER---SVTP---N------TVTQNIVLGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 228 ------------------~~---~~~~a~~~~~~~~~~---g~~~---~------~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (502)
.+ .+..+...+.+-... .... | ..+.......+.-.|+.-.|.+-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 00 122222222221110 0011 1 1111222223445788899999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 010740 275 GMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW 354 (502)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (502)
..+.-.. .+...|.-+...|....+.++..+.|.+....+ +-+..+|..-.+.+.-.+++++|..-|++.+.....
T Consensus 351 ~~I~l~~--~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe- 426 (606)
T KOG0547|consen 351 AAIKLDP--AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE- 426 (606)
T ss_pred HHHhcCc--ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence 9876432 222337778888999999999999999998876 667788888888888899999999999999998666
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CC--hH
Q 010740 355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIA-----EN--VS 427 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~--~~ 427 (502)
+...|-.+..+..+.++++++...|++.++. .+-.+..|+.....+..+++++.|.+.|+..++..-. .+ +.
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 7778888888888999999999999999876 4556789999999999999999999999998876311 12 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
+-..++..- -.+++..|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++...+.
T Consensus 506 V~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 506 VHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222333332 348999999999999986543 45578999999999999999999999988763
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=6.9e-13 Score=127.37 Aligned_cols=346 Identities=11% Similarity=0.046 Sum_probs=222.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSG----QPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
+.+.+...|+++.+..+|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 4556777888888888888887763 555667777777766664 4556666666655543 44555665555555
Q ss_pred HhCCCHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC------CCHHHHHHH
Q 010740 190 CRNSLIDEAFVTLNQMK----TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER---SVT------PNTVTQNIV 256 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~------~~~~~~~~l 256 (502)
....-+.. +..|.... .. +-.+-....|.+.......|+++.|...|...... ... ++..+-..+
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 44332222 33333221 11 22345555666666666666666666666655433 111 111122233
Q ss_pred HHHHhccCChH----------------------------------HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740 257 LGGYGKAGMFD----------------------------------QMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302 (502)
Q Consensus 257 ~~~~~~~g~~~----------------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (502)
..++-..++.+ +|...++..++.. ..+...+..+...+.+...+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhh
Confidence 33333344444 4444444444322 23334444455556666666
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHc------------cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 010740 303 DMMERWYEKFRNFG-IDPETRTFNILIGAYGK------------KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369 (502)
Q Consensus 303 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (502)
..|.+-|+...+.- ..+|..+.-.|.+.|.+ .+..++|+++|..+.+..+. |...-|-+.-+++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhc
Confidence 66666555444321 12566666666665543 24678899999999988766 889999999999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 010740 370 GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL-QIAENVSFYNAVISACIKADDLMEMERV 448 (502)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 448 (502)
|++.+|..+|.+..+... -...+|..+.++|...|++..|+++|+...+. .-..+..+...|.+++.+.|++.+|.+.
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999998743 34567889999999999999999999876654 4455788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHH
Q 010740 449 YKRMKEKHCRPDSETFSIMT 468 (502)
Q Consensus 449 ~~~~~~~g~~p~~~~~~~l~ 468 (502)
+...+...+.-....||..+
T Consensus 739 ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHhCCccchHHhHHHH
Confidence 99888764443444555443
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.5e-12 Score=124.23 Aligned_cols=336 Identities=13% Similarity=0.117 Sum_probs=262.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740 145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA 224 (502)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 224 (502)
.......+.+...|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-..... .+.|...|..+...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 344444555566699999999999999886 678899999999999999999999888776654 36778899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcC
Q 010740 225 CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKG 300 (502)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 300 (502)
..+.|+++.|.-.|.+.++... ++...+-.-+..|-+.|+...|.+.|.++.+..+ ..| ......+++.+...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998844 3666666677889999999999999999987532 111 122334566777788
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC---------------------------
Q 010740 301 QVDMMERWYEKFRNF-GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQF--------------------------- 352 (502)
Q Consensus 301 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------------------- 352 (502)
+-+.|.+.++..... +-..+...++.++..|.+...++.+......+.....
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999998887762 2345667788999999999999999988877766211
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHH
Q 010740 353 PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA--DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYN 430 (502)
Q Consensus 353 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 430 (502)
.++... -.+.-++.+....+....+.....+....| +...|.-+..+|...|++.+|+.++..+.....--+..+|-
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 112222 123334455555555555666666665333 45688899999999999999999999999876666788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 010740 431 AVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKL 488 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (502)
.+..+|...|..++|.+.|+..... .| +...--.|...+-+.|+.++|.+.+..+.
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999985 34 45566677888999999999999999876
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.4e-12 Score=109.98 Aligned_cols=296 Identities=11% Similarity=0.070 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCChHHHH
Q 010740 194 LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS-VTPN--TVTQNIVLGGYGKAGMFDQME 270 (502)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~g~~~~a~ 270 (502)
+.++|++.|-+|.+. -+.+..+--+|.+.|.+.|..+.|+++.+.+.+.- .+.+ ......|..-|...|-+|.|+
T Consensus 50 Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 50 QPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred CcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 344444444444432 12233333344444444444444444444444331 0000 112223344455566666666
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHH
Q 010740 271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE----TRTFNILIGAYGKKRMYDKMSSVMEY 346 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (502)
++|..+.+.. .--......|+..|-...+|++|++.-+++...+-.+. ...|.-|...+....+.+.|..++.+
T Consensus 128 ~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6666654422 11233455566666666666666666666655432222 12334444455556677777777777
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 010740 347 MRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV 426 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 426 (502)
..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+...-..+...|..+|...|+.++...++..+.+. .++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence 7766544 444555566677777888888888888777654444566777778888888888888888777764 3444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHhhhhccccc
Q 010740 427 SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA---KEGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
..-..+........-.+.|..++.+-..+ +|+...+..++..-. ..|...+.+.+++.|..........|
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 44455555555555566666655554443 578888888877654 34456677777777777655444443
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=7.1e-16 Score=138.16 Aligned_cols=259 Identities=13% Similarity=0.171 Sum_probs=80.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740 222 IKACVDAMRFELIETLYQDMDERS-VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300 (502)
Q Consensus 222 l~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (502)
...+.+.|++++|+++++...... .+.|...|..+...+...++++.|.+.++++++.. .-+...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccc
Confidence 444444555555555553332222 12233333334444444555555555555554321 1123334444443 4555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHhHHHHHH
Q 010740 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ-FPWTSSTYNNVIEAFSDMGDAKHMEYTF 379 (502)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 379 (502)
++++|.+++++..+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++++
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555444332 2333444455555555566666666655554322 2234555566666666666666666666
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010740 380 EQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR 458 (502)
Q Consensus 380 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 458 (502)
++..+. .| |......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|..+|++..... +
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 666654 34 34555666666666666666666666655543 4455566667777777777777777777766642 2
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740 459 PDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (502)
.|+.....+..++...|+.++|.++.+++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 2566666777777777777777777666554
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.4e-11 Score=113.47 Aligned_cols=364 Identities=10% Similarity=0.041 Sum_probs=188.9
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
|...+.++-|..+|..+.+- ++-+...|......--..|..+....+|+++... ++-....|-.....+...|+...
T Consensus 526 ~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHH
Confidence 33444444444444444432 2333344444444444445555555555555443 12223333444444444555555
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (502)
|..++.+..+.. +.+...|..-+........++.|..+|.+.... .|+..+|..-+....-.+..++|.+++++.+
T Consensus 603 ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 603 ARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 555555544421 334444444445555555555555555544432 3344444444444444455555555555554
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH
Q 010740 278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS 357 (502)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (502)
+.. +.-...|-.+.+.+-+.++.+.|.+.|..-.+ .++.....|..|...=-+.|..-.|..+++...-.++. +..
T Consensus 679 k~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~ 754 (913)
T KOG0495|consen 679 KSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NAL 754 (913)
T ss_pred HhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cch
Confidence 431 11223344444444455555555444443222 12222333444444444445555555555555544444 555
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (502)
.|-..|++-.+.|..+.|..++.+..+. .+-+...|..-|....+.++-......++ ....|..+.-.+...|.
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk-----kce~dphVllaia~lfw 828 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK-----KCEHDPHVLLAIAKLFW 828 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH-----hccCCchhHHHHHHHHH
Confidence 5555555555555555555555554443 22233344444443333333222222222 13456777778888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccccc
Q 010740 438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQ 499 (502)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (502)
...++++|.+.|.+.+..+.. +-.+|.-+...+.++|.-+.-.+++++.....|.....|.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence 889999999999999886432 4568888888889999988888999888887777666664
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.2e-12 Score=110.17 Aligned_cols=256 Identities=12% Similarity=0.121 Sum_probs=126.2
Q ss_pred HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCC
Q 010740 188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV--TPNTVTQNIVLGGYGKAGM 265 (502)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~ 265 (502)
++-...+.+++++-.+..... |++-+...-+....+.....++++|+.+|+++.+... --|..+|..++-.-.....
T Consensus 236 a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 333444555555555555543 4444444444444444555566666666666555421 1134455544422221111
Q ss_pred hH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010740 266 FD-QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM 344 (502)
Q Consensus 266 ~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (502)
.. -|..++ +-. +-.+.|+..+.+-|.-.++.++|...|++.++.+ +.....|+.+..-|....+...|.+-+
T Consensus 315 Ls~LA~~v~----~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 315 LSYLAQNVS----NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHH----Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11 111111 111 1122344445555555555555555555555544 334445555555555555555555555
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 010740 345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (502)
+...+.++. |-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|..+...| ..
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 555555443 55555555555555555555555555555432 2244555555555555555555555555555544 23
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 425 NVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
+...+..|.+.|-+.++..+|...|++.++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444555555555555555555555554443
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.5e-11 Score=105.72 Aligned_cols=285 Identities=9% Similarity=-0.016 Sum_probs=150.2
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 200 (502)
.|+|.+|.++.....+.++ -....|..-..+.-+.|+.+.+-.++.+..+..-.++...+-...+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5777777777766665541 12334555556666677777777777776665324555556666666677777777777
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCChHHHHHHH
Q 010740 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT-------VTQNIVLGGYGKAGMFDQMERVL 273 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~ 273 (502)
-++++.+.. +.+.........+|.+.|++.....++..+.+.|.--+. .+|..+++-....+..+.-...+
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 766666642 555666666777777777777777777777766654333 23444444444444444444444
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 010740 274 SGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP 353 (502)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (502)
+....+ .+.++..-..++.-+...|+.++|.++..+..+.+..++.. ..-.+.+-++...-.+..+...+....
T Consensus 253 ~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 253 KNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 444322 12233344444445555555555555555555444333311 111223334444444444433333222
Q ss_pred CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 354 WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418 (502)
Q Consensus 354 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (502)
++..+..|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++..
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3344455555555555555555555544332 4455555555555555555555555544443
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.6e-13 Score=126.66 Aligned_cols=285 Identities=11% Similarity=0.102 Sum_probs=135.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV--TPNTVTQNIVLGGYGKAGMFDQMERV 272 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (502)
..+|+..|.++... ..-+......+..+|...+++++|+++|+.+.+... .-+.++|...+..+-+. -++..
T Consensus 335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 34555555554331 122223344455555555555555555555544311 11334444444332211 11111
Q ss_pred HH-HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 010740 273 LS-GMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351 (502)
Q Consensus 273 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (502)
+. .++... +-.+.+|.++..+|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 11 111111 2234555555555555555555555555555432 2245555555555555555555555555555442
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHH
Q 010740 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNA 431 (502)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 431 (502)
.. +-..|--+...|.+.++++.|+-.|+...+.+ +-+.+....+...+.+.|+.++|+++++++...+ +.|+..--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 22 22333344455555555666655555555432 1133444445555555555666666665555543 222222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 432 VISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
-+..+...++.++|++.++++++. .| +...|..+...|.+.|+.+.|+.-|--|..+.|.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 344444555566666666665553 22 3344555555566666666665555555554443
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2e-11 Score=108.13 Aligned_cols=332 Identities=14% Similarity=0.090 Sum_probs=247.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHH--H
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYT--Y 218 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~ 218 (502)
..|...+-.....+.+.|....|...|......- +-.=..|..|...+ .+.+.+ ..... +.+.|... =
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~--~l~~~~h~M~~ 230 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVV--GLPSDMHWMKK 230 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHh--cCcccchHHHH
Confidence 3355555566666778888888888888777431 22333333333322 222222 22222 22222111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHH
Q 010740 219 STLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCK-PDVWTMNTILSVFA 297 (502)
Q Consensus 219 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 297 (502)
-.+..++......+++.+-.......|++.+...-+....+.....++++|+.+|+++.+..... -|..+|..++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 23455666777888888888888888888777766777777888999999999999998764333 25677877764332
Q ss_pred hcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHH
Q 010740 298 NKGQVD-MMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHME 376 (502)
Q Consensus 298 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (502)
....+. -|..++. + . +--+.|...+.+.|+-.++.++|...|+...+.+.. ....|+.+..-|....+...|.
T Consensus 311 ~~skLs~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 222211 1111111 1 1 334567788889999999999999999999998776 7788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 377 YTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 377 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
+.|+..++.. +-|...|..|.++|.-.+...-|+-+|+++.... +.|...|.+|..+|.+.++.++|++-|.+....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999864 4578899999999999999999999999999874 7789999999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 457 CRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
-. +...+..|...|-+.++.++|...+++.++..
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33 56789999999999999999999999988853
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=4e-12 Score=107.34 Aligned_cols=287 Identities=12% Similarity=0.044 Sum_probs=185.2
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCC
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP------ELYTALLAAYCRNS 193 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g 193 (502)
-.++.++|+++|-.+.+.. +.+..+--+|.+.|.+.|..+.|+.+...+.++ ||. .+...|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 4577888888888877753 445556677888888888888888888888764 332 34456677777888
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHH
Q 010740 194 LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN----TVTQNIVLGGYGKAGMFDQM 269 (502)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a 269 (502)
-+|.|.++|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+..+. ...|--+...+....+++.|
T Consensus 122 l~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888888888877643 34455677788888888888888888887777654432 12344555555566777778
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349 (502)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (502)
..++.+..+.. +..+..-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+
T Consensus 200 ~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88877776542 2233344455667777788888888887777766555566677777777777777777777777766
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 010740 350 LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN---AGLFHKVISSVRLASK 419 (502)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 419 (502)
....++ .-..+........-.+.|...+.+-... +|+...+..++..-.. .|...+-..+++.|..
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 543322 2333333333344444454444443332 5777777777765543 2334444445555544
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=3.2e-12 Score=112.67 Aligned_cols=345 Identities=14% Similarity=0.150 Sum_probs=250.0
Q ss_pred HhhhcHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740 119 VLKKQWFQALQVFEMLKEQPFYQPK------EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192 (502)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (502)
.+.+.+.+|+++|+....+ .|+ ....+.+...+.+.|+++.|...|+...+. .|+..+--.|+-++...
T Consensus 248 ~kkr~fskaikfyrmaldq---vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 248 FKKREFSKAIKFYRMALDQ---VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred eehhhHHHHHHHHHHHHhh---ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 3557889999999887765 232 224555566778889999999999988766 57777766677777778
Q ss_pred CCHHHHHHHHHHhhcCCCCC-----------CCHHHHHHH----------------------------------------
Q 010740 193 SLIDEAFVTLNQMKTLPNCQ-----------PDVYTYSTL---------------------------------------- 221 (502)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~~l---------------------------------------- 221 (502)
|+.++..+.|.+|...++.. |+....+.-
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 88888888888876553321 221111110
Q ss_pred -----------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--------------------
Q 010740 222 -----------------------IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLG-------------------- 258 (502)
Q Consensus 222 -----------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~-------------------- 258 (502)
..-+.+.|+++.|.++++-+.+..-..-...-+.|-.
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 1135578888999888887765432211111111100
Q ss_pred ----------------HHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010740 259 ----------------GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR 322 (502)
Q Consensus 259 ----------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 322 (502)
.....|++++|.+.+++.+... .......-.+.-.+-..|++++|++.|-++... +..+..
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 0123578999999999886531 122233333445677899999999999888652 245677
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 402 (502)
+...+.+.|-...+...|++++.+.... ++.|+.....|...|-+.|+-..|.+++-+--+. .+-+..+..-|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 8888899999999999999998877665 4458999999999999999999998887654433 3557788888999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISAC-IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476 (502)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 476 (502)
...-+++++.+|+...- +.|+..-|..++..| .+.|++.+|..+|+....+ ++-|......|++.+...|.
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999998765 689999999887655 5689999999999998876 66689999999999888774
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.5e-13 Score=125.39 Aligned_cols=286 Identities=9% Similarity=0.019 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010740 160 PELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNC-QPDVYTYSTLIKACVDAMRFELIETLY 238 (502)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 238 (502)
..+|...|+.+.++ +.-+..+...+..+|...+++++|..+|+.+.+.... ..+..+|.+.+--+-+. -++.++
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45555666653333 2233345555566666666666666666665543211 12344555554433221 111111
Q ss_pred -HHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740 239 -QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316 (502)
Q Consensus 239 -~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (502)
+.+.+. -+-...+|-++..+|.-+++.+.|++.|++.++- .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 122222 1224556666666666666666666666666542 33 45566666666666666666666666655321
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010740 317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCC 396 (502)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 396 (502)
+-+-..|.-+.-.|.+.++++.|+-.|+.+.+.++. +.+....+...+.+.|+.++|+.+|++....+.+ |+..-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 122233344555666666666666666666666554 5556666666666666666666666666654322 3333334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010740 397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR 458 (502)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 458 (502)
.+..+...+++++|+..++++++. ++.+..+|..+...|.+.|+.+.|+.-|.-+.+.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 455555666666676666666664 3445556666666677777777776666666665443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.8e-11 Score=106.63 Aligned_cols=287 Identities=10% Similarity=0.057 Sum_probs=193.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 010740 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER 271 (502)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (502)
.|+|.+|++...+-.+.+ +.....|..-..+..+.|+.+.+-.++.+..+.--.++....-...+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 467777777776655532 333444555556666677777777777776665334455556666666777777777777
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCcHHHHHHHH
Q 010740 272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET-------RTFNILIGAYGKKRMYDKMSSVM 344 (502)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~ 344 (502)
-++++.+.. +.+........++|.+.|++.++..++.++.+.++-.+. .+|..+++-....+..+.-...+
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 777765532 345566677777777777777777777777776655443 34555555555555555545555
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 010740 345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (502)
+..... .+.++..-..++.-+.++|+.++|.++.++..+.+..|... ..-.+.+-++.+.-++..+.-.+. .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 554433 23366677777888888888888888888888776655521 222345666766666666655544 345
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
++..+..|...|.+.+.|.+|...|+...+ ..|+..+|+-+..++.+.|+..+|.+..++.+..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 567788888888899999999999887776 4688888988888999999999998888888744
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=6.2e-10 Score=99.11 Aligned_cols=358 Identities=14% Similarity=0.074 Sum_probs=217.9
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 199 (502)
..+++.+|..+|+.+.... ..+...|...+.+=.++..+..|..++++....- +.-...|-..+..=-..|++.-|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence 3567777888888777653 4455566666666666666666666666665431 111223333333333445555666
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES 279 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 279 (502)
++|++..+- .|+...|++.++.-.+-+.++.|..+|+...-. .|++.+|-...+.-.+.|....|..+|...++.
T Consensus 162 qiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 666555532 456666666666555555555555555555443 345555544444444444444444444333221
Q ss_pred CC------------------------------------------------------------------------------
Q 010740 280 AT------------------------------------------------------------------------------ 281 (502)
Q Consensus 280 ~~------------------------------------------------------------------------------ 281 (502)
.|
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---HccCcHHHHHHHHHHHHHc
Q 010740 282 -CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR-------TFNILIGAY---GKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 282 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~---~~~g~~~~a~~~~~~~~~~ 350 (502)
-+-|-.+|--.+..-...|+.+...++|++.+. +++|-.. .|.-+=-+| ....+.+.+.+++....+.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 011333444445555556666777777776665 3344221 111111111 2246666777777766663
Q ss_pred CCCCChHHHHHHHHHH----HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 010740 351 QFPWTSSTYNNVIEAF----SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV 426 (502)
Q Consensus 351 ~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 426 (502)
++....|+..+--.| .++.++..|.+++...+ |.-|-..+|...|..-.+.++++.+..+|+..++.+ |.|.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 344555555443333 35677778888877655 557888888888888888999999999999998876 6678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 427 SFYNAVISACIKADDLMEMERVYKRMKEKHC-RPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.+|......-...|+.+.|..+|+-.++... ..-...|.+.|..-...|.+++|..++++.++.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8888888888888999999999998887521 112446777777778899999999999988875
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=3e-11 Score=105.60 Aligned_cols=201 Identities=10% Similarity=0.049 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 010740 286 VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365 (502)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (502)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.++...+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555666666666666666666665533 334555566666666667777777666666665433 45566666666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740 366 FSDMGDAKHMEYTFEQMHAEGMK-ADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME 444 (502)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (502)
+...|++++|...+++..+.... .....+..+...+...|++++|...++...+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777776653211 233456666777778888888888887777653 3455667777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 445 MERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 445 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
|..++++..+. ...+...+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888887775 3345666667777788888888888887776654
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=7.1e-12 Score=105.91 Aligned_cols=230 Identities=11% Similarity=0.044 Sum_probs=102.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 010740 255 IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK 334 (502)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (502)
-+.++|.+.|.+.+|++.|+..++. .|-+.||-.|-++|.+..+++.|+.+|.+-++. .+.++....-+...+-..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 3444444444444444444444332 334444444444444444444444444444431 122222223333344444
Q ss_pred CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010740 335 RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV 414 (502)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (502)
++.++|.++++...+.... ++....++...|.-.++.+-|+.+|+++.+.|+. ++..|+.+.-+|...+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 4444455554444443322 3444444444444444555555555555544432 3444444444444455555544444
Q ss_pred HHHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 415 RLASKLQIAEN--VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 415 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
+.+...--.|+ ..+|-.+....+..||+..|.+-|+-....+.. +...++.|.-.-.+.|+.++|..+++.+....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 44443321121 233444444444455555555555554443221 34445555544455555555555555544443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=5.6e-11 Score=103.92 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740 145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA 224 (502)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 224 (502)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Confidence 344445555555555555555555554432 2234444444455555555555555555444421 2333344444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740 225 CVDAMRFELIETLYQDMDERSV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD 303 (502)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (502)
+...|++++|.+.+++...... ......+..+...+...|++++|.+.+++.++.. +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 4444555555555444443211 1112233333344444444444444444443321 112233333334444444444
Q ss_pred HHHHHHHHHH
Q 010740 304 MMERWYEKFR 313 (502)
Q Consensus 304 ~a~~~~~~~~ 313 (502)
+|...+++..
T Consensus 187 ~A~~~~~~~~ 196 (234)
T TIGR02521 187 DARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=6.8e-11 Score=115.97 Aligned_cols=251 Identities=10% Similarity=-0.008 Sum_probs=174.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010740 158 GQPELARKVFNEMVEEGIEPTPELYTALLAAYCR---------NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA 228 (502)
Q Consensus 158 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 228 (502)
+++++|...|++..+.. +-+...|..+..++.. .+++++|...+++..+.+ +.+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 45889999999988764 3345566666555442 244789999999988753 56778888888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 010740 229 MRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDV-WTMNTILSVFANKGQVDMMER 307 (502)
Q Consensus 229 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~ 307 (502)
|++++|...|++..+.+.. +...+..+...+...|++++|...+++.++.. |+. ..+..++..+...|++++|..
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHH
Confidence 9999999999998887533 56778888888999999999999999987653 332 233344555667889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-
Q 010740 308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG- 386 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~- 386 (502)
.++++.....+.+...+..+..++...|++++|...+..+...... +....+.+...|...| +.|...++.+.+..
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9988876542334555777788888899999999999887665332 4455566666777777 47777777665431
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740 387 MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ 421 (502)
Q Consensus 387 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (502)
..+....+ +-..|.-.|+-+.+..+ +.+.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 34445556666666555 6666543
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=1.2e-10 Score=114.22 Aligned_cols=272 Identities=4% Similarity=-0.102 Sum_probs=165.9
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 010740 213 PDVYTYSTLIKACVD-----AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG---------KAGMFDQMERVLSGMLE 278 (502)
Q Consensus 213 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~ 278 (502)
.+...|...+.+... .+++++|..+|++..+.... +...|..+..++. ..+++++|...+++.++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344445555554322 12356777777777765322 3445554444433 23447788888887766
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHH
Q 010740 279 SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST 358 (502)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 358 (502)
.. +.+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.... +...
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 42 3356667777777778888888888888887754 555667777777788888888888888888777554 3333
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438 (502)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 438 (502)
+..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...++.+.... +.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 334444566677888888888877654312234456667777778888888888887765532 2334445555556666
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740 439 ADDLMEMERVYKRMKEK-HCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS 495 (502)
Q Consensus 439 ~g~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 495 (502)
.| ++|...++.+.+. +-.+...-+ +-..|.-.|+.+.+..+ +++.+.++...
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 540 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNIWF 540 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence 66 3666666665543 111222222 33445556666666665 77766655443
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=3.6e-10 Score=107.11 Aligned_cols=299 Identities=14% Similarity=0.127 Sum_probs=216.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
+.--...+...|++++|++.++..... +......+......+.+.|+.++|..+|..+++++ +.|..-|..+..+..
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 333444567789999999999886654 34445677888999999999999999999999986 344444555555552
Q ss_pred hC-----CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010740 191 RN-----SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF-ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG 264 (502)
Q Consensus 191 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 264 (502)
-. ...+...++|+++... -|.......+.-.+.....+ ..+...+..+...|+++ +|..|-..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 22 3577888999988764 24443433333223222233 34566677778888763 5666666777666
Q ss_pred ChHHHHHHHHHHHHcC-------------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740 265 MFDQMERVLSGMLESA-------------TCKPDV--WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG 329 (502)
Q Consensus 265 ~~~~a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (502)
..+-..+++....... .-.|+. +++..+...|-..|++++|++++++.++.. +..+..|..-..
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 6666667766664321 112444 455667888999999999999999999864 444778888899
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH--------HHHHHHHH
Q 010740 330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT--------FCCLINGY 401 (502)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--------~~~l~~~~ 401 (502)
.+-+.|++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+.+..|.... ......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877 888888889999999999999999998887765443221 23456788
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 010740 402 ANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~ 420 (502)
.+.|++..|++.|..+.+.
T Consensus 316 ~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999998887766553
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3e-10 Score=101.51 Aligned_cols=337 Identities=11% Similarity=0.059 Sum_probs=227.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHH
Q 010740 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKA 224 (502)
Q Consensus 147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~ 224 (502)
+....+-|.+.|++++|.+.|.+.++. .|+ +..|.....+|...|+|+++++.-.+..+. .|+ +..+..-..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHH
Confidence 344556788999999999999999987 677 888999999999999999999888777764 343 3344444455
Q ss_pred HHhcCCHHHH----------------------HHHHHHH--------Hh-CC--CCCCHHHHHHHHHHHhc---------
Q 010740 225 CVDAMRFELI----------------------ETLYQDM--------DE-RS--VTPNTVTQNIVLGGYGK--------- 262 (502)
Q Consensus 225 ~~~~~~~~~a----------------------~~~~~~~--------~~-~g--~~~~~~~~~~l~~~~~~--------- 262 (502)
+-..|++++| .+++... .+ .+ +-|...........+-.
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 5555555443 2222221 11 11 22333333333322211
Q ss_pred c----------------C---ChHHHHHHHHHHHHcCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740 263 A----------------G---MFDQMERVLSGMLESATCKPD-----------VWTMNTILSVFANKGQVDMMERWYEKF 312 (502)
Q Consensus 263 ~----------------g---~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (502)
. + .+..|.+.+.+-....-..++ ..+.......+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0 0 122222222221111000111 111122222334578888999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CH
Q 010740 313 RNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA-DT 391 (502)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~ 391 (502)
+... +.+...|-.+..+|....+.++.++.|+...+.+.. ++.+|..-...+.-.+++++|..=|++.+.. .| +.
T Consensus 353 I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~ 428 (606)
T KOG0547|consen 353 IKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENA 428 (606)
T ss_pred HhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Chhhh
Confidence 8765 333334777888899999999999999999998877 8889999999999999999999999998875 34 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH--HH
Q 010740 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR-----PDSE--TF 464 (502)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-----p~~~--~~ 464 (502)
..|.-+.-+..+.+.+++++..|++.++. +|..+.+|+.....+..+++++.|.+.|+..++.... .+.. ..
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 45555666666889999999999998886 6778899999999999999999999999998874211 1222 22
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 465 SIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
-.++..-. .++++.|++++.++++..|..
T Consensus 508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 508 KALLVLQW-KEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred hhHhhhch-hhhHHHHHHHHHHHHccCchH
Confidence 23332223 389999999999999987653
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.4e-09 Score=95.50 Aligned_cols=346 Identities=13% Similarity=0.119 Sum_probs=243.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL 221 (502)
Q Consensus 142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 221 (502)
.+...|....+-=..++++..|..+|++.+... ..+...|-..+.+=.++..+..|..++++.... ++.-...|--.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 355566666666677888999999999999876 577888999999999999999999999998873 33334456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010740 222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQ 301 (502)
Q Consensus 222 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (502)
+..--..|++..|.++|+.-.+. .|+...|+..|+.-.+-+.++.|..+++..+- +-|++..|--....-.+.|.
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCc
Confidence 66667789999999999998875 89999999999999999999999999999864 46899999888888888999
Q ss_pred HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-----------------------------
Q 010740 302 VDMMERWYEKFRNF-GI-DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL----------------------------- 350 (502)
Q Consensus 302 ~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------------------------- 350 (502)
...+..+|+...+. |- ..+...|.++...=.++..++.|.-+|+...+.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 88888888877652 10 111223333333333344455555544443332
Q ss_pred --------------CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH--HHHHHH----H-H---HHhcCC
Q 010740 351 --------------QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK--TFCCLI----N-G---YANAGL 406 (502)
Q Consensus 351 --------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~----~-~---~~~~g~ 406 (502)
.-+.|-.+|--.++.-...|+.+...++|++.+.+ ++|-.. .|...| + + -....+
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11225567777777777788888888888888875 344221 111111 1 1 124677
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHH----HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 010740 407 FHKVISSVRLASKLQIAENVSFYNAVIS----ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 482 (502)
.+.+.++|+..++. +|....++.-+-- ...++.++..|.+++...+ |..|...+|...|..-.+.+++|....
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 78888888777774 4444444443333 2345667777777777665 446777777777777777788888888
Q ss_pred HHHHHHHhhhhcccccc
Q 010740 483 LEQEKLQMLLEASGHWQ 499 (502)
Q Consensus 483 ~~~~~~~~~~~~~~~~~ 499 (502)
++++-+.-.|++--.|.
T Consensus 459 LYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWS 475 (677)
T ss_pred HHHHHHhcChHhhHHHH
Confidence 88887777776665553
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5e-09 Score=95.60 Aligned_cols=260 Identities=11% Similarity=0.021 Sum_probs=157.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740 228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER 307 (502)
Q Consensus 228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 307 (502)
.+++.+..++.+.+.+. .++....+..-|.++...|+..+-..+=.++++.. +....+|-++.--|...|...+|.+
T Consensus 257 ~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred cChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHHH
Confidence 33444444444444333 12233333333334444444444443333443321 2233445555555555556666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 010740 308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM 387 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 387 (502)
.|.+....+ +.-...|-.+...|+-.|..++|+..+....+.-.. ...-+--+.--|.+.+..+.|.++|.+....-
T Consensus 334 y~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 334 YFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred HHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 665554322 122334555555566666666666555554443111 11112223334556677777777777766542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010740 388 KADTKTFCCLINGYANAGLFHKVISSVRLASKL------QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS 461 (502)
Q Consensus 388 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 461 (502)
+-|+..++-+.-.....+.+.+|..+|+..+.. ...-...+++.|..+|.+.+.+++|+..+++...... -+.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~ 489 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDA 489 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-Cch
Confidence 335667777777777788899999999876632 1112456688999999999999999999999998743 388
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
.++.++.-.|...|+++.|++.|.+++...|.+
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999887665
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.3e-11 Score=104.38 Aligned_cols=230 Identities=11% Similarity=0.028 Sum_probs=173.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHH
Q 010740 218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWT-MNTILSVF 296 (502)
Q Consensus 218 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 296 (502)
-+.+.++|.+.|.+.+|++.++.-.+. .|-..||..|-+.|.+..+.+.|+.++.+.++. .|-.+| ..-+.+.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHH
Confidence 356777777888888888877776665 445667777777888888888888888777664 343333 44566777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHH
Q 010740 297 ANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHME 376 (502)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (502)
...++.++|.++|+...+.. +.++.....+...|.-.++.+-|+.++.++.+.|.. +...|+.+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 77788888888888877654 556666666666777778888888888888888887 7888888888888888888888
Q ss_pred HHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 377 YTFEQMHAEGMKADT--KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 377 ~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
..|++....--.|+. ..|..+.......|++..|.+.|+..+..+ ..+...+|.|...-.+.|++++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888887765444543 467778888888888888888888887765 45667788888888888999999888888776
Q ss_pred C
Q 010740 455 K 455 (502)
Q Consensus 455 ~ 455 (502)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 4
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.1e-09 Score=91.82 Aligned_cols=296 Identities=8% Similarity=-0.012 Sum_probs=216.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 010740 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER 271 (502)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (502)
.++...|...+-.+.....++-|+.....+.+++...|+.++|+..|+...-.+.. +........-.+.+.|+++....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 34444455444444333356778888899999999999999999999987765321 23333444445677888888888
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 010740 272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351 (502)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (502)
+...+.... +-+...|-.-+......++++.|+.+-++.++.+ +.+...|-.=...+...|+.++|.-.|...+...
T Consensus 288 L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 288 LMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 888776432 2344445555556667888999999998888754 4455566555667788899999999999888765
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCChHHHHHHHHHHHhcCCCCChHHH
Q 010740 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI-NGYAN-AGLFHKVISSVRLASKLQIAENVSFY 429 (502)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (502)
+. +...|.-|+.+|...|++.+|..+-+..... +..+..++..+. ..|.. ...-++|.++++...... |.-....
T Consensus 365 p~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV 441 (564)
T KOG1174|consen 365 PY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAV 441 (564)
T ss_pred hh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHH
Confidence 43 7889999999999999999988776665543 233555555553 33332 223478888888877643 2335667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740 430 NAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
+.+...|...|..++++.++++... ..||....+.|...+...+.+.+|++.|..++...|.+..
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 7888899999999999999998886 4689999999999999999999999999999998776543
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=1.5e-09 Score=102.99 Aligned_cols=291 Identities=13% Similarity=0.122 Sum_probs=145.4
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA----- 263 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----- 263 (502)
+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+++.+.. |..-|..+..+.+-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 3455555555555554433 12222333344445555555555555555555555322 333333333333111
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 010740 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV-DMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS 342 (502)
Q Consensus 264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 342 (502)
...+...++++++.+. -|.......+.-.+..-..+ ..+..++..+...|+|+ +|+.|-..|....+.+-..+
T Consensus 91 ~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 1344445555555332 12222222221111111112 12334444455555433 34444444444444343444
Q ss_pred HHHHHHHc----C----------CCCChH--HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 010740 343 VMEYMRKL----Q----------FPWTSS--TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAG 405 (502)
Q Consensus 343 ~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 405 (502)
++...... + -+|... ++..+...|-..|++++|++++++.++. .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 44433221 0 112332 3344556666677777777777777665 444 456666667777777
Q ss_pred ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHHHhcCCc
Q 010740 406 LFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS--E----TF--SIMTEAYAKEGMN 477 (502)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~----~~--~~l~~~~~~~g~~ 477 (502)
++++|.+.++.+...+ .-|..+-+-.+..+.++|++++|.+++......+..|-. . .| .-...+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7777777777776664 345555556666667777777777777766655432221 1 22 2335567777777
Q ss_pred HHHHHHHHHHHHhh
Q 010740 478 DKVYALEQEKLQML 491 (502)
Q Consensus 478 ~~A~~~~~~~~~~~ 491 (502)
..|++.|....+..
T Consensus 322 ~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 322 GLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666543
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=1.5e-10 Score=108.25 Aligned_cols=241 Identities=16% Similarity=0.174 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--
Q 010740 250 TVTQNIVLGGYGKAGMFDQMERVLSGMLES----ATC-KPDVWT-MNTILSVFANKGQVDMMERWYEKFRNF-----G-- 316 (502)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-- 316 (502)
..++..+...|...|+++.|+.+++..++. .|. -|...+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666777888888888888887776543 121 123322 334667788888888888888887642 2
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCC-CC-hHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---C
Q 010740 317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL-----QFP-WT-SSTYNNVIEAFSDMGDAKHMEYTFEQMHAE---G 386 (502)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~ 386 (502)
.+--..+++.|..+|.+.|++++|...++...+. +.. +. ...++.++..+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1122446777777888889888888777765432 111 12 234666777888889999999888876532 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 387 MKAD----TKTFCCLINGYANAGLFHKVISSVRLASKLQ-------IAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 387 ~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
..++ ..+++.|...|...|++++|.++++.+.... ..-....++.|...|.+.+.+.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578999999999999999999998776541 1222456778889999999999999999876543
Q ss_pred ----CC-CCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 456 ----HC-RPD-SETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 456 ----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
|. .|+ ..+|..|...|.+.|++++|+++.+.....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 32 233 457889999999999999999999988754
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1.5e-11 Score=117.13 Aligned_cols=274 Identities=15% Similarity=0.142 Sum_probs=166.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCC
Q 010740 131 FEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPN 210 (502)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 210 (502)
+-.+...| +.|+..+|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 13 la~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 13 LALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 33444455 6777777777777777777777777 7777766666667777777777766666655443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 010740 211 CQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMN 290 (502)
Q Consensus 211 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 290 (502)
.|...+|..|..+|...||......+=+ -...+...+...|.-.....++..+.-..+..||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veq------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQ------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHH------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 3666677777777777777655222211 1222333455555555555555544333333444332
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 010740 291 TILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG 370 (502)
Q Consensus 291 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (502)
.+......|-++.+++++..+-.... .. .+..+++-+... ..-..++.+......-.+++.+|..++.+-...|
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~-~~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAW-NA--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccc-cc--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 33334455666666666654432110 01 111123333322 2223333333333222468888888888888888
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740 371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441 (502)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 441 (502)
+.+.|..++.+|++.|...+..-|..|+-+ .++...+..+++-|...|+.|+..|+...+..+.+.|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888888888777777777655 67777788888888888888888888877777776554
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.37 E-value=5.5e-08 Score=90.43 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=45.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740 396 CLINGYANAGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE 474 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 474 (502)
.++..+-..|+++.|..+++.+.++ .|+ +..|-.-.+.+...|++++|..++++.++.+. ||...-..-+....+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHc
Confidence 3444555556666666655555543 222 22333333455555666666666665555432 2333333344444555
Q ss_pred CCcHHHHHHHHHHHHh
Q 010740 475 GMNDKVYALEQEKLQM 490 (502)
Q Consensus 475 g~~~~A~~~~~~~~~~ 490 (502)
++.++|.++.-+-.+.
T Consensus 453 n~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTRE 468 (700)
T ss_pred cccHHHHHHHHHhhhc
Confidence 5555555555444443
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=1.5e-10 Score=110.42 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
-++..++..|+..|+.+.|- +|..|.-.. .+-+...++.++......++.+.+. .|...+|..|..+
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKA 92 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHH
Confidence 45888999999999999998 999887775 5777889999999999999988766 6889999999999
Q ss_pred HHhCCCHHH
Q 010740 189 YCRNSLIDE 197 (502)
Q Consensus 189 ~~~~g~~~~ 197 (502)
|...|++..
T Consensus 93 yr~hGDli~ 101 (1088)
T KOG4318|consen 93 YRIHGDLIL 101 (1088)
T ss_pred HHhccchHH
Confidence 999999655
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=1.9e-09 Score=101.01 Aligned_cols=198 Identities=15% Similarity=0.177 Sum_probs=111.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-H
Q 010740 256 VLGGYGKAGMFDQMERVLSGMLESA----T-CKP-DVWTMNTILSVFANKGQVDMMERWYEKFRNF-----GI-DPET-R 322 (502)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~ 322 (502)
+...|...+++++|..+|+.++... | ..| -..+++.|..+|.+.|++++|...+++..+. +. .+.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 4444555555555555555443210 1 011 1233444444555555555544444443320 10 1111 2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcC---CCC----ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----C--CC
Q 010740 323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQ---FPW----TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG----M--KA 389 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~--~p 389 (502)
.++.+...|...+++++|..++....+.- +.+ -..+++.|...|...|++++|.++|+.++... - .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 34445555666666666666665443321 111 23567777788888888888888877765431 1 11
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 390 -DTKTFCCLINGYANAGLFHKVISSVRLASKL----Q--IAENVSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 390 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
....++.+...|.+.+++++|.++|.+.... | .+....+|..|...|...|++++|+++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2346677778888888888887777654332 2 23346778889999999999999998887765
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=5.7e-08 Score=90.30 Aligned_cols=128 Identities=12% Similarity=0.146 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437 (502)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (502)
+-.++..+-..|+++.|...++....+ .|+.. .|..-.+.+...|++++|..++++..+.+ .+|..+-.--+.-..
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 344677788899999999999998875 67654 56666788999999999999999999876 566665556677778
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHH--HHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 438 KADDLMEMERVYKRMKEKHCRPDSE--------TFSIM--TEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~g~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
++++.++|.++.......|. +.. .|-.+ ..+|.+.|++..|++=|....+..
T Consensus 451 rAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred HccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999998887764 222 23333 457888888888888777766653
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=2.6e-09 Score=86.49 Aligned_cols=200 Identities=13% Similarity=0.063 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
.+...+.-.+...|++..|.+-++...++. +.+..+|..+...|-+.|+.+.|.+.|++..+.. +-+..+.|.....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 445556667889999999999999999974 5566699999999999999999999999999875 5678899999999
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 268 (502)
+|..|++++|...|++....+....-..+|..+.-|..+.|+.+.|...|++..+.... ...+.-.+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 99999999999999999887666666778999999999999999999999999887443 55677788888999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
|...++...... .++..+.-..|+.-...|+-+.+.++=.++..
T Consensus 192 Ar~~~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999986554 37888888888888899999888887776665
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.6e-09 Score=97.40 Aligned_cols=270 Identities=13% Similarity=0.041 Sum_probs=114.2
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
+...+++.+..++++.+.+.. ++....+..-|..+...|+..+-..+=.+|.+.- |..+.+|-++.--|.-.|+..+
T Consensus 254 ~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHH
Confidence 334445555555555444442 3333333333444444444444444444444331 3334444444444444455555
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (502)
|.+.|.+....+ +.=...|-.+...|+-.+.-++|...+....+. ++-...-+--+.--|.+.+..+.|.+.|.+..
T Consensus 331 ARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 331 ARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555554444321 112233444444555555555554444443332 00011111112223444445555555554443
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 010740 278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF------GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ 351 (502)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 351 (502)
.. .+.|+...+-+.-.....+.+.+|..+|+..+.. ....-..+++.|..+|.+.+.+++|+..++......
T Consensus 408 ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 408 AI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred hc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 22 1223344444444444444555555555444310 000112234444445555555555555555444443
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740 352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI 398 (502)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 398 (502)
.. +..++.++.-.|...|+++.|.+.|.+... +.|+..+...++
T Consensus 486 ~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 486 PK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred CC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 33 444455554445555555555555544443 244443333333
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4e-08 Score=84.62 Aligned_cols=163 Identities=14% Similarity=0.090 Sum_probs=91.1
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID 196 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 196 (502)
++...|++++|+..|..+.+.. .++...+..|..++.-.|.+.+|..+-.+.. .++-.-..|.....+.|+-+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHH
Confidence 3445677777777776666543 5555666666666666666666666655432 22333333444444555555
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHH
Q 010740 197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI-VLGGYGKAGMFDQMERVLSG 275 (502)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~ 275 (502)
+-..+.+.+... ..--.+|.......-.+.+|+++|......+ |+-...|. +.-+|.+..-++.+.++++-
T Consensus 139 ~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 139 RILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 555544444321 1222234444444556788888888877652 33333443 34467778888888888888
Q ss_pred HHHcCCCCCCHHHHHHHHHHH
Q 010740 276 MLESATCKPDVWTMNTILSVF 296 (502)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~ 296 (502)
.++.. ..+....|......
T Consensus 211 YL~q~--pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 211 YLRQF--PDSTIAKNLKACNL 229 (557)
T ss_pred HHHhC--CCcHHHHHHHHHHH
Confidence 77652 33344445444333
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4.4e-12 Score=79.61 Aligned_cols=50 Identities=34% Similarity=0.559 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740 424 ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473 (502)
Q Consensus 424 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 473 (502)
||..+||.++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888864
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=1e-07 Score=90.50 Aligned_cols=348 Identities=12% Similarity=0.071 Sum_probs=199.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS 219 (502)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+.-+...|..|.-++..+|+++.+.+.|++....- .-....|..+...|...|.-..|+.+++.......-++|...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34466677777777777777777777777765432 23456666677777777777777777766544211123333333
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHhcc-----------CChHHHHHHHHHHHHcCCCC
Q 010740 220 TLIKACVD-AMRFELIETLYQDMDER--SV--TPNTVTQNIVLGGYGKA-----------GMFDQMERVLSGMLESATCK 283 (502)
Q Consensus 220 ~ll~~~~~-~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 283 (502)
..-..|.+ .+..++++.+-.+.... +. ......|..+.-+|... ....++++.+++.++..+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33333332 34455555444444431 10 01122222222222211 12334455555555444434
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-CC----------
Q 010740 284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL-QF---------- 352 (502)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~---------- 352 (502)
|++..|-++ -|...++.+.|++..++..+.+-..+...|..|.-.+...+++.+|+.+.+..... +.
T Consensus 478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 433333222 23444555555555555555433444455555544444444444444444332211 00
Q ss_pred --------------------------------------------------------------------------------
Q 010740 353 -------------------------------------------------------------------------------- 352 (502)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (502)
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence
Q ss_pred -----CCC------hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740 353 -----PWT------SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ 421 (502)
Q Consensus 353 -----~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (502)
.|+ ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 000 1123344445555566666666666555432 2233455666667778888899999888887764
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 422 IAENVSFYNAVISACIKADDLMEMER--VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
|.++.+..++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+.+.|+.+.|.+.|+-+.++...
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 5567788899999999998888887 88999887644 7889999999999999999999999999887543
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=3.7e-09 Score=85.62 Aligned_cols=202 Identities=13% Similarity=0.054 Sum_probs=150.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740 289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (502)
...+.-.|...|+...|.+-+++.++.. +.+..++..+...|.+.|+.+.|.+-|+...+.... +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4456667778888888888888877754 555667777777888888888888888887777665 67777778888888
Q ss_pred cCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 010740 369 MGDAKHMEYTFEQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER 447 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 447 (502)
.|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.++..++.. +......-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888877643222 23577778777788888888888888887764 4445556677777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 448 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
+++.....+. ++..+.-..|+.-.+.|+-+.+-++-.+.....|..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 8888877765 778887778888888888888877776666665543
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=2.7e-09 Score=95.84 Aligned_cols=219 Identities=10% Similarity=-0.046 Sum_probs=133.0
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010740 228 AMRFELIETLYQDMDERS-VTPN--TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304 (502)
Q Consensus 228 ~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (502)
.+..+.++.-+.+++... ..|+ ...|..+...|...|++++|...|++.++.. +.+...|+.+...+...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHH
Confidence 455566777777776532 1222 3456666777778888888888888776642 3356777778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA 384 (502)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 384 (502)
|...|++..+.. +-+..++..+..++...|++++|.+.|+...+.... +.. .......+...++.++|...|.+...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888888877643 444566777777777788888888888877776443 221 11112223345677888887766543
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 385 EGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL---QI---AENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
.. .|+...+ .......|+...+ +.++.+.+. .. +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 194 ~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22 2222211 2222334554443 233333321 10 1123467777777888888888888888877754
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=5.8e-08 Score=89.31 Aligned_cols=373 Identities=12% Similarity=0.057 Sum_probs=212.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
+..-+..+...|++++|++....+...+ +-+...+..-+-++.+.+++++|+.+.+.-... ..+..-+--=..+..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 3344566678899999999999998874 566778888888999999999999666543211 111111112234455
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------------------
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP---------------------- 248 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---------------------- 248 (502)
+.+..++|+..++-.. +.+..+...-...+.+.+++++|..+|+.+.+++...
T Consensus 91 rlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 7899999999988332 2445566667788899999999999999996654320
Q ss_pred -----CHHHHHHH---HHHHhccCChHHHHHHHHHHHH----c---CCC-----CCCHH-HHHHHHHHHHhcCCHHHHHH
Q 010740 249 -----NTVTQNIV---LGGYGKAGMFDQMERVLSGMLE----S---ATC-----KPDVW-TMNTILSVFANKGQVDMMER 307 (502)
Q Consensus 249 -----~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~----~---~~~-----~~~~~-~~~~l~~~~~~~g~~~~a~~ 307 (502)
...+|..+ .-.+...|++.+|+++++.... . ... ..... .--.+.-++...|+.++|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 11123322 2335567899999999887721 1 000 00111 12234556677899999999
Q ss_pred HHHHHHhCCCCCCHHHH----HHHHHHHHccCcHH-HHHHHH------------HHH-----------------------
Q 010740 308 WYEKFRNFGIDPETRTF----NILIGAYGKKRMYD-KMSSVM------------EYM----------------------- 347 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~-~a~~~~------------~~~----------------------- 347 (502)
+|..++... ++|.... |.|+..-.-..-++ .++..+ ..+
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 998888765 3443221 22211110000000 000000 000
Q ss_pred ------HHcCCCCChHHHHHHHHHHHh--cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH----
Q 010740 348 ------RKLQFPWTSSTYNNVIEAFSD--MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR---- 415 (502)
Q Consensus 348 ------~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~---- 415 (502)
...........+.+++..+.+ ......+.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 000001112233333333222 22355566666655544222223445556666778888888888888
Q ss_pred ----HHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCCcHHHHHHHH
Q 010740 416 ----LASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK--HCRPDSE----TFSIMTEAYAKEGMNDKVYALEQ 485 (502)
Q Consensus 416 ----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~ 485 (502)
.+.+.+.. +.+...++..+.+.++.+.|..++...... .-.+... ++.-++..-.+.|+-++|..+++
T Consensus 405 ~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 405 SWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 44444433 344566677777777777676666665532 0011222 33333334456788888888888
Q ss_pred HHHHhhhhcc
Q 010740 486 EKLQMLLEAS 495 (502)
Q Consensus 486 ~~~~~~~~~~ 495 (502)
+..+..+.+.
T Consensus 483 el~k~n~~d~ 492 (652)
T KOG2376|consen 483 ELVKFNPNDT 492 (652)
T ss_pred HHHHhCCchH
Confidence 8888655544
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=1.3e-11 Score=77.47 Aligned_cols=50 Identities=40% Similarity=0.680 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK 262 (502)
Q Consensus 213 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 262 (502)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777766653
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.4e-08 Score=86.09 Aligned_cols=290 Identities=8% Similarity=-0.046 Sum_probs=214.8
Q ss_pred hcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740 156 KSGQPELARKVFNEMVEE-GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELI 234 (502)
Q Consensus 156 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 234 (502)
-.++...|...+-.+... -++-|......+..++...|+.++|+..|++....+ +-+........-.+.+.|+++..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH
Confidence 334444444444433332 346678889999999999999999999999987642 22333344444556788999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 235 ETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 235 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
..+...+.... .-+...|..-.......++++.|+.+-++.++.. ..+...+-.-...+...|+.++|.--|+....
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 99988887652 1234445554555667788999999999887642 34556666667888899999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH-HHHHh-cCCHhHHHHHHHHHHHcCCCCCH-
Q 010740 315 FGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI-EAFSD-MGDAKHMEYTFEQMHAEGMKADT- 391 (502)
Q Consensus 315 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~m~~~~~~p~~- 391 (502)
.. +.+...|.-|+.+|...|++.+|...-+...+.-.. +..+...+. ..+.- ..--++|.++++...+. .|+.
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 53 567899999999999999999998877766554222 555555552 23322 23357788888887663 6665
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
...+.+...|...|..++++.+++.... ..+|....+.|.+.+...+.+.+|...|......+
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3667778889999999999999998877 46888999999999999999999999999988764
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=1e-08 Score=92.10 Aligned_cols=150 Identities=16% Similarity=0.048 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740 123 QWFQALQVFEMLKEQPFYQPK--EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200 (502)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 200 (502)
+.+.++.-+..+.......|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344444444444433212222 2345566666666677777776666666653 3456666666666666677777776
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (502)
.|++..+.. +.+..+|..+..++...|++++|.+.|+...+... +..........+...++.++|...|.+..
T Consensus 120 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666532 33455566666666666666666666666665422 22111111222334456666666665443
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=1.4e-07 Score=88.25 Aligned_cols=201 Identities=11% Similarity=-0.020 Sum_probs=94.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CC--hHHHHHHHHHHHh
Q 010740 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP-WT--SSTYNNVIEAFSD 368 (502)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~ 368 (502)
+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++........ ++ ...|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344445555555555555555433 333344444555555555555555555554443221 11 1233345555555
Q ss_pred cCCHhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCChHHHHHH--H-HHHHhc-CCCCChHHHHHHHHHHHHcC
Q 010740 369 MGDAKHMEYTFEQMHAEGM-KADTKTF-C--CLINGYANAGLFHKVISS--V-RLASKL-QIAENVSFYNAVISACIKAD 440 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~g 440 (502)
.|++++|..+|++...... .+..... + .++.-+...|..+.+.++ + ...... ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 5666666666655532211 1111111 1 122222233322222222 1 111110 00111122224566677788
Q ss_pred CHHHHHHHHHHHHHCCCC-------C-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 441 DLMEMERVYKRMKEKHCR-------P-DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 441 ~~~~a~~~~~~~~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
+.++|..+++.+...... . ..........++...|++++|.+.+.+++.....
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 888888888887653211 0 1222223334567889999999999998887543
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=1.3e-06 Score=81.54 Aligned_cols=371 Identities=11% Similarity=0.104 Sum_probs=182.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
....+.-+..+|+...-...|+.....-.+.-....|...+......|-++.+..++++.++. ++..-+..|..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 334455566777777888888766554212222346777777777777788888888887743 3444666777777
Q ss_pred hCCCHHHHHHHHHHhhcCCC-----CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 010740 191 RNSLIDEAFVTLNQMKTLPN-----CQPDVYTYSTLIKACVDAMRFEL---IETLYQDMDERSVTPNT--VTQNIVLGGY 260 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~~~~--~~~~~l~~~~ 260 (502)
..+++++|-+.+..+...+. -+.+-..|..+-+..++..+.-. ...+++.+... -+|. ..|..|.+.|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 77888877777766643310 02222333333333333222111 11122222111 1121 2344444444
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--------------------------------------------
Q 010740 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVF-------------------------------------------- 296 (502)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------------- 296 (502)
.+.|.++.|..+|++.++. ..++.-|+.+..+|
T Consensus 259 Ir~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 4444444444444443322 11111111111111
Q ss_pred ----------------------HhcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740 297 ----------------------ANKGQVDMMERWYEKFRNFGIDP------ETRTFNILIGAYGKKRMYDKMSSVMEYMR 348 (502)
Q Consensus 297 ----------------------~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (502)
+..|+..+....|.+..+. +.| -...|..+.+.|-..|+.+.|..+|++..
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 1233344444455444432 111 12345666677777777777777777776
Q ss_pred HcCCCCC---hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHHhcCChH
Q 010740 349 KLQFPWT---SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK----------A-------DTKTFCCLINGYANAGLFH 408 (502)
Q Consensus 349 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~ 408 (502)
+...+.- ..+|..-...=.++.+++.|++++++....--. | +...|..++..--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 6544311 233444444445566677777766665432100 1 1223444444445566666
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCcHHHHHHH
Q 010740 409 KVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS-ETFSIMTEAYAK---EGMNDKVYALE 484 (502)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~ 484 (502)
....+|+.+.+..+-- +.+.-.....+.....++++.++|++-+..=-.|++ ..|+..+..+.+ .-..+.|..+|
T Consensus 495 stk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 6677777666654322 222222222334444555555555554443222332 255555544432 22456666666
Q ss_pred HHHHHhhh
Q 010740 485 QEKLQMLL 492 (502)
Q Consensus 485 ~~~~~~~~ 492 (502)
+++++..|
T Consensus 574 EqaL~~Cp 581 (835)
T KOG2047|consen 574 EQALDGCP 581 (835)
T ss_pred HHHHhcCC
Confidence 66666544
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.21 E-value=3.5e-07 Score=96.77 Aligned_cols=379 Identities=11% Similarity=0.022 Sum_probs=235.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
........+...|++.+|+..+...... ..-..........+...|+++.+..+++.+.......+..........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3344445566778888777654433211 1011122233345566788888888877653221112222334455566
Q ss_pred HhCCCHHHHHHHHHHhhcCCC-C----CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 010740 190 CRNSLIDEAFVTLNQMKTLPN-C----QPD--VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT----VTQNIVLG 258 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~-~----~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~ 258 (502)
...|++++|..++......-. . .+. ......+...+...|+++.|...+++....-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 788999999999987654210 0 111 112223344566789999999999987763111121 23455666
Q ss_pred HHhccCChHHHHHHHHHHHHcCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHH
Q 010740 259 GYGKAGMFDQMERVLSGMLESATC--KP--DVWTMNTILSVFANKGQVDMMERWYEKFRNF----GID--P-ETRTFNIL 327 (502)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 327 (502)
.+...|++++|...+.+......- .+ ....+..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 778899999999999887643211 11 1234556677888999999999998877652 211 1 22334555
Q ss_pred HHHHHccCcHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCCHH--HH--HHH
Q 010740 328 IGAYGKKRMYDKMSSVMEYMRKL----QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG--MKADTK--TF--CCL 397 (502)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~--~~--~~l 397 (502)
...+...|++++|...+.+.... +.......+..+...+...|+.++|.+.+.+..... ...... .. ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66677789999999998877553 111123445556677888999999999998875431 111111 10 112
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 010740 398 INGYANAGLFHKVISSVRLASKLQIAEN---VSFYNAVISACIKADDLMEMERVYKRMKEK----HCRPD-SETFSIMTE 469 (502)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~~~~l~~ 469 (502)
+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... |..++ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2444568899999998776544221111 111346777888999999999999988753 33222 345667778
Q ss_pred HHHhcCCcHHHHHHHHHHHHhh
Q 010740 470 AYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
++.+.|+.++|.+.+.++++..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999874
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=2.3e-06 Score=79.91 Aligned_cols=224 Identities=9% Similarity=0.143 Sum_probs=142.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 010740 263 AGMFDQMERVLSGMLESATCKPD------VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE---TRTFNILIGAYGK 333 (502)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 333 (502)
.|+..+-..++.+.++. +.|. ...|..+...|-..|+++.|..+|++..+...+-- ..+|......=.+
T Consensus 360 e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 35566666666666653 2232 34578888899999999999999999886543322 3345555555566
Q ss_pred cCcHHHHHHHHHHHHHcCCC-----------C------ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010740 334 KRMYDKMSSVMEYMRKLQFP-----------W------TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCC 396 (502)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 396 (502)
..+++.|++++.......-. + +...|...++.-...|-++....+|+++.+..+. ++.....
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 77888888887766432111 1 2345666666667778888889999999887643 3444334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHH-HH-HHHHHH
Q 010740 397 LINGYANAGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKA---DDLMEMERVYKRMKEKHCRPDSE-TF-SIMTEA 470 (502)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~g~~p~~~-~~-~~l~~~ 470 (502)
....+-...-++++.++|++-...=-.|+ ..+|+..+..+.+. -..+.|..+|++..+ |++|... |. -.....
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 44445566667888888876655422333 45667666666542 367888888888888 5665433 22 222222
Q ss_pred HHhcCCcHHHHHHHHHHHHh
Q 010740 471 YAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~ 490 (502)
--+.|....|+.+++++...
T Consensus 596 EEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhc
Confidence 23567777888888876553
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=4.5e-07 Score=84.74 Aligned_cols=199 Identities=12% Similarity=0.076 Sum_probs=92.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHH
Q 010740 255 IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGI-DPET--RTFNILIGAY 331 (502)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~ 331 (502)
.+...+...|++++|.+.+++.++.. +.+...+..+..++...|++++|..++++...... .++. ..|..+...+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34445555666666666666655432 22344455555556666666666666655554321 1111 2233455555
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCC-hHHH-H--HHHHHHHhcCCHhHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHh
Q 010740 332 GKKRMYDKMSSVMEYMRKLQFPWT-SSTY-N--NVIEAFSDMGDAKHMEYT--FEQMHAEGM--KADTKTFCCLINGYAN 403 (502)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~~~~~~a~~~--~~~m~~~~~--~p~~~~~~~l~~~~~~ 403 (502)
...|++++|..+++.......... .... + .++.-+...|....+.+. +........ ............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666665543222111 1111 1 112222223322222111 111110000 0111122245556667
Q ss_pred cCChHHHHHHHHHHHhcCCC---C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 404 AGLFHKVISSVRLASKLQIA---E-----NVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.|+.+.|..+++.+...... - .+...-....++...|+.++|.+.+......
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77788888777766553211 0 1122222333456788999998888877654
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.3e-07 Score=86.16 Aligned_cols=368 Identities=13% Similarity=0.076 Sum_probs=242.4
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELYTALLAAYCRNSLI 195 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 195 (502)
.....|+++.|+.+|....... ++|...|..-..+|++.|++++|++=-.+-++. .|+ ...|.....++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 3457899999999999988875 678889999999999999999998877777765 454 67899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhC---CCCCCHHHHHHHHHHHhc-------
Q 010740 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELI---ETLYQDMDER---SVTPNTVTQNIVLGGYGK------- 262 (502)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~---g~~~~~~~~~~l~~~~~~------- 262 (502)
++|+.-|.+-.+.. +.+...++.+..++.......+. -.++..+... ........|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999987743 56677788888777211000000 0011111000 000011223333222211
Q ss_pred ---cCChHHHHHHHHHHH----HcC-------CCCC----------------------CHHHHHHHHHHHHhcCCHHHHH
Q 010740 263 ---AGMFDQMERVLSGML----ESA-------TCKP----------------------DVWTMNTILSVFANKGQVDMME 306 (502)
Q Consensus 263 ---~g~~~~a~~~~~~~~----~~~-------~~~~----------------------~~~~~~~l~~~~~~~g~~~~a~ 306 (502)
-.++..+.-++.... ... +..| -..-...+.++..+..+++.++
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111111111111000 000 0011 1123456777788888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH-------HHHHhcCCHhHHHHHH
Q 010740 307 RWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI-------EAFSDMGDAKHMEYTF 379 (502)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~ 379 (502)
+-+....+.. -+..-++....+|...|.+..+...-....+.|.. ...-|+.+. .+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9999888754 55556677777888889888888777777666554 333333333 3555667888888888
Q ss_pred HHHHHcCCCCCHHH-------------------------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740 380 EQMHAEGMKADTKT-------------------------FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS 434 (502)
Q Consensus 380 ~~m~~~~~~p~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 434 (502)
++.......|+..+ ...-...+.+.|++..|+..|.++++.. +.|...|..-.-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 88766544443322 1112345677899999999999998886 778899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS 495 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 495 (502)
+|.+.|.+..|++-.+..++.+. +....|.-=..++.-..++++|.+.|++.++..|...
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 99999999999998888887621 1333444445566667789999999999998876543
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=8.7e-08 Score=80.66 Aligned_cols=329 Identities=12% Similarity=0.090 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA-LLAA 188 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 188 (502)
.+..++..+.+..++++|++++....++. +.+......|..+|....++..|-..++++-.. .|...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 36677888899999999999999887764 447778899999999999999999999999865 566666643 3567
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA--CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF 266 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 266 (502)
+.+.+.+.+|+.+...|... ++...-..-+.+ ....+++..+..++++....| +..+.+...-...+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 77899999999999888652 333222222222 345788888888888876432 455556666667789999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHHH--------HH
Q 010740 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP-------------ETRT--------FN 325 (502)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~~--------~~ 325 (502)
+.|.+-|+...+-.|..| ...|+..+ +..+.|+++.|++...+++++|++. |+.. -+
T Consensus 161 EaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 999999999988888765 34566544 5567899999999999999998762 2111 12
Q ss_pred HHHH-------HHHccCcHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740 326 ILIG-------AYGKKRMYDKMSSVMEYMRKL-QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397 (502)
Q Consensus 326 ~l~~-------~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 397 (502)
.++. .+.+.|+++.|.+-+-.|.-. ....|++|...+.-.-. .+++.+..+-+.-+.... +....||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 2333 345667888887777666432 23346677666543322 344555555555555543 2345788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 010740 398 INGYANAGLFHKVISSVRLASKLQI-AENVSFYNAVISACIK-ADDLMEMERVYKRMKE 454 (502)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 454 (502)
+-.||+..-++.|-.++.+-..... -.+...|+ |++++.. .-..++|.+-++.+..
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888877764222211 12344444 3444433 3466777766665543
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=6.5e-07 Score=77.39 Aligned_cols=150 Identities=12% Similarity=0.044 Sum_probs=78.0
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID 196 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 196 (502)
.+...+++..|+.+++.....+. .....+-..+..++...|++++|...+.-+.... .++...+..|.-++.-.|.+.
T Consensus 31 dfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 34455666666666665543321 1111233344455566677777777776665543 455566666666666666666
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
+|..+-.+..+ +...-..|+....+.++-++...+.+.+.+. ..---.|.......-.+.+|.+++..+
T Consensus 109 eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 109 EAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554422 2222333444445556655555555444332 122223333333344566677777766
Q ss_pred HHc
Q 010740 277 LES 279 (502)
Q Consensus 277 ~~~ 279 (502)
+..
T Consensus 178 L~d 180 (557)
T KOG3785|consen 178 LQD 180 (557)
T ss_pred Hhc
Confidence 554
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=2.1e-06 Score=81.88 Aligned_cols=333 Identities=13% Similarity=0.056 Sum_probs=214.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT---------------- 178 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------- 178 (502)
--.+...|+++.+.+.|+..... .-...+.|+.+...+...|.-..|..+++.-....-.|+
T Consensus 330 t~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l 407 (799)
T KOG4162|consen 330 TFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence 34566778999998888876543 122344566666666666665555555554443211121
Q ss_pred -------------------------HHHHHHHHHHHHhC-----------CCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 179 -------------------------PELYTALLAAYCRN-----------SLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 179 -------------------------~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
...|..+.-+|... ....++++.+++..+.+...|+...| +.
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--la 485 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LA 485 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HH
Confidence 12222222222211 12345667777776655444444444 44
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC------------------
Q 010740 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP------------------ 284 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------------ 284 (502)
--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..++..|..-
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 55677889999999999999887777899999999999999999999999998877644311
Q ss_pred CHHHHHHHHHHHHhc------C-----------------CHHHHHHHHHHHH--------hCC----CC-------CC--
Q 010740 285 DVWTMNTILSVFANK------G-----------------QVDMMERWYEKFR--------NFG----ID-------PE-- 320 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~------g-----------------~~~~a~~~~~~~~--------~~~----~~-------~~-- 320 (502)
-..|...++..+-.. + +..++.+....+. ..| ++ |+
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 012223333222200 0 0111111111110 001 00 11
Q ss_pred ----HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHH
Q 010740 321 ----TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-TKTFC 395 (502)
Q Consensus 321 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~ 395 (502)
...|......+.+.+..++|..-+.+..+.... ....|......+...|.+++|.+.|...... .|+ .....
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~ 722 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHH
Confidence 112334555666777777887776666665432 6667777778888899999999999998875 454 45888
Q ss_pred HHHHHHHhcCChHHHHH--HHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 396 CLINGYANAGLFHKVIS--SVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
++...+.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|+...+.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999888887 999999987 778999999999999999999999999988764
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.6e-07 Score=89.66 Aligned_cols=321 Identities=12% Similarity=0.077 Sum_probs=208.8
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-------CCCCHHHHHHHHHH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE-G-------IEPTPELYTALLAA 188 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-------~~~~~~~~~~l~~~ 188 (502)
-|+..|+.+.|.+-.+.++. ...|..+..+|.+..+++-|.-.+..|... | .+.+...-......
T Consensus 737 fyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 35667999999988887764 458999999999999999888877777532 1 11111222233344
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 268 (502)
....|.+++|..+|++.++ |..|=..|...|.+++|.++-+.=.+- . =..||......+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHH
Confidence 5677999999999999876 444556677889999999886653222 2 23567777777777888888
Q ss_pred HHHHHHHH----------HHcC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740 269 MERVLSGM----------LESA--------TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA 330 (502)
Q Consensus 269 a~~~~~~~----------~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 330 (502)
|++.|++. +... .-..|...|.......-..|+.+.|+.+|..... |-.+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88887643 1110 0122444555555556667777777777766553 4556666
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 010740 331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL---- 406 (502)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---- 406 (502)
.|-.|+.++|-++-++-. |....-.+.+.|...|++.+|..+|.+... |...|+.|-..+-
T Consensus 948 ~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred EeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHH
Confidence 677788888877765432 556677888999999999999999987653 3334443333322
Q ss_pred -----------hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCC--CCCHHHHH
Q 010740 407 -----------FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK--------RMKEKHC--RPDSETFS 465 (502)
Q Consensus 407 -----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~g~--~p~~~~~~ 465 (502)
.-.|-.+|+ +.|. -+...+..|-+.|.+.+|+++-= +++..++ .-|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyE---e~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYE---ELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHH---Hcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 222222332 2221 12234556778888888876532 1222223 34677788
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHH
Q 010740 466 IMTEAYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~ 489 (502)
--.+.++...++++|+.++-.+..
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 778888889999999888766554
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.1e-06 Score=79.34 Aligned_cols=331 Identities=12% Similarity=0.052 Sum_probs=202.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC 225 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 225 (502)
..-+=++.+...|++++|.+...+++..+ +-+...+..-+-++++.+++++|+.+.+.-.. ...+...+..-..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHH
Confidence 34445677788999999999999999876 66778888888899999999999976655332 112222222334455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC------------------------
Q 010740 226 VDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT------------------------ 281 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------------ 281 (502)
.+.+..++|+..++-.... |..+...-...+.+.|++++|+++|+.+.+...
T Consensus 90 Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 6789999999998832222 344667777889999999999999998854321
Q ss_pred ---CCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCC-------CCCCH------H-HHHHHHHHHHccCcHHHHH
Q 010740 282 ---CKPDVWTMNTI---LSVFANKGQVDMMERWYEKFRNFG-------IDPET------R-TFNILIGAYGKKRMYDKMS 341 (502)
Q Consensus 282 ---~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~l~~~~~~~g~~~~a~ 341 (502)
..| ..+|..+ .-.+...|++.+|+++++.....+ -.-+. . .-..|.-.+-..|+.++|.
T Consensus 166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 111 1123222 334567899999999998883211 01111 1 1123444566789999999
Q ss_pred HHHHHHHHcCCCCChH----HHHHHHHHHHhcCCHh----------------HHHHHH----------------------
Q 010740 342 SVMEYMRKLQFPWTSS----TYNNVIEAFSDMGDAK----------------HMEYTF---------------------- 379 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~----------------~a~~~~---------------------- 379 (502)
.++..+++.... |.. .-|.|+..-....-.+ .++.-|
T Consensus 245 ~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 245 SIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999887654 332 2222221111000000 000000
Q ss_pred ---HHHHHc--CCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHH-
Q 010740 380 ---EQMHAE--GMKADTKTFCCLINGYAN--AGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYK- 450 (502)
Q Consensus 380 ---~~m~~~--~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~- 450 (502)
++.... +..|. ..+.+++..+.. ......+.+++...-+.. +.+ ..+.-..+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 000000 11222 234444443332 223566677666665543 333 4455566777888999999999999
Q ss_pred -------HHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 451 -------RMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 451 -------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.+.+.+.. +.+...++..+.+.++.+.|..++.++++-
T Consensus 402 ~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 402 FLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred HhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 55554444 445556677788888888888888887764
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=2.5e-06 Score=73.54 Aligned_cols=212 Identities=10% Similarity=0.013 Sum_probs=111.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY-TALLAAY 189 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~ 189 (502)
-..+-..+..+|++.+|+.-|..+.+.+ +.+-.++..-...|...|+-..|+.=+.+.++. .||-..- ..-...+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3344455555566666666666555432 222224444445555555555555555555544 3443221 1223344
Q ss_pred HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 269 (502)
.++|.+++|..-|+.+... .|+..+ ...++.+.--.++-.. ....+..+.-.|+...|
T Consensus 117 lK~Gele~A~~DF~~vl~~---~~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH---EPSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhcccHHHHHHHHHHHHhc---CCCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence 4555555555555555543 222211 1111111111111111 12223345556777777
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740 270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349 (502)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (502)
+..+..+++.. +-+...+..-..+|...|++..|+.-++..-+.. ..+..++-.+-..+...|+.+.++....+..+
T Consensus 175 i~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 77777776632 3466666667777777777777777666665543 34455555666667777777777777777666
Q ss_pred cC
Q 010740 350 LQ 351 (502)
Q Consensus 350 ~~ 351 (502)
.+
T Consensus 252 ld 253 (504)
T KOG0624|consen 252 LD 253 (504)
T ss_pred cC
Confidence 53
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=5.1e-06 Score=71.74 Aligned_cols=270 Identities=13% Similarity=0.081 Sum_probs=187.4
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----H-----------
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP----E----------- 180 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~----------- 180 (502)
.|...|+-..|+.-+..+.+ .+||-. +-..-...+.+.|.++.|..=|+..++.. |+. .
T Consensus 81 ~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 81 VYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred HHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHH
Confidence 35556777777777777766 366644 33345577889999999999999999874 422 1
Q ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740 181 -LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259 (502)
Q Consensus 181 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 259 (502)
.....+..+...|+...|+++...+.+. .+.|...|..-..+|...|++..|+.-++...+..- .+..++..+-..
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L 232 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQL 232 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHH
Confidence 1233445556678888888888888874 367888888888888888888888887777666533 366677777788
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHH
Q 010740 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDK 339 (502)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (502)
+...|+.+.++..+++.++ +.||...+-..- ..+.+..+.++.|.+ ....++|.+
T Consensus 233 ~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~Y------KklkKv~K~les~e~----------------~ie~~~~t~ 287 (504)
T KOG0624|consen 233 LYTVGDAENSLKEIRECLK---LDPDHKLCFPFY------KKLKKVVKSLESAEQ----------------AIEEKHWTE 287 (504)
T ss_pred HHhhhhHHHHHHHHHHHHc---cCcchhhHHHHH------HHHHHHHHHHHHHHH----------------HHhhhhHHH
Confidence 8888888888888888765 356544322211 112223333333322 234577778
Q ss_pred HHHHHHHHHHcCCCCChHHH---HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 010740 340 MSSVMEYMRKLQFPWTSSTY---NNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAGLFHKVISSVR 415 (502)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (502)
+++-.+...+.........| ..+-.++...+++.+|+..-.+..+. .|| ..++.--..+|.-...++.|+.-|+
T Consensus 288 cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 288 CLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88877777776554333333 34455666778999999999888874 455 7788888899999999999999999
Q ss_pred HHHhcC
Q 010740 416 LASKLQ 421 (502)
Q Consensus 416 ~~~~~~ 421 (502)
.+.+.+
T Consensus 366 ~A~e~n 371 (504)
T KOG0624|consen 366 KALELN 371 (504)
T ss_pred HHHhcC
Confidence 998865
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=7.5e-07 Score=75.18 Aligned_cols=358 Identities=9% Similarity=-0.005 Sum_probs=219.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMK-LLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA--YC 190 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 190 (502)
+.-++-...++..|.++|+.+... .|...-|.. -.+.+.+.+.+..|+.+...|... ++...-..-+.+ ..
T Consensus 50 LgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 50 LGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence 344566788999999999998874 555555542 356777889999999999988743 333222222333 23
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME 270 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 270 (502)
..+++..+..++++.... -+..+.+...-...+.|+++.|.+-|+...+-|---....|+..+ +..+.|+++.|+
T Consensus 124 se~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasAL 198 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASAL 198 (459)
T ss_pred ccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHH
Confidence 467888888888887642 344455555555678999999999999988754333556676555 556778999999
Q ss_pred HHHHHHHHcCCCCCC----------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH
Q 010740 271 RVLSGMLESATCKPD----------------------------VWTMNTILSVFANKGQVDMMERWYEKFRNF-GIDPET 321 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 321 (502)
+...+++++ |++.. +..+|.-...+.+.|+++.|.+-+..|-.+ ....|+
T Consensus 199 k~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 199 KHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred HHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 999999876 44421 122444445567888999999888877543 224566
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Q 010740 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KADTKTFCCLING 400 (502)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~ 400 (502)
.|...+.-.-. .+++.+..+-+.-+...++ -...||..++-.||+..-++.|-.++.+=...-. -.+...|+ |+.+
T Consensus 278 vTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLda 354 (459)
T KOG4340|consen 278 VTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDA 354 (459)
T ss_pred hhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHH
Confidence 77666543322 3455555555566666655 3668899999999999999988888765221111 11233333 3444
Q ss_pred HH-hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740 401 YA-NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM---EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476 (502)
Q Consensus 401 ~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 476 (502)
+. ..-..+++.+-++.+.+.- .........-+.--...++-. .+++-+++..+. -.....+-...|.+..+
T Consensus 355 LIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLED 429 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccc
Confidence 43 4456777777666544321 111111111111111222222 222333333332 12223333456778899
Q ss_pred cHHHHHHHHHHHHhh
Q 010740 477 NDKVYALEQEKLQML 491 (502)
Q Consensus 477 ~~~A~~~~~~~~~~~ 491 (502)
+..+.++|....+.-
T Consensus 430 y~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 430 YPMVEKIFRKSVEFC 444 (459)
T ss_pred cHHHHHHHHHHHhhh
Confidence 999999998877654
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=2.3e-08 Score=88.44 Aligned_cols=253 Identities=9% Similarity=0.104 Sum_probs=146.3
Q ss_pred HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010740 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265 (502)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 265 (502)
++-+.-.|.+..++.-.+ ..... -..+......+.+++...|+++.+. .++.... .|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 345556788888886665 32221 1123334555677777788766543 3433332 5666666666655554455
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 010740 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVME 345 (502)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (502)
-+.+..-+++.+.......+..........+...|++++|++++... .+.......+..|.+.++.+.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555444332211122233333334556678888888777532 455666677778888888888888888
Q ss_pred HHHHcCCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740 346 YMRKLQFPWTSSTYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ 421 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (502)
.|.+.+ +..+...++.++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+
T Consensus 156 ~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 877653 22344445554433 23577788888886554 45677777777777778888888888777776554
Q ss_pred CCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHC
Q 010740 422 IAENVSFYNAVISACIKADDL-MEMERVYKRMKEK 455 (502)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 455 (502)
+-+..+...++.+....|+. +.+.+++.++...
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 44555666666666666766 5566777777654
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=7.1e-06 Score=86.96 Aligned_cols=308 Identities=9% Similarity=-0.032 Sum_probs=200.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCC----H
Q 010740 148 MKLLVLLGKSGQPELARKVFNEMVEEGI------EPT--PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD----V 215 (502)
Q Consensus 148 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 215 (502)
......+...|++++|..+++.....-- .+. ......+...+...|++++|...+++...... ..+ .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~ 491 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRI 491 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHH
Confidence 4445566788999999999988754310 111 12223334556689999999999998765211 112 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCC--C-
Q 010740 216 YTYSTLIKACVDAMRFELIETLYQDMDER----SV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES---ATCK--P- 284 (502)
Q Consensus 216 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~--~- 284 (502)
...+.+...+...|++++|...+.+.... |. .....++..+...+...|+++.|...+++.... .+.. +
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 34556667778899999999999887642 11 111234556677788999999999998886542 1111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-ChHHH
Q 010740 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFG--IDP--ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW-TSSTY 359 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~ 359 (502)
....+..+...+...|++++|...+++..... ..+ ....+..+...+...|+++.|.+.+.......... ....+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 22344556667788899999999998876531 112 23344556667788999999999988875531111 11111
Q ss_pred -----HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-Ch
Q 010740 360 -----NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT---KTFCCLINGYANAGLFHKVISSVRLASKL----QIAE-NV 426 (502)
Q Consensus 360 -----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 426 (502)
...+..+...|+.+.|...+............ ..+..+..++...|++++|...++.+... +... ..
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11224445678999999988775542211111 12346677888999999999999877654 2222 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 427 SFYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
.+...+..++.+.|+.++|...+.+..+..
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 456677788899999999999999998763
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.5e-07 Score=85.10 Aligned_cols=254 Identities=10% Similarity=0.063 Sum_probs=176.1
Q ss_pred HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740 188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD 267 (502)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 267 (502)
-+.+.|++.+|.-.|+...+.+ +.+...|..|.......++-..|+..+++..+.... |......|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3456777888888887777643 566777887777777777777888888877776433 6677777777788888777
Q ss_pred HHHHHHHHHHHcCC-----CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHccCcHHH
Q 010740 268 QMERVLSGMLESAT-----CK--PDVWTMNTILSVFANKGQVDMMERWYEKF-RNFGIDPETRTFNILIGAYGKKRMYDK 339 (502)
Q Consensus 268 ~a~~~~~~~~~~~~-----~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (502)
.|++.++.-+.... .. ++...-.. ........+....++|-++ ...+..+|..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 88887777654320 00 00000000 1122233334445555444 344445777888888888888899999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLAS 418 (502)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (502)
|.+-|+.+....+. |..+||.|...++...+.++|+..|++.++. +|..+ ....|.-+|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999988887766 8889999999999999999999999998874 66653 56678888999999999988876554
Q ss_pred hcC---------CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 010740 419 KLQ---------IAENVSFYNAVISACIKADDLMEMERVY 449 (502)
Q Consensus 419 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 449 (502)
... ..++..+|..|=.++.-.++.|-+.+..
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 431 1224567888877787788877655543
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=1.7e-08 Score=89.33 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=82.4
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hc
Q 010740 258 GGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY----GK 333 (502)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 333 (502)
..+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .| .+...+..++ ..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhC
Confidence 3445556666666555422 244455555666666666666666666665432 22 2333333332 22
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHH
Q 010740 334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF-HKVIS 412 (502)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~ 412 (502)
.+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +-+..++..++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 33566777777776554 33466666667777777777777777777665543 22455666666666666665 45556
Q ss_pred HHHHHHhc
Q 010740 413 SVRLASKL 420 (502)
Q Consensus 413 ~~~~~~~~ 420 (502)
++.++...
T Consensus 258 ~l~qL~~~ 265 (290)
T PF04733_consen 258 YLSQLKQS 265 (290)
T ss_dssp HHHHCHHH
T ss_pred HHHHHHHh
Confidence 66666553
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.2e-07 Score=87.21 Aligned_cols=251 Identities=10% Similarity=0.028 Sum_probs=190.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740 224 ACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD 303 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (502)
-+.+.|++.+|.-.|+..++.... +...|..|.......++-..|+.-+.+.++-. +.+......|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 456789999999999999888554 78899999999999999999999999987642 346778888889999999999
Q ss_pred HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHhH
Q 010740 304 MMERWYEKFRNFGID--------PETRTFNILIGAYGKKRMYDKMSSVMEYMRK-LQFPWTSSTYNNVIEAFSDMGDAKH 374 (502)
Q Consensus 304 ~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 374 (502)
+|++.++.-+....+ ++...-.. ..+.....+....++|-++.. .+..+|..+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887653311 00000000 122233444555556655544 4445788999999999999999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740 375 MEYTFEQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRM 452 (502)
Q Consensus 375 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 452 (502)
|...|+..+.. +| |..+|+.|...++...+.++|+..|+++++. .|+ +.+...|.-.|...|.+++|.+.|=..
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999985 45 5678999999999999999999999999985 454 555566888899999999999988765
Q ss_pred HHC---------CCCCCHHHHHHHHHHHHhcCCcHHHHHH
Q 010740 453 KEK---------HCRPDSETFSIMTEAYAKEGMNDKVYAL 483 (502)
Q Consensus 453 ~~~---------g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (502)
+.. +..++...|.+|=.++.-.++.|-+.+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 532 2233567898888888888888865544
No 99
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=1.9e-06 Score=77.52 Aligned_cols=204 Identities=7% Similarity=-0.060 Sum_probs=91.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcH--HH
Q 010740 263 AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG-QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY--DK 339 (502)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 339 (502)
.++.++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+. ++
T Consensus 50 ~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 344444455444444321 112223333333333333 3445555555544432 33333444333333333331 34
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----hHHHHH
Q 010740 340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA---GL----FHKVIS 412 (502)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~----~~~a~~ 412 (502)
++.+++.+.+.+.. +..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |. .++.++
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 45555555554443 5555555555555555555555555555554322 233333333333222 11 134444
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740 413 SVRLASKLQIAENVSFYNAVISACIKA----DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473 (502)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 473 (502)
+...++... +-|...|+.+...+... +...+|.+.+.+..+.++. +......|+..|+.
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 444444443 44556666665555552 2334465666555543322 45555566666654
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=2.5e-06 Score=80.86 Aligned_cols=221 Identities=10% Similarity=0.073 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010740 177 PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIV 256 (502)
Q Consensus 177 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 256 (502)
|--..-..+...+...|-...|..+|+++.. |..++.+|...|+..+|..+..+..++ +||...|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3334445667788888889999999888753 666888888889888888888887773 6788888888
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 010740 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336 (502)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 336 (502)
.+......-+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 88887777888888888776332 12222223345788889988888776654 5556778778888888899
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740 337 YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRL 416 (502)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (502)
++.+.+.|.......+. +...||.+-.+|.+.++..+|...+++..+.+ .-+...|...+......|.+++|.+.+..
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999888888776554 67889999999999999999999999888876 44556677777778888999999998887
Q ss_pred HHhc
Q 010740 417 ASKL 420 (502)
Q Consensus 417 ~~~~ 420 (502)
+.+.
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 7654
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.3e-05 Score=78.76 Aligned_cols=303 Identities=11% Similarity=0.161 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEG--IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST 220 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
|.+.....+.++...+-+.+..++++++.-.. +.-+...-|.|+-...+. +.....++.+++...+ .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD--a~~------ 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--APD------ 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC--chh------
Confidence 45556666677777777777777777765331 111223334444444333 3345555655554422 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC---------------------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740 221 LIKACVDAMRFELIETLYQDMDERSV---------------------TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES 279 (502)
Q Consensus 221 ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 279 (502)
+...+...+-+++|..+|+...-.+- --....|..+..+-.+.|.+.+|.+-|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 22334444455555555554321100 002233444444444444444444333222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHH
Q 010740 280 ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY 359 (502)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (502)
.|+..|..++..+.+.|.|++..+++...++..-.|.. -+.|+-+|++.++..+..+++. -|+....
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANI 1197 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhH
Confidence 13334444444444444444444444433333222222 2234444444444333332221 1233333
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 010740 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439 (502)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 439 (502)
..+.+-|...|.++.|.-+|.. ..-|..|...+...|+++.|...-++ ..+..+|..+..+|...
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhch
Confidence 3333334444444444333322 12244444555555555555443332 23455666666666655
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 440 g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
+.+.-| +|...++-....-..-+++.|-..|-+++.+.+++..+.+
T Consensus 1263 ~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1263 EEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred hhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 544322 3333333344555666777777777777777777766654
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=3.2e-06 Score=85.65 Aligned_cols=238 Identities=10% Similarity=0.059 Sum_probs=190.9
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010740 247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP---DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRT 323 (502)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 323 (502)
+-....|-..|......++.++|.+++++.+..-++.- -...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 33566788888899999999999999999987543322 2346778888888888889999999999874 344567
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 010740 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD---TKTFCCLING 400 (502)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~ 400 (502)
|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.++.+-+.|..++.+..+. -|- .....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 89999999999999999999999988754 37889999999999999999999999998875 343 2344455556
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcH
Q 010740 401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS--ETFSIMTEAYAKEGMND 478 (502)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~ 478 (502)
-.+.|+.+.+..+|+..... .|-....|+.+++.-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 67899999999999988775 4667889999999999999999999999999999887753 36677777667778876
Q ss_pred HHHHHHHHHHHh
Q 010740 479 KVYALEQEKLQM 490 (502)
Q Consensus 479 ~A~~~~~~~~~~ 490 (502)
.+..+=.++.+.
T Consensus 1689 ~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1689 NVEYVKARAKEY 1700 (1710)
T ss_pred hHHHHHHHHHHH
Confidence 666655555543
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=3.1e-06 Score=85.78 Aligned_cols=207 Identities=10% Similarity=0.042 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHH
Q 010740 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEE-GIE---PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYT 217 (502)
Q Consensus 142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 217 (502)
-+...|...|......++.++|++++++++.. ++. --...|.++++.-...|.-+...++|+++.+. -..-..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHH
Confidence 34456777777777777777777777776643 111 11245666666655666666667777776653 112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010740 218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFA 297 (502)
Q Consensus 218 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (502)
|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+.++...-.-......-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 666667777777777777777777654 2235566667777777777767777777666553211112333444445555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 010740 298 NKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP 353 (502)
Q Consensus 298 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (502)
+.|+.+.+..+|+..+... +.-...|+.+++.-.+.|+.+.++.+|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 6666666666666665432 444556666666666666666666666666666554
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=1e-06 Score=83.45 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=177.7
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010740 247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNI 326 (502)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 326 (502)
+|-...-..+...+...|-...|..++++.. .|..++.+|...|+.++|..+..+..+ -+|+...|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 3444445567778888999999999998772 477788999999999999999988876 3789999999
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740 327 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406 (502)
Q Consensus 327 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 406 (502)
+.+......-+++|+++.+..... .-..+.....+.++++++.+.|+.-.+.. .....+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 998888888889999998865443 22222333345788999999998877653 3356788888888889999
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010740 407 FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486 (502)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (502)
++.|.+.|....... +.+...||.+-.+|.+.|+..+|...+.+..+.+.. +...|...+-...+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999998887754 567788999999999999999999999999887633 667788888888999999999999999
Q ss_pred HHHhh
Q 010740 487 KLQML 491 (502)
Q Consensus 487 ~~~~~ 491 (502)
+..+.
T Consensus 613 ll~~~ 617 (777)
T KOG1128|consen 613 LLDLR 617 (777)
T ss_pred HHHhh
Confidence 88764
No 105
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=5.6e-06 Score=74.44 Aligned_cols=136 Identities=9% Similarity=-0.066 Sum_probs=82.4
Q ss_pred HhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH--
Q 010740 119 VLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSG-QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI-- 195 (502)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 195 (502)
...++.++|+.+++.+.+.. +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|+.
T Consensus 48 ~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 34567777777777777653 334446666666666666 4677777777776654 44555666555555555542
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010740 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260 (502)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 260 (502)
++++.+++++.+.+ +-+..+|+...-++...|+++++++.++++++.++. |...|+.....+
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 55666666666542 456666666666666666677777777776666544 455555544433
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.9e-06 Score=78.85 Aligned_cols=339 Identities=16% Similarity=0.112 Sum_probs=220.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcC
Q 010740 151 LVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKACVDAM 229 (502)
Q Consensus 151 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 229 (502)
..+....|+++.|...|-+.+... ++|...|..-..+|...|++++|++=-.+..+. .|+ ...|+....++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcc
Confidence 356678899999999999999886 568899999999999999999999888877764 454 457999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH---HHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcC----
Q 010740 230 RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM---ERVLSGMLESAT--CKPDVWTMNTILSVFANKG---- 300 (502)
Q Consensus 230 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g---- 300 (502)
++++|+.-|.+-++... .+...++.+..++.......+. -.++..+..... .......|..++..+-+.-
T Consensus 85 ~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred cHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999999887633 3667777777776211000000 001111100000 0001112333332221110
Q ss_pred ---CHHHHHHHHHHHHh--------CC-------CCC----------------------CHHHHHHHHHHHHccCcHHHH
Q 010740 301 ---QVDMMERWYEKFRN--------FG-------IDP----------------------ETRTFNILIGAYGKKRMYDKM 340 (502)
Q Consensus 301 ---~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~~a 340 (502)
..+......-.+.. .+ ..| -..-...+.++..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01111111111110 00 011 011235567777778889999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHhcCChHHHHHHH
Q 010740 341 SSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA--D----TKTFCCLINGYANAGLFHKVISSV 414 (502)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~----~~~~~~l~~~~~~~g~~~~a~~~~ 414 (502)
.+-+....+.. .+..-++....+|...|.+..+...-....+.|-.. + ...+..+..+|.+.++++.++..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99998888876 377777888888999998888777776666654211 1 112233445666778889999888
Q ss_pred HHHHhcCCCCChHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740 415 RLASKLQIAENVSF-------------------------YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE 469 (502)
Q Consensus 415 ~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 469 (502)
.........|+... ...-...+.+.|++..|++.|.+++.... -|...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence 87655433332111 11124556788999999999999999863 37889999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHhhhhcccc
Q 010740 470 AYAKEGMNDKVYALEQEKLQMLLEASGH 497 (502)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 497 (502)
+|.+.|.+..|++-.+..+++.|.....
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999988887665443
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.85 E-value=5.4e-06 Score=78.66 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=46.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010740 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS 341 (502)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (502)
....|.+|+.+++.+..+ +....-|..+...|...|+++.|.++|.+.. .++-.|..|.+.|+|+.|.
T Consensus 744 ~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 334444555555444221 1122334445555555555555555554321 2334455555555555555
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHH
Q 010740 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 379 (502)
++-.+. .|.......|-.-..-+-.+|++.+|.++|
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 543322 222223344444444444555555555444
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=5.3e-05 Score=74.73 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=29.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ 159 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 159 (502)
+....-++++..--+.+++...+.| .-|..++|+|...|...++
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNN 887 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCC
Confidence 4444556677777777777777777 5577788888777765443
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=3.8e-06 Score=82.31 Aligned_cols=367 Identities=11% Similarity=-0.017 Sum_probs=211.9
Q ss_pred hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010740 122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201 (502)
Q Consensus 122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 201 (502)
.+...|+..|-...... +.=...|..|...|+...+...|.+.|+...+.+ .-+...+......|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34666666665555432 2224488999999998889999999999998775 45677888899999999999999998
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 010740 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT 281 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 281 (502)
.-...+......-...|....-.|.+.++...+..-|+...+..+. |...|..+..+|...|++..|.++|.+...
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--- 624 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--- 624 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh---
Confidence 5444332111111223444444567788889999999988877554 888999999999999999999999988754
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCcHH-------HHHHHHHHH
Q 010740 282 CKPDVWT-MNTILSVFANKGQVDMMERWYEKFRNFG------IDPETRTFNILIGAYGKKRMYD-------KMSSVMEYM 347 (502)
Q Consensus 282 ~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~-------~a~~~~~~~ 347 (502)
+.|+... ---..-.-+..|.+.++...+....... ..--..++-.+...+.-.|-.. ++.+.|.-.
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3444322 1122334567889999988887776421 1111222222222222233333 333333333
Q ss_pred HHcCCCCChHHHHHHHHHHHhcCCHh------HHHHHH-HHHHHcCC--------------------CCCHHHHHHHHHH
Q 010740 348 RKLQFPWTSSTYNNVIEAFSDMGDAK------HMEYTF-EQMHAEGM--------------------KADTKTFCCLING 400 (502)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~m~~~~~--------------------~p~~~~~~~l~~~ 400 (502)
.......+...|-.+.++|.-.-..+ ....++ .+....+. ..+..+|..|+..
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 33221223333333333221110000 000111 11111111 1123344444443
Q ss_pred HHh----cC----ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740 401 YAN----AG----LFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472 (502)
Q Consensus 401 ~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 472 (502)
|.+ .| +...|+..+....+.. ..+..+|+.|... ...|.+.-|..-|-+-+... +-...+|..+...|.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence 332 11 2235556666655543 4456666666554 44466666666555554432 225567777777777
Q ss_pred hcCCcHHHHHHHHHHHHhhhhccccc
Q 010740 473 KEGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
+..+++-|...|...+.+.|.+.-.|
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHH
Confidence 77788888888877777777665554
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=6.6e-09 Score=58.34 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 456 HCRPDSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 456 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
|+.||..||++||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777766
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00012 Score=67.51 Aligned_cols=378 Identities=11% Similarity=0.082 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
+.+..+++.+..+ .++++.+.++.+... ++-....|..-|..-....+++....+|.+.+.. ..+...|...+.-
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSY 95 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHH
Confidence 4445566666555 999999999999876 5667779999999999999999999999998876 4567777766653
Q ss_pred HHh-CCCHH----HHHHHHHHhhcCCCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740 189 YCR-NSLID----EAFVTLNQMKTLPNCQP-DVYTYSTLIKAC---------VDAMRFELIETLYQDMDERSVTPNTVTQ 253 (502)
Q Consensus 189 ~~~-~g~~~----~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 253 (502)
-.+ .|+.. ...+-|+-....-|+.+ +-..|+..+..+ ....+++...++|+++...-+.-=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 332 23322 22333443333223333 233455555443 3344667788888888764222111222
Q ss_pred HHH------HHH-------HhccCChHHHHHHHHHHHHc-CCC-------CCC--------HHHHHHHHH----------
Q 010740 254 NIV------LGG-------YGKAGMFDQMERVLSGMLES-ATC-------KPD--------VWTMNTILS---------- 294 (502)
Q Consensus 254 ~~l------~~~-------~~~~g~~~~a~~~~~~~~~~-~~~-------~~~--------~~~~~~l~~---------- 294 (502)
+.. |+. --+...+..|.++++++..- .|. +|. ...|..+|.
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 211 110 01122344455554444210 011 000 001111111
Q ss_pred ---------------------------------------HHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010740 295 ---------------------------------------VFANKGQ-------VDMMERWYEKFRNFGIDPETRTFNILI 328 (502)
Q Consensus 295 ---------------------------------------~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (502)
.+...|+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111121 233444444433321122222222222
Q ss_pred HHHH---ccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 010740 329 GAYG---KKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA-DTKTFCCLINGYANA 404 (502)
Q Consensus 329 ~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~ 404 (502)
..-- .-...+....+++++......--..+|..++....+..-++.|..+|.+..+.+..+ +....++++.-+| .
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-s 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-S 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-c
Confidence 1111 111245555666666555444345678888888888889999999999999988777 6667777777665 5
Q ss_pred CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHH
Q 010740 405 GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD--SETFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 405 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~ 482 (502)
++.+-|.++|+.-++. +..+.......++.+...++-..+..+|++....++.|| ...|..++..-..-|+...+++
T Consensus 415 kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 7789999999877664 344555556788888899999999999999999866655 4689999999999999999999
Q ss_pred HHHHHHHhhhh
Q 010740 483 LEQEKLQMLLE 493 (502)
Q Consensus 483 ~~~~~~~~~~~ 493 (502)
+-+++....+.
T Consensus 494 lekR~~~af~~ 504 (656)
T KOG1914|consen 494 LEKRRFTAFPA 504 (656)
T ss_pred HHHHHHHhcch
Confidence 99998877663
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=1.3e-06 Score=72.99 Aligned_cols=148 Identities=10% Similarity=0.117 Sum_probs=90.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 010740 293 LSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDA 372 (502)
Q Consensus 293 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 372 (502)
+..|...|+++.+....+.+.. +. ..+...++.+++...+....+.+.. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3556677777766444322211 10 0222355566666666666666554 667777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 010740 373 KHMEYTFEQMHAEGMKADTKTFCCLINGY-ANAGL--FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVY 449 (502)
Q Consensus 373 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 449 (502)
++|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776653 22445555555543 45555 467777777777654 445666666777777777777777777
Q ss_pred HHHHHC
Q 010740 450 KRMKEK 455 (502)
Q Consensus 450 ~~~~~~ 455 (502)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 777665
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=2.8e-06 Score=74.13 Aligned_cols=189 Identities=12% Similarity=0.010 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh--H
Q 010740 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET---RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS--S 357 (502)
Q Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 357 (502)
......+..+...+...|++++|...|+++.... +.+. ..+..+..++.+.|++++|...++.+.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456778888888999999999999999988743 2222 46677888899999999999999999887554222 2
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740 358 TYNNVIEAFSDM--------GDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF 428 (502)
Q Consensus 358 ~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (502)
.+..+..++... |+.+.|.+.|+.+.+. .|+.. .+..+..... .... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H--------HHH
Confidence 455555555544 6788888888888875 34432 2222111100 0000 0 011
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 429 YNAVISACIKADDLMEMERVYKRMKEKHC-RP-DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
...+...+.+.|++++|+..++...+... .| ....+..+..++.+.|++++|...++......+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12466778899999999999999987632 12 356888999999999999999999988776654
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.75 E-value=2.6e-05 Score=76.76 Aligned_cols=157 Identities=9% Similarity=-0.034 Sum_probs=113.4
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCC
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEP--TPELYTALLAAYCRNS 193 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 193 (502)
.-|..--+..+|.+.|+.+.+.+ ..+........+.|+...+++.|..+.-..-+.. +. -...|....-.|.+.+
T Consensus 500 ~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~ 576 (1238)
T KOG1127|consen 500 QIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAH 576 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCcc
Confidence 33444457889999999998875 5677789999999999999999999844433321 11 1123344555677788
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 010740 194 LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL 273 (502)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 273 (502)
+...|+..|+...+.. +-|...|..++.+|.+.|++..|.++|.+....... +...-.-..-.-+..|.+.+|+..+
T Consensus 577 n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred chhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8999999999888743 678888999999999999999999999887765221 2222223334456788888888888
Q ss_pred HHHHH
Q 010740 274 SGMLE 278 (502)
Q Consensus 274 ~~~~~ 278 (502)
..++.
T Consensus 654 ~~ii~ 658 (1238)
T KOG1127|consen 654 GLIIY 658 (1238)
T ss_pred HHHHH
Confidence 77654
No 115
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=1.3e-05 Score=76.14 Aligned_cols=175 Identities=18% Similarity=0.307 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
+.+...+.+.....+|.+|+.+++.+..+. .-..-|..+.+.|+..|+++.|.++|-+.- .++..|..
T Consensus 733 ~~~~kaieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~m 800 (1636)
T KOG3616|consen 733 NCLIKAIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDM 800 (1636)
T ss_pred hhHHHHHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHH
Confidence 344455666677788889999988887753 234467788899999999999999986542 35667889
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 268 (502)
|.+.|+++.|.++-++... -......|-.-..-+-+.|++.+|+++|-.+-. |+ ..|.+|-+.|..++
T Consensus 801 y~k~~kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDD 868 (1636)
T ss_pred HhccccHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchH
Confidence 9999999999999887753 245556676666677788888888877644321 22 34566777777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEK 311 (502)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (502)
.+++..+--. ..-..|...+..-+-..|+...|..-|-+
T Consensus 869 mirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 869 MIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 7766654411 11123344455555556666666555543
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3e-05 Score=64.81 Aligned_cols=138 Identities=19% Similarity=0.164 Sum_probs=64.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---
Q 010740 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK--- 333 (502)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 333 (502)
...|+..|++++|++..... . +......-+..+.+..+++-|.+.+++|.+. .+..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~-~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-E------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 33455556666665555442 1 2222222233344555555555555555542 233444444444332
Q ss_pred -cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740 334 -KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406 (502)
Q Consensus 334 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 406 (502)
.+.+.+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+++....... -++.++..++..-...|.
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGK 256 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCC
Confidence 33455555555555543 223555555555555555555555555555554432 234444444444444443
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=8.4e-06 Score=71.12 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 396 CLINGYANAGLFHKVISSVRLASKLQ--IAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.+...+...|++++|...++.+.+.. .+.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556777777888877777776642 1223456777777888888888888877777654
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=8.9e-06 Score=67.89 Aligned_cols=164 Identities=18% Similarity=0.091 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
|... ..+-..+...|+-+....+....... .+.+.......+...++.|++..|+..|++.... -++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHH
Confidence 4444 66677777788877777777765432 2456667777888888999999999999988874 478888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (502)
-+|.+.|++++|..-|.+..+.-.. +....+.+.-.|.-.|+.+.|..++....... .-|...-..+.......|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCCh
Confidence 9999999999999988888876333 56677888888888899999999888875532 33677777788888888999
Q ss_pred HHHHHHHHHHH
Q 010740 303 DMMERWYEKFR 313 (502)
Q Consensus 303 ~~a~~~~~~~~ 313 (502)
++|.++...-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 88888876544
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=4.4e-07 Score=71.75 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438 (502)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 438 (502)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+.+.... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3334444445555555555555544432 2233444445555555555555555555554432 3344444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 010740 439 ADDLMEMERVYKRMKE 454 (502)
Q Consensus 439 ~g~~~~a~~~~~~~~~ 454 (502)
.|++++|+..|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=9.7e-06 Score=67.70 Aligned_cols=157 Identities=15% Similarity=0.015 Sum_probs=88.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 010740 254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK 333 (502)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 333 (502)
..+-..+...|+-+....+....... ...+.......+....+.|++.+|...+.+..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 44455555566666655555554321 12233444445666666666666666666665533 5666666666666666
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010740 334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISS 413 (502)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 413 (502)
.|+++.|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 66666666666666665444 55555566656666666666666666555543 22444455555555556666666555
Q ss_pred HH
Q 010740 414 VR 415 (502)
Q Consensus 414 ~~ 415 (502)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=2e-05 Score=79.22 Aligned_cols=239 Identities=9% Similarity=0.096 Sum_probs=144.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP-ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS 219 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 334557778888888888888888888866655 3433 3333333455555654444433
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740 220 TLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK 299 (502)
Q Consensus 220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (502)
.++.......++..+..+...|.+.+ -+...+..+..+|-+.|+.++|..+++++++-. .-|..+.|.+...|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh
Confidence 22333333334444444444444432 244467777778888888888888888877653 44667777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHH
Q 010740 300 GQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379 (502)
Q Consensus 300 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 379 (502)
++++|.+++.+.+.. |...+++..+.+++.++...... +...+-. +.
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~----------------i~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLR----------------IE 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHH----------------HH
Confidence 788887777776643 55556777777777777766433 2222222 22
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740 380 EQMHAE-GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437 (502)
Q Consensus 380 ~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (502)
+.+... |..--..++..+-..|...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222221 112223455556667777778888888888888765 445666666666665
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.65 E-value=3.6e-05 Score=77.43 Aligned_cols=220 Identities=9% Similarity=0.060 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740 107 WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186 (502)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 186 (502)
....+..++..+...+++++|.++.+...+.. +-....|..+...+.+.++.+.+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 34667778888889999999999999777753 33344555555577778876665555 2 23
Q ss_pred HHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 010740 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF 266 (502)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 266 (502)
.......++.-...+...|... ..+...+..+..+|-+.|+.+++..+|+++.+... -|..+.|.+...|... +.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hH
Confidence 3333444443333333444432 34455677778888888888888888888887763 3777778888877777 88
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------CCCCHHHHHHH
Q 010740 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG-------------------IDPETRTFNIL 327 (502)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l 327 (502)
++|++++.+.++. +...+++.++.++|.++.... ...-..++-.+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 8888877777653 344445555555555555432 12223334444
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 010740 328 IGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS 367 (502)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (502)
-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 45555556666666666666665444 4444555555443
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=6.2e-08 Score=54.36 Aligned_cols=31 Identities=35% Similarity=0.739 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740 175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 205 (502)
+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.5e-05 Score=76.71 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=104.6
Q ss_pred CCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCC--------
Q 010740 142 PKEGTYMKLLV--LLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNC-------- 211 (502)
Q Consensus 142 ~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------- 211 (502)
-|..+-..+++ .|..-|+.+.|.+-.+-++ +..+|..|.+.|.+.++++-|.-.+-.|....|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 35566666664 5678899999988877665 4578999999999999998887777666433221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010740 212 QPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT 291 (502)
Q Consensus 212 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 291 (502)
.++ .+=....-.....|.+++|+.+|.+-++. ..|=+.|...|++++|.++-+.- .+ ..=..||..
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~-DR---iHLr~Tyy~ 863 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK-DR---IHLRNTYYN 863 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc-cc---eehhhhHHH
Confidence 121 22222333346778999999999987653 45556788899999999987643 21 112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 010740 292 ILSVFANKGQVDMMERWYEKF 312 (502)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~ 312 (502)
-...+...+|.+.|++.|++.
T Consensus 864 yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhc
Confidence 667777788899999888764
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.4e-05 Score=63.83 Aligned_cols=251 Identities=12% Similarity=0.044 Sum_probs=162.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
++.+.-.|+|..++..-...... +.+...-..+.++|...|++..... +.+... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcch
Confidence 34445568888888777665543 2345555566677777777654332 222222 3444444444444444455
Q ss_pred HHHHHH-HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 010740 195 IDEAFV-TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL 273 (502)
Q Consensus 195 ~~~a~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 273 (502)
.++-+. +.+.+... ....+......-...|++.+++++|++...... +....-.=+..+.+..+++-|.+.+
T Consensus 88 ~~~~~~~l~E~~a~~-~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 88 KKSILASLYELVADS-TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hHHHHHHHHHHHHhh-ccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 33444332 223333333444556888999999999887622 3333333345567788899999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740 274 SGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349 (502)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (502)
++|.+. .+..+.+.|..++.+ .+.+.+|.-+|++|-+. .+|+..+.+-...++...|++++|..+++....
T Consensus 161 k~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 161 KKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999653 356677767766654 45788999999999863 589999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhcCCH-hHHHHHHHHHHHc
Q 010740 350 LQFPWTSSTYNNVIEAFSDMGDA-KHMEYTFEQMHAE 385 (502)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~ 385 (502)
.... ++.+...++.+-...|.. +...+.+.+++..
T Consensus 236 kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 236 KDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred ccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 8776 677777777666666654 3445556666554
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=2.3e-05 Score=77.95 Aligned_cols=147 Identities=10% Similarity=0.027 Sum_probs=119.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS 219 (502)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (502)
++.+...+-.|..+....|++++|..+++...+.. +-+......+...+.+.+++++|+..+++.... -+.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 46678899999999999999999999999998874 445667788889999999999999999998874 256677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010740 220 TLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTI 292 (502)
Q Consensus 220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 292 (502)
.+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+..++.. .+....|+..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHH
Confidence 88888999999999999999998843 3367888889999999999999999999987653 3344444443
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=7.6e-06 Score=64.67 Aligned_cols=103 Identities=8% Similarity=-0.053 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 473 (502)
+..+...+...|++++|...++.+.... +.+...|..+..++...|++++|+..|++....+. .+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 4445556666666666666666666553 44566666666666666666666666666665432 255566666666666
Q ss_pred cCCcHHHHHHHHHHHHhhhhccccc
Q 010740 474 EGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
.|+.++|++.|+++++..|++.+.|
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHH
Confidence 6666666666666666665554433
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=5.8e-06 Score=69.17 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=87.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCC--HHH
Q 010740 157 SGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC-VDAMR--FEL 233 (502)
Q Consensus 157 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~ 233 (502)
.++.+++...++..++.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 566677777777766654 5677778888888888888888888888877753 45666777777654 55565 478
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 010740 234 IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA 280 (502)
Q Consensus 234 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 280 (502)
|.+++++..+.+.. +...+..+...+...|++++|...|+++++..
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888888777544 66777777777888888888888888877653
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=6e-05 Score=75.03 Aligned_cols=181 Identities=6% Similarity=0.047 Sum_probs=132.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHH
Q 010740 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV 362 (502)
Q Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (502)
..+...+..|.......|.+++|..+++.+.+.. +-+......+...+.+.+++++|+..++........ +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4467888888888999999999999999988754 555667788888889999999999999988888766 77788888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCH
Q 010740 363 IEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDL 442 (502)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 442 (502)
..++.+.|++++|.++|+++...+ .-+..++..+..++...|+.++|...|+...+.. .+...-|+.++ +++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 888899999999999999998742 2346788888888999999999999998888763 44555555544 233
Q ss_pred HHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHh
Q 010740 443 MEMERVYKRMKEKH----CRPDSETFSIMTEAYAK 473 (502)
Q Consensus 443 ~~a~~~~~~~~~~g----~~p~~~~~~~l~~~~~~ 473 (502)
..-..+++++.-.+ ..........++.-|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 34444555554332 22233344555554543
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.0006 Score=63.05 Aligned_cols=338 Identities=10% Similarity=0.082 Sum_probs=201.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST 220 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+-|..+|..||+-+..+ -.+++++.++++... ++-....|..-|..-....+++....+|.+.... ..+...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHHHH
Confidence 66889999999988877 999999999999865 3556789999999999999999999999998763 466777877
Q ss_pred HHHHHHhc-CCHHH----HHHHHHHHH-hCCCCCC-HHHHHHHHHHH---hccCChH------HHHHHHHHHHHcCCCCC
Q 010740 221 LIKACVDA-MRFEL----IETLYQDMD-ERSVTPN-TVTQNIVLGGY---GKAGMFD------QMERVLSGMLESATCKP 284 (502)
Q Consensus 221 ll~~~~~~-~~~~~----a~~~~~~~~-~~g~~~~-~~~~~~l~~~~---~~~g~~~------~a~~~~~~~~~~~~~~~ 284 (502)
.++--.+. ++... ..+.|+-.. +.|+.+- -..|+..+..+ -..|.++ ...+++++++. .|
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~----tP 167 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV----TP 167 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc----Cc
Confidence 77654443 33322 333344433 4554332 23455555433 3356554 45566666654 33
Q ss_pred --C-------HHHHHHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHH--
Q 010740 285 --D-------VWTMNTILSVF-------ANKGQVDMMERWYEKFRN--FGIDPETR---------------TFNILIG-- 329 (502)
Q Consensus 285 --~-------~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~-- 329 (502)
+ -..|..=|+.. -+...+..|.++++++.. .|...... .|-.+|.
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 1 11222112111 122344556666655542 12111100 0111111
Q ss_pred --------------------------HH---------------------HccCc-------HHHHHHHHHHHHHcCCCCC
Q 010740 330 --------------------------AY---------------------GKKRM-------YDKMSSVMEYMRKLQFPWT 355 (502)
Q Consensus 330 --------------------------~~---------------------~~~g~-------~~~a~~~~~~~~~~~~~~~ 355 (502)
.+ ...|+ .+++..+++.....-...+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 10 01111 2233333333322211112
Q ss_pred hHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChHHHH
Q 010740 356 SSTYNNVIEAFSDMG---DAKHMEYTFEQMHAEG-MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE-NVSFYN 430 (502)
Q Consensus 356 ~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 430 (502)
..+|..+...--..- ..+.....++++...- +.|+ .+|..+++.-.+..-++.|..+|.++.+.+..+ .+.+++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 222222222111111 2444555566655432 3333 457778888888888999999999999887666 788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 431 AVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
+++..|| .++.+-|.++|+.-... +.-++..-...+..+...|+-..|..+|++.+..
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 8888776 57889999999976664 3335555567788888889888888888888776
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.56 E-value=0.0011 Score=65.10 Aligned_cols=193 Identities=16% Similarity=0.149 Sum_probs=124.3
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
+.+.|+.++|..+++.....+ ..|..+...+-.+|...|+.++|..+|++.... .|+......+..+|++.+.+.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 457899999998888877664 347788999999999999999999999998865 5778888888888888888766
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCh
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR----------FELIETLYQDMDERS-VTPNTVTQNIVLGGYGKAGMF 266 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~ 266 (502)
-.+.--++-+ .++-+...+-.+++.+..... ...|.+.++.+.+.+ -.-+..-.......+...|++
T Consensus 129 qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 129 QQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 4444333333 224445555555555543211 234666777776654 222222223333445567888
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316 (502)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (502)
++|.+++..-....-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 89988884332222223344444455666667777777777776666654
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=7.3e-05 Score=68.17 Aligned_cols=113 Identities=11% Similarity=-0.004 Sum_probs=65.7
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 010740 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAGLFHKV 410 (502)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 410 (502)
...|++++|+..+..+.+..+. |+..+......+...++.++|.+.++++... .|+ ......+..++.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3446666666666665555433 5555555556666666666666666666654 344 34445555666666666666
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 010740 411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV 448 (502)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 448 (502)
+.+++...... +.+...|..|..+|...|+..++...
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH
Confidence 66666555542 55566666666666666665555443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=0.00081 Score=61.61 Aligned_cols=113 Identities=11% Similarity=0.108 Sum_probs=55.8
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCcHH
Q 010740 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE-TRTFNILIGAYGKKRMYD 338 (502)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 338 (502)
+...|++++|+..++.++.. .+-|...+......+.+.++.++|.+.++++... .|+ ....-.+.++|.+.|+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 34445555555555555443 1233444444455555555555555555555543 222 333444445555555555
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHH
Q 010740 339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEY 377 (502)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 377 (502)
+|..+++........ |+..|..|..+|...|+..++..
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 555555555444333 55555555555555555544443
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=5e-06 Score=65.41 Aligned_cols=99 Identities=11% Similarity=0.162 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 473 (502)
...+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+..+|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444455555556666666555555543 3345555555555555666666666666555542 2244555555555566
Q ss_pred cCCcHHHHHHHHHHHHhhhhc
Q 010740 474 EGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~ 494 (502)
.|++++|+..++++++..+.+
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGEN 118 (135)
T ss_pred cCCHHHHHHHHHHHHHhcccc
Confidence 666666666666665555444
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00028 Score=58.76 Aligned_cols=189 Identities=10% Similarity=0.064 Sum_probs=123.1
Q ss_pred hhcHHHHHHHHHHHHhC---CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740 121 KKQWFQALQVFEMLKEQ---PFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID 196 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~---~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 196 (502)
.++.++.++++..+... |...++.. .|..++-+....|+.+.|...++++..+- +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 46777888887766432 11334444 56677777778888888888888877653 334444333333445568888
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
+|+++|+.+.+.+ +.|..++-.-+...-..|+--+|++-+....+. +..|...|.-+...|...|+++.|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888753 667777776666666677777777777777665 4557888888888888888888888888877
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 010740 277 LESATCKPDVWTMNTILSVFANKG---QVDMMERWYEKFRNF 315 (502)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 315 (502)
+-.. +.+...+..+...+.-.| +.+.+.++|.+.++.
T Consensus 181 ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6532 223334444444443333 445666667666654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00039 Score=57.94 Aligned_cols=189 Identities=14% Similarity=0.067 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740 158 GQPELARKVFNEMVEE---G-IEPTPE-LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE 232 (502)
Q Consensus 158 g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 232 (502)
.+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++++... ++-+...-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchh
Confidence 4566677777666543 3 345543 4566777888899999999999998763 3333333222233345678999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740 233 LIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKF 312 (502)
Q Consensus 233 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (502)
+|+++|+.+.+.+ +.|..++-.=+...-..|+--+|++-+...++. +..|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999886 336667766666666677777888888888775 4678999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHcc---CcHHHHHHHHHHHHHcCC
Q 010740 313 RNFGIDPETRTFNILIGAYGKK---RMYDKMSSVMEYMRKLQF 352 (502)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~ 352 (502)
.-.. |.+...+..+...+.-. .+.+.+.++|....+...
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 8654 55555666666655443 356678888888877644
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.6e-05 Score=62.41 Aligned_cols=99 Identities=15% Similarity=0.014 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
+......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..++++..+.. +.+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 33445555566666666666666666665543 3455666666666666666666666666665532 44455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 010740 223 KACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~ 244 (502)
.++...|+++.|.+.|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666665554
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=8.6e-05 Score=58.96 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hHHHHHHHH
Q 010740 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD--TKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN--VSFYNAVIS 434 (502)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 434 (502)
|..++..+ ..++...+...++.+......-. ....-.+...+...|++++|...|+.+......++ ....-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 36777777777777776532111 12333455667778888888888888777652222 123344667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
.+...|++++|+..++...... .....+.....+|.+.|++++|...|+++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888887654332 24556667788888888888888888775
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=5.6e-05 Score=69.49 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (502)
....|+..+...++++.|..+|+++.+.. |+. ...+++.+...++-.+|.+++.+..+.. +.+...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33445555556677777777777777653 443 3346666666777777777777776542 445666666677777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 438 KADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
+.++++.|+++.+++.+. .| +..+|..|..+|.+.|++++|+..++-+.-.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888888888888888774 34 4557888888888888888888777766543
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=6.6e-05 Score=69.05 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK 262 (502)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 262 (502)
..|+..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|.+++.+..+.. +-+......-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 34444444455555555555555543 2332 2234444445555555555555555432 2244444444455555
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740 263 AGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMMERWYEKF 312 (502)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (502)
.++++.|+++.+++.+. .| +..+|..|..+|...|+++.|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555555442 23 2335555555555555555555555544
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=0.00034 Score=55.57 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK---EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT--PELYTAL 185 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 185 (502)
+..++..+ ..+++..+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++ ....-.+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33333333 4778888888888777753 333 22334455777788888888888888887642222 1234456
Q ss_pred HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDM 241 (502)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 241 (502)
...+...|++++|+..++..... ......+....+++...|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77778888888888888765432 344556667777888888888888887653
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.9e-06 Score=47.90 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPD 460 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~ 460 (502)
+|+.++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.3e-06 Score=47.34 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010740 427 SFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p 459 (502)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777787777777766
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.011 Score=58.42 Aligned_cols=230 Identities=13% Similarity=0.056 Sum_probs=154.4
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLV--LLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (502)
|-.....+++.+|++....+.++ .|+. .|...+. .+.+.|+.++|..+++.....+. -|..+...+-.+|.+.
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHH
Confidence 33455679999999999988876 3442 3333333 34688999999999988876653 3888999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--------
Q 010740 193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG-------- 264 (502)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-------- 264 (502)
++.++|..+|++.... .|+......+..+|.+.+++.+-.+.--+|.+. ++-+...+=.++..+...-
T Consensus 91 ~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred hhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 9999999999999864 477888888889999988886644444444332 3334444445555444321
Q ss_pred --ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010740 265 --MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY-EKFRNFGIDPETRTFNILIGAYGKKRMYDKMS 341 (502)
Q Consensus 265 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (502)
-..-|.+.++.+++..|-.-+..-...-...+...|++++|.+++ ....+.-...+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 123466667777666542222222333334455677888888888 34443333444455556677777888888888
Q ss_pred HHHHHHHHcCCC
Q 010740 342 SVMEYMRKLQFP 353 (502)
Q Consensus 342 ~~~~~~~~~~~~ 353 (502)
++-.++...+..
T Consensus 247 ~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 247 ELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhCCc
Confidence 888888777654
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=7.9e-05 Score=54.12 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740 395 CCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE 474 (502)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 474 (502)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++....... .+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 344555555666666666666665542 23335555566666666667777766666665432 2334566666666666
Q ss_pred CCcHHHHHHHHHHHHhh
Q 010740 475 GMNDKVYALEQEKLQML 491 (502)
Q Consensus 475 g~~~~A~~~~~~~~~~~ 491 (502)
|++++|...+++..+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 77777777666665543
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=8e-06 Score=46.58 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD 390 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 390 (502)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=0.00017 Score=55.12 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQI--AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR--PDSETFSIMTE 469 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--p~~~~~~~l~~ 469 (502)
+..++..+...|++++|.+.+..+.+..- +.....+..+..++.+.|++++|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444445555555555555555544320 001233444555555555555555555555543211 11334455555
Q ss_pred HHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 470 AYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
++.+.|+.++|.+.++++++..|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcC
Confidence 555555555555555555555444
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=0.00015 Score=67.04 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHH
Q 010740 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNF--GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYN 360 (502)
Q Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (502)
..+......++..+....+.+++..++.+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 446677777888888888888888888888764 222223455688888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010740 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA 404 (502)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 404 (502)
.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888776666666666666655554
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=1.1e-05 Score=45.62 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA 389 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 389 (502)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.00022 Score=63.49 Aligned_cols=132 Identities=10% Similarity=0.128 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING-YANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (502)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554321 1122223222222 11233444455555555443 344455555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 437 IKADDLMEMERVYKRMKEKHCRPDS---ETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
.+.|+.+.|..+|++.... +.++. ..|...++.-.+.|+.+.+.++.+++.+..+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 5555555555555555543 22111 2555555555555555555555555555443
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.98 E-value=0.00014 Score=67.30 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 010740 315 FGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ--FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK 392 (502)
Q Consensus 315 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 392 (502)
.+.+.+......+++.+....+.+.+..++....... ...-..|..++++.|...|..+.++++++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456677778888888888888888888888777652 22233455688888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 439 (502)
+++.||..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777776666666666666666555
No 152
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.98 E-value=0.013 Score=53.43 Aligned_cols=145 Identities=9% Similarity=0.066 Sum_probs=97.1
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 010740 127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMK 206 (502)
Q Consensus 127 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 206 (502)
-+++=+.+++. +.|..+|-.|+..+..+|..++.++++++|..- ++-=..+|...+++-....++.....+|.+..
T Consensus 28 ~lrLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 28 ELRLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 34666677664 668889999999999999999999999999743 34446788888888888899999999999988
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHh-CCCCCC-HHHHHHHHHHH---hccCCh------HHH
Q 010740 207 TLPNCQPDVYTYSTLIKACVDAMRF------ELIETLYQDMDE-RSVTPN-TVTQNIVLGGY---GKAGMF------DQM 269 (502)
Q Consensus 207 ~~~~~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~---~~~g~~------~~a 269 (502)
.. ..+...|...+.-..+.+.. ....+.|+-... .++.|- ...|+..+..+ -..|.+ +..
T Consensus 104 ~k---~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 104 KK---SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred hh---hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 74 45677787777665554422 122333444333 344443 33455444433 334444 455
Q ss_pred HHHHHHHHH
Q 010740 270 ERVLSGMLE 278 (502)
Q Consensus 270 ~~~~~~~~~ 278 (502)
.+.+.+++.
T Consensus 181 R~~Y~ral~ 189 (660)
T COG5107 181 RNGYMRALQ 189 (660)
T ss_pred HHHHHHHHc
Confidence 566666654
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0037 Score=56.10 Aligned_cols=351 Identities=10% Similarity=0.000 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
+.....-..+....+|..|+..+..+.+.. +.++.-|..-+..+...|++++|.--.+.-++.. +-....+...-++
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c 126 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQC 126 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhh
Confidence 333344455666667777777777766653 4445556666666666666666665554444331 1112233334444
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHhccCCh
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV-TPNTVTQNIV-LGGYGKAGMF 266 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l-~~~~~~~g~~ 266 (502)
+...++..+|.+.++. ...+ ....++..++.+..... +|...++..+ ..++.-.|++
T Consensus 127 ~~a~~~~i~A~~~~~~----------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKS----------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred hhhhHHHHHHHHHhhh----------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 4444444444444431 1111 11122222222222211 2333444433 3456778999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHH----------HHHHHc
Q 010740 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTF---NIL----------IGAYGK 333 (502)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l----------~~~~~~ 333 (502)
++|.++--.+++.. ..+......-..++.-.++.+.+...|++.+..+ |+...- ... .+-..+
T Consensus 186 ~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 186 DEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred hhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 99998887776532 1222333333344556788999999999888653 443322 111 223456
Q ss_pred cCcHHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHH
Q 010740 334 KRMYDKMSSVMEYMRKLQ---FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHK 409 (502)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 409 (502)
.|++..|.+.+.+.+... ..++...|.....+..+.|+..+|+.--++.... .+.. ..|..-..++...++|++
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999887764 3456677888888888999999999888877753 2211 233333455667788999
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCcHHHHHHHH
Q 010740 410 VISSVRLASKLQIAE-NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA---KEGMNDKVYALEQ 485 (502)
Q Consensus 410 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~ 485 (502)
|.+.++...+....+ ...++.....++-+..+.+ =.+++--.+.....|....|..+.-.+. ..|.-.+|...|+
T Consensus 340 AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFk 418 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFK 418 (486)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHH
Confidence 999998887764332 2233333333333322222 1223333333333455666765544432 3455577777777
Q ss_pred HHHHh
Q 010740 486 EKLQM 490 (502)
Q Consensus 486 ~~~~~ 490 (502)
++-..
T Consensus 419 evgeA 423 (486)
T KOG0550|consen 419 EVGEA 423 (486)
T ss_pred HHHHH
Confidence 76543
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.95 E-value=0.00035 Score=54.49 Aligned_cols=95 Identities=7% Similarity=0.003 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438 (502)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 438 (502)
.-.+...+...|++++|..+|+-+...+ .-+..-|..|..++-..|++++|+..|..+...+ +.++..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344445556666666666666666543 2234455566666666666666666666666655 4555666666666666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 010740 439 ADDLMEMERVYKRMKEK 455 (502)
Q Consensus 439 ~g~~~~a~~~~~~~~~~ 455 (502)
.|+.+.|.+-|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666665543
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.94 E-value=0.0006 Score=53.21 Aligned_cols=94 Identities=6% Similarity=-0.040 Sum_probs=62.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010740 184 ALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA 263 (502)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 263 (502)
.+...+...|++++|..+|+.+...+ +-+...|-.|..++...|++++|+..|.......+. |...+..+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 34445556677777777777766542 455556666777777777777777777777666543 666666677777777
Q ss_pred CChHHHHHHHHHHHHcC
Q 010740 264 GMFDQMERVLSGMLESA 280 (502)
Q Consensus 264 g~~~~a~~~~~~~~~~~ 280 (502)
|+.+.|.+-|+..+...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 77777777777665543
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00043 Score=52.82 Aligned_cols=96 Identities=16% Similarity=0.020 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 010740 112 AETFSDHVLKKQWFQALQVFEMLKEQPFY-QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGI--EPTPELYTALLAA 188 (502)
Q Consensus 112 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 188 (502)
......+...|++++|++.|+.+.+...- +.....+..+..++.+.|+++.|...|+.+....- +....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444455566666666666665543200 11123455566666666666666666666554320 1113445555555
Q ss_pred HHhCCCHHHHHHHHHHhhc
Q 010740 189 YCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~ 207 (502)
+.+.|+.++|...++++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 6666666666666666555
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00034 Score=64.71 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=78.1
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
...+...|++++|++.|+.+.+.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 445567899999999999998874 5677788899999999999999999999998875 4567888889999999999
Q ss_pred HHHHHHHHHHhhcC
Q 010740 195 IDEAFVTLNQMKTL 208 (502)
Q Consensus 195 ~~~a~~~~~~~~~~ 208 (502)
+++|+..|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.93 E-value=0.0081 Score=52.13 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=31.3
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHc
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTY---MKLLVLLGKSGQPELARKVFNEMVEE 173 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~ 173 (502)
.+...|++++|++.|+.+.... +-+.... -.++.++.+.++++.|...+++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445666667777666666542 2222222 34455666666666666666666655
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00027 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=8.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 010740 149 KLLVLLGKSGQPELARKVFNEM 170 (502)
Q Consensus 149 ~l~~~~~~~g~~~~a~~~~~~~ 170 (502)
.+...+...|++++|.+.|+..
T Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 39 NLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00026 Score=65.42 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=81.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740 362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441 (502)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 441 (502)
-...+...|++++|+++|+++++.. +-+...|..+..+|...|++++|+..++.+.+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456677899999999999998864 3356778888899999999999999999998875 5577788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740 442 LMEMERVYKRMKEKHCRPDSETFSIM 467 (502)
Q Consensus 442 ~~~a~~~~~~~~~~g~~p~~~~~~~l 467 (502)
+++|+..|++....+ |+......+
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 999999999998853 444433333
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.00032 Score=62.43 Aligned_cols=124 Identities=13% Similarity=0.157 Sum_probs=52.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVL-LGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS 193 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 193 (502)
++...+.+..+.|..+|..+.+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...+..+...|
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhC
Confidence 334444444555555555555432 1222333333333 22233444455555555443 2344445555555555555
Q ss_pred CHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 194 LIDEAFVTLNQMKTLPNCQPDV---YTYSTLIKACVDAMRFELIETLYQDMDE 243 (502)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 243 (502)
+.+.|..+|++.... +..+. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 85 d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 85 DINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp -HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555442 11111 2444444444444555555444444444
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.86 E-value=4.2e-05 Score=54.10 Aligned_cols=81 Identities=9% Similarity=0.145 Sum_probs=46.1
Q ss_pred cCChHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 010740 404 AGLFHKVISSVRLASKLQIA-ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 482 (502)
.|+++.|+.+++.+.+.... ++...+..+..+|.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666777777666665321 1334444466777777777777777766 22211 123444455666777777777777
Q ss_pred HHHH
Q 010740 483 LEQE 486 (502)
Q Consensus 483 ~~~~ 486 (502)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.86 E-value=7.8e-05 Score=49.69 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=46.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 432 VISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
+...+.+.|++++|++.|+++.+.... +...+..+..++.+.|++++|...|+++++..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455677888888888888888876422 56677788888888888888888888888777654
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00034 Score=50.47 Aligned_cols=29 Identities=7% Similarity=0.313 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 374 HMEYTFEQMHAEGMKADTKTFCCLINGYA 402 (502)
Q Consensus 374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 402 (502)
..+.+|++|...+++|+..+|+.++..+.
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 44555666666666666666666665544
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.83 E-value=3.2e-05 Score=54.71 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=37.1
Q ss_pred hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010740 122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201 (502)
Q Consensus 122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 201 (502)
|+++.|+.+|+.+.+.....++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 555556666655554421001223334455555555555555555555 2211 11223333345555555555555555
Q ss_pred HHH
Q 010740 202 LNQ 204 (502)
Q Consensus 202 ~~~ 204 (502)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.0093 Score=47.47 Aligned_cols=130 Identities=11% Similarity=0.040 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST 220 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
-|+..--..|..++...|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.+.-..+..+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555555666666666666665554333445555555555555556666666666555443211112223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740 221 LIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV 272 (502)
Q Consensus 221 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (502)
+...+...|.++.|+.-|+.....- |+...-......+.+.|+.+++..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHH
Confidence 4555555556555665555555542 2222222222334445544444433
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.00054 Score=49.46 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHH
Q 010740 112 AETFSDHVLKKQWFQALQVFEMLKEQPFY-QPKEGTYMKLLVLLGKSG--------QPELARKVFNEMVEEGIEPTPELY 182 (502)
Q Consensus 112 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 182 (502)
...|..+...+++...-.+|+.++..| + .|+..+|+.++.+.++.. ++-..+.+|+.|+..++.|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 345556667799999999999999888 6 889999999998887654 244677888888888888888888
Q ss_pred HHHHHHHHh
Q 010740 183 TALLAAYCR 191 (502)
Q Consensus 183 ~~l~~~~~~ 191 (502)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.81 E-value=0.0017 Score=53.26 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT--PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST 220 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|+..+++..... +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 344677777778888888888888888876532221 3567778888888888888888888877642 445666666
Q ss_pred HHHHHHhcCCHHHHH
Q 010740 221 LIKACVDAMRFELIE 235 (502)
Q Consensus 221 ll~~~~~~~~~~~a~ 235 (502)
+..++...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 777777766654433
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.001 Score=57.19 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
+.+..--..+.+.++|++|+..|..+.+.. +-|...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A 158 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 444444556778899999999999999863 6678888999999999999999999999998764 3446889999999
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
|...|++++|++.|++..+. .|+-.+|-.=+.
T Consensus 159 ~~~~gk~~~A~~aykKaLel---dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALEL---DPDNESYKSNLK 190 (304)
T ss_pred HHccCcHHHHHHHHHhhhcc---CCCcHHHHHHHH
Confidence 99999999999999999875 576666644443
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.0018 Score=53.15 Aligned_cols=62 Identities=13% Similarity=-0.034 Sum_probs=29.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740 323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT--SSTYNNVIEAFSDMGDAKHMEYTFEQMHA 384 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 384 (502)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555544322211 23444444555555555555555555444
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=0.00013 Score=49.32 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHhhh
Q 010740 425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG-MNDKVYALEQEKLQMLL 492 (502)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 492 (502)
+..+|..+...+...|++++|+..|++..+.+.. +...|..+..+|.+.| ++++|++.++++++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566778888888888888888888888886422 5667888888888888 68888888888887654
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3.6e-05 Score=42.35 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666654
No 173
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.047 Score=53.18 Aligned_cols=330 Identities=12% Similarity=0.110 Sum_probs=180.5
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh--HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP--ELAR-KVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
++..++..+.|..|+++-.++...- .-+...|.....-+.+..+. +++. .+-+++.. .. -...+|..+.+-..
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL-TPGISYAAIARRAY 518 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC-CCceeHHHHHHHHH
Confidence 4556677788888888888876432 11245666666666666432 2233 33333322 12 34556777777777
Q ss_pred hCCCHHHHHHHHHHhhcCCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQ---PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD 267 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 267 (502)
..|+.+-|..+++.=.....-. .+..-+...+.-+.+.|+.+....++-.+...- +...+... ..+.-
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhch
Confidence 8888888888776432211000 122234455666667777777777766665531 11222221 12344
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHHccCc-----
Q 010740 268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYE--KFR----NFGIDPETRTFNILIGAYGKKRM----- 336 (502)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~~g~----- 336 (502)
.|..+|.+..++.+-. + +-..| +.++-.++..-|. ... ..+..|+ .....+.|.+...
T Consensus 590 ~a~~lY~~~~r~~~~~----~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDRA----T---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred hhhHHHHHHHHhhchh----h---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 5666666654432211 0 11111 2222222222211 100 0122222 2333344444332
Q ss_pred -----HHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010740 337 -----YDKMSSVMEYMRK-LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKV 410 (502)
Q Consensus 337 -----~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 410 (502)
..+-+.+...+.. .+....--+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 1122222222222 1222233445555666777888888888777665 57888888888888888888877
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010740 411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486 (502)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (502)
+++-+... .+.=|..++.+|.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++.-+
T Consensus 735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 77655332 1344778888999999999999888766431 1 456778888888888776544
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.031 Score=50.49 Aligned_cols=110 Identities=11% Similarity=0.040 Sum_probs=69.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 402 (502)
+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+++..++|++...+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566667776666664433 22 4777777778888888887776665432 123456777777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM 452 (502)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 452 (502)
..|+..+|..+... ++ +..-+..|.++|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77877777776654 11 244566677778777776654443
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.74 E-value=0.00095 Score=54.57 Aligned_cols=63 Identities=11% Similarity=-0.094 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDP--ETRTFNILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
.|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|...+......
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444455555555555555554332111 1224444555555555555555555554443
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.74 E-value=0.00094 Score=54.61 Aligned_cols=92 Identities=11% Similarity=-0.010 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA--DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (502)
.|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++...... +.....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34444455555566666666665555432111 12345555555666666666666665555432 2233334444444
Q ss_pred HH-------HcCCHHHHHHHHH
Q 010740 436 CI-------KADDLMEMERVYK 450 (502)
Q Consensus 436 ~~-------~~g~~~~a~~~~~ 450 (502)
+. ..|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 5555554444433
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.031 Score=50.45 Aligned_cols=185 Identities=10% Similarity=-0.026 Sum_probs=113.2
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010740 197 EAFVTLNQMKTLPNCQPDVYTYSTLI-KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG 275 (502)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (502)
.++..++.+....--+|...+|..+- .++.-.+++++|.+.--..++..-. +......--.++.-.++.+.+...|++
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~q 228 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQ 228 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhh
Confidence 34444444433222234444444433 3455678888888776666655221 222222222334456778888888887
Q ss_pred HHHcCCCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCcHHH
Q 010740 276 MLESATCKPDVWT-------------MNTILSVFANKGQVDMMERWYEKFRNF---GIDPETRTFNILIGAYGKKRMYDK 339 (502)
Q Consensus 276 ~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 339 (502)
.+.- .|+... +..-..-..+.|.+..|.+.|.+.+.. ++.++...|........+.|+..+
T Consensus 229 al~l---dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 229 ALRL---DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred hhcc---ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence 7542 444322 122223456789999999999988863 345667778888888889999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740 340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386 (502)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 386 (502)
|+.--+...+.+.. -...|..-..++...++|++|.+-|+...+..
T Consensus 306 aisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 306 AISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99888887775221 12233333455666789999999998887654
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0026 Score=54.67 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHH
Q 010740 296 FANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375 (502)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (502)
..+.++|++|+..|.+.++.. +-|..-|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 445667777777777777643 455566666666777777777777666666665433 455677777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHH
Q 010740 376 EYTFEQMHAEGMKADTKTFCC 396 (502)
Q Consensus 376 ~~~~~~m~~~~~~p~~~~~~~ 396 (502)
++.|++.++ +.|+-.+|-.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 777776665 3566555533
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.017 Score=50.10 Aligned_cols=176 Identities=11% Similarity=0.063 Sum_probs=95.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRT---FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368 (502)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (502)
....+...|++++|.+.|+++.... +-+... .-.+..++.+.+++++|...+++..+..+.....-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3334455666666666666665532 111111 134445566666666666666666665444333333333333221
Q ss_pred --c---------------CC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740 369 --M---------------GD---AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF 428 (502)
Q Consensus 369 --~---------------~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (502)
. .+ ...|...|+++++. -|+ ..-..+|...+..+... .-..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~---la~~- 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR---LAKY- 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH---HHHH-
Confidence 0 11 22344455555443 233 23334454444333221 0011
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 429 YNAVISACIKADDLMEMERVYKRMKEK--HCRPDSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+.....
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 124667788899999999999998876 22234556778888999999999988776543
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.72 E-value=0.001 Score=59.39 Aligned_cols=285 Identities=12% Similarity=0.022 Sum_probs=141.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHhh----cCCCCCCCHHHHHHHHH
Q 010740 152 VLLGKSGQPELARKVFNEMVEEGIEPTP----ELYTALLAAYCRNSLIDEAFVTLNQMK----TLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~ll~ 223 (502)
.-+++.|+......+|+..++.| .-|. ..|..|..+|.-.+++++|+++...=. ..+.-.-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45788888888888888888877 3443 345666677777778888877643210 00000111223333444
Q ss_pred HHHhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010740 224 ACVDAMRFELIETLYQD----MDERSVT-PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~----~~~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (502)
.+--.|.+++|.-.-.+ ..+.|-. .....+..+...|...|+.-....- +..|-.+..++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p-----ee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP-----EEKGAFNAEVT---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh-----hhcccccHHHH----------
Confidence 44455556555433221 1122211 1223344444444444321100000 00000011000
Q ss_pred cCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHH----HcCCC-CChHHHHHHHHHHHh
Q 010740 299 KGQVDMMERWYEKFR----NFGID-PETRTFNILIGAYGKKRMYDKMSSVMEYMR----KLQFP-WTSSTYNNVIEAFSD 368 (502)
Q Consensus 299 ~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~ 368 (502)
..++.|.++|.+-+ +.|-. .-...|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+..++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 01122333332211 11100 112356666666677778887776654322 22211 123466677777777
Q ss_pred cCCHhHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHHH
Q 010740 369 MGDAKHMEYTFEQMHA----EGM-KADTKTFCCLINGYANAGLFHKVISSVRLASKL-----QIAENVSFYNAVISACIK 438 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~----~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 438 (502)
.|+++.|.+.|+.... .|- .....+..+|.+.|.-..++++|+.++..-+.. ...-....+-+|..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 7888888777765432 221 223345566777777777777777776532221 112234556667777777
Q ss_pred cCCHHHHHHHHHHHH
Q 010740 439 ADDLMEMERVYKRMK 453 (502)
Q Consensus 439 ~g~~~~a~~~~~~~~ 453 (502)
.|..++|+.+.+.-.
T Consensus 328 lg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 328 LGEHRKALYFAELHL 342 (639)
T ss_pred hhhHHHHHHHHHHHH
Confidence 777777776665444
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0029 Score=61.27 Aligned_cols=65 Identities=8% Similarity=0.088 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 427 SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
..|..+.......|++++|...++++.+.+ |+...|..+...|...|+.++|.+.++++..+.|.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444444444444455555555555555432 34445555555555555555555555555554443
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0036 Score=60.61 Aligned_cols=134 Identities=9% Similarity=-0.012 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC--------CHHHHHHHHHHhh
Q 010740 141 QPKEGTYMKLLVLLGKS-----GQPELARKVFNEMVEEGIEPT-PELYTALLAAYCRNS--------LIDEAFVTLNQMK 206 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~ 206 (502)
+.+..+|...+++.... ++.+.|..+|++..+.. |+ ...|..+..++.... +...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45556666666554332 22556777777777653 33 344443333322210 1222223333222
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010740 207 TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE 278 (502)
Q Consensus 207 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 278 (502)
.....+.+...|..+.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 211112333444444444444455555555555554442 3444555555555555555555555555443
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.011 Score=53.05 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMK-----ADTK-TFCCLINGYANAGLFHKVISSVRLASK 419 (502)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (502)
+..++..+.+.|++++|.++|+++...-.. .+.. .|...+-++...|++..|.+.++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555555555555443211 1111 122223344445555555555555543
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=6.6e-05 Score=41.23 Aligned_cols=30 Identities=50% Similarity=0.558 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGI 175 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 175 (502)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888888777653
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.0042 Score=59.49 Aligned_cols=246 Identities=13% Similarity=0.117 Sum_probs=150.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010740 176 EPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL------IKACVDAMRFELIETLYQDMDERSVTPN 249 (502)
Q Consensus 176 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~~a~~~~~~~~~~g~~~~ 249 (502)
.|.+..|..+.......-.++.|...|-+.....|++.-...-... ...-+--|++++|+++|-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 5888999999888888888888888888876654443211111111 111122478899999998887662
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740 250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG 329 (502)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (502)
..+..+.+.|++-.+.++++.--....-..-...|+.+...+.....|++|.+.|..-.. ....+.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence 346677788888877777654211100111245788888888888888888888875432 134566
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010740 330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK 409 (502)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 409 (502)
++.+..++++...+...+. -+....-.+..++.+.|.-++|.+.|-+-- .|- ..+..|...+++.+
T Consensus 831 cly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHH
Confidence 6777666666555544433 366777788888888888888887764422 121 34566777777777
Q ss_pred HHHHHHHHHhcCCC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 410 VISSVRLASKLQIA-----------ENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 410 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
|.++-+...-..+. .+.. .---|..+.+.|+.-+|.+++.+|.+
T Consensus 897 avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence 77765532211000 0000 11224455666766666667666654
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.012 Score=46.77 Aligned_cols=130 Identities=14% Similarity=0.076 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCCCHHH
Q 010740 317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG---MKADTKT 393 (502)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~ 393 (502)
..|++..-..|..+....|++.+|...|.+...--+..|....-.+.++....++...|...++++-+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3566666666666666777777777777666665555566666666666666666666666666665542 1222 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK 450 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 450 (502)
...+.+.+...|.+.+|...|+..... -|+...-......+.++|+.+++..-+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 334556666666666666666666653 3333333333444556665555544333
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.0025 Score=57.04 Aligned_cols=210 Identities=11% Similarity=0.150 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010740 108 VNTVAETFSDHVLKKQWFQALQVFEMLKE----QPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYT 183 (502)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 183 (502)
.+.+..+...+-..|+|++|.+.|..... .+....-...|.....+|.+. ++++|.+.+++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~------------ 101 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI------------ 101 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH------------
Confidence 35566666666677777777777765422 110000112333333333333 5555555555543
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCC-CCHHHHHHHH
Q 010740 184 ALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA-MRFELIETLYQDMDE----RSVT-PNTVTQNIVL 257 (502)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~----~g~~-~~~~~~~~l~ 257 (502)
..|...|++..|-+.+..+ ...|... |+++.|.+.|++..+ .|.. .-..++..+.
T Consensus 102 ---~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 102 ---EIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp ---HHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---HHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 3444455544444444332 2233333 555555555555433 1211 0123445556
Q ss_pred HHHhccCChHHHHHHHHHHHHcCC----CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHH
Q 010740 258 GGYGKAGMFDQMERVLSGMLESAT----CKPDVW-TMNTILSVFANKGQVDMMERWYEKFRNFG--IDPE--TRTFNILI 328 (502)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~ 328 (502)
..+.+.|++++|.++|+++....- .+.+.. .|-..+-++...||...|.+.+++..... +..+ ......|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 666666777777777766644211 011111 22233345556667777777776665431 1111 33445555
Q ss_pred HHHHc--cCcHHHHHHHHHHHHH
Q 010740 329 GAYGK--KRMYDKMSSVMEYMRK 349 (502)
Q Consensus 329 ~~~~~--~g~~~~a~~~~~~~~~ 349 (502)
.+|-. ...++.+..-|+.+.+
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHhCCHHHHHHHHHHHcccCc
Confidence 55544 2334555555554433
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.64 E-value=0.0012 Score=59.06 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCCh
Q 010740 357 STYNNVIEAFSDMGDAKHMEYTFEQMH----AEGMK-ADTKTFCCLINGYANAGLFHKVISSVRLASKL----QI-AENV 426 (502)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~ 426 (502)
..|..|...|.-.|+++.|+..-+.-. +.|-+ .....+..+.+++.-.|+++.|.+.|+..... |- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 457777777888899999987655432 33322 22357888999999999999999998865433 21 2234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 427 SFYNAVISACIKADDLMEMERVYKRMKEK----H-CRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
....+|...|.-..++++|+.++.+-... + ..-....+.+|..+|...|..++|+.+.+..++...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44557888888888999999887654321 1 112466888999999999999999999998887643
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.62 E-value=0.022 Score=48.13 Aligned_cols=180 Identities=14% Similarity=0.156 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQP-KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP--ELYTALL 186 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 186 (502)
.+-.....+...|++++|++.|+.+.......+ -..+.-.++.++.+.|+++.|...+++..+. -|+. .-+...+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHH
Confidence 344455566788999999999998877531122 2336667788888999999999999988776 2332 1222222
Q ss_pred HHHHhCCCHHHHHHHHHHhhcCCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPD-------VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259 (502)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 259 (502)
.+.+......... .. ..| ...+..++.-|=......+|...+..+.+. =...-..+.+.
T Consensus 85 ~g~~~~~~~~~~~-----~~-----~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~ 150 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RS-----DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHHHHH------T-----T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHhCccch-----hc-----ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 2222111111110 00 011 112333444444444455555555544432 11112235566
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 010740 260 YGKAGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMM 305 (502)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 305 (502)
|.+.|.+..|..-++.+++...-.+ .......++.+|.+.|..+.+
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777777777776532111 123445566667777666643
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.61 E-value=0.00027 Score=47.58 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=28.6
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE 173 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 173 (502)
..|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666666555442 335555555556666666666666666655554
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0041 Score=53.82 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010740 390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD---DLMEMERVYKRMKEKHCRPDSETFSI 466 (502)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~p~~~~~~~ 466 (502)
|...|..|..+|...|+++.|...|....+.. ++|...+..+..++.... +..++..+|+++...+.. |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 33444444444444444444444444444432 334444444444333221 233444444444443211 3334444
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 467 MTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
|...+...|++.+|...|+.|++..+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 444444445555555555544444433
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.0074 Score=45.45 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=21.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 010740 154 LGKSGQPELARKVFNEMVEEGIEPT--PELYTALLAAYCRNSLIDEAFVTLNQMK 206 (502)
Q Consensus 154 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 206 (502)
+-..|+.++|..+|++....|.... ...+-.+...+...|++++|+.+|++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444432222 1223333344444444444444444443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.012 Score=44.39 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=53.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChHHHHHHHHHH
Q 010740 362 VIEAFSDMGDAKHMEYTFEQMHAEGMKAD--TKTFCCLINGYANAGLFHKVISSVRLASKLQIAE---NVSFYNAVISAC 436 (502)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 436 (502)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455566777777777777776665443 2345556666677777777777776665531 11 222222334455
Q ss_pred HHcCCHHHHHHHHHHHH
Q 010740 437 IKADDLMEMERVYKRMK 453 (502)
Q Consensus 437 ~~~g~~~~a~~~~~~~~ 453 (502)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66677777776665544
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.50 E-value=0.0042 Score=51.03 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH
Q 010740 283 KPDVWTMNTILSVFAN-----KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS 357 (502)
Q Consensus 283 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (502)
..+..+|..++..|.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 4466666666666654 46677777777788888888888888888877654 3221 0111111100
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 406 (502)
. .-.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 114 -------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 112445677778888888888888888888877766554
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.48 E-value=0.00075 Score=45.37 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=41.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740 155 GKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL 221 (502)
Q Consensus 155 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 221 (502)
.+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 45677777777777777663 446667777777777777777777777777764 3554444333
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0063 Score=50.06 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 010740 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAM 229 (502)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 229 (502)
+-|++++++|... |+-||..++..+++.+.+.+
T Consensus 120 ~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 120 ECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence 4456666666553 56666666666666665544
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.42 E-value=0.087 Score=47.36 Aligned_cols=284 Identities=13% Similarity=0.064 Sum_probs=140.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHHhcCCH
Q 010740 156 KSGQPELARKVFNEMVEEGIEPTPELYTALLA--AYCRNSLIDEAFVTLNQMKTLPNCQPDVY--TYSTLIKACVDAMRF 231 (502)
Q Consensus 156 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~ 231 (502)
-.|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...|.-...+.|+.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccH
Confidence 345666666665554322 1233333333332 233457777777777777652 2222 233333344556777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHH---hcCCHHHHH
Q 010740 232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTM--NTILSVFA---NKGQVDMME 306 (502)
Q Consensus 232 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---~~g~~~~a~ 306 (502)
+.|.++-+.....-.. -...+...+...+..|+++.|+++++.-.+..-+.++..-- ..|+.+-. -..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 7777666665544222 23456667777777777777777777665544444443221 11221110 112333344
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740 307 RWYEKFRNFGIDPETR-TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE 385 (502)
Q Consensus 307 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 385 (502)
..-.+..+ +.|+.. .-..-..++.+.|+..++-.+++.+=+....|+.. ..|.+..--+.+..-+++..+.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHHHHHHHHHH
Confidence 33333332 233322 22233455666677777777777666654443321 2222222222233333332211
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 010740 386 -GMKAD-TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDLMEMERVYKRMKEK 455 (502)
Q Consensus 386 -~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 455 (502)
.++|+ ..+...+..+-...|++..|..--+.... ..|....|-.|.+.-... ||-.++..++.+....
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 12333 34455555666666666666555554444 356666666666554433 6777776666666543
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.044 Score=46.37 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH-----HH
Q 010740 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS-----TL 221 (502)
Q Consensus 147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l 221 (502)
.+.++..+.-.|.+.-...++.+..+..-+.++.....|++.-.+.|+.+.|..+|++..+..+ ..|..+++ ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence 3444555555555555555555555554344555555555555556666666655554443211 12222222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010740 222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE 278 (502)
Q Consensus 222 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 278 (502)
...+.-.+++..|...+.+....+.. |....|.-.-+..-.|+..+|.+.++.+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22333444555555555554443222 333333322233334455555555555543
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.39 E-value=0.0012 Score=43.85 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE 173 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 173 (502)
..+...|++++|+..|+.+.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556677777777777776653 445556677777777777777777777776654
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.39 E-value=0.096 Score=47.11 Aligned_cols=295 Identities=14% Similarity=0.073 Sum_probs=191.1
Q ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010740 181 LYTALLAAYC--RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC--VDAMRFELIETLYQDMDERSVTPNTVTQNIV 256 (502)
Q Consensus 181 ~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 256 (502)
-|..|-.+++ -.|+-..|.++-.+..+ -+..|....-.|+.+- .-.|+++.|.+-|+.|... .+.-.--...|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHH
Confidence 3455555544 35788888888777654 3456666666666654 4479999999999999864 11111112233
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHc
Q 010740 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG-IDPETR--TFNILIGAYGK 333 (502)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~ 333 (502)
.-.-.+.|..+.|...-+..-+.. ..-...+...+...+..|+++.|+++.+.-.... +.++.. .-..|+.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333457899999999888875542 2345788899999999999999999998776533 233332 12223322111
Q ss_pred ---cCcHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010740 334 ---KRMYDKMSSVMEYMRKLQFPWTSST-YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK 409 (502)
Q Consensus 334 ---~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 409 (502)
..+...|.+.-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+....|+.. . +..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--c
Confidence 23455555555544443 444332 2334577899999999999999999875555432 2 222344554 4
Q ss_pred HHHHHHHHHhc-CC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHH
Q 010740 410 VISSVRLASKL-QI-AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA-KEGMNDKVYALEQE 486 (502)
Q Consensus 410 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 486 (502)
+..-++...+. .+ +.|....-.+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-+++...+-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 44444433322 13 34556666777888889999998887777665 4678888888888764 55999999999988
Q ss_pred HHHh
Q 010740 487 KLQM 490 (502)
Q Consensus 487 ~~~~ 490 (502)
.++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 8764
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.02 Score=49.74 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=71.5
Q ss_pred HHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC
Q 010740 348 RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG---LFHKVISSVRLASKLQIAE 424 (502)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~ 424 (502)
...+.. |...|-.|...|...|+...|...|.+..+.. .++...+..+..++.... ...++..+++++...+ +-
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~ 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PA 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-Cc
Confidence 333443 77777777888888888888877777777652 334555555555554332 3457777777777764 55
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 425 NVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
|+.....|...+...|++.+|...|+.|.+.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6777777777778888888888888888775
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.32 E-value=0.0066 Score=53.13 Aligned_cols=100 Identities=7% Similarity=-0.019 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAEN---VSFYNAVISACIKADDLMEMERVYKRMKEKHCR--PDSETFSIMT 468 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--p~~~~~~~l~ 468 (502)
|...+..+.+.|++++|...|+.+.+.- +.+ ...+..+..+|...|++++|...|+.+.+.... .....+..+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3333333344566666666666665542 111 234555666666666666666666666653111 1233444455
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 469 EAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
..+...|+.++|.+.+++.++..|..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 55666666666666666666665543
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.25 E-value=0.095 Score=44.27 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=22.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCcH
Q 010740 432 VISACIKADDLMEMERVYKRMKEKHCRPD----SETFSIMTEAYAKEGMND 478 (502)
Q Consensus 432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~ 478 (502)
+...|.+.|.+..|..-++.+++. . |+ ......++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~-y-p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN-Y-PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-S-TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-C-CCCchHHHHHHHHHHHHHHhCChH
Confidence 444555566666666555555554 1 22 223345555555555555
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.0021 Score=43.27 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 010740 391 TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD-DLMEMERVYKRMKE 454 (502)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 454 (502)
...|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555566666666666666555543 344555555666666666 46666666655554
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.24 E-value=0.0013 Score=44.95 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=28.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
.|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.++++++..|+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 344455555555555555544221 3444444455555555555555555555554443
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.17 E-value=0.0012 Score=45.84 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 427 SFYNAVISACIKADDLMEMERVYKRMKEK----HC-RPD-SETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|+++++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677777788888888888887776643 11 122 446777788888888888888888887765
No 207
>PRK15331 chaperone protein SicA; Provisional
Probab=97.14 E-value=0.019 Score=45.29 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=61.6
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME 444 (502)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (502)
-+...|++++|..+|.-+...+. -+..-+..|..++-..+++++|+..|......+ ..|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 34567888888888887776542 244556667777777788888888887766654 3444445566777888888888
Q ss_pred HHHHHHHHHH
Q 010740 445 MERVYKRMKE 454 (502)
Q Consensus 445 a~~~~~~~~~ 454 (502)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888887776
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.14 E-value=0.15 Score=46.76 Aligned_cols=167 Identities=9% Similarity=-0.030 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHcCCCCChHHHH
Q 010740 287 WTMNTILSVFANKGQVDMMERWYEKFRNFG---IDPETRTFNILIGAYGK---KRMYDKMSSVMEYMRKLQFPWTSSTYN 360 (502)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (502)
.+...++-+|....+++..+++.+.+...- +.-...+--...-++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456667888889999999988887641 12222333344445566 788888888888866666666888888
Q ss_pred HHHHHHHhc---------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-H---HHHHHH---H-HHHhcCC-
Q 010740 361 NVIEAFSDM---------GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF-H---KVISSV---R-LASKLQI- 422 (502)
Q Consensus 361 ~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~---~a~~~~---~-~~~~~~~- 422 (502)
.+.+.|-.. ...+.|...|.+.-+. .||..+--.++..+...|.. + +..++- . ...+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 887766421 1244555555554442 34443322222222233321 1 222222 0 1111121
Q ss_pred --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 423 --AENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 423 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
..+-..+..++.++.-.|+.++|.+..++|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 122333445555555566666666666666543
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.13 E-value=0.01 Score=47.18 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 010740 107 WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVE-----EGIEPTPEL 181 (502)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 181 (502)
+...+..++..+...|++++|+.+.+.+.... +.+...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34566666667777888888888888888764 66777888888888888888888888887753 377777665
Q ss_pred H
Q 010740 182 Y 182 (502)
Q Consensus 182 ~ 182 (502)
-
T Consensus 139 ~ 139 (146)
T PF03704_consen 139 R 139 (146)
T ss_dssp H
T ss_pred H
Confidence 4
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.12 E-value=0.011 Score=51.82 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=52.2
Q ss_pred HhhhcHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCC
Q 010740 119 VLKKQWFQALQVFEMLKEQPFYQPK---EGTYMKLLVLLGKSGQPELARKVFNEMVEEG--IEPTPELYTALLAAYCRNS 193 (502)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 193 (502)
...|++++|+..|+.+.+.. +-+ ..++..+...|...|++++|...|+.+.+.- -+.....+-.+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 44567777777777666542 212 2456666677777777777777777766541 1112344445555666667
Q ss_pred CHHHHHHHHHHhhc
Q 010740 194 LIDEAFVTLNQMKT 207 (502)
Q Consensus 194 ~~~~a~~~~~~~~~ 207 (502)
+.++|..+|+++.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766665
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.3 Score=47.53 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=38.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740 157 SGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIET 236 (502)
Q Consensus 157 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 236 (502)
-|++++|.++|-+|.+++ ..|..+.+.|++-...++++.--....-..-...|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666555432 23444555566655555554321110001113456666666666666666666
Q ss_pred HHHH
Q 010740 237 LYQD 240 (502)
Q Consensus 237 ~~~~ 240 (502)
.|..
T Consensus 818 yY~~ 821 (1189)
T KOG2041|consen 818 YYSY 821 (1189)
T ss_pred HHHh
Confidence 6544
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.21 Score=45.21 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436 (502)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (502)
.+.+..+.-+...|+...|.++-.+.. -||..-|...+.+++..++|++-.++... .-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 355566777788899988888866653 47889999999999999999988876542 22345689999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010740 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE 486 (502)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (502)
.+.|...+|..++.++. + ..-+..|.+.|++.+|.+..-+
T Consensus 248 ~~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999988721 2 4446778899999888766433
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.02 E-value=0.011 Score=46.96 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE-----KHCRPDSETFS 465 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~~ 465 (502)
++..++..+...|++++|..+++.+.... |.+...|..++.+|...|+..+|.++|+++.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34445566667777777777777777664 55677777777777777777777777776642 37777666543
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.90 E-value=0.019 Score=43.78 Aligned_cols=98 Identities=10% Similarity=0.010 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
|..++..++.++++.|+++....+++..-. +.++... ..+. ........|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 345677777777777777777777665432 1111000 0000 111123445666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHh
Q 010740 223 KACVDAMRFELIETLYQDMDE-RSVTPNTVTQNIVLGGYG 261 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~ 261 (502)
.+|+..+++..|.++++...+ -+++.+..+|..|+.-..
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 666666666666666655443 345555556666555443
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.87 E-value=0.11 Score=41.02 Aligned_cols=89 Identities=10% Similarity=-0.078 Sum_probs=65.1
Q ss_pred HHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 010740 187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF 266 (502)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 266 (502)
.-+...|++++|..+|+-+...+ .-+..-|..|..++...+++++|...|......+.. |...+.....+|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 34457788888888888776643 455666777777788888888888888876665432 455556667788888888
Q ss_pred HHHHHHHHHHHH
Q 010740 267 DQMERVLSGMLE 278 (502)
Q Consensus 267 ~~a~~~~~~~~~ 278 (502)
+.|...|...++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888888765
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.85 E-value=0.033 Score=42.44 Aligned_cols=56 Identities=7% Similarity=-0.044 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740 244 RSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK 299 (502)
Q Consensus 244 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (502)
....|+..+..+++.+|+..|++..|+++++...+..+++.+...|..|++-+...
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 34567778888888888888888888888888877777777777777777655443
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.81 E-value=0.27 Score=42.00 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQP-KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
+.+-.....+.|+|++|.+.|+.+..+....| ...+.-.++.++-+.++++.|+..+++....--.....-|...|.++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33344445567888888888887776532222 23355566667777788888888777777653222223344444444
Q ss_pred H
Q 010740 190 C 190 (502)
Q Consensus 190 ~ 190 (502)
+
T Consensus 117 s 117 (254)
T COG4105 117 S 117 (254)
T ss_pred H
Confidence 4
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.81 E-value=0.0066 Score=41.38 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 154 LGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 154 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
|.+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444432 23333444444444444444444444444443
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.68 E-value=0.17 Score=48.67 Aligned_cols=51 Identities=8% Similarity=-0.037 Sum_probs=25.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010740 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH 383 (502)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 383 (502)
...+...+.+...+..|-++|..|-.. ..+++.....++|.+|..+-+...
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence 333333344445555555555554331 234455555666666665555443
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.65 E-value=0.18 Score=37.88 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 426 VSFYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
+...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3333333344444444444444444333333
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.64 E-value=0.0086 Score=41.46 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKL----QI-AEN-VSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
+++.+...|...|++++|+..+++..+. |- .+. ..++..+..+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555666666666666666554432 10 111 44566667777777777777777766543
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.4 Score=41.76 Aligned_cols=167 Identities=12% Similarity=0.063 Sum_probs=96.8
Q ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740 90 PIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNE 169 (502)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 169 (502)
+-..+.+.+++.-.. .- .....-.......|++.+|..+|..+.... +-+...-..++.+|...|+++.|..++..
T Consensus 118 Pesqlr~~ld~~~~~-~~-e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 118 PESQLRQFLDKVLPA-EE-EEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred cHHHHHHHHHHhcCh-HH-HHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344556666554322 11 222223445667888888888888877663 44556777788888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC
Q 010740 170 MVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER--SVT 247 (502)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~ 247 (502)
+....-.........-|..+.+.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |..
T Consensus 194 lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 194 LPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 765421111222223344455555555444554554442 346666666777777777777777666555543 222
Q ss_pred CCHHHHHHHHHHHhccC
Q 010740 248 PNTVTQNIVLGGYGKAG 264 (502)
Q Consensus 248 ~~~~~~~~l~~~~~~~g 264 (502)
|...-..++..+.-.|
T Consensus 271 -d~~~Rk~lle~f~~~g 286 (304)
T COG3118 271 -DGEARKTLLELFEAFG 286 (304)
T ss_pred -CcHHHHHHHHHHHhcC
Confidence 3444445555444444
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.57 E-value=0.3 Score=47.20 Aligned_cols=170 Identities=13% Similarity=0.042 Sum_probs=111.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh------HHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHH
Q 010740 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS------STYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMKADTKT 393 (502)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 393 (502)
+..+++..+=.|+-+.+++.+....+.+--..+ -.|..++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 345555556667888888777766553211111 234444444433 35678899999998875 577666
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740 394 FCCL-INGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE 469 (502)
Q Consensus 394 ~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 469 (502)
|... .+.+...|++++|++.++.+.... -+.....+--+...+.-.++|++|.+.|..+.+..- .+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5433 456677899999999998765421 122344566677788889999999999999998632 24445544443
Q ss_pred -HHHhcCCc-------HHHHHHHHHHHHhhhhccc
Q 010740 470 -AYAKEGMN-------DKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 470 -~~~~~g~~-------~~A~~~~~~~~~~~~~~~~ 496 (502)
++...|+. ++|.++++++........+
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG 382 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 34578888 8899999988887655433
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.4 Score=40.86 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=91.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH----
Q 010740 323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI---- 398 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~---- 398 (502)
+.+.++.++...|.+.-....++++++...+.++.....|++.-.+.||.+.|...|++..+..-+.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566677777778888888888888887767788888888888888888888888888776544344444444333
Q ss_pred -HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 399 -NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 399 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
..|.-++++..|...+.++...+ +.++...|.-.-+..-.|+..+|++.++.|.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34455667777777777776654 3344444444444445688888888888888763
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.55 E-value=0.14 Score=48.59 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=105.1
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
.+..+.+++++++.++.+.-.-.+.+ .....+.++..+-+.|-.+.|+++...-. .-.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 44556688999988777522111102 24568899999999999999998865432 23456678899
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (502)
++.|.++.++. .+...|..|.+.....|+++.|++.|++..+ +..|+-.|.-.|+.+.-.++.+
T Consensus 334 L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 99998775443 4677899999999999999999999988653 4566777888888888888777
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740 275 GMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEK 311 (502)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (502)
....++ -++....++.-.|+.++..+++.+
T Consensus 398 ~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERG-------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHcc-------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 764432 255566666677888887777754
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.55 E-value=0.084 Score=45.25 Aligned_cols=75 Identities=25% Similarity=0.297 Sum_probs=41.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740 130 VFEMLKEQPFYQPKEGTYMKLLVLLGKS----------------GQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS 193 (502)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 193 (502)
.++.|.+-| +.-|..+|+.|++.+-+. .+-+-+.+++++|...|+.||..+-..++.++.+.+
T Consensus 94 ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 94 ALKYMKEYG-VERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHhc-chhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 334444444 455555666555544332 123446677777777777777777777777776665
Q ss_pred C-HHHHHHHHHHh
Q 010740 194 L-IDEAFVTLNQM 205 (502)
Q Consensus 194 ~-~~~a~~~~~~~ 205 (502)
- ..+...++-.|
T Consensus 173 ~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 173 FPTKKVKRMLYWM 185 (406)
T ss_pred ccHHHHHHHHHhh
Confidence 4 23333333334
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.45 E-value=0.75 Score=42.59 Aligned_cols=81 Identities=5% Similarity=0.103 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhcCCCC----ChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 010740 407 FHKVISSVRLASKLQIAE----NVSFYNAVISA--CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKV 480 (502)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 480 (502)
+..-..+-+-+.+.|++| +...-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 344444444555567665 34445555554 4568899888755444443 789999999999999999999999
Q ss_pred HHHHHHHHH
Q 010740 481 YALEQEKLQ 489 (502)
Q Consensus 481 ~~~~~~~~~ 489 (502)
.+++.+...
T Consensus 515 ~~~l~~LP~ 523 (549)
T PF07079_consen 515 WEYLQKLPP 523 (549)
T ss_pred HHHHHhCCC
Confidence 999987543
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.42 E-value=0.099 Score=39.11 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=43.9
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHcCC
Q 010740 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF---YNAVISACIKADD 441 (502)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 441 (502)
+++..|+.+.|++.|.+.+.. .+-....||.-..++.-+|+.++|++-+++..+..-.-.... |-.-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555666666666555543 122344555555555555555555555555554421112111 1122223444555
Q ss_pred HHHHHHHHHHHHHCC
Q 010740 442 LMEMERVYKRMKEKH 456 (502)
Q Consensus 442 ~~~a~~~~~~~~~~g 456 (502)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555544
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.13 Score=44.22 Aligned_cols=102 Identities=10% Similarity=0.114 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHH
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKLQ--IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC-RP-DSETFSIMT 468 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p-~~~~~~~l~ 468 (502)
.|+.-+. +...|++..|...|...++.. -.-....+-.|..++...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444333 345566777777777776652 111233455677778888888888888877776421 12 245667777
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740 469 EAYAKEGMNDKVYALEQEKLQMLLEAS 495 (502)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 495 (502)
.+..+.|+.++|...|++..+..|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 777888888888888888887776654
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.35 E-value=0.82 Score=42.02 Aligned_cols=169 Identities=15% Similarity=0.079 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHhhcCCCCCCCHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEG---IEPTPELYTALLAAYCR---NSLIDEAFVTLNQMKTLPNCQPDVYT 217 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 217 (502)
..+...++-.|....+++...++++.+.... +.-+..+-....-++.+ .|+.++|++++..+... ...++..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHH
Confidence 3355566667888888999999998887651 12233333344555666 78889999998884432 33577777
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH----HHHHHH---HHHHHcCC
Q 010740 218 YSTLIKACVD---------AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD----QMERVL---SGMLESAT 281 (502)
Q Consensus 218 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~~~~~~ 281 (502)
|..+...|-. ....++|...|.+.-+. .||...--.++..+...|... +..++- ..+..+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 7777666532 12345666666654443 234333222333333333211 111111 11111111
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 282 ---CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF 315 (502)
Q Consensus 282 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (502)
-..+-+.+.+++.++.-.|++++|.+..++|...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1234445555556666666666666666665543
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.34 E-value=0.0046 Score=37.07 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740 463 TFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
+|..+...|.+.|++++|.++++++++..|++...|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 344555555555555555555555555555555444
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.16 Score=46.19 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 010740 288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS 367 (502)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (502)
++..+.-+|.+.+++.+|++.-++.+..+ +.|....-.-..+|...|+++.|+..|..+++..+. |-..-+.++.+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 45555566666666666666666666554 555555555566666666666666666666665443 3333333333333
Q ss_pred hcCCHh-HHHHHHHHHH
Q 010740 368 DMGDAK-HMEYTFEQMH 383 (502)
Q Consensus 368 ~~~~~~-~a~~~~~~m~ 383 (502)
+..... ...++|..|.
T Consensus 337 k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 332222 2244555554
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.30 E-value=0.18 Score=45.00 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740 226 VDAMRFELIETLYQDMDER--SVTPNTVTQNIVLGGYGKAGMFDQMERV 272 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (502)
....+.+.++..+.....+ +...-..++..+..+.++.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 3455666666666554433 0111223444455555556655555443
No 234
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.3 Score=43.90 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=68.5
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQP---KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
+.+.+.+++|+..-+..... .| -.......|..+...|++++|-...-.|. .-+..-|..-+..+...++
T Consensus 366 ll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccccc
Confidence 55778999999888776543 33 34577788899999999999999998887 3466777777777777766
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD 227 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 227 (502)
......+ +... .-..+...|..++..+..
T Consensus 439 l~~Ia~~---lPt~-~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPY---LPTG-PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhcc---CCCC-CcccCchHHHHHHHHHHH
Confidence 5544333 3321 112456678877777766
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.29 E-value=0.026 Score=52.27 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010740 389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV----SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF 464 (502)
Q Consensus 389 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 464 (502)
.+...++.+..+|...|++++|+..|+..++.+ |+. ..|..+..+|...|+.++|+..+++..+.+ ...|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhH
Confidence 356789999999999999999999999998864 543 358889999999999999999999999852 1123
Q ss_pred HHHHH--HHHhcCCcHHHHHHHHHHHHhh
Q 010740 465 SIMTE--AYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 465 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
..+.. .+....+..+..++++++.+-+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 21111 1122234446666777666654
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.26 E-value=0.4 Score=37.63 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=28.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740 396 CLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 472 (502)
.++..|.+.+.++++..++..+.. +...+..+... ++.+.|.+++.+- -+...|..++..+.
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 344555555555555555543321 12222333333 5555555555441 14555555555444
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.25 E-value=0.091 Score=48.81 Aligned_cols=67 Identities=10% Similarity=-0.056 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh---HHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740 318 DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS---STYNNVIEAFSDMGDAKHMEYTFEQMHAE 385 (502)
Q Consensus 318 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 385 (502)
+.+...++.+..+|.+.|++++|+..|+...+.+.. +. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344566777777777777777777777777766444 22 34777777777777777777777777664
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.23 E-value=0.23 Score=47.30 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 010740 287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF 366 (502)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (502)
...+.++.-+.+.|..+.|+.+-..-. .-.....+.|+++.|.++.++. .+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 334455555555555555554432211 1122233445555555443211 1444555555555
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 010740 367 SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME 446 (502)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 446 (502)
...|+++-|.+.|++..+ |..|+-.|...|+.+.-.++.+.....| -++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHH
Confidence 555555555555554332 3344444455555554444444444433 1333333344445555544
Q ss_pred HHH
Q 010740 447 RVY 449 (502)
Q Consensus 447 ~~~ 449 (502)
+++
T Consensus 423 ~lL 425 (443)
T PF04053_consen 423 DLL 425 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.76 Score=40.15 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=78.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 010740 152 VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF 231 (502)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 231 (502)
......|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.... -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34556677777777777776653 3345556667777777777777777777765431 001111111223334444444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740 232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300 (502)
Q Consensus 232 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (502)
.+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.++.+..-.-|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444443332 225566666667777777777777766666554322334444455555554444
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.17 Score=45.97 Aligned_cols=129 Identities=15% Similarity=0.004 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCC----CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPF----YQP---------KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEP 177 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~----~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 177 (502)
...--..+.+.|+|..|..-|+.+...-. .++ -..++..+.-++.+.+++..|++..++.+..+ +.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~ 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PN 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence 33344567788999999998887543210 111 11244455556666666666666666666554 45
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 010740 178 TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL-IETLYQDMD 242 (502)
Q Consensus 178 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~ 242 (502)
|....-.-..+|...|+++.|+..|+++.+.. +.|..+-+.|+.+..+...+.. ..++|..|.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555666666666666666666666532 3333333333333333333222 244455444
No 241
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.15 E-value=0.63 Score=44.98 Aligned_cols=88 Identities=9% Similarity=0.047 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------
Q 010740 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE--------- 462 (502)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~--------- 462 (502)
.+...+...+.+...+..|-++|..|-+. ..+++.....++|++|..+-+...+ +.||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhh
Confidence 33444444444455555566666554332 2455556666666666666655443 223322
Q ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 463 --TFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 463 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
-|.-.-.+|.+.|+..+|.+++++....
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222234667777777777777775543
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=0.78 Score=39.43 Aligned_cols=224 Identities=13% Similarity=0.030 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740 229 MRFELIETLYQDMDERSVTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER 307 (502)
Q Consensus 229 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 307 (502)
+....+...+.......... ....+......+...+.+..+...+...............+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455555555554442221 24555556666666666666666666654310112334445555555666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740 308 WYEKFRNFGIDPETRTFNILIG-AYGKKRMYDKMSSVMEYMRKLQF--PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA 384 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 384 (502)
.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665433222 111222222 45556666666666665543211 01222233333334445555555555555554
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 385 EGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
.........+..+...+...++++.+...+....... +.....+..+...+...+..+++...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3211123444555555555555555555555554432 11122233333333344445555555555544
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.03 E-value=0.84 Score=39.07 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=103.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---
Q 010740 295 VFANKGQVDMMERWYEKFRNFG--IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM--- 369 (502)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 369 (502)
.-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++++.|+..+++.....+.....-|...|.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 3457788888888888887542 12335566667777888888888888888887776555555555555555422
Q ss_pred ----CCHhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCH
Q 010740 370 ----GDAKH---MEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDL 442 (502)
Q Consensus 370 ----~~~~~---a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 442 (502)
.|... |..-|+++++. -|+. .-...|...+..+...= ...=-.+.+.|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~L----A~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDAL----AGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCh
Confidence 22222 33333333332 2222 11222222222222110 00012456778888888
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 443 MEMERVYKRMKEKHCRPD---SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 443 ~~a~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
..|..-+++|++. .+-+ ...+..+..+|...|-.++|.+.-+-+....|+
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 8888888888876 3222 334556677888888888887766554444433
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.02 E-value=1.1 Score=40.29 Aligned_cols=124 Identities=12% Similarity=0.099 Sum_probs=54.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH----cCCCCCh-HHH--
Q 010740 292 ILSVFANKGQVDMMERWYEKFRNFG-----IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK----LQFPWTS-STY-- 359 (502)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~-~~~-- 359 (502)
+..++...+.++++++.|+.....- --....++..|...|.+..++++|.-+..+..+ .++. |. .-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 4444555555556665555544311 012234455555566666666655544333222 2222 11 111
Q ss_pred ---HHHHHHHHhcCCHhHHHHHHHHHH----HcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740 360 ---NNVIEAFSDMGDAKHMEYTFEQMH----AEGMKAD-TKTFCCLINGYANAGLFHKVISSVRL 416 (502)
Q Consensus 360 ---~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (502)
-.+.-++...|....|.+.-++.. ..|-.+. ......+...|...|+.+.|+.-|+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 122233444555555554444432 2221111 12334455566666666666555543
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.19 Score=43.25 Aligned_cols=88 Identities=23% Similarity=0.183 Sum_probs=45.4
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhC
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPK---EGTYMKLLVLLGKSGQPELARKVFNEMVEEG--IEPTPELYTALLAAYCRN 192 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 192 (502)
+...|++..|.+-|....+.. +-+ ..++..|...+...|+++.|..+|..+.+.- .+--+..+-.|..+..+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 344555666666665555432 211 2244555566666666666666665555431 011134555555555555
Q ss_pred CCHHHHHHHHHHhhc
Q 010740 193 SLIDEAFVTLNQMKT 207 (502)
Q Consensus 193 g~~~~a~~~~~~~~~ 207 (502)
|+.++|..+|+++.+
T Consensus 229 ~~~d~A~atl~qv~k 243 (262)
T COG1729 229 GNTDEACATLQQVIK 243 (262)
T ss_pred cCHHHHHHHHHHHHH
Confidence 666666666655554
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.94 E-value=0.018 Score=32.61 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 463 TFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
+|..|...|.+.|++++|++++++++....+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4667788888888888888888886655443
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.92 E-value=1.2 Score=39.87 Aligned_cols=164 Identities=11% Similarity=0.094 Sum_probs=76.1
Q ss_pred HHHHHHHHHHccCcH---HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 323 TFNILIGAYGKKRMY---DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 399 (502)
++..++.+|...+.. ++|..+++.+...... .+..+..-+..+.+.++.+++.+++.+|+..- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 445556666655543 3444455555433322 34444444555555667777777777776542 112233333333
Q ss_pred HH---HhcCChHHHHHHHHHHHhcCCCCChH-HHHH-HHHH---HHHcC------CHHHHHHHHHHHHHC-CCCCCHHHH
Q 010740 400 GY---ANAGLFHKVISSVRLASKLQIAENVS-FYNA-VISA---CIKAD------DLMEMERVYKRMKEK-HCRPDSETF 464 (502)
Q Consensus 400 ~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~~---~~~~g------~~~~a~~~~~~~~~~-g~~p~~~~~ 464 (502)
.+ ... ....+...+..+....+.+... .... ++.. ....+ .++...++++..... +.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 222 2344555554444433344332 1111 1111 11111 144444445533222 222333332
Q ss_pred H---HH----HHHHHhcCCcHHHHHHHHHHHH
Q 010740 465 S---IM----TEAYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 465 ~---~l----~~~~~~~g~~~~A~~~~~~~~~ 489 (502)
. ++ +..+.+.+++++|.++++-.+.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2 22 2346678899999999986653
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.92 E-value=1.2 Score=41.92 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 395 CCLINGYANAGLFHKVISSVRLASKLQ-IAENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
..+..++.+.|+.++|++.++++.+.. ...+..+...|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 445556666777777777777665432 222344566677777777777777777777654
No 249
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.89 E-value=1.2 Score=39.86 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--c----CcHHHHHHHHHHHHHcCCC---CChHHHHHHHHHHHhcCC--
Q 010740 303 DMMERWYEKFRNFGIDPETRTFNILIGAYGK--K----RMYDKMSSVMEYMRKLQFP---WTSSTYNNVIEAFSDMGD-- 371 (502)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-- 371 (502)
++.+.+++.|.+.|..-+..+|-+....... . ....++..+++.|.+..+- ++-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566677777777777776666543332222 1 2245677777777776432 233344444333 2222
Q ss_pred --HhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740 372 --AKHMEYTFEQMHAEGMKADTK--TFCCLINGYANAGL--FHKVISSVRLASKLQIAENVSFYNAVISAC 436 (502)
Q Consensus 372 --~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (502)
.+.++.+|+.+.+.|...+.. ....++..+..... ...+.++++.+.+.|++.....|..+.-..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 345666777777766544322 23333322222211 345666677777777776666665554433
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.86 E-value=0.23 Score=38.37 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQP-KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
+........+.|+|++|++.|+.+..+-...+ ...+...|+.+|.+.+++++|...+++.++..-.....-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 34445566788999999999999988732222 23467788999999999999999999999874222223455555554
Q ss_pred HhC
Q 010740 190 CRN 192 (502)
Q Consensus 190 ~~~ 192 (502)
+..
T Consensus 93 ~~~ 95 (142)
T PF13512_consen 93 SYY 95 (142)
T ss_pred HHH
Confidence 443
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.85 E-value=1.9 Score=41.62 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=48.5
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhCCCHH
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLG-KSGQPELARKVFNEMVEE-GIE-PTPELYTALLAAYCRNSLID 196 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~ 196 (502)
+.|..+.+.++|+..... ++.+...|......+. ..|+.+.....|+..+.. |.. .+...|...|.--..++++.
T Consensus 91 klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 346666666666665553 4445555554443333 445666666666666543 211 23445566666556666666
Q ss_pred HHHHHHHHhhc
Q 010740 197 EAFVTLNQMKT 207 (502)
Q Consensus 197 ~a~~~~~~~~~ 207 (502)
....+|+++.+
T Consensus 169 ~v~~iyeRile 179 (577)
T KOG1258|consen 169 RVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHh
Confidence 66666666665
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.35 Score=42.75 Aligned_cols=151 Identities=6% Similarity=-0.051 Sum_probs=84.1
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE---GIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
+|++.+|-..++++.+. +|-|..++...=++|.-.|+.+.-...+++.... +++-...+...+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45666666666666654 4556666666666777777777666666666543 222122333334445556677777
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER---SVTPNTVTQNIVLGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (502)
|.+.-++..+.+ +.|...-.++...+-..+++.++.+++.+-... +.-.-..-|=...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 777777766643 556666666666666677777776665543221 000001111122223445567777777776
Q ss_pred H
Q 010740 275 G 275 (502)
Q Consensus 275 ~ 275 (502)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.76 E-value=1.6 Score=41.25 Aligned_cols=169 Identities=9% Similarity=0.043 Sum_probs=96.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (502)
++...-+.++.++-++.-+++.+. .|+ ...|..|.. -......+|.++|++..+.|- ..+..-- .....
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei---~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~ 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI---NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHH 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh---hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhcc
Confidence 444445667777777777777664 333 233333322 234557889999988876541 1111000 00011
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCChHHHHH
Q 010740 193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVT-PNTVTQNIVLGGYGKAGMFDQMER 271 (502)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~ 271 (502)
|. .++.+... ...+-..+-..+..++.+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..
T Consensus 244 g~------~~e~~~~R-dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 244 GH------FWEAWHRR-DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred cc------hhhhhhcc-ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 11 11112111 12233444456777888899999999999999865322 244577789999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740 272 VLSGMLESATCKPDVWTMNTILSVFANK 299 (502)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (502)
++.+.-+....+.-...|+..+--+...
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 9988732211122345566655433333
No 254
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.73 E-value=1.7 Score=40.38 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740 355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA---DTKTFCCLINGYANAGLFHKVISSVRLASK 419 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (502)
...+|..++..+.+.|.++.|...+.++...+... ++.....-.+..-..|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888888888888888888887643211 334444556667778888888888877766
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.69 E-value=0.12 Score=44.25 Aligned_cols=103 Identities=14% Similarity=0.253 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHH
Q 010740 355 TSSTYNNVIEAFSDM-----GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFY 429 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (502)
|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|..|++.+-+.. +.|. .++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHH
Confidence 666676666666543 456666677778888888888888888877654432 1121 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740 430 NAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476 (502)
Q Consensus 430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 476 (502)
..+.-.|-+ +-+-++.++++|...|+.||..+-..|++++.+.|-
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222222 223466777777777777787777777777776664
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.67 E-value=0.78 Score=35.95 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=39.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS 193 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 193 (502)
++..+...+.......+++.+...+ ..+...++.++..|++.+ .....+.+.. ..+......+++.|.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 3444444555666666666665554 244455666666665543 2222222221 112222333555555555
Q ss_pred CHHHHHHHHHHh
Q 010740 194 LIDEAFVTLNQM 205 (502)
Q Consensus 194 ~~~~a~~~~~~~ 205 (502)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.65 E-value=1.5 Score=39.14 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=60.8
Q ss_pred HhhhcHHHHHHHHHHHHhCC-CCCCCHH-----HHHHHHHHHHhcC-ChHHHHHHHHHHHHc--------CCCCCH----
Q 010740 119 VLKKQWFQALQVFEMLKEQP-FYQPKEG-----TYMKLLVLLGKSG-QPELARKVFNEMVEE--------GIEPTP---- 179 (502)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~---- 179 (502)
.+.|+.+.|..++.++.... ...|+.. .+..+.......+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35788888888888776543 1233322 1222233334445 777766666654432 111221
Q ss_pred -HHHHHHHHHHHhCCC---HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 180 -ELYTALLAAYCRNSL---IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 180 -~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 244 (502)
.++..++.+|...+. .++|..+++.+.... +-....+..-+..+.+.++.+.+.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 334445555555444 233444554554322 122333333444444455666666666666554
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.42 Score=42.29 Aligned_cols=155 Identities=8% Similarity=-0.081 Sum_probs=104.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH----HHHHHHHHHHhcCCH
Q 010740 297 ANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS----TYNNVIEAFSDMGDA 372 (502)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 372 (502)
-..|+..+|-..++++++ ..|.|...+..-=.+|...|+.+.-...++++... ..+|.. .-..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 357788888888888887 45777777887788888888888888888877654 112332 223334455678889
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 010740 373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACIKADDLMEMERVY 449 (502)
Q Consensus 373 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 449 (502)
++|++.-++..+.+ +.|.-.-..+...+.-.|+..++.++..+-...- .-.-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99988888877754 4466666777777788888888888776543321 0111222333444556678889999998
Q ss_pred HHHHH
Q 010740 450 KRMKE 454 (502)
Q Consensus 450 ~~~~~ 454 (502)
++-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 75443
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.62 E-value=3.6 Score=43.22 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFY--QPKEGTYMKLLVLLGKS-GQPELARKVFNEMVEEGIEPTPELYTAL 185 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (502)
..+.+.++.++.+++|.+|+++.+.-+-.-.+ ..+...|..-+.++.+. ++.+-....+-.+...++ +...|...
T Consensus 678 ~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDv--tk~~y~~~ 755 (1265)
T KOG1920|consen 678 ILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDV--TKTMYSST 755 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchh--hhhhcccc
Confidence 45666777888889999988877654322111 12233444444455443 445544445555543321 11222111
Q ss_pred H----HHHHhC----CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 010740 186 L----AAYCRN----SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAM--RFELIETLYQDMDE 243 (502)
Q Consensus 186 ~----~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~ 243 (502)
. ..|... .+.+...+.++..... ..|+ .....++..|.+.+ .++++++...+...
T Consensus 756 ~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~--~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 756 SGSGKQVYMSRDPYDNKVNSVCDAVRNALER--RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred ccccceeEEeccchhhHHHHHHHHHHHHHhh--cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1 011111 2233444444444432 2455 44556778888877 67777777776664
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.60 E-value=0.49 Score=36.57 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=28.4
Q ss_pred HHhcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 366 FSDMGDAKHMEYTFEQMHAEGM--KADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
..+.|++++|.+.|+.+...-. .-....-..|+.+|.+.+++++|...++..++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455666666666666554311 112233444555555666666666666555554
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=95.58 E-value=2 Score=40.33 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
+|.++-++..+.+ .-|......+..+....++++.|...|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444443 2344444444444444555555555555555543 2233334444444444555555555555544
Q ss_pred H
Q 010740 454 E 454 (502)
Q Consensus 454 ~ 454 (502)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=1.3 Score=37.52 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010740 289 MNTILSVFANKGQVDMMERWYEKFRNFG---IDPETRTFNILIGAYGKKRMYDKMSSV 343 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~ 343 (502)
|-..|-.+.-..|+..|.+.++.--+.+ -+-+..+...|+.+|-. |+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence 3344444555556666666665533221 12334455555555433 555554444
No 263
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.26 E-value=1.3 Score=36.11 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=64.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740 397 LINGYANAGLFHKVISSVRLASKLQIAENVS--FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE 474 (502)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 474 (502)
+...+...|++++|..-++.........+.. +--.|.+.....|.+++|+..++...+.++ .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3456778888888888888766542222211 122355667788899999988888776543 233344556788889
Q ss_pred CCcHHHHHHHHHHHHhh
Q 010740 475 GMNDKVYALEQEKLQML 491 (502)
Q Consensus 475 g~~~~A~~~~~~~~~~~ 491 (502)
|+.++|..-|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999888875
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=1.2 Score=35.43 Aligned_cols=137 Identities=11% Similarity=0.104 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH-
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPE-LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL- 221 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 221 (502)
...|..-++ +.+.+..++|+.-|..+.+.|...-+. ..-.+.......|+...|+..|+++-....++.-..-...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334544444 345666777888888877776432221 22233445566788888888888876542221111111222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 010740 222 -IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT 281 (502)
Q Consensus 222 -l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 281 (502)
.-.+...|.++......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|.++....+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ 198 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQ 198 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcccc
Confidence 223456777888877777776666555566666777777788888888888888766443
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.19 E-value=0.056 Score=30.00 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
.+|..+..+|...|++++|++.++++++..|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45777777888888888888888888877664
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.19 E-value=0.93 Score=34.14 Aligned_cols=92 Identities=16% Similarity=0.025 Sum_probs=65.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHh
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPE---LYTALLAAYCR 191 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 191 (502)
...+...|+.+.|++.|.....- .+-....||.-..++.-+|+.++|++=+++.++..-..+.. .|..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 34567788888888888887765 35567788888888888888888888888887763233332 23334455666
Q ss_pred CCCHHHHHHHHHHhhcC
Q 010740 192 NSLIDEAFVTLNQMKTL 208 (502)
Q Consensus 192 ~g~~~~a~~~~~~~~~~ 208 (502)
.|+.+.|..-|+..-+.
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 77888888777777664
No 267
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=1.7 Score=36.84 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
...|..-..+|....++++|...+.+..+- ...+...|. .. ..++.|.-+.+++.+. +.-+..|+--..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl---sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL---SEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh---HHHHHHHHHHHH
Confidence 345666667777788888888777766532 122222221 11 2235555555555542 223344555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHhc
Q 010740 224 ACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES----ATCKPDVWTMNTILSVFANK 299 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ 299 (502)
.|...|..+.|-..+++.-+. ...-++++|++++.+...- ....--...+...-..+.+.
T Consensus 100 lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 677777776666655554321 1122333344444332210 00000112223333445555
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCC
Q 010740 300 GQVDMMERWYEKFRNF----GIDPE-TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ---FPWTSSTYNNVIEAFSDMGD 371 (502)
Q Consensus 300 g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 371 (502)
..+++|-..+.+-... .--++ -..|...|-.|.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 5555554444332110 00111 1234444445555566667766666533321 122455566666665 3455
Q ss_pred HhHHHHHH
Q 010740 372 AKHMEYTF 379 (502)
Q Consensus 372 ~~~a~~~~ 379 (502)
.+++..++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 55554443
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.13 E-value=3.4 Score=40.05 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----CCCHHH
Q 010740 128 LQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP------ELYTALLAAYCR----NSLIDE 197 (502)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~ 197 (502)
.-+|+.+..- +|| .+..++...+=.||-+.+++.+.+..+.+--..+ -.|..++..++. ....+.
T Consensus 177 ~G~f~L~lSl--LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLSL--LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHh--CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 3445555443 233 4555666666666666666666665543211111 123333333332 334666
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTL-IKACVDAMRFELIETLYQDMDERS---VTPNTVTQNIVLGGYGKAGMFDQMERVL 273 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 273 (502)
|.++++.+.+. -|+...|... ...+...|+.++|.+.|+...... .+.....+--+.-.+.-.++|++|.+.|
T Consensus 252 a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 252 AEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 77777776653 3454444322 334455667777777776544311 1122334445555666677777777777
Q ss_pred HHHHHcCCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHH
Q 010740 274 SGMLESATCKPDVWTMNTIL-SVFANKGQV-------DMMERWYEKFR 313 (502)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~a~~~~~~~~ 313 (502)
..+.+.... +...|.-+. .++...|+. ++|.++|.++.
T Consensus 329 ~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 329 LRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 777654322 233333332 223345555 66777776654
No 269
>PRK11906 transcriptional regulator; Provisional
Probab=95.09 E-value=2.5 Score=39.81 Aligned_cols=149 Identities=9% Similarity=0.041 Sum_probs=91.4
Q ss_pred ChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740 159 QPELARKVFNEMVEE-GIEPT-PELYTALLAAYCR---------NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD 227 (502)
Q Consensus 159 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 227 (502)
..+.|+.+|.+.... .+.|+ ...|..+..++.. .....+|.++-++..+.+ +.|......+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 356788889988822 12343 4455544444332 233556777777777754 6677777777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740 228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER 307 (502)
Q Consensus 228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 307 (502)
.++++.+..+|++....+.. ...+|......+.-.|+.++|.+.+++.++-...+.........+..|+..+ .+.+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 77888888888888776432 4455555555666788888888888886554322223333334444554443 455666
Q ss_pred HHHH
Q 010740 308 WYEK 311 (502)
Q Consensus 308 ~~~~ 311 (502)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6543
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.08 E-value=0.09 Score=31.37 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM 467 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 467 (502)
++..+...|...|++++|+++|+++.+.... |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4555666666666666666666666665322 44444443
No 271
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.94 E-value=0.075 Score=29.40 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
..|..+...|.+.|++++|++.++++++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35666777788888888888888888777654
No 272
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.78 E-value=3.5 Score=38.38 Aligned_cols=87 Identities=9% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 010740 97 KLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIE 176 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 176 (502)
+=++..+.+.....+..+++.+...|.+++..++++++..- ++-=..+|..-+..-....++.....+|.+.+...
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-- 106 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-- 106 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--
Confidence 33333333444455677888888999999999999998764 34445577777777777788888888888887663
Q ss_pred CCHHHHHHHHH
Q 010740 177 PTPELYTALLA 187 (502)
Q Consensus 177 ~~~~~~~~l~~ 187 (502)
.+...|...+.
T Consensus 107 l~ldLW~lYl~ 117 (660)
T COG5107 107 LNLDLWMLYLE 117 (660)
T ss_pred ccHhHHHHHHH
Confidence 34555544443
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=3.8 Score=41.33 Aligned_cols=173 Identities=9% Similarity=0.104 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010740 219 STLIKACVDAMRFELIETLYQDMDERSVTPNTVTQN----IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILS 294 (502)
Q Consensus 219 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (502)
..-+..+.+...++.|..+-+ ..+. +..+.. ...+.+.+.|++++|...|-+.+.. +.|. .++.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHH
Confidence 334555555556666555432 2222 222222 2333344566666666666554321 2222 2334
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhH
Q 010740 295 VFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH 374 (502)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 374 (502)
-|.......+...+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 44455555555666666666553 334444556666666666666555544333 1111 1112334444445555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010740 375 MEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR 415 (502)
Q Consensus 375 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (502)
|..+-..... ....... .+-..+++++|++++.
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYIS 514 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHh
Confidence 5444333221 1222222 2234566666666555
No 274
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.73 E-value=2 Score=37.67 Aligned_cols=140 Identities=7% Similarity=0.064 Sum_probs=79.2
Q ss_pred cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-CCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010740 157 SGQPELARKVFNEMVE-EGIEPTPELYTALLAAYCR-NSL-IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL 233 (502)
Q Consensus 157 ~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 233 (502)
...+.+|+++|+..-. ..+--|..+...+++.... .+. ...-.++.+-+....+-.++..+...++..+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345566666663221 2234566666666666655 221 222223333333322235666667777777777777777
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHH----HHcCCCCCCHHHHHHHHHHH
Q 010740 234 IETLYQDMDER-SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM----LESATCKPDVWTMNTILSVF 296 (502)
Q Consensus 234 a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~~ 296 (502)
..++++..... +..-|...|..+|+.....|+..-..++.++- +++.++..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 77777776554 45557777777777777777777666666542 23445555555544444433
No 275
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=5.7 Score=39.59 Aligned_cols=324 Identities=10% Similarity=0.070 Sum_probs=179.3
Q ss_pred HHHhcCChHHHHHHHHHH--------HHcCCCCCHHHHHH-----HHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740 153 LLGKSGQPELARKVFNEM--------VEEGIEPTPELYTA-----LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS 219 (502)
Q Consensus 153 ~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (502)
++.+..++++-..+...+ ...|++.+..-|.. ++.-+...+.+..|+++-..+... ...+...|.
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p--~~~~~~Vl~ 475 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP--ESQGDRVLL 475 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc--cccccHHHH
Confidence 344555666655554443 23477777766654 466777888999999998877542 112256666
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---CCHHHHHHHH
Q 010740 220 TLIKACVDAMR---FELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCK---PDVWTMNTIL 293 (502)
Q Consensus 220 ~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~ 293 (502)
....-+.+..+ -+.+..+-+++... . .+...|..+.+.....|+.+-|..+++.=....... .+..-+...+
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL 553 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLAL 553 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHH
Confidence 67666666532 23333333333332 2 345678888888888999999998876431111000 1222345555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHH--------HHccCcHHHHHHHHH--HHHHcC-
Q 010740 294 SVFANKGQVDMMERWYEKFRNF-----------GIDPETRTFNILIGA--------YGKKRMYDKMSSVME--YMRKLQ- 351 (502)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~--~~~~~~- 351 (502)
.-+...|+.+-...++-.+... ..+.....|..+++- +.+.++-..+...|. ...+..
T Consensus 554 ~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~ 633 (829)
T KOG2280|consen 554 KKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET 633 (829)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh
Confidence 6666777777666665554431 112222233333221 011111111111111 100000
Q ss_pred CCCChHHHHHHHHHHHhcCCHh----------HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 352 FPWTSSTYNNVIEAFSDMGDAK----------HMEYTFEQMH-AEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
+.+-..........+.+..... .-+.+.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+.+
T Consensus 634 ~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-- 711 (829)
T KOG2280|consen 634 IEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-- 711 (829)
T ss_pred hcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence 1111122233334444433311 1122222222 22333344456666777788899999988766543
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
-|+...|-.-+.+++..+++++-+++-+.++. +.=|.-.+.+|.+.|+.++|.+++.+..++
T Consensus 712 --ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 712 --IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred --CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 47888888889999999999998777666552 333555678899999999999988776544
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.40 E-value=6 Score=39.41 Aligned_cols=180 Identities=12% Similarity=0.087 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHh
Q 010740 124 WFQALQVFEMLKEQPFYQPKEGTYMKLLVL-----LGKSGQPELARKVFNEMVE-------EGIEPTPELYTALLAAYCR 191 (502)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 191 (502)
...|.++++...+.| +......+..+ ++...+++.|...|..+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 567888888888876 33333333322 4466789999999998876 44 23355566666666
Q ss_pred CC-----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--cc
Q 010740 192 NS-----LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD-AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG--KA 263 (502)
Q Consensus 192 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~ 263 (502)
.. +.+.|+.++.+..+.+ .|+....-..+.-... ..+...|.++|....+.|.. ....+..++...+ ..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 43 5677888888877653 3554443222222222 24567888888888777654 2222222222222 23
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316 (502)
Q Consensus 264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (502)
.+.+.|..++.+..+.+ .|....-...+..+.. ++++.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 46677777777775542 1221111122222223 55665555555555444
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.34 E-value=1.7 Score=32.91 Aligned_cols=62 Identities=10% Similarity=0.273 Sum_probs=27.5
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 010740 325 NILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM 387 (502)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 387 (502)
...+..+.+.|+.+...+++..+.+ +-.+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3334444455555555555555443 2223445555555555555555555555555555543
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.34 E-value=0.67 Score=40.64 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE-----KHCRPDSETFSIMT 468 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~~~l~ 468 (502)
+..++..+...|+++.+...++...... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444455555555555555544442 34445555555555555555555555554432 35555555554444
Q ss_pred HH
Q 010740 469 EA 470 (502)
Q Consensus 469 ~~ 470 (502)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.93 E-value=7.5 Score=38.76 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=23.1
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC-----ChHHHHHHHHHH
Q 010740 227 DAMRFELIETLYQDMDE-------RSVTPNTVTQNIVLGGYGKAG-----MFDQMERVLSGM 276 (502)
Q Consensus 227 ~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~ 276 (502)
...+.+.|..+|+.+.+ .| .......+..+|.+.. +.+.|..++...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 34556666666666554 33 2223444444454432 344455555555
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.80 E-value=1.9 Score=37.95 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc----CCCCCCCHHHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT----LPNCQPDVYTYS 219 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 219 (502)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .-|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3467778888888888888888888887765 56777888888888888888888888777643 236777777776
Q ss_pred HHHHHH
Q 010740 220 TLIKAC 225 (502)
Q Consensus 220 ~ll~~~ 225 (502)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666663
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.77 E-value=2.9 Score=33.56 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 165 KVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 244 (502)
+.+..+.+.+++|+...+..++..+.+.|++....+++.- ++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3444445556667777777777777777766554444432 23344433333332221 2222333333333222
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFR 313 (502)
Q Consensus 245 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (502)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+|+-..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0012445555666666666666666554111 11222334555555555544444444333
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.69 E-value=11 Score=39.89 Aligned_cols=79 Identities=5% Similarity=-0.008 Sum_probs=39.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 010740 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETR--TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369 (502)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (502)
.+.+|..+|+|.+|+.+..++.. ..+.. +-..|+.-+...+++-+|-++..+.... ..-.+..+++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 34555556666666665554432 11111 1244555555566666666655544432 12233445555
Q ss_pred CCHhHHHHHHHH
Q 010740 370 GDAKHMEYTFEQ 381 (502)
Q Consensus 370 ~~~~~a~~~~~~ 381 (502)
..|++|.++-..
T Consensus 1040 ~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1040 KEWEEALRVASK 1051 (1265)
T ss_pred hHHHHHHHHHHh
Confidence 566666655543
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=3.1 Score=33.30 Aligned_cols=122 Identities=7% Similarity=0.071 Sum_probs=57.4
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH--HHHHHHHhccCCh
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV-TQ--NIVLGGYGKAGMF 266 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~--~~l~~~~~~~g~~ 266 (502)
+.+..++|+.-|..+.+. |...- ....-.......+.|+...|...|+++-.....|-.. -. ..-...+...|.+
T Consensus 70 ~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445556666666666553 22111 1122223334455566666666666655443333221 00 0111224455666
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
+......+.+- ..+-.-....-..|.-+-.+.|++.+|..+|..+..
T Consensus 149 ~dV~srvepLa-~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLA-GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhcc-CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66665555552 222222333344555555566666666666666554
No 284
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.49 E-value=4.3 Score=34.62 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=60.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 010740 295 VFANKGQVDMMERWYEKFRNFGI--DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDA 372 (502)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 372 (502)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 34455555555555555433110 0112222222223444555555555555555442221244555555566666666
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 373 KHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 373 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
+.+...+...... .|+ ...+..+...+...+..+.+...+......
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666553 222 233333344444555667776666666554
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.44 E-value=8 Score=37.55 Aligned_cols=332 Identities=13% Similarity=0.072 Sum_probs=169.9
Q ss_pred cHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHH
Q 010740 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC-RNSLIDEAFVT 201 (502)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 201 (502)
+.+.+...++.+... +|.-..-|......=.+.|..+.+.++|++-+. |++.+...|...+..+. ..|+.+...+.
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 335555555555543 233333556666666677777777777777664 45556666655554433 34666666667
Q ss_pred HHHhhcCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---c------CChHHHHH
Q 010740 202 LNQMKTLPNCQ-PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK---A------GMFDQMER 271 (502)
Q Consensus 202 ~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~------g~~~~a~~ 271 (502)
|+......|.. .....|...+.--...+++.....++++.++. ....|+....-|.+ . ...+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 76666543332 23345666666666667777777777777664 22233322222211 1 11111111
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH-------HHccCcHHHHHH
Q 010740 272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET--RTFNILIGA-------YGKKRMYDKMSS 342 (502)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~-------~~~~g~~~~a~~ 342 (502)
+-....++ ......+...+ .+=..+...+.+.+. ...+.+-.. +-..........
T Consensus 213 l~~~~~~~--------------~~~~~~~~~~e--~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 213 LRSDVAER--------------SKITHSQEPLE--ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred HhhhHHhh--------------hhcccccChhH--HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 11111100 00000111111 111111111111111 111111111 111122222222
Q ss_pred HHHHHHHcC-------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010740 343 VMEYMRKLQ-------FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR 415 (502)
Q Consensus 343 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (502)
.|+.-.+.- ..++..+|...+.--...|+.+.+.-+|++..-- +..=...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 333322221 1124568888888889999999999999887631 11122344445555555699999998888
Q ss_pred HHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Q 010740 416 LASKLQIA--ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE-TFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 416 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~ 482 (502)
...+.-++ |....+.+.+ .-..|+++.|..+++.+.+. + |+.. .-..-+....+.|..+.+..
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 77765433 3333333332 34568999999999999986 3 5544 33334566778888888874
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.07 E-value=0.29 Score=26.99 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
.+|..+...|...|++++|.+.|+++++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566777778888888888888888877665
No 287
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.06 E-value=6.5 Score=35.37 Aligned_cols=133 Identities=11% Similarity=0.158 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--cCC----HHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCc
Q 010740 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFAN--KGQ----VDMMERWYEKFRNFGID---PETRTFNILIGAYGKKRM 336 (502)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~----~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 336 (502)
+++...+++.+. ..|++.+..+|-+....... ..+ ...+..+|+.|.+...- ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 344455666664 34677666666553333322 222 45688888888875422 444555555543 3333
Q ss_pred ----HHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCC--HhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 337 ----YDKMSSVMEYMRKLQFPWTS--STYNNVIEAFSDMGD--AKHMEYTFEQMHAEGMKADTKTFCCLINGY 401 (502)
Q Consensus 337 ----~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 401 (502)
.+.+..+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..+.-..
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35566777777777765332 233333333222222 457788888888888888777766555433
No 288
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.98 E-value=11 Score=38.01 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHc
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ-------PELARKVFNEMVEE 173 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~ 173 (502)
.+--+.+.|++++|.++....... .......+...+..|....+ -+....-|.+..+.
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 555678899999999999555543 34455677777777766532 24556666666544
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.92 E-value=8.2 Score=36.18 Aligned_cols=336 Identities=14% Similarity=0.140 Sum_probs=176.8
Q ss_pred HhhhcHHHHHHHHHHHHhC--CCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHH
Q 010740 119 VLKKQWFQALQVFEMLKEQ--PFYQP-----------KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGI----EPTPEL 181 (502)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~ 181 (502)
-+.+.+++|++.+....++ +.-+| |...=+..+..+...|++.+++.+++++...=+ .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3678999999988766554 21111 111123567788899999999999988876533 367888
Q ss_pred HHHHHHHHHhCC--------C-------HHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 010740 182 YTALLAAYCRNS--------L-------IDEAFVTLNQMKTLP-----NCQPDVYTYSTLIKACVDA--MRFELIETLYQ 239 (502)
Q Consensus 182 ~~~l~~~~~~~g--------~-------~~~a~~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~ 239 (502)
|+.++-.+.+.= . ++-+.-+..+|...+ .+-|-...+..++....-. .+..--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 888665554421 1 112222222222110 1122223333333322211 11222233333
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 240 DMDERSVTPNTV-TQNIVLGGYGKAGMFDQMERVLSGMLESATCK----PDVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 240 ~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
...+.-+.|+-. +...+...+.+ +.+++..+-+.+... .+. .=..+|..++....+.++...|...+.-+..
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~-~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS-KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 333334445433 22333333333 445555544444221 011 1234677777778888888877777766553
Q ss_pred CCCCCCHH---------------------HHHH--------------------HHHH-------HHccCc-HHHHHHHHH
Q 010740 315 FGIDPETR---------------------TFNI--------------------LIGA-------YGKKRM-YDKMSSVME 345 (502)
Q Consensus 315 ~~~~~~~~---------------------~~~~--------------------l~~~-------~~~~g~-~~~a~~~~~ 345 (502)
.. |+.. .++. |+.. +=+.|. -++|+++++
T Consensus 327 ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 21 1111 1111 0110 111232 566666666
Q ss_pred HHHHcCCCCChHHHHHHHH----HHHh---cCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHH--HHHhcCChHHHHH
Q 010740 346 YMRKLQFPWTSSTYNNVIE----AFSD---MGDAKHMEYTFEQMHAEGMKADTK----TFCCLIN--GYANAGLFHKVIS 412 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~--~~~~~g~~~~a~~ 412 (502)
.+.+...- |...-|.+.. +|.+ ...+.+-..+-+-+.+.|+.|-.. .-+.|.. -+...|++.++.-
T Consensus 405 ~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 405 LILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66654222 4433333322 2221 123344444445555667766332 3333333 2446888888877
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740 413 SVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM 467 (502)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 467 (502)
.-..+.+ +.|++.+|..+.-++....++++|..++..+ +|+..++++=
T Consensus 484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 6666665 6789999999999999999999999999765 4677766643
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.83 E-value=0.31 Score=27.49 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888744
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.60 E-value=2.3 Score=34.89 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CC----hH
Q 010740 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT--KTFCCLINGYANAGLFHKVISSVRLASKLQIA---EN----VS 427 (502)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~----~~ 427 (502)
..+..+...|++.|+.+.|.+.|.++.+.-..+.. ..+-.+++.....+++..+...+.++...--. .+ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34556666667777777777777776655433332 24555666666677777766666555443111 11 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
+|..|. +...+++.+|-+.|-...
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 333333 345678888887776554
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=2.3 Score=37.46 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=24.7
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418 (502)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (502)
+.++++.++..-+..|+-||..+++.+|..+.+.+++.+|..+...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555544433
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.27 E-value=2.8 Score=34.40 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 010740 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN--VSFYNAVISACIKADDLMEMERVYKRMKEK---HCRPDSETFSI 466 (502)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~p~~~~~~~ 466 (502)
..+..+...|.+.|+.+.|.+.|..+.+....+. ..++-.++......|++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677889999999999999999999988754443 455677888899999999999998877654 22122222112
Q ss_pred HHH--HHHhcCCcHHHHHHHHHHHH
Q 010740 467 MTE--AYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 467 l~~--~~~~~g~~~~A~~~~~~~~~ 489 (502)
... .+...+++.+|.+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 34567889888888766543
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.08 E-value=2.2 Score=41.13 Aligned_cols=149 Identities=11% Similarity=-0.003 Sum_probs=91.3
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME 270 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 270 (502)
-.|+++.|..++..+.+ ...+.++..+.+.|..++|+++- +|.... .....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccCch--------hhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHH
Confidence 34566666554443332 23445666666777777666542 222221 12345678888887
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
++..+. .+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.
T Consensus 658 ~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 658 DLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 776655 2566788888888888888888888876653 445666667777766666555555555
Q ss_pred CCCCChHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010740 351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381 (502)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (502)
|.. |...-+|...|+++++.+++..
T Consensus 722 g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 443 3333455667788877777654
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.95 E-value=1.7 Score=40.61 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=36.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 010740 402 ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY 481 (502)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 481 (502)
...|+++.+.+.+....+. +.....+...+++...+.|++++|...-+.|....++ +..............|-+|++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3444444444444333221 1222333344444444444444444444444443333 3333322222333344444444
Q ss_pred HHHHHHHHhhhh
Q 010740 482 ALEQEKLQMLLE 493 (502)
Q Consensus 482 ~~~~~~~~~~~~ 493 (502)
-.|++.....++
T Consensus 412 ~~wk~~~~~~~~ 423 (831)
T PRK15180 412 HYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccCCh
Confidence 444444444433
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=2.3 Score=37.54 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010740 245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC--KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR 322 (502)
Q Consensus 245 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 322 (502)
|......+...++..-....+++.++..+-++...... .++. +-.+.++. +..-+.++++.++..=++.|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 44444455555555555566677777777666432110 1111 11112222 23345667777777667777778888
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 323 TFNILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
+++.+++.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888877777776665544
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.82 E-value=5.5 Score=31.64 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=22.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 156 KSGQPELARKVFNEMVEEGIEPTPELY-TALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 156 ~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
+.++.+.+..+++-+.-. .|..... ..-...++..|++.+|+.+|+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555554433 2322221 1222334455555555555555544
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.75 E-value=5.6 Score=31.60 Aligned_cols=94 Identities=16% Similarity=-0.028 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA 187 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (502)
..+..++..-...++.+++..+++.+.-- .|... .-..-...+...|++.+|..+|+.+... .|....-..|+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA 85 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHH
Confidence 55666777778889999999999988774 44433 3333455677999999999999998776 344444455555
Q ss_pred HHHhCCCHHHHHHHHHHhhc
Q 010740 188 AYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~ 207 (502)
.|.....-..-..+-+++.+
T Consensus 86 ~CL~~~~D~~Wr~~A~evle 105 (160)
T PF09613_consen 86 LCLYALGDPSWRRYADEVLE 105 (160)
T ss_pred HHHHHcCChHHHHHHHHHHh
Confidence 55444332333333344444
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.75 E-value=0.26 Score=27.37 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcCCcHHH
Q 010740 461 SETFSIMTEAYAKEGMNDKV 480 (502)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A 480 (502)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444443
No 300
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.72 E-value=13 Score=35.59 Aligned_cols=183 Identities=10% Similarity=0.088 Sum_probs=130.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS 219 (502)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (502)
.+.|.....+++..++......-...+..+|+..| -+-..|..++.+|... .-++-..+++++.+.. --|+..-.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~R 136 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGR 136 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHH
Confidence 35677788899999999999999999999999875 6788899999999988 5577788888888742 33444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010740 220 TLIKACVDAMRFELIETLYQDMDERSVT-----PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILS 294 (502)
Q Consensus 220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (502)
.|...| ..++.+.+..+|......-++ .-...|..+...- ..+.+..+.+...+....|...-.+.+.-+-.
T Consensus 137 eLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 444444 448888888888887765222 1123555555422 35677788888888766666666777777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010740 295 VFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY 331 (502)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 331 (502)
-|....++++|++++.-+.+.+ ..|...-..++..+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 8888999999999998777654 45555554554443
No 301
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=17 Score=37.01 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 431 AVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
-++..+.+..+.+.+..+.+..-+. ++..|..++..+++.+..+.-.+...+.+..
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~ 765 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEA 765 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 4555666667777766666655433 7778888888888888777666666665553
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.66 E-value=0.33 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 466 IMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
.+..++.+.|++++|.+.|++.++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455666666677777777666666554
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.57 E-value=0.5 Score=27.47 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 461 SETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
..+++.|...|...|++++|..++++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3467777778888888888888888877653
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.44 E-value=0.26 Score=27.41 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHH
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELAR 164 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~ 164 (502)
|-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555666666666666655553
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.22 E-value=4.2 Score=29.22 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=18.7
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 414 VRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
+..+....+.|.+.+..+.+++|.+.+++.-|.++|+..+.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333444455555555555555555555555555555544
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.17 E-value=8.1 Score=32.34 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 244 (502)
+.+||-+.--+...|+++.|.+.|+...+.+ +....+...-.-++.-.|++..|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 4555655555566666666666666665532 222222211111222345555555555554443
No 307
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=19 Score=37.53 Aligned_cols=115 Identities=10% Similarity=0.088 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCcH--HHHHHHHHHHHHcCCCCChHHHHH-
Q 010740 288 TMNTILSVFANKGQVDMMERWYEKFRNFG---IDPETRTFNILIGAYGKKRMY--DKMSSVMEYMRKLQFPWTSSTYNN- 361 (502)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~- 361 (502)
-|..|+..|...|+.++|++++.+..... ...-...+..++..+.+.+.. +.++++-+...+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47778888888888888888888776521 111122233344444444443 555555555544433322222222
Q ss_pred -----------HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 362 -----------VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402 (502)
Q Consensus 362 -----------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 402 (502)
.+-.|......+-+..+++.+....-.++....+.++..|+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11123344445555566666655444445555555555554
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=4.3 Score=39.32 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=97.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010740 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS 341 (502)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 341 (502)
-.|+++.|..++..+. ...-+.+...+.+.|-.++|+++- +|..- -.....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHH
Confidence 3455555555443331 223445556666777777766542 22211 122345678888888
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ 421 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (502)
++..+.. +..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 8765543 667799999999999999999999887664 4567777788888776666666666665
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740 422 IAENVSFYNAVISACIKADDLMEMERVYKRM 452 (502)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 452 (502)
..| .-..+|...|+++++.+++..-
T Consensus 723 -~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 -KNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 333 3344566789999988877654
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.04 E-value=1.7 Score=30.79 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 160 PELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
.=++++-++.+...++.|++.+..+.+++|.+.+++..|+++|+-++.. +..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 3345556666666666777777777777777777777777777766532 122334455444
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.60 E-value=3.9 Score=33.58 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740 364 EAFSDMGDAKHMEYTFEQMHAEGMKAD-----TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438 (502)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 438 (502)
.-+...|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3467889999999999888875 2222 2345555667778888888888887777765 2233333333557888
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 010740 439 ADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 439 ~g~~~~a~~~~~~~~~~g 456 (502)
...+++|++-|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888888988888888863
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.55 E-value=16 Score=34.86 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010740 176 EPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI 255 (502)
Q Consensus 176 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 255 (502)
+.|.....+++..+..+....-...+-.+|... ..+...|..++.+|... ..+.-..+++++.+..+. |+..-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 456667778889998888888888898999875 36778899999999988 668888999998887654 5555556
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 010740 256 VLGGYGKAGMFDQMERVLSGMLESATCKP---D---VWTMNTILSVFANKGQVDMMERWYEKFRNF-GIDPETRTFNILI 328 (502)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 328 (502)
|+..|-+ ++...+...|..++.+. -| + ...|.-+... -..+.+..+.+..++... |...-...+..+-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 6666655 88888989998887642 22 1 1234444432 145677777777777653 4444455667777
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 010740 329 GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF 366 (502)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (502)
..|....++++|++++..+.+.+-+ |...-..++..+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8888999999999999988887654 555555555544
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.89 E-value=16 Score=33.83 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP---ETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (502)
...+|..+...+.+.|.++.|...+..+...+... ...+.-.-++..-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777788888888888888888777643111 233444445555666777888877777666
No 313
>PRK09687 putative lyase; Provisional
Probab=89.77 E-value=14 Score=32.96 Aligned_cols=234 Identities=13% Similarity=0.052 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHhhcCCCCCCCHH
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI----DEAFVTLNQMKTLPNCQPDVY 216 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~ 216 (502)
.+|.......+..+...|..+ +...+..+.+ .+|...-...+.++...|+. +++...+..+... .++..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHH
Confidence 346666777777777777543 3333333433 35666667777777777763 4677777766332 36665
Q ss_pred HHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010740 217 TYSTLIKACVDAMRF-----ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT 291 (502)
Q Consensus 217 ~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 291 (502)
.-...+.++...+.. ..+...+..... .++..+-...+.++++.++ ..+...+-.+++ .++...-..
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~ 178 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNW 178 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHH
Confidence 555555555554321 122333322222 2355566666777777775 455666666654 234444444
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 010740 292 ILSVFANKG-QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG 370 (502)
Q Consensus 292 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (502)
.+.++.+.+ +...+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 555555543 23455555555553 44566666677777777763 4444444444432 1 2335566666666
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGY 401 (502)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 401 (502)
+. +|...+..+.+. .||...-...+.+|
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 64 566666666653 34555444444443
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.65 E-value=3.2 Score=29.83 Aligned_cols=60 Identities=5% Similarity=0.116 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740 374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS 434 (502)
Q Consensus 374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 434 (502)
+..+-++.+...++.|++....+.+++|.+.+++..|.++++-++.. +.+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45566666666677788888888888888888888888888776654 2333336666553
No 315
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.63 E-value=25 Score=35.61 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010740 184 ALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA 228 (502)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 228 (502)
.+|--|.++|++++|.++...... ........+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhC
Confidence 345556778888888888755544 2334444556666666554
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.60 E-value=19 Score=34.11 Aligned_cols=125 Identities=9% Similarity=0.029 Sum_probs=88.2
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcH
Q 010740 258 GGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY 337 (502)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 337 (502)
.--...|+...|-+-+...+....-.|+....... .....|+++.+...+..... -+.....+...++....+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhH
Confidence 33445677777666555555554445555544444 45688999999988876654 2345667888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740 338 DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386 (502)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 386 (502)
+.|...-..|....+. ++.........--..|-++++...|+++....
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999998888887776 66665555555566788899999999887653
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.47 E-value=1.1 Score=24.64 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555566666666666666665554
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.42 E-value=3 Score=34.74 Aligned_cols=77 Identities=19% Similarity=0.135 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEG--IEPTPELYTALLA 187 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 187 (502)
++...++.+.+.++.++|+...+.-.+.. +.|...-..+++.++-.|++++|..-++..-... ..+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34456677788899999999887655542 5566778889999999999999988777665431 2344566777776
Q ss_pred H
Q 010740 188 A 188 (502)
Q Consensus 188 ~ 188 (502)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.33 E-value=10 Score=30.59 Aligned_cols=31 Identities=10% Similarity=0.297 Sum_probs=14.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCcHH
Q 010740 308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYD 338 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 338 (502)
+++.+.+.+++++...+..+++.+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3334444444454445555555555544433
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.22 E-value=12 Score=31.36 Aligned_cols=179 Identities=12% Similarity=0.011 Sum_probs=95.5
Q ss_pred hcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740 122 KQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200 (502)
Q Consensus 122 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 200 (502)
|-+.-|.--|...... .|+ +.+||.|.-.+...|+++.|.+.|+...+.+. -...+...-.-++.-.|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai---~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhc---CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhHH
Confidence 4444444444444443 344 56899999999999999999999999998752 223333333334446789999988
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLY-QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES 279 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 279 (502)
-|.+.-+.+.-.|=...|--+. -..-++.+|..-+ ++.... |..-|...|-.|.- |++. .+.+++.+...
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh
Confidence 7777766432222222333222 2234555555433 333332 44444433333221 1111 12333333221
Q ss_pred CCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 280 ATCKPD-------VWTMNTILSVFANKGQVDMMERWYEKFRNF 315 (502)
Q Consensus 280 ~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (502)
. ..+ ..+|--+.+.+...|+.++|..+|+-.+..
T Consensus 226 a--~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 A--TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred c--cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 111 234555666666677777777777665543
No 321
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.22 E-value=28 Score=35.48 Aligned_cols=275 Identities=9% Similarity=0.042 Sum_probs=127.8
Q ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740 90 PIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNE 169 (502)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 169 (502)
...++...+...++.......-...+..+.+.+++++.+.++.. .+.+...-.....+....|+.++|......
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~ 154 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKE 154 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666666444333323333345556677888877773322 244556667777888888888777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHH--HHHHHhhcCCCCCCCHHHHHHHHHHH-----------H-hcCCHHHHH
Q 010740 170 MVEEGIEPTPELYTALLAAYCRNSLIDEAF--VTLNQMKTLPNCQPDVYTYSTLIKAC-----------V-DAMRFELIE 235 (502)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~~~~~~~~~~~~~~~~ll~~~-----------~-~~~~~~~a~ 235 (502)
+-..| ...+..++.++..+.+.|.+.... +-++.+... .+...-..++..+ . -..+...+.
T Consensus 155 lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~----~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~ 229 (644)
T PRK11619 155 LWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKA----GNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVE 229 (644)
T ss_pred HhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHH
Confidence 66555 345666677777776555433321 111111111 1111111111111 0 001111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH--hccCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740 236 TLYQDMDERSVTPNTVTQNIVLGGY--GKAGMFDQMERVLSGMLESATCKPDV--WTMNTILSVFANKGQVDMMERWYEK 311 (502)
Q Consensus 236 ~~~~~~~~~g~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (502)
.++.. +.++...-..++.++ ....+.+.|..++..........+.. ..+..+.......+...++..+++.
T Consensus 230 ~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~ 304 (644)
T PRK11619 230 TFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDD 304 (644)
T ss_pred HHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHh
Confidence 11111 112221111111111 12345577777777664433332221 1223333222232224455555554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010740 312 FRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH 383 (502)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 383 (502)
.... ..+......-+....+.++++.+...+..|....-. ...-.--+.+++...|+.++|...|+.+.
T Consensus 305 ~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 305 VIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3322 123333444444444666776666666665443221 33333345555555677777777776653
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.88 E-value=9.7 Score=29.79 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=25.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHhhcC
Q 010740 156 KSGQPELARKVFNEMVEEGIEPTPE-LYTALLAAYCRNSLIDEAFVTLNQMKTL 208 (502)
Q Consensus 156 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 208 (502)
..++++++..+++.|.-. .|+.. .-..-...++..|++++|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 355566666666655543 23321 1122233445566666666666666553
No 323
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.54 E-value=55 Score=38.04 Aligned_cols=321 Identities=12% Similarity=0.026 Sum_probs=157.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740 149 KLLVLLGKSGQPELARKVFNEM----VEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA 224 (502)
Q Consensus 149 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 224 (502)
.+..+-.+++.+.+|...++.- .+. .-....|..+...|+..+++|....+...-.. .|+ ...-+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHH
Confidence 3445566778888888888873 221 11233444455588888888887777664222 122 2234445
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHhcCCHH
Q 010740 225 CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT-ILSVFANKGQVD 303 (502)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~ 303 (502)
....|++..|...|+.+.+.+.. ...+++.++......|.++.+.-..+..... ..+....++. =+.+--+.+++|
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchh
Confidence 56678888899999888876432 3667777777777777777777665555332 1222222322 233445666777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH--HHHHHHcc--CcHHHHHHHHHHHHHcCC--------C-CChHHHHHHHHHHHhcC
Q 010740 304 MMERWYEKFRNFGIDPETRTFNI--LIGAYGKK--RMYDKMSSVMEYMRKLQF--------P-WTSSTYNNVIEAFSDMG 370 (502)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~--g~~~~a~~~~~~~~~~~~--------~-~~~~~~~~l~~~~~~~~ 370 (502)
....... .. +..+|.. +.....+. .+.-.-.+..+.+.+.-+ . .-...|..++....-..
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 6665554 11 1112211 22222221 111111122222222211 1 01133444443332211
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHhcCCCC-----ChHHHHHHHHHHHHcCCHHH
Q 010740 371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV-RLASKLQIAE-----NVSFYNAVISACIKADDLME 444 (502)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 444 (502)
--.....+.+.-......-+..-|-.-+.--....+..+-+--+ +.+......+ -..+|-...+...+.|.++.
T Consensus 1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 11111111100000001111111211221111111111111111 1122221121 24567788888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 445 MERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 445 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
|...+-...+.+ -+..+--....+.+.|+...|+.++++.+...
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 988777666654 23445556777889999999999999988654
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.10 E-value=1.5 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 427 SFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887764
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.57 E-value=8.2 Score=32.01 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=60.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHhcCCHH
Q 010740 155 GKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP--NCQPDVYTYSTLIKACVDAMRFE 232 (502)
Q Consensus 155 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~ 232 (502)
.+.| -+.|++.|-.+...+.--++.....|...|. ..+.++++.++.+..+.. +-.+|+..+..|+..+.+.++++
T Consensus 118 sr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFG-DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3444 4678888989988876666666666666555 678899999998876542 23678999999999999999999
Q ss_pred HHH
Q 010740 233 LIE 235 (502)
Q Consensus 233 ~a~ 235 (502)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.17 E-value=2.1 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010740 147 YMKLLVLLGKSGQPELARKVFNEMVE 172 (502)
Q Consensus 147 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 172 (502)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.83 E-value=12 Score=31.03 Aligned_cols=78 Identities=17% Similarity=-0.009 Sum_probs=58.2
Q ss_pred HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCh
Q 010740 190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER---SVTPNTVTQNIVLGGYGKAGMF 266 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~ 266 (502)
.+.|+ ++|.+.|-.+...+ .--++.....|...| ...+.+++.+++....+. +-.+|...+..|+..|.+.|++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTP-ELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34454 78888888888763 334555555555544 477899999999887753 3467899999999999999999
Q ss_pred HHHH
Q 010740 267 DQME 270 (502)
Q Consensus 267 ~~a~ 270 (502)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9874
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.57 E-value=0.2 Score=39.46 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC
Q 010740 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440 (502)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 440 (502)
.++..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 34555666677777777777777665555666777777777777666666666551 11122235566666777
Q ss_pred CHHHHHHHHHHHH
Q 010740 441 DLMEMERVYKRMK 453 (502)
Q Consensus 441 ~~~~a~~~~~~~~ 453 (502)
.++++..++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777766666543
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.46 E-value=8.7 Score=33.72 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 205 (502)
+++.....|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--.|..-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45556677888888888888888888775 667788888888888888866666555554
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.06 E-value=18 Score=30.44 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCChHHHHHHHHHHH
Q 010740 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ--IAENVSFYNAVISACI 437 (502)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 437 (502)
+..++.+.+.+.+.+++...++-++.+ +.|..+-..+++.++-.|++++|..-++..-... ..+....|..+|.+-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea 83 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA 83 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 444566677778888888777766652 2344556677888888888888887776655532 2334555666554421
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHH-HHHHH--HhcCCcHHHHHHHHHHHHhhhhcccccc
Q 010740 438 KADDLMEMERVYKRMKEKHCRP-DSETFSI-MTEAY--AKEGMNDKVYALEQEKLQMLLEASGHWQ 499 (502)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~-l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (502)
.. .++|.-=..-|+.- ....|.. +..+. ...|.-+.+..+-+.+++..+...|+|.
T Consensus 84 ~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~ 143 (273)
T COG4455 84 AR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHAD 143 (273)
T ss_pred HH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccC
Confidence 11 11222111112211 2233443 33333 2334555677777888888888888865
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.96 E-value=10 Score=27.01 Aligned_cols=45 Identities=4% Similarity=0.110 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418 (502)
Q Consensus 374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (502)
++.+-++.+...++.|++....+.+++|.+.+++..|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444333
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.84 E-value=15 Score=28.77 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEG 174 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 174 (502)
..+..++..-...++.+++..+++.+.-- .|+.. .-..-...+...|++++|..+|+++.+.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 45556666666789999999999988764 44433 22333455678999999999999998764
No 333
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.47 E-value=24 Score=30.71 Aligned_cols=203 Identities=15% Similarity=0.143 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHc---C-CC
Q 010740 211 CQPDVYTYSTLIKA-CVDAMRFELIETLYQDMDERSVTPNTV---TQNIVLGGYGKAGMFDQMERVLSGMLES---A-TC 282 (502)
Q Consensus 211 ~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~ 282 (502)
..||+..=|..-.. -.+..++++|+.-|++..+....-... ....++..+.+.|++++..+.+.+++.- . .-
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 35555443332221 123457788888888877653332333 3344677788888888888888777531 0 00
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC---
Q 010740 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNF-----GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW--- 354 (502)
Q Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 354 (502)
.-+..+.|.++.......+.+-...+|+.-.+. +-+.--.|-..|...|...|.+.+..++++++....-.-
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 123445666666666666666666665543321 111112233556667777777777777777775432110
Q ss_pred --------ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----HhcCChHHHHHHH
Q 010740 355 --------TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG-MKADTKTFCCLINGY-----ANAGLFHKVISSV 414 (502)
Q Consensus 355 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~ 414 (502)
-...|..-|..|....+-.....+|++..... --|.+... .+|+-| .+.|.+++|..-|
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHH
Confidence 12456666777777777777777777665332 23333332 333333 3456676665433
No 334
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=85.40 E-value=26 Score=31.11 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHcCCHHH
Q 010740 428 FYNAVISACIKADDLME 444 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~ 444 (502)
.|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45556666666665443
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.30 E-value=49 Score=34.22 Aligned_cols=271 Identities=13% Similarity=-0.003 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhC----CC---------CCCCHHHHH----HHH--HHHHhcCChHHHHHHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQ----PF---------YQPKEGTYM----KLL--VLLGKSGQPELARKVFNEMV 171 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~~~~~----~l~--~~~~~~g~~~~a~~~~~~~~ 171 (502)
...+|......|+++.|..+++....+ +. .-|+....+ .++ -......++++|..+++++.
T Consensus 363 ~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~ 442 (894)
T COG2909 363 PSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLE 442 (894)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 344566666778888887777654111 10 011111111 122 23345677888888877766
Q ss_pred HcCCCCCH-------HHHHHHH-HHHHhCCCHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740 172 EEGIEPTP-------ELYTALL-AAYCRNSLIDEAFVTLNQMKTL---PNCQPDVYTYSTLIKACVDAMRFELIETLYQD 240 (502)
Q Consensus 172 ~~~~~~~~-------~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 240 (502)
..--.|+. ..++.+- ......|++++|.++.+..... ....+....+..+..+..-.|++++|..+.++
T Consensus 443 ~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~ 522 (894)
T COG2909 443 HFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQ 522 (894)
T ss_pred HHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHH
Confidence 54212221 1223222 2233467777777777665442 11233455566677777778888888877776
Q ss_pred HHhCCCCCCHHHHHHHH-----HHHhccCC--hHHHHHHHHHHHHcCCC-C----CCHHHHHHHHHHHHhc-CCHHHHHH
Q 010740 241 MDERSVTPNTVTQNIVL-----GGYGKAGM--FDQMERVLSGMLESATC-K----PDVWTMNTILSVFANK-GQVDMMER 307 (502)
Q Consensus 241 ~~~~g~~~~~~~~~~l~-----~~~~~~g~--~~~a~~~~~~~~~~~~~-~----~~~~~~~~l~~~~~~~-g~~~~a~~ 307 (502)
..+..-.-+...+..+. ..+...|+ +.+.+..|......... + +-...+..++.++.+. +...++..
T Consensus 523 a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~ 602 (894)
T COG2909 523 AEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARL 602 (894)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhh
Confidence 65532222333332222 22444553 22333333333221100 1 1223344444444441 11122222
Q ss_pred HHHHHHhCCCCCCHHHH--HHHHHHHHccCcHHHHHHHHHHHHHcCCCCC----hHHHHHHHH--HHHhcCCHhHHHHHH
Q 010740 308 WYEKFRNFGIDPETRTF--NILIGAYGKKRMYDKMSSVMEYMRKLQFPWT----SSTYNNVIE--AFSDMGDAKHMEYTF 379 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~--~~~~~~~~~~a~~~~ 379 (502)
.++.-......+-...+ ..|+..+...|+.++|...++++......++ -..-...+. .....|+.+.+....
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 603 GIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWL 682 (894)
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence 22222221111212222 3566777778888888888777766544332 111122222 233456666665554
Q ss_pred HH
Q 010740 380 EQ 381 (502)
Q Consensus 380 ~~ 381 (502)
.+
T Consensus 683 ~~ 684 (894)
T COG2909 683 LK 684 (894)
T ss_pred Hh
Confidence 44
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.24 E-value=26 Score=30.96 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
+++.....|..+|.+.+|.++.+.....+ +.+...+..|+..+...||--+|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455667778888888888888777765 6677777788888888888777777776664
No 337
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.92 E-value=27 Score=30.90 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCChHHHHH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD-AM-RFELIETLYQDMDE-RSVTPNTVTQNIVLGGYGKAGMFDQMER 271 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (502)
+.+|+.+|+.......+-.|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 445555555322111234455555555555444 11 12222222232222 2344555556666666666666666666
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010740 272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY 309 (502)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 309 (502)
+++......+...|...|..+|....+.|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 66655443334445566666666666666655444444
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.53 E-value=21 Score=29.41 Aligned_cols=87 Identities=8% Similarity=0.077 Sum_probs=42.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740 294 SVFANKGQVDMMERWYEKFRNFGIDPETRTFN-----ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368 (502)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (502)
..+...+++++|...++..... +....+. .|.......|.+|+|+..++.....+. .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 4455666666666666655431 1111222 223334455666666666655544322 12222333445556
Q ss_pred cCCHhHHHHHHHHHHHc
Q 010740 369 MGDAKHMEYTFEQMHAE 385 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~~ 385 (502)
.|+-++|..-|+...+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 66666666666665554
No 339
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=84.51 E-value=36 Score=35.00 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=17.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 010740 149 KLLVLLGKSGQPELARKVFNEMVE 172 (502)
Q Consensus 149 ~l~~~~~~~g~~~~a~~~~~~~~~ 172 (502)
.++..+.++|+.+.|.+...+...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 456667778888888887777654
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.43 E-value=3.9 Score=22.22 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788888888888888887765
No 341
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.41 E-value=31 Score=30.36 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 466 IMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.++..+.+.|++.+|+.+..-.+..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4566778888888888877766554
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.30 E-value=2.4 Score=22.78 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=8.2
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 010740 152 VLLGKSGQPELARKVFNEMV 171 (502)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~~~ 171 (502)
.++.+.|++++|.+.|++++
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 33333444444444444443
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.51 E-value=1.8 Score=22.17 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=8.9
Q ss_pred HHHHHHHhcCCcHHHHHHH
Q 010740 466 IMTEAYAKEGMNDKVYALE 484 (502)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~ 484 (502)
.+...+...|+.++|.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3344444455555544444
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.49 E-value=32 Score=29.93 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=27.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 010740 157 SGQPELARKVFNEMVEEGIEPT---PELYTALLAAYCRNSLIDEAFVTLNQMK 206 (502)
Q Consensus 157 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 206 (502)
..++++|+.-|++.++..-... -.+...++..+.+.|++++..+.|.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3456666666666665421222 2233445666666666666666666653
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.17 E-value=2.3 Score=22.16 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 464 FSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
|..+...+...|++++|...+++.++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 344445555555555555555555443
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.09 E-value=11 Score=33.91 Aligned_cols=95 Identities=9% Similarity=-0.051 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
+.+-...|.+.|.|++|+++|....... +.+..++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 3444556788999999999999877652 5588899999999999999998888777766542 122334444444444
Q ss_pred hCCCHHHHHHHHHHhhcC
Q 010740 191 RNSLIDEAFVTLNQMKTL 208 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~ 208 (502)
..|...+|.+-++...+.
T Consensus 177 ~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHhhHHHHHHhHHHHHhh
Confidence 556667777777666654
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.52 E-value=4.9 Score=35.97 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=59.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740 363 IEAFSDMGDAKHMEYTFEQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441 (502)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 441 (502)
..-|.++|.+++|+.+|...... .| +.+++..-..+|.+...+..|..-...+...+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45678889999999999877664 45 77888888888888888888877666665543 1112223333333333455
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 010740 442 LMEMERVYKRMKEKHCRPD 460 (502)
Q Consensus 442 ~~~a~~~~~~~~~~g~~p~ 460 (502)
..+|.+-++...+ +.|+
T Consensus 181 ~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHhHHHHHh--hCcc
Confidence 5555555555555 3454
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.39 E-value=0.68 Score=36.46 Aligned_cols=130 Identities=10% Similarity=0.081 Sum_probs=86.0
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010740 326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG 405 (502)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 405 (502)
.++..+.+.+..+....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777788889999999999998776668899999999999998888888888721 1123345677777888
Q ss_pred ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 010740 406 LFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMN 477 (502)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 477 (502)
.++++.-++..+.... ..+..+...++++.|.+++.+. ++...|..++..|...+..
T Consensus 85 l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCcc
Confidence 7777777666433221 1111123345555555333222 3678888888888776653
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.12 E-value=2.6 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=12.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHH
Q 010740 467 MTEAYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~ 489 (502)
|..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 350
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.03 E-value=41 Score=29.58 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=54.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh---
Q 010740 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD--- 368 (502)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 368 (502)
=|+++...+++.+++.+.-+--+.--+....+...-|-.|.+.++...+.++-.......-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35677777777777766544433222233445555566677778877777777766655433344557666666544
Q ss_pred --cCCHhHHHHHH
Q 010740 369 --MGDAKHMEYTF 379 (502)
Q Consensus 369 --~~~~~~a~~~~ 379 (502)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 57777777766
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.98 E-value=4.9 Score=23.89 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=14.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 432 VISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 432 l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666665543
No 352
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.81 E-value=60 Score=31.26 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHH
Q 010740 125 FQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR-NSLIDEAFVTLN 203 (502)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~ 203 (502)
.+...+|+.+..+ +..|...|...+..+-+.+.+.+...+|..|.... +.++..|-....-... .-.++.|..+|.
T Consensus 88 ~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 4556677777665 56799999999999999999999999999998763 4445555443333333 334888888888
Q ss_pred HhhcC
Q 010740 204 QMKTL 208 (502)
Q Consensus 204 ~~~~~ 208 (502)
+-.+.
T Consensus 165 rgLR~ 169 (568)
T KOG2396|consen 165 RGLRF 169 (568)
T ss_pred HHhhc
Confidence 87765
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.75 E-value=8.8 Score=26.18 Aligned_cols=54 Identities=13% Similarity=-0.065 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARK 165 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 165 (502)
+...++.| ..++.++|+..|..+.+.-.-+++.. ++..++.+|+..|+++++++
T Consensus 10 ie~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 10 IEKGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433 55666777777766655432222222 45556666666666665544
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.32 E-value=1.4e+02 Score=35.15 Aligned_cols=353 Identities=13% Similarity=0.099 Sum_probs=178.6
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQ-PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI 195 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 195 (502)
+..+.+.|.+|+..++.-.....-. -....|-.+...|+.-+++|...-+...-. -+...+. -|......|++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEASGNW 1465 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHhhccH
Confidence 4556788999999998742111001 112234445559999999999888777521 1222333 33445678999
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCChHHHHHHHH
Q 010740 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI-VLGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~ 274 (502)
+.|...|+++.+.+ ++....++.++......+.++...-..+-...+ ..+....++. =+.+-.+.++++...+.+.
T Consensus 1466 ~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999998753 344677888888877788888777755554443 2223333333 2344467777777666654
Q ss_pred HHHHcCCCCCCHHHHHHH--HHHHHhc--CCHHHHHHHHHHHHhCCCC--------C-CHHHHHHHHHHHHccCcHHHHH
Q 010740 275 GMLESATCKPDVWTMNTI--LSVFANK--GQVDMMERWYEKFRNFGID--------P-ETRTFNILIGAYGKKRMYDKMS 341 (502)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l--~~~~~~~--g~~~~a~~~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~g~~~~a~ 341 (502)
.. +..+|... .....+. .|.-.-.+..+-+.+.-+. - =...|..++....-.. ..
T Consensus 1543 ---~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~ 1610 (2382)
T KOG0890|consen 1543 ---DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LE 1610 (2382)
T ss_pred ---cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HH
Confidence 11 22222222 2222222 1211111222222221100 0 0122333333222111 11
Q ss_pred HHHHHHHHc----CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH-HHc----CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 010740 342 SVMEYMRKL----QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQM-HAE----GMKA-DTKTFCCLINGYANAGLFHKVI 411 (502)
Q Consensus 342 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m-~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~ 411 (502)
...+..... ...-+...|..-+..-....+..+-+-.+++. ... +.+- -..+|-...+.....|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111 01112222322322211112222221112111 111 1111 2357777888888899999998
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHH---------HHhc
Q 010740 412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD--------SETFSIMTEA---------YAKE 474 (502)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~--------~~~~~~l~~~---------~~~~ 474 (502)
..+-.+.+.+ .| ..+-.....+...|+...|+.++++..+... |+ +..-+.++.. ....
T Consensus 1691 nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~-~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es 1766 (2382)
T KOG0890|consen 1691 NALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNF-PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEES 1766 (2382)
T ss_pred HHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc-ccccCCccccchhhhhhhhhhHHHHHHHHHHHh
Confidence 8776666654 33 3455667778889999999999988875522 22 2222222221 2233
Q ss_pred CC--cHHHHHHHHHHHHhhhhc
Q 010740 475 GM--NDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 475 g~--~~~A~~~~~~~~~~~~~~ 494 (502)
|+ .+..++.++++.+..++.
T Consensus 1767 ~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1767 GNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred cchhHHHHHHHHHHHHHHcccc
Confidence 43 345677777777776643
No 355
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.25 E-value=74 Score=32.03 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=14.3
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010740 355 TSSTYNNVIEAFSDMGDAKHMEYTFEQM 382 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m 382 (502)
+......++..|.+.|-.+.|.++.+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444455555555555555555555544
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.23 E-value=80 Score=33.25 Aligned_cols=117 Identities=10% Similarity=0.142 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 010740 252 TQNIVLGGYGKAGMFDQMERVLSGMLESAT-CKP-DVWTMNTILSVFANKGQV--DMMERWYEKFRNFGIDPETRTFN-- 325 (502)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~-- 325 (502)
-|..|+..|...|+.++|+++|.+...... ..+ -...+..++.-..+.+.. +-++++-+......-......+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 478899999999999999999999865321 111 112233355555555544 44444444444322111111111
Q ss_pred ----------HHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740 326 ----------ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368 (502)
Q Consensus 326 ----------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (502)
.-+-.|......+.+..+++.+....-..+....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223345566777888888888877766677888888877764
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.21 E-value=22 Score=29.00 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH---HHhcCC-------hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC
Q 010740 124 WFQALQVFEMLKEQPFYQPKEGTYMKLLVL---LGKSGQ-------PELARKVFNEMVEEGIEPT-PELYTALLAAYCRN 192 (502)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 192 (502)
|+.|.+.++.....+ +.|...++.-..+ +++..+ +++|..-|++.+.. .|+ ..++..+..+|...
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 445555555544332 4555554443333 333333 33444444444444 344 46666666666543
Q ss_pred CC-----------HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740 193 SL-----------IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245 (502)
Q Consensus 193 g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 245 (502)
+. +++|.+.|++.... .|+...|+.-+.... +|-+++.++.+.+
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 32 45566666666543 577777777766653 3455555555543
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.41 E-value=18 Score=27.24 Aligned_cols=44 Identities=5% Similarity=0.092 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 375 MEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418 (502)
Q Consensus 375 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (502)
..+-++.+...++.|++.....-+++|.+.+++..|..+++-++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555555444443
No 359
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.92 E-value=39 Score=28.10 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK-----EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYT 183 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 183 (502)
+.+..-...+...|++++|..-|..+... .++. ...|..-..++.+.+.++.|..-..+.++.+ +-......
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~ 172 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALE 172 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHH
Confidence 44555555677889999999988888775 2332 2245555677788888888888888887765 22334444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhcC
Q 010740 184 ALLAAYCRNSLIDEAFVTLNQMKTL 208 (502)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~ 208 (502)
.-..+|.+...+++|++-|.++.+.
T Consensus 173 RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4456777888888888888888774
No 360
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.53 E-value=17 Score=27.42 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 163 ARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
..+.+..+...++.|++.+....+++|.+.+++..|+.+|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444555555666666666666666666666666666666654
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.84 E-value=18 Score=25.85 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=10.1
Q ss_pred HHHhcCCcHHHHHHHHHHHHh
Q 010740 470 AYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.....|++++|++.++++++.
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 334445555555555554444
No 362
>PRK09687 putative lyase; Provisional
Probab=76.81 E-value=56 Score=29.27 Aligned_cols=137 Identities=15% Similarity=0.028 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG-DAKHMEYTFEQMHAEGMKADTKTFCCLI 398 (502)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 398 (502)
+..+-...+.++.+.++ ..+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3344444444432 23333333444444432 13345555555443 34555555566
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740 399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472 (502)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 472 (502)
.++.+.|+ ..+...+-...+.+ + .....+.++...|+. +|...+..+.+. .||..+-...+.+|.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 66666665 34444444444332 1 223556666666664 566666666653 235555554454443
No 363
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.76 E-value=13 Score=30.99 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 458 RPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
.|++.+|..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555555555555555555544
No 364
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.58 E-value=21 Score=31.28 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEE----G-IEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 205 (502)
..-.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+--++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3345566666777777777777665422 2 1234455566666666677766666554443
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.51 E-value=40 Score=27.51 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
+++|...|++..+. .|+..+|+.-+.... +|-+++.++.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 34455555555543 677777776666542 345555555444
No 366
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.82 E-value=54 Score=28.12 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=16.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC
Q 010740 399 NGYANAGLFHKVISSVRLASKLQIAEN 425 (502)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (502)
..-+..+++.+|+++|+++....+..+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 333456667777777776666544433
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.71 E-value=29 Score=25.03 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=25.4
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740 259 GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316 (502)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (502)
.+...|+|++|..+.+.+ ..||...|-++.. .+.|..+++...+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345555666655554433 2455555554433 24455555555555555444
No 368
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.56 E-value=1.1e+02 Score=31.79 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=121.3
Q ss_pred HHHHhCCCHHHHHHHHHHhhcCCC---CCCCH---HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHH
Q 010740 187 AAYCRNSLIDEAFVTLNQMKTLPN---CQPDV---YTYSTLIK-ACVDAMRFELIETLYQDMDER----SVTPNTVTQNI 255 (502)
Q Consensus 187 ~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~---~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~ 255 (502)
......+++++|..++.++...-+ ..+.. ..|+.|-. .....|+++.|+++-+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 344567889999998888765311 11111 13443332 234578889998888776653 23345566677
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHH-----HHHHHhcCC--HHHHHHHHHHHHhC---CCC---CCHH
Q 010740 256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTI-----LSVFANKGQ--VDMMERWYEKFRNF---GID---PETR 322 (502)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~--~~~a~~~~~~~~~~---~~~---~~~~ 322 (502)
+..+..-.|++++|..+..+..+.. -.-+...+... ...+...|+ +.+.+..|...... ..+ +-..
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a-~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMA-RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 7778888999999998887764431 12233333222 233555663 23333333333221 111 1223
Q ss_pred HHHHHHHHHHccCcHHHHHHH----HHHHHHcCCCCChH--HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC----CHH
Q 010740 323 TFNILIGAYGKKRMYDKMSSV----MEYMRKLQFPWTSS--TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA----DTK 392 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~ 392 (502)
++..++.++.+ ++.+..- +..-......+-.. .+..|+......|+.++|...+.++......+ +..
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 44445555544 3332222 22112221221112 22367778888999999999999887654333 222
Q ss_pred HHHHHHH--HHHhcCChHHHHHHHHH
Q 010740 393 TFCCLIN--GYANAGLFHKVISSVRL 416 (502)
Q Consensus 393 ~~~~l~~--~~~~~g~~~~a~~~~~~ 416 (502)
+-...+. .....|+.+.+.....+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222 23467888877776654
No 369
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.21 E-value=66 Score=28.89 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=40.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 010740 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK---- 333 (502)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 333 (502)
..+++..+.+.+...... -+......+...|.. ..+..+|.++|....+.|.. .....|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~----~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL----GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhc----CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 455666777777666431 122333333333332 23456666666655554422 222223333333
Q ss_pred cCcHHHHHHHHHHHHHcCCC
Q 010740 334 KRMYDKMSSVMEYMRKLQFP 353 (502)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~ 353 (502)
..+..+|...+...-+.|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ccCHHHHHHHHHHHHHcCCh
Confidence 22555566666655555544
No 370
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.34 E-value=9.7 Score=24.70 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 442 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
+++..++++.++.. +-|..-.-.+|.+|...|++++|.++++++.+..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44455555555432 1144444456777778888888877777776653
No 371
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.97 E-value=11 Score=23.50 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010740 431 AVISACIKADDLMEMERVYKRMKEKHCRPDSETFS 465 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 465 (502)
.+.-++.+.|++++|.+..+.+.+. .|+..-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHH
Confidence 3445566667777777777666663 45544433
No 372
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.77 E-value=18 Score=21.94 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=22.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE 469 (502)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 469 (502)
..+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777766666665543
No 373
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.68 E-value=1.3e+02 Score=31.45 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKE--GTYMKLLVLLGKSGQPELARKVFNEMV 171 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 171 (502)
+-+.|...|+|++|+++-+. .|+. .++..-.+.|.+.+++..|-++|.++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~-------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART-------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccC-------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 44567777888888776543 2332 244445566777777888888777763
No 374
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.60 E-value=94 Score=29.93 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=60.6
Q ss_pred HHccCcHHHHHHHHHHHHH---cCCCC-----ChHHHHHHHHHHHhcCCHhHHHHHHHHHHH-------cCCCCCH----
Q 010740 331 YGKKRMYDKMSSVMEYMRK---LQFPW-----TSSTYNNVIEAFSDMGDAKHMEYTFEQMHA-------EGMKADT---- 391 (502)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~---~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~---- 391 (502)
+.-.|++.+|.+++...-- .|... ....||.+...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3445777777776654321 12111 122345565556666666666666665553 3433321
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740 392 ------KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK 438 (502)
Q Consensus 392 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 438 (502)
.......-.|...|++-.|.+.|...... +..++..|-.|..+|..
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 12223444566777777777777766654 45677777777777754
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.85 E-value=25 Score=24.10 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=25.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHH
Q 010740 438 KADDLMEMERVYKRMKEKHCRPD--SETFSIMTEAYAKEGMNDKVYALEQ 485 (502)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (502)
...+.++|+..+....++-..+. -.++..++.+|+..|++.+++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655432221 1244555666666666666655543
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.86 E-value=1.3e+02 Score=30.73 Aligned_cols=366 Identities=13% Similarity=0.119 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhCCCHH
Q 010740 125 FQALQVFEMLKEQPFYQPKEG--TYMKLLVLLG-KSGQPELARKVFNEMVEEGIEPTPE-----LYTALLAAYCRNSLID 196 (502)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~ 196 (502)
..|+++++.+.+....+|..+ ++-.+...+. ...+++.|+..+++.....-.++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 357778887775443445433 5566777776 6788999999999876543233221 2345567777777655
Q ss_pred HHHHHHHHhhcCC-CCCCC--HHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHH--hccCChH
Q 010740 197 EAFVTLNQMKTLP-NCQPD--VYTYSTL-IKACVDAMRFELIETLYQDMDERS---VTPNTVTQNIVLGGY--GKAGMFD 267 (502)
Q Consensus 197 ~a~~~~~~~~~~~-~~~~~--~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~--~~~g~~~ 267 (502)
|...+++..+.- +.... ...|..+ +..+...+++..|.+.++.+...- ..|-..++-.++.+. .+.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888765431 11112 2233333 223333479999999998876532 223334444444443 3456667
Q ss_pred HHHHHHHHHHHcC--------CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh-------CC----------CC--
Q 010740 268 QMERVLSGMLESA--------TCKPDVWTMNTILSVFA--NKGQVDMMERWYEKFRN-------FG----------ID-- 318 (502)
Q Consensus 268 ~a~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~-------~~----------~~-- 318 (502)
++.+.++.+.... ...|...+|..+++.++ ..|+++.+...++++.+ .. ++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 7777777663211 11345566777776654 56776666666555532 10 00
Q ss_pred -----------CCHHH---------HHHHHHH--HHccCcHHHHHHHHH-------HHH-HcCCCCC--------hHHHH
Q 010740 319 -----------PETRT---------FNILIGA--YGKKRMYDKMSSVME-------YMR-KLQFPWT--------SSTYN 360 (502)
Q Consensus 319 -----------~~~~~---------~~~l~~~--~~~~g~~~~a~~~~~-------~~~-~~~~~~~--------~~~~~ 360 (502)
+.... +..++.+ ++..+..+++.++++ ... .....+. ...|.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 00111 1111111 222344435544444 444 1111111 11222
Q ss_pred HHHH---------HHHhcCCHhHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHhcCChHHHHHHHH--------
Q 010740 361 NVIE---------AFSDMGDAKHMEYTFEQMHAEGM-KAD-------TKTFCCLINGYANAGLFHKVISSVR-------- 415 (502)
Q Consensus 361 ~l~~---------~~~~~~~~~~a~~~~~~m~~~~~-~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~-------- 415 (502)
..+. ..+-.+++..|...++.|.+..- .|+ ...+....-.+-..|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 2222 22346889999999998875421 121 2233333344556799999999997
Q ss_pred HHHhcCCCCChHHHHHH--HHHHHHcC--CHHH--HHHHHHHHHHC---CCCCCHHHHHHHH-HHHHhcC--CcHHHHHH
Q 010740 416 LASKLQIAENVSFYNAV--ISACIKAD--DLME--MERVYKRMKEK---HCRPDSETFSIMT-EAYAKEG--MNDKVYAL 483 (502)
Q Consensus 416 ~~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--a~~~~~~~~~~---g~~p~~~~~~~l~-~~~~~~g--~~~~A~~~ 483 (502)
.....+...+..++..| +..+...+ ...+ +.++++.+... ....+..++..++ .++.... ...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 44444544454444332 22222222 2223 66677666542 1122344555444 3333222 23477777
Q ss_pred HHHHHHhh
Q 010740 484 EQEKLQML 491 (502)
Q Consensus 484 ~~~~~~~~ 491 (502)
+.+.++..
T Consensus 517 l~~~L~~~ 524 (608)
T PF10345_consen 517 LQEALKMA 524 (608)
T ss_pred HHHHHHHH
Confidence 76666654
No 377
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.24 E-value=71 Score=27.53 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=72.5
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCh
Q 010740 330 AYGKKRMYDKMSSVMEYMRKLQFPWTS-STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT-FCCLINGYANAGLF 407 (502)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~ 407 (502)
.|....+++.|..-+.+.+.. .|+. .-|+.-+.++.+..+++.+.+--.+.++ +.|+..- ...+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 455566788888866666554 3444 4556667777778888877766666555 3566543 33455566677788
Q ss_pred HHHHHHHHHHHhc----CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740 408 HKVISSVRLASKL----QIAENVSFYNAVISACIKADDLMEMERVYKRM 452 (502)
Q Consensus 408 ~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 452 (502)
++|+..+.+..+. .+++...+...|..+=-+.=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888776433 34445556666665543333444445544444
No 378
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.76 E-value=56 Score=27.82 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 466 IMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.+.....+.|+.++|.+.|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444445555555555555555543
No 379
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.24 E-value=54 Score=25.76 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=39.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCC-----CCChHHHHHHHHHHHhcCC-HhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740 325 NILIGAYGKKRMYDKMSSVMEYMRKLQF-----PWTSSTYNNVIEAFSDMGD-AKHMEYTFEQMHAEGMKADTKTFCCLI 398 (502)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~ 398 (502)
+.++......+.+.....+++.+..... ..+...|.+++.+..+..- --.+..+|.-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444445555555555554422110 1244455566655544433 334455566666555566666666666
Q ss_pred HHHHh
Q 010740 399 NGYAN 403 (502)
Q Consensus 399 ~~~~~ 403 (502)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 65544
No 380
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.17 E-value=60 Score=27.93 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=10.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHh
Q 010740 185 LLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~ 205 (502)
++.++...|+.+.|+.+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555443
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.00 E-value=86 Score=29.60 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHH--hcCCHhHHHHHHHHHHH
Q 010740 331 YGKKRMYDKMSSVMEYMRKLQFPWTSS--TYNNVIEAFS--DMGDAKHMEYTFEQMHA 384 (502)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 384 (502)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34567777777777777665 433333 3333434433 24456666666666554
No 382
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.79 E-value=96 Score=28.48 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHccCc------------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740 318 DPETRTFNILIGAYGKKRM------------YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE 385 (502)
Q Consensus 318 ~~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 385 (502)
+-|+.+|-.++..--..-. .+.-+.+++++.+.+. .+...+-.++..+.+..+.+...+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667777777654322111 2334455666555533 25555666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHH
Q 010740 386 GMKADTKTFCCLINGYAN---AGLFHKVISSVRLA 417 (502)
Q Consensus 386 ~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~ 417 (502)
. .-+...|...+..... .-.++....+|...
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 2 1134455555544333 22345555555433
No 383
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.64 E-value=92 Score=28.21 Aligned_cols=136 Identities=10% Similarity=-0.011 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH
Q 010740 175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDE----RSVTPNT 250 (502)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~ 250 (502)
+..|...++.|..+ +..+.++-.+..++..+..|-.--...+-....-|++.|+.+.|++.+....+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555554432 22223333334444443222223344566677788899998888887776544 4666676
Q ss_pred HHHHHHHHH-HhccCChHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 251 VTQNIVLGG-YGKAGMFDQMERVLSGMLESATC---KPDVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 251 ~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
..+..-+.. |....-+.+-++..+.+.+++|- +....+|..+- |....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 655544333 33333344445555555555432 11223444332 3455678888888766654
No 384
>PRK10941 hypothetical protein; Provisional
Probab=68.51 E-value=86 Score=27.84 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=25.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 010740 151 LVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMK 206 (502)
Q Consensus 151 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 206 (502)
-.+|.+.++++.|+.+.+.+.... +.++.-+..-.-.|.+.|.+..|..=++...
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 334445555555555555554442 2333334444444445555555544444443
No 385
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.05 E-value=42 Score=30.20 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 220 TLIKACVDAMRFELIETLYQDMDERSVTP-NTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
.|..+..+.|+..+|.++|+++.+.-.-. -......|+.++....-+.++..++.+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555666666666666655441110 1122345566666655555555555544
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.32 E-value=54 Score=25.06 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 444 EMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 444 ~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
++.++|+.|..+|+.- -...|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7777888888776654 3556777777778888888888888764
No 387
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.01 E-value=26 Score=21.27 Aligned_cols=34 Identities=15% Similarity=0.361 Sum_probs=20.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 154 LGKSGQPELARKVFNEMVEEGIEPTPELYTALLA 187 (502)
Q Consensus 154 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (502)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445555666666666666666666666655543
No 388
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.99 E-value=55 Score=28.17 Aligned_cols=118 Identities=11% Similarity=-0.020 Sum_probs=78.2
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHcCCHH
Q 010740 366 FSDMGDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQIAENV-SFYNAVISACIKADDLM 443 (502)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 443 (502)
|....++..|...|.+.+. +.|+.. -|..-+..+.+..+++.+..--+..++. .||. .....+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 4455677888887777666 467764 4456677777888888888777777664 4553 33444556667778888
Q ss_pred HHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 444 EMERVYKRMK----EKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 444 ~a~~~~~~~~----~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
+|+..+.+.. +..+.|-...+..|..+=-+.=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888774 3345566667777776655555555666655553
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=66.89 E-value=14 Score=23.92 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=9.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHh
Q 010740 185 LLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~ 205 (502)
+|.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 390
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.35 E-value=24 Score=25.27 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 444 EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 444 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
+.++.+++....+...-+-....|.-.|.+.|+.|.|++-|+.-....|+
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 33445555555443333333444555566666666666666665555544
No 391
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.73 E-value=51 Score=23.86 Aligned_cols=79 Identities=20% Similarity=0.118 Sum_probs=46.9
Q ss_pred hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010740 122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201 (502)
Q Consensus 122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 201 (502)
...++|..+-+|+...+. -...+-..-+..+...|++++|..+.+.+- .||...|-.|-. .+.|..+++...
T Consensus 19 HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~r 90 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESR 90 (115)
T ss_pred hHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHH
Confidence 356777777777776541 122222233455667777777777766652 577766665543 356666666666
Q ss_pred HHHhhcC
Q 010740 202 LNQMKTL 208 (502)
Q Consensus 202 ~~~~~~~ 208 (502)
+.++...
T Consensus 91 l~rla~s 97 (115)
T TIGR02508 91 LNRLAAS 97 (115)
T ss_pred HHHHHhC
Confidence 6666554
No 392
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=64.71 E-value=92 Score=26.79 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010740 234 IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE 278 (502)
Q Consensus 234 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 278 (502)
-.++.+-....++.-+.....+++ +...|+...|+..++.-..
T Consensus 178 L~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 178 LKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVN 220 (333)
T ss_pred HHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhc
Confidence 333444444455555555554444 4456677666666665544
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.57 E-value=1.3e+02 Score=28.33 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 251 VTQNIVLGGYGKAGMFDQMERVLSGMLESAT-CKPDVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
..+.-+...|..+|+++.|++.|-+...--. .+.....|-.+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567778888888888888888887532110 011234455666666777888887777777665
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.55 E-value=46 Score=27.74 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740 283 KPDVWTMNTILSVFANKGQVDMMERWYEKFR 313 (502)
Q Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (502)
.|+...|..++.++...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555555554444
No 395
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.68 E-value=1.8e+02 Score=29.84 Aligned_cols=312 Identities=8% Similarity=-0.019 Sum_probs=150.2
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
....+.|++.++.++-..+... +.. ...|..+...+ ....+++....+++-. +.+.....-...+..+.+.++
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~d~---pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLKDY---PLYPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHCCCHHHHHHHHHhccCC---CcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccC
Confidence 3455778888888777776432 221 12233332222 1234555554444432 212233334455666677788
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH--HH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME--RV 272 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~--~~ 272 (502)
+...+.++.. .+.+...--....+....|+.++|......+-..|.. ....++.++..+.+.|...... +-
T Consensus 115 w~~~~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R 187 (644)
T PRK11619 115 WRGLLAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLER 187 (644)
T ss_pred HHHHHHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8777763311 1345555556677788888887777777666555443 4567777777777666443321 22
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHccCcH
Q 010740 273 LSGMLESATCKPDVWTMNTILSVFA------------NKGQVDMMERWYEKFRNFGIDPETRTFN---ILIGAYGKKRMY 337 (502)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~ 337 (502)
++..... .+...-..+..... -..+...+...+. .++++...-. ..+.-+. ..+.
T Consensus 188 ~~~al~~----~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rla-r~d~ 257 (644)
T PRK11619 188 IRLAMKA----GNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVA-RQDA 257 (644)
T ss_pred HHHHHHC----CCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHH-HhCH
Confidence 2222221 11111111211110 0011111111111 1122221111 1222222 2345
Q ss_pred HHHHHHHHHHHHcC-CCCC--hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010740 338 DKMSSVMEYMRKLQ-FPWT--SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV 414 (502)
Q Consensus 338 ~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (502)
+.|..++....... ..+. ...+..+....+..+...++...++..... ..+......-+..-...++++.+...+
T Consensus 258 ~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 258 ENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 67777777654433 2111 122333333333332244555555543322 123444444455555777777777777
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 415 RLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 415 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
..|-... .-...-.--+.+++...|+.++|..+|+.+.
T Consensus 336 ~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 336 ARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7664432 2233344456677666788888888887764
No 396
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.66 E-value=56 Score=23.98 Aligned_cols=81 Identities=16% Similarity=0.046 Sum_probs=48.3
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 199 (502)
.....++|..+.+|+...+ .-...+-..-+..+..+|++++| +..-... ..||...|-+|- -.+.|-.+++.
T Consensus 18 G~HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~--a~klGL~~~~e 89 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALC--AWKLGLASALE 89 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHH--HHHCT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHH--HHhhccHHHHH
Confidence 3457888999999988875 22223334445667788888888 2222222 256666665543 45778888888
Q ss_pred HHHHHhhcC
Q 010740 200 VTLNQMKTL 208 (502)
Q Consensus 200 ~~~~~~~~~ 208 (502)
..+.++...
T Consensus 90 ~~l~rla~~ 98 (116)
T PF09477_consen 90 SRLTRLASS 98 (116)
T ss_dssp HHHHHHCT-
T ss_pred HHHHHHHhC
Confidence 888877653
No 397
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.47 E-value=1.2e+02 Score=27.58 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 010740 289 MNTILSVFANKGQVDMMERWYEK 311 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~ 311 (502)
+.....-||+.||.+.|++.+.+
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33444445555555555544433
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.43 E-value=46 Score=26.24 Aligned_cols=45 Identities=7% Similarity=0.010 Sum_probs=19.7
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 010740 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424 (502)
Q Consensus 379 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (502)
.+.+.+.|++++..= ..++..+...++.-.|.++|+.+.+.+...
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 334444454444331 223344444444455555555555544333
No 399
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.93 E-value=1.3e+02 Score=28.08 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=64.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHH
Q 010740 397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC-IKADDLMEMERVYKRMKEK------HCRPDSETFSIMTE 469 (502)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~------g~~p~~~~~~~l~~ 469 (502)
.+..+.+.|-+..|.++.+.+...+..-|+...-.+|+.| .+.++++-.+++.+..... ..-|+. .|. ..-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~-a~S-~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF-AFS-IAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH-HHH-HHH
Confidence 4566778899999999999998877554666666677766 4678888788887776542 012322 233 233
Q ss_pred HHHhcCCc---------------HHHHHHHHHHHHhhhh
Q 010740 470 AYAKEGMN---------------DKVYALEQEKLQMLLE 493 (502)
Q Consensus 470 ~~~~~g~~---------------~~A~~~~~~~~~~~~~ 493 (502)
++...++. ++|.+.+++++...|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 44455555 8899999888887654
No 400
>PRK10941 hypothetical protein; Provisional
Probab=61.46 E-value=1.2e+02 Score=26.98 Aligned_cols=59 Identities=15% Similarity=-0.026 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740 220 TLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES 279 (502)
Q Consensus 220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 279 (502)
.+-.+|.+.++++.|+++.+.+...... +..-+..-.-.|.+.|.+..|..=++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3334445555555555555555544221 3333333344455555555555555555444
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.12 E-value=57 Score=23.24 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=10.8
Q ss_pred HHHhccCChHHHHHHHHHHHH
Q 010740 258 GGYGKAGMFDQMERVLSGMLE 278 (502)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~ 278 (502)
......|++++|.+.+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334445555555555555443
No 402
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.97 E-value=65 Score=25.38 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=41.8
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740 343 VMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 406 (502)
+.+.+.+.|.+++. -=..++..+...++.-.|.++|+++.+.+...+..|...-+..+...|-
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 44455566665333 2345566666666668888888888887777777777777777777664
No 403
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.87 E-value=1.5e+02 Score=27.83 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCC------------------CCCHHHHHH---HHHHHHccCc
Q 010740 285 DVWTMNTILSVFANKGQVDMMERWYEKFRN-------FGI------------------DPETRTFNI---LIGAYGKKRM 336 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~------------------~~~~~~~~~---l~~~~~~~g~ 336 (502)
.+.++-.+-..+...|+.+.|.+++++.+- ... .-|...|.+ .+..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 555666677778888888877777776641 011 011112222 2334445555
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHhHHHHHHHHH
Q 010740 337 YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS-DMGDAKHMEYTFEQM 382 (502)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m 382 (502)
+..|.++.+-+...+..-|+.....+|+.|+ +.++++-.+++++..
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 5555555555555554445544444555443 334444444444443
No 404
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=60.33 E-value=4.1 Score=21.68 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHC
Q 010740 441 DLMEMERVYKRMKEK 455 (502)
Q Consensus 441 ~~~~a~~~~~~~~~~ 455 (502)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555543
No 405
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.68 E-value=1.3e+02 Score=26.81 Aligned_cols=100 Identities=7% Similarity=-0.026 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCC---
Q 010740 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDE----RSVTPNTVTQNI-VLGGYGKAGMFDQMERVLSGMLESATCKP--- 284 (502)
Q Consensus 213 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 284 (502)
-...++..+..-|++.++.+.+.+..++..+ .|.+.|+..... |.-.|....-+++-++..+.+++++|--.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3345556666666666666666655554332 344444433222 22233444445566666666666543211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 285 DVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
...+|.-+. +....++.+|-.++.+...
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 112222222 2233456666666655543
No 406
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=59.48 E-value=2.4e+02 Score=29.92 Aligned_cols=81 Identities=5% Similarity=-0.045 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010740 373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK-LQIAENVSFYNAVISACIKADDLMEMERVYKR 451 (502)
Q Consensus 373 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 451 (502)
+.-.+.|.++...--.-|..++..-..-+...|++..+.+++.++.+ .+-.++...|..++..+...|-- ....+++.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~ 1291 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKN 1291 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhh
Confidence 33445555554332223445555555555666777777777765544 34455666666666666655543 33444455
Q ss_pred HHH
Q 010740 452 MKE 454 (502)
Q Consensus 452 ~~~ 454 (502)
+..
T Consensus 1292 ~~~ 1294 (1304)
T KOG1114|consen 1292 WMR 1294 (1304)
T ss_pred hee
Confidence 443
No 407
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=59.40 E-value=2.6e+02 Score=30.17 Aligned_cols=325 Identities=11% Similarity=0.081 Sum_probs=160.1
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHH-------HHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMK-------LLVLLGKSGQ---PELARKVFNEMVEEGIEPTPELYTAL 185 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l 185 (502)
.++.....|++|+..|+++... ++.-.+.|.+ ++.-....|+ +++|+.-|+.+... +--+--|---
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 558 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGK 558 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhH
Confidence 4566788999999999999875 4444444443 3333333444 77788888877643 2222334333
Q ss_pred HHHHHhCCCHHHHHHHHHHhhcCCCCCCC--------------------HHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 010740 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPD--------------------VYTYSTLIKACVDA---MRFELIETLYQDMD 242 (502)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~~ll~~~~~~---~~~~~a~~~~~~~~ 242 (502)
.-.|-+.|++++-++.+.-..++..-.|- ..+|.-++-+.... -...+-+++|+.+.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILY 638 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 44567788888877777666554322222 11222222222111 11223344555544
Q ss_pred hCCCCCC--------HHH-----HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010740 243 ERSVTPN--------TVT-----QNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY 309 (502)
Q Consensus 243 ~~g~~~~--------~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 309 (502)
.+ ..|. ..+ +..++. | -.|..---.++|+...+ .++..+.....-+.+..|.++-+.+..
T Consensus 639 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (932)
T PRK13184 639 HK-QQATLFCQLDKTPLQFRSSKMELFLS-F-WSGFTPFLPELFQRAWD----LRDYRALADIFYVACDLGNWEFFSQFS 711 (932)
T ss_pred hh-ccCCceeeccCchhhhhhhhHHHHHH-H-HhcCchhhHHHHHHHhh----cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 32 1211 111 111111 1 12333334455555543 345566666666778888888777666
Q ss_pred HHHHhC----CCCCCH--------HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHH
Q 010740 310 EKFRNF----GIDPET--------RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEY 377 (502)
Q Consensus 310 ~~~~~~----~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 377 (502)
+.+.+. ..+.+. ..|-.-+.++.....++++.+.+...... .-...+..++.-....++.+....
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 788 (932)
T PRK13184 712 DILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPT---LILYAFDLFAIQALLDEEGESIIQ 788 (932)
T ss_pred HHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHH---HHHHHHHHHHHHHHHhccchHHHH
Confidence 655531 111111 11222244445445555555433322110 012233333333344455555555
Q ss_pred HHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 378 TFEQMHAEGMKADT--KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 378 ~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
+.+.+...-..... .....-+.+|.-..++++|-+++..........+ ...+-....-+.-.++-+.|...|...++
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 789 LLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 55555543222211 2334557788888889999888864433211111 22222222223456777777777777663
No 408
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.58 E-value=89 Score=24.59 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010740 216 YTYSTLIKACVDAMR-FELIETLYQDMDERSVTPNTVTQNIVLGGYGKA 263 (502)
Q Consensus 216 ~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 263 (502)
..|..++.+...... --.+..+|..|.+.+.+++..-|..++.++.+.
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 345555555544433 333445555555555555555555555554443
No 409
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.56 E-value=2.2e+02 Score=29.09 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-C--CHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHH
Q 010740 439 ADDLMEMERVYKRMKEKHCR-P--DSETFS-----IMTEAYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 439 ~g~~~~a~~~~~~~~~~g~~-p--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 489 (502)
.|+..+..+.........-+ | ....|. .+...|...|+.++|.+...+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 67777755555443322111 2 344553 344457778999999888877654
No 410
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.52 E-value=85 Score=24.33 Aligned_cols=68 Identities=7% Similarity=-0.046 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 388 KADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIA-ENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 388 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.++..+--.+..++.+..+ ..+.+.+++.+.+...+ ........|.-++.+.++++++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444444555544433 44555555555542111 12222333444556666666666666666553
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.49 E-value=91 Score=25.61 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHcCCCCCH---H-----HHHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 160 PELARKVFNEMVEEGIEPTP---E-----LYTALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~---~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
++.|+.+|+.+.+.- +++. . .-...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~-~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEF-SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 466888888777653 2221 1 112334567778888888888887765
No 412
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=58.11 E-value=32 Score=22.62 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (502)
.|....++.++..+++..-.+.+...++++.+.| ..+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3455677777777777777888888888888777 36677776666666553
No 413
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.86 E-value=63 Score=22.69 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740 164 RKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELI 234 (502)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 234 (502)
.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. . .|+ .|..++.++...|.-+.|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r---g~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-Q---KEG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-c---CCc--HHHHHHHHHHHcCchhhh
Confidence 344445554442 333333333222223455555555555554 2 122 344555555555544333
No 414
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.64 E-value=67 Score=28.10 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 220 TLIKACVDAMRFELIETLYQDMDE----RS-VTPNTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 220 ~ll~~~~~~~~~~~a~~~~~~~~~----~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455556666666666666665532 22 2334445555666666666666665554443
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.50 E-value=33 Score=30.62 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 010740 141 QPKEGT-YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182 (502)
Q Consensus 141 ~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 182 (502)
.||.++ |+..|....+.||+++|++++++..+.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 455554 568888888888888888888888888764333333
No 416
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=56.50 E-value=1.5e+02 Score=26.58 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----
Q 010740 227 DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN---- 298 (502)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 298 (502)
..+++..+...+......+. ......+...|.. ..+...|.++|....+. -.......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----GLAEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----ccHHHHHhHHHHHhcCCCc
Confidence 46778888888888877543 2444444444443 45688899999977543 234444445555554
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010740 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYG 332 (502)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (502)
..+..+|..+|++..+.|..+...+...+...|.
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~ 159 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL 159 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 4488999999999998875543223333444443
No 417
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=56.40 E-value=1.4e+02 Score=26.30 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHh
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKE 136 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 136 (502)
-.+..+++.+.+.+....|+.+.+....
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 3455667777777777777777766654
No 418
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=56.09 E-value=11 Score=24.48 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=20.9
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEG 145 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~ 145 (502)
.-+++.|+..|..+...+.++|+..
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 5699999999999998887777653
No 419
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.78 E-value=33 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 010740 395 CCLINGYANAGLFHKVISSVRLASKLQIA 423 (502)
Q Consensus 395 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 423 (502)
+..|....+.||+++|+.+++++++.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 35555555555555555555555555543
No 420
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.54 E-value=3.1e+02 Score=29.94 Aligned_cols=57 Identities=9% Similarity=0.009 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 010740 253 QNIVLGGYGKAGMFDQMERVLSGMLESATCK-PD-VWTMNTILSVFANKGQVDMMERWY 309 (502)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~ 309 (502)
|..+++.+-+.+..+.+.++-...++..+.. |. ..+++.+.+.....|.+-+|.+.+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 4455555555666666666655555432211 11 123444555555555555554443
No 421
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.77 E-value=2.3e+02 Score=27.80 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740 268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFR 313 (502)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (502)
+..+.++.+.+..|+..+......++. ...|+...|+.+++++.
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH
Confidence 344445555444455555555544443 24566666666666654
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=1.6e+02 Score=26.16 Aligned_cols=123 Identities=11% Similarity=0.065 Sum_probs=59.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHHHH
Q 010740 256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVW-------TMNTILSVFANKGQVDMMERWYEK----FRNFGIDPETRTF 324 (502)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~ 324 (502)
+.+-..+.+++++|+..+.+++.+ |+..+.. +...+...|...|++...-+.... |.+..-+......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 445556677777777777777654 4444432 344455666666666554444332 2222222333444
Q ss_pred HHHHHHHHcc-CcHHHHHHHHHHHHHcCCCCChH-----HHHHHHHHHHhcCCHhHHHHHH
Q 010740 325 NILIGAYGKK-RMYDKMSSVMEYMRKLQFPWTSS-----TYNNVIEAFSDMGDAKHMEYTF 379 (502)
Q Consensus 325 ~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~ 379 (502)
..|+..+... ..++..+.+.....+....-... .-..++..+.+.|.+.+|+.+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4555444332 33444444444444332221111 1223444555556666555444
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.68 E-value=76 Score=22.32 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199 (502)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 199 (502)
.+-++++.+.+.| -.+......+-.+-...|+.+.|.+++..+. +| +..|..++.++...|.-.-|.
T Consensus 20 ~~~~v~d~ll~~~--ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQG--LLTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcC--CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 3456777777776 2333344444444446788999999999987 54 346777888888877755554
No 424
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.64 E-value=43 Score=31.91 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=76.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740 113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191 (502)
Q Consensus 113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (502)
.-...+...+.++.|+.++..+.+. .|| +..|..-..++.+.+++..|+.=+..+.+.. +-....|..=..++.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMA 84 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHh
Confidence 3445566789999999999999885 454 4445555588999999999999888888764 2223344444455666
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD 227 (502)
Q Consensus 192 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 227 (502)
.+++.+|+..|+..... .|+..-....+.-|-.
T Consensus 85 l~~~~~A~~~l~~~~~l---~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKL---APNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhc---CcCcHHHHHHHHHHHH
Confidence 67788888888888764 5777666666665543
No 425
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.29 E-value=1.8e+02 Score=26.53 Aligned_cols=80 Identities=5% Similarity=-0.015 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 010740 303 DMMERWYEKFRNFGI----DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378 (502)
Q Consensus 303 ~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (502)
++|.+.|++....+. ..+......++....+.|..+.-..+++..... .+...-..++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 345555555544211 223333344444444455444433333333322 1344455555555555555555555
Q ss_pred HHHHHHc
Q 010740 379 FEQMHAE 385 (502)
Q Consensus 379 ~~~m~~~ 385 (502)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 5555553
No 426
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.89 E-value=22 Score=32.22 Aligned_cols=88 Identities=19% Similarity=0.093 Sum_probs=64.1
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELYTALLAAYCRNSLI 195 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 195 (502)
.....|.+++|++.|...++.. ++....|..-..++.+.+.+..|.+=++...+.+ || ..-|-.--.+..-.|++
T Consensus 123 eAln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhch
Confidence 3446788999999998888764 6677778888888888888888888888877653 33 23344334444556888
Q ss_pred HHHHHHHHHhhcC
Q 010740 196 DEAFVTLNQMKTL 208 (502)
Q Consensus 196 ~~a~~~~~~~~~~ 208 (502)
++|...|+...+.
T Consensus 199 e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 199 EEAAHDLALACKL 211 (377)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887765
No 427
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.81 E-value=2.8e+02 Score=28.66 Aligned_cols=102 Identities=11% Similarity=0.035 Sum_probs=51.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740 151 LVLLGKSGQPELARKVFNEMVEEGIEP---TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD 227 (502)
Q Consensus 151 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 227 (502)
++-+.+.+.+++|+++.+..... .+ -......+|..+...|++++|-...-.|.. -+..-|..-+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhcc
Confidence 44555666666666665554322 33 234555666666666666666666666653 234444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740 228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK 262 (502)
Q Consensus 228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 262 (502)
.++......+ +.......+...|..++..+..
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4443322211 1111112345566666666655
No 428
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.70 E-value=88 Score=30.87 Aligned_cols=97 Identities=15% Similarity=0.045 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010740 335 RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV 414 (502)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (502)
|+...|...+.........-.-+....|.....+.|-...|-.++.+..... ...+.++..+.+++....+++.|++.+
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 4444444444433322221122233334444445555555655555554433 233445666666666666677777766
Q ss_pred HHHHhcCCCCChHHHHHHH
Q 010740 415 RLASKLQIAENVSFYNAVI 433 (502)
Q Consensus 415 ~~~~~~~~~~~~~~~~~l~ 433 (502)
+.+.+.. +.+..+-+.|.
T Consensus 700 ~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 700 RQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHhcC-CCChhhHHHHH
Confidence 6666543 33344444333
No 429
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.65 E-value=1.5e+02 Score=29.32 Aligned_cols=101 Identities=8% Similarity=-0.040 Sum_probs=69.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHH
Q 010740 296 FANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375 (502)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (502)
+...|+...|.+.+.........-.......|.+.+.+.|....|-.++.+...... ..+.++-.+.+++....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHH
Confidence 445778888888887665432222223445566666777788888888887777653 3667778888999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q 010740 376 EYTFEQMHAEGMKADTKTFCCLI 398 (502)
Q Consensus 376 ~~~~~~m~~~~~~p~~~~~~~l~ 398 (502)
++.|++..+... -+...-+.|.
T Consensus 696 ~~~~~~a~~~~~-~~~~~~~~l~ 717 (886)
T KOG4507|consen 696 LEAFRQALKLTT-KCPECENSLK 717 (886)
T ss_pred HHHHHHHHhcCC-CChhhHHHHH
Confidence 999999887642 2334444443
No 430
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.44 E-value=1.4e+02 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=16.0
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 326 ILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
.++..|.+.-+|.++.++++.+.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777766654
No 431
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=52.37 E-value=69 Score=23.67 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=29.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 149 KLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 149 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
++++.+.+|...++|+++++.|.++| ..+...-+.|-..+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 56777888888999999999999888 566655554444433
No 432
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.76 E-value=1.9e+02 Score=26.44 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKL---QIAENVSFY--NAVISACIKADDLMEMERVYKRMKE-----KHCRPDSE 462 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~ 462 (502)
....++...-+.++.++|+++++++.+. .-.|+...| .....++...||.+++.+.+++..+ .|++|++.
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Q ss_pred --HHHHHHHHHHhcCCcHHHHH
Q 010740 463 --TFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 463 --~~~~l~~~~~~~g~~~~A~~ 482 (502)
.|..=-..|.+.|++....+
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
No 433
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.72 E-value=1.5e+02 Score=25.30 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhCCCHHHHHHHHHHhh
Q 010740 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEP---TPELY--TALLAAYCRNSLIDEAFVTLNQMK 206 (502)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 206 (502)
+.+...-+|.|+--|.-...+.+|.+.|..-. |+.+ +...+ ..-|...+..|+.++|++..+++.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 34455556666555555555555555554322 3333 22222 334555666677777776666653
No 434
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.60 E-value=29 Score=29.50 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=28.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 402 ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.+.++.+.+.+++.++... .+.....|--+...-.+.|+++.|.+.+++..+.
T Consensus 6 ~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3445555555555555553 2334455555555555556666666655555553
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.52 E-value=2.2e+02 Score=26.91 Aligned_cols=93 Identities=10% Similarity=0.076 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCC
Q 010740 180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQ---PDVYTYSTLIKACVDAMRFELIETLYQDMDER---------SVT 247 (502)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------g~~ 247 (502)
..+..+...|..+|+++.|++.|.+.... +. ..+..|-.+|..-.-.|+|.....+..+.... .++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY--CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY--CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh--hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 45677888899999999999999886542 22 22344566666777788887777666665543 133
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 248 PNTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
+-...+..+.....+ ++..|.+.|-..
T Consensus 229 ~kl~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 344455555544443 666666665443
No 436
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.46 E-value=1.8e+02 Score=25.82 Aligned_cols=88 Identities=10% Similarity=0.048 Sum_probs=47.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---
Q 010740 150 LLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACV--- 226 (502)
Q Consensus 150 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--- 226 (502)
=|++++..+++.+++...-+.-+.--...+.+...-|-.|.+.|+...+.++-.......+ ..+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHH
Confidence 4567777777777666554443321122234444455566677777777766666554321 122223555444443
Q ss_pred --hcCCHHHHHHHH
Q 010740 227 --DAMRFELIETLY 238 (502)
Q Consensus 227 --~~~~~~~a~~~~ 238 (502)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 356666666655
No 437
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.41 E-value=1e+02 Score=22.81 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888887776
No 438
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.92 E-value=1.7e+02 Score=25.28 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-C-----------CCCCHHHHHHHH
Q 010740 331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE-G-----------MKADTKTFCCLI 398 (502)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~l~ 398 (502)
|.+..+-+-..++.+-....+++-+......++ +...||..+|+..++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444333334444344444443333333332 33456666665555443221 1 134444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC
Q 010740 399 NGYANAGLFHKVISSVRLASKLQIAE 424 (502)
Q Consensus 399 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (502)
..|. .+++++|.+++.++-+.|+.|
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 4333 234555555555555555443
No 439
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.54 E-value=3.9e+02 Score=29.56 Aligned_cols=161 Identities=8% Similarity=0.025 Sum_probs=99.3
Q ss_pred HHccCcHHHHHH------HHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH-------HHcCCCCCHHHHHHH
Q 010740 331 YGKKRMYDKMSS------VMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQM-------HAEGMKADTKTFCCL 397 (502)
Q Consensus 331 ~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m-------~~~~~~p~~~~~~~l 397 (502)
....|.+.++.+ ++......-.+.....|..+...+-+.|+.++|...-... ......-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344566666665 5543332223345677888888888999998887664432 111112233456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc-------CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CCCHHH
Q 010740 398 INGYANAGLFHKVISSVRLASKL-------QIAENVSFYNAVISACIKADDLMEMERVYKRMKEK-----HC--RPDSET 463 (502)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~--~p~~~~ 463 (502)
...+...++...|...+...... ..++...+++.+-..+...++++.|.++.+.+... |. -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666667777777776655443 12333444444444455568888888888877653 21 125667
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 464 FSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
+..+.+.+...+++..|+...+......
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 7788888888888888887777766653
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.53 E-value=2.3e+02 Score=26.75 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=41.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG--TYMKLLVLLG--KSGQPELARKVFNEMVEE 173 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 173 (502)
....+...++|..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566789999999999998876 344444 4555555554 566788999999987765
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.35 E-value=1.3e+02 Score=27.09 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
++++.+ +..++.|.-.++..+.-.+.+.=.+.+++.+|+.+..
T Consensus 264 EL~~~L-~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHL-EEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHH-HhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 344444 2334555555555555455555555555555555554
No 442
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.77 E-value=1.3e+02 Score=24.45 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=36.8
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740 347 MRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
+.+.|+..+.. =..++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34555553333 2244444444555667777787777777667777776777777776654
No 443
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.28 E-value=15 Score=33.24 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=41.9
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCcHHH
Q 010740 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE-TRTFNILIGAYGKKRMYDK 339 (502)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 339 (502)
...|.++.|++.|...++.. .+....|..-.+++.+.+.+..|++-+...... .|| ...|-.--.+-...|+|++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 34455666666555554431 233344444455555555555555555555432 222 1222222223333455666
Q ss_pred HHHHHHHHHHcCC
Q 010740 340 MSSVMEYMRKLQF 352 (502)
Q Consensus 340 a~~~~~~~~~~~~ 352 (502)
+...+....+.+.
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 6655555555544
No 444
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.93 E-value=1.8e+02 Score=29.33 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=57.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 010740 184 ALLAAYCRNSLIDEAFVTLNQMKTLP-NCQPDVYTYSTLIKACVDAMRFE------LIETLYQDMDERSVTPNTVTQNIV 256 (502)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~g~~~~~~~~~~l 256 (502)
+|+.+|...|++..+.++++.....+ |-+.=...||..++-..+.|.++ .+.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999888876532 22233456788888888888764 3444444443 44577788777
Q ss_pred HHHHhccCChHHHHHHHHHHH
Q 010740 257 LGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~ 277 (502)
+.+-..--.-.-.+-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554333333344444443
No 445
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.88 E-value=2.9e+02 Score=27.33 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010740 113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG---TYMKLLVLLGKSGQPELARKVFNEMVE 172 (502)
Q Consensus 113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 172 (502)
.++..|.+.++.++|+.++..|.-.. -... ..+.+.+.+.+..--++....++.++.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~---~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNT---MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccc---cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 46678889999999999988775431 1222 334445555555444444445555443
No 446
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.74 E-value=2.3e+02 Score=26.07 Aligned_cols=79 Identities=5% Similarity=0.021 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---cCCHHHHHH
Q 010740 160 PELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD---AMRFELIET 236 (502)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~ 236 (502)
.+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.++++.... +-+...|...++.... .-.++....
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 345566777766663 4556666777777777777777777777776642 3456666666665544 123445555
Q ss_pred HHHHH
Q 010740 237 LYQDM 241 (502)
Q Consensus 237 ~~~~~ 241 (502)
+|.+.
T Consensus 124 ~y~~~ 128 (321)
T PF08424_consen 124 VYEKC 128 (321)
T ss_pred HHHHH
Confidence 55443
No 447
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.71 E-value=1.5e+02 Score=24.81 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
....+.++..|...|+++.|.+.|.-+....-..=...|..=+..+.+.+......++++.+....+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
No 448
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.64 E-value=21 Score=27.36 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=22.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471 (502)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 471 (502)
.+.|.-.+|-.+|++|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667788888888888877654 66665543
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.62 E-value=1.9e+02 Score=25.13 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCcHHHHHHHHHHHHH
Q 010740 291 TILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK-KRMYDKMSSVMEYMRK 349 (502)
Q Consensus 291 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 349 (502)
.++..+-..|+++++...++++...+...+..--+.|-.+|-. .|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566677788888888888888877666666666666666633 3555556666655544
No 450
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.42 E-value=57 Score=31.12 Aligned_cols=52 Identities=13% Similarity=-0.042 Sum_probs=23.0
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 260 YGKAGMFDQMERVLSGMLESATCKPDVWT-MNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
+.+.++++.|..++.+.++. .||... |..-..++.+.+++..|+.=+.++.+
T Consensus 14 ~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 34444555555555555442 333222 22222444455555555544444443
No 451
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.39 E-value=2.7e+02 Score=26.76 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=12.0
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHH
Q 010740 370 GDAKHMEYTFEQMHAEGMKADTKT 393 (502)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~p~~~~ 393 (502)
.+.+.|+..+..|.+.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 455555555555555554444333
No 452
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.36 E-value=2.8e+02 Score=26.99 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=28.5
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE 232 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 232 (502)
..+.++...++++.+... |.......+|.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~-~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETR-GESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhc-cccccceeeehhhHHHHhcccch
Confidence 457788888888888765 44455555777777777777643
No 453
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.20 E-value=3e+02 Score=27.36 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCC----cHHHHHHHHHHHH
Q 010740 460 DSETFSIMTEAYAKEGM----NDKVYALEQEKLQ 489 (502)
Q Consensus 460 ~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~ 489 (502)
....+..++..|+...+ .-+++.+++.+..
T Consensus 482 e~pal~~lv~lY~~r~~~vWk~P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 482 ELPALMLLVKLYANRNEEVWKLPDVLSFLESAYH 515 (665)
T ss_pred cchHHHHHHHHHHhhhhHhhcChHHHHHHHHHHH
Confidence 34466677777765543 3455556655554
No 454
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.03 E-value=1.9e+02 Score=25.07 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=39.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 010740 254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN-KGQVDMMERWYEKFRN 314 (502)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 314 (502)
..+++.+-+.|+++++.+.++++.+. +...+..-.+.+-.+|-. .|....+.+++..+.+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~-~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEM-NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHT-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 34667788899999999999999876 445666667777666633 3445556666655544
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.71 E-value=2.7e+02 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740 426 VSFYNAVISACIKADDLMEMERVYKRM 452 (502)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 452 (502)
+.+|-.+.-+|...+++.+|.+.|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556655555543
No 456
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.63 E-value=3.5e+02 Score=27.92 Aligned_cols=88 Identities=10% Similarity=0.137 Sum_probs=41.4
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHH
Q 010740 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKM 340 (502)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 340 (502)
..-|+-++|..+.+++...........-.-.+..+|+..|+.....+++.-.+. ++..|+.-+..+.-++.-..+.+..
T Consensus 512 ~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 512 VVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChhhc
Confidence 334555566666666654321000111123344556666665555555544333 2234444444444445555566666
Q ss_pred HHHHHHHHH
Q 010740 341 SSVMEYMRK 349 (502)
Q Consensus 341 ~~~~~~~~~ 349 (502)
..+..-+.+
T Consensus 591 ~s~V~lLse 599 (929)
T KOG2062|consen 591 PSTVSLLSE 599 (929)
T ss_pred hHHHHHHhh
Confidence 555554444
No 457
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.58 E-value=1.3e+02 Score=27.03 Aligned_cols=57 Identities=9% Similarity=0.062 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437 (502)
Q Consensus 376 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (502)
.++|+.+.+.++.|....|.-+.-.+.+.=.+.+.+.+|+.+.... .-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHH
Confidence 4677777777777777777776666667667777777777665432 12555666555
No 458
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.31 E-value=3.3e+02 Score=30.05 Aligned_cols=157 Identities=9% Similarity=-0.073 Sum_probs=97.0
Q ss_pred HHHHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH-------HHcCCCCChHHHH
Q 010740 294 SVFANKGQVDMMER------WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYM-------RKLQFPWTSSTYN 360 (502)
Q Consensus 294 ~~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~~~~ 360 (502)
......|.+.++.+ ++...-..-.+.....|..+...+.+.|+.++|...-... ......-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34445566666665 5553222222455677888888899999999988765432 2222222445666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----C---CCCh
Q 010740 361 NVIEAFSDMGDAKHMEYTFEQMHAE-----G--MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ----I---AENV 426 (502)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~m~~~-----~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~ 426 (502)
.+.-.....+....|...+.+.... | .+|...+++.+-..+...++++.|.++++.+.... . -.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666667777787777766543 1 23334455555555566688899998888776541 1 2345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 010740 427 SFYNAVISACIKADDLMEMERVYK 450 (502)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~a~~~~~ 450 (502)
.+|..+.+.+...+++..|....+
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHh
Confidence 667777777777777777665443
No 459
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.30 E-value=3.1e+02 Score=27.16 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 183 TALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
..++.-|.+.+++++|+.++..|.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 3456677788888888888877754
No 460
>PLN02673 quinolinate synthetase A
Probab=46.27 E-value=97 Score=31.33 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=9.0
Q ss_pred ccccccCCCCCCCCCCCC
Q 010740 12 FSSSLLPSPLPHPHDTKT 29 (502)
Q Consensus 12 ~~~~~~~~~~p~p~~~~~ 29 (502)
+.-+++|.|.|.+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (724)
T PLN02673 12 SFLSLLPNPSPNFRTTHP 29 (724)
T ss_pred ceeeecCCCCCCccccCC
Confidence 334455666655444433
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.22 E-value=1.3e+02 Score=24.54 Aligned_cols=63 Identities=2% Similarity=-0.081 Sum_probs=39.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME 444 (502)
Q Consensus 381 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (502)
.+.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|..--+..+.+.|-+.+
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 34566776665543 3444444455666788888888877766666665566677777776544
No 462
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=45.81 E-value=2.8e+02 Score=26.57 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010740 412 SSVRLASKLQIAENVS--FYNAVISACIKADDLMEMERVYKRMKEKHCRP 459 (502)
Q Consensus 412 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p 459 (502)
++-..+...++.|... +...-+..+.+.+++..|-.+-+++++.+..|
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3333443334444322 23445556667788888888888888765443
No 463
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=45.49 E-value=4.1e+02 Score=28.40 Aligned_cols=70 Identities=11% Similarity=-0.024 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCcH
Q 010740 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN-FGIDPETRTFNILIGAYGKKRMY 337 (502)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 337 (502)
+.-.+.|.+++.--. ..|..++..-...+...|++..+.+++.++.+ .|-.++...|..++..+...|--
T Consensus 1213 d~~~e~y~el~kw~d-~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLD-ASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhHHHHHHHHHHHhh-cCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 334444444433211 23555555556666677777777777777665 34456666666666666666643
No 464
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.76 E-value=27 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIG 329 (502)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (502)
.|.-..|..+|++|++.|-+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34445566677777777666653 444544
No 465
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=43.96 E-value=98 Score=20.80 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=14.9
Q ss_pred hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 010740 122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLG 155 (502)
Q Consensus 122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (502)
=+.+-|..++..++... +.++..||++...+.
T Consensus 11 lDtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~ 42 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDE--KRSPQLYNAIGKLLD 42 (82)
T ss_pred HHHHHHHHHHHHhcchh--hcChHHHHHHHHHHH
Confidence 34445555555544432 334445555544443
No 466
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.90 E-value=55 Score=17.90 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740 441 DLMEMERVYKRMKEKHCRPDSETFSIM 467 (502)
Q Consensus 441 ~~~~a~~~~~~~~~~g~~p~~~~~~~l 467 (502)
.++.|..+|++.+.. .|++.+|...
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 466777777777763 4677776543
No 467
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.74 E-value=1.1e+02 Score=21.10 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=23.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010740 149 KLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYT 183 (502)
Q Consensus 149 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 183 (502)
++++.+.++.--++|+++++.|.++| ..+...-+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 46677777788888888888888877 45554433
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.53 E-value=75 Score=20.90 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740 424 ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE 474 (502)
Q Consensus 424 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 474 (502)
|....++.++..+++..-.++++..+.++...|. .+..+|.--++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4445566777777777777777777777777664 3566666555555543
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.34 E-value=2.5e+02 Score=25.33 Aligned_cols=114 Identities=8% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 010740 292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD 371 (502)
Q Consensus 292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 371 (502)
++....+.++..+..+.+..+.. .......++.+...|++..|++++.+..+ -...+..+-..-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740 372 AKHMEYTFEQMHAEG-----MKADTKTFCCLINGYANAGLFHKVISSVRL 416 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (502)
+++.....+++.+.. ...|+..|..+..+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 470
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.13 E-value=1.3e+02 Score=22.22 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVE 172 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 172 (502)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456666666666666666666666654
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.12 E-value=1.3e+02 Score=22.14 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010740 158 GQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETL 237 (502)
Q Consensus 158 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 237 (502)
...++|..+.+.+...+. -...+--+-+..+.+.|+|++| +..-.. ...||...|..| +-.+.|--+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~---~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQC---HCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTT---S--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhccc---CCCccHHHHHHH--HHHhhccHHHHHHH
Confidence 345666666666665542 2223333334556666777776 222221 124666665433 33456666666666
Q ss_pred HHHHHhCC
Q 010740 238 YQDMDERS 245 (502)
Q Consensus 238 ~~~~~~~g 245 (502)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66555443
No 472
>PRK09857 putative transposase; Provisional
Probab=42.72 E-value=2.4e+02 Score=25.46 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=32.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010740 396 CLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD 460 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~ 460 (502)
.++......++.++..++++.+.+. .+......-.+..-+.+.|..+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334445554455555444443 222222333455555555655667777777777776543
No 473
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=42.57 E-value=56 Score=32.90 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH
Q 010740 300 GQVDMMERWYEKFRNFGIDPETR 322 (502)
Q Consensus 300 g~~~~a~~~~~~~~~~~~~~~~~ 322 (502)
|++.+|.+.+-.+......|...
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHH
Confidence 45555555555555444444433
No 474
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.47 E-value=81 Score=23.46 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=32.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 010740 362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFH 408 (502)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 408 (502)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44445555566677788888877776677777777777777777543
No 475
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.32 E-value=2e+02 Score=23.93 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=31.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--------------CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740 396 CLINGYANAGLFHKVISSVRLASKLQI--------------AENVSFYNAVISACIKADDLMEMERVYK 450 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 450 (502)
+++-.|-+.-++.++.++++.+.+..+ .+.-.+.|.....|.+.|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455555566666666655544321 2334455666666777777777776665
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.23 E-value=2.4e+02 Score=29.62 Aligned_cols=131 Identities=16% Similarity=0.129 Sum_probs=71.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740 153 LLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE 232 (502)
Q Consensus 153 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 232 (502)
.+..+|+++.|++.-..+ -+..+|..|......+|+.+-|+..|++... |+.|--.|.-.|+.+
T Consensus 652 LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~e 715 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLE 715 (1202)
T ss_pred eehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHH
Confidence 344566666666554432 3566677777777777777777777766553 333333455566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740 233 LIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKF 312 (502)
Q Consensus 233 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (502)
+..++.+....++ |..+. ...-.-.|+.++-.++++.. |..| ..|.. ....|.-++|.++.++.
T Consensus 716 KL~Km~~iae~r~---D~~~~---~qnalYl~dv~ervkIl~n~----g~~~--laylt----a~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 716 KLSKMMKIAEIRN---DATGQ---FQNALYLGDVKERVKILENG----GQLP--LAYLT----AAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred HHHHHHHHHHhhh---hhHHH---HHHHHHhccHHHHHHHHHhc----Cccc--HHHHH----HhhcCcHHHHHHHHHhh
Confidence 6665555443321 21111 11112246666666666544 2222 12221 23577888999999888
Q ss_pred HhC
Q 010740 313 RNF 315 (502)
Q Consensus 313 ~~~ 315 (502)
...
T Consensus 780 ~~~ 782 (1202)
T KOG0292|consen 780 EKQ 782 (1202)
T ss_pred ccc
Confidence 763
No 477
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.05 E-value=1.4e+02 Score=22.01 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010740 291 TILSVFANKGQVDMMERWYEKF 312 (502)
Q Consensus 291 ~l~~~~~~~g~~~~a~~~~~~~ 312 (502)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666554
No 478
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.93 E-value=2.2e+02 Score=24.37 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 010740 176 EPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP---DVYTYS--TLIKACVDAMRFELIETLYQDMD 242 (502)
Q Consensus 176 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~ 242 (502)
.+...-+|.|+--|.-...+.+|.+.|..-. ++.+ |..+++ .-+......|+++.|.+....+-
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3444444454444444444444444443322 2222 222222 23444455666666666555544
No 479
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.85 E-value=1.6e+02 Score=22.54 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010740 162 LARKVFNEMVEEGIEPT-PELYTALLAAYCRNSLIDEAFVTLNQ 204 (502)
Q Consensus 162 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 204 (502)
.+.++|..|...|+... +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777766655433 45566666666677777777776654
No 480
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.71 E-value=3.7e+02 Score=26.81 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=22.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 010740 402 ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI-KADDLMEMERVYKRM 452 (502)
Q Consensus 402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 452 (502)
.+.|-+..|+++.+.+.+....-|+...-.+|+.|+ +..++.-.+++++..
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555555555554444432223433444444432 334444444444443
No 481
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.16 E-value=1.5e+02 Score=23.30 Aligned_cols=63 Identities=6% Similarity=0.018 Sum_probs=37.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 010740 380 EQMHAEGMKADTKTFCCLINGYANA-GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443 (502)
Q Consensus 380 ~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (502)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|..--+..+...|-+.
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345566766665433 233444433 456677888888777765556665555666666666544
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.97 E-value=71 Score=24.01 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406 (502)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 406 (502)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34556666666677788888888888777777777777777777664
No 483
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.55 E-value=4.4e+02 Score=27.35 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=9.3
Q ss_pred CcHHHHHHHHHHHHHcCC
Q 010740 335 RMYDKMSSVMEYMRKLQF 352 (502)
Q Consensus 335 g~~~~a~~~~~~~~~~~~ 352 (502)
++...++.+++.+...|.
T Consensus 259 ~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 259 QDGAALLAKAQEMAACAV 276 (709)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 445555555555555444
No 484
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.54 E-value=2.5e+02 Score=24.51 Aligned_cols=89 Identities=9% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHH------------------hCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH
Q 010740 296 FANKGQVDMMERWYEKFR------------------NFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS 357 (502)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (502)
+.+.|++.+|..-|.+.+ +.. ......+..+..++...|++-++++.-.++...... ++.
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLd-k~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~-nvK 265 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELD-KMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVK 265 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH-HhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHH
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 386 (502)
.|-.-..+.+..-+..+|.+=|....+..
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcC
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.54 E-value=71 Score=23.77 Aligned_cols=47 Identities=4% Similarity=-0.131 Sum_probs=27.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 010740 397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443 (502)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (502)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444445555567777777766655555555555566666666544
No 486
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.17 E-value=39 Score=30.19 Aligned_cols=65 Identities=6% Similarity=0.034 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNA-VISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
|+..|...+..-.+.|.+.+...++.+..... |.|+..|-. --.-|...++++.+..+|......
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 33334433333334444445555554444432 334443322 111233445555555555544443
No 487
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=39.65 E-value=5.3e+02 Score=28.05 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLK 135 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~ 135 (502)
..+...++.+...++|.+|+.+.+.-+
T Consensus 695 ~LVL~~ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 695 ALVLAGIRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 556778888899999999998887543
No 488
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.52 E-value=3.4e+02 Score=25.76 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEE--GIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 205 (502)
+.-.|++...-.|+.....+.++.|.+. |..|.-.+--.+.-+|.-.|++.+|.+.|-.+
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666543 22222111123344555566666666666554
No 489
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.43 E-value=4.2e+02 Score=26.84 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=64.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKE------GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
....+..+|..++++|..-... ++.|. ..+..|--+|....++|.|.+++++..+.+ +.+..+--.+..+.
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSF 438 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHH
Confidence 3456778999999999865543 23332 234456667788899999999999999875 44566666677788
Q ss_pred HhCCCHHHHHHHHHHhhc
Q 010740 190 CRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~ 207 (502)
...|.-++|+........
T Consensus 439 ~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHhcchHHHHHHHHHHHh
Confidence 888888898887766543
No 490
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.16 E-value=2.4e+02 Score=24.00 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 290 NTILSVFANKGQVDMMERWYEKFRNF 315 (502)
Q Consensus 290 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (502)
-.+.....+.|+.++|.++|.++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34445556667777777777666654
No 491
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=38.90 E-value=76 Score=24.50 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010740 429 YNAVISACIKADDLMEMERVYKRMKEKHCR 458 (502)
Q Consensus 429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 458 (502)
+..++--+...|+++.|+.+.+.+++.|..
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 334444456788888888888888887754
No 492
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.24 E-value=60 Score=24.43 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740 431 AVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 476 (502)
.++..+...+..-.|.++++.+.+.|...+..|..--++.+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555566666667777778888777777777766666666666664
No 493
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.18 E-value=1.4e+02 Score=20.95 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 423 AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
.|...+|..-++.-.....-+. ++|+-....|+..|+..|.++++.+.-.=-.+...++++.|
T Consensus 7 ~~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred CChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 494
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.12 E-value=2.9e+02 Score=27.90 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 010740 296 FANKGQVDMMERWYEKFRNFGIDPE------TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369 (502)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (502)
..+..++..+.++|..-... ++.| ...+..|--+|.+..+.|.|.+++.+..+.... ++.+--.+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHh
Confidence 34566788888888655431 2222 345677778888999999999999999988654 555556666777788
Q ss_pred CCHhHHHHHHHHHH
Q 010740 370 GDAKHMEYTFEQMH 383 (502)
Q Consensus 370 ~~~~~a~~~~~~m~ 383 (502)
|..++|+.+.....
T Consensus 442 ~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 442 DKSEEALTCLQKIK 455 (872)
T ss_pred cchHHHHHHHHHHH
Confidence 88888888776654
No 495
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.37 E-value=5.2e+02 Score=27.26 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=11.4
Q ss_pred CcHHHHHHHHHHHHHcCCC
Q 010740 335 RMYDKMSSVMEYMRKLQFP 353 (502)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~ 353 (502)
++..+++.+++++...|..
T Consensus 259 ~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 259 GDGPEILAVADEMALRSLS 277 (830)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 5566666666666655553
No 496
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.11 E-value=3.4e+02 Score=25.00 Aligned_cols=116 Identities=7% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHH------HhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 010740 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGY------ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM 445 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 445 (502)
++++..++++....+. |.++.....|.++ ...-+|.....+|+.+.. +.|++.+--.=..+..+....+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 446 ERVYKRMKEK-HCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 446 ~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
+.+.+.+.+. ++.--...+..-...+.+.|+.++|...|++++.+
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
No 497
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.96 E-value=2.9e+02 Score=28.01 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCCHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPF-YQPKEGTYMKLLVLLGKSGQPE------LARKVFNEMVEEGIEPTPELYT 183 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~ 183 (502)
...++.+|+..|++.++.++++.+...+. -+.=...||..|+...+.|.++ .|.+++++.. +.-|..||.
T Consensus 31 ~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~a 107 (1117)
T COG5108 31 TASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYA 107 (1117)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHH
Confidence 34788899999999999999988765431 1222457888888888888765 3444444443 345677777
Q ss_pred HHHHHHHh
Q 010740 184 ALLAAYCR 191 (502)
Q Consensus 184 ~l~~~~~~ 191 (502)
.|+.+...
T Consensus 108 ll~~~sln 115 (1117)
T COG5108 108 LLCQASLN 115 (1117)
T ss_pred HHHHhhcC
Confidence 77766554
No 498
>PRK09462 fur ferric uptake regulator; Provisional
Probab=36.50 E-value=2.1e+02 Score=22.52 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740 346 YMRKLQFPWTSSTYNNVIEAFSDM-GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
.+.+.|...+. .=..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455665333 233444445443 45678888888888887777778877777888777754
No 499
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.45 E-value=5.1e+02 Score=26.90 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHccCc
Q 010740 269 MERVLSGMLESAT--CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR----------TFNILIGAYGKKRM 336 (502)
Q Consensus 269 a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~ 336 (502)
-...+.+|..+-. ......+...++-.|....+++...++.+.+.. -||.. .|...++--.+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCcc
Confidence 3345556644321 112345566677777778888888888877764 22211 12233333334577
Q ss_pred HHHHHHHHHHHHHcC--CCCChHH-----HHHH--HHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 010740 337 YDKMSSVMEYMRKLQ--FPWTSST-----YNNV--IEAFSDMGDAKHMEYTFEQMHAEGMKADTK 392 (502)
Q Consensus 337 ~~~a~~~~~~~~~~~--~~~~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 392 (502)
-++|+.+.-.+.+.. +.||... |.-+ -..|...+..+.|.+.|++.-+ +.|+..
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 777777766665543 2333321 1111 1123334455667777776655 355544
No 500
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.44 E-value=3.9e+02 Score=25.60 Aligned_cols=154 Identities=10% Similarity=-0.038 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740 318 DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397 (502)
Q Consensus 318 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 397 (502)
..+......++..+ .|+...++.+++.+...+...+. +...+++...... ..........+
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~-~d~~~~~~~~~ 233 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAAR-YDKDGDEHYDL 233 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhc-cCCCccHHHHH
Confidence 44555555555433 57777777777765543111111 1122222221110 11112223344
Q ss_pred HHHHHh---cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740 398 INGYAN---AGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD-----LMEMERVYKRMKEKHCRPDSETFSIMTE 469 (502)
Q Consensus 398 ~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 469 (502)
+.++.+ .++.+.|+.++..|.+.|..|....-..++.++...|. ..-|...++.....|.+-........+-
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~ 313 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVI 313 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 444443 47888899999999988876665544444445444442 2234444555555565433333333333
Q ss_pred HHHhcCCcHHHHHHHHHHHHh
Q 010740 470 AYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.++..-+-..+...++++.+.
T Consensus 314 ~l~~~pksn~~~~a~~~a~~~ 334 (413)
T PRK13342 314 YLALAPKSNAAYTAINAALAD 334 (413)
T ss_pred HHHcCCCccHHHHHHHHHHHH
Confidence 345555555555555555543
Done!