Query 010741
Match_columns 502
No_of_seqs 149 out of 302
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10615 DUF2470: Protein of u 99.7 9.8E-18 2.1E-22 139.1 7.5 80 398-483 2-83 (83)
2 PF13883 Pyrid_oxidase_2: Pyri 99.5 9.9E-14 2.1E-18 129.2 6.8 164 111-395 2-170 (170)
3 COG0748 HugZ Putative heme iro 99.2 7.7E-12 1.7E-16 123.6 2.4 164 277-485 68-237 (245)
4 COG0748 HugZ Putative heme iro 92.2 0.15 3.2E-06 51.7 3.9 69 407-482 2-70 (245)
5 PRK03467 hypothetical protein; 90.6 0.64 1.4E-05 43.7 6.0 69 276-387 69-141 (144)
6 PF10446 DUF2457: Protein of u 82.0 1 2.2E-05 49.1 2.8 54 237-290 107-163 (458)
7 PF10446 DUF2457: Protein of u 65.0 3.3 7.1E-05 45.4 1.4 14 184-198 25-38 (458)
8 KOG1832 HIV-1 Vpr-binding prot 59.6 17 0.00036 43.6 5.8 109 88-197 1268-1389(1516)
9 KOG3130 Uncharacterized conser 53.7 7.6 0.00017 42.4 1.8 8 267-274 310-317 (514)
10 PF04931 DNA_pol_phi: DNA poly 52.6 9 0.00019 44.2 2.3 10 269-278 704-713 (784)
11 PTZ00415 transmission-blocking 50.5 9.4 0.0002 48.1 2.0 16 285-300 282-297 (2849)
12 KOG0943 Predicted ubiquitin-pr 41.8 15 0.00032 45.2 1.9 45 407-452 1881-1931(3015)
13 PF05071 NDUFA12: NADH ubiquin 41.4 16 0.00035 32.3 1.6 12 154-165 6-17 (105)
14 PF03115 Astro_capsid: Astrovi 39.1 10 0.00022 44.4 0.0 19 299-317 732-751 (787)
15 PF05285 SDA1: SDA1; InterPro 33.1 39 0.00085 35.3 3.2 15 232-246 112-126 (324)
16 PF04871 Uso1_p115_C: Uso1 / p 32.4 33 0.00071 31.8 2.2 9 206-214 110-118 (136)
17 PLN03095 NADH:ubiquinone oxido 29.8 30 0.00065 31.8 1.5 13 154-166 15-27 (115)
18 KOG3540 Beta amyloid precursor 25.0 45 0.00097 37.5 2.0 13 473-485 415-427 (615)
19 PF06970 RepA_N: Replication i 24.5 37 0.0008 28.6 1.0 21 153-174 42-62 (76)
20 cd06403 PB1_Par6 The PB1 domai 24.4 85 0.0018 27.4 3.2 37 148-185 38-77 (80)
21 PF10488 PP1c_bdg: Phosphatase 23.6 40 0.00086 35.7 1.2 61 215-279 31-92 (307)
22 PF03066 Nucleoplasmin: Nucleo 23.5 45 0.00097 31.4 1.5 10 53-62 4-13 (149)
23 PLN02732 Probable NADH dehydro 22.7 46 0.001 32.1 1.4 13 154-166 54-66 (159)
24 PF03066 Nucleoplasmin: Nucleo 22.6 29 0.00062 32.7 0.0 7 119-125 46-52 (149)
25 PRK08183 NADH dehydrogenase; V 21.5 53 0.0011 30.8 1.5 14 154-167 31-44 (133)
26 KOG2023 Nuclear transport rece 20.5 55 0.0012 38.4 1.6 11 247-257 361-371 (885)
27 PRK06630 hypothetical protein; 20.3 39 0.00084 30.4 0.4 13 154-166 18-30 (99)
28 KOG1832 HIV-1 Vpr-binding prot 20.3 80 0.0017 38.3 2.9 23 152-174 1307-1329(1516)
No 1
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.72 E-value=9.8e-18 Score=139.09 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=64.2
Q ss_pred Cchhhh-hhHHHHHHHhcCChhhHHHHHHHHHHhcCC-CCCceEEEeecCCCceEEEecCCcceEEEEecCCCCCCHHHH
Q 010741 398 PDVIAH-SAANIISRLKAGGEKTTQALKSLCWRTKGI-QVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSA 475 (502)
Q Consensus 398 PDpLAa-sEa~IIeHMNeDHadavdAL~~~a~~~~G~-~ve~ArmiGVDrlGfDLRV~sG~~~r~lR~pFp~patd~~dA 475 (502)
|||+++ .+++||+|||+||+ ++|.+||+++.|. .+.+|+|++||++||+|++ .+.+.+||+|++|+++.+++
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~---d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~~~~e~ 75 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHA---DDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVTDPEEA 75 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-H---HHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---SHCCH
T ss_pred cCcccHHHHHHHHHHHHHhHH---HHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCCCHHHH
Confidence 688985 89999999999999 5669999998887 4799999999999999999 24489999999999999999
Q ss_pred HHHHHHHc
Q 010741 476 ERQLNDLL 483 (502)
Q Consensus 476 RkaLveLL 483 (502)
|++|++|.
T Consensus 76 r~~lV~ma 83 (83)
T PF10615_consen 76 RDALVEMA 83 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999984
No 2
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.45 E-value=9.9e-14 Score=129.20 Aligned_cols=164 Identities=17% Similarity=0.123 Sum_probs=100.8
Q ss_pred CcCchhhccceEEEEcCeeEEEEeeeccCccccccccCCCCee----eccCCCEEEEecCchhHhhhhccCCCceEEEEe
Q 010741 111 ARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYV----TDEHGNIYIQVKNEEDILQSLISENNFVQVIIG 186 (502)
Q Consensus 111 ~~lt~ae~aRTivE~N~ka~l~~~~~v~~e~H~~i~w~e~~y~----~D~~Gdiyfqv~~d~~il~~~~~~~n~v~v~iG 186 (502)
..-..|+.||++|...+-|+|--- .......+.-+-.=.+|. .|.-|+.||=+.+-...-+++. +|+.+.++|.
T Consensus 2 ~~~~aA~~AR~Ll~~~~~g~LsTl-s~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~-~~~r~SL~i~ 79 (170)
T PF13883_consen 2 TREEAAELARTLLHQSRWGTLSTL-STQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLK-ADPRVSLTIS 79 (170)
T ss_dssp -TT-HHHHHHHHHHH-SEEEEEEE---SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHH-H--EEEEEEE
T ss_pred ChHHHHHHHHHHHhhCCEEEEEec-cCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHh-hCCCEEEEEe
Confidence 455789999999999999887432 122334455555555566 6999999999999888888875 5566777765
Q ss_pred cchhHHHHhhhhccccccccccccCCCCCCCCCCCCCCccCccccccccccceecccCccccccccCcccccccccccch
Q 010741 187 FDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHP 266 (502)
Q Consensus 187 ~d~~~~~~e~~~~~~s~~df~~~~~~~edsd~ed~~~~d~~~~~d~dy~~~~~~v~~d~~~~~~~l~dW~~~eT~~~~HP 266 (502)
..... +
T Consensus 80 ~~~~~------------------------------------------~-------------------------------- 85 (170)
T PF13883_consen 80 EPQGG------------------------------------------D-------------------------------- 85 (170)
T ss_dssp GGGSS------------------------------------------H--------------------------------
T ss_pred cCCCC------------------------------------------c--------------------------------
Confidence 43320 0
Q ss_pred hHHHHHHHHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCCC
Q 010741 267 MYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNE 345 (502)
Q Consensus 267 ~yFak~l~~~~~~~~~~~md~P~~~lsI~G~lrpa~~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~~ 345 (502)
|. +...+.|+.-.+||||+|.++|+..+|...+|++|+.+| .+..+
T Consensus 86 -----~~-----~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w----------------------- 132 (170)
T PF13883_consen 86 -----CD-----NSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHW----------------------- 132 (170)
T ss_dssp -----HH-----HHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-----------------------
T ss_pred -----cc-----ccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCcccc-----------------------
Confidence 00 002345556789999999999999888899999999999 44444
Q ss_pred CCCCCCCCcccccCCCCCCCeEEEEEEeeeEEEEcCCccceeeCHhhhhh
Q 010741 346 SEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRK 395 (502)
Q Consensus 346 ~d~s~~g~~~~~~~~~~~~DFsFYRLe~erIrLIGGFGra~wVd~eDy~a 395 (502)
.+ .+.-|||.||||++++|+||||||+++||+++||..
T Consensus 133 ~~------------~~~~hdf~~~rl~i~~v~~vgGFG~~~~i~~~~Y~~ 170 (170)
T PF13883_consen 133 LP------------FNSPHDFFFYRLEIERVYLVGGFGGAAWISAEEYYN 170 (170)
T ss_dssp -G------------G---G--EEEEEEEEEEEEE-SSSS-EEE-HHHHHH
T ss_pred cc------------ccccCccEEEEEEEEEEEEECccCCceEeCHHHhcC
Confidence 11 002499999999999999999999999999999963
No 3
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.18 E-value=7.7e-12 Score=123.64 Aligned_cols=164 Identities=10% Similarity=0.016 Sum_probs=124.3
Q ss_pred hcCCcccccCCCCCeeEEEEEeeecc--ccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCCCCCCCCCCC
Q 010741 277 ISDDPIDWMEQPPAGITIQGLLRPAL--IEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGS 353 (502)
Q Consensus 277 ~~~~~~~~md~P~~~lsI~G~lrpa~--~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~s~~g~ 353 (502)
+...+...=.+--.||+.++...... .--++.++++++.++ ++..| ++
T Consensus 68 l~~~~g~~d~~~~~Rl~~e~~afr~~~~sv~lat~~~~g~~~~syAp~~-----------------------~~------ 118 (245)
T COG0748 68 LLGEPGKGDELALPRLTLEIEAFRLEFDSVALATLRERGLPRASYAPLY-----------------------VD------ 118 (245)
T ss_pred eecCcCcCChhhccchhHHHHHHHhccchHHHhhhhhcCCcCCCcCceE-----------------------ec------
Confidence 34455555455566888888777766 445788888888888 66666 32
Q ss_pred cccccCCCCCCCeEEEEEEeeeEEEEcCCccceeeCHhhhhh-cCC-chhhhhhHHHHHHHhcCChhhHHHHHHHHHHhc
Q 010741 354 EESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRK-AQP-DVIAHSAANIISRLKAGGEKTTQALKSLCWRTK 431 (502)
Q Consensus 354 ~~~~~~~~~~~DFsFYRLe~erIrLIGGFGra~wVd~eDy~a-AeP-DpLAasEa~IIeHMNeDHadavdAL~~~a~~~~ 431 (502)
.+||.+|++++.+...++|+++ +.+.+.. .+. ...+..+.+++.|||++|. +|...|++.+.
T Consensus 119 ---------~~d~~iyis~~arh~~N~~~~p----~vs~m~iedea~a~s~~~r~rl~~hmnAd~~---eai~~yaqv~~ 182 (245)
T COG0748 119 ---------DGDYYIYISEIARHARNLGFNP----KVSVMFIEDEAKAKSAFARKRLREHMNADHA---EAIAEYAQVLA 182 (245)
T ss_pred ---------CCceEEEEehHHHHhhccCcCC----chhhheecCchhhhhHHHHHHHHHHhhhHHH---HHHHHHHHHHH
Confidence 5889999999999999999998 2222222 122 2245667799999999999 55588998876
Q ss_pred CCC-CCceEEEeecCCCceEEEecCCcceEEEEecCCCCCCHHHHHHHHHHHcCc
Q 010741 432 GIQ-VEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFP 485 (502)
Q Consensus 432 G~~-ve~ArmiGVDrlGfDLRV~sG~~~r~lR~pFp~patd~~dARkaLveLL~p 485 (502)
+.. ....+|.|||+.|+|+.+....+...+|+.|+++..+.++.+.+|++|...
T Consensus 183 ~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~~~~d~~~~lV~l~~~ 237 (245)
T COG0748 183 QLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYAISGDGRIALVGLAGG 237 (245)
T ss_pred HHhhhhcchhhcccccccceeeeccCCCceEEeccchhhccccchhHHHHHHhcC
Confidence 654 334449999999999988644455799999999999999999999999876
No 4
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=92.19 E-value=0.15 Score=51.66 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=55.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhcCCCCCceEEEeecCCCceEEEecCCcceEEEEecCCCCCCHHHHHHHHHHH
Q 010741 407 NIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDL 482 (502)
Q Consensus 407 ~IIeHMNeDHadavdAL~~~a~~~~G~~ve~ArmiGVDrlGfDLRV~sG~~~r~lR~pFp~patd~~dARkaLveL 482 (502)
.|++|||+.|-..+ ..+|....+....++-+.+||+.|+|+- |....++|.-|++.+ ++.+.|-.|--+
T Consensus 2 ~~ea~~na~~~l~~---~~~~~l~~~~~~~g~p~~sv~~~gid~~---g~p~~~~~~~~~h~~-~~~d~r~sil~~ 70 (245)
T COG0748 2 DIEAHMNARHLLRS---ARLAALAGLEPVTGVPFVSVVPVGIDID---GNPLILLSRLFPHTA-DEADPRCSILLG 70 (245)
T ss_pred cHHHHHHHHHHHHH---HHHHHHhcCCCCCCCceeeeccceeccC---CCcceeEeeeccccc-cccChhhhheec
Confidence 57899999999554 7777755555678999999999999993 445689999999999 999888877543
No 5
>PRK03467 hypothetical protein; Provisional
Probab=90.58 E-value=0.64 Score=43.72 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=51.6
Q ss_pred HhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccccCCCCCCccccccCCccccccccCCCCCCCCCCCCCcc
Q 010741 276 VISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEE 355 (502)
Q Consensus 276 ~~~~~~~~~md~P~~~lsI~G~lrpa~~eE~s~ir~~~~~~~~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~s~~g~~~ 355 (502)
.|..++-.|.. =.||-+.|.++++..+|+...|++|..+..-..-
T Consensus 69 TI~~~~~~v~~--I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~--------------------------------- 113 (144)
T PRK03467 69 TVNGQPKTVAL--IRGVQFKGEIRRLEGEESDAARKRYNRRFPVARA--------------------------------- 113 (144)
T ss_pred EEcCCCcchhh--ceEEEEEEEEEecChhHHHHHHHHHHHhCcchhc---------------------------------
Confidence 34445555544 2588899999999999888999999998732211
Q ss_pred cccCCCCCCCeEEEEEEeeeEEEEc---CCcc-cee
Q 010741 356 SKKDDKPMNGTSFYKLEMTKIQPIL---AHAH-QAA 387 (502)
Q Consensus 356 ~~~~~~~~~DFsFYRLe~erIrLIG---GFGr-a~w 387 (502)
....+|+|++..|+|++ |||+ ..|
T Consensus 114 --------~~~~iw~l~l~~iK~tdN~LGFgkKl~w 141 (144)
T PRK03467 114 --------LSAPVWELRLDEIKMTDNTLGFGKKLHW 141 (144)
T ss_pred --------cCCceEEEEEEEEEEeccccccccceEE
Confidence 12458999999999999 9994 566
No 6
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=81.99 E-value=1 Score=49.07 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=27.5
Q ss_pred cceecccCccccccccCcccccccccccch--hHHH-HHHHHHhcCCcccccCCCCC
Q 010741 237 NWVNVLEDEDDEDEMLGDWAKLETMRSSHP--MYFA-KKLSEVISDDPIDWMEQPPA 290 (502)
Q Consensus 237 ~~~~v~~d~~~~~~~l~dW~~~eT~~~~HP--~yFa-k~l~~~~~~~~~~~md~P~~ 290 (502)
.+|+..||++|++..+.=|+---|....++ +-.. ..+....|+..+.=+.+..+
T Consensus 107 ~GFAdSDDEdD~~sd~~~WtP~~~t~~~~~~~~~~~r~~~~~~~S~sS~~S~~~~~~ 163 (458)
T PF10446_consen 107 AGFADSDDEDDDGSDYEFWTPGATTAATSSSHLDVRRRSSHRRSSDSSIESLSSRRP 163 (458)
T ss_pred cccccccccccccccceeecccccccccccccccccccccccCCCCCccccccCCcc
Confidence 456666655555678888976654433332 1111 12233445555555555443
No 7
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=65.03 E-value=3.3 Score=45.39 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=7.2
Q ss_pred EEecchhHHHHhhhh
Q 010741 184 IIGFDTTEMIKEMEL 198 (502)
Q Consensus 184 ~iG~d~~~~~~e~~~ 198 (502)
-|=++-. |-+|+.+
T Consensus 25 KlTi~Dt-lkKE~~I 38 (458)
T PF10446_consen 25 KLTINDT-LKKENAI 38 (458)
T ss_pred cccHHHH-HHHHHHH
Confidence 3445555 5566554
No 8
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.61 E-value=17 Score=43.58 Aligned_cols=109 Identities=12% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCCCCCCCCc--hhccccccccCcCCc--CchhhccceEEEEcCeeEEEEeee--------ccCccccccccCCCC-eee
Q 010741 88 KNERTSYHPF--EDIADSTLKNGEEAR--LTAAETSRTIIEVNSTATLMFTDF--------TNGGAHENIIWPDLP-YVT 154 (502)
Q Consensus 88 ~~~~~~YHP~--Eei~~~~~~~~~~~~--lt~ae~aRTivE~N~ka~l~~~~~--------v~~e~H~~i~w~e~~-y~~ 154 (502)
-++-+++||- |=|-.++--+.+--+ =|-.+.-|+-|=-|+.|++|.-.. ||++=-++=+.+-|- |=+
T Consensus 1268 ~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a 1347 (1516)
T KOG1832|consen 1268 DYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDA 1347 (1516)
T ss_pred ecccccccCCCceEEeechhhhhHHHHHHhcCccccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccc
Confidence 3678899995 333333211112112 255677788999999999999887 566555556666664 445
Q ss_pred ccCCCEEEEecCchhHhhhhccCCCceEEEEecchhHHHHhhh
Q 010741 155 DEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEME 197 (502)
Q Consensus 155 D~~Gdiyfqv~~d~~il~~~~~~~n~v~v~iG~d~~~~~~e~~ 197 (502)
=+|-+|- .++=+-+||.=+++...---.+|-|-.++|.-.|+
T Consensus 1348 ~dYs~ia-Ti~v~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~s 1389 (1516)
T KOG1832|consen 1348 IDYSDIA-TIPVDRCLLDLCTEPTDSFLGVIEMEDQEDMDQFS 1389 (1516)
T ss_pred cccccce-eeecccchhhhhcCCccceEEEEeccChhhhhhhh
Confidence 6777774 44455677766665544434555555554554444
No 9
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.74 E-value=7.6 Score=42.41 Aligned_cols=8 Identities=25% Similarity=0.879 Sum_probs=5.8
Q ss_pred hHHHHHHH
Q 010741 267 MYFAKKLS 274 (502)
Q Consensus 267 ~yFak~l~ 274 (502)
|||+-.+.
T Consensus 310 i~f~~~~e 317 (514)
T KOG3130|consen 310 IYFSHTVE 317 (514)
T ss_pred cccccccC
Confidence 88886655
No 10
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=52.55 E-value=9 Score=44.19 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=5.5
Q ss_pred HHHHHHHHhc
Q 010741 269 FAKKLSEVIS 278 (502)
Q Consensus 269 Fak~l~~~~~ 278 (502)
|-.+|++|..
T Consensus 704 ~~~~l~~aL~ 713 (784)
T PF04931_consen 704 FRSALAKALG 713 (784)
T ss_pred HHHHHHHHhc
Confidence 5556666543
No 11
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=50.46 E-value=9.4 Score=48.12 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=9.5
Q ss_pred cCCCCCeeEEEEEeee
Q 010741 285 MEQPPAGITIQGLLRP 300 (502)
Q Consensus 285 md~P~~~lsI~G~lrp 300 (502)
+..|=+.|-|.|-+.-
T Consensus 282 i~~p~~~v~iicp~k~ 297 (2849)
T PTZ00415 282 INEPLIKVKIICPLKG 297 (2849)
T ss_pred cccccceeEEEccCCC
Confidence 4566666666665443
No 12
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=41.81 E-value=15 Score=45.23 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=29.6
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHHHhcCC-----CCCceEEEeecCCCceEEE
Q 010741 407 NIISRLKAG-GEKTTQALKSLCWRTKGI-----QVEEEAVIGVDSIGFDLRV 452 (502)
Q Consensus 407 ~IIeHMNeD-HadavdAL~~~a~~~~G~-----~ve~ArmiGVDrlGfDLRV 452 (502)
.|..-+|+. |+++ .||.+++.+.... .+..+++.-+|++-|--|.
T Consensus 1881 ~imAsiaaqsaaRa-ralealaarr~aaasrtP~aS~~~ierf~Pyrfssrs 1931 (3015)
T KOG0943|consen 1881 MIMASIAAQSAARA-RALEALAARRAAAASRTPAASSAGIERFDPYRFSSRS 1931 (3015)
T ss_pred hHHHHHhhHHHHHH-HHHHHHHhhccccccCCCcccCCCeeeeccccccchh
Confidence 566667776 5544 5777777653221 3456889999998887654
No 13
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=41.38 E-value=16 Score=32.33 Aligned_cols=12 Identities=50% Similarity=0.694 Sum_probs=11.3
Q ss_pred eccCCCEEEEec
Q 010741 154 TDEHGNIYIQVK 165 (502)
Q Consensus 154 ~D~~Gdiyfqv~ 165 (502)
+|.+||.|||.+
T Consensus 6 ~D~~GN~YyE~~ 17 (105)
T PF05071_consen 6 TDEFGNKYYENP 17 (105)
T ss_pred EeCCCCEEEeec
Confidence 699999999998
No 14
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=39.07 E-value=10 Score=44.41 Aligned_cols=19 Identities=5% Similarity=-0.018 Sum_probs=0.0
Q ss_pred eecc-ccchhhHHHHhhccc
Q 010741 299 RPAL-IEEHSDIQRHRSSNQ 317 (502)
Q Consensus 299 rpa~-~eE~s~ir~~~~~~~ 317 (502)
.+|| ..++...|..|+.-.
T Consensus 732 ~RAfPT~aek~~r~vy~d~L 751 (787)
T PF03115_consen 732 KRAFPTLAEKERRNVYMDAL 751 (787)
T ss_dssp --------------------
T ss_pred hccCCCchhhhhhhhHHhhh
Confidence 3455 366677777776654
No 15
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=33.06 E-value=39 Score=35.32 Aligned_cols=15 Identities=33% Similarity=0.805 Sum_probs=10.0
Q ss_pred ccccccceecccCcc
Q 010741 232 EDYDENWVNVLEDED 246 (502)
Q Consensus 232 ~dy~~~~~~v~~d~~ 246 (502)
+|.+++|+.|-+|++
T Consensus 112 ~Dd~~e~idv~~d~E 126 (324)
T PF05285_consen 112 SDDEGEWIDVESDEE 126 (324)
T ss_pred ccccCCcccccchhh
Confidence 333678998877643
No 16
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=32.40 E-value=33 Score=31.84 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=3.5
Q ss_pred cccccCCCC
Q 010741 206 FGIDEIDDE 214 (502)
Q Consensus 206 f~~~~~~~e 214 (502)
.|.+..+++
T Consensus 110 LG~eVSddE 118 (136)
T PF04871_consen 110 LGEEVSDDE 118 (136)
T ss_pred cCCCccCCc
Confidence 344433333
No 17
>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
Probab=29.81 E-value=30 Score=31.77 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=11.5
Q ss_pred eccCCCEEEEecC
Q 010741 154 TDEHGNIYIQVKN 166 (502)
Q Consensus 154 ~D~~Gdiyfqv~~ 166 (502)
+|++||.|||.++
T Consensus 15 ~D~~GNkYYE~~~ 27 (115)
T PLN03095 15 EDEFGNKYYENPS 27 (115)
T ss_pred EcCCCCeeeEcCC
Confidence 6999999999874
No 18
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=25.03 E-value=45 Score=37.52 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=8.5
Q ss_pred HHHHHHHHHHcCc
Q 010741 473 YSAERQLNDLLFP 485 (502)
Q Consensus 473 ~dARkaLveLL~p 485 (502)
++.|.++-+||.-
T Consensus 415 qeirdev~ell~~ 427 (615)
T KOG3540|consen 415 QEIRDEVDELLQV 427 (615)
T ss_pred HHHHHHHHHHHhh
Confidence 6677777776653
No 19
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=24.48 E-value=37 Score=28.64 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=15.8
Q ss_pred eeccCCCEEEEecCchhHhhhh
Q 010741 153 VTDEHGNIYIQVKNEEDILQSL 174 (502)
Q Consensus 153 ~~D~~Gdiyfqv~~d~~il~~~ 174 (502)
-+|++|+|||.-.+ +++++.+
T Consensus 42 wiDe~G~vYi~~s~-eel~~~L 62 (76)
T PF06970_consen 42 WIDENGNVYIIFSI-EELMELL 62 (76)
T ss_pred cCCCCCCEEEEeeH-HHHHHHH
Confidence 38999999997655 5566665
No 20
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=24.40 E-value=85 Score=27.36 Aligned_cols=37 Identities=30% Similarity=0.795 Sum_probs=29.9
Q ss_pred CCCCee---eccCCCEEEEecCchhHhhhhccCCCceEEEE
Q 010741 148 PDLPYV---TDEHGNIYIQVKNEEDILQSLISENNFVQVII 185 (502)
Q Consensus 148 ~e~~y~---~D~~Gdiyfqv~~d~~il~~~~~~~n~v~v~i 185 (502)
+.++|+ ||.|||+ .-|+||+|+...+.+++-.+.++|
T Consensus 38 ~~~~f~i~Y~D~~gDL-LPInNDdNf~kAlssa~plLRl~i 77 (80)
T cd06403 38 PNVDFLIGYTDPHGDL-LPINNDDNFLKALSSANPLLRIFI 77 (80)
T ss_pred CCCcEEEEEeCCCCCE-ecccCcHHHHHHHHcCCCceEEEE
Confidence 336665 6999997 689999999999998876667776
No 21
>PF10488 PP1c_bdg: Phosphatase-1 catalytic subunit binding region; InterPro: IPR019523 This entry represents the conserved C terminus of the regulatory subunit (15A and 15B) of protein phosphatase 1. This C-terminal domain appears to be a binding region for the catalytic subunit (PP1C) of protein phosphatase-1, which may in some circumstances also be retroviral in origin since it is found in both herpes simplex virus and in mouse and man. This domain is found in Gadd-34 apoptosis-associated proteins as well as the constitutive repressor of eIF2-alpha phosphorylation/protein phosphatase 1, regulatory (inhibitor) subunit 15b, otherwise known as CReP. Diverse stressful conditions are associated with phosphorylation of the alpha-subunit of eukaryotic translation initiation factor 2 (eIF2-alpha) on serine 51. This signaling event, which is conserved from yeast to mammals, negatively regulates the guanine nucleotide exchange factor, eIF2-B and inhibits the recycling of eIF2 to its active GTP bound form. In mammalian cells eIF2-alpha phosphorylation emerges as an important event in stress signaling that impacts on gene expression at both the translational and transcriptional levels [].
Probab=23.56 E-value=40 Score=35.67 Aligned_cols=61 Identities=25% Similarity=0.377 Sum_probs=39.7
Q ss_pred CCCCCCCCCCccCccccccccccceecccCccccccccCcccccc-cccccchhHHHHHHHHHhcC
Q 010741 215 DSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLE-TMRSSHPMYFAKKLSEVISD 279 (502)
Q Consensus 215 dsd~ed~~~~d~~~~~d~dy~~~~~~v~~d~~~~~~~l~dW~~~e-T~~~~HP~yFak~l~~~~~~ 279 (502)
+++.++.++|+||+.+|.|- -....|-+-+.|.+-=|.... .+-.-||+-|--+|..++.-
T Consensus 31 ~~~~~~~~~e~eddgfdSd~----s~s~s~~e~d~e~~~LW~s~~~s~dpynp~nfta~iqt~~~~ 92 (307)
T PF10488_consen 31 DSEGEDWDEEDEDDGFDSDG----SLSESDSEQDSEGLHLWNSFCESVDPYNPQNFTATIQTAATP 92 (307)
T ss_pred ccCccccccccccccccccc----ccccccccchhhhHHHHHHhhhccCCCCcccccccccccccC
Confidence 34444555555666666652 111111122567888999999 99999999999998877654
No 22
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=23.46 E-value=45 Score=31.44 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=6.0
Q ss_pred CCCCCceeee
Q 010741 53 NVPWNRFRRV 62 (502)
Q Consensus 53 ~~~~~~~~~~ 62 (502)
|.-|||=|+.
T Consensus 4 ~~~wGceL~~ 13 (149)
T PF03066_consen 4 EYFWGCELKA 13 (149)
T ss_dssp EEEEEEEEBS
T ss_pred eEEEEEEEcC
Confidence 4567776643
No 23
>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
Probab=22.65 E-value=46 Score=32.14 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=11.8
Q ss_pred eccCCCEEEEecC
Q 010741 154 TDEHGNIYIQVKN 166 (502)
Q Consensus 154 ~D~~Gdiyfqv~~ 166 (502)
+|++||.|||.++
T Consensus 54 ~D~~GNkYYE~~~ 66 (159)
T PLN02732 54 VDKFGNKYYQKLG 66 (159)
T ss_pred ecCCCCeeeecCC
Confidence 5999999999886
No 24
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=22.60 E-value=29 Score=32.73 Aligned_cols=7 Identities=29% Similarity=0.558 Sum_probs=4.6
Q ss_pred cceEEEE
Q 010741 119 SRTIIEV 125 (502)
Q Consensus 119 aRTivE~ 125 (502)
.+.||||
T Consensus 46 E~~vVe~ 52 (149)
T PF03066_consen 46 ELNVVEV 52 (149)
T ss_dssp SEEEEEE
T ss_pred ceeEEEE
Confidence 4667775
No 25
>PRK08183 NADH dehydrogenase; Validated
Probab=21.55 E-value=53 Score=30.85 Aligned_cols=14 Identities=43% Similarity=0.786 Sum_probs=12.3
Q ss_pred eccCCCEEEEecCc
Q 010741 154 TDEHGNIYIQVKNE 167 (502)
Q Consensus 154 ~D~~Gdiyfqv~~d 167 (502)
+|++||.|||.++.
T Consensus 31 ~D~~GNkYYE~~~~ 44 (133)
T PRK08183 31 EDEFGNVYYRTKGG 44 (133)
T ss_pred ecCCCCeeeecCCc
Confidence 59999999998864
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.47 E-value=55 Score=38.35 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=8.1
Q ss_pred ccccccCcccc
Q 010741 247 DEDEMLGDWAK 257 (502)
Q Consensus 247 ~~~~~l~dW~~ 257 (502)
|+|++..+|.-
T Consensus 361 DDdD~~~dWNL 371 (885)
T KOG2023|consen 361 DDDDAFSDWNL 371 (885)
T ss_pred ccccccccccH
Confidence 46678999963
No 27
>PRK06630 hypothetical protein; Provisional
Probab=20.33 E-value=39 Score=30.45 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=11.0
Q ss_pred eccCCCEEEEecC
Q 010741 154 TDEHGNIYIQVKN 166 (502)
Q Consensus 154 ~D~~Gdiyfqv~~ 166 (502)
+|++||.|||-.+
T Consensus 18 ~D~~GNkYYE~~~ 30 (99)
T PRK06630 18 EDEFLNQYYESRN 30 (99)
T ss_pred EeCCCChhcccCC
Confidence 6999999999554
No 28
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.30 E-value=80 Score=38.30 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=15.7
Q ss_pred eeeccCCCEEEEecCchhHhhhh
Q 010741 152 YVTDEHGNIYIQVKNEEDILQSL 174 (502)
Q Consensus 152 y~~D~~Gdiyfqv~~d~~il~~~ 174 (502)
-...--|||-+-+-+-++.+.++
T Consensus 1307 VtFNstG~VmYa~~~~~d~~sdv 1329 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAMLNIEDVMSDV 1329 (1516)
T ss_pred EEeccCccchhhhhhhhhhhhhh
Confidence 34556788877777777777665
Done!