BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010741
         (502 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0WMN5|Y3913_ARATH Uncharacterized protein At3g49140 OS=Arabidopsis thaliana
           GN=At3g49140 PE=1 SV=2
          Length = 499

 Score =  432 bits (1111), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/517 (47%), Positives = 340/517 (65%), Gaps = 45/517 (8%)

Query: 3   MIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGV-HVTSRRPF-PSGCSNVPWNRFR 60
           MIES +AVR   G  FCSS AL   R+   +E+     H  SRR F P    ++  + F 
Sbjct: 1   MIESVMAVRLSTG--FCSSTALLQYRTAPSSEEGGNCFHYASRRVFQPQRIHHIDGSGFL 58

Query: 61  RVNGNPCVTRSNVTKKRIQA------SASDPVKKNERTSYHPFEDIADSTLKNGEEARLT 114
           + N +  +TR ++ K R QA      SASDP K+  ++ YHP E+I  S  +N  ++RL+
Sbjct: 59  KYNSD-YITRKHLRKNRTQATAEYVDSASDPEKQTGKSRYHPSEEIRASLPQNDGDSRLS 117

Query: 115 AAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSL 174
            AET+RTIIEVN+  TLM T     G HENI+WPD+PY+TD++GN+Y QVK +ED++QS+
Sbjct: 118 PAETTRTIIEVNNKGTLMLTGSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSV 177

Query: 175 ISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDY 234
            SENN+VQVI+GFDT EMIKEMEL GLS+ DF        +++ ++  +D+ ED  +++ 
Sbjct: 178 TSENNYVQVIVGFDTMEMIKEMELMGLSDSDF--------ETEDDESGDDDSEDTGEDED 229

Query: 235 DENWVNVL----------------EDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVIS 278
           +E WV +L                +D+ D DE LGDWA LETMRS HPM+FAK+++EV S
Sbjct: 230 EEEWVAILEDEDEDDDDDDDDDEDDDDSDSDESLGDWANLETMRSCHPMFFAKRMTEVAS 289

Query: 279 DDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHV 338
           +DP+DWM+QP AG+ IQGLL   L+E++SDIQ+  + +         N     N++  ++
Sbjct: 290 NDPVDWMDQPSAGLAIQGLLSHILVEDYSDIQKKLADS---------NSTTNGNKDAENL 340

Query: 339 INGHRNESEPSRNGSE-ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQ 397
           ++   + S+   + SE +S +D+K  N  +FYKLEM +IQ I A   Q  V++ED RKAQ
Sbjct: 341 VDKLEDNSKAGGDESEIDSSQDEKARNVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQ 400

Query: 398 PDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQ 457
           PD IAH++A IISRL+  G+K T+ALKSLCWR   IQ EE  +IG+DS+GFDLR+CAG +
Sbjct: 401 PDAIAHASAEIISRLEESGDKITEALKSLCWRHNSIQAEEVKLIGIDSLGFDLRLCAGAK 460

Query: 458 IQTLRFAFNTRATSEYSAERQLNDLLFPRIHQKPQKR 494
           I++LRFAF+TRATSE +AE Q+  LLFP+ +Q  Q +
Sbjct: 461 IESLRFAFSTRATSEENAEGQIRKLLFPKTNQSTQPK 497


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,921,344
Number of Sequences: 539616
Number of extensions: 8736332
Number of successful extensions: 123039
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 736
Number of HSP's that attempted gapping in prelim test: 69727
Number of HSP's gapped (non-prelim): 24747
length of query: 502
length of database: 191,569,459
effective HSP length: 122
effective length of query: 380
effective length of database: 125,736,307
effective search space: 47779796660
effective search space used: 47779796660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)