Query 010740
Match_columns 502
No_of_seqs 750 out of 2598
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 13:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.5E-35 1.2E-39 293.5 43.5 246 248-497 303-586 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.5E-34 2.9E-38 283.5 45.3 353 110-471 119-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-30 2.7E-34 240.6 46.6 370 116-498 7-376 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.4E-31 4.6E-36 256.5 24.7 188 287-474 27-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 1.9E-30 6.6E-35 248.5 26.1 186 217-403 28-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 7.5E-27 2.6E-31 220.2 46.2 355 109-476 34-388 (388)
7 2gw1_A Mitochondrial precursor 100.0 2.2E-25 7.6E-30 218.3 38.7 379 109-498 7-486 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 2.3E-24 7.9E-29 207.4 40.8 300 109-419 27-357 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 1.9E-23 6.6E-28 200.9 42.9 342 141-494 23-414 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.7E-23 1.3E-27 203.7 41.0 378 108-496 25-497 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.5E-22 5.1E-27 198.2 35.4 344 144-496 6-450 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.1E-20 3.8E-25 175.7 40.7 327 110-472 5-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 8.7E-21 3E-25 176.4 38.1 324 143-498 2-343 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.9E-20 6.5E-25 184.3 36.2 345 144-496 25-463 (537)
15 3hym_B Cell division cycle pro 99.9 5.4E-20 1.9E-24 168.9 31.6 289 180-477 23-321 (330)
16 2xm6_A Protein corresponding t 99.9 2.2E-17 7.7E-22 160.1 51.6 350 109-491 40-433 (490)
17 3hym_B Cell division cycle pro 99.9 1.2E-19 4.1E-24 166.6 31.9 292 142-442 20-321 (330)
18 1fch_A Peroxisomal targeting s 99.9 6.4E-20 2.2E-24 171.3 29.2 297 191-493 37-362 (368)
19 1fch_A Peroxisomal targeting s 99.9 8.7E-20 3E-24 170.4 26.6 303 120-450 37-354 (368)
20 2ooe_A Cleavage stimulation fa 99.8 8.6E-17 2.9E-21 157.6 42.8 368 119-495 23-497 (530)
21 4eqf_A PEX5-related protein; a 99.8 2.2E-19 7.4E-24 167.5 23.2 270 214-489 64-355 (365)
22 3cv0_A Peroxisome targeting si 99.8 2.1E-18 7.2E-23 158.1 28.4 271 219-496 25-321 (327)
23 4eqf_A PEX5-related protein; a 99.8 8.2E-19 2.8E-23 163.6 25.0 237 143-384 64-309 (365)
24 2xm6_A Protein corresponding t 99.8 1.4E-15 4.7E-20 147.5 47.5 332 109-470 76-449 (490)
25 4g1t_A Interferon-induced prot 99.8 6.5E-17 2.2E-21 156.3 36.1 370 109-497 52-466 (472)
26 3cv0_A Peroxisome targeting si 99.8 8.9E-18 3E-22 153.9 27.2 241 113-384 26-268 (327)
27 2ooe_A Cleavage stimulation fa 99.8 3.7E-16 1.3E-20 153.1 38.0 343 141-494 10-458 (530)
28 3mkr_A Coatomer subunit epsilo 99.8 3.4E-17 1.2E-21 146.6 27.6 276 186-483 6-287 (291)
29 3mkr_A Coatomer subunit epsilo 99.8 1E-16 3.4E-21 143.5 28.8 274 151-447 6-286 (291)
30 1xi4_A Clathrin heavy chain; a 99.8 1.9E-15 6.4E-20 154.1 39.2 331 109-498 986-1317(1630)
31 1b89_A Protein (clathrin heavy 99.8 1.9E-18 6.4E-23 158.0 15.4 307 120-478 15-329 (449)
32 4g1t_A Interferon-induced prot 99.8 7.4E-16 2.5E-20 148.9 33.4 336 110-464 96-469 (472)
33 1b89_A Protein (clathrin heavy 99.8 5.3E-18 1.8E-22 155.0 16.7 342 91-486 19-368 (449)
34 3spa_A Mtrpol, DNA-directed RN 99.7 5E-18 1.7E-22 167.5 11.9 116 286-401 127-246 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.7 4E-18 1.4E-22 168.2 10.5 152 319-475 125-286 (1134)
36 3uq3_A Heat shock protein STI1 99.7 1.1E-15 3.8E-20 134.7 25.0 227 216-491 6-237 (258)
37 2pl2_A Hypothetical conserved 99.7 1.8E-15 6.1E-20 129.4 23.0 197 285-487 4-211 (217)
38 1ouv_A Conserved hypothetical 99.7 4.3E-14 1.5E-18 125.7 32.5 229 249-496 5-257 (273)
39 1xi4_A Clathrin heavy chain; a 99.7 1.5E-13 5E-18 140.4 39.7 317 115-486 1056-1380(1630)
40 3uq3_A Heat shock protein STI1 99.7 4.3E-15 1.5E-19 130.9 25.6 225 179-419 5-235 (258)
41 3e4b_A ALGK; tetratricopeptide 99.7 5.8E-16 2E-20 147.9 21.3 349 114-494 9-391 (452)
42 2pl2_A Hypothetical conserved 99.7 2.9E-15 9.8E-20 128.1 22.6 198 249-453 4-212 (217)
43 3u4t_A TPR repeat-containing p 99.7 5.1E-15 1.8E-19 131.6 23.3 239 254-497 7-257 (272)
44 2ho1_A Type 4 fimbrial biogene 99.7 1.4E-14 4.8E-19 127.2 25.3 202 289-494 40-242 (252)
45 2h6f_A Protein farnesyltransfe 99.7 1E-14 3.4E-19 135.0 24.8 231 214-452 96-344 (382)
46 2vq2_A PILW, putative fimbrial 99.7 4.1E-14 1.4E-18 121.7 26.3 202 289-493 11-214 (225)
47 2q7f_A YRRB protein; TPR, prot 99.7 7.2E-15 2.5E-19 128.2 21.4 203 288-495 25-227 (243)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.7E-15 9.4E-20 133.6 18.8 223 120-350 17-244 (275)
49 3u4t_A TPR repeat-containing p 99.7 2.5E-14 8.6E-19 127.1 25.0 192 186-383 10-206 (272)
50 2ho1_A Type 4 fimbrial biogene 99.7 4.9E-14 1.7E-18 123.7 26.4 201 109-315 38-238 (252)
51 2h6f_A Protein farnesyltransfe 99.7 3.9E-14 1.3E-18 131.0 26.5 231 143-382 96-344 (382)
52 1ouv_A Conserved hypothetical 99.7 7.7E-13 2.6E-17 117.6 32.2 228 178-456 5-252 (273)
53 2q7f_A YRRB protein; TPR, prot 99.6 2.4E-14 8.2E-19 124.9 21.2 197 146-349 25-221 (243)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-14 6.1E-19 128.3 20.7 248 226-484 16-269 (275)
55 2vq2_A PILW, putative fimbrial 99.6 2E-13 6.9E-18 117.3 26.1 164 145-313 9-174 (225)
56 3sf4_A G-protein-signaling mod 99.6 8.8E-15 3E-19 138.2 18.8 304 141-477 6-363 (406)
57 3sf4_A G-protein-signaling mod 99.6 7.1E-14 2.4E-18 132.0 23.0 277 216-493 10-339 (406)
58 4a1s_A PINS, partner of inscut 99.6 4.2E-14 1.4E-18 133.9 20.5 282 180-491 49-373 (411)
59 2ond_A Cleavage stimulation fa 99.6 2.4E-12 8.4E-17 116.4 30.2 224 267-495 33-275 (308)
60 3vtx_A MAMA; tetratricopeptide 99.6 4.3E-13 1.5E-17 111.4 23.3 172 320-495 4-175 (184)
61 4a1s_A PINS, partner of inscut 99.6 5.7E-14 2E-18 133.0 20.2 279 109-420 49-372 (411)
62 4e6h_A MRNA 3'-END-processing 99.6 4.9E-11 1.7E-15 117.8 39.7 381 109-495 67-575 (679)
63 3ro2_A PINS homolog, G-protein 99.6 1.2E-13 4.2E-18 126.5 20.1 100 393-492 225-334 (338)
64 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.8E-18 126.8 19.6 274 114-420 11-332 (338)
65 3ulq_A Response regulator aspa 99.6 3.2E-13 1.1E-17 126.5 22.0 234 256-492 109-370 (383)
66 3ulq_A Response regulator aspa 99.6 9.4E-13 3.2E-17 123.3 23.6 165 288-454 186-367 (383)
67 3e4b_A ALGK; tetratricopeptide 99.6 2E-13 6.8E-18 130.3 19.2 312 148-491 7-352 (452)
68 4abn_A Tetratricopeptide repea 99.5 4.5E-13 1.5E-17 128.7 21.4 213 123-343 83-314 (474)
69 3vtx_A MAMA; tetratricopeptide 99.5 4.3E-12 1.5E-16 105.3 23.4 167 285-455 4-170 (184)
70 2ond_A Cleavage stimulation fa 99.5 1.2E-11 4.1E-16 111.9 27.6 220 125-351 33-271 (308)
71 3nf1_A KLC 1, kinesin light ch 99.5 1.4E-13 4.7E-18 124.9 13.9 249 215-492 27-309 (311)
72 4abn_A Tetratricopeptide repea 99.5 1.1E-12 3.7E-17 126.0 20.8 214 159-381 83-317 (474)
73 3nf1_A KLC 1, kinesin light ch 99.5 9.6E-14 3.3E-18 125.9 12.6 171 144-314 27-223 (311)
74 1hz4_A MALT regulatory protein 99.5 2.9E-11 9.8E-16 112.7 29.6 302 182-492 17-351 (373)
75 3q15_A PSP28, response regulat 99.5 1.2E-11 4.1E-16 115.5 25.3 232 256-491 107-366 (378)
76 3as5_A MAMA; tetratricopeptide 99.5 1.5E-11 5.3E-16 101.8 20.9 170 323-496 10-179 (186)
77 3q15_A PSP28, response regulat 99.4 3E-11 1E-15 112.8 24.9 228 224-454 110-364 (378)
78 4e6h_A MRNA 3'-END-processing 99.4 1.4E-09 4.6E-14 107.5 36.9 360 126-492 50-535 (679)
79 4gyw_A UDP-N-acetylglucosamine 99.4 1.1E-11 3.8E-16 123.8 22.3 169 321-493 9-177 (723)
80 1hz4_A MALT regulatory protein 99.4 2.3E-10 7.9E-15 106.6 28.0 271 117-420 23-322 (373)
81 3as5_A MAMA; tetratricopeptide 99.4 6.8E-11 2.3E-15 97.9 20.1 156 115-276 15-170 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.4 4.7E-11 1.6E-15 119.4 21.4 164 286-453 9-172 (723)
83 4i17_A Hypothetical protein; T 99.4 8.2E-11 2.8E-15 101.3 20.2 202 284-496 5-215 (228)
84 3edt_B KLC 2, kinesin light ch 99.3 1.6E-11 5.6E-16 109.3 14.5 230 260-490 11-281 (283)
85 4i17_A Hypothetical protein; T 99.3 3.9E-10 1.3E-14 97.0 22.6 206 248-467 5-220 (228)
86 3edt_B KLC 2, kinesin light ch 99.3 2.4E-11 8.3E-16 108.2 14.8 132 322-454 128-280 (283)
87 2fo7_A Synthetic consensus TPR 99.2 1.3E-09 4.3E-14 84.7 18.1 133 358-493 3-135 (136)
88 1qqe_A Vesicular transport pro 99.2 3.1E-10 1.1E-14 101.6 16.3 212 265-494 32-273 (292)
89 3dra_A Protein farnesyltransfe 99.2 2E-08 6.8E-13 89.1 26.4 161 335-498 124-296 (306)
90 3mv2_B Coatomer subunit epsilo 99.2 1.2E-08 4.1E-13 89.5 23.7 244 115-385 20-282 (310)
91 3qky_A Outer membrane assembly 99.2 2E-09 6.9E-14 94.6 19.2 190 284-494 13-228 (261)
92 2uy1_A Cleavage stimulation fa 99.2 6.4E-07 2.2E-11 85.8 37.8 348 122-492 28-415 (493)
93 3mv2_B Coatomer subunit epsilo 99.2 1.3E-08 4.4E-13 89.3 23.6 247 186-456 20-283 (310)
94 3urz_A Uncharacterized protein 99.2 1.9E-09 6.6E-14 91.0 17.4 161 111-278 7-185 (208)
95 1qqe_A Vesicular transport pro 99.1 3.7E-09 1.2E-13 94.6 18.8 208 230-454 32-268 (292)
96 3qky_A Outer membrane assembly 99.1 1.2E-08 4E-13 89.7 21.5 102 142-244 13-126 (261)
97 3urz_A Uncharacterized protein 99.1 6.3E-09 2.2E-13 87.8 18.9 135 327-467 60-196 (208)
98 2fo7_A Synthetic consensus TPR 99.1 4.9E-09 1.7E-13 81.3 17.0 127 147-277 4-130 (136)
99 2pzi_A Probable serine/threoni 99.1 1.1E-09 3.8E-14 110.0 16.3 173 297-476 402-583 (681)
100 3dra_A Protein farnesyltransfe 99.1 2E-07 6.7E-12 82.7 27.8 152 264-419 124-286 (306)
101 2pzi_A Probable serine/threoni 99.1 9.8E-10 3.4E-14 110.4 14.1 173 119-301 402-583 (681)
102 2vsy_A XCC0866; transferase, g 99.1 4.8E-09 1.7E-13 103.5 18.7 155 299-457 2-159 (568)
103 2r5s_A Uncharacterized protein 99.1 2.7E-09 9.2E-14 87.5 14.2 163 324-490 9-173 (176)
104 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.2E-08 7.4E-13 85.7 20.2 193 285-497 3-220 (225)
105 3rjv_A Putative SEL1 repeat pr 99.1 1.9E-08 6.6E-13 85.0 19.3 176 126-316 4-198 (212)
106 3qou_A Protein YBBN; thioredox 99.1 8.8E-09 3E-13 91.7 17.9 164 144-312 117-281 (287)
107 3qou_A Protein YBBN; thioredox 99.1 7.4E-09 2.5E-13 92.2 17.4 169 318-490 114-284 (287)
108 2r5s_A Uncharacterized protein 99.0 4.1E-09 1.4E-13 86.3 13.9 161 147-312 9-170 (176)
109 3rjv_A Putative SEL1 repeat pr 99.0 3.9E-08 1.3E-12 83.2 20.1 141 268-419 4-157 (212)
110 2vsy_A XCC0866; transferase, g 99.0 1.4E-08 4.8E-13 100.1 19.5 154 121-280 2-158 (568)
111 4ga2_A E3 SUMO-protein ligase 99.0 2.6E-09 8.8E-14 84.9 11.3 142 331-476 7-149 (150)
112 4ga2_A E3 SUMO-protein ligase 99.0 3E-09 1E-13 84.5 11.7 141 118-264 7-148 (150)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 7.5E-09 2.6E-13 93.3 15.0 225 228-482 4-253 (307)
114 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.5E-07 5.3E-12 80.3 22.2 205 178-421 3-214 (225)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 1.8E-08 6.1E-13 90.8 15.3 229 120-377 3-253 (307)
116 3u3w_A Transcriptional activat 98.9 3.3E-07 1.1E-11 81.9 23.5 164 328-491 82-267 (293)
117 2uy1_A Cleavage stimulation fa 98.9 1.1E-06 3.6E-11 84.4 28.1 331 124-487 11-380 (493)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.4E-08 2.5E-12 81.5 17.0 126 324-455 9-150 (213)
119 3q7a_A Farnesyltransferase alp 98.9 8.7E-07 3E-11 79.4 23.8 176 224-405 63-256 (349)
120 4gco_A Protein STI-1; structur 98.9 4.4E-08 1.5E-12 75.0 13.4 102 393-496 15-116 (126)
121 3u3w_A Transcriptional activat 98.9 4.4E-07 1.5E-11 81.0 21.9 92 257-348 82-182 (293)
122 3q7a_A Farnesyltransferase alp 98.9 3E-06 1E-10 75.9 26.3 173 121-301 67-257 (349)
123 2qfc_A PLCR protein; TPR, HTH, 98.9 3.6E-07 1.2E-11 81.6 20.6 166 326-491 80-267 (293)
124 3gyz_A Chaperone protein IPGC; 98.9 8.7E-08 3E-12 75.6 14.6 101 392-494 37-137 (151)
125 2qfc_A PLCR protein; TPR, HTH, 98.8 3.1E-07 1.1E-11 82.0 19.3 166 180-347 76-263 (293)
126 1a17_A Serine/threonine protei 98.8 3.1E-07 1E-11 74.0 17.4 132 357-491 14-147 (166)
127 4gco_A Protein STI-1; structur 98.8 2E-07 6.8E-12 71.2 14.7 91 114-207 19-109 (126)
128 2vgx_A Chaperone SYCD; alterna 98.8 3.2E-08 1.1E-12 78.2 10.4 98 394-493 24-121 (148)
129 3dss_A Geranylgeranyl transfer 98.8 4.9E-06 1.7E-10 74.2 25.4 191 303-500 91-314 (331)
130 3gw4_A Uncharacterized protein 98.8 7.5E-08 2.6E-12 80.7 13.3 138 356-493 26-179 (203)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.1E-07 2.1E-11 75.8 18.8 125 114-246 12-152 (213)
132 3dss_A Geranylgeranyl transfer 98.8 2.7E-05 9.2E-10 69.5 29.4 188 101-297 23-238 (331)
133 1a17_A Serine/threonine protei 98.8 6.1E-07 2.1E-11 72.2 17.0 126 111-241 16-143 (166)
134 2e2e_A Formate-dependent nitri 98.7 1.1E-07 3.6E-12 77.9 12.2 121 332-455 21-144 (177)
135 2c2l_A CHIP, carboxy terminus 98.7 8E-08 2.8E-12 85.2 11.9 96 251-349 5-100 (281)
136 1p5q_A FKBP52, FK506-binding p 98.7 4.2E-07 1.4E-11 82.8 16.6 97 392-490 197-294 (336)
137 2xcb_A PCRH, regulatory protei 98.7 2.7E-07 9.3E-12 72.3 13.2 99 394-494 21-119 (142)
138 4f3v_A ESX-1 secretion system 98.7 2.1E-07 7.3E-12 80.5 13.3 129 362-493 108-240 (282)
139 1na0_A Designed protein CTPR3; 98.7 8.2E-07 2.8E-11 67.3 15.4 97 145-244 10-106 (125)
140 2c2l_A CHIP, carboxy terminus 98.7 7.5E-08 2.6E-12 85.3 10.7 99 143-244 3-101 (281)
141 3q49_B STIP1 homology and U bo 98.7 5.2E-07 1.8E-11 70.0 14.4 102 390-493 8-109 (137)
142 3gw4_A Uncharacterized protein 98.7 2.7E-07 9.1E-12 77.3 13.5 84 120-205 4-92 (203)
143 1na0_A Designed protein CTPR3; 98.7 1.4E-06 4.9E-11 66.0 16.6 113 357-472 10-122 (125)
144 4f3v_A ESX-1 secretion system 98.7 1.8E-06 6.2E-11 74.7 18.7 190 120-316 18-238 (282)
145 2vyi_A SGTA protein; chaperone 98.7 1.1E-06 3.7E-11 67.3 15.7 119 356-477 12-130 (131)
146 3sz7_A HSC70 cochaperone (SGT) 98.7 3.6E-07 1.2E-11 73.6 13.3 99 355-455 10-108 (164)
147 3upv_A Heat shock protein STI1 98.7 3.8E-07 1.3E-11 69.7 12.8 96 394-491 7-102 (126)
148 2vgx_A Chaperone SYCD; alterna 98.7 1.7E-07 5.7E-12 74.0 10.5 94 146-242 23-116 (148)
149 2vyi_A SGTA protein; chaperone 98.7 8.4E-07 2.9E-11 67.9 14.4 86 118-206 22-107 (131)
150 2lni_A Stress-induced-phosphop 98.6 5.9E-07 2E-11 69.2 13.2 98 144-244 16-113 (133)
151 3gyz_A Chaperone protein IPGC; 98.6 7.9E-08 2.7E-12 75.9 8.2 98 144-244 36-133 (151)
152 2e2e_A Formate-dependent nitri 98.6 2.9E-07 9.8E-12 75.3 11.8 122 118-244 20-144 (177)
153 2lni_A Stress-induced-phosphop 98.6 1.5E-06 5.1E-11 66.8 14.8 26 428-453 86-111 (133)
154 1p5q_A FKBP52, FK506-binding p 98.6 2E-06 6.7E-11 78.4 16.7 146 285-453 146-292 (336)
155 1hxi_A PEX5, peroxisome target 98.6 6.7E-07 2.3E-11 67.7 11.4 99 394-494 20-118 (121)
156 1elw_A TPR1-domain of HOP; HOP 98.6 1.1E-06 3.7E-11 65.9 12.6 98 356-455 4-101 (118)
157 2fbn_A 70 kDa peptidylprolyl i 98.6 1.5E-07 5.2E-12 78.6 8.4 130 358-489 40-185 (198)
158 4gcn_A Protein STI-1; structur 98.6 9E-07 3.1E-11 67.7 11.9 97 357-454 9-111 (127)
159 3upv_A Heat shock protein STI1 98.5 2.1E-06 7.2E-11 65.5 13.1 95 146-243 6-100 (126)
160 1elw_A TPR1-domain of HOP; HOP 98.5 6E-06 2E-10 61.7 15.1 86 118-206 14-99 (118)
161 2kck_A TPR repeat; tetratricop 98.5 1.5E-06 5.2E-11 64.4 11.3 101 392-494 7-110 (112)
162 4b4t_Q 26S proteasome regulato 98.5 1.2E-05 4.2E-10 76.1 20.2 197 257-453 11-243 (434)
163 3sz7_A HSC70 cochaperone (SGT) 98.5 3.1E-06 1.1E-10 68.0 13.7 97 144-243 11-107 (164)
164 2fbn_A 70 kDa peptidylprolyl i 98.5 3.6E-06 1.2E-10 70.1 14.5 124 109-235 39-176 (198)
165 4b4t_Q 26S proteasome regulato 98.5 7.7E-06 2.6E-10 77.4 18.6 201 114-314 10-244 (434)
166 2hr2_A Hypothetical protein; a 98.5 3.2E-06 1.1E-10 65.9 12.9 107 394-500 14-141 (159)
167 2xcb_A PCRH, regulatory protei 98.5 1.2E-06 4.2E-11 68.5 10.6 95 146-243 20-114 (142)
168 2kck_A TPR repeat; tetratricop 98.4 2.9E-06 1E-10 62.8 11.9 98 144-244 6-106 (112)
169 2dba_A Smooth muscle cell asso 98.4 4.2E-06 1.4E-10 65.7 13.3 98 355-455 27-128 (148)
170 4gcn_A Protein STI-1; structur 98.4 5.4E-06 1.8E-10 63.3 13.3 60 289-349 11-70 (127)
171 1elr_A TPR2A-domain of HOP; HO 98.4 5.1E-06 1.7E-10 63.5 12.8 112 357-471 5-122 (131)
172 2dba_A Smooth muscle cell asso 98.4 1.5E-05 5.2E-10 62.4 15.8 98 143-244 27-128 (148)
173 3q49_B STIP1 homology and U bo 98.4 8.2E-06 2.8E-10 63.1 13.9 99 142-243 7-105 (137)
174 3ro3_A PINS homolog, G-protein 98.4 2.2E-06 7.6E-11 68.4 10.4 135 358-492 11-160 (164)
175 2xev_A YBGF; tetratricopeptide 98.4 9.6E-06 3.3E-10 61.9 13.4 93 361-455 7-105 (129)
176 3rkv_A Putative peptidylprolyl 98.4 5.3E-06 1.8E-10 66.5 12.2 99 356-455 11-126 (162)
177 1hxi_A PEX5, peroxisome target 98.4 5.1E-06 1.7E-10 62.8 11.1 91 115-208 24-114 (121)
178 3k9i_A BH0479 protein; putativ 98.3 9.8E-07 3.3E-11 66.4 6.6 87 368-455 2-90 (117)
179 1wao_1 Serine/threonine protei 98.3 8.9E-06 3.1E-10 77.8 14.7 116 332-450 17-134 (477)
180 1elr_A TPR2A-domain of HOP; HO 98.3 8.8E-06 3E-10 62.1 12.0 27 358-384 81-107 (131)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.1E-05 3.8E-10 76.7 14.4 124 321-446 268-405 (457)
182 1wao_1 Serine/threonine protei 98.3 1.5E-06 5.2E-11 83.1 8.1 121 362-485 12-134 (477)
183 1dce_A Protein (RAB geranylger 98.3 5.2E-05 1.8E-09 73.9 18.9 160 336-499 44-230 (567)
184 3ro3_A PINS homolog, G-protein 98.2 9.8E-06 3.4E-10 64.5 11.4 97 358-454 51-157 (164)
185 2xev_A YBGF; tetratricopeptide 98.2 4.1E-05 1.4E-09 58.3 14.3 92 114-208 8-105 (129)
186 2if4_A ATFKBP42; FKBP-like, al 98.2 4.1E-06 1.4E-10 76.2 9.6 154 321-496 179-334 (338)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.4E-05 8.1E-10 74.5 15.1 122 109-235 269-405 (457)
188 3n71_A Histone lysine methyltr 98.2 1.1E-05 3.8E-10 76.7 12.4 126 117-242 318-462 (490)
189 3k9i_A BH0479 protein; putativ 98.2 2E-06 6.8E-11 64.6 5.2 87 121-208 3-90 (117)
190 1dce_A Protein (RAB geranylger 98.2 0.00015 5E-09 70.7 19.6 173 302-479 45-244 (567)
191 1ihg_A Cyclophilin 40; ppiase 98.2 2.6E-05 8.9E-10 71.8 13.6 123 109-234 224-360 (370)
192 1ihg_A Cyclophilin 40; ppiase 98.1 2.9E-05 9.9E-10 71.5 13.3 120 145-267 224-358 (370)
193 3n71_A Histone lysine methyltr 98.1 1.2E-05 4.1E-10 76.4 10.5 127 366-492 319-466 (490)
194 3rkv_A Putative peptidylprolyl 98.1 3.7E-05 1.3E-09 61.5 11.7 99 109-208 12-126 (162)
195 1klx_A Cysteine rich protein B 98.1 0.00014 4.8E-09 56.1 14.1 111 371-492 10-128 (138)
196 2if4_A ATFKBP42; FKBP-like, al 98.0 2.7E-05 9.1E-10 70.8 11.0 147 109-278 180-327 (338)
197 2kat_A Uncharacterized protein 98.0 4.6E-05 1.6E-09 56.8 10.1 80 374-455 3-82 (115)
198 2hr2_A Hypothetical protein; a 98.0 0.00015 5.1E-09 56.5 12.8 96 359-455 14-131 (159)
199 1klx_A Cysteine rich protein B 98.0 0.00041 1.4E-08 53.5 15.2 113 121-246 8-128 (138)
200 2l6j_A TPR repeat-containing p 97.9 1.9E-05 6.4E-10 58.3 6.1 94 390-486 3-103 (111)
201 2kat_A Uncharacterized protein 97.8 0.00011 3.7E-09 54.7 9.5 79 126-207 3-81 (115)
202 3ma5_A Tetratricopeptide repea 97.8 9.3E-05 3.2E-09 53.5 8.8 64 390-454 6-69 (100)
203 2l6j_A TPR repeat-containing p 97.8 2.3E-05 7.7E-10 57.9 5.4 63 144-207 4-66 (111)
204 1zu2_A Mitochondrial import re 97.8 3.6E-05 1.2E-09 59.9 6.1 110 366-492 12-142 (158)
205 1zu2_A Mitochondrial import re 97.8 8.6E-05 2.9E-09 57.8 8.1 99 119-223 13-132 (158)
206 1na3_A Designed protein CTPR2; 97.8 0.00045 1.5E-08 48.4 11.2 81 392-474 10-90 (91)
207 1na3_A Designed protein CTPR2; 97.7 0.00046 1.6E-08 48.4 10.5 79 145-226 10-88 (91)
208 3ma5_A Tetratricopeptide repea 97.6 0.00017 5.9E-09 52.0 7.5 65 142-207 5-69 (100)
209 3qww_A SET and MYND domain-con 97.4 0.00049 1.7E-08 64.2 9.3 88 404-491 311-412 (433)
210 3qww_A SET and MYND domain-con 97.4 0.0014 4.7E-08 61.2 11.4 26 217-242 384-409 (433)
211 3qwp_A SET and MYND domain-con 97.3 0.0014 4.9E-08 61.2 11.3 91 400-490 296-400 (429)
212 2kc7_A BFR218_protein; tetratr 97.3 0.00093 3.2E-08 47.8 7.7 87 397-493 6-93 (99)
213 3mkq_A Coatomer beta'-subunit; 97.3 0.0087 3E-07 61.5 17.4 153 261-453 610-763 (814)
214 3bee_A Putative YFRE protein; 97.3 0.0011 3.6E-08 46.8 7.3 66 389-455 4-72 (93)
215 3qwp_A SET and MYND domain-con 97.2 0.0015 5.2E-08 61.0 10.5 90 115-204 294-396 (429)
216 3ly7_A Transcriptional activat 97.2 0.011 3.7E-07 53.1 14.8 49 141-190 191-244 (372)
217 3ly7_A Transcriptional activat 97.2 0.014 4.7E-07 52.4 15.1 73 388-464 274-346 (372)
218 2kc7_A BFR218_protein; tetratr 97.2 0.0014 4.8E-08 46.8 7.4 66 432-498 6-72 (99)
219 3mkq_A Coatomer beta'-subunit; 97.0 0.11 3.9E-06 53.2 22.5 28 249-276 680-707 (814)
220 1pc2_A Mitochondria fission pr 97.0 0.0035 1.2E-07 48.2 8.2 81 372-454 14-99 (152)
221 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0079 2.7E-07 43.4 9.1 67 389-455 3-75 (104)
222 1wy6_A Hypothetical protein ST 96.9 0.076 2.6E-06 39.2 13.7 60 396-456 96-155 (172)
223 3bee_A Putative YFRE protein; 96.8 0.037 1.3E-06 38.8 11.8 67 141-208 3-72 (93)
224 3mkq_B Coatomer subunit alpha; 96.8 0.13 4.4E-06 40.6 15.7 128 330-487 14-141 (177)
225 3mkq_B Coatomer subunit alpha; 96.3 0.3 1E-05 38.5 18.0 103 152-276 13-115 (177)
226 2v5f_A Prolyl 4-hydroxylase su 96.2 0.064 2.2E-06 38.5 10.4 63 288-350 7-75 (104)
227 3lvg_A Clathrin heavy chain 1; 96.1 2E-05 6.7E-10 71.9 -10.9 174 109-299 84-276 (624)
228 4h7y_A Dual specificity protei 96.0 0.024 8.1E-07 42.9 7.2 102 355-458 12-126 (161)
229 1pc2_A Mitochondria fission pr 96.0 0.11 3.7E-06 39.9 11.0 83 336-420 13-100 (152)
230 3u64_A Protein TP_0956; tetrat 95.9 0.063 2.2E-06 46.1 10.1 108 372-489 179-297 (301)
231 1nzn_A CGI-135 protein, fissio 95.8 0.052 1.8E-06 40.0 8.3 82 372-454 17-102 (126)
232 3u64_A Protein TP_0956; tetrat 95.6 0.15 5.1E-06 43.9 11.5 110 336-453 178-296 (301)
233 4ady_A RPN2, 26S proteasome re 95.5 1.6 5.4E-05 44.5 20.0 119 297-418 535-656 (963)
234 4h7y_A Dual specificity protei 94.9 0.34 1.2E-05 36.7 10.1 52 370-422 74-125 (161)
235 1wy6_A Hypothetical protein ST 94.6 0.98 3.3E-05 33.5 15.2 138 118-279 17-154 (172)
236 3ffl_A Anaphase-promoting comp 94.6 0.53 1.8E-05 36.4 10.7 63 110-172 22-91 (167)
237 4fhn_B Nucleoporin NUP120; pro 94.3 2.9 0.0001 44.5 19.5 147 184-339 817-989 (1139)
238 1nzn_A CGI-135 protein, fissio 94.2 0.52 1.8E-05 34.7 9.6 83 123-208 16-103 (126)
239 2ff4_A Probable regulatory pro 94.1 0.67 2.3E-05 42.5 12.5 58 147-205 174-231 (388)
240 4b4t_P 26S proteasome regulato 94.1 3.8 0.00013 38.2 23.8 192 121-313 29-245 (445)
241 4gns_B Protein CSD3, chitin bi 94.0 1.1 3.7E-05 44.7 14.3 54 433-488 344-398 (754)
242 4ady_A RPN2, 26S proteasome re 93.7 7.1 0.00024 39.9 29.0 257 225-488 384-656 (963)
243 2ff4_A Probable regulatory pro 93.4 1.5 5.3E-05 40.1 13.7 77 394-471 174-255 (388)
244 4gns_B Protein CSD3, chitin bi 93.4 0.6 2.1E-05 46.5 11.4 52 400-452 346-397 (754)
245 4fhn_B Nucleoporin NUP120; pro 93.3 3.2 0.00011 44.2 17.7 131 358-490 901-1050(1139)
246 3lvg_A Clathrin heavy chain 1; 93.3 3.7E-06 1.3E-10 76.5 -23.0 222 179-438 54-275 (624)
247 3o48_A Mitochondria fission 1 92.1 1.5 5.1E-05 32.5 9.1 67 388-454 37-106 (134)
248 1y8m_A FIS1; mitochondria, unk 91.7 3.3 0.00011 31.1 11.0 68 388-455 36-106 (144)
249 1v54_E Cytochrome C oxidase po 91.6 2.4 8.2E-05 29.5 9.0 48 372-419 26-73 (109)
250 1v54_E Cytochrome C oxidase po 91.3 1.9 6.5E-05 30.0 8.3 63 159-223 25-87 (109)
251 1qsa_A Protein (soluble lytic 90.0 15 0.00051 35.8 31.9 308 91-414 55-436 (618)
252 4b4t_P 26S proteasome regulato 89.8 13 0.00044 34.7 22.2 95 183-277 141-245 (445)
253 1zbp_A Hypothetical protein VP 89.4 3.3 0.00011 35.0 10.1 116 115-244 4-129 (273)
254 1qsa_A Protein (soluble lytic 89.3 17 0.00058 35.5 28.0 315 116-454 14-347 (618)
255 2y69_E Cytochrome C oxidase su 89.0 4.3 0.00015 30.0 9.0 42 414-455 76-117 (152)
256 3ffl_A Anaphase-promoting comp 88.6 5 0.00017 31.1 9.8 28 460-487 121-148 (167)
257 2wpv_A GET4, UPF0363 protein Y 88.4 12 0.00042 32.7 16.8 22 470-491 197-218 (312)
258 2y69_E Cytochrome C oxidase su 88.2 3.8 0.00013 30.3 8.3 63 159-223 68-130 (152)
259 1zbp_A Hypothetical protein VP 88.0 4.3 0.00015 34.4 9.8 122 365-499 6-138 (273)
260 3o48_A Mitochondria fission 1 87.0 7.6 0.00026 28.8 10.5 69 352-420 36-107 (134)
261 2p58_C Putative type III secre 85.1 7.5 0.00026 27.0 8.0 51 259-316 49-99 (116)
262 2wpv_A GET4, UPF0363 protein Y 84.9 19 0.00066 31.4 21.0 84 153-238 62-157 (312)
263 2uwj_G Type III export protein 83.7 7.3 0.00025 27.0 7.4 78 230-316 21-98 (115)
264 3txn_A 26S proteasome regulato 82.8 28 0.00095 31.7 24.9 92 221-312 105-207 (394)
265 4b4t_R RPN7, 26S proteasome re 82.3 9.1 0.00031 35.5 10.5 58 147-204 134-193 (429)
266 3bbn_U Ribosomal protein S21; 82.0 0.27 9.4E-06 38.0 0.0 27 1-27 3-29 (190)
267 4b4t_R RPN7, 26S proteasome re 81.0 21 0.00071 33.1 12.4 99 252-350 133-237 (429)
268 1y8m_A FIS1; mitochondria, unk 80.1 17 0.00057 27.3 12.1 68 353-420 36-106 (144)
269 3esl_A Checkpoint serine/threo 80.0 7.8 0.00027 31.1 7.7 57 404-460 92-149 (202)
270 3esl_A Checkpoint serine/threo 79.2 23 0.00079 28.5 10.4 57 369-425 92-149 (202)
271 2uwj_G Type III export protein 77.7 15 0.00051 25.5 8.1 79 121-208 19-97 (115)
272 2d2s_A Exocyst complex compone 77.4 17 0.00059 30.2 9.5 102 101-205 11-117 (235)
273 2p58_C Putative type III secre 77.3 16 0.00053 25.4 9.1 79 121-208 20-98 (116)
274 3txn_A 26S proteasome regulato 74.9 49 0.0017 30.0 24.7 169 179-348 19-208 (394)
275 3eiq_C Programmed cell death p 74.4 48 0.0016 29.6 12.9 64 289-353 220-285 (358)
276 3lpz_A GET4 (YOR164C homolog); 72.8 50 0.0017 29.1 22.2 83 154-238 65-159 (336)
277 4a1g_A Mitotic checkpoint seri 70.6 15 0.00052 28.0 6.8 50 410-459 84-134 (152)
278 3ltm_A Alpha-REP4; protein eng 66.9 48 0.0016 26.6 19.2 152 143-313 32-183 (211)
279 2wvi_A Mitotic checkpoint seri 66.8 28 0.00095 27.0 7.7 74 387-463 59-133 (164)
280 4b4t_S RPN3, 26S proteasome re 65.7 33 0.0011 32.3 9.4 66 179-244 231-299 (523)
281 3ltj_A Alpharep-4; protein eng 65.1 50 0.0017 26.2 18.8 111 177-301 57-167 (201)
282 3lpz_A GET4 (YOR164C homolog); 62.4 83 0.0028 27.7 26.6 18 401-418 197-214 (336)
283 4a1g_A Mitotic checkpoint seri 60.5 54 0.0018 25.0 9.4 50 375-424 84-134 (152)
284 2d2s_A Exocyst complex compone 59.6 75 0.0026 26.4 10.0 22 362-383 24-45 (235)
285 2r9g_A AAA ATPase, central reg 58.6 69 0.0024 25.6 9.8 55 369-424 27-86 (204)
286 1bpo_A Protein (clathrin); cla 57.8 1.2E+02 0.0041 28.1 11.7 123 143-276 360-482 (494)
287 3bge_A Predicted ATPase; struc 55.0 75 0.0026 25.3 8.2 21 370-390 21-41 (201)
288 2wvi_A Mitotic checkpoint seri 54.6 72 0.0025 24.6 9.7 55 373-427 77-132 (164)
289 1oai_A Nuclear RNA export fact 53.8 9.6 0.00033 23.5 2.5 25 121-145 33-57 (59)
290 2zu6_B Programmed cell death p 53.4 1.1E+02 0.0038 26.6 10.1 64 289-353 169-234 (307)
291 2qx5_A Nucleoporin NIC96; mRNA 53.4 1.7E+02 0.006 28.7 15.7 23 185-207 158-180 (661)
292 2nsz_A Programmed cell death p 52.5 66 0.0023 23.6 8.1 68 109-178 8-77 (129)
293 3ctd_A Putative ATPase, AAA fa 51.4 95 0.0032 25.1 8.9 34 370-403 49-82 (213)
294 2ion_A PDCD4, programmed cell 50.7 53 0.0018 25.0 6.8 67 109-177 10-78 (152)
295 4gq2_M Nucleoporin NUP120; bet 50.2 1.6E+02 0.0054 30.6 12.4 108 185-300 816-950 (950)
296 2xig_A Ferric uptake regulatio 49.8 82 0.0028 23.8 8.4 62 345-407 16-77 (150)
297 2fe3_A Peroxide operon regulat 48.6 83 0.0028 23.6 7.9 60 346-406 12-71 (145)
298 2fe3_A Peroxide operon regulat 47.1 72 0.0025 23.9 7.1 42 434-475 29-70 (145)
299 2f6m_A Suppressor protein STP2 46.4 39 0.0013 21.2 4.3 46 146-192 4-49 (65)
300 3ltm_A Alpha-REP4; protein eng 44.7 1.2E+02 0.004 24.2 19.3 142 177-336 31-172 (211)
301 2xig_A Ferric uptake regulatio 44.4 73 0.0025 24.1 6.8 43 433-475 33-75 (150)
302 1mzb_A Ferric uptake regulatio 44.0 88 0.003 23.1 7.1 60 347-407 9-69 (136)
303 3eyy_A Putative iron uptake re 43.2 58 0.002 24.5 6.0 34 442-475 33-66 (145)
304 2nsz_A Programmed cell death p 42.6 98 0.0034 22.7 7.7 63 183-247 11-75 (129)
305 4aez_C MAD3, mitotic spindle c 42.0 1.2E+02 0.0041 24.8 7.9 106 105-214 73-184 (223)
306 3eyy_A Putative iron uptake re 42.0 72 0.0024 24.0 6.4 59 346-406 9-67 (145)
307 3pvs_A Replication-associated 41.3 2.2E+02 0.0075 26.3 15.5 37 369-405 268-304 (447)
308 2w57_A Ferric uptake regulatio 41.2 92 0.0032 23.5 6.9 61 346-407 7-68 (150)
309 2ion_A PDCD4, programmed cell 41.2 75 0.0026 24.2 6.3 24 183-206 13-36 (152)
310 4ets_A Ferric uptake regulatio 40.5 1.1E+02 0.0039 23.4 7.4 61 346-407 23-85 (162)
311 1mzb_A Ferric uptake regulatio 40.4 78 0.0027 23.4 6.3 59 382-441 9-68 (136)
312 2yru_A Steroid receptor RNA ac 38.5 73 0.0025 23.0 5.5 42 414-455 49-90 (118)
313 3eiq_C Programmed cell death p 37.1 2.3E+02 0.0077 25.3 13.0 66 324-390 220-287 (358)
314 2w57_A Ferric uptake regulatio 37.0 81 0.0028 23.8 6.0 34 407-440 33-66 (150)
315 1zl8_A LIN-7; heterodimer, alp 37.0 63 0.0022 18.9 4.6 21 121-141 6-26 (53)
316 4ets_A Ferric uptake regulatio 35.3 1.1E+02 0.0036 23.6 6.5 59 383-442 25-85 (162)
317 2o03_A Probable zinc uptake re 35.2 78 0.0027 23.2 5.5 47 361-407 15-61 (131)
318 1rw2_A ATP-dependent DNA helic 33.2 19 0.00065 27.5 1.8 68 87-154 33-104 (152)
319 3mwm_A ZUR, putative metal upt 32.9 71 0.0024 23.8 5.0 47 361-407 18-64 (139)
320 4aez_C MAD3, mitotic spindle c 32.4 2.1E+02 0.0071 23.4 8.3 33 287-319 151-183 (223)
321 4b4t_S RPN3, 26S proteasome re 32.3 3.3E+02 0.011 25.8 11.7 64 322-385 232-299 (523)
322 1ug3_A EIF4GI, eukaryotic prot 31.8 2.7E+02 0.0091 24.5 10.2 65 109-175 12-77 (339)
323 1q2z_A ATP-dependent DNA helic 31.1 15 0.00052 26.7 0.9 52 121-175 40-94 (120)
324 3bu8_A Telomeric repeat-bindin 30.4 2.2E+02 0.0075 23.1 7.7 19 259-277 123-141 (235)
325 2crb_A Nuclear receptor bindin 30.3 1E+02 0.0035 20.9 4.6 24 429-452 18-41 (97)
326 2ijq_A Hypothetical protein; s 30.2 1.9E+02 0.0064 22.2 8.0 14 405-418 46-59 (161)
327 3kae_A CDC27, possible protein 30.0 2E+02 0.0068 22.5 7.8 58 435-492 71-145 (242)
328 2o03_A Probable zinc uptake re 29.9 76 0.0026 23.2 4.7 43 433-475 17-59 (131)
329 4gq2_M Nucleoporin NUP120; bet 29.4 5E+02 0.017 26.9 12.2 29 463-491 899-927 (950)
330 4fke_A Aminopeptidase N; zinc 29.2 4.9E+02 0.017 26.8 15.7 89 185-278 692-786 (909)
331 1k1a_A B-cell lymphoma 3-encod 27.5 1.3E+02 0.0044 24.4 6.4 21 118-138 16-36 (241)
332 2fu4_A Ferric uptake regulatio 27.1 1.3E+02 0.0045 19.5 6.7 34 372-405 33-66 (83)
333 2b7e_A PRE-mRNA processing pro 26.8 33 0.0011 21.1 1.7 28 162-189 4-31 (59)
334 3mwm_A ZUR, putative metal upt 26.8 67 0.0023 23.9 3.9 34 442-475 29-62 (139)
335 4b4t_O 26S proteasome regulato 26.2 3.6E+02 0.012 24.3 10.7 20 363-382 83-102 (393)
336 1bpo_A Protein (clathrin); cla 25.6 4.1E+02 0.014 24.7 12.7 111 158-274 343-453 (494)
337 2qx5_A Nucleoporin NIC96; mRNA 25.2 5E+02 0.017 25.5 21.8 28 460-487 532-564 (661)
338 1wdy_A 2-5A-dependent ribonucl 24.8 1.8E+02 0.0062 24.1 7.0 7 155-161 13-19 (285)
339 2zu6_B Programmed cell death p 24.3 3.5E+02 0.012 23.4 10.8 26 182-207 6-31 (307)
340 1wdy_A 2-5A-dependent ribonucl 24.1 1.1E+02 0.0036 25.6 5.4 20 185-204 8-27 (285)
341 1ug3_A EIF4GI, eukaryotic prot 23.8 3.6E+02 0.012 23.7 8.7 24 253-276 14-37 (339)
342 3hra_A Ankyrin repeat family p 23.5 1.1E+02 0.0039 23.8 5.2 16 189-204 12-27 (201)
343 2cos_A Serine/threonine protei 23.4 65 0.0022 19.3 2.4 11 477-487 38-48 (54)
344 2f6m_A Suppressor protein STP2 23.2 1.4E+02 0.0046 18.8 4.0 45 429-474 5-49 (65)
345 2ijq_A Hypothetical protein; s 22.9 2.6E+02 0.0089 21.5 8.5 22 368-389 44-65 (161)
346 3t5v_B Nuclear mRNA export pro 22.9 2.2E+02 0.0074 26.5 7.2 61 430-490 180-249 (455)
347 3ygs_P Procaspase 9; apoptosis 22.8 1.3E+02 0.0046 20.6 4.5 37 158-198 51-87 (97)
348 3jxi_A Vanilloid receptor-rela 22.3 36 0.0012 28.4 1.8 22 469-490 230-251 (260)
349 2p22_A Suppressor protein STP2 22.1 1.2E+02 0.0041 23.7 4.4 52 144-196 111-162 (174)
350 3bu8_A Telomeric repeat-bindin 21.0 3.4E+02 0.012 22.1 11.9 47 160-207 88-142 (235)
351 2rpa_A Katanin P60 ATPase-cont 20.8 1.1E+02 0.0039 20.0 3.5 25 466-490 17-41 (78)
352 1oyz_A Hypothetical protein YI 20.6 3.7E+02 0.013 22.3 25.4 175 143-336 36-221 (280)
353 3f3f_C Nucleoporin NUP85; stru 20.6 3.9E+02 0.013 25.6 8.4 53 215-269 516-568 (570)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-35 Score=293.53 Aligned_cols=246 Identities=11% Similarity=-0.020 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--------------------------------CCCCHHHHHHHHHH
Q 010740 248 PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT--------------------------------CKPDVWTMNTILSV 295 (502)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~ 295 (502)
++..+++.++..|.+.|++++|.++|+++++... .+.+..+++.++..
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 4455555555666666666666666665544321 12345566666777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHH
Q 010740 296 FANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375 (502)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (502)
|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.+.. +..+|..++.+|.+.|++++|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766543 445666777777777777777777777777665443 666777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--hHHHHHHHHHHHHcCCHHHHHHHH
Q 010740 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL----QIAEN--VSFYNAVISACIKADDLMEMERVY 449 (502)
Q Consensus 376 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 449 (502)
.++|+++.+.. +.+..+|..++..|.+.|++++|.++++.+.+. +..|+ ..+|..++.+|.+.|++++|.++|
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777776653 335667777777777777777777777776665 44555 567777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccc
Q 010740 450 KRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH 497 (502)
Q Consensus 450 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 497 (502)
+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++++..|++...
T Consensus 540 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 540 NQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 7777654 2366777777777777777777777777777776665543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-34 Score=283.55 Aligned_cols=353 Identities=10% Similarity=-0.058 Sum_probs=283.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------C
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE---------------G 174 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~ 174 (502)
.+..+...+...|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+++... +
T Consensus 119 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (597)
T 2xpi_A 119 DAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccc
Confidence 3445667777788888888888776542 456667777777777777777777777642211 1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCC--------------------------------------------
Q 010740 175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPN-------------------------------------------- 210 (502)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------------------------------------------- 210 (502)
.+.+..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence 122466777777777777777777777766643210
Q ss_pred -------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------
Q 010740 211 -------------------------CQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV------------------- 246 (502)
Q Consensus 211 -------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------------------- 246 (502)
.+++..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 025667777778888888888888888887765321
Q ss_pred --------------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740 247 --------------TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKF 312 (502)
Q Consensus 247 --------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 312 (502)
+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2367788999999999999999999999997752 346889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCC
Q 010740 313 RNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE----GMK 388 (502)
Q Consensus 313 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~ 388 (502)
.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 9865 668899999999999999999999999999987655 8899999999999999999999999999876 667
Q ss_pred CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010740 389 AD--TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSI 466 (502)
Q Consensus 389 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 466 (502)
|+ ..+|..++.+|.+.|++++|.++++.+.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+.... +...+..
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~ 589 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDL 589 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHH
Confidence 87 7899999999999999999999999999875 668999999999999999999999999999986432 5677777
Q ss_pred HHHHH
Q 010740 467 MTEAY 471 (502)
Q Consensus 467 l~~~~ 471 (502)
+..+|
T Consensus 590 l~~~~ 594 (597)
T 2xpi_A 590 LKRAL 594 (597)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 76655
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.8e-30 Score=240.60 Aligned_cols=370 Identities=13% Similarity=0.096 Sum_probs=327.8
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI 195 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 195 (502)
..+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45667899999999999988763 5567788889999999999999999999998875 67889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010740 196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG 275 (502)
Q Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (502)
++|++.|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998752 556778999999999999999999999999987433 567788889999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 010740 276 MLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT 355 (502)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 355 (502)
+++.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+..+.... +
T Consensus 161 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 98753 3467899999999999999999999999999865 566788999999999999999999999999887654 7
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435 (502)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (502)
..++..+..++...|++++|.+.|+++.+.+ +.+..++..+..++...|++++|.+.++.+.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 8899999999999999999999999999864 3357789999999999999999999999999874 6788999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
+.+.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|++.++++++..|.....|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 999999999999999999863 33688999999999999999999999999999877655443
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-31 Score=256.54 Aligned_cols=188 Identities=14% Similarity=0.183 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---------cHHHHHHHHHHHHHcCCCCChH
Q 010740 287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKR---------MYDKMSSVMEYMRKLQFPWTSS 357 (502)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~ 357 (502)
..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3466667777777777777777777777777777777777777776543 3677888888888888888888
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (502)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740 438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE 474 (502)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 474 (502)
+.|++++|.++|++|++.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888877753
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.9e-30 Score=248.54 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCCCCHH
Q 010740 217 TYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM---------FDQMERVLSGMLESATCKPDVW 287 (502)
Q Consensus 217 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 287 (502)
.++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. ++.|.++|++|.+ .|+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHH
Confidence 4566666666666666666666666666666666666666666665543 3445555555532 34555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 010740 288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS 367 (502)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (502)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740 368 DMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403 (502)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 403 (502)
+.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555554443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.5e-27 Score=220.16 Aligned_cols=355 Identities=13% Similarity=0.027 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
..+..+...+...|++++|..+++.+.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+..+|..+..+
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 334444556778899999999999988764 6788899999999999999999999999999874 4567789999999
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 268 (502)
+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+... .+..+|..+...+...|++++
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998753 45566788899999999999999999999998743 367899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMR 348 (502)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 348 (502)
|...|+++++.. +.+...+..+...+...|++++|...|++..... +.+..++..+...|.+.|++++|.+.|+.+.
T Consensus 188 A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 188 AIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998753 3467789999999999999999999999998754 5568899999999999999999999999999
Q ss_pred HcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740 349 KLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF 428 (502)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (502)
+.... +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..+
T Consensus 265 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 341 (388)
T 1w3b_A 265 ELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA 341 (388)
T ss_dssp HTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 97655 77899999999999999999999999999874 5578899999999999999999999999998863 567889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476 (502)
Q Consensus 429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 476 (502)
+..+..+|.+.|++++|.+.|+++.+... -+...|..+...+...|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999998532 257788888887776653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-25 Score=218.31 Aligned_cols=379 Identities=8% Similarity=0.010 Sum_probs=319.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
..+......+...|++++|+..|+.+.+. .|+..+|..+..++.+.|++++|...|+++.+.+ +.+..+|..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 44555667788899999999999999886 4689999999999999999999999999999875 5678899999999
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCC---------------------------------------------------------
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNC--------------------------------------------------------- 211 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~--------------------------------------------------------- 211 (502)
+...|++++|+..|+++......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998764210
Q ss_pred --------------------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHH
Q 010740 212 --------------------QPDVYTYSTLIKACVD---AMRFELIETLYQDMDE-----RSV--------TPNTVTQNI 255 (502)
Q Consensus 212 --------------------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~ 255 (502)
+.+...+......+.. .|++++|..+++++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 0013333334444443 7999999999999987 311 223567888
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 010740 256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKR 335 (502)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 335 (502)
+...+...|++++|...++++++.. |+...+..+..++...|++++|...++++.... +.+...+..+...|...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8999999999999999999998763 448888999999999999999999999998764 567788999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010740 336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR 415 (502)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 415 (502)
++++|...++.+.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987665 77899999999999999999999999998763 3356788999999999999999999999
Q ss_pred HHHhcCCC-CC----hHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 416 LASKLQIA-EN----VSFYNAVISACIK---ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 416 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
.+.+.... ++ ...+..+..++.. .|++++|...|+++.+... .+..++..+..+|.+.|++++|.+.++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88775311 11 3488999999999 9999999999999998642 36888999999999999999999999999
Q ss_pred HHhhhhccccc
Q 010740 488 LQMLLEASGHW 498 (502)
Q Consensus 488 ~~~~~~~~~~~ 498 (502)
++..+.+...|
T Consensus 476 ~~~~~~~~~~~ 486 (514)
T 2gw1_A 476 ADLARTMEEKL 486 (514)
T ss_dssp HHHCSSHHHHH
T ss_pred HHhccccHHHH
Confidence 99988766544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.3e-24 Score=207.38 Aligned_cols=300 Identities=11% Similarity=0.061 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
..+......+...|++++|+.+|+.+.+.. +.+..+|..+..++...|++++|...|+++.+.+ +.+..++..+..+
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 444555566666777777777777766542 4456677777777777777777777777777664 4456667777777
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDV---YTYSTLIKA------------CVDAMRFELIETLYQDMDERSVTPNTVTQ 253 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~------------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 253 (502)
|...|++++|++.|+++.+.. +.+. ..+..+... +...|++++|...|+++.+... .+..++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 777777777777777776532 2333 455555333 5556666666666666655422 255556
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------
Q 010740 254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNIL------ 327 (502)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 327 (502)
..+..+|.+.|++++|.++|+++++.. +.+..++..+..+|...|++++|+..|+++.... +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 666666666666666666666665432 2345556666666666666666666666665432 2223333322
Q ss_pred ------HHHHHccCcHHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740 328 ------IGAYGKKRMYDKMSSVMEYMRKLQFPWT----SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397 (502)
Q Consensus 328 ------~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 397 (502)
...|.+.|++++|...|+.+.+.... + ...|..+..++.+.|++++|...++++.+.. +.+...+..+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 34444445555555555444443221 1 1234444444444445555544444444331 1233444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 010740 398 INGYANAGLFHKVISSVRLASK 419 (502)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~ 419 (502)
..+|...|++++|...++.+.+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.9e-23 Score=200.94 Aligned_cols=342 Identities=12% Similarity=0.056 Sum_probs=289.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST 220 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+.+...+..++..+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHH
Confidence 5567799999999999999999999999999874 5679999999999999999999999999998853 567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCCC
Q 010740 221 LIKACVDAMRFELIETLYQDMDERSVTPNT---VTQNIV------------LGGYGKAGMFDQMERVLSGMLESATCKPD 285 (502)
Q Consensus 221 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 285 (502)
+..+|...|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|.+.|+++++.. +.+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~ 176 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWD 176 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 999999999999999999999987432 33 555555 444889999999999999998753 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHH---
Q 010740 286 VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV--- 362 (502)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 362 (502)
...+..+..+|...|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+.+.+.... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 8889999999999999999999999998754 667889999999999999999999999999987554 55555555
Q ss_pred ---------HHHHHhcCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740 363 ---------IEAFSDMGDAKHMEYTFEQMHAEGMKAD-----TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF 428 (502)
Q Consensus 363 ---------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 428 (502)
+..+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++.+.+.. +.+..+
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~ 331 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHH
Confidence 88899999999999999999985 454 4578889999999999999999999998864 567899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------------HHHHhcC-----CcHHHHHHHHH-HHHh
Q 010740 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT------------EAYAKEG-----MNDKVYALEQE-KLQM 490 (502)
Q Consensus 429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~ 490 (502)
|..+..+|...|++++|...|+++.+.... +...+..+. ..|...| +.+++.+.+++ +++.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999985322 566777666 3355555 66788888886 5555
Q ss_pred hhhc
Q 010740 491 LLEA 494 (502)
Q Consensus 491 ~~~~ 494 (502)
.|+.
T Consensus 411 ~pd~ 414 (450)
T 2y4t_A 411 HPDN 414 (450)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 5543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.7e-23 Score=203.73 Aligned_cols=378 Identities=9% Similarity=0.030 Sum_probs=303.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA 187 (502)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (502)
...+......+...|++++|++.|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 3556667778889999999999999998874 6688899999999999999999999999999876 567889999999
Q ss_pred HHHhCCCHHHHHHHHHHhhcCCCC-----------------------------------CCCHH----------------
Q 010740 188 AYCRNSLIDEAFVTLNQMKTLPNC-----------------------------------QPDVY---------------- 216 (502)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~---------------- 216 (502)
++...|++++|+..|+.+...+.. .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999999644221100 01110
Q ss_pred --------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhccCChH
Q 010740 217 --------------TYSTLIKACV--------DAMRFELIETLYQDMDERSVTPN-------TVTQNIVLGGYGKAGMFD 267 (502)
Q Consensus 217 --------------~~~~ll~~~~--------~~~~~~~a~~~~~~~~~~g~~~~-------~~~~~~l~~~~~~~g~~~ 267 (502)
....+...+. ..+++++|..+++++.+.... + ..++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 124788999999998876433 3 235667778888999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 010740 268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYM 347 (502)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (502)
+|.+.++.+++. .|+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+
T Consensus 261 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 DAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999875 5668889999999999999999999999998865 567889999999999999999999999999
Q ss_pred HHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----C
Q 010740 348 RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ-----I 422 (502)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~ 422 (502)
.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.. .
T Consensus 337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 988655 67889999999999999999999999999864 3456788899999999999999999999887652 1
Q ss_pred CCChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 423 AENVSFYNAVISACIKA----------DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 423 ~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
......+..+..++... |++++|...|+++.+... .+...+..+..+|.+.|++++|.+.++++++..+
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 11223345556777888 999999999999998643 3678999999999999999999999999999876
Q ss_pred hccc
Q 010740 493 EASG 496 (502)
Q Consensus 493 ~~~~ 496 (502)
....
T Consensus 494 ~~~~ 497 (537)
T 3fp2_A 494 TMDE 497 (537)
T ss_dssp -CHH
T ss_pred CcHH
Confidence 6543
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-22 Score=198.18 Aligned_cols=344 Identities=9% Similarity=-0.048 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
...+..+...+.+.|++++|...|+++.+.+ |+..+|..+..++...|++++|++.++++.+.. +.+..+|..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 4577888899999999999999999999885 799999999999999999999999999998753 667889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-------------------------------------------------------
Q 010740 224 ACVDAMRFELIETLYQDMDERSVTP------------------------------------------------------- 248 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~g~~~------------------------------------------------------- 248 (502)
++...|++++|...|+++...+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999987764210
Q ss_pred -----------------------CHHHHHHHHHHHh---ccCChHHHHHHHHHHHH-----cCCC-------CCCHHHHH
Q 010740 249 -----------------------NTVTQNIVLGGYG---KAGMFDQMERVLSGMLE-----SATC-------KPDVWTMN 290 (502)
Q Consensus 249 -----------------------~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~ 290 (502)
+...+......+. +.|++++|...|+++++ .... ..+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1233333333344 38999999999999977 2111 12356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 010740 291 TILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG 370 (502)
Q Consensus 291 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (502)
.+...+...|++++|...|+++.+.. |+...+..+..+|...|++++|...++.+.+.... +...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 88999999999999999999998865 33888999999999999999999999999987654 7788999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740 371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK 450 (502)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 450 (502)
++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999864 3356788899999999999999999999998864 5567889999999999999999999999
Q ss_pred HHHHCCCC-CC----HHHHHHHHHHHHh---cCCcHHHHHHHHHHHHhhhhccc
Q 010740 451 RMKEKHCR-PD----SETFSIMTEAYAK---EGMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 451 ~~~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
++.+.... ++ ...|..+...|.. .|++++|.+.++++++..+....
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 450 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence 99875322 11 3488999999999 99999999999999998765543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.1e-20 Score=175.66 Aligned_cols=327 Identities=12% Similarity=0.031 Sum_probs=192.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
.+......+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 34444555566666666666666665542 4455566666666666666666666666666553 33556666666666
Q ss_pred HhCCCHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010740 190 CRNSLIDEAFVTLNQMKTLPNCQP----DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265 (502)
Q Consensus 190 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 265 (502)
...|++++|+..|+++.+. .| +...+..+..... ...+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 6666666666666666653 23 2223332211100 0112223455666666
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 010740 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVME 345 (502)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (502)
+++|.+.++++++.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|...|++++|...++
T Consensus 136 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 136 YTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666665542 2345566666666666666666666666666543 4455666666666666666666666666
Q ss_pred HHHHcCCCCChHHHH------------HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHH
Q 010740 346 YMRKLQFPWTSSTYN------------NVIEAFSDMGDAKHMEYTFEQMHAEGMKADT----KTFCCLINGYANAGLFHK 409 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 409 (502)
...+.... +...+. .+...+...|++++|...++++.+.... +. ..+..+..++...|++++
T Consensus 213 ~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 66655433 333222 2255566777777777777777664321 22 224445667777777777
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740 410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472 (502)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 472 (502)
|...++.+.+.. +.+..++..+..++...|++++|.+.|+++.+.... +...+..+..+..
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 777777776653 446667777777777777777777777777765321 3445555554443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=8.7e-21 Score=176.40 Aligned_cols=324 Identities=10% Similarity=0.037 Sum_probs=246.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHH
Confidence 34566677777777777777777777777654 4556777777777777777777777777776642 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740 223 KACVDAMRFELIETLYQDMDERSVT--PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (502)
.++...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHcc
Confidence 7777777777777777777665220 12222222221110 112334567889999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 010740 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380 (502)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 380 (502)
++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...|+
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998865 667888999999999999999999999999987654 88999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----HHHHHHHHHHHHcCCHHH
Q 010740 381 QMHAEGMKADTKTFC------------CLINGYANAGLFHKVISSVRLASKLQIAENV----SFYNAVISACIKADDLME 444 (502)
Q Consensus 381 ~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 444 (502)
+..+.. +.+...+. .+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHH
Confidence 998763 22333333 23667889999999999999998864 3333 335567889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740 445 MERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 445 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
|...+++..+.. +.+..+|..+..+|.+.|++++|.+.++++++..|++...+
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 999999999863 23788999999999999999999999999999988765543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.9e-20 Score=184.30 Aligned_cols=345 Identities=9% Similarity=0.015 Sum_probs=273.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
...|..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 4577888999999999999999999999875 5688999999999999999999999999998853 667889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC------------------------------------CCCHH----------------
Q 010740 224 ACVDAMRFELIETLYQDMDERSV------------------------------------TPNTV---------------- 251 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~g~------------------------------------~~~~~---------------- 251 (502)
++...|++++|...|+.+....- .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999964421110 01111
Q ss_pred --------------HHHHHHHHHhc--------cCChHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 010740 252 --------------TQNIVLGGYGK--------AGMFDQMERVLSGMLESATCKPD-----VWTMNTILSVFANKGQVDM 304 (502)
Q Consensus 252 --------------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~ 304 (502)
....+...+.. .|++++|..+++++++...-.++ ..++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11222222221 24788999999998764211111 2356777788889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740 305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA 384 (502)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 384 (502)
|...|+++.+. .|+...+..+...|...|++++|...+..+.+.... +..++..+...+...|++++|...|+++.+
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999875 455888899999999999999999999999887655 788999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CC
Q 010740 385 EGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC-----RP 459 (502)
Q Consensus 385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-----~p 459 (502)
.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|+++.+... ..
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 64 2346788889999999999999999999998874 56678899999999999999999999999876421 11
Q ss_pred CHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHHhhhhccc
Q 010740 460 DSETFSIMTEAYAKE----------GMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 460 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
....+..+..++.+. |++++|+..++++++..|....
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 233355556777887 9999999999999998776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=5.4e-20 Score=168.93 Aligned_cols=289 Identities=12% Similarity=-0.021 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740 180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259 (502)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 259 (502)
..+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+... .+...+..+...
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence 334444444444455555555555444321 22333344444444455555555555555444321 134444455555
Q ss_pred HhccC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHH
Q 010740 260 YGKAG-MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD 338 (502)
Q Consensus 260 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 338 (502)
+...| ++++|.+.|++.++.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 55555 5555555555554321 2233445555555555555555555555555432 223344444555555566666
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChHHH
Q 010740 339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG--------MKADTKTFCCLINGYANAGLFHKV 410 (502)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a 410 (502)
+|.+.++.+.+.... +...+..+...+...|++++|...++++.+.. ......++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 666666655554433 45566666666666666666666666665431 122345677777777778888888
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCc
Q 010740 411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY-AKEGMN 477 (502)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~ 477 (502)
...++.+.+.. +.+..++..+..++...|++++|.+.|+++.+... .+...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCch
Confidence 88877777654 44667777788888888888888888888776532 2566777777766 345544
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.2e-17 Score=160.10 Aligned_cols=350 Identities=12% Similarity=-0.010 Sum_probs=299.9
Q ss_pred HHHHHHHHHHHh----hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHH
Q 010740 109 NTVAETFSDHVL----KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGK----SGQPELARKVFNEMVEEGIEPTPE 180 (502)
Q Consensus 109 ~~~~~~l~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 180 (502)
.....+-..+.. .+++++|+..|+...+.+ +...+..|...|.. .+++++|.+.|++..+.| +..
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 334444445555 789999999999998875 67889999999998 999999999999999865 677
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 010740 181 LYTALLAAYCR----NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVTPNTVT 252 (502)
Q Consensus 181 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 252 (502)
.+..|...|.. .+++++|+++|++..+. -+...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 88889999988 88999999999999874 367788888888887 789999999999998875 6788
Q ss_pred HHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740 253 QNIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTF 324 (502)
Q Consensus 253 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 324 (502)
+..+...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888888887 89999999999999764 367788888888886 899999999999998754 45667
Q ss_pred HHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCCCHHHHH
Q 010740 325 NILIGAYGK----KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM-----GDAKHMEYTFEQMHAEGMKADTKTFC 395 (502)
Q Consensus 325 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~ 395 (502)
..+...|.. .++.++|...|+...+.+ +...+..+...|... ++.++|...|++..+.| +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 777777777 899999999999998764 567788888888887 89999999999999865 556788
Q ss_pred HHHHHHHhcC---ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010740 396 CLINGYANAG---LFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCRPDSETFSIMT 468 (502)
Q Consensus 396 ~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 468 (502)
.+...|...| ++++|.++++...+.+ +...+..|...|.. .+++++|.++|++..+.| +...+..|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888766 7899999999998864 67788889999998 899999999999999875 688889999
Q ss_pred HHHHh----cCCcHHHHHHHHHHHHhh
Q 010740 469 EAYAK----EGMNDKVYALEQEKLQML 491 (502)
Q Consensus 469 ~~~~~----~g~~~~A~~~~~~~~~~~ 491 (502)
..|.+ .++.++|.+.|+++.+.+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99998 899999999999999988
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-19 Score=166.62 Aligned_cols=292 Identities=8% Similarity=-0.047 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL 221 (502)
Q Consensus 142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 221 (502)
.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 344556666666666677777777777666553 3444555556666666677777777776666532 4455566666
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740 222 IKACVDAM-RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG 300 (502)
Q Consensus 222 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (502)
...+...| ++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++++.. +.+...+..+...+...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence 66666666 677777777766655322 45566666667777777777777777665542 223455555666677777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC--------CCCChHHHHHHHHHHHhcCCH
Q 010740 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ--------FPWTSSTYNNVIEAFSDMGDA 372 (502)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 372 (502)
++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. .+.....+..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 7777777777766543 4456666777777777777777777777666542 122456777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH-HHcCCH
Q 010740 373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC-IKADDL 442 (502)
Q Consensus 373 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 442 (502)
++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 77777777777653 2345667777777777788888877777776653 44566666666666 344443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=6.4e-20 Score=171.34 Aligned_cols=297 Identities=12% Similarity=0.037 Sum_probs=218.2
Q ss_pred hCCCHHHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740 191 RNSLIDEAFV-TLNQMKTLPNCQP--DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD 267 (502)
Q Consensus 191 ~~g~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 267 (502)
..|++++|++ .|++........| +...+..+...+...|++++|...|+++.+... .+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 7776554321111 234566677777777788888888777777643 36667777777777788888
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHH
Q 010740 268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNI---------------LIGAYG 332 (502)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~ 332 (502)
+|.+.|+++++.. +.+..++..+..++...|++++|...++++.... +.+...+.. .+..+.
T Consensus 116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 8888887776643 3466777777777888888888888887777643 222222211 233334
Q ss_pred ccCcHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010740 333 KKRMYDKMSSVMEYMRKLQFPW-TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411 (502)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 411 (502)
..|++++|...++.+.+..... +..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998875442 57889999999999999999999999998763 345788999999999999999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCcHHHH
Q 010740 412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP----------DSETFSIMTEAYAKEGMNDKVY 481 (502)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p----------~~~~~~~l~~~~~~~g~~~~A~ 481 (502)
..++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999998874 5678889999999999999999999999988753221 2688999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 010740 482 ALEQEKLQMLLE 493 (502)
Q Consensus 482 ~~~~~~~~~~~~ 493 (502)
.++++.++...+
T Consensus 351 ~~~~~~l~~~~~ 362 (368)
T 1fch_A 351 AADARDLSTLLT 362 (368)
T ss_dssp HHHTTCHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 999887776543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=8.7e-20 Score=170.40 Aligned_cols=303 Identities=8% Similarity=-0.046 Sum_probs=172.8
Q ss_pred hhhcHHHHHH-HHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740 120 LKKQWFQALQ-VFEMLKEQPFYQP--KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID 196 (502)
Q Consensus 120 ~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 196 (502)
..|++++|++ .|+.......-.| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3578888888 7776554321122 34567788888888889999999988888775 567788888888888888888
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
+|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.... +...+..+.. ... .
T Consensus 116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhh-------h
Confidence 8888888887743 567778888888888888888888888888876432 2221111100 000 0
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 010740 277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP--ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW 354 (502)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (502)
..+ ...+..+ ..+...|++++|...|+++.+.. +. +..++..+...|.+.|++++|...++.+.+....
T Consensus 179 -----~~~-~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 249 (368)
T 1fch_A 179 -----AGL-GPSKRIL-GSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN- 249 (368)
T ss_dssp -------------CTT-HHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -----hcc-cHHHHHH-HHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 000 0001111 11224555555555555555432 11 3455555555555555555555555555554332
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----------C
Q 010740 355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIA----------E 424 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~ 424 (502)
+...|..+...+...|++++|...|+++.+.. +.+...+..+..+|...|++++|...++.+.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 44555555555666666666666666555432 223455555666666666666666666555543210 1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740 425 NVSFYNAVISACIKADDLMEMERVYK 450 (502)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 450 (502)
...+|..+..+|...|++++|..+++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14566666666666666666666654
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=8.6e-17 Score=157.62 Aligned_cols=368 Identities=10% Similarity=0.037 Sum_probs=247.0
Q ss_pred HhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHHH
Q 010740 119 VLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY-CRNSLIDE 197 (502)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 197 (502)
...|++++|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|+++++. .|+...|...+... ...|+.++
T Consensus 23 ~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhh
Confidence 5678889999999888876 3667778888888888889999999999888876 36777776666432 34455555
Q ss_pred HHH----HHHHhhcCCCC-CCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 010740 198 AFV----TLNQMKTLPNC-QPDVYTYSTLIKACVD---------AMRFELIETLYQDMDERSVTPNTVTQNIVLGGY--- 260 (502)
Q Consensus 198 a~~----~~~~~~~~~~~-~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~--- 260 (502)
|.+ +|++....-|. +.+...|...+..... .|+++.|..+|++..+.........|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence 544 55555432122 2345566666665543 566777777777766521111112222111100
Q ss_pred ----------hccCChH------------------------------------------------------------HHH
Q 010740 261 ----------GKAGMFD------------------------------------------------------------QME 270 (502)
Q Consensus 261 ----------~~~g~~~------------------------------------------------------------~a~ 270 (502)
.+.++++ .+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 0111122 344
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 010740 271 RVLSGMLESATCKPDVWTMNTILSVFAN-------KGQVD-------MMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 336 (502)
.+|++.+... +.+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|+
T Consensus 259 ~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 259 FAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 4555554431 2345566666666654 68876 888888888763234567788888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHH
Q 010740 337 YDKMSSVMEYMRKLQFPWTS-STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING-YANAGLFHKVISSV 414 (502)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~ 414 (502)
+++|..+|+.+.+.... +. ..|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|++++|..+|
T Consensus 337 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 99999999988886433 33 578888888888888999999998888753 1223333322222 33588899999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 415 RLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC-RP--DSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 415 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+..
T Consensus 415 e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 415 ELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8887763 55678888888888888999999999999887642 22 24478888888888899999999999998888
Q ss_pred hhcc
Q 010740 492 LEAS 495 (502)
Q Consensus 492 ~~~~ 495 (502)
|++.
T Consensus 494 p~~~ 497 (530)
T 2ooe_A 494 REEY 497 (530)
T ss_dssp HHHH
T ss_pred chhc
Confidence 7543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.2e-19 Score=167.53 Aligned_cols=270 Identities=7% Similarity=-0.048 Sum_probs=209.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010740 214 DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL 293 (502)
Q Consensus 214 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 293 (502)
+...+..+...+.+.|++++|..+|+++.+... .+..++..+...|...|++++|++.|+++++.. +.+...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 344577778888888888888888888877643 367788888888888888888888888887653 34577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-ChHHHHHH
Q 010740 294 SVFANKGQVDMMERWYEKFRNFGIDP----------ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW-TSSTYNNV 362 (502)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l 362 (502)
.+|...|++++|...|+++.+.. +. ....+..+...+...|++++|..+++++.+..... +..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 88888888888888888887642 11 12234456788899999999999999998875442 67889999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCH
Q 010740 363 IEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDL 442 (502)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 442 (502)
...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...++.+.+.. +.+..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998764 3467899999999999999999999999998874 55688899999999999999
Q ss_pred HHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740 443 MEMERVYKRMKEKHCR-----------PDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 443 ~~a~~~~~~~~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (502)
++|...|+++.+.... .+...|..+..++...|+.+.+.++.++.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999998865211 1357899999999999999999888776433
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.1e-18 Score=158.08 Aligned_cols=271 Identities=5% Similarity=-0.061 Sum_probs=183.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010740 219 STLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298 (502)
Q Consensus 219 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (502)
..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|.+.++++++.. +.+...+..+...+..
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHH
Confidence 3344444444555555555554444322 134444444455555555555555555544431 2234444555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------H-HH-HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 010740 299 KGQVDMMERWYEKFRNFGIDPETRTFNI-------------L-IG-AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI 363 (502)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (502)
.|++++|.+.++++.+.. +.+...+.. + .. .+...|++++|.+.++.+.+.... +...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 555555555555554432 111111111 1 22 367788899999999998887655 788889999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 010740 364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443 (502)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (502)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 99999999999999999988764 3457788899999999999999999999988864 556888999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740 444 EMERVYKRMKEKHCRP-----------DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 444 ~a~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
+|.+.|+++.+..... +...|..+..+|.+.|++++|.++++++++..++..+
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9999999988753221 3678899999999999999999999988877665443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=8.2e-19 Score=163.60 Aligned_cols=237 Identities=8% Similarity=-0.019 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 44568888899999999999999999998875 5678889999999999999999999999988743 56688888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010740 223 KACVDAMRFELIETLYQDMDERSVT---------PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL 293 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~g~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 293 (502)
.+|...|++++|...++++.+.... .....+..+...+...|++++|.+.++++++......+...+..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999888764211 0112223345566666666666666666655432222455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHh
Q 010740 294 SVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAK 373 (502)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 373 (502)
..+...|++++|+..|+++.+.. +.+..++..+..+|...|++++|...|+++.+.... +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 66666666666666666655532 334455555555555555555555555555554332 3445555555555555555
Q ss_pred HHHHHHHHHHH
Q 010740 374 HMEYTFEQMHA 384 (502)
Q Consensus 374 ~a~~~~~~m~~ 384 (502)
+|...|+++.+
T Consensus 299 ~A~~~~~~al~ 309 (365)
T 4eqf_A 299 EAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.4e-15 Score=147.50 Aligned_cols=332 Identities=11% Similarity=0.015 Sum_probs=277.6
Q ss_pred HHHHHHHHHHHh----hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHH
Q 010740 109 NTVAETFSDHVL----KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGK----SGQPELARKVFNEMVEEGIEPTPE 180 (502)
Q Consensus 109 ~~~~~~l~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 180 (502)
.....+-..+.. .+++++|++.|+...+.+ +...+..|...|.. .+++++|...|++..+.| +..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 444555556666 789999999999998875 67788889999988 889999999999998875 577
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 010740 181 LYTALLAAYCR----NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVTPNTVT 252 (502)
Q Consensus 181 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 252 (502)
.+..+...|.. .+++++|+++|++..+. .+...+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 221 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELG 221 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHH
Confidence 88888888887 78999999999999874 467888889999988 899999999999998875 5677
Q ss_pred HHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740 253 QNIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTF 324 (502)
Q Consensus 253 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 324 (502)
+..+...|.. .+++++|.++|++..+. .+...+..+...|.. .+++++|+.+|++..+.| +...+
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~ 294 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ 294 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence 8888888876 88999999999998763 366777888888888 899999999999998754 45677
Q ss_pred HHHHHHHHcc-----CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010740 325 NILIGAYGKK-----RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG---DAKHMEYTFEQMHAEGMKADTKTFCC 396 (502)
Q Consensus 325 ~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ 396 (502)
..+...|... +++++|...|....+.+ +...+..+...|...| +.++|.+.|++..+.| +...+..
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 368 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFN 368 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHH
Confidence 7788888876 89999999999998874 5677888888888766 7899999999999864 6788889
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-C-CHHHHHH
Q 010740 397 LINGYAN----AGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCR-P-DSETFSI 466 (502)
Q Consensus 397 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~-p-~~~~~~~ 466 (502)
|...|.. .+++++|..+++...+.+ +...+..|...|.. .++.++|..+|++..+.|.. | +......
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 9999998 899999999999998865 56788889999988 89999999999999998643 2 3334444
Q ss_pred HHHH
Q 010740 467 MTEA 470 (502)
Q Consensus 467 l~~~ 470 (502)
+...
T Consensus 446 l~~~ 449 (490)
T 2xm6_A 446 EKKL 449 (490)
T ss_dssp HTTS
T ss_pred HHhc
Confidence 4433
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.5e-17 Score=156.33 Aligned_cols=370 Identities=11% Similarity=-0.028 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQ-------PFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE-----G-- 174 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-- 174 (502)
..+..+...+...|++++|++.|+...+. ...+....+|+.+..+|...|++++|...+++..+. +
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 33444555667789999999999876541 001334568999999999999999999999987653 1
Q ss_pred CCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCC
Q 010740 175 IEPTPELYTALLAAYCRN--SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC---VDAMRFELIETLYQDMDERSVTPN 249 (502)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~g~~~~ 249 (502)
......++..+..++... +++++|++.|++..+.. +-+...+..+..++ ...++.++|++.+++..+.... +
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 122456777776666654 46899999999988753 45566666555553 4467778899999888876433 5
Q ss_pred HHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010740 250 TVTQNIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN 325 (502)
Q Consensus 250 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (502)
..++..+...+.. .|++++|.+.+++.++.. +.+...+..+...|...|++++|...+++..+.. +.+..++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 5666665554443 467889999999887653 4567788889999999999999999999998754 55677777
Q ss_pred HHHHHHHcc-------------------CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740 326 ILIGAYGKK-------------------RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386 (502)
Q Consensus 326 ~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 386 (502)
.+..+|... +.++.|...+....+.... +...+..+...+...|++++|...|++..+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 777777542 2356777788887776554 66778889999999999999999999988764
Q ss_pred CCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010740 387 MKADTK--TFCCLIN-GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET 463 (502)
Q Consensus 387 ~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 463 (502)
..+... .+..+.. .....|++++|+..|++..+. .|+..... +....+.++++.....+ +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHH
Confidence 333221 2233332 234678999999999988875 34433222 22344556666666653 236789
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccc
Q 010740 464 FSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH 497 (502)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 497 (502)
|..+..+|...|++++|++.|+++++.++..+..
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 9999999999999999999999999987765543
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=8.9e-18 Score=153.88 Aligned_cols=241 Identities=11% Similarity=0.035 Sum_probs=113.9
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740 113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192 (502)
Q Consensus 113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (502)
.....+...|++++|+.+|+.+.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 33444445555555555555554432 3344455555555555555555555555555442 33444555555555555
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHhccCChHHHH
Q 010740 193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIV-LG-GYGKAGMFDQME 270 (502)
Q Consensus 193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~-~~~~~g~~~~a~ 270 (502)
|++++|++.++++.+.. +.+...+..+... .|+......+ .. .+...|++++|.
T Consensus 103 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 55555555555544421 1111111111000 0000111111 11 255556666666
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
+.++++++.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus 159 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666665432 2245555566666666666666666666655432 334445555555555555555555555555544
Q ss_pred CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740 351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA 384 (502)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 384 (502)
... +...+..+...+...|++++|.+.|+++.+
T Consensus 236 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 236 NPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 322 444555555555555555555555555444
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=3.7e-16 Score=153.12 Aligned_cols=343 Identities=7% Similarity=-0.068 Sum_probs=247.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST 220 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+-+...|..++.. .+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|+++... .|+...|..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHH
Confidence 5578899999984 78999999999999999863 667889999999999999999999999999975 368888887
Q ss_pred HHHHH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCC
Q 010740 221 LIKAC-VDAMRFELIET----LYQDMDE-RSVTP-NTVTQNIVLGGYGK---------AGMFDQMERVLSGMLESATCKP 284 (502)
Q Consensus 221 ll~~~-~~~~~~~~a~~----~~~~~~~-~g~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~ 284 (502)
++... ...|+++.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.++. ....
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhh
Confidence 77543 34577766654 7776654 35443 56778877776654 68899999999998762 1111
Q ss_pred CHHHHHHHHHHH-------------HhcCCHH------------------------------------------------
Q 010740 285 DVWTMNTILSVF-------------ANKGQVD------------------------------------------------ 303 (502)
Q Consensus 285 ~~~~~~~l~~~~-------------~~~g~~~------------------------------------------------ 303 (502)
....|....... ...++++
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 122222211100 0111222
Q ss_pred ------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCcHH-------HHHHHHHHHHHcCCCCChH
Q 010740 304 ------------MMERWYEKFRNFGIDPETRTFNILIGAYGK-------KRMYD-------KMSSVMEYMRKLQFPWTSS 357 (502)
Q Consensus 304 ------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~ 357 (502)
++..+|++.+... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 3344454444432 3445566666666654 68876 8899999888632334688
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-T-KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (502)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|+.+.+.. +.+...|...+..
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 8999999999999999999999999885 454 2 478888888888999999999999988753 2333434333322
Q ss_pred -HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 436 -CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 436 -~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
+...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++++...+.+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 336899999999999888763 2368889999999999999999999999999875443
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=3.4e-17 Score=146.57 Aligned_cols=276 Identities=10% Similarity=0.048 Sum_probs=201.8
Q ss_pred HHHHHhCCCHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010740 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDV--YTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA 263 (502)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 263 (502)
++.....|++..|+..++++... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 45566789999999988887653 3443 3455677888999999988876644 2355777888888888889
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010740 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV 343 (502)
Q Consensus 264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 343 (502)
++.++|++.+++++.....+.+...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998876421233566677777888899999999998876 56777888888889999999999999
Q ss_pred HHHHHHcCCCCChHHH---HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 344 MEYMRKLQFPWTSSTY---NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
++.+.+... +.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+.
T Consensus 153 l~~~~~~~p--~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQDE--DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCc--CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998888753 32211 122333445588889999998888763 457778888888888889999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Q 010740 421 QIAENVSFYNAVISACIKADDLME-MERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483 (502)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (502)
. +.+..++..++..+...|+.++ +.++++++.+.. |+.... .....+.+.+|++..-
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHH---HHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHH---HHHHHHHHHHHHHHHH
Confidence 4 5677788888888888888765 567888888753 443322 3345555556655543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1e-16 Score=143.55 Aligned_cols=274 Identities=11% Similarity=0.023 Sum_probs=207.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010740 151 LVLLGKSGQPELARKVFNEMVEEGIEPTP--ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA 228 (502)
Q Consensus 151 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 228 (502)
++.....|++..|+..++..... .|+. .....+.++|...|++++|+..++.. .+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCC
Confidence 45566789999999988876543 3433 35566788999999999998766442 256777888888899999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740 229 MRFELIETLYQDMDERSVTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER 307 (502)
Q Consensus 229 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 307 (502)
++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999988876544 556677777889999999999998876 3577888889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHH---HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740 308 WYEKFRNFGIDPETRTF---NILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA 384 (502)
Q Consensus 308 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 384 (502)
.|+++.+.. |+.... ..++..+...|++++|..+|+++.+... .+...++.+..++.+.|++++|...|++..+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998764 443211 2233445566899999999999988844 4888899999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 010740 385 EGMKADTKTFCCLINGYANAGLFHK-VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER 447 (502)
Q Consensus 385 ~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 447 (502)
.. +-+..++..++..+...|+.++ +.++++++.+.. |.+.. +.+...+.+.++++..
T Consensus 229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~----~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPF----IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH----HHHHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChH----HHHHHHHHHHHHHHHH
Confidence 64 3367788889989999998875 568888888753 33333 2334445555555543
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.9e-15 Score=154.11 Aligned_cols=331 Identities=11% Similarity=0.135 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPF-YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA 187 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 187 (502)
+.+..+.+.+...|.+.+|+++++.+.-.+. +.-+....+.++.+..+. +..+..+..+++... + ...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHH
Confidence 4555677888889999999999998874431 223445666677666666 556666666665421 1 344778
Q ss_pred HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740 188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD 267 (502)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 267 (502)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|+++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence 88889999999999998632 2222333332 6788999999988652 5788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 010740 268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYM 347 (502)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 347 (502)
+|.+.|.+. .|...|..++.+|.+.|++++|.++|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 999999654 377888889999999999999999999877654 34334445889999999888644442
Q ss_pred HHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChH
Q 010740 348 RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS 427 (502)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (502)
+ .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 1 236677778999999999999999999985 37889999999999999999999876 4568
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.+++..+...+.|
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 89999999999999999888765433 3677888999999999999999999999988766555555
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.9e-18 Score=157.96 Aligned_cols=307 Identities=14% Similarity=0.106 Sum_probs=124.4
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 199 (502)
..|++++|.++++.+ ++..+|..|+.++.+.|++++|.+.|.+ .+|...|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 456788888888775 2234888888888888888888888854 256667888888888888888888
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES 279 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 279 (502)
.+++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 877666652 3556677778888888888888777764 256668888888888888888888888766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHH
Q 010740 280 ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY 359 (502)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (502)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhH
Confidence 25777888888888888888888776 2577788888888888888888544333 22244445
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCC------ChHHHHH
Q 010740 360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA--GLFHKVISSVRLASKLQIAE------NVSFYNA 431 (502)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~ 431 (502)
..++..|.+.|++++|..+++...... +-....|+-|..+|++- +++.+.++.|. .+.++++ +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHH
Confidence 567777888888888888888777554 44556777776666654 23333333333 1223333 4566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcH
Q 010740 432 VISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478 (502)
Q Consensus 432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 478 (502)
++..|.+.++++.|.. .|.+. .|+.---....+...+..+.+
T Consensus 288 ~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 7777777777777654 45554 223222223344444555544
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=7.4e-16 Score=148.91 Aligned_cols=336 Identities=13% Similarity=0.010 Sum_probs=228.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhC-----CCCC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQ-----PFYQ-PKEGTYMKLLVLLGKS--GQPELARKVFNEMVEEGIEPTPEL 181 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~ 181 (502)
++..+...+...|++++|+..|+.+.+. +... ....++..+..++... +++++|...|++..+.. +-+...
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~ 174 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEF 174 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHH
Confidence 4455666778899999999999987542 1111 2356777777666654 46999999999999875 445666
Q ss_pred HHHHHHH---HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010740 182 YTALLAA---YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVTPNTVTQN 254 (502)
Q Consensus 182 ~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 254 (502)
+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.. .+++++|.+++++...... .+..++.
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~ 251 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHH
Confidence 6665555 445688899999999988753 5667777777666654 4678899999999887643 3778899
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhC
Q 010740 255 IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK-------------------GQVDMMERWYEKFRNF 315 (502)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~ 315 (502)
.+...|...|++++|.+.+++.++.. +.+..++..+..+|... +.+++|...+++..+.
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999998753 34567777777777543 2356788888888775
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH--HHHHHHH-HHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 010740 316 GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS--TYNNVIE-AFSDMGDAKHMEYTFEQMHAEGMKADTK 392 (502)
Q Consensus 316 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 392 (502)
. +.+...+..+...|...|++++|...|++..+....+... .+..+.. .....|+.++|+..|++..+. .|+..
T Consensus 330 ~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~ 406 (472)
T 4g1t_A 330 N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSR 406 (472)
T ss_dssp C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCH
T ss_pred C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH
Confidence 4 5566778889999999999999999999998876543221 2333332 245689999999999999885 45543
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC-RPDSETF 464 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~ 464 (502)
.... ....+.++++...+.. +.+..+|..+..+|...|++++|++.|++..+.|. -|+..+|
T Consensus 407 ~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 407 EKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2222 2234455566665554 66788999999999999999999999999998653 2444443
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5.3e-18 Score=155.01 Aligned_cols=342 Identities=11% Similarity=0.095 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740 91 IKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEM 170 (502)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 170 (502)
+++.....++.+....| ..+..++...|++++|++.|.+. +|..+|..++..+...|++++|...++..
T Consensus 19 ld~A~~fae~~~~~~vW----s~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 19 LDRAYEFAERCNEPAVW----SQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChHHH----HHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44445555555555444 45667788889999999998642 36668888888999999999999977777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010740 171 VEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT 250 (502)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 250 (502)
++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp -----------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 664 4567788889999999999988887763 256668999999999999999999999876
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740 251 VTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA 330 (502)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 330 (502)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +.....-...++..
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY 216 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence 36888899999999999999999877 2788899999999999999999655443 22333445568888
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcCCCC------CHHHHHHHHHHHH
Q 010740 331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM--GDAKHMEYTFEQMHAEGMKA------DTKTFCCLINGYA 402 (502)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~p------~~~~~~~l~~~~~ 402 (502)
|.+.|++++|..+++...... +-....|+.+.-.|++- +++.+.++.|.. +..++| +...|..+.-.|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887765 33677788887777764 344444444432 112222 2345777777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 010740 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 482 (502)
..++++.|.. .|.+. +++..--..+.+...+..+.+--.+...-..+. .+...+-|+.++...=+..+++.
T Consensus 294 ~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~ 364 (449)
T 1b89_A 294 KYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVN 364 (449)
T ss_dssp HTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHH
T ss_pred hhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHH
Confidence 8888887765 33332 334333444555556666665544444433432 23335666666655556666666
Q ss_pred HHHH
Q 010740 483 LEQE 486 (502)
Q Consensus 483 ~~~~ 486 (502)
++++
T Consensus 365 ~~~~ 368 (449)
T 1b89_A 365 YFSK 368 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=5e-18 Score=167.49 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHH
Q 010740 286 VWTMNTILSVFANKGQVDMMERWYEKFRN---FGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV 362 (502)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (502)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655542 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 363 IEAFSDMGD-AKHMEYTFEQMHAEGMKADTKTFCCLINGY 401 (502)
Q Consensus 363 ~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 401 (502)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666655 355666666666666666666666555443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=168.18 Aligned_cols=152 Identities=12% Similarity=0.154 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHH---cCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 010740 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRK---LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFC 395 (502)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 395 (502)
.-..||++||++|++.|++++|.++|.+|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456888888888888888888888877653 4778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 010740 396 CLINGYANAGLF-HKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD------SETFSIMT 468 (502)
Q Consensus 396 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~------~~~~~~l~ 468 (502)
++|.++++.|+. ++|.+++++|.+.|+.||..+|+.++..+.+. .+++.++++ .-++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 888888888874 67888888888888888888888887665543 233333333 2244444 44555566
Q ss_pred HHHHhcC
Q 010740 469 EAYAKEG 475 (502)
Q Consensus 469 ~~~~~~g 475 (502)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666554
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.1e-15 Score=134.68 Aligned_cols=227 Identities=11% Similarity=0.010 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCC----HHHHH
Q 010740 216 YTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT-CKPD----VWTMN 290 (502)
Q Consensus 216 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 290 (502)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|.+.+++.++... ..++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555556666666666666666655554 4555555666666666666666666655543210 0011 34455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 010740 291 TILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG 370 (502)
Q Consensus 291 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (502)
.+...+...|++++|...|+++... .|+. ..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHHh
Confidence 5555555555555555555555442 2221 2233344
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740 371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK 450 (502)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 450 (502)
++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+..+|..+..+|...|++++|...|+
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4555555555544431 1123344555555555555566655555555543 3345555566666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 451 RMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 451 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
++.+... .+...|..+..+|.+.|++++|.+.++++++..
T Consensus 198 ~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 6655421 245556666666666666666666666666655
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.8e-15 Score=129.38 Aligned_cols=197 Identities=12% Similarity=0.009 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 010740 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (502)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 33444455555555555555555555555433 344455555555555555555555555555554433 4455555555
Q ss_pred HHHhc-----------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 010740 365 AFSDM-----------GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVI 433 (502)
Q Consensus 365 ~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 433 (502)
++... |++++|...|++..+.. +-+...+..+..++...|++++|+..++++.+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 77777777777766642 2245566667777777777777777777777665 5666677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 434 SACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
.+|...|++++|+..|++..+... .+...+..+...+.+.|++++|++.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777776532 25666777777777777777777777654
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=4.3e-14 Score=125.69 Aligned_cols=229 Identities=10% Similarity=0.016 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740 249 NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTF 324 (502)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 324 (502)
+..++..+...|...|++++|.+.|++..+ ..+...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 344555556666666666666666666654 2244555666666666 666666666666666654 45566
Q ss_pred HHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010740 325 NILIGAYGK----KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMKADTKTFCC 396 (502)
Q Consensus 325 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 396 (502)
..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666666 677777777777666653 55666777777777 777777777777777654 4566666
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010740 397 LINGYAN----AGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCRPDSETFSIMT 468 (502)
Q Consensus 397 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 468 (502)
+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777776 778888888888777653 45667777778888 888888888888888764 366777778
Q ss_pred HHHHh----cCCcHHHHHHHHHHHHhhhhccc
Q 010740 469 EAYAK----EGMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 469 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
..|.+ .+++++|++.++++.+.++....
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88887 88888888888888888766543
No 39
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.5e-13 Score=140.45 Aligned_cols=317 Identities=13% Similarity=0.163 Sum_probs=250.4
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
...+...|.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++.+.|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 4456678999999999998631 2233344433 778899999998865 458889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (502)
+++|++.|.+. .|...|..++.+|.+.|++++|.+.+....+..- +....+.++.+|++.+++++.....
T Consensus 1121 ~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH-
Confidence 99999999663 4667788899999999999999999998877642 3333345888999999988644332
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 010740 275 GMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW 354 (502)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (502)
+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+.+. .
T Consensus 1191 ---~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ---N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ---h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 356677888999999999999999999985 37999999999999999999999877 2
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740 355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS 434 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 434 (502)
+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|+-|..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 779999999999999999999887664 33466778899999999999999999999888765 556777877887
Q ss_pred HHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010740 435 ACIKA--DDLMEMERVYKRMKEKHCRP------DSETFSIMTEAYAKEGMNDKVYALEQE 486 (502)
Q Consensus 435 ~~~~~--g~~~~a~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (502)
+|.+. ++..++.++|..-.. ++| +...|.-++-.|.+.|++++|+...-+
T Consensus 1323 LyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 77764 455566666654332 222 567899999999999999999854433
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.3e-15 Score=130.86 Aligned_cols=225 Identities=11% Similarity=0.050 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHH
Q 010740 179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVT--PN----TVT 252 (502)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~ 252 (502)
...+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 5678889999999999999999999998863 77889999999999999999999999998875321 12 578
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010740 253 QNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYG 332 (502)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (502)
+..+...|...|++++|.+.|++.++. .|+. ..+...|++++|...++++.... +.+...+..+...+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 899999999999999999999999875 4553 44667788899999999888743 344556677777777
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010740 333 KKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVIS 412 (502)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 412 (502)
..|++++|...++.+.+.... +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777777777777777765443 55666666666666666666666666666542 2234555555555556666666665
Q ss_pred HHHHHHh
Q 010740 413 SVRLASK 419 (502)
Q Consensus 413 ~~~~~~~ 419 (502)
.++.+.+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=5.8e-16 Score=147.86 Aligned_cols=349 Identities=11% Similarity=0.035 Sum_probs=230.0
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP---ELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
+...+.+.|++++|+++|+.+.+.+ +..++..|...|...|+. ++|...|++..+. +...+..+...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 3445567899999999999988766 344666677777778888 8999999998853 5666777777566
Q ss_pred hCC-----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740 191 RNS-----LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE---LIETLYQDMDERSVTPNTVTQNIVLGGYGK 262 (502)
Q Consensus 191 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 262 (502)
..+ ++++|+.+|++..+. + .++ .+..|...|...+..+ .+.+.+......| +...+..+...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-G-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-T-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-C-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 655 788999999999875 2 233 5666777777665433 3455555555444 34566677777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----C
Q 010740 263 AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG---QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK----R 335 (502)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g 335 (502)
.+.++++......+.+.. ...+...+..+...|...| +.++|+++|++..+.| +++...+..|...|... +
T Consensus 154 ~~~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HTCGGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred CCCcccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 775555444433222110 1123337788888888899 8899999999998877 56666666777777654 6
Q ss_pred cHHHHHHHHHHHHHcCCCCChHHHHHHHHH-H--HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----Ch
Q 010740 336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEA-F--SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG-----LF 407 (502)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~ 407 (502)
++++|.+.|+... . -+...+..+... + ...+++++|.+.|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 8899999999877 2 356677777776 4 45789999999999998876 6777777887777 45 89
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHH
Q 010740 408 HKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK----EGMNDK 479 (502)
Q Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 479 (502)
++|.++|+... +.+...+..|...|.. ..++++|.++|++..+.|. ......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999998777 3456677777777766 3489999999999988763 4455566666664 457889
Q ss_pred HHHHHHHHHHhhhhc
Q 010740 480 VYALEQEKLQMLLEA 494 (502)
Q Consensus 480 A~~~~~~~~~~~~~~ 494 (502)
|..+++++.+.+...
T Consensus 377 A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 377 AYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHCCCHH
Confidence 999999988876543
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=2.9e-15 Score=128.11 Aligned_cols=198 Identities=12% Similarity=0.031 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010740 249 NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI 328 (502)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (502)
+...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34444555555555555555555555554321 2244445555555555555555555555555433 33444555555
Q ss_pred HHHHcc-----------CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740 329 GAYGKK-----------RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL 397 (502)
Q Consensus 329 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 397 (502)
.++... |++++|...+++..+..+. +...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 7777777777777766544 56667777777777777777777777777665 566677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
..+|...|++++|+..++.+.+.. +.+...+..+..++...|++++|+..|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777777653 4566667777777777777777777776553
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=5.1e-15 Score=131.62 Aligned_cols=239 Identities=13% Similarity=-0.005 Sum_probs=123.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 010740 254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP--ETRTFNILIGAY 331 (502)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 331 (502)
......+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..++++.+....+ ....|..+...|
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334444555555555555555554432 1122344445555555555555555555555421111 122345555555
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010740 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411 (502)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 411 (502)
...|++++|.+.|+...+.... +...+..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554433 44555556666666666666666665555441 223444444442333334666666
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCcHHHH
Q 010740 412 SSVRLASKLQIAENVSFYNAVISACIKADD---LMEMERVYKRMKEKH-CRPD------SETFSIMTEAYAKEGMNDKVY 481 (502)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~ 481 (502)
+.++.+.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666665543 3334555555555555555 555666655555431 0112 135555666666666666666
Q ss_pred HHHHHHHHhhhhcccc
Q 010740 482 ALEQEKLQMLLEASGH 497 (502)
Q Consensus 482 ~~~~~~~~~~~~~~~~ 497 (502)
+.++++++..|.+...
T Consensus 242 ~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 242 AAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCccHHHH
Confidence 6666666666555443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=1.4e-14 Score=127.20 Aligned_cols=202 Identities=6% Similarity=-0.043 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740 289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (502)
+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++++.+.... +...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence 3334444444444444444444444322 233444444444455555555555555544444322 44455555555555
Q ss_pred cCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 010740 369 MGDAKHMEYTFEQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER 447 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 447 (502)
.|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555422223 23445555555666666666666666555543 3345556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740 448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 448 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
+++++.+.. +.+...+..+...+...|++++|.+.++++.+..+.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 666665542 2345555666666666666666666666666655543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1e-14 Score=134.96 Aligned_cols=231 Identities=8% Similarity=-0.021 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010740 214 DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM-FDQMERVLSGMLESATCKPDVWTMNTI 292 (502)
Q Consensus 214 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 292 (502)
+...|..+..++...|++++|++.++++++.... +...|+.+..++...|+ +++|+..|+++++.. +.+...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 4556777777788888888888888888776433 66777777778888885 888888888877653 3356777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCC
Q 010740 293 LSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD-MGD 371 (502)
Q Consensus 293 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 371 (502)
..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 777777777777777777777654 556667777777777777777777777777776655 66777777777766 444
Q ss_pred HhHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC----
Q 010740 372 AKHM-----EYTFEQMHAEGMKADTKTFCCLINGYANAG--LFHKVISSVRLASKLQIAENVSFYNAVISACIKAD---- 440 (502)
Q Consensus 372 ~~~a-----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 440 (502)
.++| +..|++.++.. +-+...|..+...+...| ++++|++.+..+ +. .+.+...+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4555 35566655542 123445555555555555 456666665555 22 2344555556666665542
Q ss_pred -----CHHHHHHHHHHH
Q 010740 441 -----DLMEMERVYKRM 452 (502)
Q Consensus 441 -----~~~~a~~~~~~~ 452 (502)
.+++|+++|+++
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 135566666665
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=4.1e-14 Score=121.68 Aligned_cols=202 Identities=9% Similarity=0.001 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740 289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (502)
+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+.+.... +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3333444444444444444444443322 223334444444444444444444444444443222 34444444444444
Q ss_pred c-CCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 010740 369 M-GDAKHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME 446 (502)
Q Consensus 369 ~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 446 (502)
. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 4 555555555554444211222 2344445555555555555555555554432 233445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 447 RVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 447 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
++++++.+.....+...+..+...+...|+.++|..+++.+.+..|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 55555554322124444545555555555555555555555554443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=7.2e-15 Score=128.20 Aligned_cols=203 Identities=10% Similarity=0.057 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 010740 288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS 367 (502)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (502)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|.+.++.+.+.... +...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 34444444445555555555555554422 333444555555555555555555555555444332 4455555555555
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 010740 368 DMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER 447 (502)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 447 (502)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555442 2244455555555556666666666665555542 3345555556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740 448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS 495 (502)
Q Consensus 448 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 495 (502)
.|+++.+... .+..++..+..+|.+.|++++|.+.++++++..+++.
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 6666655422 2455566666666666666666666666666555443
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=2.7e-15 Score=133.57 Aligned_cols=223 Identities=15% Similarity=0.060 Sum_probs=148.8
Q ss_pred hhhcHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQ--PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
..|++++|+..|+.+.+..... .+..++..+...+...|++++|...|+++.+.. +.+..+|..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4588889999998887753111 135577888888888888988888888888764 4567888888888888888888
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (502)
|++.|+++.+.. +.+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...++...
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888888887742 4566778888888888888888888888877653 333333444445556677777777776665
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGID---PETRTFNILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
... .++...+ .++..+...++.++|...+++....... .+..++..+...|.+.|++++|...|+.+.+.
T Consensus 172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 542 2232233 3555566666667777777666532110 01344555555555566666666666555554
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=2.5e-14 Score=127.11 Aligned_cols=192 Identities=15% Similarity=0.089 Sum_probs=77.1
Q ss_pred HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcc
Q 010740 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP--NTVTQNIVLGGYGKA 263 (502)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~ 263 (502)
...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++..+.+..+ ....|..+...+...
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444444444444444443321 2222234444444444444444444444444321111 112244444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010740 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV 343 (502)
Q Consensus 264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 343 (502)
|++++|.+.|++.++.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444321 1123344444444444444444444444444331 22333333333122222344444444
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCC---HhHHHHHHHHHH
Q 010740 344 MEYMRKLQFPWTSSTYNNVIEAFSDMGD---AKHMEYTFEQMH 383 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~ 383 (502)
|+.+.+.... +...+..+..++...|+ +++|...|++..
T Consensus 165 ~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 165 FVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 4444443322 33344444444444444 444444444433
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=4.9e-14 Score=123.67 Aligned_cols=201 Identities=7% Similarity=-0.005 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
..+......+...|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 344445556667788888888888777653 4566778888888888888888888888877764 4467777778888
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 268 (502)
+...|++++|+++|+++.+.+..+.+...+..+..++...|++++|.+.++++.+... .+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888766211133456677777777778888888888877776532 256677777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF 315 (502)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 315 (502)
|...++++++.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777776532 345566667777777777777777777777654
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=3.9e-14 Score=130.99 Aligned_cols=231 Identities=10% Similarity=0.025 Sum_probs=174.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL-IDEAFVTLNQMKTLPNCQPDVYTYSTL 221 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 221 (502)
+..+|..+..++...|++++|+..|+++++.. +-+..+|+.+..++...|+ +++|+..|+++.+.. +.+...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 35578888899999999999999999999875 5668889999999999996 999999999998753 6678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cC
Q 010740 222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN-KG 300 (502)
Q Consensus 222 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g 300 (502)
..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.. ..+...|+.+..++.. .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998887544 77888888888889999999999999888753 3467788888888888 55
Q ss_pred CHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---
Q 010740 301 QVDMM-----ERWYEKFRNFGIDPETRTFNILIGAYGKKR--MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG--- 370 (502)
Q Consensus 301 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 370 (502)
..++| +..|++.+... +-+...|..+...+...| ++++|.+.+..+ +.. +.+...+..++.+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 46677666643 445666777776676666 466776666665 322 225556666666666543
Q ss_pred ------CHhHHHHHHHHH
Q 010740 371 ------DAKHMEYTFEQM 382 (502)
Q Consensus 371 ------~~~~a~~~~~~m 382 (502)
..++|.++|+++
T Consensus 327 ~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 327 CDNKEDILNKALELCEIL 344 (382)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 135566666665
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=7.7e-13 Score=117.57 Aligned_cols=228 Identities=9% Similarity=0.001 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740 178 TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVTPNTVTQ 253 (502)
Q Consensus 178 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 253 (502)
+..++..+...+...|++++|++.|++..+ +.+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 344444555555555555555555555544 1233444445555555 555555555555554443 34444
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740 254 NIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG 329 (502)
Q Consensus 254 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (502)
..+...|.. .+++++|++.|++..+. .+...+..+...|...
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~------------------------------ 123 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDG------------------------------ 123 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcC------------------------------
Confidence 444444444 45555555555544432 1344444444444440
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 010740 330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN-- 403 (502)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 403 (502)
....+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 124 -~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 124 -KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp -SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred -CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 000444555555554444432 33444444444444 555555555555555432 33444555555555
Q ss_pred --cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 010740 404 --AGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 404 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g 456 (502)
.+++++|...++...+.+ +...+..+..+|.. .+++++|.+.|++..+.|
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555543 13444555555555 556666666666655543
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.4e-14 Score=124.85 Aligned_cols=197 Identities=13% Similarity=0.045 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC 225 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 225 (502)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVY 101 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHH
Confidence 33344444444444444444444444332 2234444444444444444444444444443321 22334444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740 226 VDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 305 (502)
...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++++.. +.+...+..+...+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHH
Confidence 444444444444444443321 133344444444444444444444444443321 12333344444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349 (502)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (502)
...++++.+.. +.+..++..+..+|...|++++|.+.++.+.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 44444443322 22233344444444444444444444444433
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.8e-14 Score=128.28 Aligned_cols=248 Identities=8% Similarity=-0.074 Sum_probs=192.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740 226 VDAMRFELIETLYQDMDERSVT---PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (502)
...|++++|+..++++.+.... .+..++..+...+...|++++|.+.|+++++.. +.+...+..+..++...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 4567899999999999886421 246678889999999999999999999998763 34688899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010740 303 DMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQM 382 (502)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 382 (502)
++|...|+++.+.. +.+...+..+..+|...|++++|...++.+.+... +.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998864 55678899999999999999999999999988654 3334444455557779999999999888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010740 383 HAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIA---ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459 (502)
Q Consensus 383 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p 459 (502)
.... +++...+ .++..+...++.++|...++.+...... .+..++..+...|...|++++|...|+++.+.. |
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7653 3333333 4677778888889999999887664311 125778889999999999999999999999863 4
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHH
Q 010740 460 DSETFSIMTEAYAKEGMNDKVYALE 484 (502)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (502)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 333356778888999888776
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=2e-13 Score=117.31 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740 145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA 224 (502)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 224 (502)
..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 344555555555555555555555555442 2334445555555555555555555555544421 2334444444444
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740 225 CVDA-MRFELIETLYQDMDERSVTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302 (502)
Q Consensus 225 ~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (502)
+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++++.. +.+...+..+..++...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence 4444 45555555444444411111 12334444444444444444444444443321 11233344444444444444
Q ss_pred HHHHHHHHHHH
Q 010740 303 DMMERWYEKFR 313 (502)
Q Consensus 303 ~~a~~~~~~~~ 313 (502)
++|...++++.
T Consensus 164 ~~A~~~~~~~~ 174 (225)
T 2vq2_A 164 GDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=8.8e-15 Score=138.23 Aligned_cols=304 Identities=13% Similarity=0.013 Sum_probs=171.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCC---CC-C
Q 010740 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT----PELYTALLAAYCRNSLIDEAFVTLNQMKTLP---NC-Q 212 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~ 212 (502)
......+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++..... +. +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455566677777777777777777777777663 223 2456667777777777777777777654320 00 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCC--------------------hH
Q 010740 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVT-PN----TVTQNIVLGGYGKAGM--------------------FD 267 (502)
Q Consensus 213 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~--------------------~~ 267 (502)
....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 11334555666666666666666666665442100 01 2244444555555555 44
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 010740 268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGI-DPETRTFNILIGAYGKKRMYDKMSSVMEY 346 (502)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 346 (502)
+|.+.+++.++.. ...+. +....++..+...|...|++++|...+++
T Consensus 165 ~A~~~~~~al~~~--------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 165 AAVDFYEENLSLV--------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHHH--------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444332210 00010 01123445555555666666666666655
Q ss_pred HHHcCCC-CC----hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740 347 MRKLQFP-WT----SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD----TKTFCCLINGYANAGLFHKVISSVRL 416 (502)
Q Consensus 347 ~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (502)
..+.... ++ ..++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|...++.
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 5432111 01 23566666677777777777777766653210 011 34666777777788888888888776
Q ss_pred HHhcCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCc
Q 010740 417 ASKLQI-----AENVSFYNAVISACIKADDLMEMERVYKRMKEK----HCRP-DSETFSIMTEAYAKEGMN 477 (502)
Q Consensus 417 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~ 477 (502)
+.+... .....++..+..+|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 655311 111456777788888888888888888876643 1111 244566677777777765
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=7.1e-14 Score=131.99 Aligned_cols=277 Identities=11% Similarity=0.030 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCC-CHH
Q 010740 216 YTYSTLIKACVDAMRFELIETLYQDMDERSVTPN----TVTQNIVLGGYGKAGMFDQMERVLSGMLES---ATCKP-DVW 287 (502)
Q Consensus 216 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~ 287 (502)
..+......+...|++++|...|+++.+.+.. + ..++..+...|...|++++|...+++.++. .+..+ ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444444444445555555555444443211 1 133444444555555555555555443221 00000 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCc--------------------HHHHHH
Q 010740 288 TMNTILSVFANKGQVDMMERWYEKFRNFG-----IDPETRTFNILIGAYGKKRM--------------------YDKMSS 342 (502)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~ 342 (502)
.+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 44455555555666666665555554311 00113355666666666777 777777
Q ss_pred HHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHH
Q 010740 343 VMEYMRKL----QF-PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD----TKTFCCLINGYANAGLFHKVIS 412 (502)
Q Consensus 343 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~ 412 (502)
.+....+. +. .....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77665432 11 11235788888999999999999999998875311 122 2378888999999999999999
Q ss_pred HHHHHHhcCCC-C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCcHHHHH
Q 010740 413 SVRLASKLQIA-E----NVSFYNAVISACIKADDLMEMERVYKRMKEKHCR-PD----SETFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 413 ~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~ 482 (502)
.++...+.... . ...++..+...|...|++++|.+.+++..+.... .+ ..++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987754211 1 1567888999999999999999999988754111 12 5578889999999999999999
Q ss_pred HHHHHHHhhhh
Q 010740 483 LEQEKLQMLLE 493 (502)
Q Consensus 483 ~~~~~~~~~~~ 493 (502)
.++++++....
T Consensus 329 ~~~~al~~~~~ 339 (406)
T 3sf4_A 329 FAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=4.2e-14 Score=133.92 Aligned_cols=282 Identities=11% Similarity=0.026 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCH
Q 010740 180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV----YTYSTLIKACVDAMRFELIETLYQDMDER----S-VTPNT 250 (502)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~ 250 (502)
..+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...+++..+. + .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 334455566677777777777777766542 2232 35666666667777777777776665542 1 11123
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCC
Q 010740 251 VTQNIVLGGYGKAGMFDQMERVLSGMLESAT----CKPDVWTMNTILSVFANKGQ----------VDMMERWYEKFRNFG 316 (502)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~ 316 (502)
.++..+...|...|++++|...+++.++... ......++..+...|...|+ +++|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~-------- 198 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA-------- 198 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH--------
Confidence 4455555566666666666666665543210 00112234444444444444 0000000
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC
Q 010740 317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL----QF-PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD 390 (502)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~ 390 (502)
+++|.+.+.+..+. +. ......+..+...+...|++++|...+++..+... ..+
T Consensus 199 --------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 199 --------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 44444444443221 00 01223556666666777777777777766654210 011
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----C
Q 010740 391 ----TKTFCCLINGYANAGLFHKVISSVRLASKLQIA-----ENVSFYNAVISACIKADDLMEMERVYKRMKEKH----C 457 (502)
Q Consensus 391 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~ 457 (502)
..++..+...|...|++++|...++.+.+.... ....++..+...|...|++++|...+++..+.. .
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 225667777788888888888888766554110 124567778888888888888888888776531 1
Q ss_pred C-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 458 R-PDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 458 ~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
. ....++..+...|.+.|++++|.+.++++++..
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1 113467778888888999999999999888874
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=2.4e-12 Score=116.40 Aligned_cols=224 Identities=10% Similarity=0.063 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010740 267 DQMERVLSGMLESATCKPDVWTMNTILSVFA-------NKGQV-------DMMERWYEKFRNFGIDPETRTFNILIGAYG 332 (502)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (502)
++|..+|++.++.. +.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45555666655432 234445555554443 23554 666666666665211334456666666666
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHH
Q 010740 333 KKRMYDKMSSVMEYMRKLQFPWTSS-TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA-NAGLFHKV 410 (502)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a 410 (502)
+.|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 667777777777766664332 333 66666666666777777777777766543 223333333222221 25777777
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH-CRP--DSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777766652 4456667777777777777777777777777652 233 3556777777777777777777777777
Q ss_pred HHhhhhcc
Q 010740 488 LQMLLEAS 495 (502)
Q Consensus 488 ~~~~~~~~ 495 (502)
.+..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 77766543
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=4.3e-13 Score=111.38 Aligned_cols=172 Identities=10% Similarity=0.057 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN 399 (502)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 399 (502)
+..+|..+...|.+.|++++|.+.|++..+..+. +...+..+..++...|++++|...+....... .-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556677777777777777777777777766554 66777777777777777777777777776653 234556666777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 010740 400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479 (502)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 479 (502)
.+...++++.+...+..+.... +.+...+..+..+|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 7777888888888887777654 55677777888888888888888888888877643 267778888888888888888
Q ss_pred HHHHHHHHHHhhhhcc
Q 010740 480 VYALEQEKLQMLLEAS 495 (502)
Q Consensus 480 A~~~~~~~~~~~~~~~ 495 (502)
|++.|+++++..|.+.
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 8888888888877654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=5.7e-14 Score=132.98 Aligned_cols=279 Identities=11% Similarity=-0.016 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKE----GTYMKLLVLLGKSGQPELARKVFNEMVEE----G-IEPTP 179 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 179 (502)
..+......+...|++++|+..|+.+.+.. +.+. ..|..+...+...|++++|...|++..+. + .+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 334445566778899999999999988763 3333 47888999999999999999999987654 1 12234
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 010740 180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLP----NCQPDVYTYSTLIKACVDAMR-----------------FELIETLY 238 (502)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~ 238 (502)
.++..+...|...|++++|+..+++..+.. ..+....++..+...+...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888889999999999999988865421 012234467777788888888 77777777
Q ss_pred HHHHhC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 010740 239 QDMDER----SV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWY 309 (502)
Q Consensus 239 ~~~~~~----g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 309 (502)
++..+. +. .....++..+...|...|++++|.+.+++.++...-..+ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 11 112235556666666667777776666665432110111 124455555555555555555555
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--
Q 010740 310 EKFRNFGID-PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG-- 386 (502)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-- 386 (502)
++....... .+. .....++..+...+...|++++|...+++..+..
T Consensus 287 ~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 287 KRTLALAVELGER-------------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 554431100 000 0012334444455555555555555555443321
Q ss_pred --C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 387 --M-KADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 387 --~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
. .....++..+...|...|++++|.+.++...+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0 001234555566666666666666666665554
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=4.9e-11 Score=117.77 Aligned_cols=381 Identities=10% Similarity=0.055 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCCHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ---PELARKVFNEMVEEG-IEPTPELYTA 184 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~~~~ 184 (502)
+.....+..+...+.++.+..+|+.+... ++.+...|...+..-.+.|+ ++.+.++|++.+... .+|+...|..
T Consensus 67 ~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 67 FLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44555666666778899999999988876 57777888888888888888 999999999888763 1378888887
Q ss_pred HHHHHHhCCCH--------HHHHHHHHHhhcCCCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCC
Q 010740 185 LLAAYCRNSLI--------DEAFVTLNQMKTLPNC-QP-DVYTYSTLIKACV---------DAMRFELIETLYQDMDERS 245 (502)
Q Consensus 185 l~~~~~~~g~~--------~~a~~~~~~~~~~~~~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g 245 (502)
.+....+.++. +...++|+.....-|. .+ +...|...+.... ..++++.+.++|+.++...
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP 224 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP 224 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence 77666554443 3344677765543344 33 4567777766543 2334566777777766431
Q ss_pred CCCCHHHHHH----------------------------------------------------------------------
Q 010740 246 VTPNTVTQNI---------------------------------------------------------------------- 255 (502)
Q Consensus 246 ~~~~~~~~~~---------------------------------------------------------------------- 255 (502)
...-..+|..
T Consensus 225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l 304 (679)
T 4e6h_A 225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304 (679)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence 1111122211
Q ss_pred ---HHHHHhccC-------ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHH
Q 010740 256 ---VLGGYGKAG-------MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME-RWYEKFRNFGIDPETRTF 324 (502)
Q Consensus 256 ---l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~ 324 (502)
.+..--..+ ..+.+..+|++.+... .-....|...+..+...|+.++|. ++|++.... .+.+...+
T Consensus 305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 111100000 0111223344443321 223444555555566678888886 999888763 35566667
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCC---------CCC------------hHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010740 325 NILIGAYGKKRMYDKMSSVMEYMRKLQF---------PWT------------SSTYNNVIEAFSDMGDAKHMEYTFEQMH 383 (502)
Q Consensus 325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 383 (502)
..++...-+.|+++.|.++|+.+.+... .|+ ..+|...+....+.|..+.|..+|.+..
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788888889999999999998876410 121 2367777888888899999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--C
Q 010740 384 AEGMKADTKTFCCLINGYANA-GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP--D 460 (502)
Q Consensus 384 ~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--~ 460 (502)
+.........|...+..-.+. ++.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++.......+ .
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 751112233443333333343 4589999999988886 56677778888888888999999999999998864322 3
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740 461 SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS 495 (502)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 495 (502)
...|...+..-.+.|+.+.+.++.+++.+..|++.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 45788888888899999999999999999887643
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=1.2e-13 Score=126.52 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKLQIA-E----NVSFYNAVISACIKADDLMEMERVYKRMKEK----HCRP-DSE 462 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p-~~~ 462 (502)
++..+...+...|++++|...++...+.... . ...++..+...+...|++++|...+++..+. +-.+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4555556666666666666666555432100 0 1445666777777777777777777766543 1100 134
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 463 TFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
++..+...|.+.|++++|.+.++++++...
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 666777788888888888888888877654
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=1.1e-13 Score=126.84 Aligned_cols=274 Identities=11% Similarity=0.000 Sum_probs=152.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHH
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPK----EGTYMKLLVLLGKSGQPELARKVFNEMVEE----GIE-PTPELYTA 184 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 184 (502)
....+...|++++|+..|+.+.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3455667889999999998887753 233 356778888888888888888888876543 111 12456777
Q ss_pred HHHHHHhCCCHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 010740 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPD----VYTYSTLIKACVDAMR--------------------FELIETLYQD 240 (502)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~ 240 (502)
+...+...|++++|.+.+++..+...-..+ ..++..+...+...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 778888888888888888776542110122 3356667777777777 6777766666
Q ss_pred HHhC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740 241 MDER----SV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWYEK 311 (502)
Q Consensus 241 ~~~~----g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 311 (502)
.... +. .....++..+...+...|++++|.+.+++.++...-.++ ...+..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4431 10 111234555555566666666666666555432100011 12344444555555555555555544
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----
Q 010740 312 FRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP-WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG---- 386 (502)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---- 386 (502)
...... ..+.. ....++..+...+...|++++|...+++..+..
T Consensus 249 al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 249 TLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 432100 00000 002344445555555555555555555544321
Q ss_pred CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 387 MK-ADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 387 ~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
-. ....++..+...|...|++++|...++++.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 00 01234555666666666666666666666553
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=3.2e-13 Score=126.46 Aligned_cols=234 Identities=8% Similarity=-0.073 Sum_probs=165.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCCHHHHH
Q 010740 256 VLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWYEKFRNFG--I----DPETRTFN 325 (502)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~ 325 (502)
....+...|++++|.+.+++.++...-.++ ..++..+...|...|++++|...+++..+.- . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566778888888888777543111122 3567777778888888888888887776521 1 11234677
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCCHHHHH
Q 010740 326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPW-T----SSTYNNVIEAFSDMGDAKHMEYTFEQMHAE----GM-KADTKTFC 395 (502)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 395 (502)
.+..+|...|++++|...+.+..+..... + ..++..+..+|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 77888888888888888888776542111 1 246778888889999999999998888762 22 22356788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc----CCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010740 396 CLINGYANAGLFHKVISSVRLASKL----QIAENVSFYNAVISACIKADD---LMEMERVYKRMKEKHCRPD-SETFSIM 467 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~g~~p~-~~~~~~l 467 (502)
.+...|...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8889999999999999999877654 112223335678888888898 77777777665 22232 4467788
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 468 TEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
...|...|++++|.+.++++++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=9.4e-13 Score=123.30 Aligned_cols=165 Identities=10% Similarity=0.046 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CC-CCChH
Q 010740 288 TMNTILSVFANKGQVDMMERWYEKFRNFG----I-DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL----QF-PWTSS 357 (502)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 357 (502)
+++.+..+|...|++++|+..|++..+.. . .....++..+..+|...|++++|.+.+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 34444555555555555555555444310 0 001124555555566666666666666555441 11 22344
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEG----MKADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYN 430 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 430 (502)
++..+...+...|++++|...+++..+.. -......+..+...+...|+ +++|+.+++.... .+.....+.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~ 343 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHH
Confidence 55666666666666666666666554321 01111234556666666676 5555555554311 122234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 431 AVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
.+...|...|++++|.+.|++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677777778888888877777654
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=2e-13 Score=130.34 Aligned_cols=312 Identities=13% Similarity=0.049 Sum_probs=214.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740 148 MKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI---DEAFVTLNQMKTLPNCQPDVYTYSTLIKA 224 (502)
Q Consensus 148 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 224 (502)
..+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|+++|++..+. +...+..|...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHH
Confidence 346777888999999999999998876 334455666677778888 9999999998752 55566667775
Q ss_pred HHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010740 225 CVDAM-----RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF---DQMERVLSGMLESATCKPDVWTMNTILSVF 296 (502)
Q Consensus 225 ~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (502)
+...+ ++++|...|++..+.|... .+..|...|...+.. .++.+.+....+. .+...+..+...|
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLY 151 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 55555 7899999999999876542 566677777665543 3455555555433 2345667777888
Q ss_pred HhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 010740 297 ANKGQVDM----MERWYEKFRNFGIDPETRTFNILIGAYGKKR---MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM 369 (502)
Q Consensus 297 ~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (502)
...+.+++ +..+++.... .+...+..|...|...| +.++|.+.|....+.+.. +...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCG
T ss_pred HcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCC
Confidence 88775544 4444444432 23337888888999999 999999999999998865 666667777777655
Q ss_pred ----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC--
Q 010740 370 ----GDAKHMEYTFEQMHAEGMKADTKTFCCLING-Y--ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD-- 440 (502)
Q Consensus 370 ----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 440 (502)
+++++|.+.|++.. .| +...+..|... + ...+++++|.++|++..+.| +...+..|...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 79999999999988 43 45566667766 4 46899999999999999876 6677778888887 55
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHhh
Q 010740 441 ---DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK----EGMNDKVYALEQEKLQML 491 (502)
Q Consensus 441 ---~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 491 (502)
++++|.++|++.. .| +...+..|...|.. ..+.++|+++|+++.+.+
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 9999999999988 43 77888888888876 348999999999998864
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=4.5e-13 Score=128.73 Aligned_cols=213 Identities=8% Similarity=-0.068 Sum_probs=119.1
Q ss_pred cHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010740 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP-ELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201 (502)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 201 (502)
.++++++.++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|...|++++|++.
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3555556665555432 34555666666666666666 66666666666553 33456666666666666666666666
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------C
Q 010740 202 LNQMKTLPNCQPDVYTYSTLIKACVDA---------MRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA--------G 264 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------g 264 (502)
|++..+. .|+...+..+..++... |++++|++.|++..+.... +...|..+..+|... |
T Consensus 160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 6666653 34555566666666666 6666666666665554322 455555555555555 5
Q ss_pred ChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010740 265 MFDQMERVLSGMLESAT-CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV 343 (502)
Q Consensus 265 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 343 (502)
++++|++.|++.++... ...+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655554310 00245555555555555555555555555555433 33344455555555555555555443
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=4.3e-12 Score=105.29 Aligned_cols=167 Identities=15% Similarity=0.068 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 010740 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (502)
+...|..+...|...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44556666666666666666666666666543 445566666666666677777777766666665444 5566666666
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME 444 (502)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (502)
.+...++++.+...+.+..+.. +-+...+..+...+...|++++|++.++++.+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6667777777777777766543 2345666677777777777777777777777654 4566677777777777777777
Q ss_pred HHHHHHHHHHC
Q 010740 445 MERVYKRMKEK 455 (502)
Q Consensus 445 a~~~~~~~~~~ 455 (502)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777764
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=1.2e-11 Score=111.87 Aligned_cols=220 Identities=8% Similarity=0.001 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 125 FQALQVFEMLKEQPFYQPKEGTYMKLLVLLGK-------SGQP-------ELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
++|+.+|+.+.... +.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 68888888887753 5677788888877753 4775 788888888887311445667888888888
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCChHH
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPDVY-TYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG-KAGMFDQ 268 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~ 268 (502)
..|++++|.++|+++.+.. +.+.. .|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887642 22333 677778888888888888888888777543 24444544333322 2577777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCcHHHHHHHHH
Q 010740 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG-IDP--ETRTFNILIGAYGKKRMYDKMSSVME 345 (502)
Q Consensus 269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 345 (502)
|.++|+..++.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.+.|..+++
T Consensus 188 A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777776542 2355666667777777777777777777776642 233 34556666666666677777777766
Q ss_pred HHHHcC
Q 010740 346 YMRKLQ 351 (502)
Q Consensus 346 ~~~~~~ 351 (502)
++.+..
T Consensus 266 ~a~~~~ 271 (308)
T 2ond_A 266 RRFTAF 271 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 666553
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.4e-13 Score=124.87 Aligned_cols=249 Identities=14% Similarity=0.154 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC
Q 010740 215 VYTYSTLIKACVDAMRFELIETLYQDMDER-------SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES------AT 281 (502)
Q Consensus 215 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~ 281 (502)
..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|.+.+++.++. ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555555555555555555555555441 11223344555555555666666666655555432 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc----
Q 010740 282 CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF------GI-DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL---- 350 (502)
Q Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 350 (502)
.......+..+...+...|++++|...++++.+. +. +.....+..+...|...|++++|.++++.+.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1112344555555566666666666666555432 11 112334555555555666666666665555443
Q ss_pred --CCC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 351 --QFP-WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG-------MKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 351 --~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
+.. ....++..+...+...|++++|.+.++++.+.. ..+......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------------------- 241 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW------------------------- 241 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH-------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH-------------------------
Confidence 101 122345555555555566666665555554320 000000000
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
.....+..+...+...+.+.++...++...... ..+..++..+..+|.+.|++++|.+.++++++..+
T Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 242 ---MHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---HHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 011222333334445556666666666665431 12455677777788888888888888888777654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.1e-12 Score=126.03 Aligned_cols=214 Identities=8% Similarity=-0.063 Sum_probs=173.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010740 159 QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI-DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETL 237 (502)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 237 (502)
.++++...++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3677777888776553 45788899999999999999 99999999988753 56688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------C
Q 010740 238 YQDMDERSVTPNTVTQNIVLGGYGKA---------GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK--------G 300 (502)
Q Consensus 238 ~~~~~~~g~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g 300 (502)
|++..+.. |+...+..+...|... |++++|++.|++.++.. +.+...|..+..+|... |
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 99988864 5678888888899988 99999999999987753 34577888888888888 8
Q ss_pred CHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHH
Q 010740 301 QVDMMERWYEKFRNFGID---PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEY 377 (502)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 377 (502)
++++|+..|++..+.. + .+...+..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|.+
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888753 3 46778888888888888888888888888877654 66777788888888888887776
Q ss_pred HHHH
Q 010740 378 TFEQ 381 (502)
Q Consensus 378 ~~~~ 381 (502)
.+.+
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 5544
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=9.6e-14 Score=125.88 Aligned_cols=171 Identities=16% Similarity=0.144 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcC------CC
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEE-------GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL------PN 210 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~ 210 (502)
..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|+..+++..+. ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666666666666666666552 11223455666666666666666666666665432 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc----
Q 010740 211 CQPDVYTYSTLIKACVDAMRFELIETLYQDMDER------SV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES---- 279 (502)
Q Consensus 211 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 279 (502)
.+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|.+.++++++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1223445666666666777777777766666543 11 123345666666777777777777777766543
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 280 --ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 280 --~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
.........+..+..++...|++++|...++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 10111234566666777777777777777766654
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=2.9e-11 Score=112.73 Aligned_cols=302 Identities=9% Similarity=-0.048 Sum_probs=189.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHH
Q 010740 182 YTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV----YTYSTLIKACVDAMRFELIETLYQDMDERSV-TPN----TVT 252 (502)
Q Consensus 182 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~ 252 (502)
+......+...|++++|...+++...... ..+. ..++.+...+...|++++|...+++...... ..+ ..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455667778999999999888776421 1222 2456667778888999999888888765311 112 123
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHH
Q 010740 253 QNIVLGGYGKAGMFDQMERVLSGMLESA---TCK--P-DVWTMNTILSVFANKGQVDMMERWYEKFRNFGID----PETR 322 (502)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~ 322 (502)
+..+...+...|++++|...+++.++.. +.. | ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5567777888889998888888876532 111 2 2345566777888888888888888887753221 1234
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-hHHHH-----HHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHHH
Q 010740 323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT-SSTYN-----NVIEAFSDMGDAKHMEYTFEQMHAEGMKA---DTKT 393 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~ 393 (502)
++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566777778888888888888887765422211 11121 22334667888888888887776543211 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKL----QIAENV-SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT 468 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 468 (502)
+..+...+...|++++|...++..... +..++. .++..+..++...|+.++|...+++.....- -...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~------~~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN------RTGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HHCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc------cccHH
Confidence 566677778888888888888766543 211122 2555667777788888888888887765310 01122
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 469 EAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
..+...| +....++++..+..+
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHcc--HHHHHHHHHHHhCCC
Confidence 3444555 566667776666544
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=1.2e-11 Score=115.49 Aligned_cols=232 Identities=9% Similarity=0.028 Sum_probs=166.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C---C-CCHHHHH
Q 010740 256 VLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWYEKFRNFG--I---D-PETRTFN 325 (502)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 325 (502)
....+...|++++|...|++.++...-.++ ...+..+...|...|++++|...+++..+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344566788888888888887643221233 3467778888888888888888888776521 1 1 1245677
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcC----CC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----cCCCCCHHHHH
Q 010740 326 ILIGAYGKKRMYDKMSSVMEYMRKLQ----FP-WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA-----EGMKADTKTFC 395 (502)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 395 (502)
.+..+|...|++++|.+.+.+..+.. .. ....++..+..+|...|++++|...|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 78888888899999988888776531 11 1234677888889999999999999988876 32 22366788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010740 396 CLINGYANAGLFHKVISSVRLASKLQI----AENVSFYNAVISACIKADD---LMEMERVYKRMKEKHCRPD-SETFSIM 467 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~g~~p~-~~~~~~l 467 (502)
.+...+...|++++|...++...+... +.....+..+...+...|+ +.+|+.++++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 899999999999999999998877521 2223445666667777788 77777777663 22222 3466788
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 468 TEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
...|...|++++|.+.++++.+..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999998864
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=1.5e-11 Score=101.80 Aligned_cols=170 Identities=11% Similarity=0.017 Sum_probs=121.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402 (502)
Q Consensus 323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 402 (502)
.+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3444555556666666666666655544332 55666666666777777777777777766542 335566777777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 010740 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 482 (502)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7888888888887777653 4567778888888888888888888888888764 2367788888888999999999999
Q ss_pred HHHHHHHhhhhccc
Q 010740 483 LEQEKLQMLLEASG 496 (502)
Q Consensus 483 ~~~~~~~~~~~~~~ 496 (502)
.++++.+..+....
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99998888766543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.45 E-value=3e-11 Score=112.79 Aligned_cols=228 Identities=9% Similarity=0.005 Sum_probs=128.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-----CHHHHHHHH
Q 010740 224 ACVDAMRFELIETLYQDMDERSV-TP----NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP-----DVWTMNTIL 293 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~ 293 (502)
.+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++.++...-.+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455566666666555543210 01 123455555566666666666666655543211111 133455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHH-----cCCCCChHHHHHHH
Q 010740 294 SVFANKGQVDMMERWYEKFRNF----GID-PETRTFNILIGAYGKKRMYDKMSSVMEYMRK-----LQFPWTSSTYNNVI 363 (502)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 363 (502)
.+|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|.+.+.+..+ .... ...++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHH
Confidence 6666666666666666655542 101 1123556666667777777777777776655 3222 355666777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740 364 EAFSDMGDAKHMEYTFEQMHAEGM---KAD-TKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYNAVISAC 436 (502)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (502)
..+.+.|++++|...+++..+... .+. ...+..+...+...++ +++|+..++... ..+.....+..+...|
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHH
Confidence 777777777777777777665321 111 2344555555666666 566666555421 1122234566778888
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 010740 437 IKADDLMEMERVYKRMKE 454 (502)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~ 454 (502)
...|++++|.+.|++..+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888887764
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=1.4e-09 Score=107.54 Aligned_cols=360 Identities=10% Similarity=0.015 Sum_probs=210.8
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---HHHHHHHH
Q 010740 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL---IDEAFVTL 202 (502)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 202 (502)
+.+..|+...... +-|...|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|. ++.+.++|
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3344444444443 678999999999999999999999999999987 47788899999999889998 99999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHhc---------
Q 010740 203 NQMKTLPNCQPDVYTYSTLIKACVDAMRF--------ELIETLYQDMDE-RSV-TPN-TVTQNIVLGGYGK--------- 262 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~~~~--------- 262 (502)
++.......+|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99987421138999999888877666553 334577777554 465 444 5688877765432
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHH---HHHHHH----------HhcCCHHHHHHHHHH------------------
Q 010740 263 AGMFDQMERVLSGMLESATCKPDVWTMN---TILSVF----------ANKGQVDMMERWYEK------------------ 311 (502)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~----------~~~g~~~~a~~~~~~------------------ 311 (502)
.++++.+..+|+..+.. +...-..+|. .+...+ -...+++.|...+.+
T Consensus 207 q~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 33567788888887642 1111112221 111110 000112223333322
Q ss_pred -------------------------------------------------HHhCCCCCCHHHHHHHHHHHHccCcHHHHH-
Q 010740 312 -------------------------------------------------FRNFGIDPETRTFNILIGAYGKKRMYDKMS- 341 (502)
Q Consensus 312 -------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~- 341 (502)
++.. .+-....|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 2221 1122223333333334445555664
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHH
Q 010740 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG---------MKAD------------TKTFCCLING 400 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~l~~~ 400 (502)
++|+...... +.+...|-..+....+.|+++.|.++|+.+.... -.|+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 6666666532 2355555666666666677777777776665421 0121 2245555565
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 010740 401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479 (502)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 479 (502)
..+.|+.+.|..+|..+.+........+|...+..-.+. ++.+.|.++|+...+. +.-+...|...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 566666777777776666541111223333222222233 3466777777766665 33355566666666666677777
Q ss_pred HHHHHHHHHHhhh
Q 010740 480 VYALEQEKLQMLL 492 (502)
Q Consensus 480 A~~~~~~~~~~~~ 492 (502)
|..+|++++...+
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 7777777666554
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=1.1e-11 Score=123.80 Aligned_cols=169 Identities=5% Similarity=0.015 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING 400 (502)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 400 (502)
...++.|...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++.++.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455666666666666666666666666665444 56666666777777777777777777666642 1235566777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 010740 401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKV 480 (502)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 480 (502)
|...|++++|++.|+++.+.. +.+...|+.+..+|.+.|++++|++.|++..+.... +...|..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777776654 445667777777777777777777777777765322 466777777777777777777
Q ss_pred HHHHHHHHHhhhh
Q 010740 481 YALEQEKLQMLLE 493 (502)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (502)
.+.++++++..++
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 7777777776544
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=2.3e-10 Score=106.57 Aligned_cols=271 Identities=11% Similarity=0.026 Sum_probs=127.5
Q ss_pred HHHhhhcHHHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQPFYQPKEG----TYMKLLVLLGKSGQPELARKVFNEMVEEGI-EPTP----ELYTALLA 187 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~ 187 (502)
.+...|++++|+..++....... ..+.. +++.+...+...|++++|...+++.....- ..+. .++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34456777777777776655421 11111 345555666666777777766666554210 0111 22344555
Q ss_pred HHHhCCCHHHHHHHHHHhhcCC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010740 188 AYCRNSLIDEAFVTLNQMKTLP---NCQ--P-DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261 (502)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 261 (502)
.+...|++++|...+++..+.. +.. | ....+..+...+...|++++|...+++.........
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------ 169 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ------------ 169 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC------------
Confidence 5556666666666665544310 000 1 122334444455555555555555555443211100
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHccC
Q 010740 262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE--TRTFN----ILIGAYGKKR 335 (502)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g 335 (502)
.......+..+...+...|++++|...+++.......++ ..... ..+..+...|
T Consensus 170 --------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 170 --------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp --------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred --------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 000122333444444444455544444444432110100 01110 1122244455
Q ss_pred cHHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCh
Q 010740 336 MYDKMSSVMEYMRKLQFPW---TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE----GMKADT-KTFCCLINGYANAGLF 407 (502)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~ 407 (502)
++++|...+.......... ....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 5555555555444322111 0123445556666667777776666665432 111122 2455566777788888
Q ss_pred HHHHHHHHHHHhc
Q 010740 408 HKVISSVRLASKL 420 (502)
Q Consensus 408 ~~a~~~~~~~~~~ 420 (502)
++|...++.....
T Consensus 310 ~~A~~~l~~al~~ 322 (373)
T 1hz4_A 310 SDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776553
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=6.8e-11 Score=97.85 Aligned_cols=156 Identities=12% Similarity=0.059 Sum_probs=76.1
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 334444555555555555554432 3344455555555555555555555555555442 3344455555555555555
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (502)
+++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 92 ~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 92 YDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555554442 13344444444455555555555555555544432 1133444444444444444444444444
Q ss_pred HH
Q 010740 275 GM 276 (502)
Q Consensus 275 ~~ 276 (502)
+.
T Consensus 169 ~~ 170 (186)
T 3as5_A 169 KA 170 (186)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=4.7e-11 Score=119.35 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 010740 286 VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365 (502)
Q Consensus 286 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (502)
..+++.+..+|.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445555555555555555555555555432 333455555555555555555555555555555433 45555555666
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 010740 366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM 445 (502)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 445 (502)
+...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|+++.+.. +.+...|..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 666666666666666555542 1234455666666666666666666666665543 33455566666666666666666
Q ss_pred HHHHHHHH
Q 010740 446 ERVYKRMK 453 (502)
Q Consensus 446 ~~~~~~~~ 453 (502)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=8.2e-11 Score=101.26 Aligned_cols=202 Identities=9% Similarity=0.063 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 010740 284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI 363 (502)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (502)
.+...+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.++...+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4668888899999999999999999999998763377788888999999999999999999999987665 778899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--ChHHHHHHHH
Q 010740 364 EAFSDMGDAKHMEYTFEQMHAEGMKADT-------KTFCCLINGYANAGLFHKVISSVRLASKLQIAE--NVSFYNAVIS 434 (502)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 434 (502)
.++...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.++.+.+.. +. +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999998863 2234 457788888899999999999999998863 33 4677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
+|...| ..+++++...+. .+...|.... ....+.+++|+..++++++..|++..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 876544 444566665532 2444554433 34567789999999999999887654
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=1.6e-11 Score=109.29 Aligned_cols=230 Identities=15% Similarity=0.124 Sum_probs=161.0
Q ss_pred HhccCChHHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHH
Q 010740 260 YGKAGMFDQMERVLSGMLESA------TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF------GI-DPETRTFNI 326 (502)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 326 (502)
....|++++|+..+++.++.. .......++..+...|...|++++|...++++.+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345678888888887775421 11224567888999999999999999999998764 21 234567889
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcC-------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc------CCCC-CHH
Q 010740 327 LIGAYGKKRMYDKMSSVMEYMRKLQ-------FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE------GMKA-DTK 392 (502)
Q Consensus 327 l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~ 392 (502)
+...|...|++++|.+.+.++.+.. .+.....+..+...+...|++++|...++++.+. +-.| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999887651 1224677888999999999999999999998865 1122 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCC-ChHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCC
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKL-------QIAE-NVSFYNAVISACIKADDLM------EMERVYKRMKEKHCR 458 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~g~~ 458 (502)
++..+...|...|++++|..+++.+.+. ...+ ....|..+...+...+... .+...++..... ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence 7888999999999999999999988764 1122 2333444444444333322 222222222111 11
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 459 PDSETFSIMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
....++..+...|...|++++|.++++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 13457888999999999999999999998864
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=3.9e-10 Score=96.97 Aligned_cols=206 Identities=11% Similarity=0.013 Sum_probs=160.6
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010740 248 PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNIL 327 (502)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (502)
.|...+......+...|++++|.+.|++.++... .++...+..+..++...|++++|+..|++..+.. +.+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 3668888999999999999999999999987632 2677888889999999999999999999999865 5567889999
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HHHHHHH
Q 010740 328 IGAYGKKRMYDKMSSVMEYMRKLQFPWTS-------STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD---TKTFCCL 397 (502)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l 397 (502)
..+|...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999987654 55 55888888999999999999999999875 565 4577777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740 398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM 467 (502)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 467 (502)
..+|...| ..+++.+...+ ..+...|.... ....+.+++|+..|++..+.... +..+...+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 77776544 44455555553 33444454443 34557789999999999986422 34444433
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=2.4e-11 Score=108.18 Aligned_cols=132 Identities=8% Similarity=0.036 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CC
Q 010740 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKL------Q-FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE-------GM 387 (502)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~ 387 (502)
.++..+...|...|++++|...++++.+. . .+....++..+...+...|++++|..++++..+. ..
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34445555555555555555555554443 0 1112344555556666666666666666655542 01
Q ss_pred CCC-HHHHHHHHHHHHhcCChH------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 388 KAD-TKTFCCLINGYANAGLFH------KVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 388 ~p~-~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
.+. ...+..+...+...+... .+...++.... ..+....++..+..+|...|++++|..+|++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 112222222222222222 22221111111 1122345677788888888888888888888765
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=1.3e-09 Score=84.72 Aligned_cols=133 Identities=19% Similarity=0.224 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (502)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+.... +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45666777777788888888887777653 2356667777777888888888888888777764 455667778888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
..|++++|.++++++.+... .+...+..+...+.+.|++++|.+.++++++..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888877632 35777888888888888888888888888876653
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=3.1e-10 Score=101.59 Aligned_cols=212 Identities=9% Similarity=0.049 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCcHHH
Q 010740 265 MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF----GIDPE-TRTFNILIGAYGKKRMYDK 339 (502)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~ 339 (502)
++++|...|++. ...|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366666666655 23456677777777777766542 21111 4567777777777777777
Q ss_pred HHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChH
Q 010740 340 MSSVMEYMRKLQFPW-T----SSTYNNVIEAFSDM-GDAKHMEYTFEQMHAEGMK-AD----TKTFCCLINGYANAGLFH 408 (502)
Q Consensus 340 a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~ 408 (502)
|+..+++..+..... + ..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 777777665532110 1 34677777778775 8888888888877653110 01 345777788888888888
Q ss_pred HHHHHHHHHHhcCCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hc
Q 010740 409 KVISSVRLASKLQIAENV------SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS------ETFSIMTEAYA--KE 474 (502)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~------~~~~~l~~~~~--~~ 474 (502)
+|+..++.+.+....... ..|..+..++...|++++|+..|++..+. .|+. ..+..++.+|. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 888888887775422221 14566777788888888888888887753 2321 12344555554 45
Q ss_pred CCcHHHHHHHHHHHHhhhhc
Q 010740 475 GMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~~ 494 (502)
+++++|++.|+++....+..
T Consensus 254 ~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp TTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHhccCCccHHHH
Confidence 66778888877766655443
No 89
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=2e-08 Score=89.06 Aligned_cols=161 Identities=7% Similarity=0.001 Sum_probs=78.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 010740 335 RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAK--HMEYTFEQMHAEGMKADTKTFCCLINGYANAGL------ 406 (502)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------ 406 (502)
+++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ +++++++++.+... -|...|+.....+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 3445555555555544433 4445544444444445444 55555555554432 233444444444444443
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCcHHHHHH
Q 010740 407 FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME-MERVYKRMKEKH--CRPDSETFSIMTEAYAKEGMNDKVYAL 483 (502)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (502)
++++++.++.+.... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..++.+|.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 555555555555543 4455555555555555554322 333444443322 012455555566666666666666666
Q ss_pred HHHHHH-hhhhccccc
Q 010740 484 EQEKLQ-MLLEASGHW 498 (502)
Q Consensus 484 ~~~~~~-~~~~~~~~~ 498 (502)
++++.+ ..|-..+-|
T Consensus 281 ~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHTTCGGGHHHH
T ss_pred HHHHHhccChHHHHHH
Confidence 666554 344444433
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.2e-08 Score=89.48 Aligned_cols=244 Identities=11% Similarity=0.011 Sum_probs=133.8
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
++...-.|++..++.-...+.. ........-+.+++...|+++.. ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~----~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK----VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC----CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 4444556888888774333221 11223444455777777776531 11133333433333322 222
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCChHHHHHHH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV-TPNTVTQNIVLGGYGKAGMFDQMERVL 273 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 273 (502)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 667777766532 45555556677777777777777777777766543 225566667777777777777777777
Q ss_pred HHHHHcCCCCC-----CHHHHHHHHHHHH--h--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010740 274 SGMLESATCKP-----DVWTMNTILSVFA--N--KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM 344 (502)
Q Consensus 274 ~~~~~~~~~~~-----~~~~~~~l~~~~~--~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (502)
+.|.+. .| +..+...+..++. . .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.+
T Consensus 160 ~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 160 DNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 777543 34 2344444444422 2 23677777777776543 344333334444666667777776666
Q ss_pred HHHHHcC---------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740 345 EYMRKLQ---------FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE 385 (502)
Q Consensus 345 ~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 385 (502)
+.+.+.. -+-+..+...+|......|+ +|.+++.++++.
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6554421 01244455444444444554 555666665553
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=2e-09 Score=94.60 Aligned_cols=190 Identities=11% Similarity=0.039 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CChHH
Q 010740 284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE---TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP--WTSST 358 (502)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~ 358 (502)
.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|...|+.+.+.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356667777778888888888888888887653 333 567777778888888888888888888776432 12345
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHH
Q 010740 359 YNNVIEAFSD--------MGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFY 429 (502)
Q Consensus 359 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 429 (502)
+..+..++.. .|++++|...|+++.+.. |+. .....+.. +..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 6666777777 788888888888877653 322 11111100 0000000 00113
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHHhhhhc
Q 010740 430 NAVISACIKADDLMEMERVYKRMKEKHCRP--DSETFSIMTEAYAKE----------GMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 494 (502)
..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|+..++++++..|++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 455666777777777777777776643211 234566666666655 66777777777777766554
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=6.4e-07 Score=85.85 Aligned_cols=348 Identities=10% Similarity=0.001 Sum_probs=226.5
Q ss_pred hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hCCC
Q 010740 122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ-PELARKVFNEMVEE-GI-EPTPELYTALLAAYC----RNSL 194 (502)
Q Consensus 122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~ 194 (502)
|+++.+..+|+..... .|+...|...+....+.++ .+....+|+..+.. |. ..+...|...+..+. .+|+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 8999999999999884 5799999999988887774 46678889887764 42 347788888887654 3467
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD-------------AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 261 (502)
.+.+..+|++....+ ...-...|......-.. .+.+..|..+++.+...-...+...|...+..-.
T Consensus 105 ~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 105 IEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 889999999998742 11112233322221111 1223334444444432100013446666665433
Q ss_pred ccC--C-----hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 010740 262 KAG--M-----FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK 334 (502)
Q Consensus 262 ~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (502)
..+ - .+.+..+|++++... +.+...|...+..+...|+.++|..+|++.... +.+...+.. |...
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLV 255 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHH
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhh
Confidence 221 1 345678899988753 445778888888888999999999999999986 444333322 2221
Q ss_pred CcHHHHHHHHHHHHHcCC------------CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 335 RMYDKMSSVMEYMRKLQF------------PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA 402 (502)
Q Consensus 335 g~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 402 (502)
.+.++. ++.+.+.-. ......|...+....+.++.+.|..+|++. .. ...+...|......-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHH
Confidence 111111 222222100 011245677777777788899999999999 32 1234445543332222
Q ss_pred h-cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 010740 403 N-AGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY 481 (502)
Q Consensus 403 ~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 481 (502)
. .++.+.|..+|+...+.- +.+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 336999999999988763 4445667778888889999999999999973 25788999998888899999999
Q ss_pred HHHHHHHHhhh
Q 010740 482 ALEQEKLQMLL 492 (502)
Q Consensus 482 ~~~~~~~~~~~ 492 (502)
++++++.+...
T Consensus 405 ~v~~~~~~~~~ 415 (493)
T 2uy1_A 405 ELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999987543
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=1.3e-08 Score=89.30 Aligned_cols=247 Identities=9% Similarity=0.026 Sum_probs=169.8
Q ss_pred HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010740 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM 265 (502)
Q Consensus 186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 265 (502)
++-..-.|.+..++.-..++... .++ ..-..+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~---~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKV---TDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCC---CCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCcc---chH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 45566789999999855554331 222 3344456788888877642 12334444555555444 322
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010740 266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGI-DPETRTFNILIGAYGKKRMYDKMSSVM 344 (502)
Q Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 344 (502)
|+..|++.++.. .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677788776542 45666667888999999999999999998876553 246777888899999999999999999
Q ss_pred HHHHHcCC---CCChHHHHHHHHHHH--hcC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740 345 EYMRKLQF---PWTSSTYNNVIEAFS--DMG--DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLA 417 (502)
Q Consensus 345 ~~~~~~~~---~~~~~~~~~l~~~~~--~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 417 (502)
+.|.+... ..+..+...++.++. ..| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99987622 002455666666633 334 899999999998764 465444445555888999999999999876
Q ss_pred HhcC---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 418 SKLQ---------IAENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 418 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
.+.- -+.+..++..+|......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6531 14567777566666666776 8889999998853
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.16 E-value=1.9e-09 Score=91.01 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHcC
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMK----------------LLVLLGKSGQPELARKVFNEMVEEG 174 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~ 174 (502)
+......+...|++++|+..|+.+.+.. +.+...|.. +..++.+.|++++|...|++.++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3334455667899999999998887753 333445555 5566666666666666666665553
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 010740 175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR--FELIETLYQDMDERSVTPNTVT 252 (502)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~ 252 (502)
+-+...+..+..++...|++++|+..|++..+.. +.+..++..+..++...|+ .+.+...++.... ..|....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 3445556666666666666666666666655532 3445555555555544332 2233333333321 1222222
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 010740 253 QNIVLGGYGKAGMFDQMERVLSGMLE 278 (502)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 278 (502)
+.....++...|++++|...|++.++
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 23333344445555555555555543
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=3.7e-09 Score=94.58 Aligned_cols=208 Identities=11% Similarity=-0.015 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 010740 230 RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA---TCKP-DVWTMNTILSVFANKGQVDMM 305 (502)
Q Consensus 230 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a 305 (502)
++++|...|.+. ...|...|++++|.+.|.+.++-. +..+ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477787777775 345677888898888888775431 1111 145788888889999999999
Q ss_pred HHHHHHHHhCCC---CC--CHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhcCCHhH
Q 010740 306 ERWYEKFRNFGI---DP--ETRTFNILIGAYGKK-RMYDKMSSVMEYMRKLQFPW-T----SSTYNNVIEAFSDMGDAKH 374 (502)
Q Consensus 306 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 374 (502)
+..|++..+... .+ ...++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 988888765311 11 135778888888886 99999999999887653211 1 3568888999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------hHHHHHHHHHHH--HcC
Q 010740 375 MEYTFEQMHAEGMKADT------KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN------VSFYNAVISACI--KAD 440 (502)
Q Consensus 375 a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~g 440 (502)
|+..|++..+....... ..|..+..++...|++++|...++...+. .|+ ...+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999876433221 25677888899999999999999988764 232 123445566664 456
Q ss_pred CHHHHHHHHHHHHH
Q 010740 441 DLMEMERVYKRMKE 454 (502)
Q Consensus 441 ~~~~a~~~~~~~~~ 454 (502)
++++|+..|+.+..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 78888888877654
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=1.2e-08 Score=89.65 Aligned_cols=102 Identities=11% Similarity=-0.009 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCC-CCCCHHH
Q 010740 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT---PELYTALLAAYCRNSLIDEAFVTLNQMKTLPN-CQPDVYT 217 (502)
Q Consensus 142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ 217 (502)
.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|...|++++|+..|++..+... .+.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666677777777777777777776653 223 55666667777777777777777777665321 1112344
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhC
Q 010740 218 YSTLIKACVD--------AMRFELIETLYQDMDER 244 (502)
Q Consensus 218 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~ 244 (502)
+..+..++.. .|++++|...|+++.+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 5556666666 66666666666666654
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=6.3e-09 Score=87.83 Aligned_cols=135 Identities=14% Similarity=0.029 Sum_probs=77.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740 327 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406 (502)
Q Consensus 327 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 406 (502)
+..+|.+.|++++|...|+...+..+. +...+..+..++...|++++|...|++..+.. +-+...+..+..+|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 666666777777777777777666544 66667777777777777777777777776653 2245566666666654443
Q ss_pred --hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740 407 --FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM 467 (502)
Q Consensus 407 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 467 (502)
.+.+...++.... ..|....+.....++...|++++|+..|++..+. .|+......+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 2333444433321 1222223334455556667777777777777763 4565444333
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=4.9e-09 Score=81.28 Aligned_cols=127 Identities=18% Similarity=0.142 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 010740 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACV 226 (502)
Q Consensus 147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 226 (502)
|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|..+++++.... +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 3444444444455555555555444432 2334444444444444445555554444444321 233334444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740 227 DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (502)
..|++++|.+.++++.+... .+...+..+...+...|++++|.+.+++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444443321 133344444444444444444444444443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=1.1e-09 Score=110.00 Aligned_cols=173 Identities=9% Similarity=-0.150 Sum_probs=138.2
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740 297 ANKGQVDMMERWYEKFR--------NFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368 (502)
Q Consensus 297 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (502)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|.+.|+.+.+.+.. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67889999999999887 432 556678888888899999999999999998887665 77888888999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 010740 369 MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV 448 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 448 (502)
.|++++|.+.|++..+.. +-+...+..+..++...|++++ ++.|+.+.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988763 2255778888889999999999 99999888865 55778888899999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 010740 449 YKRMKEKHCRPD-SETFSIMTEAYAKEGM 476 (502)
Q Consensus 449 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 476 (502)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988875 344 5577777777766555
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=2e-07 Score=82.71 Aligned_cols=152 Identities=10% Similarity=-0.043 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc-----
Q 010740 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD--MMERWYEKFRNFGIDPETRTFNILIGAYGKKRM----- 336 (502)
Q Consensus 264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 336 (502)
+++++++++++.+++.. +.+..+|+.-.-++.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 34555555555555432 234444544444444455444 5555555555443 3444445444444444443
Q ss_pred -HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 010740 337 -YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH-MEYTFEQMHAEG--MKADTKTFCCLINGYANAGLFHKVIS 412 (502)
Q Consensus 337 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 412 (502)
++++++.++.+....+. |...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 55666666666665554 66666666665555555322 333444433221 12234444555555555555555555
Q ss_pred HHHHHHh
Q 010740 413 SVRLASK 419 (502)
Q Consensus 413 ~~~~~~~ 419 (502)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=9.8e-10 Score=110.35 Aligned_cols=173 Identities=11% Similarity=-0.067 Sum_probs=125.0
Q ss_pred HhhhcHHHHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 119 VLKKQWFQALQVFEMLK--------EQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 119 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
...|++++|++.|+.+. +.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 56788888888888877 432 4456678888888888888888888888887764 456778888888888
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME 270 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~ 270 (502)
..|++++|++.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888877643 4566777788888888888888 8888887776433 6677777888888888888888
Q ss_pred HHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010740 271 RVLSGMLESATCKPD-VWTMNTILSVFANKGQ 301 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 301 (502)
+.|++.++. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l---~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT---SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT---STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc---CcccHHHHHHHHHHHHccCC
Confidence 888777543 344 4455556666555443
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=4.8e-09 Score=103.47 Aligned_cols=155 Identities=7% Similarity=-0.092 Sum_probs=115.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 010740 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT 378 (502)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (502)
.|++++|++.|++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999998887654 556788888899999999999999999999887654 778888899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHC
Q 010740 379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA---DDLMEMERVYKRMKEK 455 (502)
Q Consensus 379 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 455 (502)
|++..+.. +.+...+..+..+|...|++++|.+.++.+.+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988764 3356788888999999999999999999888864 55677888888999988 9999999999998886
Q ss_pred CC
Q 010740 456 HC 457 (502)
Q Consensus 456 g~ 457 (502)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=2.7e-09 Score=87.47 Aligned_cols=163 Identities=6% Similarity=-0.024 Sum_probs=112.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 010740 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING-YA 402 (502)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 402 (502)
+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 334455666677777777777766555443 56677777777777777777777777766542 344333222211 12
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHH
Q 010740 403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVY 481 (502)
Q Consensus 403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 481 (502)
..+...+|...++...+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223345677788777754 5567888888999999999999999999988865432 3567888889999999999999
Q ss_pred HHHHHHHHh
Q 010740 482 ALEQEKLQM 490 (502)
Q Consensus 482 ~~~~~~~~~ 490 (502)
..|++++..
T Consensus 165 ~~y~~al~~ 173 (176)
T 2r5s_A 165 SKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=2.2e-08 Score=85.70 Aligned_cols=193 Identities=11% Similarity=-0.031 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh--HHHH
Q 010740 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGID-P-ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS--STYN 360 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 360 (502)
+...+..+...+...|++++|+..|+++...... + ....+..+..+|.+.|++++|...|+.+.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666778888999999999999998874311 1 1357778888999999999999999999887654222 2444
Q ss_pred HHHHHHHh------------------cCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740 361 NVIEAFSD------------------MGDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQ 421 (502)
Q Consensus 361 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 421 (502)
.+..++.. .|++++|...|+++++. .|+.. ........ + .+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----V------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----H------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----H------HHHHHH----
Confidence 45555544 34555555555555543 22211 11110000 0 000000
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccc
Q 010740 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP--DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH 497 (502)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 497 (502)
......+...|.+.|++++|+..|+++.+..... ....+..+..+|.+.|++++|.+.++.+....|....+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0011346677889999999999999999863221 12568889999999999999999999999888776654
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.9e-08 Score=85.05 Aligned_cols=176 Identities=13% Similarity=-0.003 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----CHHHHHHH
Q 010740 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS----LIDEAFVT 201 (502)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 201 (502)
+|++.|+...+.| +..++..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|+++
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4667777777655 67788888888888888888888888887764 56677777777776 5 78888888
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhc----cCChHHHHHH
Q 010740 202 LNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVT-PNTVTQNIVLGGYGK----AGMFDQMERV 272 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~----~g~~~~a~~~ 272 (502)
|++..+. -+...+..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8887663 456667777777766 67788888888887776532 125666677777766 6677888888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 010740 273 LSGMLESATCKPDVWTMNTILSVFANK-G-----QVDMMERWYEKFRNFG 316 (502)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 316 (502)
|++..+. ..+...+..+...|... | ++++|..+|++..+.|
T Consensus 152 ~~~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8777653 12444566666666543 2 6777777777776655
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=8.8e-09 Score=91.74 Aligned_cols=164 Identities=12% Similarity=0.021 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH-HH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST-LI 222 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-ll 222 (502)
...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++... .|+...... ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHH
Confidence 3445555555555666666666666555543 334555555555666666666666666555443 233322221 12
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (502)
..+...++.+.|...+++...... .+...+..+...+...|++++|+..|.++++...-..+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 223444555555555555554422 2455555555555555555555555555554421111234455555555555555
Q ss_pred HHHHHHHHHH
Q 010740 303 DMMERWYEKF 312 (502)
Q Consensus 303 ~~a~~~~~~~ 312 (502)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555555443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=7.4e-09 Score=92.23 Aligned_cols=169 Identities=10% Similarity=0.021 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH-H
Q 010740 318 DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFC-C 396 (502)
Q Consensus 318 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ 396 (502)
+.+...+..+...+...|++++|...|+.+.+.... +...+..+...+...|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 444555666777777788888888888887777655 6777778888888888888888888877654 34544322 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 010740 397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEG 475 (502)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g 475 (502)
....+...++.++|...++...... +.+...+..+...+...|++++|+..|+++....... +...+..++..|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2333566777778888888887764 5677888888888888899999999888888764321 2567888888888889
Q ss_pred CcHHHHHHHHHHHHh
Q 010740 476 MNDKVYALEQEKLQM 490 (502)
Q Consensus 476 ~~~~A~~~~~~~~~~ 490 (502)
+.++|...+++.+..
T Consensus 270 ~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 270 TGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 988888888887764
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=4.1e-09 Score=86.34 Aligned_cols=161 Identities=14% Similarity=0.046 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH-H
Q 010740 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA-C 225 (502)
Q Consensus 147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~ 225 (502)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 3344444555555555555555544432 3344555555555555555555555555554421 233222211111 1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740 226 VDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 305 (502)
...+....+...+++..+.... +...+..+...+...|++++|...|+++++...-..+...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1111122234444444433211 344444444444445555555555544443211111223444444444444444444
Q ss_pred HHHHHHH
Q 010740 306 ERWYEKF 312 (502)
Q Consensus 306 ~~~~~~~ 312 (502)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=3.9e-08 Score=83.18 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----cHHHHHHH
Q 010740 268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKR----MYDKMSSV 343 (502)
Q Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 343 (502)
+|++.|++..+. -+...+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 345555555442 255556666666666666666666666665543 34445555555554 4 55555555
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChHHHHHHH
Q 010740 344 MEYMRKLQFPWTSSTYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMK-ADTKTFCCLINGYAN----AGLFHKVISSV 414 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~ 414 (502)
|+...+.+ +...+..|...|.. .+++++|.+.|++..+.|.. .....+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 55554432 33444444444444 44555555555554443210 013344444444444 44444444444
Q ss_pred HHHHh
Q 010740 415 RLASK 419 (502)
Q Consensus 415 ~~~~~ 419 (502)
+...+
T Consensus 153 ~~A~~ 157 (212)
T 3rjv_A 153 KGSSS 157 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=1.4e-08 Score=100.14 Aligned_cols=154 Identities=12% Similarity=-0.016 Sum_probs=117.6
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 200 (502)
.|++++|++.|+.+.+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999887763 5567889999999999999999999999998875 5568889999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CChHHHHHHHHHHH
Q 010740 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA---GMFDQMERVLSGML 277 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 277 (502)
.|++..+.. +.+...+..+..++...|++++|.+.+++..+... .+...+..+...+... |++++|.+.+++.+
T Consensus 79 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999988753 56788899999999999999999999999888743 3678888899999999 99999999999988
Q ss_pred HcC
Q 010740 278 ESA 280 (502)
Q Consensus 278 ~~~ 280 (502)
+..
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 764
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=2.6e-09 Score=84.86 Aligned_cols=142 Identities=10% Similarity=-0.015 Sum_probs=71.8
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010740 331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKV 410 (502)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 410 (502)
+...|++++|+..+......... +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 34445555555555544432211 23334445555555556666655555555542 22445555555566666666666
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740 411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV-YKRMKEKHCRPDSETFSIMTEAYAKEGM 476 (502)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 476 (502)
+..|+.+.+.. +.+..+|..+...|.+.|++++|.+. +++..+.... ++..|......+...|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 66665555543 33455555566666666665544433 3555543211 44455555555555443
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=3e-09 Score=84.45 Aligned_cols=141 Identities=11% Similarity=-0.025 Sum_probs=97.0
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
+...|++++|+..++...... +-+...+..+...|.+.|++++|.+.|++.++.. +-+..+|..+..+|...|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 345678888888887766542 2234456677788888888888888888887764 4567778888888888888888
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETL-YQDMDERSVTPNTVTQNIVLGGYGKAG 264 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g 264 (502)
|+..|++..+.. +-+..+|..+...+.+.|+++++.+. +++..+.... +..+|......+...|
T Consensus 84 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 888888877642 45677777777788887777655544 4666665322 5566666655555555
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=7.5e-09 Score=93.29 Aligned_cols=225 Identities=10% Similarity=0.023 Sum_probs=157.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010740 228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK-AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME 306 (502)
Q Consensus 228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 306 (502)
.|++++|.+++++..+.... .+.+ .++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 46778888888877654111 1233 57788888777765 34677899999999
Q ss_pred HHHHHHHhC----CCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC---C--ChHHHHHHHHHHHhcCCHhHHH
Q 010740 307 RWYEKFRNF----GID-PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP---W--TSSTYNNVIEAFSDMGDAKHME 376 (502)
Q Consensus 307 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~ 376 (502)
..|.+..+. +-. .-..+|+.+..+|...|++++|...|++..+.... + -..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887653 111 11457888899999999999999999987664211 1 13577888888888 9999999
Q ss_pred HHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC-hHHHHHHHHHHHHcCCHHHHH
Q 010740 377 YTFEQMHAEGMKA-D----TKTFCCLINGYANAGLFHKVISSVRLASKLQ----IAEN-VSFYNAVISACIKADDLMEME 446 (502)
Q Consensus 377 ~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~ 446 (502)
..|++..+..... + ..++..+...|...|++++|+..++++.+.. ..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887542111 1 3578888999999999999999999887742 1111 235667777888889999999
Q ss_pred HHHHHHHHCCCC-CCHH---HHHHHHHHHHhcCCcHHHHH
Q 010740 447 RVYKRMKEKHCR-PDSE---TFSIMTEAYAKEGMNDKVYA 482 (502)
Q Consensus 447 ~~~~~~~~~g~~-p~~~---~~~~l~~~~~~~g~~~~A~~ 482 (502)
..|++.. .... ++.. ....++.++ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999998 4211 1221 334455555 5677666655
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=1.5e-07 Score=80.33 Aligned_cols=205 Identities=11% Similarity=-0.020 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 010740 178 TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP-DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT--VTQN 254 (502)
Q Consensus 178 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~ 254 (502)
+...+..+...+...|++++|+..|+++.+.....+ ....+..+..++.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555566667777777777777777665321111 1345666677777777777777777777664322111 1333
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 010740 255 IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK 334 (502)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (502)
.+..++...+.. .++ .|..+...+...|++++|...|+++++.. +-+..........
T Consensus 83 ~~g~~~~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ-------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----
T ss_pred HHHHHHHhhhhh-----hhh-------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----
Confidence 333333332210 000 11122233345677788888888877642 2222222211110
Q ss_pred CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHH
Q 010740 335 RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD----TKTFCCLINGYANAGLFHKV 410 (502)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a 410 (502)
+ .+...+. .....+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|
T Consensus 140 ~------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 V------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp H------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred H------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 0 0000000 112345667888889999998888888753 33 24677788888899999999
Q ss_pred HHHHHHHHhcC
Q 010740 411 ISSVRLASKLQ 421 (502)
Q Consensus 411 ~~~~~~~~~~~ 421 (502)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 98888877754
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=1.8e-08 Score=90.81 Aligned_cols=229 Identities=7% Similarity=-0.021 Sum_probs=115.4
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 199 (502)
..|++++|.++++...+.. +.. .+...++++.|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888888888766532 111 011135555555555543 23444555666655
Q ss_pred HHHHHhhcCC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCChHHHH
Q 010740 200 VTLNQMKTLP---NCQ-PDVYTYSTLIKACVDAMRFELIETLYQDMDER----SVTP-NTVTQNIVLGGYGKAGMFDQME 270 (502)
Q Consensus 200 ~~~~~~~~~~---~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~a~ 270 (502)
+.|.+..+.. +.. .-..+|+.+..+|...|++++|...|++..+. |-.. -..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 5555443210 000 01234555666666666666666666554432 1110 12455556666666 6666666
Q ss_pred HHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCcHHHHH
Q 010740 271 RVLSGMLESATCKP----DVWTMNTILSVFANKGQVDMMERWYEKFRNF----GIDPE-TRTFNILIGAYGKKRMYDKMS 341 (502)
Q Consensus 271 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~ 341 (502)
..|++.++...-.. ...++..+...|...|++++|+..|++.... +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666543210000 1345666666666677777777666666542 11111 124555555666667777777
Q ss_pred HHHHHHHHcCCCC-Ch---HHHHHHHHHHHhcCCHhHHHH
Q 010740 342 SVMEYMRKLQFPW-TS---STYNNVIEAFSDMGDAKHMEY 377 (502)
Q Consensus 342 ~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~ 377 (502)
..|++.. ..... +. .....++.++ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7776666 43221 11 2233444444 4556555544
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=3.3e-07 Score=81.87 Aligned_cols=164 Identities=12% Similarity=-0.030 Sum_probs=112.9
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCC-CCh----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 010740 328 IGAYGKKRMYDKMSSVMEYMRKLQFP-WTS----STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK-AD----TKTFCCL 397 (502)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l 397 (502)
+..+...|++++|..+++...+.... ++. ..+..+...+...+++++|...|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55566677777777777776664322 111 12333555566667788888888887763221 22 2357788
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc-----CCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 010740 398 INGYANAGLFHKVISSVRLASKL-----QIA-ENVSFYNAVISACIKADDLMEMERVYKRMKEK----HCRPD-SETFSI 466 (502)
Q Consensus 398 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~~~~ 466 (502)
...|...|++++|...++.+.+. +.. ....+|..+...|.+.|++++|+..+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88888888888888888877642 111 12347788889999999999999999887753 22222 668888
Q ss_pred HHHHHHhcCC-cHHHHHHHHHHHHhh
Q 010740 467 MTEAYAKEGM-NDKVYALEQEKLQML 491 (502)
Q Consensus 467 l~~~~~~~g~-~~~A~~~~~~~~~~~ 491 (502)
+..+|.+.|+ +++|.+.+++++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999995 599999999998864
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=1.1e-06 Score=84.35 Aligned_cols=331 Identities=8% Similarity=-0.098 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHH
Q 010740 124 WFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL-IDEAFVTL 202 (502)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~ 202 (502)
.+.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.+. .+....+|
T Consensus 11 i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 11 LSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp -CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred hHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 66666777666553 222 8899999999999985 5899999999888877764 45566777
Q ss_pred HHhhcCCC-CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------------cC
Q 010740 203 NQMKTLPN-CQPDVYTYSTLIKACV----DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK-------------AG 264 (502)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------------~g 264 (502)
+.....-| .+.+...|...+..+. ..++.+.+.++|++.+......-...|......-.. .+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 77665323 2456778888887654 346788899999999874222112233322221111 12
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcH
Q 010740 265 MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG--Q-----VDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY 337 (502)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 337 (502)
.+..|..+++.+..... ..+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|+.
T Consensus 152 ~y~~ar~~y~~~~~~~~-~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIR-GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHHH-TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 23344444444432100 113345555554433221 1 345778999988743 66688888888888899999
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcC
Q 010740 338 DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG---------MKA---DTKTFCCLINGYANAG 405 (502)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~~~~~l~~~~~~~g 405 (502)
+.|..++++.... +.+...|.. |....+.++. ++.+.+.- ..+ ....|...+..+.+.+
T Consensus 230 ~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 230 EKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp HHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 9999999999988 334443332 2222122222 33332210 001 1245666677777788
Q ss_pred ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Q 010740 406 LFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALE 484 (502)
Q Consensus 406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (502)
+.+.|..+|+.+ ... ..+..+|......-... ++.+.|..+|+...+.. .-+...|...++...+.|+.++|..+|
T Consensus 301 ~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 301 GLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp CHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999998 321 23444554333322233 47999999999998863 224666777888888999999999988
Q ss_pred HHH
Q 010740 485 QEK 487 (502)
Q Consensus 485 ~~~ 487 (502)
+++
T Consensus 378 er~ 380 (493)
T 2uy1_A 378 KRL 380 (493)
T ss_dssp HHS
T ss_pred HHH
Confidence 886
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=7.4e-08 Score=81.53 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=71.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403 (502)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 403 (502)
+..+...+...|++++|...|.+.. .++...+..+...+...|++++|...|++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344555556666666666665542 3355566666666666666666666666665542 2244555566666666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 404 AGLFHKVISSVRLASKLQIAENV----------------SFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.|++++|.+.++.+.+.. +.+. ..+..+..+|...|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655542 2222 44555555666666666666666665553
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.89 E-value=8.7e-07 Score=79.39 Aligned_cols=176 Identities=6% Similarity=-0.121 Sum_probs=104.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-C-
Q 010740 224 ACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG-MFDQMERVLSGMLESATCKPDVWTMNTILSVFANK-G- 300 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 300 (502)
.....+..++|+++++.++..+.. +..+|+.--..+...| .+++++++++.++... +.+..+|+.-..++... +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCC
Confidence 334444556777777777766433 5556666666666666 4777777777776542 34556666665555555 5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-
Q 010740 301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD--------KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD- 371 (502)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 371 (502)
++++++++++++.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 6677777777776644 556666665555555555554 666666666666555 66666666666666554
Q ss_pred ------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010740 372 ------AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG 405 (502)
Q Consensus 372 ------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 405 (502)
++++++.+++++... +-|...|+.+-..+.+.|
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 455556665555542 224444544444444444
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=4.4e-08 Score=74.96 Aligned_cols=102 Identities=12% Similarity=-0.002 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740 393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472 (502)
Q Consensus 393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 472 (502)
.+......|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|++++|+..|++..+.+.. +...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 45556666666666666666666666653 445666666666666777777777777666664322 4566666666677
Q ss_pred hcCCcHHHHHHHHHHHHhhhhccc
Q 010740 473 KEGMNDKVYALEQEKLQMLLEASG 496 (502)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~ 496 (502)
..|++++|++.|+++++..|.+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHH
Confidence 777777777777777766665543
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=4.4e-07 Score=81.03 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=39.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 010740 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVW----TMNTILSVFANKGQVDMMERWYEKFRNFGID-PE----TRTFNIL 327 (502)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 327 (502)
+..+...|++++|.+++++..+.....++.. .+..+...+...|++++|+..|++....... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3445555555555555555544322122211 1222334444444555555555555442111 11 1134444
Q ss_pred HHHHHccCcHHHHHHHHHHHH
Q 010740 328 IGAYGKKRMYDKMSSVMEYMR 348 (502)
Q Consensus 328 ~~~~~~~g~~~~a~~~~~~~~ 348 (502)
..+|...|++++|...|+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555544443
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=3e-06 Score=75.93 Aligned_cols=173 Identities=9% Similarity=-0.058 Sum_probs=133.0
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-C-CHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSG-QPELARKVFNEMVEEGIEPTPELYTALLAAYCRN-S-LIDE 197 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 197 (502)
.+..++|+++++.+.... +-+..+|+.--.++...| +++++++.++.++... +-+..+|+.-..++... + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 445678999999998864 556778998888888888 5999999999999875 67788888887777776 7 8899
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE--------LIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM---- 265 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---- 265 (502)
++++++++.+.+ +.|-.+|+.-.-++.+.+.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 999999999853 678888887777766666665 888888888887555 77888887777777765
Q ss_pred ---hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010740 266 ---FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQ 301 (502)
Q Consensus 266 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (502)
++++++.+++.+... +-|...|+.+-..+.+.|.
T Consensus 221 ~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 677888887777653 4466667666655555554
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=3.6e-07 Score=81.62 Aligned_cols=166 Identities=11% Similarity=-0.032 Sum_probs=104.0
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CCC--HHHHH
Q 010740 326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWT-----SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM---KAD--TKTFC 395 (502)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~ 395 (502)
..+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++..+... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455555666666666655554322211 01223344555666777777777777664321 111 34677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc--CCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CHHHH
Q 010740 396 CLINGYANAGLFHKVISSVRLASKL--QIAE----NVSFYNAVISACIKADDLMEMERVYKRMKEKH----CRP-DSETF 464 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~p-~~~~~ 464 (502)
.+...|...|++++|...++++.+. ..+. ...++..+..+|...|++++|+..+++..+.. ... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7778888888888888888776632 1111 12577788888888888888888888776431 111 15677
Q ss_pred HHHHHHHHhcCCcHHH-HHHHHHHHHhh
Q 010740 465 SIMTEAYAKEGMNDKV-YALEQEKLQML 491 (502)
Q Consensus 465 ~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 491 (502)
..+..+|.+.|++++| ...+++++...
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 8888888888999888 77788877653
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=8.7e-08 Score=75.60 Aligned_cols=101 Identities=9% Similarity=-0.003 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471 (502)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 471 (502)
..+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++....... ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 356666777777777777777777777764 556777777777777777777777777777775432 566777777777
Q ss_pred HhcCCcHHHHHHHHHHHHhhhhc
Q 010740 472 AKEGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~~ 494 (502)
.+.|++++|++.|+++++..++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777766543
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=3.1e-07 Score=82.03 Aligned_cols=166 Identities=7% Similarity=0.003 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-
Q 010740 180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV------YTYSTLIKACVDAMRFELIETLYQDMDERSV---TPN- 249 (502)
Q Consensus 180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~- 249 (502)
..+...+..+...|++++|++.+.+..+.. +... ..+..+...+...|++++|...+++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345556677778888888888887766532 2221 1233344555666777777777777664321 111
Q ss_pred -HHHHHHHHHHHhccCChHHHHHHHHHHH---HcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC
Q 010740 250 -TVTQNIVLGGYGKAGMFDQMERVLSGML---ESATCKP--DVWTMNTILSVFANKGQVDMMERWYEKFRNFG----IDP 319 (502)
Q Consensus 250 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~ 319 (502)
..+++.+...|...|++++|...+++.+ +..+..+ ...++..+..+|...|++++|+..+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 3466677777777777777777777765 2211111 11456666667777777777777776655321 111
Q ss_pred -CHHHHHHHHHHHHccCcHHHH-HHHHHHH
Q 010740 320 -ETRTFNILIGAYGKKRMYDKM-SSVMEYM 347 (502)
Q Consensus 320 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~~ 347 (502)
-..+|..+..+|.+.|++++| ...++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 134555666666666666666 4445443
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=3.1e-07 Score=74.02 Aligned_cols=132 Identities=9% Similarity=0.077 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436 (502)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (502)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777778888888888888877653 3356778888888888888888888888888764 55677888888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIM--TEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
...|++++|...|+++.+.... +...+..+ +..+.+.|++++|++.+++.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999999999999988876432 45555433 334778899999999998877764
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2e-07 Score=71.24 Aligned_cols=91 Identities=10% Similarity=-0.040 Sum_probs=50.3
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS 193 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 193 (502)
....+.+.|++++|++.|+.+.+.. +.+...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++...|
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCC
Confidence 3344455566666666665555442 3445555555555555666666666555555543 334555555555555555
Q ss_pred CHHHHHHHHHHhhc
Q 010740 194 LIDEAFVTLNQMKT 207 (502)
Q Consensus 194 ~~~~a~~~~~~~~~ 207 (502)
++++|++.|++..+
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=3.2e-08 Score=78.23 Aligned_cols=98 Identities=7% Similarity=-0.021 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 473 (502)
+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++....... +...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3444444445555555555555444432 334444444555555555555555555555443211 34444445555555
Q ss_pred cCCcHHHHHHHHHHHHhhhh
Q 010740 474 EGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~ 493 (502)
.|++++|++.|+++++..+.
T Consensus 102 ~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHCcC
Confidence 55555555555555554443
No 129
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=4.9e-06 Score=74.22 Aligned_cols=191 Identities=6% Similarity=-0.079 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HhHHHHHH
Q 010740 303 DMMERWYEKFRNFGIDPETRTFNILIGAYGKKR--MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD-AKHMEYTF 379 (502)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 379 (502)
++++.+++.+.... +.+..+|+.-...+.+.+ .+++++.+++.+.+.... |...|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44445554444432 344444444444444444 245555555555554443 45555555444444454 35555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc------
Q 010740 380 EQMHAEGMKADTKTFCCLINGYANA--------------GLFHKVISSVRLASKLQIAENVSFYNAVISACIKA------ 439 (502)
Q Consensus 380 ~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 439 (502)
+.+++.. .-|...|+.....+... +.++++++.+..+.... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 5555443 12334444433333332 33566677776666653 55666666555444444
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHhhhhccccccc
Q 010740 440 -----DDLMEMERVYKRMKEKHCRPDSETFSIMTEA-----YAKEGMNDKVYALEQEKLQMLLEASGHWQQ 500 (502)
Q Consensus 440 -----g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (502)
+.++++++.++++.+. .||. .|..+..+ ....|..+++...+++..+..|...|.|.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence 4577888888888875 4554 34332222 224677888999999999999888888765
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=7.5e-08 Score=80.70 Aligned_cols=138 Identities=11% Similarity=0.029 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC--C
Q 010740 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAE----GMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKL----QIA--E 424 (502)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~ 424 (502)
...+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+. +-. .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444444455555555555555444331 1111 1234555555666666666666666554443 101 1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHC-RPD----SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
...++..+...+...|++++|...+++..+..- ..+ ..++..+...+...|++++|.+.++++++....
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 133455666666667777777766666553200 011 223456666677777777777777777765433
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=6.1e-07 Score=75.77 Aligned_cols=125 Identities=13% Similarity=0.080 Sum_probs=103.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS 193 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 193 (502)
....+...|++++|+..|+.+. .|+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 4445667899999999998773 4577899999999999999999999999998875 567888999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010740 194 LIDEAFVTLNQMKTLPNCQPD----------------VYTYSTLIKACVDAMRFELIETLYQDMDERSV 246 (502)
Q Consensus 194 ~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 246 (502)
++++|++.|++..+.. +.+ ...+..+..++...|++++|...|+...+...
T Consensus 86 ~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp CHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999987742 222 26788888899999999999999999887643
No 132
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.77 E-value=2.7e-05 Score=69.47 Aligned_cols=188 Identities=5% Similarity=-0.088 Sum_probs=128.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhcHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHH
Q 010740 101 KAKAKAWVNTVAETFSDHVLKKQWF-QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ----------PELARKVFNE 169 (502)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~ 169 (502)
......+ ..+...+......|.++ +|+.+++.+.... +-+..+|+.--..+...+. +++++.+++.
T Consensus 23 ~~ki~~y-~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~ 99 (331)
T 3dss_A 23 EQKLKLY-QSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLES 99 (331)
T ss_dssp HHHHHHH-HHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence 3444444 33333444455566655 8999999999864 4556677765555544433 6788889988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCC
Q 010740 170 MVEEGIEPTPELYTALLAAYCRNSL--IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR-FELIETLYQDMDERSV 246 (502)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~ 246 (502)
+.... +-+..+|+.-..++...|+ +++++.+++++.+.+ +.|-.+|+.-.-++...|. ++++++.++.+++..+
T Consensus 100 ~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 100 CLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred HHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 88765 6688888888877878774 889999999998854 6788888888888888887 5888899998888765
Q ss_pred CCCHHHHHHHHHHHhcc--------------CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010740 247 TPNTVTQNIVLGGYGKA--------------GMFDQMERVLSGMLESATCKPDVWTMNTILSVFA 297 (502)
Q Consensus 247 ~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (502)
. |...|+.....+.+. +.++++++.+...+... +-|...|+-+-..+.
T Consensus 177 ~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 177 S-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLG 238 (331)
T ss_dssp C-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 5 777777666555444 34666777777666542 334555554433333
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=6.1e-07 Score=72.22 Aligned_cols=126 Identities=11% Similarity=-0.020 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
+......+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444455566777777777777766653 4456677777777777777777777777777654 445667777777777
Q ss_pred hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 010740 191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL--IKACVDAMRFELIETLYQDM 241 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~ 241 (502)
..|++++|...|++..+.. +.+...+..+ ...+...|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777766532 3344444332 23355566666666666554
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=1.1e-07 Score=77.89 Aligned_cols=121 Identities=8% Similarity=0.084 Sum_probs=87.0
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh--H
Q 010740 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING-YANAGLF--H 408 (502)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 408 (502)
...|++++|...+....+.... +...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567778888888877776544 67778888888888888888888888877653 2355666777777 6677887 8
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 409 KVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 409 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
+|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888877764 445677777788888888888888888887775
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=8e-08 Score=85.16 Aligned_cols=96 Identities=4% Similarity=-0.101 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740 251 VTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA 330 (502)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 330 (502)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344444555555555555555555554431 1244455555555555555555555555555432 3344455555555
Q ss_pred HHccCcHHHHHHHHHHHHH
Q 010740 331 YGKKRMYDKMSSVMEYMRK 349 (502)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~ 349 (502)
|...|++++|...|....+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=4.2e-07 Score=82.77 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471 (502)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 471 (502)
..|..+..+|...|++++|+..++.+++.. +.+...|..+..+|...|++++|+..|+++.+.... +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 566666667777777777777777766654 445666677777777777777777777777665322 455666667777
Q ss_pred HhcCCcHHH-HHHHHHHHHh
Q 010740 472 AKEGMNDKV-YALEQEKLQM 490 (502)
Q Consensus 472 ~~~g~~~~A-~~~~~~~~~~ 490 (502)
.+.|+.++| ..++++|.+.
T Consensus 275 ~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 777777666 4456666554
No 137
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=2.7e-07 Score=72.28 Aligned_cols=99 Identities=8% Similarity=-0.069 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 473 (502)
+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++....+.. +...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3344444555555555555555555443 334455555555555555555555555555554221 34445555555555
Q ss_pred cCCcHHHHHHHHHHHHhhhhc
Q 010740 474 EGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~ 494 (502)
.|++++|++.|+++++..|.+
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCCCC
Confidence 555555555555555554433
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.1e-07 Score=80.50 Aligned_cols=129 Identities=15% Similarity=0.015 Sum_probs=60.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHc
Q 010740 362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN--VSFYNAVISACIKA 439 (502)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 439 (502)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..++...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 344445555555555555554432 2332233344445555555555555554332211 110 12344455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 440 DDLMEMERVYKRMKEKHCRPD--SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 440 g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
|++++|+..|++.......|. ...+.....++.+.|+.++|...|+++....|.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 555555555555543222132 224444455555555555555555555555443
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=8.2e-07 Score=67.34 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740 145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA 224 (502)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 224 (502)
..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|+.+|+++.+.. +.+..++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 345555555555555555555555555442 2344555555555555555555555555554421 3344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 010740 225 CVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~ 244 (502)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=7.5e-08 Score=85.34 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 45667777788888888888888888877764 4467778888888888888888888888877642 55677777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 010740 223 KACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~ 244 (502)
.++...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888776653
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.70 E-value=5.2e-07 Score=70.02 Aligned_cols=102 Identities=10% Similarity=-0.003 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740 390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE 469 (502)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 469 (502)
+...+..+...+...|++++|...++.+.... +.+...|..+..++...|++++|...+++..+.+.. +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34445555555555555555555555555543 334455555555555555555555555555554321 4455555555
Q ss_pred HHHhcCCcHHHHHHHHHHHHhhhh
Q 010740 470 AYAKEGMNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~ 493 (502)
+|...|++++|++.++++++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555566666666666665555554
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=2.7e-07 Score=77.28 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=40.8
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhCCC
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE----GIE-PTPELYTALLAAYCRNSL 194 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 194 (502)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456666666644444332 1223445566666666666666666666655441 101 112344445555555555
Q ss_pred HHHHHHHHHHh
Q 010740 195 IDEAFVTLNQM 205 (502)
Q Consensus 195 ~~~a~~~~~~~ 205 (502)
+++|.+.+++.
T Consensus 82 ~~~A~~~~~~a 92 (203)
T 3gw4_A 82 WDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=1.4e-06 Score=65.97 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436 (502)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (502)
..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555555666666666666666655442 2244555556666666666666666666655543 34455566666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472 (502)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 472 (502)
...|++++|...|+++.+... .+...+..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 666666666666666665422 13444444444443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=1.8e-06 Score=74.70 Aligned_cols=190 Identities=10% Similarity=-0.001 Sum_probs=127.0
Q ss_pred hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHc------------CCC----
Q 010740 120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKL-------LVLLGKSGQPELARKVFNEMVEE------------GIE---- 176 (502)
Q Consensus 120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~------------~~~---- 176 (502)
..+++..|.+.|..+.+.. +-....|..+ ...+...++..++...+..-... |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999988864 5556688877 46666666666665555554431 110
Q ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 010740 177 ----PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN--T 250 (502)
Q Consensus 177 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~ 250 (502)
--...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 00234455667788888888888888888763 2443355566667888888888888887554431 111 2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740 251 VTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD--VWTMNTILSVFANKGQVDMMERWYEKFRNFG 316 (502)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (502)
..+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 36667777788888888888888887532 22143 3355666777788888888888888887643
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=1.1e-06 Score=67.33 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435 (502)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (502)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4456666667777777777777777776653 2356667777777777788888887777777653 4456677777778
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 010740 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMN 477 (502)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 477 (502)
+...|++++|...|++..+... .+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 8888888888888887777532 2566777777777776664
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.68 E-value=3.6e-07 Score=73.63 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740 355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS 434 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 434 (502)
+...+..+...+...|++++|+..|++..+.. +-+...|..+..+|...|++++|+..++.+.+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566667777777777777777777777653 2255667777777777777777777777777654 445667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 010740 435 ACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~ 455 (502)
+|...|++++|++.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777664
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.8e-07 Score=69.73 Aligned_cols=96 Identities=10% Similarity=-0.081 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 473 (502)
+..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+|..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 4444445555555555555555555442 334455555555555555555555555555554221 34455555555555
Q ss_pred cCCcHHHHHHHHHHHHhh
Q 010740 474 EGMNDKVYALEQEKLQML 491 (502)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~ 491 (502)
.|++++|++.++++++..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 555555555555555554
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=1.7e-07 Score=74.02 Aligned_cols=94 Identities=13% Similarity=-0.024 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC 225 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 225 (502)
.+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|+..|++..... +.+...+..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 34444444444444444444444444432 2344444444444444444444444444444321 23334444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 010740 226 VDAMRFELIETLYQDMD 242 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~ 242 (502)
...|++++|...|+...
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=8.4e-07 Score=67.93 Aligned_cols=86 Identities=10% Similarity=-0.002 Sum_probs=33.8
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++
T Consensus 22 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 98 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVE 98 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHH
Confidence 333444444444444433321 2233334444444444444444444444443332 2223333344444444444444
Q ss_pred HHHHHHHhh
Q 010740 198 AFVTLNQMK 206 (502)
Q Consensus 198 a~~~~~~~~ 206 (502)
|...|++..
T Consensus 99 A~~~~~~~~ 107 (131)
T 2vyi_A 99 AVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=5.9e-07 Score=69.17 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|++.+++..+.. +.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 4455555666666666666666666655542 3345555555566666666666666666555431 334555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 010740 224 ACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~ 244 (502)
++...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 555666666666666555543
No 151
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=7.9e-08 Score=75.85 Aligned_cols=98 Identities=10% Similarity=-0.070 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
...+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHH
Confidence 3456666666666666777766666666654 4456666666666666666666666666666542 444556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 010740 224 ACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~ 244 (502)
+|...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666654
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=2.9e-07 Score=75.26 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=73.9
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCCH-
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA-YCRNSLI- 195 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 195 (502)
+...|++++|+..|+...+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 445667777777776665543 4455666677777777777777777777666553 3455566666666 5566666
Q ss_pred -HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 196 -DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 196 -~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 244 (502)
++|+..|+++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 97 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66777666666532 344556666666666666666666666666654
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=1.5e-06 Score=66.82 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
.+..+..++...|++++|.+.|++..
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333444444444444444333
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=2e-06 Score=78.36 Aligned_cols=146 Identities=8% Similarity=0.031 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 010740 285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364 (502)
Q Consensus 285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (502)
+...+..+...+.+.|++++|+..|++..... |+...+ ..+.+.++ .. .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~----~~----~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA----QA----LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH----HH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH----HH----HHHHHHHHHHH
Confidence 45677788888888888888888888887643 211000 00111100 00 01345666666
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME 444 (502)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (502)
+|.+.|++++|+..|++.++.. +.+...+..+..+|...|++++|...|+.+.+.. +.+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777766653 2355666677777777777777777777776653 4456667777777777777776
Q ss_pred H-HHHHHHHH
Q 010740 445 M-ERVYKRMK 453 (502)
Q Consensus 445 a-~~~~~~~~ 453 (502)
| ..+|+.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 33555554
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=6.7e-07 Score=67.70 Aligned_cols=99 Identities=5% Similarity=-0.119 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 473 (502)
+..+...+...|++++|...++.+.+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445666777788888888887777764 556777777788888888888888888887775432 56677777888888
Q ss_pred cCCcHHHHHHHHHHHHhhhhc
Q 010740 474 EGMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~ 494 (502)
.|++++|++.++++++..|..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 888888888888887776654
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=1.1e-06 Score=65.89 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435 (502)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (502)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555566666666666666666665542 2244555556666666666666666666655543 3345555556666
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 010740 436 CIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~ 455 (502)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=1.5e-07 Score=78.58 Aligned_cols=130 Identities=10% Similarity=-0.028 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD---------------TKTFCCLINGYANAGLFHKVISSVRLASKLQI 422 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (502)
.+..+...+...|++++|...|++..+....-. ...+..+..+|...|++++|+..++.+.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344455555566666666666666554321100 2566777777778888888888887777763
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH-HHHHHHHH
Q 010740 423 AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY-ALEQEKLQ 489 (502)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 489 (502)
+.+...+..+..+|...|++++|++.|++..+... -+...+..+..++...++.+++. ..++.+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777888888888888888887776532 25666777777777776666665 44555444
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=9e-07 Score=67.67 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----hHHHH
Q 010740 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI--AEN----VSFYN 430 (502)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 430 (502)
..+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.++..++... ..+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555666666666666666666665542 22345555566666666666666666665554310 111 12444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 431 AVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555666666666655554
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=2.1e-06 Score=65.48 Aligned_cols=95 Identities=14% Similarity=0.000 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC 225 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 225 (502)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 34444444445555555555555444432 2334444445555555555555555555444421 33344444444455
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 010740 226 VDAMRFELIETLYQDMDE 243 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~ 243 (502)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555544443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=6e-06 Score=61.70 Aligned_cols=86 Identities=16% Similarity=-0.024 Sum_probs=34.1
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
+...|++++|+..|+.+.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 90 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 90 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHH
Confidence 333444444444444433321 2233334444444444444444444444443332 2233333444444444444444
Q ss_pred HHHHHHHhh
Q 010740 198 AFVTLNQMK 206 (502)
Q Consensus 198 a~~~~~~~~ 206 (502)
|.+.+++..
T Consensus 91 A~~~~~~~~ 99 (118)
T 1elw_A 91 AKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=1.5e-06 Score=64.40 Aligned_cols=101 Identities=12% Similarity=0.054 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 010740 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP--DSETFSIMTE 469 (502)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~ 469 (502)
..+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.|++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345556666667777777777777666653 4456667777777777777777777777777652 22 4667777777
Q ss_pred HHHhc-CCcHHHHHHHHHHHHhhhhc
Q 010740 470 AYAKE-GMNDKVYALEQEKLQMLLEA 494 (502)
Q Consensus 470 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 494 (502)
+|.+. |++++|.+.++++....+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777 77888887777777766543
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.2e-05 Score=76.08 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=105.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 010740 257 LGGYGKAGMFDQMERVLSGMLESATCKPD---------------VWTMNTILSVFANKGQVDMMERWYEKFRNFG-IDPE 320 (502)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 320 (502)
...+.+.|++++|++.|..+++...-..+ ...+..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567778888888888888765332221 1235667777777777777777777665421 0111
Q ss_pred H----HHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CC--
Q 010740 321 T----RTFNILIGAYGKKRMYDKMSSVMEYMRKL----QFPW-TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE--GM-- 387 (502)
Q Consensus 321 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~-- 387 (502)
. .+.+.+...+...|+++.+..++...... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12222333334456677777666655432 1111 2345556666666666666666666665432 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 388 KA-DTKTFCCLINGYANAGLFHKVISSVRLASKL--QIAEN----VSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 388 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
++ ...++..++..|...|++++|..+++..... .+..+ ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1234555666666666666666666554432 11111 2334444455555566666666555544
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=3.1e-06 Score=68.04 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
...+..+...+...|++++|...|++.++.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3445555555555555555555555555543 3345555555555555555555555555555432 334445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 010740 224 ACVDAMRFELIETLYQDMDE 243 (502)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~ 243 (502)
++...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=3.6e-06 Score=70.10 Aligned_cols=124 Identities=10% Similarity=-0.005 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK--------------EGTYMKLLVLLGKSGQPELARKVFNEMVEEG 174 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 174 (502)
..+......+...|++++|+..|+.+.+.....++ ...|..+..++...|++++|...+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 33444555677889999999999988775311111 1566666677777777777777777766653
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010740 175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIE 235 (502)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 235 (502)
+.+...+..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777777777777666532 345555666666655555554444
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.7e-06 Score=77.45 Aligned_cols=201 Identities=12% Similarity=0.006 Sum_probs=138.8
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPK---------------EGTYMKLLVLLGKSGQPELARKVFNEMVEEG-IEP 177 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 177 (502)
-.+.+...|++++|++.|..+.+......+ ..++..++..|...|++++|.+.+..+.+.- -.+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345667889999999999998875421211 1247789999999999999999999876531 112
Q ss_pred CH----HHHHHHHHHHHhCCCHHHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 010740 178 TP----ELYTALLAAYCRNSLIDEAFVTLNQMKT----LPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER--SV- 246 (502)
Q Consensus 178 ~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~- 246 (502)
+. .+.+.+...+...|++++|.++++.... .+....-..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 2233344444556889999888877642 1112223567788899999999999999999887642 11
Q ss_pred --CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740 247 --TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA---TCKPD--VWTMNTILSVFANKGQVDMMERWYEKFRN 314 (502)
Q Consensus 247 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 314 (502)
.....++..++..|...|++++|...+++..... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1124578888899999999999999998875431 11111 24456667777888999999888877654
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=3.2e-06 Score=65.93 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------Ch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAE------NV-----SFYNAVISACIKADDLMEMERVYKRMKEK-----HC 457 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~ 457 (502)
+......+...|++++|+..|+..++..... +. ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3445555666666666666666666542110 22 27888888888899999999888888874 11
Q ss_pred CCC-HHHH----HHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccccc
Q 010740 458 RPD-SETF----SIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQ 500 (502)
Q Consensus 458 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (502)
.|+ ...| .....++...|++++|++.|+++++..|++.+-..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 454 5578 899999999999999999999999999998876543
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=1.2e-06 Score=68.49 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC 225 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 225 (502)
.+..+...+...|++++|...|++..... +.+...|..+..++...|++++|+..|++..... +.+...+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 44455555566666666666666655543 3455555556666666666666666666655532 34445555555566
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 010740 226 VDAMRFELIETLYQDMDE 243 (502)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~ 243 (502)
...|++++|.+.|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666655544
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=2.9e-06 Score=62.79 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCC--CHHHHHHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP--DVYTYSTL 221 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 221 (502)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.|++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHH
Confidence 3455556666666666666666666665543 3345555666666666666666666666655532 23 45555555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 010740 222 IKACVDA-MRFELIETLYQDMDER 244 (502)
Q Consensus 222 l~~~~~~-~~~~~a~~~~~~~~~~ 244 (502)
..++... |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5666666 6666666666655544
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=4.2e-06 Score=65.66 Aligned_cols=98 Identities=11% Similarity=-0.057 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHH
Q 010740 355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD----TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYN 430 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 430 (502)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...++...+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666666677777777777777776654 344 4556666666667777777777776666543 33455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 431 AVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666677777777777666654
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.44 E-value=5.4e-06 Score=63.26 Aligned_cols=60 Identities=8% Similarity=0.098 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740 289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK 349 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 349 (502)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.++...+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444445555555555555444432 33344444444445555555555544444433
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=5.1e-06 Score=63.48 Aligned_cols=112 Identities=9% Similarity=0.077 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----hHHHH
Q 010740 357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI--AEN----VSFYN 430 (502)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 430 (502)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666665543 23455566666666666666666666666655421 111 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740 431 AVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471 (502)
Q Consensus 431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 471 (502)
.+..++...|++++|.+.|+++.+. .|+...+..+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 6677777777777777777777664 34555555444443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.5e-05 Score=62.39 Aligned_cols=98 Identities=15% Similarity=-0.068 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT----PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTY 218 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (502)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+..+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence 3445555555555555555555555555543 233 3445555555555555555555555554421 3344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 219 STLIKACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 219 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 244 (502)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555555543
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=8.2e-06 Score=63.07 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL 221 (502)
Q Consensus 142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 221 (502)
.+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 345566666666666666666666666666553 3445666666666666666666666666665532 3455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 010740 222 IKACVDAMRFELIETLYQDMDE 243 (502)
Q Consensus 222 l~~~~~~~~~~~a~~~~~~~~~ 243 (502)
..++...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=2.2e-06 Score=68.39 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CC-CChH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD----TKTFCCLINGYANAGLFHKVISSVRLASKLQ----IA-ENVS 427 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~ 427 (502)
++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.++...+.. .+ ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555555666666666666655543210 011 1356666677777777777777777655431 00 1144
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKEK----HCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
++..+...+...|++++|.+.+++..+. +..+ ....+..+...|...|++++|.+.++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888877643 1111 134677788888899999999999999887643
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=9.6e-06 Score=61.92 Aligned_cols=93 Identities=10% Similarity=-0.024 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---hHHHHHHHH
Q 010740 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADT---KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN---VSFYNAVIS 434 (502)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 434 (502)
.+...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...++.+.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 4455566667777777777776654211 12 355566666667777777777776666643 223 445566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 010740 435 ACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~ 455 (502)
++...|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666677777777777666654
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=5.3e-06 Score=66.47 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAE-------GM----------KADTKTFCCLINGYANAGLFHKVISSVRLAS 418 (502)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (502)
...+......+.+.|++++|+..|.+.+.. +- +.+...|..+..+|...|++++|+..++.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666677777777777777777776653 00 0112345555556666666666666666665
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 543 444555566666666666666666666665553
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=5.1e-06 Score=62.77 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=69.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
...+.+.|++++|+..|+.+.+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 345566788888888888877753 5567788888888888888888888888887764 4467777788888888888
Q ss_pred HHHHHHHHHHhhcC
Q 010740 195 IDEAFVTLNQMKTL 208 (502)
Q Consensus 195 ~~~a~~~~~~~~~~ 208 (502)
+++|+..|++..+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 101 ANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887754
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=9.8e-07 Score=66.36 Aligned_cols=87 Identities=10% Similarity=0.068 Sum_probs=59.4
Q ss_pred hcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 010740 368 DMGDAKHMEYTFEQMHAEGM--KADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM 445 (502)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 445 (502)
..|++++|+..|++..+.+. +-+...+..+..+|...|++++|+..++.+.+.. +.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35777888888888776531 1233566777777788888888888888777764 45567777777788888888888
Q ss_pred HHHHHHHHHC
Q 010740 446 ERVYKRMKEK 455 (502)
Q Consensus 446 ~~~~~~~~~~ 455 (502)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777765
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=8.9e-06 Score=77.76 Aligned_cols=116 Identities=10% Similarity=-0.017 Sum_probs=51.7
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010740 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI 411 (502)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 411 (502)
.+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3344455555555544444322 34445555555555555555555555554432 123344455555555555555555
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHH--HHHcCCHHHHHHHHH
Q 010740 412 SSVRLASKLQIAENVSFYNAVISA--CIKADDLMEMERVYK 450 (502)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 450 (502)
+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554432 2223333333333 444555555555554
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=8.8e-06 Score=62.11 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHA 384 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 384 (502)
.+..+..++...|++++|.+.|++..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=1.1e-05 Score=76.73 Aligned_cols=124 Identities=9% Similarity=-0.046 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC--------------hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT--------------SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386 (502)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 386 (502)
...+..+...|.+.|++++|...|.+..+...... ...|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45666777777778888888888877776543311 4566666666666666666666666666543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 010740 387 MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME 446 (502)
Q Consensus 387 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 446 (502)
+.+...|..+..+|...|++++|...|+.+.+.. +.+...+..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2245566666666666666666666666666543 334455566666666666655554
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=1.5e-06 Score=83.11 Aligned_cols=121 Identities=10% Similarity=0.078 Sum_probs=97.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740 362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441 (502)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 441 (502)
+...+.+.|++++|.+.|++..+.. +-+...+..+..+|...|++++|++.++++.+.. +.+...|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445668899999999999999863 3357899999999999999999999999999874 5678889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCcHHHHHHHH
Q 010740 442 LMEMERVYKRMKEKHCRPDSETFSIMTEA--YAKEGMNDKVYALEQ 485 (502)
Q Consensus 442 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 485 (502)
+++|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999986432 34456556555 888999999999998
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=5.2e-05 Score=73.87 Aligned_cols=160 Identities=8% Similarity=-0.026 Sum_probs=124.5
Q ss_pred cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010740 336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD----------AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG 405 (502)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 405 (502)
..++|++.++.+...+.. +...|+.-..++...|+ ++++++.++.+.+.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 346677888888777665 66777777666666666 788888888888764 336677888777888888
Q ss_pred --ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 010740 406 --LFHKVISSVRLASKLQIAENVSFYNAVISACIKAD-DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE-------- 474 (502)
Q Consensus 406 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-------- 474 (502)
+++++++.++.+.+.. +-|..+|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6689999998888875 567888888888888888 888999999998887654 788888877777663
Q ss_pred ------CCcHHHHHHHHHHHHhhhhcccccc
Q 010740 475 ------GMNDKVYALEQEKLQMLLEASGHWQ 499 (502)
Q Consensus 475 ------g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (502)
+.++++++++++++...|.+...|.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 5578999999999999888877663
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=9.8e-06 Score=64.52 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCChH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD----TKTFCCLINGYANAGLFHKVISSVRLASKL----QI-AENVS 427 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 427 (502)
.+..+...+...|++++|.+.+++..+... ..+ ...+..+...+...|++++|.+.++...+. +. .....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344445555555555555555555433210 011 234555666667777777777776665543 11 11134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 428 FYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777778888888888888877664
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=4.1e-05 Score=58.30 Aligned_cols=92 Identities=18% Similarity=0.028 Sum_probs=63.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 010740 114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKE---GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT---PELYTALLA 187 (502)
Q Consensus 114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 187 (502)
....+...|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|...|+++.+.. +.+ ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3445566778888888887776642 2233 466677777777888888888887777653 223 566777777
Q ss_pred HHHhCCCHHHHHHHHHHhhcC
Q 010740 188 AYCRNSLIDEAFVTLNQMKTL 208 (502)
Q Consensus 188 ~~~~~g~~~~a~~~~~~~~~~ 208 (502)
++...|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777778888887777777663
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=4.1e-06 Score=76.23 Aligned_cols=154 Identities=8% Similarity=0.012 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING 400 (502)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 400 (502)
...+..+...+.+.|++++|...|........ +.. .+...++..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 56677888888899999999999998877532 221 1223333444333221 1367888899
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCCcH
Q 010740 401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEA-YAKEGMND 478 (502)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~~ 478 (502)
|.+.|++++|+..++.+++.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 567888999999999999999999999998875 34 44455555555 34567788
Q ss_pred HHHHHHHHHHHhhhhccc
Q 010740 479 KVYALEQEKLQMLLEASG 496 (502)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~ 496 (502)
++.++|++|++..+.+..
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 899999999988776554
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=2.4e-05 Score=74.49 Aligned_cols=122 Identities=8% Similarity=-0.043 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK---------------EGTYMKLLVLLGKSGQPELARKVFNEMVEE 173 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 173 (502)
..+......+...|++++|+..|+.+.+.. +.+ ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344445566677888888888888777642 222 456667777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010740 174 GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIE 235 (502)
Q Consensus 174 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 235 (502)
. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++++++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4456667777777777777777777777776642 344455666666666666665554
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.21 E-value=1.1e-05 Score=76.67 Aligned_cols=126 Identities=10% Similarity=-0.037 Sum_probs=62.4
Q ss_pred HHHhhhcHHHHHHHHHHHHhC-----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHHHHH
Q 010740 117 DHVLKKQWFQALQVFEMLKEQ-----PFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEE-----G--IEPTPELYT 183 (502)
Q Consensus 117 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 183 (502)
.+...|++++|+.+++...+. |...|+ ..+++.|..+|...|++++|..++++.++. | .+-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344566777777666654321 111222 235666666666666666666666655432 1 111234455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhcC-----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740 184 ALLAAYCRNSLIDEAFVTLNQMKTL-----PNCQPD-VYTYSTLIKACVDAMRFELIETLYQDMD 242 (502)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 242 (502)
.|...|...|++++|+.++++..+. +.-.|+ ..+.+.+..++...+.+++|+.+|..+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555554321 100111 2223344444444555555555555544
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=2e-06 Score=64.65 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=57.5
Q ss_pred hhcHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFY-QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 199 (502)
.|++++|+..|+.+.+.+.- +.+...+..+..++...|++++|...|++..+.. +-+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777777777777764200 2234467777777777777877877777777664 445677777777777777777777
Q ss_pred HHHHHhhcC
Q 010740 200 VTLNQMKTL 208 (502)
Q Consensus 200 ~~~~~~~~~ 208 (502)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776653
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.17 E-value=0.00015 Score=70.72 Aligned_cols=173 Identities=6% Similarity=-0.093 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-
Q 010740 302 VDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM----------YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG- 370 (502)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 370 (502)
.++|++.++++...+ +-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356667776666644 4445555555555555555 67777777777777665 7777777777777777
Q ss_pred -CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc---------
Q 010740 371 -DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG-LFHKVISSVRLASKLQIAENVSFYNAVISACIKA--------- 439 (502)
Q Consensus 371 -~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 439 (502)
+++++++.++++.+.+. -+...|+.-..++...| .++++++.++.+.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 56777788877777642 35667777666677777 7777777777777654 55677777666666552
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 010740 440 -----DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479 (502)
Q Consensus 440 -----g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 479 (502)
+.++++++.++++...... |...|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578899999988876433 77788888888877777544
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=2.6e-05 Score=71.76 Aligned_cols=123 Identities=10% Similarity=0.011 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCC--------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQP--------------FYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEG 174 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 174 (502)
..+......+.+.|++++|++.|+.+.+.- ..+.+..+|..+..+|.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 344455566778899999999998776510 001123345555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740 175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELI 234 (502)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 234 (502)
+.+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555555555555555555555554431 23444444444444444444433
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=2.9e-05 Score=71.46 Aligned_cols=120 Identities=10% Similarity=-0.057 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCC
Q 010740 145 GTYMKLLVLLGKSGQPELARKVFNEMVEEG---------------IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP 209 (502)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 209 (502)
..+..+...+.+.|++++|...|++.++.- -+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 356677788888889999988888877520 01123444555555555555555555555555431
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740 210 NCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD 267 (502)
Q Consensus 210 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 267 (502)
+.+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+
T Consensus 304 --p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 304 --PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555554443211 3334444444444333333
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.11 E-value=1.2e-05 Score=76.38 Aligned_cols=127 Identities=6% Similarity=-0.136 Sum_probs=73.2
Q ss_pred HHhcCCHhHHHHHHHHHHHcC---CC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C--CCCChHHHHH
Q 010740 366 FSDMGDAKHMEYTFEQMHAEG---MK---AD-TKTFCCLINGYANAGLFHKVISSVRLASKL-----Q--IAENVSFYNA 431 (502)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~---~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 431 (502)
+...|++++|+.++++..+.. +. |+ ..+++.|..+|...|++++|..+++++++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445666666666666654321 11 11 235666667777777777777666655432 1 1122445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 432 VISACIKADDLMEMERVYKRMKEK-----HCR-PD-SETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 432 l~~~~~~~g~~~~a~~~~~~~~~~-----g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
|...|...|++++|+.++++..+. |.. |+ ..+.+.+..++...|.+++|..+++++.+...
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777665532 221 21 22444555666677777777777777766543
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=3.7e-05 Score=61.46 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhC--------CC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQ--------PF--------YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVE 172 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 172 (502)
..+......+...|++++|+..|+..... .. .+.+...|..+..+|.+.|++++|...+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44555666777899999999999887653 00 011234666777777777777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcC
Q 010740 173 EGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL 208 (502)
Q Consensus 173 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 208 (502)
.. +.+...|..+..+|...|++++|+..|++..+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 64 455667777777777777777777777776654
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.07 E-value=0.00014 Score=56.14 Aligned_cols=111 Identities=10% Similarity=-0.061 Sum_probs=65.3
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHH
Q 010740 371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEME 446 (502)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 446 (502)
++++|.+.|++..+.| .++.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666665554 22222 4445555555666666666665543 34555556666655 56666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHhhh
Q 010740 447 RVYKRMKEKHCRPDSETFSIMTEAYAK----EGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 447 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 492 (502)
++|++..+.| +...+..|...|.. .++.++|+++++++.+.+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 6666666654 45566666666666 6666677777766666543
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=2.7e-05 Score=70.85 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
..+......+...|++++|+..|+.+... .|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 33445556677889999999999987764 333321 111222222221110 1244555555
Q ss_pred HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCChH
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG-YGKAGMFD 267 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~g~~~ 267 (502)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555431 334555555555555555555555555555443211 23333333333 22234445
Q ss_pred HHHHHHHHHHH
Q 010740 268 QMERVLSGMLE 278 (502)
Q Consensus 268 ~a~~~~~~~~~ 278 (502)
.+...|..+..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 55555555543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.01 E-value=4.6e-05 Score=56.76 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
.|+..|++..+.. +.+...+..+...|...|++++|...++.+.+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666677666543 2355667777777777777777777777777654 4456667777777777777777777777766
Q ss_pred HC
Q 010740 454 EK 455 (502)
Q Consensus 454 ~~ 455 (502)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=0.00015 Score=56.53 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Q 010740 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA------D-----TKTFCCLINGYANAGLFHKVISSVRLASKL------- 420 (502)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 420 (502)
+......+.+.|++++|+..|++.++..... + ...|..+..++...|++++|+..++..++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444455556666666666666665532110 1 227777777888888888888888777775
Q ss_pred CCCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 421 QIAENVSFY----NAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 421 ~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
. +.+...| .....++...|++++|+..|++..+.
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 3345667 77888888888888888888888753
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.98 E-value=0.00041 Score=53.49 Aligned_cols=113 Identities=12% Similarity=-0.057 Sum_probs=85.5
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR----NSLID 196 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 196 (502)
.+++++|++.|+...+.+ .++. . |...|...+.+++|.+.|++..+.| +...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 467888888888888876 3333 3 7777777778888888888888764 56777778888877 77888
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 010740 197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSV 246 (502)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~ 246 (502)
+|+++|++..+. -+...+..|...|.. .+++++|.+.|++..+.|.
T Consensus 79 ~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888888888764 456677777777777 7788888888888777653
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.9e-05 Score=58.34 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 010740 390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-------SE 462 (502)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-------~~ 462 (502)
+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|++.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34556667777777888888888887777764 4566777778888888888888888888887653 33 45
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHH
Q 010740 463 TFSIMTEAYAKEGMNDKVYALEQE 486 (502)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~ 486 (502)
.+..+..++...|+.+.|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 566666666666666666554443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.85 E-value=0.00011 Score=54.70 Aligned_cols=79 Identities=9% Similarity=-0.110 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 205 (502)
+|+..|+.+.+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677766653 5567778888888888888888888888887764 455677778888888888888888888777
Q ss_pred hc
Q 010740 206 KT 207 (502)
Q Consensus 206 ~~ 207 (502)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.84 E-value=9.3e-05 Score=53.45 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
+...+..+..+|...|++++|+..++.+.+.. +.+...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666666666666666666666666653 33455566666666666666666666666554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.83 E-value=2.3e-05 Score=57.87 Aligned_cols=63 Identities=14% Similarity=0.017 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445555555556666666666666555543 33455555555666666666666666665554
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.80 E-value=3.6e-05 Score=59.90 Aligned_cols=110 Identities=10% Similarity=0.073 Sum_probs=76.0
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740 366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF----------HKVISSVRLASKLQIAENVSFYNAVISA 435 (502)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (502)
..+.+.+++|.+.++...+.. +-+...|..+..++...+++ ++|+..|+++++.. +.+...|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 345567788888888888764 33667777788888777664 48888888877764 4466777788888
Q ss_pred HHHcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 436 CIKAD-----------DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 436 ~~~~g-----------~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
|...| ++++|++.|++..+. .|+.. .+.+++++.+++.+..+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~-------------~y~~al~~~~ka~el~~ 142 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT-------------HYLKSLEMTAKAPQLHA 142 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH-------------HHHHHHHHHHTHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCH-------------HHHHHHHHHHhCHhccC
Confidence 87664 788888888887774 45432 33566666666666544
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.78 E-value=8.6e-05 Score=57.76 Aligned_cols=99 Identities=18% Similarity=-0.003 Sum_probs=74.9
Q ss_pred HhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 119 VLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP----------ELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 119 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
.+.+++++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 35678999999999888874 66888999888888888765 58888888888875 4567788888888
Q ss_pred HHhCC-----------CHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 189 YCRNS-----------LIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 189 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
|...| ++++|++.|++..+. .|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 88764 788888888887764 455555444433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=0.00045 Score=48.45 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471 (502)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 471 (502)
..+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+... -+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345555666666666666666666666543 34455666666666667777777777766665432 2455555555555
Q ss_pred Hhc
Q 010740 472 AKE 474 (502)
Q Consensus 472 ~~~ 474 (502)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=0.00046 Score=48.40 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740 145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA 224 (502)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 224 (502)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 345555555555566666666665555543 3345555555555555666666666655555431 3344444444444
Q ss_pred HH
Q 010740 225 CV 226 (502)
Q Consensus 225 ~~ 226 (502)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.63 E-value=0.00017 Score=51.98 Aligned_cols=65 Identities=25% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
-+...+..+..++...|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355667777777777777777777777777664 34556677777777777777777777776654
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.42 E-value=0.00049 Score=64.23 Aligned_cols=88 Identities=5% Similarity=0.066 Sum_probs=54.6
Q ss_pred cCChHHHHHHHHHHHhc---CCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHH
Q 010740 404 AGLFHKVISSVRLASKL---QIAE----NVSFYNAVISACIKADDLMEMERVYKRMKEK-----HC-RPD-SETFSIMTE 469 (502)
Q Consensus 404 ~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~-~p~-~~~~~~l~~ 469 (502)
.|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|+.++++..+. |. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666655442 1111 2455667777777777777777777766532 21 222 335677777
Q ss_pred HHHhcCCcHHHHHHHHHHHHhh
Q 010740 470 AYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
.|...|++++|..+++++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHH
Confidence 7777777777777777777764
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.0014 Score=61.23 Aligned_cols=26 Identities=8% Similarity=-0.102 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740 217 TYSTLIKACVDAMRFELIETLYQDMD 242 (502)
Q Consensus 217 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 242 (502)
+++.|...|...|++++|+.++++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35555555555555555555555543
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.33 E-value=0.0014 Score=61.19 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=50.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcC---CCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 010740 400 GYANAGLFHKVISSVRLASKLQ---IAE----NVSFYNAVISACIKADDLMEMERVYKRMKEK-----HC-RPD-SETFS 465 (502)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~-~p~-~~~~~ 465 (502)
.+...|++++|+.++++.++.. +.+ ...+++.|..+|...|++++|+.+++++.+. |. .|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666555431 111 2345566666666666666666666655432 11 122 23556
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 466 IMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.|...|...|++++|..+++++++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666665
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.00093 Score=47.77 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=52.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010740 397 LINGYANAGLFHKVISSVRLASKLQIAENVS-FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475 (502)
Q Consensus 397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 475 (502)
....+...|++++|...++.+.+.. +.+.. .+..+..+|...|++++|++.|++..+.... +...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------H
Confidence 3445666777777777777776653 34455 6777777777777777777777777765322 2222211 4
Q ss_pred CcHHHHHHHHHHHHhhhh
Q 010740 476 MNDKVYALEQEKLQMLLE 493 (502)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~ 493 (502)
.+.++...+++.....|.
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 555566666655554443
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.0087 Score=61.53 Aligned_cols=153 Identities=10% Similarity=-0.006 Sum_probs=89.0
Q ss_pred hccCChHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHH
Q 010740 261 GKAGMFDQMER-VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDK 339 (502)
Q Consensus 261 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 339 (502)
...+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.-. .-.......|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 34666777665 44211 112223556666677777777776552111 11223445678888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740 340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK 419 (502)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (502)
|.++.+.+ .+...|..+...+.+.++++.|.++|.++.. |..+...+...|+.+...++.+.+..
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 77775432 2667888888888888888888888887653 33445555556666666555555554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 420 LQIAENVSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 420 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
.| -++....+|.+.|++++|++++.++.
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 43 13334445556666666666665543
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.25 E-value=0.0011 Score=46.81 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 389 ADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 389 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.+...+..+..++...++ .++|..++++.++.. +.+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455566666666654443 567777777776654 555666666667777777777777777777665
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.25 E-value=0.0015 Score=61.01 Aligned_cols=90 Identities=10% Similarity=-0.067 Sum_probs=39.4
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHHH
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQP--FYQPK----EGTYMKLLVLLGKSGQPELARKVFNEMVEE-----G--IEPTPEL 181 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~ 181 (502)
+..+...|++++|+.+++...+.. .+.|+ ..+++.|..+|...|++++|..++++.++. | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334444555555555555544321 01111 224455555555555555555555544321 1 0011233
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Q 010740 182 YTALLAAYCRNSLIDEAFVTLNQ 204 (502)
Q Consensus 182 ~~~l~~~~~~~g~~~~a~~~~~~ 204 (502)
++.|...|...|++++|+.++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 44444444455554444444444
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.011 Score=53.06 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740 141 QPKEGTYMKLLVLLG--KSG---QPELARKVFNEMVEEGIEPTPELYTALLAAYC 190 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (502)
+.+..+|...+++.. ..+ +..+|..+|++.++.. +-....|..+..+|.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDI 244 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 556667777765543 333 3578999999999874 333556665555554
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.17 E-value=0.014 Score=52.40 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010740 388 KADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF 464 (502)
Q Consensus 388 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 464 (502)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 3455555555555555566666666666666654 45555555566666666666666666666653 3444444
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.0014 Score=46.79 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=56.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740 432 VISACIKADDLMEMERVYKRMKEKHCRPDSE-TFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW 498 (502)
Q Consensus 432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 498 (502)
....+...|++++|++.|+++.+... .+.. .|..+..+|...|++++|++.|+++++..|.....|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 45678889999999999999998643 2667 899999999999999999999999999988776544
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.98 E-value=0.11 Score=53.15 Aligned_cols=28 Identities=4% Similarity=-0.122 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 249 NTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
+...|..+...+.+.|+++.|++.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3344555555555555555555554444
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.98 E-value=0.0035 Score=48.15 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHH
Q 010740 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG---LFHKVISSVRLASKLQIAE--NVSFYNAVISACIKADDLMEME 446 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 446 (502)
...+.+-|.+..+.|. ++..+...+..++++.+ ++++++.+++...+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555554443 45555555566666655 4446666666655543 22 2344444555566666666666
Q ss_pred HHHHHHHH
Q 010740 447 RVYKRMKE 454 (502)
Q Consensus 447 ~~~~~~~~ 454 (502)
++++.+.+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666665
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.85 E-value=0.0079 Score=43.41 Aligned_cols=67 Identities=13% Similarity=-0.000 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQ------IAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 389 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.+..-+..+...+...|+++.|..+++.+.+.. -.....++..|..++.+.|++++|..+++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556678888888888888888888776641 1235667788888888888888888888888774
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.85 E-value=0.076 Score=39.24 Aligned_cols=60 Identities=15% Similarity=-0.010 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740 396 CLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456 (502)
Q Consensus 396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 456 (502)
..+..+...|.-++-.+++..+... .+|++...-.+..+|.+-|+..+|.+++.++-+.|
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333444444444444444443221 23344444444444444444444444444444444
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.78 E-value=0.037 Score=38.75 Aligned_cols=67 Identities=6% Similarity=-0.096 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcC
Q 010740 141 QPKEGTYMKLLVLLGKSGQ---PELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL 208 (502)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 208 (502)
+.+...+..+..++...++ .++|..+|++.++.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777754444 678888888888775 556777777778888888888888888888765
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.13 Score=40.58 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=83.5
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010740 330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK 409 (502)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 409 (502)
.....|+++.|.++.+.+ -+...|..|.......|+++-|.++|.+... |..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345668888888887665 2677888888888888888888888887653 4455556666787777
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 410 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
-.++-+.....| -++.-...+.-.|+++++.++|.+.-. .|-.. ......|-.+.|.++.+++
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 776666655544 145555666678888888888755432 11111 1122356666677776654
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.3 Score=38.53 Aligned_cols=103 Identities=8% Similarity=-0.036 Sum_probs=59.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 010740 152 VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF 231 (502)
Q Consensus 152 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 231 (502)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 3445566677666666554 3466677777777777777777777766543 44455555556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 232 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
+...++-+.....|- ++.....+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 665555444444431 233344455566666666666543
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.20 E-value=0.064 Score=38.48 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 288 TMNTILSVFANKGQVDMMERWYEKFRNFG------IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
.+..+...+.+.|+++.|..+|++..+.- -......+..|..+|.+.|+++.|..+++++.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444444445555555555554443310 0122334444555555555555555555554443
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.07 E-value=2e-05 Score=71.95 Aligned_cols=174 Identities=13% Similarity=0.203 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (502)
..+..++....+.|.+++-+..+...++.. -+...=+.|+-+|++.+++.+..+.+. .||..-...+.+-
T Consensus 84 s~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDr 153 (624)
T 3lvg_A 84 SSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 153 (624)
T ss_dssp CSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHH
Confidence 344456666667777877777777766542 233445677777888777655333321 3555555666777
Q ss_pred HHhCCCHHHHHHHHHHhhcCCC-------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010740 189 YCRNSLIDEAFVTLNQMKTLPN-------------------CQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN 249 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 249 (502)
|...|.++.|.-+|..+..... -.-++.||..+-.+|...+.+..|.-.--.++-..
T Consensus 154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---- 229 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---- 229 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----
T ss_pred HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH----
Confidence 7777777777766665533210 01234456666666666666555544333322110
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740 250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK 299 (502)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (502)
.-...++..|-..|.+++-+.+++.-+.- -......|+-|.-.|++-
T Consensus 230 -deL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 230 -DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp -SCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc
Confidence 11223445566666666666666655421 134555566655555544
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.04 E-value=0.024 Score=42.92 Aligned_cols=102 Identities=5% Similarity=0.019 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHhcCCH------hHHHHHHHHHHHcCCCCCHH----HHHHHHHHH---HhcCChHHHHHHHHHHHhcC
Q 010740 355 TSSTYNNVIEAFSDMGDA------KHMEYTFEQMHAEGMKADTK----TFCCLINGY---ANAGLFHKVISSVRLASKLQ 421 (502)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~ 421 (502)
|..+|-..+....+.|+. ++..++|++.... ++|+.. .|..+---| ...+++++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 556666666666666666 6666666666553 334321 122121111 13355566666666554442
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010740 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR 458 (502)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 458 (502)
-.- ..+|-.....-.++|+++.|.+++.+....+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 122 455555555555566666666666666655544
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.99 E-value=0.11 Score=39.91 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHH
Q 010740 336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG---DAKHMEYTFEQMHAEGMKA--DTKTFCCLINGYANAGLFHKV 410 (502)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a 410 (502)
....+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+|++..+.+ .| ....+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34555666666555544 36666666777777766 5557777777776653 23 244556666677777777777
Q ss_pred HHHHHHHHhc
Q 010740 411 ISSVRLASKL 420 (502)
Q Consensus 411 ~~~~~~~~~~ 420 (502)
.++++.+++.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777764
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.86 E-value=0.063 Score=46.13 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=72.9
Q ss_pred HhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCH
Q 010740 372 AKHMEYTFEQMHAEGMKAD---TKTFCCLINGYANA-----GLFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDL 442 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 442 (502)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++.++.+-.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777774 555 45777788888774 88888888888888864222467777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740 443 MEMERVYKRMKEKHCR--PDSETFSIMTEAYAKEGMNDKVYALEQEKLQ 489 (502)
Q Consensus 443 ~~a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (502)
+++.+.+++....... |+....+.+ .-.+|..+++++-.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~d 297 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhHH
Confidence 8888888888887655 554444333 22355566655443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.84 E-value=0.052 Score=40.02 Aligned_cols=82 Identities=9% Similarity=-0.013 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhcCCC-CChHHHHHHHHHHHHcCCHHHHHH
Q 010740 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK---VISSVRLASKLQIA-ENVSFYNAVISACIKADDLMEMER 447 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 447 (502)
...+.+-|......|. ++..+-..+..++.+..+... ++.+++...+.+.+ -.....-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3334444444433332 344444444444444443333 44444444433201 122223334444444555555555
Q ss_pred HHHHHHH
Q 010740 448 VYKRMKE 454 (502)
Q Consensus 448 ~~~~~~~ 454 (502)
.++.+.+
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.65 E-value=0.15 Score=43.88 Aligned_cols=110 Identities=7% Similarity=0.056 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChH
Q 010740 336 MYDKMSSVMEYMRKLQFPW-TSSTYNNVIEAFSDM-----GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA-GLFH 408 (502)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~ 408 (502)
....|...+++..+....- +-..|..+...|.+. |+.++|.+.|++.++....-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4567778888888764331 255888888888884 99999999999999864322367777788888874 9999
Q ss_pred HHHHHHHHHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740 409 KVISSVRLASKLQIA--ENVSFYNAVISACIKADDLMEMERVYKRMK 453 (502)
Q Consensus 409 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 453 (502)
++.+.+++.+..... |+....+.+ .-++|..+++++.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 999999999987655 555544433 3355666665544
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.51 E-value=1.6 Score=44.50 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhH
Q 010740 297 ANKGQVDMMERWYEKFRNFGIDPETRTFN--ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH 374 (502)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 374 (502)
...|+.+.+..+.+.+.... .|....-. .+.-+|+..|+.....+++..+...... ++.-...+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d-~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSND-DVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcH-HHHHHHHHHHHhhccCCHHH
Confidence 34555555555555554421 12221111 2223444555555555555555543211 22222223333334455455
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 010740 375 MEYTFEQMHAEGMKADTKTFCCLINGYANAGLF-HKVISSVRLAS 418 (502)
Q Consensus 375 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 418 (502)
+.++++.+.+.+ .|....-..+..+....|+. .++.+.+..+.
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 555555444432 23322222223333333332 34555555544
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.92 E-value=0.34 Score=36.73 Aligned_cols=52 Identities=12% Similarity=-0.008 Sum_probs=34.9
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 010740 370 GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI 422 (502)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 422 (502)
++.++|.++|+.++..+-+. ...|.....--.++|+++.|.+++......+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 67777777777776543333 55565556666677888888888877777653
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.61 E-value=0.98 Score=33.53 Aligned_cols=138 Identities=7% Similarity=-0.029 Sum_probs=88.9
Q ss_pred HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740 118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 197 (502)
+...|..++..++........ +..-||.+|--....-+-+...++++..-+. -| ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHH
Confidence 455788999999998877643 5667888777777777766666666665432 11 123455555
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740 198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (502)
.+..+-.+- .+...+...++.+...|+-++-.+++..+... .+|+......+..+|.+.|+..+|.+++.+..
T Consensus 80 Vi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 80 VVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 555554442 23344556666777777777777777775432 35567777777777777777777777777775
Q ss_pred Hc
Q 010740 278 ES 279 (502)
Q Consensus 278 ~~ 279 (502)
++
T Consensus 153 ~k 154 (172)
T 1wy6_A 153 KK 154 (172)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.56 E-value=0.53 Score=36.45 Aligned_cols=63 Identities=10% Similarity=-0.040 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010740 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK-------EGTYMKLLVLLGKSGQPELARKVFNEMVE 172 (502)
Q Consensus 110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 172 (502)
.+..-++.+...|.|+.|+-+.+.+.......|+ ..++..+.+++...|++..|...|++.++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555667777889999999888875433212333 13667788999999999999999999754
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.26 E-value=2.9 Score=44.51 Aligned_cols=147 Identities=5% Similarity=-0.061 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------------
Q 010740 184 ALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV----------------- 246 (502)
Q Consensus 184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----------------- 246 (502)
.++..+...+.++-+.++...+. .+....-.+..++...|++++|.+.|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 45555666666666666554432 2333334455666777777777777765421 11
Q ss_pred ------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010740 247 ------TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD---VWTMNTILSVFANKGQVDMMERWYEKFRNFGI 317 (502)
Q Consensus 247 ------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 317 (502)
..-..-|..++..+-+.+.++.+.++-...++..+...+ ...|..+.+.+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 111234677888888888888888888877765432221 12577888888899999998888877765433
Q ss_pred CCCHHHHHHHHHHHHccCcHHH
Q 010740 318 DPETRTFNILIGAYGKKRMYDK 339 (502)
Q Consensus 318 ~~~~~~~~~l~~~~~~~g~~~~ 339 (502)
-...+..|+..++..|..+.
T Consensus 970 --r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHH
T ss_pred --HHHHHHHHHHHHHhCCChhh
Confidence 24456666666666554433
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.24 E-value=0.52 Score=34.72 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHH
Q 010740 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPEL---ARKVFNEMVEEGIEP--TPELYTALLAAYCRNSLIDE 197 (502)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 197 (502)
....+.+-|......+ .++..+-..+..++.+..+... +..+++.+.+.+ .| .....-.|.-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344444454444444 3666666677777777666554 667777766553 12 22333445566777777777
Q ss_pred HHHHHHHhhcC
Q 010740 198 AFVTLNQMKTL 208 (502)
Q Consensus 198 a~~~~~~~~~~ 208 (502)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.07 E-value=0.67 Score=42.52 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 205 (502)
...++..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555554442 345555555555555555555555555543
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.07 E-value=3.8 Score=38.23 Aligned_cols=192 Identities=6% Similarity=0.030 Sum_probs=99.6
Q ss_pred hhcHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hC
Q 010740 121 KKQWFQALQVFEMLKE----QPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC----RN 192 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 192 (502)
.|++++|++.+-.+.+ .++...+......++..|...|+++...+.+..+.+.. .-.......++..+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcC
Confidence 5889999988766543 22234456678889999999999998888777665432 112233333443332 12
Q ss_pred CC--HHHHHHHHHHhhcC--CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 010740 193 SL--IDEAFVTLNQMKTL--PNCQP---DVYTYSTLIKACVDAMRFELIETLYQDMDER--SVTPN---TVTQNIVLGGY 260 (502)
Q Consensus 193 g~--~~~a~~~~~~~~~~--~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~l~~~~ 260 (502)
.. .+.-..+.+.+... +.+-. .......|...+...|++.+|..++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22 11222222222211 10111 1223345566666677777777777666532 21111 23445556666
Q ss_pred hccCChHHHHHHHHHHHH---cCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740 261 GKAGMFDQMERVLSGMLE---SATCKPD--VWTMNTILSVFANKGQVDMMERWYEKFR 313 (502)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~---~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 313 (502)
...+++..|..++..+.. .....|+ ...+..++..+...+++.+|.+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666666666666665421 1111111 1234445555556666666666555554
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.96 E-value=1.1 Score=44.70 Aligned_cols=54 Identities=11% Similarity=-0.031 Sum_probs=38.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 010740 433 ISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKL 488 (502)
Q Consensus 433 ~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (502)
.+.|...|+++-|+++.++.... .| +-.+|..|..+|...|+++.|+-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44456677777777777777764 33 46677777778888888887777777664
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.67 E-value=7.1 Score=39.93 Aligned_cols=257 Identities=9% Similarity=0.007 Sum_probs=124.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CC-----CCHHHHHHHHHHH
Q 010740 225 CVDAMRFELIETLYQDMDERSVTPNT--VTQNIVLGGYGKAGMFDQMERVLSGMLESAT-CK-----PDVWTMNTILSVF 296 (502)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~~~l~~~~ 296 (502)
....|+.+++..+++.....+-..+. ..-..+.-+....|..+++..++...+.... +. +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44455556666665554432111122 2223333344555655667777776655321 00 1111122222222
Q ss_pred HhcCC-HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH--HHHHhcCC
Q 010740 297 ANKGQ-VDMMERWYEKFRNFGIDPETR--TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI--EAFSDMGD 371 (502)
Q Consensus 297 ~~~g~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~ 371 (502)
.-.|. -+++.+.+..+....- .... .-..|...+...|+-+....++..+.+.. +......+. -++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 22332 2455555555554221 1111 11233344556677777777777766542 223333333 34446788
Q ss_pred HhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 010740 372 AKHMEYTFEQMHAEGMKADTKT--FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVY 449 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 449 (502)
.+.+..+.+.+.... .|.... ...+.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888777631 222221 1234456667788766666777776532 233333333333444556666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHH
Q 010740 450 KRMKEKHCRPDSETFSIMTEAYAKEGMN-DKVYALEQEKL 488 (502)
Q Consensus 450 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 488 (502)
+.+.+.+ .|.+..-..+.-+....|.. .+|+..+..+.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6555542 23333333344444444443 45666666654
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.43 E-value=1.5 Score=40.09 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 010740 394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE-----KHCRPDSETFSIMT 468 (502)
Q Consensus 394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~~~l~ 468 (502)
...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445666677788888877777766653 56777788888888888888888888877653 37888777655444
Q ss_pred HHH
Q 010740 469 EAY 471 (502)
Q Consensus 469 ~~~ 471 (502)
..+
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.6 Score=46.48 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=31.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740 400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM 452 (502)
Q Consensus 400 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 452 (502)
-|...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++-+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445566666666666665542 445666666666666666666666665544
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.32 E-value=3.2 Score=44.23 Aligned_cols=131 Identities=10% Similarity=0.028 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 010740 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT----KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVI 433 (502)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 433 (502)
-|..++..+.+.+.++.+.++-+..++....-+. ..|..+.+.+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3555666666666666666665555543211111 1455566666666666666666655544322 234455555
Q ss_pred HHHHHcCCHHH------------HHHHHHH-HHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHh
Q 010740 434 SACIKADDLME------------MERVYKR-MKEK-HCRPDSETFSIMTEAYAKEGMNDKVYA-LEQEKLQM 490 (502)
Q Consensus 434 ~~~~~~g~~~~------------a~~~~~~-~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~ 490 (502)
..++..|..+. ..+++.. ++.. .+...+.-|..|-..+...|++.+|.+ +|+.+.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 55555444333 3333322 1111 111122335555555566666655443 44444443
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.26 E-value=3.7e-06 Score=76.52 Aligned_cols=222 Identities=16% Similarity=0.223 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740 179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLG 258 (502)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 258 (502)
+.+|..|..+..+.++..+|++.|-+. -|+..|..++.++.+.|.+++-.+.+...++..-. ...=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHH
Confidence 345555666666666666655544221 22233555666666666666666666555544222 223345666
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHH
Q 010740 259 GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD 338 (502)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 338 (502)
+|++.++..+.++++. .|+..-...+..-|...|.++.|.-+|..+-. |..|..++.+.|++.
T Consensus 125 ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 6666666554333221 24444455555666666666666555543221 223333444555555
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740 339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418 (502)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 418 (502)
.|.+.-. + .-++.||..+-.+|...+.+.-|.-+--.++- .|| -...++..|-..|.+++.+.+++...
T Consensus 188 ~AVdaAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4443211 1 11445555555555555555444333222221 111 11224444555555555555555444
Q ss_pred hcCCCCChHHHHHHHHHHHH
Q 010740 419 KLQIAENVSFYNAVISACIK 438 (502)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~ 438 (502)
... +....+|+.|.-.|++
T Consensus 257 glE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHS
T ss_pred CCC-chhHHHHHHHHHHHHh
Confidence 322 3344555555555544
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.05 E-value=1.5 Score=32.48 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 388 KADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 388 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555455555555544 335566666555544112344445555666666666666666666665
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.68 E-value=3.3 Score=31.12 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 388 KADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 388 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555666666554 3456666666655432223344445566667777777777777777663
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.56 E-value=2.4 Score=29.50 Aligned_cols=48 Identities=6% Similarity=0.104 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK 419 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 419 (502)
.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555554443
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.29 E-value=1.9 Score=29.99 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 159 QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
+.=+.++-++.+....+.|++.+..+.+++|.+.+++..|+++|+-++.. +.....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44566667777777777788888888888888888888888888777653 2233344555543
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.03 E-value=15 Score=35.85 Aligned_cols=308 Identities=8% Similarity=0.020 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740 91 IKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEM 170 (502)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 170 (502)
..++...+...++.......-...+..+.+.++|...+.++.. .+.+...-.....+....|+..+|......+
T Consensus 55 ~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 55 AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 4455666655433333222223445566677888877775543 1345555566667777777766665555555
Q ss_pred HHcCCCCCHHHHHHHHHHHH------------------hCCCHHHHHHHHHHhhcC-------------C---------C
Q 010740 171 VEEGIEPTPELYTALLAAYC------------------RNSLIDEAFVTLNQMKTL-------------P---------N 210 (502)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~~~------------------~~g~~~~a~~~~~~~~~~-------------~---------~ 210 (502)
-..| ...+..+..++..+. ..|+...|..+...+... + .
T Consensus 129 W~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 129 WLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART 207 (618)
T ss_dssp HSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc
Confidence 4443 222333333333333 344444444443332100 0 0
Q ss_pred CCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 010740 211 CQPDVYT---YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQ----NIVLGGYGKAGMFDQMERVLSGMLESATCK 283 (502)
Q Consensus 211 ~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 283 (502)
..++... +...+.-+.+ .+.+.|...+....+.+. .+.... ..+.......+...++...+...... .
T Consensus 208 ~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~ 282 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---S 282 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---C
T ss_pred cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---C
Confidence 0111111 1111222222 367888888887765432 233222 23333344445355666666665432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc------------C
Q 010740 284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL------------Q 351 (502)
Q Consensus 284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~ 351 (502)
.+.......+....+.|+++.|...|+.|.... .......--+..++...|+.++|..+|..+... |
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg 361 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIG 361 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcC
Confidence 344444455555667799999999998876522 123444556667778889999999888877542 2
Q ss_pred CCC-------C---hH-----HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010740 352 FPW-------T---SS-----TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV 414 (502)
Q Consensus 352 ~~~-------~---~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 414 (502)
.++ + .. .-...+..+...|....|...+..+... .+......+.......|..+.++...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 362 EEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 110 0 00 0112234566677777777777776653 23333334444445566666555433
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.76 E-value=13 Score=34.68 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcC-CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH--HH
Q 010740 183 TALLAAYCRNSLIDEAFVTLNQMKTL-PNCQPD---VYTYSTLIKACVDAMRFELIETLYQDMDE----RSVTPNT--VT 252 (502)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~--~~ 252 (502)
..|...+...|++.+|.+++..+... .+.... ...+...+..|...+++..|..++..+.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44555555556666666555554321 111111 22344455555555666666555555421 1111111 22
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH
Q 010740 253 QNIVLGGYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (502)
+...+..+...+++.+|-+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444455555555555555443
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.38 E-value=3.3 Score=35.03 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=74.3
Q ss_pred HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH
Q 010740 115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP----ELYTALLAAYC 190 (502)
Q Consensus 115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 190 (502)
+..+.+.|++++|++....-.+.. +-|...-..+++.+|-.|+++.|.+-++...+. .|+. ..|..+|.+-
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE- 78 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA- 78 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH-
Confidence 345678899999999887666653 778888999999999999999999998888776 3443 3444444431
Q ss_pred hCCCHHHHHHHHHHhhcC---CCCC-CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 010740 191 RNSLIDEAFVTLNQMKTL---PNCQ-PDVYTYSTLIKACV--DAMRFELIETLYQDMDER 244 (502)
Q Consensus 191 ~~g~~~~a~~~~~~~~~~---~~~~-~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 244 (502)
..=.++... +++. ....-...++.+.. ..|+.++|..+-.++.+.
T Consensus 79 ---------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ---------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111122211 1111 12223344555443 458888888887777553
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.34 E-value=17 Score=35.48 Aligned_cols=315 Identities=6% Similarity=-0.045 Sum_probs=151.2
Q ss_pred HHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740 116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL 194 (502)
Q Consensus 116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (502)
....+.|++..+..+-..+... +.... .|..+...+ .....++....+++.. +.+.....-+..+..+.+.++
T Consensus 14 ~~a~~~~~~~~~~~l~~~l~~~---pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 14 KQAWDNRQMDVVEQMMPGLKDY---PLYPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS---TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhhcCC---CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCC
Confidence 3455678888888876665432 22211 333333222 2224555555554432 112223344566777778888
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH--HHHH
Q 010740 195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ--MERV 272 (502)
Q Consensus 195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~--a~~~ 272 (502)
+...+.++.. .+.+...--....+....|+..+|......+-..|.. ....+..++..+.+.|.... ...-
T Consensus 88 w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R 160 (618)
T 1qsa_A 88 WRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLER 160 (618)
T ss_dssp HHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 8877765432 1345555555677777888887777777776655533 45567777777776664432 2222
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCHH---HHHHHHHHHHccCcHHHH
Q 010740 273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF---------GIDPETR---TFNILIGAYGKKRMYDKM 340 (502)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~---~~~~l~~~~~~~g~~~~a 340 (502)
++.+...+ +...-..++... . .+.....+.+..+... .+.++.. .+...+.-+.+ .+.+.|
T Consensus 161 ~~~al~~~----~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A 233 (618)
T 1qsa_A 161 IRLAMKAG----NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENA 233 (618)
T ss_dssp HHHHHHTT----CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHH
T ss_pred HHHHHHCC----CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHH
Confidence 23332221 111111111110 0 0000000001111110 0112221 11112222233 356777
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHH----HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740 341 SSVMEYMRKLQFPWTSSTYNNVIEAF----SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRL 416 (502)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 416 (502)
...+....+...- +......+-..+ ...+...++...+...... ..+.....-.+....+.|+++.|...++.
T Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~ 310 (618)
T 1qsa_A 234 RLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLAR 310 (618)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777766544322 333322222222 2233234455555554432 23443344444444566778887777776
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740 417 ASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE 454 (502)
Q Consensus 417 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 454 (502)
|.... .....-.--+..++...|+.++|..+|+.+..
T Consensus 311 l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 311 LPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp SCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 65422 11233344556667777888888777777764
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.01 E-value=4.3 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=20.6
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 414 VRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
++.+...++.|++.+....+++|.+.+|+.-|.++|+-.+.+
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333334444555555555555555555555555555544443
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.61 E-value=5 Score=31.10 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740 460 DSETFSIMTEAYAKEGMNDKVYALEQEK 487 (502)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (502)
+.+.-.-+..+|.+.|++++|+.+++..
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 3444455778889999999999988764
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.42 E-value=12 Score=32.67 Aligned_cols=22 Identities=9% Similarity=-0.136 Sum_probs=16.4
Q ss_pred HHHhcCCcHHHHHHHHHHHHhh
Q 010740 470 AYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
-|...|+...|..+++...+..
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 3556788888888888776654
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.16 E-value=3.8 Score=30.26 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740 159 QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK 223 (502)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 223 (502)
|.=+.++-++.+...++.|++.+....+++|-+.+++..|+.+|+-++.. +.+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34456666666666777788888888888888888888888888777653 2333445555543
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.02 E-value=4.3 Score=34.39 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=74.4
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChH----HHHHHHHHHHHcC
Q 010740 365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS----FYNAVISACIKAD 440 (502)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 440 (502)
...+.|+++++++....-++.. +-|...-..|+..+|-.|+++.|.+=++...+.. |+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH-----
Confidence 3456777888877777776653 3456666677788888888888888777776643 3322 23333322
Q ss_pred CHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCCcHHHHHHHHHHHHhhhhcccccc
Q 010740 441 DLMEMERVYKRMKEKHCRP-----DSETFSIMTEAYA--KEGMNDKVYALEQEKLQMLLEASGHWQ 499 (502)
Q Consensus 441 ~~~~a~~~~~~~~~~g~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (502)
+..-.+...-+-.| ...-...++.+.. ..|+.++|.++-+++.+..+...|.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 22222222222111 2333445555543 568999999999999888777776553
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.02 E-value=7.6 Score=28.76 Aligned_cols=69 Identities=12% Similarity=-0.027 Sum_probs=39.8
Q ss_pred CCCChHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 352 FPWTSSTYNNVIEAFSDMGD---AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
..|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+..|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33455555555555555543 3356666666665542123445556666677777777777777766663
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.15 E-value=7.5 Score=26.96 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=25.1
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740 259 GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG 316 (502)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 316 (502)
.+...|+|++|..+.+.. +.||...|-++.. .+.|-.+++...+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 345555555555554433 2455555554433 24555555555555554444
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.86 E-value=19 Score=31.42 Aligned_cols=84 Identities=10% Similarity=-0.073 Sum_probs=40.9
Q ss_pred HHHhcCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740 153 LLGKSGQPELARK----VFNEMVEEGIEPTPELYTALLAAYCRNSL--------IDEAFVTLNQMKTLPNCQPDVYTYST 220 (502)
Q Consensus 153 ~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
.+.+.|+...|-+ +++.+.+.+++++......++..+..... .++|+.+-.+.-. ...-|......
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~ 139 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNT 139 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHH
Confidence 3444555544433 45555556677776666666665544321 1122222222111 01235555666
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 010740 221 LIKACVDAMRFELIETLY 238 (502)
Q Consensus 221 ll~~~~~~~~~~~a~~~~ 238 (502)
+...|.+.+++.+|+..|
T Consensus 140 ~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 140 IGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHH
Confidence 666666666666665544
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.71 E-value=7.3 Score=26.99 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010740 230 RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY 309 (502)
Q Consensus 230 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 309 (502)
..++|..+-+.+...+. ...+-.+-+..+...|+|++|..+.+.. +.||...|-++.. .+.|-.+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 34555555554444432 1111112223345555666555544332 2455555554432 2555555555555
Q ss_pred HHHHhCC
Q 010740 310 EKFRNFG 316 (502)
Q Consensus 310 ~~~~~~~ 316 (502)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5555444
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.77 E-value=28 Score=31.66 Aligned_cols=92 Identities=10% Similarity=-0.001 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCCCHHHHHH---
Q 010740 221 LIKACVDAMRFELIETLYQDMDER--SVT---PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA-TCKPDVWTMNT--- 291 (502)
Q Consensus 221 ll~~~~~~~~~~~a~~~~~~~~~~--g~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~--- 291 (502)
++..|...|++.+|.+++..+.+. ... --..++-.-+..|...+++.++...+....... .+.+++.....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 455555566666665555555432 010 012334445556666666666666665553221 11122222111
Q ss_pred -HHHHHH-hcCCHHHHHHHHHHH
Q 010740 292 -ILSVFA-NKGQVDMMERWYEKF 312 (502)
Q Consensus 292 -l~~~~~-~~g~~~~a~~~~~~~ 312 (502)
-...+. ..++|.+|...|-+.
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHH
Confidence 112234 566777776666544
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.33 E-value=9.1 Score=35.50 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010740 147 YMKLLVLLGKSGQPELARKVFNEMVEEGI--EPTPELYTALLAAYCRNSLIDEAFVTLNQ 204 (502)
Q Consensus 147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 204 (502)
+..+...|.+.|+++.|.+.|.++...-. ..-...+-.+++.+...+++..+...+.+
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444444444555555544444443211 11123334444444444444444444444
No 266
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=81.98 E-value=0.27 Score=37.98 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=0.0
Q ss_pred CCcccccccccccccccCCCCCCCCCC
Q 010740 1 MGMASASASLSFSSSLLPSPLPHPHDT 27 (502)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~p~~~ 27 (502)
|.||++++-+.|+++++|+.+|+|..+
T Consensus 3 ~a~~~~~s~~~f~sf~~~sk~~~~~~~ 29 (190)
T 3bbn_U 3 QAQPSMASLSSFFSFLLPSKPPPPKPH 29 (190)
T ss_dssp ---------------------------
T ss_pred hhhhhhhhHHHHHHHhccCCCCCCCCC
Confidence 567776666778899999777765443
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.97 E-value=21 Score=33.06 Aligned_cols=99 Identities=16% Similarity=0.016 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHH--H
Q 010740 252 TQNIVLGGYGKAGMFDQMERVLSGMLESA-TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF---GIDPETRTF--N 325 (502)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~ 325 (502)
+...+...|.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+.++... +-.++...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44556666666666666666666664431 11222345555666666677777776666665431 212221110 0
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHc
Q 010740 326 ILIGAYGKKRMYDKMSSVMEYMRKL 350 (502)
Q Consensus 326 ~l~~~~~~~g~~~~a~~~~~~~~~~ 350 (502)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111223457777777776665443
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.08 E-value=17 Score=27.35 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=47.0
Q ss_pred CCChHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740 353 PWTSSTYNNVIEAFSDMGD---AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL 420 (502)
Q Consensus 353 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 420 (502)
.++..+--.+..++.+... ..+++.+++++.+.+..-.......|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566666666677776654 4467778888777543224456666777888888888888888888874
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.02 E-value=7.8 Score=31.14 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010740 404 AGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD 460 (502)
Q Consensus 404 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~ 460 (502)
.++..++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4446678888888877765443 44567777777788888888888888887777763
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.24 E-value=23 Score=28.46 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=46.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 010740 369 MGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN 425 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 425 (502)
.+...++.++|..|...|+--.. ..|......+...|++++|.++|+..++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44477999999999988875544 4667777888899999999999999998876664
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.70 E-value=15 Score=25.47 Aligned_cols=79 Identities=19% Similarity=0.059 Sum_probs=45.1
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 200 (502)
....++|..+-+++...+ . ...+-..-+..+...|++++|..+.+.+- .||...|-.|.. .+.|..+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 346677777777777654 1 22222223345566777777766655443 566666655433 36666666666
Q ss_pred HHHHhhcC
Q 010740 201 TLNQMKTL 208 (502)
Q Consensus 201 ~~~~~~~~ 208 (502)
.+.++...
T Consensus 90 rL~~la~s 97 (115)
T 2uwj_G 90 RLAGLGGS 97 (115)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 66566553
No 272
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=77.39 E-value=17 Score=30.21 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=58.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010740 101 KAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPF-YQP----KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGI 175 (502)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 175 (502)
......|...+..-+..+...+++++|+++.+...+.-. .+. +.......+..-.....-.-+..+.+.+. .
T Consensus 11 ~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~-- 87 (235)
T 2d2s_A 11 TAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S-- 87 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--
T ss_pred cchhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--
Confidence 345556667777778888889999999999986643200 111 11122233333333333334444444442 2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740 176 EPTPELYTALLAAYCRNSLIDEAFVTLNQM 205 (502)
Q Consensus 176 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 205 (502)
..+.......+..+.+.|+-++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 345566666667777777777777777554
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.28 E-value=16 Score=25.43 Aligned_cols=79 Identities=22% Similarity=0.112 Sum_probs=45.5
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 200 (502)
....++|..+-+++...+ . ...+-..-+..+...|++++|..+.+.+- .||...|-.|.. .+.|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 346677777777777654 1 22222233345566777777776665543 566666655543 35566666666
Q ss_pred HHHHhhcC
Q 010740 201 TLNQMKTL 208 (502)
Q Consensus 201 ~~~~~~~~ 208 (502)
.+.++...
T Consensus 91 rL~~la~s 98 (116)
T 2p58_C 91 RLNRLARS 98 (116)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 66566543
No 274
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.89 E-value=49 Score=30.03 Aligned_cols=169 Identities=10% Similarity=-0.021 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH-
Q 010740 179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD---VYTYSTLIKACVDA-MRFELIETLYQDMDERSVTPNTVTQ- 253 (502)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~- 253 (502)
......|...|.+.|+.++..+++......-+.-+- ......+++.+... +..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 455677888888889988888888876543111122 23455667766654 3333333333333321000 11122
Q ss_pred -----HHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 010740 254 -----NIVLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWYEKFRNF--GIDPETR 322 (502)
Q Consensus 254 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 322 (502)
..++..|...|++.+|.+++..+.+.-.-..+ ...+..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25677777888888887777777654211111 123445556677777777777777666532 2223333
Q ss_pred HHHHH----HHHHH-ccCcHHHHHHHHHHHH
Q 010740 323 TFNIL----IGAYG-KKRMYDKMSSVMEYMR 348 (502)
Q Consensus 323 ~~~~l----~~~~~-~~g~~~~a~~~~~~~~ 348 (502)
....+ ...+. ..++|..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22211 12234 5677777776665543
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.41 E-value=48 Score=29.63 Aligned_cols=64 Identities=6% Similarity=0.125 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--cHHHHHHHHHHHHHcCCC
Q 010740 289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKR--MYDKMSSVMEYMRKLQFP 353 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~ 353 (502)
...++.-|...|+.++|.+.++++.... .....+...+..++-+.+ ..+...+++..+...++-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 4667888888899999999998885311 112334445555555543 245567777777776554
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.76 E-value=50 Score=29.12 Aligned_cols=83 Identities=16% Similarity=0.038 Sum_probs=40.1
Q ss_pred HHhcCChHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740 154 LGKSGQPELAR----KVFNEMVEEGIEPTPELYTALLAAYCRNSL--------IDEAFVTLNQMKTLPNCQPDVYTYSTL 221 (502)
Q Consensus 154 ~~~~g~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~~l 221 (502)
+.+.|+...|- -+++.+.+.++++|......++..+..... .++|+.+=.+.-. .-.-|......+
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~i 142 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGD--YPAGDPELHHVV 142 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSS--CTTCCHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHH
Confidence 34445544333 333555555666776666666665554432 1122222222111 112345555556
Q ss_pred HHHHHhcCCHHHHHHHH
Q 010740 222 IKACVDAMRFELIETLY 238 (502)
Q Consensus 222 l~~~~~~~~~~~a~~~~ 238 (502)
...|.+.+++.+|+..|
T Consensus 143 g~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 143 GTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHH
Confidence 66666666666666555
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.60 E-value=15 Score=27.99 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010740 410 VISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459 (502)
Q Consensus 410 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p 459 (502)
+.++|..|...|+-.. ...|......+...|++++|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666655554332 3345555555666666666666666666655555
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.95 E-value=48 Score=26.59 Aligned_cols=152 Identities=14% Similarity=0.051 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
+...-...+..+.+.|..+ +...+..+.. .++..+-...+.++...+.. ++...+..+.. .++...-...+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~ 102 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAA 102 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHH
Confidence 4445555555555555532 2222223332 34555555566666666543 23333333333 25555555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (502)
.++.+.++.+....+ ..+.. .++..+-...+.++.+.|..+ +...+..+++ .++...-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 103 VALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHhCcHHHHHHH-HHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-
Confidence 666666654333222 23332 235555555555555555533 3333444433 3455555555555555554
Q ss_pred HHHHHHHHHHH
Q 010740 303 DMMERWYEKFR 313 (502)
Q Consensus 303 ~~a~~~~~~~~ 313 (502)
.++...+..+.
T Consensus 173 ~~~~~~L~~~l 183 (211)
T 3ltm_A 173 ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33444444443
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.78 E-value=28 Score=26.97 Aligned_cols=74 Identities=7% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010740 387 MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET 463 (502)
Q Consensus 387 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 463 (502)
.+-|..-+..-+..--.. +.+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-+|-...
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 455665444434322222 346778888888776443 45577777788888999999999998888887775443
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.74 E-value=33 Score=32.34 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCH--HHH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740 179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV--YTY-STLIKACVDAMRFELIETLYQDMDER 244 (502)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 244 (502)
...+|.+++.|...+.++.|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4678889999999999999999998874210101221 122 23455667788999999888887765
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.08 E-value=50 Score=26.18 Aligned_cols=111 Identities=14% Similarity=0.027 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010740 177 PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIV 256 (502)
Q Consensus 177 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 256 (502)
++..+-...+.++...|.. ++...+..+.. .++...-...+.++.+.++.+....+.. +.. .++..+-...
T Consensus 57 ~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a 127 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAA 127 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHH
Confidence 4444545555555555543 23333333332 2455555555555555555433222222 222 2344444455
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010740 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQ 301 (502)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (502)
+.++.+.++.+ +...+..++. .++...-...+.++...|+
T Consensus 128 ~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 128 AFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHTCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc
Confidence 55555555432 3333333332 2344444444555555544
No 282
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=62.37 E-value=83 Score=27.75 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=10.6
Q ss_pred HHhcCChHHHHHHHHHHH
Q 010740 401 YANAGLFHKVISSVRLAS 418 (502)
Q Consensus 401 ~~~~g~~~~a~~~~~~~~ 418 (502)
|...+++..|..+++...
T Consensus 197 yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 455666777766655443
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.47 E-value=54 Score=24.97 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 010740 375 MEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424 (502)
Q Consensus 375 a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 424 (502)
+.++|..|..+|+--.. ..|......+...|++++|.++|+..++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55555555555543322 234444445555555666666555555554444
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=59.63 E-value=75 Score=26.36 Aligned_cols=22 Identities=9% Similarity=-0.145 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHH
Q 010740 362 VIEAFSDMGDAKHMEYTFEQMH 383 (502)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~m~ 383 (502)
-++.+....++++|.+++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3566666677777777666554
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=58.64 E-value=69 Score=25.63 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=27.2
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhcCCCC
Q 010740 369 MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL-----FHKVISSVRLASKLQIAE 424 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~ 424 (502)
-.+.+.|+-.+-+|++.| .|....-..++.+....|. ...|...++.....|.+-
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 456666666666666666 4444444444444444443 223334444444455433
No 286
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=57.77 E-value=1.2e+02 Score=28.13 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 222 (502)
-...|..-.+.+...|++++|.++-..... |+-.+..|.+.+-..=..-|+..--+.+|..+.+.+ ..+..----++
T Consensus 360 Ad~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g--~Ln~~ESlEl~ 436 (494)
T 1bpo_A 360 AEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG--QLNKYESLELC 436 (494)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC--ccchHHhhHHh
Confidence 344555555556666666666655554432 344555555544444334455555555555555432 33433333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740 223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
+.....|+.+..++.+.+ ..+..+...-..+ +..+..-|+.+|.+.
T Consensus 437 r~vL~q~r~~llekWl~e---~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 437 RPVLQQGRKQLLEKWLKE---DKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHTTCHHHHHHHHHH---TCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhc---CCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 444555555555444433 2233333332222 223445555555544
No 287
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=54.95 E-value=75 Score=25.35 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=9.5
Q ss_pred CCHhHHHHHHHHHHHcCCCCC
Q 010740 370 GDAKHMEYTFEQMHAEGMKAD 390 (502)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~p~ 390 (502)
.+.+.|+-.+-+|++.|-.|.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444443333
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.63 E-value=72 Score=24.64 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChH
Q 010740 373 KHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS 427 (502)
Q Consensus 373 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 427 (502)
+...++|..|..+|+--.. ..|......+...|++.+|.++|+..++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4477888888888875543 456666777778899999999999888887666544
No 289
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=53.78 E-value=9.6 Score=23.53 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=20.8
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHH
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEG 145 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~ 145 (502)
.-+++.|+..|..+...+.++|+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 5699999999999988887777643
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.44 E-value=1.1e+02 Score=26.60 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc--HHHHHHHHHHHHHcCCC
Q 010740 289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM--YDKMSSVMEYMRKLQFP 353 (502)
Q Consensus 289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 353 (502)
...++.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+...+++..+.+.++-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 4567788888899999999998885211 1112334445555555432 45566777777766554
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.41 E-value=1.7e+02 Score=28.69 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=16.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHhhc
Q 010740 185 LLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
+|--|.++|++++|.++.++...
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGG
T ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Confidence 45556788888888888777653
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.54 E-value=66 Score=23.60 Aligned_cols=68 Identities=10% Similarity=0.201 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ--PELARKVFNEMVEEGIEPT 178 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 178 (502)
..+..++..|...|+.++|.+.++.+.... + ....+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 8 kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 8 KEIDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCc-c-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456668888989999999999999875321 1 112334444455555432 4567778888877665443
No 293
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=51.44 E-value=95 Score=25.06 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=15.7
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740 370 GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403 (502)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 403 (502)
.+.+.|+-.+-+|++.|-.|....-..++.+.-.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 4555555555555555544443333333333333
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.73 E-value=53 Score=25.02 Aligned_cols=67 Identities=10% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ--PELARKVFNEMVEEGIEP 177 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~ 177 (502)
..+..++..|...|+.++|.+.++.+.... + ....+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCc-c-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456668888889999999999999875321 1 112334444455554332 456777777777666543
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.21 E-value=1.6e+02 Score=30.63 Aligned_cols=108 Identities=6% Similarity=-0.109 Sum_probs=65.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------------
Q 010740 185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVT----------------- 247 (502)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----------------- 247 (502)
++..+...|.++-|.++...+ +.+...--.+..+|...|++++|...|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccC
Confidence 455555666666555443322 23333333455666667777777777765421 111
Q ss_pred ------CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcC
Q 010740 248 ------PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDV----WTMNTILSVFANKG 300 (502)
Q Consensus 248 ------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 300 (502)
....-|..++..+-+.+.++.+.++-+..++... ..|. ..|..+.++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 1123678899999999999999999988876532 1232 35677777776654
No 296
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.78 E-value=82 Score=23.82 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740 345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
+.+.+.|.. ....=..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 16 ~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345556665 33333445555656666777888888887776667777777777777777643
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.64 E-value=83 Score=23.58 Aligned_cols=60 Identities=8% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740 346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 406 (502)
.+.+.|...+.. =..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566654332 233444455555566777777777776666677777667777766664
No 298
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.12 E-value=72 Score=23.94 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=19.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010740 434 SACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475 (502)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 475 (502)
..+...+..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333333444445555555554444444444444444444444
No 299
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=46.37 E-value=39 Score=21.24 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN 192 (502)
Q Consensus 146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (502)
.++.+++.++...-.+.+...++++.+.| ..+..+|-.-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34556666666666777777777777766 46666666656555543
No 300
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.68 E-value=1.2e+02 Score=24.16 Aligned_cols=142 Identities=13% Similarity=-0.023 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010740 177 PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIV 256 (502)
Q Consensus 177 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 256 (502)
++..+-...+..+.+.|.. .+...+..+.. .++...-...+.++...++.+....+.+ +.. .++..+-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHH
Confidence 5566666666666666653 33444444443 2455555566666666665433333333 322 2455566666
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 010740 257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336 (502)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 336 (502)
+.++.+.++.+ +...+..+++ .++...-...+.++...|+.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 66666666543 3333333433 345555555555555555533 3333333332 3444444455555555444
No 301
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.37 E-value=73 Score=24.10 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010740 433 ISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475 (502)
Q Consensus 433 ~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 475 (502)
+..+...+..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333334444445555555554444444444444444444444
No 302
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=44.03 E-value=88 Score=23.10 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=36.5
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740 347 MRKLQFPWTSSTYNNVIEAFSDMG-DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
+.+.|.+.+.. =..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45566654333 233445555555 5667778888877776666777777777777666643
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.19 E-value=58 Score=24.47 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010740 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475 (502)
Q Consensus 442 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 475 (502)
.-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555555544445554444444444444
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.56 E-value=98 Score=22.68 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 010740 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR--FELIETLYQDMDERSVT 247 (502)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~ 247 (502)
..++.-|...|+.++|.+.++++... . -........+..++-+.++ .+.+.+++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p-~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP-H-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG-G-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC-c-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44555666666666666666665420 0 1112222333333333221 34455555555555443
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.04 E-value=1.2e+02 Score=24.82 Aligned_cols=106 Identities=11% Similarity=0.177 Sum_probs=62.2
Q ss_pred HhhHHHHHHHHHHHHhhhcH-HHHHHHHHH----HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-
Q 010740 105 KAWVNTVAETFSDHVLKKQW-FQALQVFEM----LKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT- 178 (502)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~-~~A~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 178 (502)
..|..-+..+...+-..+.. ..-..+++. ......++-|..-...-+. |+.. .+.+..+|..|..+|+--.
T Consensus 73 ~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~ 149 (223)
T 4aez_C 73 QVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQES 149 (223)
T ss_dssp HHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTB
T ss_pred HHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhH
Confidence 45666666666666554421 011122222 2222223445443333332 2222 2467789999998877544
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCC
Q 010740 179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD 214 (502)
Q Consensus 179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 214 (502)
...|......+...|++.+|.++|+.-.+. +..|-
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 566788888888999999999999887664 34453
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.97 E-value=72 Score=23.97 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740 346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 406 (502)
.+.+.|.+++.. =..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 445556654433 233344444444 56777777777776666677777666777766664
No 307
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.26 E-value=2.2e+02 Score=26.34 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=19.4
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010740 369 MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG 405 (502)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 405 (502)
.++.+.|+..+.+|.+.|..|....-..+..+....|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 3566666666666666665544443344444443333
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=41.20 E-value=92 Score=23.51 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=37.3
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740 346 YMRKLQFPWTSSTYNNVIEAFSDMG-DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
.+.+.|...+..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455666544332 23444444444 5667777887777776666777777777777776653
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.17 E-value=75 Score=24.16 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhh
Q 010740 183 TALLAAYCRNSLIDEAFVTLNQMK 206 (502)
Q Consensus 183 ~~l~~~~~~~g~~~~a~~~~~~~~ 206 (502)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555656666666666666653
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.55 E-value=1.1e+02 Score=23.43 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCh
Q 010740 346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE--GMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
.+.+.|.+.+. .=..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 23 ~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 23 ILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555666433 3344556666666677777777777766 6566777777777777776643
No 311
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.37 E-value=78 Score=23.40 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=26.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740 382 MHAEGMKADTKTFCCLINGYANAG-LFHKVISSVRLASKLQIAENVSFYNAVISACIKADD 441 (502)
Q Consensus 382 m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 441 (502)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--+..+.+.|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4455555554322 2233333333 444555666655554433444444444444444443
No 312
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.52 E-value=73 Score=22.99 Aligned_cols=42 Identities=5% Similarity=-0.059 Sum_probs=22.7
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740 414 VRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK 455 (502)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 455 (502)
|+.+....+.++...--.-+..+...++++.|..+.-.+...
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 344444455444332222233345677888888887777653
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.13 E-value=2.3e+02 Score=25.30 Aligned_cols=66 Identities=9% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--HhHHHHHHHHHHHcCCCCC
Q 010740 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD--AKHMEYTFEQMHAEGMKAD 390 (502)
Q Consensus 324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 390 (502)
...++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+....++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 456666777777777777777766532111 22333444444444322 3446666666666654433
No 314
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.03 E-value=81 Score=23.85 Aligned_cols=34 Identities=9% Similarity=-0.083 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC
Q 010740 407 FHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440 (502)
Q Consensus 407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 440 (502)
.-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555544433333333333344444444
No 315
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=37.00 E-value=63 Score=18.89 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=14.8
Q ss_pred hhcHHHHHHHHHHHHhCCCCC
Q 010740 121 KKQWFQALQVFEMLKEQPFYQ 141 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~ 141 (502)
.++..+|+++++.+.+.|.++
T Consensus 6 ~RDv~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 456777888888887777543
No 316
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.33 E-value=1.1e+02 Score=23.58 Aligned_cols=59 Identities=8% Similarity=0.033 Sum_probs=26.1
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCChHHHHHHHHHHHHcCCH
Q 010740 383 HAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL--QIAENVSFYNAVISACIKADDL 442 (502)
Q Consensus 383 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 442 (502)
.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|..--+..+...|-+
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455554432 22334444444455555555555544 3333433333334444444433
No 317
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.15 E-value=78 Score=23.21 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555666778888888888877777788877778888777753
No 318
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=33.17 E-value=19 Score=27.47 Aligned_cols=68 Identities=13% Similarity=0.259 Sum_probs=35.5
Q ss_pred CCccHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHh---hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 010740 87 KRTPIKNLKKKLERK-AKAKAWVNTVAETFSDHVL---KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLL 154 (502)
Q Consensus 87 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (502)
...++.++.+.+.+. .....-...+...|..++. ...+++|++++..+++.-...-.+..||..+..+
T Consensus 33 ~~nPv~DFk~lL~~~~~~~~~A~~qM~~vI~~Ll~~s~~~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~L 104 (152)
T 1rw2_A 33 SVNPAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 104 (152)
T ss_dssp SSCTTHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 334555555555431 1122223444455555544 4578888888887765320011445777766554
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.88 E-value=71 Score=23.79 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740 361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF 407 (502)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 407 (502)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555555566677888888888777677777777777777777643
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.36 E-value=2.1e+02 Score=23.44 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010740 287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319 (502)
Q Consensus 287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 319 (502)
..|......+...|++.+|.++|+.-++.+-.|
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444444444444444444444444443333
No 321
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.27 E-value=3.3e+02 Score=25.75 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCCh--HHH-HHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740 322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQF-PWTS--STY-NNVIEAFSDMGDAKHMEYTFEQMHAE 385 (502)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~ 385 (502)
..++.++..|...+.++.|..+..+..--.. .++. ..| -.+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4556666777777777777777665531100 0011 111 12234455566677776666665543
No 322
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.83 E-value=2.7e+02 Score=24.54 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCC
Q 010740 109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKS-GQPELARKVFNEMVEEGI 175 (502)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~ 175 (502)
..+..++..|...|+.++|...++.+.... +. ...+...+..++-+. ...+.+..++..+.+.|+
T Consensus 12 k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~-~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 12 KKSKAIIEEYLHLNDMKEAVQCVQELASPS-LL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCCGG-GH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 566678889999999999999998875321 11 111222222222221 123455666666666554
No 323
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=31.11 E-value=15 Score=26.68 Aligned_cols=52 Identities=15% Similarity=0.334 Sum_probs=28.7
Q ss_pred hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHcCC
Q 010740 121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLG---KSGQPELARKVFNEMVEEGI 175 (502)
Q Consensus 121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~ 175 (502)
...+++|++++..+++.-...-.+..||..+..+- ..++. ...+..+.+.++
T Consensus 40 ~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~l 94 (120)
T 1q2z_A 40 TPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 45788888888877653211124567777776553 23333 334444554443
No 324
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.36 E-value=2.2e+02 Score=23.12 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=10.5
Q ss_pred HHhccCChHHHHHHHHHHH
Q 010740 259 GYGKAGMFDQMERVLSGML 277 (502)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~ 277 (502)
.|.+.|.+++|.+++++..
T Consensus 123 VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHS
T ss_pred HHHHhcchHHHHHHHHHHh
Confidence 3555555555555555553
No 325
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.33 E-value=1e+02 Score=20.94 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010740 429 YNAVISACIKADDLMEMERVYKRM 452 (502)
Q Consensus 429 ~~~l~~~~~~~g~~~~a~~~~~~~ 452 (502)
+.-....+.+.|++++|++..+..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 444555566666666666655444
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.15 E-value=1.9e+02 Score=22.25 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=7.0
Q ss_pred CChHHHHHHHHHHH
Q 010740 405 GLFHKVISSVRLAS 418 (502)
Q Consensus 405 g~~~~a~~~~~~~~ 418 (502)
|++-+|-++++..=
T Consensus 46 g~yfeaHEvLEe~W 59 (161)
T 2ijq_A 46 GEFHESHDCFEDEW 59 (161)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHH
Confidence 55555555554443
No 327
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.98 E-value=2e+02 Score=22.48 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-----------------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740 435 ACIKADDLMEMERVYKRMKEKHCRPD-----------------SETFSIMTEAYAKEGMNDKVYALEQEKLQMLL 492 (502)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~g~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (502)
+|-+..++..|+.-++.+.+..+.-| ...++.+...|.+.|+.++|+..+..-....+
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.87 E-value=76 Score=23.25 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=20.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010740 433 ISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475 (502)
Q Consensus 433 ~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 475 (502)
+..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344444455555555555544445555444444555444
No 329
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.44 E-value=5e+02 Score=26.93 Aligned_cols=29 Identities=3% Similarity=-0.097 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740 463 TFSIMTEAYAKEGMNDKVYALEQEKLQML 491 (502)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (502)
.|..++..+-+.+.++-++++.+.+++..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 56677777777777777777777777653
No 330
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.20 E-value=4.9e+02 Score=26.80 Aligned_cols=89 Identities=12% Similarity=0.144 Sum_probs=49.5
Q ss_pred HHHHHHhCCC---HHHHHHHHHHhhcCC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740 185 LLAAYCRNSL---IDEAFVTLNQMKTLP---NCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLG 258 (502)
Q Consensus 185 l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 258 (502)
++...|..|. .++|.+.|+.....+ .++||... .+.....+.|..++-..+++...... +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 4444555554 456677777654421 23455332 22333345566666666666666542 3344456677
Q ss_pred HHhccCChHHHHHHHHHHHH
Q 010740 259 GYGKAGMFDQMERVLSGMLE 278 (502)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~ 278 (502)
+++...+.+...++++..+.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhC
Confidence 77777777777777776654
No 331
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.48 E-value=1.3e+02 Score=24.35 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=11.5
Q ss_pred HHhhhcHHHHHHHHHHHHhCC
Q 010740 118 HVLKKQWFQALQVFEMLKEQP 138 (502)
Q Consensus 118 ~~~~~~~~~A~~~~~~~~~~~ 138 (502)
.+..|+.+....+++.+.+.+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 345566666666666544443
No 332
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.12 E-value=1.3e+02 Score=19.49 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010740 372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG 405 (502)
Q Consensus 372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 405 (502)
.-.+.++++.+.+.+...+..|....+..+...|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3445555555555444445555555555554444
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.81 E-value=33 Score=21.07 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740 162 LARKVFNEMVEEGIEPTPELYTALLAAY 189 (502)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (502)
+|.+.|.+|++..-.++..+|...++.+
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 4444444444433233344444444444
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.81 E-value=67 Score=23.92 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010740 442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475 (502)
Q Consensus 442 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 475 (502)
.-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444433334444333334444333
No 335
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.20 E-value=3.6e+02 Score=24.29 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=10.6
Q ss_pred HHHHHhcCCHhHHHHHHHHH
Q 010740 363 IEAFSDMGDAKHMEYTFEQM 382 (502)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~m 382 (502)
+..+....+.+++.+.++.+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~ 102 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDL 102 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHH
Confidence 33444455566666665554
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.63 E-value=4.1e+02 Score=24.71 Aligned_cols=111 Identities=12% Similarity=0.051 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010740 158 GQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETL 237 (502)
Q Consensus 158 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 237 (502)
.+.+-|.++-. +.|++--...|..-...+...|++++|.++-..... |+-.+..|.+.+-.+=..-|...-.+.+
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 45555544433 335555556676677788899999999999888776 6677888877666655555666667777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740 238 YQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS 274 (502)
Q Consensus 238 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (502)
|..+.+.|- .+..----+++.-...|+.+-.++++.
T Consensus 418 F~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 418 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 777777653 344444445555555666555444443
No 337
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.17 E-value=5e+02 Score=25.52 Aligned_cols=28 Identities=4% Similarity=-0.073 Sum_probs=18.6
Q ss_pred CHHHHHHHHHH-----HHhcCCcHHHHHHHHHH
Q 010740 460 DSETFSIMTEA-----YAKEGMNDKVYALEQEK 487 (502)
Q Consensus 460 ~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 487 (502)
+..|+..|+.. +...|+++.|++.+++.
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 34456555432 36788999998888873
No 338
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.79 E-value=1.8e+02 Score=24.11 Aligned_cols=7 Identities=0% Similarity=0.007 Sum_probs=2.8
Q ss_pred HhcCChH
Q 010740 155 GKSGQPE 161 (502)
Q Consensus 155 ~~~g~~~ 161 (502)
++.|+++
T Consensus 13 ~~~g~~~ 19 (285)
T 1wdy_A 13 VQNEDVD 19 (285)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3344433
No 339
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.30 E-value=3.5e+02 Score=23.44 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 182 YTALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 182 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
...++.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45678888888999999988888753
No 340
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.14 E-value=1.1e+02 Score=25.64 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=10.3
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q 010740 185 LLAAYCRNSLIDEAFVTLNQ 204 (502)
Q Consensus 185 l~~~~~~~g~~~~a~~~~~~ 204 (502)
.+...++.|+.+....+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34445556666555544443
No 341
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.85 E-value=3.6e+02 Score=23.72 Aligned_cols=24 Identities=4% Similarity=0.160 Sum_probs=15.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH
Q 010740 253 QNIVLGGYGKAGMFDQMERVLSGM 276 (502)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~ 276 (502)
...++.-|...|+.++|.+.++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 445566666666666666666655
No 342
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.52 E-value=1.1e+02 Score=23.78 Aligned_cols=16 Identities=6% Similarity=-0.078 Sum_probs=8.8
Q ss_pred HHhCCCHHHHHHHHHH
Q 010740 189 YCRNSLIDEAFVTLNQ 204 (502)
Q Consensus 189 ~~~~g~~~~a~~~~~~ 204 (502)
.+..|+.+....++..
T Consensus 12 A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 12 AANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHc
Confidence 3455666666555543
No 343
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.39 E-value=65 Score=19.26 Aligned_cols=11 Identities=0% Similarity=-0.091 Sum_probs=5.1
Q ss_pred cHHHHHHHHHH
Q 010740 477 NDKVYALEQEK 487 (502)
Q Consensus 477 ~~~A~~~~~~~ 487 (502)
.+.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 344
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.23 E-value=1.4e+02 Score=18.84 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE 474 (502)
Q Consensus 429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 474 (502)
++.++..+++..-+++++..++++.+.|. .+...|---++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45555666666666666666666666653 3556665555555443
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.89 E-value=2.6e+02 Score=21.45 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=14.9
Q ss_pred hcCCHhHHHHHHHHHHHcCCCC
Q 010740 368 DMGDAKHMEYTFEQMHAEGMKA 389 (502)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~p 389 (502)
..|++-+|-++|+..-.....+
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~ 65 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRG 65 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSS
T ss_pred hCCCchHHHHHHHHHHHhcCCC
Confidence 4488888888888776654334
No 346
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.87 E-value=2.2e+02 Score=26.47 Aligned_cols=61 Identities=10% Similarity=0.181 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--------CHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 430 NAVISACIKADDLMEMERVYKRMKEKHCRP--------DSETFS-IMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--------~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
+.|...|.+.|+..-+..+++.+...+.-| ...+|. .+.+.+...+++.+|.+.+.++...
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 444445555555555555555444433211 122333 3344455566666666666666655
No 347
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.77 E-value=1.3e+02 Score=20.56 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010740 158 GQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEA 198 (502)
Q Consensus 158 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 198 (502)
.+.+.|.++++.+..+| ..+|..++.++...|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 35666666666666554 34566666666555554444
No 348
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.30 E-value=36 Score=28.44 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=12.9
Q ss_pred HHHHhcCCcHHHHHHHHHHHHh
Q 010740 469 EAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
...++.|+.+-+..++++-...
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCCc
Confidence 3445667776666666655443
No 349
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.08 E-value=1.2e+02 Score=23.65 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID 196 (502)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 196 (502)
...++.++..++...-.+.+...++++...| ..+..+|-.-++.+++..-+.
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~ 162 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLV 162 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888 577888877777776654333
No 350
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.99 E-value=3.4e+02 Score=22.06 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740 160 PELARKVFNEMVEEGIEPTPEL--------YTALLAAYCRNSLIDEAFVTLNQMKT 207 (502)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~ 207 (502)
++.|+.+|+.+.+.- ..+... -...+..|.+.|.+++|.++|++...
T Consensus 88 LESAl~v~~~I~~e~-~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEF-TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 456777777776653 211111 12334556677777777777777665
No 351
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.84 E-value=1.1e+02 Score=20.04 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740 466 IMTEAYAKEGMNDKVYALEQEKLQM 490 (502)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (502)
.+.+-|+..|++|.|+.+|+.+++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3455566666666666666666554
No 352
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.63 E-value=3.7e+02 Score=22.35 Aligned_cols=175 Identities=11% Similarity=-0.035 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC----HHHHHHHHHH-hhcCCCCCCCHHH
Q 010740 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL----IDEAFVTLNQ-MKTLPNCQPDVYT 217 (502)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~-~~~~~~~~~~~~~ 217 (502)
+...-...+.++...|.. .+...+..+.. .++...-...+.++...|. ....+.++.. +.. .++...
T Consensus 36 ~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~----d~~~~v 107 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQ-DAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN----DKSACV 107 (280)
T ss_dssp SHHHHHHHHHHHHHHCCH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH----CSCHHH
T ss_pred CHHHHHHHHHHHHccCCc-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc----CCCHHH
Confidence 444444455555555543 23333333433 3455555555566666553 2223334432 222 245444
Q ss_pred HHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010740 218 YSTLIKACVDAMR-----FELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTI 292 (502)
Q Consensus 218 ~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 292 (502)
-...+.++...+. ...+...+..+.. .++..+-...+.++...|+.+ +...+..+++ .++...-...
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a 179 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNWA 179 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHHH
Confidence 4444555544331 2233333333332 245555555556666655532 3333333333 2344443444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 010740 293 LSVFANKG-QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336 (502)
Q Consensus 293 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 336 (502)
+.++...| +...+...+..+.. .++..+-...+.++.+.|+
T Consensus 180 ~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 180 AFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC
Confidence 44444433 12233333333332 2334444444444444443
No 353
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.58 E-value=3.9e+02 Score=25.56 Aligned_cols=53 Identities=11% Similarity=0.285 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740 215 VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269 (502)
Q Consensus 215 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a 269 (502)
..-..-++..|.+.|-.+.|.++++.+-..-+. +...+ .-+..|.++|+++.+
T Consensus 516 ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 516 NDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 334556777778888888888887777665333 34445 445567777777654
Done!