Query 010742
Match_columns 502
No_of_seqs 283 out of 881
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:03:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1134 Uncharacterized conser 100.0 5E-92 1.1E-96 769.7 43.0 480 2-481 213-707 (728)
2 COG5594 Uncharacterized integr 100.0 1.6E-78 3.4E-83 643.4 35.1 442 3-444 233-723 (827)
3 PF02714 DUF221: Domain of unk 100.0 1.6E-67 3.5E-72 537.8 33.3 319 88-406 1-325 (325)
4 PF04547 Anoctamin: Calcium-ac 99.0 1.7E-07 3.7E-12 100.2 27.7 205 188-406 163-397 (452)
5 PF14703 DUF4463: Domain of un 98.4 3.3E-07 7.1E-12 74.7 4.4 57 13-69 1-85 (85)
6 KOG2513 Protein required for m 97.8 0.0071 1.5E-07 64.9 24.3 231 132-391 262-541 (647)
7 PF07810 TMC: TMC domain; Int 88.4 4.7 0.0001 34.5 9.3 53 319-376 47-104 (111)
8 KOG0107 Alternative splicing f 80.8 1.8 3.8E-05 39.8 3.5 42 76-117 38-81 (195)
9 PF13893 RRM_5: RNA recognitio 79.7 3 6.5E-05 30.4 3.9 23 85-107 21-43 (56)
10 PF00076 RRM_1: RNA recognitio 77.2 2.8 6.2E-05 31.4 3.3 27 81-107 35-61 (70)
11 smart00361 RRM_1 RNA recogniti 76.7 3.4 7.3E-05 31.8 3.6 27 82-108 34-60 (70)
12 KOG4206 Spliceosomal protein s 74.7 5.3 0.00011 38.1 4.9 47 81-127 48-96 (221)
13 KOG2514 Uncharacterized conser 73.5 27 0.00059 39.6 10.6 48 194-241 439-486 (861)
14 KOG0117 Heterogeneous nuclear 73.4 5.9 0.00013 41.4 5.2 45 80-124 203-251 (506)
15 KOG0117 Heterogeneous nuclear 73.4 10 0.00022 39.8 6.9 89 51-140 87-183 (506)
16 PF14259 RRM_6: RNA recognitio 72.3 4.2 9.1E-05 30.8 3.1 25 82-106 36-60 (70)
17 smart00360 RRM RNA recognition 67.4 6.7 0.00015 28.6 3.3 25 82-106 35-59 (71)
18 KOG0149 Predicted RNA-binding 66.8 2.1 4.6E-05 41.0 0.4 24 80-103 49-72 (247)
19 smart00362 RRM_2 RNA recogniti 65.5 8.2 0.00018 28.3 3.4 26 82-107 36-61 (72)
20 KOG3312 Predicted membrane pro 64.7 16 0.00035 32.5 5.4 31 10-40 26-56 (186)
21 PLN03134 glycine-rich RNA-bind 63.5 13 0.00028 33.3 4.8 37 82-118 73-111 (144)
22 TIGR01659 sex-lethal sex-letha 62.3 18 0.0004 37.3 6.3 59 83-141 147-213 (346)
23 cd00590 RRM RRM (RNA recogniti 58.9 13 0.00028 27.3 3.5 26 83-108 38-63 (74)
24 KOG0122 Translation initiation 57.6 13 0.00028 36.0 3.9 37 82-118 228-266 (270)
25 PF14362 DUF4407: Domain of un 50.7 1E+02 0.0022 30.9 9.5 58 348-406 46-106 (301)
26 PF14257 DUF4349: Domain of un 49.9 1.3E+02 0.0028 29.5 9.8 51 19-77 133-183 (262)
27 TIGR01661 ELAV_HUD_SF ELAV/HuD 49.5 35 0.00075 34.8 5.9 60 82-141 42-109 (352)
28 PF09874 DUF2101: Predicted me 48.5 98 0.0021 29.3 7.9 92 341-442 50-146 (206)
29 KOG0145 RNA-binding protein EL 46.3 1.3E+02 0.0027 29.7 8.5 41 81-121 165-209 (360)
30 PF04059 RRM_2: RNA recognitio 45.5 22 0.00048 29.6 3.0 47 81-130 41-87 (97)
31 KOG0144 RNA-binding protein CU 43.4 51 0.0011 34.7 5.7 28 81-108 161-188 (510)
32 COG1717 RPL32 Ribosomal protei 43.2 14 0.00031 32.1 1.5 26 3-29 74-99 (133)
33 TIGR01622 SF-CC1 splicing fact 41.4 37 0.0008 36.1 4.8 29 82-110 407-435 (457)
34 PF11823 DUF3343: Protein of u 40.6 40 0.00086 26.2 3.6 36 86-124 2-37 (73)
35 KOG2082 K+/Cl- cotransporter K 39.4 3E+02 0.0064 31.6 11.0 50 319-371 598-647 (1075)
36 PF06570 DUF1129: Protein of u 38.7 2.9E+02 0.0062 26.1 9.9 19 419-437 184-202 (206)
37 TIGR01661 ELAV_HUD_SF ELAV/HuD 38.6 29 0.00062 35.4 3.3 28 81-108 307-334 (352)
38 KOG1457 RNA binding protein (c 37.8 42 0.00091 32.2 3.8 22 85-106 77-98 (284)
39 KOG0148 Apoptosis-promoting RN 37.2 38 0.00083 33.4 3.6 27 80-106 99-125 (321)
40 TIGR01659 sex-lethal sex-letha 37.2 45 0.00097 34.5 4.4 27 82-108 232-258 (346)
41 PF10752 DUF2533: Protein of u 36.3 68 0.0015 25.7 4.2 44 18-71 19-63 (84)
42 PF02654 CobS: Cobalamin-5-pho 35.9 4.1E+02 0.0089 25.6 10.7 20 419-438 195-214 (235)
43 KOG0114 Predicted RNA-binding 35.9 52 0.0011 27.9 3.7 48 62-109 32-81 (124)
44 PF07544 Med9: RNA polymerase 33.5 1.2E+02 0.0026 24.3 5.5 51 20-77 23-73 (83)
45 KOG4208 Nucleolar RNA-binding 33.2 42 0.00091 31.8 3.1 26 82-107 89-114 (214)
46 PF11608 Limkain-b1: Limkain b 31.8 89 0.0019 25.5 4.3 40 85-124 39-80 (90)
47 PLN03120 nucleic acid binding 31.6 78 0.0017 31.3 4.8 35 84-119 42-78 (260)
48 TIGR01628 PABP-1234 polyadenyl 31.2 96 0.0021 34.1 6.1 61 82-142 39-109 (562)
49 PF05620 DUF788: Protein of un 30.1 4.3E+02 0.0093 24.1 10.6 54 368-422 64-126 (170)
50 KOG4211 Splicing factor hnRNP- 29.8 44 0.00096 35.6 2.9 24 81-104 141-164 (510)
51 KOG0144 RNA-binding protein CU 29.3 94 0.002 32.8 5.1 27 82-108 73-99 (510)
52 KOG0146 RNA-binding protein ET 28.3 52 0.0011 32.4 2.9 50 82-143 57-111 (371)
53 KOG0113 U1 small nuclear ribon 28.3 1.4E+02 0.003 30.0 5.9 25 80-104 138-162 (335)
54 KOG1548 Transcription elongati 28.2 94 0.002 31.8 4.7 43 65-107 286-336 (382)
55 COG4858 Uncharacterized membra 26.1 5.6E+02 0.012 24.1 9.3 22 348-369 195-218 (226)
56 TIGR01648 hnRNP-R-Q heterogene 25.3 1.5E+02 0.0033 32.9 6.2 26 82-107 179-204 (578)
57 TIGR01648 hnRNP-R-Q heterogene 24.1 1.4E+02 0.0031 33.1 5.7 59 81-139 95-156 (578)
58 KOG0131 Splicing factor 3b, su 23.7 1.2E+02 0.0026 28.3 4.2 27 80-106 46-72 (203)
59 PF04835 Pox_A9: A9 protein co 23.2 1.6E+02 0.0035 21.6 3.9 43 364-408 4-46 (54)
60 PRK09702 PTS system arbutin-sp 23.1 83 0.0018 28.8 3.1 23 349-371 11-33 (161)
61 TIGR01642 U2AF_lg U2 snRNP aux 23.0 69 0.0015 34.6 3.0 26 84-109 463-488 (509)
62 KOG0125 Ataxin 2-binding prote 22.2 87 0.0019 31.8 3.2 28 81-108 132-159 (376)
63 TIGR01010 BexC_CtrB_KpsE polys 21.5 5.2E+02 0.011 26.5 9.2 23 57-79 243-265 (362)
64 KOG3478 Prefoldin subunit 6, K 21.2 1.9E+02 0.004 24.7 4.5 22 57-78 77-98 (120)
65 TIGR00834 ae anion exchange pr 20.9 5.5E+02 0.012 30.2 9.7 70 363-435 795-866 (900)
66 PF15159 PIG-Y: Phosphatidylin 20.9 84 0.0018 24.7 2.3 26 342-367 43-68 (72)
67 TIGR01628 PABP-1234 polyadenyl 20.5 2E+02 0.0044 31.5 6.1 61 83-143 127-200 (562)
No 1
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=5e-92 Score=769.71 Aligned_cols=480 Identities=39% Similarity=0.642 Sum_probs=445.0
Q ss_pred CcCCCCeEEEEEEeecchHHHHHHHHHHHHHHHHhhhh---cc--cCCC--CCcCc-ccc-ccchhhhHHHHHHHHHHhH
Q 010742 2 NYYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFST---EE--KSKL--SLLPC-LCG-KPNSFEVLSDESDSVRENI 72 (502)
Q Consensus 2 ~~~~~~~~~v~~~y~~~~l~~L~~~~~~~~~~l~~~~~---~~--~~~p--~~~~~-~~g-~vd~i~~~~~~i~~l~~~i 72 (502)
.+||.++.+++++||.+++.++.++++++.+++.+.+. .. +.|| ++++| ++| +||++|||++|++++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~l~~~~~k~~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i 292 (728)
T KOG1134|consen 213 LNHPVKVRSHQVVYNESKLSKLLSKLKKLRENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDI 292 (728)
T ss_pred ccCCceeehhHHHhhHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999544332221 11 2555 56777 778 9999999999999999999
Q ss_pred hhhhhhhhhccccceEEEEeCCHHHHHHHHHHhccCCCCceeeecCCCCCCeecCcccCchhhHHHHHHHHHHHHHHHHH
Q 010742 73 GFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMI 152 (502)
Q Consensus 73 ~~~~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~APeP~DIiW~NL~~~~~~~~~R~~~~~~~~~~l~~ 152 (502)
+++|+...++++.|+|||||+|+.+|+.|+|.+++.+|.+|.++.||||+||.|+|+.++..+|+.|+++++++++++++
T Consensus 293 ~~~~~~~~~~~~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~ 372 (728)
T KOG1134|consen 293 EELRESLYEEKPLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLF 372 (728)
T ss_pred HHHHHHHHhcCCCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHH
Confidence 98887776668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHhhhcccchhHHHHHHhhh
Q 010742 153 VFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIK 232 (502)
Q Consensus 153 f~~iPva~v~~l~~l~~l~~~~p~l~~~~~~~~~~~~i~~~LPslll~~~~~llP~ii~~ls~~eg~~s~S~~~~~~~~k 232 (502)
||++|+++|++++|++.|++.+||++.+.+.++++++++|+||++++.++++++|+++++++++||++|+|+.|++++.|
T Consensus 373 f~~iPva~V~~l~nl~~l~~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k 452 (728)
T KOG1134|consen 373 FWIIPVAFVQALTNLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNK 452 (728)
T ss_pred HHHHHHHHHHHHHhhhhhhhccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHh
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHhhhhHHHHHHH-hhchHHHHHHHHHhcCcchhHHHHHHHHHHHHHhHHHHhchhhHHHHHHHhhhc
Q 010742 233 VLSFTIWNVFFVNVLSGSIMGQLNA-ISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVC 311 (502)
Q Consensus 233 ~f~F~~~nvflv~~l~~s~~~~l~~-~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~ 311 (502)
+|+|+++|+|++.+++|+.+.++.. +++|.++++.+|.++|++++||++|++++||+|.++||+|+.+|+++.+++.+.
T Consensus 453 ~~~F~~~nvFl~~~l~~sa~~~~~~~l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~ 532 (728)
T KOG1134|consen 453 YYIFLLVNVFLVVTLSGSALRQLLSILSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFL 532 (728)
T ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHHhcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHc
Confidence 9999999999999999999988864 456999999999999999999999999999999999999999999999888765
Q ss_pred -cCCCCC--CCCC-CCCCchhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhheeeccccCCCCccHHHH
Q 010742 312 -RIKEDQ--PNGF-LSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIA 387 (502)
Q Consensus 312 -r~~~~~--~~~~-~~f~~~~~y~~~l~~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~esgG~~w~~~ 387 (502)
++++++ ++++ +.+++|..||+.+++++|+++||+++|+|+|||++||+++|+|||||++|||.++|||||++||.+
T Consensus 533 ~~t~~~~~e~~~p~~~~~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~i 612 (728)
T KOG1134|consen 533 KSTPRDREERYEPLSSFYFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDI 612 (728)
T ss_pred ccchhhhhhhcCCccccchhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHH
Confidence 344443 2344 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHhcccCccccccchhHhhhhccccccCCc-hHHHHH
Q 010742 388 HNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCRQRFFPTFTKMSAQVLTEMDRQDEQGGR-MEEIYQ 466 (502)
Q Consensus 388 ~~~~~~~l~l~qi~~~g~~~lk~~~~~~~~~ipl~i~t~~f~~~~~~~f~p~~~~~p~~~~~~~d~~d~~~~~-~~~~~~ 466 (502)
|+++++|++++|++|+|+|++|+++..+.+++|++++|++||.+|+.||.|.+..+|++++..+|+.|+..++ ++...+
T Consensus 613 h~~ii~~l~l~ql~l~gl~~~k~~~~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~ 692 (728)
T KOG1134|consen 613 HRRIIFGLILFQLILFGLFSLKKGAVASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYN 692 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986655 567788
Q ss_pred HHHhhcCCCcccccc
Q 010742 467 QLRSAYCQFRLISQD 481 (502)
Q Consensus 467 ~l~~~y~~p~l~~~~ 481 (502)
.+.++|.||++++.+
T Consensus 693 ~~~~~~~~p~~~~~~ 707 (728)
T KOG1134|consen 693 YLKSAYVLPVFLSGS 707 (728)
T ss_pred cccccccCccccccc
Confidence 899999999999876
No 2
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=1.6e-78 Score=643.42 Aligned_cols=442 Identities=26% Similarity=0.405 Sum_probs=401.9
Q ss_pred cCCCCeEEEEEEeecchHHHHHHHHHHHHHHHHhhh--------hc-----c-----------------------cCCCC
Q 010742 3 YYSSSYLSHQIVYRASTVRKLMNDAENMCQLVKNFS--------TE-----E-----------------------KSKLS 46 (502)
Q Consensus 3 ~~~~~~~~v~~~y~~~~l~~L~~~~~~~~~~l~~~~--------~~-----~-----------------------~~~p~ 46 (502)
.+-.++.+..+|||.+.++++.++|++..+++|... ++ . ++||.
T Consensus 233 l~~~~i~~~~l~~~~~~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~ 312 (827)
T COG5594 233 LKVGEIDSDVLCRDLGTLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPK 312 (827)
T ss_pred cCeeeeccchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccch
Confidence 345677788899999999999999999888876331 01 0 13442
Q ss_pred ---CcC--cccc-ccchhhhHHHHHHHHHHhHhhhhhhhhhccccceEEEEeCCHHHHHHHHHHhccCCCCcee-eecCC
Q 010742 47 ---LLP--CLCG-KPNSFEVLSDESDSVRENIGFDISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWV-TELAP 119 (502)
Q Consensus 47 ---~~~--~~~g-~vd~i~~~~~~i~~l~~~i~~~~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~-v~~AP 119 (502)
+.. +.+| |||+|||++++++++.++++..|+......+.+.|||||+|+..||+|+|.+..+++.... ++.||
T Consensus 313 ~~i~k~~~~i~gKkVdaI~y~s~~l~~l~~~i~~~r~~~~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iap 392 (827)
T COG5594 313 HRIKKLNKGIFGKKVDAIDYYSAKLTKLDAEIENARKSLYENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAP 392 (827)
T ss_pred hhhhhhhhhhccceecHHHHHHHHHHHHHHHHHHHHhCccccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecC
Confidence 222 4567 9999999999999999999998876666667889999999999999999999888887766 99999
Q ss_pred CCCCeecCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhhh-hHHHHHHHHhhhHHHH
Q 010742 120 EPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFK-QKYIKQLVTGYLPSVI 198 (502)
Q Consensus 120 eP~DIiW~NL~~~~~~~~~R~~~~~~~~~~l~~f~~iPva~v~~l~~l~~l~~~~p~l~~~~~-~~~~~~~i~~~LPsll 198 (502)
+|+||+|+|+..++++|..|++.++++.++++++|++|||+|+.++|++.+++.+||++.+.+ ++++.++++|+||+++
T Consensus 393 aPnDi~W~Nl~ls~~~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~ 472 (827)
T COG5594 393 APNDIIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVA 472 (827)
T ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876 5799999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhhcccchhHHHHHHhhhhhhhhhhhHHHHHHhhhhHHHHH-HHhhchHHHHHHHHHhcCcchh
Q 010742 199 LILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQL-NAISSVKIILNQLAAAVPIQAS 277 (502)
Q Consensus 199 l~~~~~llP~ii~~ls~~eg~~s~S~~~~~~~~k~f~F~~~nvflv~~l~~s~~~~l-~~~~~p~~i~~~l~~~lp~~s~ 277 (502)
+.+++.++|+++++++.+||..|+|+.|+.++.|+|.|+++|.|+|.+++|+..+.+ ...++|.+++..+|+++|++|+
T Consensus 473 ~~~l~~ivP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~Sn 552 (827)
T COG5594 473 LSLLMSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASN 552 (827)
T ss_pred HHHHHHHhHHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHH
Confidence 999999999999999999999999999999999999999999999999988765544 4578999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhchhhHHHHHHH-hhhccCCCCC---CCCCCCCCchhhhhHHHHHHHHHHHhhhhhHHHHHH
Q 010742 278 FFMTYVLTSGWASLAVEMVQPLGLVYNTMK-KCVCRIKEDQ---PNGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPL 353 (502)
Q Consensus 278 FFi~yii~~~~~~~~~~Ll~~~~li~~~~~-~~~~r~~~~~---~~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plilpf 353 (502)
||++|++++|+.+++.+|+|+.+|+.+++. ++..+|+|++ .+.++.|+||..||..+.+++|+++||+++|+|+.|
T Consensus 553 Ffi~~iilqgl~~~~~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf 632 (827)
T COG5594 553 FFISYIILQGLSGFPGTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLF 632 (827)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999886554 5667787764 367899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhheeeccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHh
Q 010742 354 LLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLIFGTLLFNEYCR 433 (502)
Q Consensus 354 ~~~yF~l~y~v~Ky~llyvy~~~~esgG~~w~~~~~~~~~~l~l~qi~~~g~~~lk~~~~~~~~~ipl~i~t~~f~~~~~ 433 (502)
|++||++.|++|||+++|++..++||||++||.+++|+++|+++||+||+|+|++.++|+.+.+++|++.+|++||.+|+
T Consensus 633 ~~v~F~~~ylaykY~l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~ 712 (827)
T COG5594 633 GAVYFILNYLAYKYNLIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFK 712 (827)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccc
Q 010742 434 QRFFPTFTKMS 444 (502)
Q Consensus 434 ~~f~p~~~~~p 444 (502)
..|.|+.+++-
T Consensus 713 ~~f~pl~~~ik 723 (827)
T COG5594 713 KMFDPLSKYIK 723 (827)
T ss_pred Hhhccccccee
Confidence 99998876554
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=1.6e-67 Score=537.84 Aligned_cols=319 Identities=33% Similarity=0.636 Sum_probs=302.9
Q ss_pred EEEEeCCHHHHHHHHHHhccCCCCceeeecCCCCCCeecCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010742 88 AFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRL 167 (502)
Q Consensus 88 AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~APeP~DIiW~NL~~~~~~~~~R~~~~~~~~~~l~~f~~iPva~v~~l~~l 167 (502)
|||||+++.+|+.++|...+++|.+|.++.||||+||+|+||+.+..+|+.|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcchhhhhhh-hHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHhhhcccchhHHHHHHhhhhhhhhhhhHHHHHH
Q 010742 168 HQLSHAFPFLKGMFK-QKYIKQLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNV 246 (502)
Q Consensus 168 ~~l~~~~p~l~~~~~-~~~~~~~i~~~LPslll~~~~~llP~ii~~ls~~eg~~s~S~~~~~~~~k~f~F~~~nvflv~~ 246 (502)
+++++..|++++..+ ++...++++|++|++++.++|.++|.++++++++|||.|+|+.|+++++|+|+|+++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998855 4677799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHH-HhhchHHHHHHHHHhcCcchhHHHHHHHHHHHHHhHHHHhchhhHHHHHHHhhhc-cCCCCCC---CCC
Q 010742 247 LSGSIMGQLN-AISSVKIILNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKCVC-RIKEDQP---NGF 321 (502)
Q Consensus 247 l~~s~~~~l~-~~~~p~~i~~~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~-r~~~~~~---~~~ 321 (502)
++++.++.++ .+++|+++.+.+|.++|++|+||++|++++++++.+++|+|+++++++.++++.. +++||.. .++
T Consensus 161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~ 240 (325)
T PF02714_consen 161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP 240 (325)
T ss_pred hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 9999988875 4578999999999999999999999999999999999999999999888887755 6666542 389
Q ss_pred CCCCchhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhheeeccccCCCCccHHHHHHHHHHHHHHHHHH
Q 010742 322 LSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQII 401 (502)
Q Consensus 322 ~~f~~~~~y~~~l~~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~esgG~~w~~~~~~~~~~l~l~qi~ 401 (502)
++|+||..||..+++++++++||+++|+++|+|++||++.|++||||++|||++++||||++||.+++++++|++++|++
T Consensus 241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~ 320 (325)
T PF02714_consen 241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT 320 (325)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 010742 402 ALGVF 406 (502)
Q Consensus 402 ~~g~~ 406 (502)
|+|+|
T Consensus 321 ~~g~f 325 (325)
T PF02714_consen 321 MIGLF 325 (325)
T ss_pred HHHhC
Confidence 99975
No 4
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.02 E-value=1.7e-07 Score=100.17 Aligned_cols=205 Identities=12% Similarity=0.137 Sum_probs=134.7
Q ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHHhhhcccchhHHHHHHhhhhhhhhhhhHHHHHHhhhhHHHHHH--Hhh-chHHH
Q 010742 188 QLVTGYLPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLN--AIS-SVKII 264 (502)
Q Consensus 188 ~~i~~~LPslll~~~~~llP~ii~~ls~~eg~~s~S~~~~~~~~k~f~F~~~nvflv~~l~~s~~~~l~--~~~-~p~~i 264 (502)
+++.+.+-++++.+++.+.-.+...+.++|.|.|.|+.|.+...|.|.|+++|.+...... +.+.... ... +..++
T Consensus 163 ~~~~~vl~~v~i~il~~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~~~~~~~L 241 (452)
T PF04547_consen 163 SLIPTVLNAVVILILNFIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEECQPCLSRL 241 (452)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccCCCHHHH
Confidence 3444444445555566666677788889999999999999999999999999987644332 1211110 000 11222
Q ss_pred HHHHHHhcCcchhHHHHHHHHHHHHHhHHHHhchhhHHHHHHHhh-hc----cCC----CC----C--------CCCCCC
Q 010742 265 LNQLAAAVPIQASFFMTYVLTSGWASLAVEMVQPLGLVYNTMKKC-VC----RIK----ED----Q--------PNGFLS 323 (502)
Q Consensus 265 ~~~l~~~lp~~s~FFi~yii~~~~~~~~~~Ll~~~~li~~~~~~~-~~----r~~----~~----~--------~~~~~~ 323 (502)
+.-+.++++++-+.+...|.+ .|.+.+..++. .. ++. ++ . ....++
T Consensus 242 -----------~~ql~~~~~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~ 308 (452)
T PF04547_consen 242 -----------RIQLFTIMVTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPP 308 (452)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCC
Confidence 333445555666666666655 44444444333 11 111 00 0 023445
Q ss_pred CCch---hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhheeecccc---CCCCccHHHHHHHHHHHHHH
Q 010742 324 FPYH---TEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDY---ESGGKFWPIAHNSTIVSLVL 397 (502)
Q Consensus 324 f~~~---~~y~~~l~~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~---esgG~~w~~~~~~~~~~l~l 397 (502)
++-. .+|..+..-+-.+..||++.|+...++++.-.+-.-+|++.+++.++++. .++=..|-.++.-+...-++
T Consensus 309 y~~~g~~~dY~emviQFGyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~ 388 (452)
T PF04547_consen 309 YDPDGLFDDYLEMVIQFGYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVI 388 (452)
T ss_pred CCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHH
Confidence 5432 78888888888899999999999999999999999999999999998653 33334798888887777777
Q ss_pred HHHHHHHHH
Q 010742 398 TQIIALGVF 406 (502)
Q Consensus 398 ~qi~~~g~~ 406 (502)
....++++.
T Consensus 389 tN~~li~~~ 397 (452)
T PF04547_consen 389 TNAALIAFT 397 (452)
T ss_pred HHHHHHHhh
Confidence 777766644
No 5
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=98.39 E-value=3.3e-07 Score=74.69 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=44.2
Q ss_pred EEeecchHHHHHHHHHHHHHHHHhhhhcc--------cCCCC--C---------------cCc-ccc--ccchhhhHHHH
Q 010742 13 IVYRASTVRKLMNDAENMCQLVKNFSTEE--------KSKLS--L---------------LPC-LCG--KPNSFEVLSDE 64 (502)
Q Consensus 13 ~~y~~~~l~~L~~~~~~~~~~l~~~~~~~--------~~~p~--~---------------~~~-~~g--~vd~i~~~~~~ 64 (502)
+|||.++|.+|+++|+++.++||++..++ +.+|+ . +++ +|| +||+||||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 58999999999999999999999876321 23332 1 344 444 99999999999
Q ss_pred HHHHH
Q 010742 65 SDSVR 69 (502)
Q Consensus 65 i~~l~ 69 (502)
+++++
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 98874
No 6
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.0071 Score=64.87 Aligned_cols=231 Identities=14% Similarity=0.173 Sum_probs=122.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Q 010742 132 PYRQLWFRKIAILLAAIAFMIVFLAPVAFVQGLTRLHQLSHAFPFLKGMFKQKYIKQLVTGYLPSVILILFQYAVPPTMM 211 (502)
Q Consensus 132 ~~~~~~~R~~~~~~~~~~l~~f~~iPva~v~~l~~l~~l~~~~p~l~~~~~~~~~~~~i~~~LPslll~~~~~llP~ii~ 211 (502)
|.+++..|+..+.+-++++++....++.+...-... +..+....+ +.+ +-.++|++++.++..++.-+.+
T Consensus 262 p~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie~--------~~~s~~~~~-~~s-ils~lP~iv~~~li~~~t~~Y~ 331 (647)
T KOG2513|consen 262 PEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIEV--------WVLSDYGGP-LIS-ILSYLPTIVYAVLIPVLTRIYK 331 (647)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHcCCc-hHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777766655555444444444433322111 111111111 222 2367888888777665554444
Q ss_pred ----HHHhhhcccchhHHHHHHhhhhhhhhhhhHHHHHHhhhhHHHHHHHhhchHHHHHHHHHhcCcchhHHHHHHHHHH
Q 010742 212 ----LFSTVEGSVSHSGRKRSACIKVLSFTIWNVFFVNVLSGSIMGQLNAISSVKIILNQLAAAVPIQASFFMTYVLTSG 287 (502)
Q Consensus 212 ----~ls~~eg~~s~S~~~~~~~~k~f~F~~~nvflv~~l~~s~~~~l~~~~~p~~i~~~l~~~lp~~s~FFi~yii~~~ 287 (502)
++.++|.|.++|..+++...|.+.|+++|.++.....+-+. .|-......++..+-..-.
T Consensus 332 k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l------~d~~~Lk~~l~~~li~sQ~---------- 395 (647)
T KOG2513|consen 332 KLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLL------RDMELLKQQLATLLITSQS---------- 395 (647)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHH----------
Confidence 45578999999999999999999999999886543332222 1111121222221111000
Q ss_pred HHHhHHHHhch------h--h-HHHHHHHhhhc----c-------------CCCCC------C------CCCCCCCch--
Q 010742 288 WASLAVEMVQP------L--G-LVYNTMKKCVC----R-------------IKEDQ------P------NGFLSFPYH-- 327 (502)
Q Consensus 288 ~~~~~~~Ll~~------~--~-li~~~~~~~~~----r-------------~~~~~------~------~~~~~f~~~-- 327 (502)
....++...+ . . .+ +..++..+ . ++.++ + .+..--.|.
T Consensus 396 -l~~~~e~~~p~f~~~~~r~~~~~-~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~~qa~~E~~~~~ydgt 473 (647)
T KOG2513|consen 396 -LLNLMEIALPYFKIRTKRYENYI-RFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSLKQAELESGLAEYDGT 473 (647)
T ss_pred -HHHHHhhcchHHHHhhhhhhhhh-hHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccchhhhhcchhhhhcch
Confidence 0111111110 0 0 00 00000000 0 00000 0 011111222
Q ss_pred -hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhheeecccc----CCCCccHHHHHHHH
Q 010742 328 -TEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDY----ESGGKFWPIAHNST 391 (502)
Q Consensus 328 -~~y~~~l~~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~----esgG~~w~~~~~~~ 391 (502)
..|-.+++-|-....||++.||-..++++--.+.+=+|-+.+..+..+++ ++-| .|..++..+
T Consensus 474 f~Dylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG-~Wq~~l~~l 541 (647)
T KOG2513|consen 474 FDDYLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIG-AWQNALELL 541 (647)
T ss_pred hHHHHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhH-HHHHHHHHH
Confidence 23445566666788899999999999999999999999999999988764 5555 566666554
No 7
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=88.38 E-value=4.7 Score=34.46 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=40.0
Q ss_pred CCCCCCCchhh-----hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhheeeccc
Q 010742 319 NGFLSFPYHTE-----VSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTD 376 (502)
Q Consensus 319 ~~~~~f~~~~~-----y~~~l~~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~ 376 (502)
...++|+.+.. |++ .+.++|+.|||..|++ +.+-+++.+++.|+.+++.++|+
T Consensus 47 ~g~~eF~i~~nvL~liY~Q--tl~WiG~ffsPlLP~i---~~ik~~i~FYvKk~sll~~c~p~ 104 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQ--TLVWIGMFFSPLLPAI---NVIKLFILFYVKKFSLLYNCQPP 104 (111)
T ss_pred CCCCCccHhhhHHHHHHcc--hhhhhhHHhchhHHHH---HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556666544 444 3458999999888875 67778888899999999999875
No 8
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=80.83 E-value=1.8 Score=39.76 Aligned_cols=42 Identities=24% Similarity=0.131 Sum_probs=33.0
Q ss_pred hhhhhhccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeec
Q 010742 76 ISDLASEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTEL 117 (502)
Q Consensus 76 ~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~ 117 (502)
+..+....+-|.|||+|++..+|..|...|..++ ..+|.|++
T Consensus 38 rsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 38 RSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred eeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 3444455788999999999999999999887766 35677775
No 9
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=79.68 E-value=3 Score=30.36 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=20.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcc
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.+.|||+|.+..+|..|.+.++.
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~ 43 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNG 43 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHhCC
Confidence 59999999999999999987764
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=77.21 E-value=2.8 Score=31.36 Aligned_cols=27 Identities=37% Similarity=0.320 Sum_probs=23.2
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
..+..+.|||+|++..+|..|.+.++.
T Consensus 35 ~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 35 SGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp TSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccceEEEEEcCHHHHHHHHHHcCC
Confidence 456789999999999999999987664
No 11
>smart00361 RRM_1 RNA recognition motif.
Probab=76.73 E-value=3.4 Score=31.84 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.++.|.|||+|++..+|..|.+.++..
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 445789999999999999999877653
No 12
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=74.74 E-value=5.3 Score=38.13 Aligned_cols=47 Identities=26% Similarity=0.187 Sum_probs=34.2
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCCeecC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPNDVLWS 127 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~DIiW~ 127 (502)
..+-.|.|||+|++..+|..|...++.-. ..-++++.|=+++||+=+
T Consensus 48 t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 48 TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 44569999999999888777766554321 124668889899998765
No 13
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.48 E-value=27 Score=39.64 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhhhcccchhHHHHHHhhhhhhhhhhhH
Q 010742 194 LPSVILILFQYAVPPTMMLFSTVEGSVSHSGRKRSACIKVLSFTIWNV 241 (502)
Q Consensus 194 LPslll~~~~~llP~ii~~ls~~eg~~s~S~~~~~~~~k~f~F~~~nv 241 (502)
+-.+++.++|.+--.+-.++...|.+.|.|+.|-++.-|.|.|+++|.
T Consensus 439 in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~ 486 (861)
T KOG2514|consen 439 INLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNY 486 (861)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHh
Confidence 334444555555555566788899999999999999999999999985
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=73.44 E-value=5.9 Score=41.45 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=34.4
Q ss_pred hhccccceEEEEeCCHHHHHHHHHHhccCCCCce----eeecCCCCCCe
Q 010742 80 ASEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLW----VTELAPEPNDV 124 (502)
Q Consensus 80 ~~~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~----~v~~APeP~DI 124 (502)
++.|+.|-|||.+.|-.+|.++.|.+...+-.-| .|++|=.-.|+
T Consensus 203 dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 203 DKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred ccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 4677899999999999999999998887766555 46666433333
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=73.41 E-value=10 Score=39.81 Aligned_cols=89 Identities=24% Similarity=0.159 Sum_probs=55.3
Q ss_pred cccccchhhhHHHHHHHHHHhHh---hhh--hhhhhccccceEEEEeCCHHHHHHHHHHhccCC--CC-ceeeecCCCCC
Q 010742 51 LCGKPNSFEVLSDESDSVRENIG---FDI--SDLASEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PM-LWVTELAPEPN 122 (502)
Q Consensus 51 ~~g~vd~i~~~~~~i~~l~~~i~---~~~--~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~-~~~v~~APeP~ 122 (502)
+.|+... |-++.++.-+-+++- +.| .+...-.+.|+|||||.+...|+.|...+.+.. |. ...+...-.-.
T Consensus 87 fvGkIPr-D~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~ 165 (506)
T KOG0117|consen 87 FVGKIPR-DVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANC 165 (506)
T ss_pred EecCCCc-cccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecc
Confidence 6664432 567788887766642 222 122455678999999999999999999887652 22 22333333345
Q ss_pred CeecCcccCchhhHHHHH
Q 010742 123 DVLWSNLCIPYRQLWFRK 140 (502)
Q Consensus 123 DIiW~NL~~~~~~~~~R~ 140 (502)
-..=.|+..++.+--++.
T Consensus 166 RLFiG~IPK~k~keeIle 183 (506)
T KOG0117|consen 166 RLFIGNIPKTKKKEEILE 183 (506)
T ss_pred eeEeccCCccccHHHHHH
Confidence 566667766665544433
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=72.32 E-value=4.2 Score=30.81 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.++.+.|||+|.+..+|..|.+..+
T Consensus 36 ~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 36 GQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccCCEEEEEeCCHHHHHHHHHHCC
Confidence 3568999999999999999998765
No 17
>smart00360 RRM RNA recognition motif.
Probab=67.38 E-value=6.7 Score=28.56 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=21.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.++.|.|||+|++..+|..|.+.++
T Consensus 35 ~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 35 GKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHcC
Confidence 4557899999999999999887665
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=66.81 E-value=2.1 Score=41.01 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.9
Q ss_pred hhccccceEEEEeCCHHHHHHHHH
Q 010742 80 ASEKEYAVAFVYFKTRYAAIVAAE 103 (502)
Q Consensus 80 ~~~~~~~~AFVtF~s~~~A~~~~q 103 (502)
...+..|.+||||++..+|..||+
T Consensus 49 ~t~rskGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 49 NTGRSKGYGFVTFRDAEAATRACK 72 (247)
T ss_pred CCccccceeeEEeecHHHHHHHhc
Confidence 355678999999999999999987
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=65.52 E-value=8.2 Score=28.25 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=21.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.++.|.|||+|++..+|..|.+.++.
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 34679999999999999998876653
No 20
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=64.70 E-value=16 Score=32.51 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=26.2
Q ss_pred EEEEEeecchHHHHHHHHHHHHHHHHhhhhc
Q 010742 10 SHQIVYRASTVRKLMNDAENMCQLVKNFSTE 40 (502)
Q Consensus 10 ~v~~~y~~~~l~~L~~~~~~~~~~l~~~~~~ 40 (502)
.-.++|+.++..+|..+.++.-++||.-+..
T Consensus 26 tWvlvYRt~~Yk~LKa~vdK~sKKLE~~K~~ 56 (186)
T KOG3312|consen 26 TWVLVYRTDKYKRLKAEVDKQSKKLEKKKEE 56 (186)
T ss_pred eEEEEEehhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3468999999999999999999998876643
No 21
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=63.49 E-value=13 Score=33.26 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=26.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|+.|.+.+.... .....|+.|
T Consensus 73 g~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3567999999999999999988664432 223445544
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=62.34 E-value=18 Score=37.29 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=37.2
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC-C-----CCCCeecCcccCchhhHHHHHH
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA-P-----EPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A-P-----eP~DIiW~NL~~~~~~~~~R~~ 141 (502)
+..|.|||+|.++.+|..|.+.+.... .....+..| | ....|+-.||.....+.-+|.+
T Consensus 147 ~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~ 213 (346)
T TIGR01659 147 YSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTI 213 (346)
T ss_pred ccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHH
Confidence 446899999999999999988765432 234455544 2 2233666666665555545443
No 23
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=58.91 E-value=13 Score=27.28 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=22.0
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
++.|.|||+|++..+|+.|.+.++..
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCC
Confidence 45899999999999999998876653
No 24
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=57.62 E-value=13 Score=36.01 Aligned_cols=37 Identities=24% Similarity=0.109 Sum_probs=27.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCCCc--eeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENPML--WVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~--~~v~~A 118 (502)
..+.|-|||||.++.+|+.|...+....-.+ .+|++|
T Consensus 228 G~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 228 GLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3457899999999999999988876654333 345554
No 25
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=50.69 E-value=1e+02 Score=30.93 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeccccCCCC---ccHHHHHHHHHHHHHHHHHHHHHHH
Q 010742 348 PLILPLLLIYFVLAYLVYKNQIINVYTTDYESGG---KFWPIAHNSTIVSLVLTQIIALGVF 406 (502)
Q Consensus 348 Plilpf~~~yF~l~y~v~Ky~llyvy~~~~esgG---~~w~~~~~~~~~~l~l~qi~~~g~~ 406 (502)
|..+++|+++.++.+.+||+-+.-+-.... ++. ..+|++.--++.|+++++.+.+-+|
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~lAvliaivIs~pl~l~iF 106 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIAIVISEPLELKIF 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999875533221 111 3555555566677777777666555
No 26
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=49.95 E-value=1.3e+02 Score=29.55 Aligned_cols=51 Identities=14% Similarity=0.005 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccCCCCCcCccccccchhhhHHHHHHHHHHhHhhhhh
Q 010742 19 TVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFDIS 77 (502)
Q Consensus 19 ~l~~L~~~~~~~~~~l~~~~~~~~~~p~~~~~~~g~vd~i~~~~~~i~~l~~~i~~~~~ 77 (502)
++.+++.+.+.+++..++++...+ ++ ++++.+-..++++.+.+.+|+..+.
T Consensus 133 ~y~D~~arl~~l~~~~~rl~~ll~-ka-------~~~~d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 133 QYVDLEARLKNLEAEEERLLELLE-KA-------KTVEDLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hc-------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444433211 00 1445556677778888888776543
No 27
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=49.46 E-value=35 Score=34.79 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=40.0
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC------CCCCeecCcccCchhhHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP------EPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP------eP~DIiW~NL~~~~~~~~~R~~ 141 (502)
.+..|.|||+|.+..+|..|...+.... .....++.|- ....|+-.||.....+..++.+
T Consensus 42 g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~ 109 (352)
T TIGR01661 42 GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESI 109 (352)
T ss_pred CccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHH
Confidence 3467999999999999999988765432 1234455443 2335777777776666555554
No 28
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=48.54 E-value=98 Score=29.26 Aligned_cols=92 Identities=16% Similarity=0.300 Sum_probs=49.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhheeeccccCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHhhc-c--cchh-
Q 010742 341 FICSVMAPLILPLLLIYFVLAYLVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQI-IALGVFGIKR-S--TVAF- 415 (502)
Q Consensus 341 l~Ys~i~Plilpf~~~yF~l~y~v~Ky~llyvy~~~~esgG~~w~~~~~~~~~~l~l~qi-~~~g~~~lk~-~--~~~~- 415 (502)
.++..-.|+.++.+++||+...++-+.|.=+.++. | +-+....|+-+.-+ +..|...+++ + ....
T Consensus 50 ~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~--e--------pYR~FY~~Isli~~l~~~gyvlvr~~s~~~~~y~ 119 (206)
T PF09874_consen 50 YVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF--E--------PYRFFYYGISLIGFLSFLGYVLVRRFSFEVYPYY 119 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech--h--------HHHHHHHHHhhhhheeecchhhheeccchhhhHH
Confidence 44444566667888888888777755555545532 2 22222333322211 2234334433 2 1222
Q ss_pred hhhHHHHHHHHHHHHHHhcccCccccc
Q 010742 416 GFTIPLIFGTLLFNEYCRQRFFPTFTK 442 (502)
Q Consensus 416 ~~~ipl~i~t~~f~~~~~~~f~p~~~~ 442 (502)
+.++...+..++|.+|.+.||.+-+.+
T Consensus 120 ~yL~~v~laVl~fr~~Fr~ky~RdyTy 146 (206)
T PF09874_consen 120 TYLGFVFLAVLAFRYYFRSKYGRDYTY 146 (206)
T ss_pred HHHHHHHHHHHHHhhheeeeeccccee
Confidence 122223446678999999999998775
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=46.35 E-value=1.3e+02 Score=29.69 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=32.4
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCCCCce----eeecCCCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLW----VTELAPEP 121 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~----~v~~APeP 121 (502)
..-..|.+||-|+.+.+|..|...+..+.|..+ .|..|-.|
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 345679999999999999999999988888653 45556555
No 30
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=45.48 E-value=22 Score=29.58 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=32.6
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCCCCceeeecCCCCCCeecCccc
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDVLWSNLC 130 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~APeP~DIiW~NL~ 130 (502)
+.-+.|.|||-|.+..+|....+..+. .+|.....=-.-+|.|-.+.
T Consensus 41 ~~~N~GYAFVNf~~~~~~~~F~~~f~g---~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 41 NKCNLGYAFVNFTSPQAAIRFYKAFNG---KKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHcC---CccccCCCCcEEEEehhHhh
Confidence 455699999999999999999888775 34544333344555554443
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=43.41 E-value=51 Score=34.67 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.5
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.....|+|||+|.++..|..|...++..
T Consensus 161 ~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 161 DGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccccceeEEEEehHHHHHHHHHhhccc
Confidence 3456899999999999999998887654
No 32
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=43.18 E-value=14 Score=32.09 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=23.3
Q ss_pred cCCCCeEEEEEEeecchHHHHHHHHHH
Q 010742 3 YYSSSYLSHQIVYRASTVRKLMNDAEN 29 (502)
Q Consensus 3 ~~~~~~~~v~~~y~~~~l~~L~~~~~~ 29 (502)
-||+-|.+| ++||+++|.+|+-+.+.
T Consensus 74 lhPSG~~~V-lV~Nv~dLe~ldp~~~a 99 (133)
T COG1717 74 LHPSGYEEV-LVHNVKDLEKLDPETQA 99 (133)
T ss_pred cCCCcccee-eeecHHHHhhcCchhHH
Confidence 599999999 89999999999988773
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=41.39 E-value=37 Score=36.11 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=25.0
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENP 110 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p 110 (502)
....|.|||.|.+..+|..|.+.++...-
T Consensus 407 ~~~~G~~fV~F~~~e~A~~A~~~lnGr~f 435 (457)
T TIGR01622 407 KNSAGKIYLKFSSVDAALAAFQALNGRYF 435 (457)
T ss_pred CCCceeEEEEECCHHHHHHHHHHhcCccc
Confidence 45679999999999999999999887543
No 34
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.63 E-value=40 Score=26.17 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=28.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCCCCceeeecCCCCCCe
Q 010742 86 AVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEPNDV 124 (502)
Q Consensus 86 ~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~APeP~DI 124 (502)
....+||+|..+|-.+-+.+... +..++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~---gi~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKN---GIPVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHC---CCcEEEeCCChhc
Confidence 35789999999999888877764 3456778888887
No 35
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=39.38 E-value=3e+02 Score=31.62 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=35.6
Q ss_pred CCCCCCCchhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhe
Q 010742 319 NGFLSFPYHTEVSKLLMFGFLGFICSVMAPLILPLLLIYFVLAYLVYKNQIIN 371 (502)
Q Consensus 319 ~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plilpf~~~yF~l~y~v~Ky~lly 371 (502)
++.|.|.| |-|.+-++-.++|+++..-....++++...++-.+|||-=..
T Consensus 598 nWRPRfky---yHW~LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEyk 647 (1075)
T KOG2082|consen 598 NWRPRFKY---YHWSLSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEYK 647 (1075)
T ss_pred CCCccchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555654 555555555666666666667789999999999999996543
No 36
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.69 E-value=2.9e+02 Score=26.09 Aligned_cols=19 Identities=11% Similarity=0.182 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 010742 419 IPLIFGTLLFNEYCRQRFF 437 (502)
Q Consensus 419 ipl~i~t~~f~~~~~~~f~ 437 (502)
+.+-++++..++|.++||.
T Consensus 184 iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 184 IIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3445566778889998874
No 37
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=38.65 E-value=29 Score=35.41 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=23.4
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.....|.|||+|.+..+|..|.+.++..
T Consensus 307 t~~skG~aFV~F~~~~~A~~Ai~~lnG~ 334 (352)
T TIGR01661 307 TNQCKGYGFVSMTNYDEAAMAILSLNGY 334 (352)
T ss_pred CCCccceEEEEECCHHHHHHHHHHhCCC
Confidence 3456899999999999999999887654
No 38
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=37.78 E-value=42 Score=32.22 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhc
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.+.|||||.|++.|..+...+.
T Consensus 77 ~pvaFatF~s~q~A~aamnaLN 98 (284)
T KOG1457|consen 77 KPVAFATFTSHQFALAAMNALN 98 (284)
T ss_pred cceEEEEecchHHHHHHHHHhc
Confidence 5899999999999999887654
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=37.18 E-value=38 Score=33.40 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.5
Q ss_pred hhccccceEEEEeCCHHHHHHHHHHhc
Q 010742 80 ASEKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 80 ~~~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
...|..|++||+|-+..+|..|.|...
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhC
Confidence 467889999999999999999988654
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=37.16 E-value=45 Score=34.49 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=22.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.++.+.|||+|.+..+|..|.+.+...
T Consensus 232 g~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 232 GTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCC
Confidence 345689999999999999999877654
No 41
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=36.33 E-value=68 Score=25.67 Aligned_cols=44 Identities=7% Similarity=0.125 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHHHHH-HhhhhcccCCCCCcCccccccchhhhHHHHHHHHHHh
Q 010742 18 STVRKLMNDAENMCQLV-KNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVREN 71 (502)
Q Consensus 18 ~~l~~L~~~~~~~~~~l-~~~~~~~~~~p~~~~~~~g~vd~i~~~~~~i~~l~~~ 71 (502)
+....|+++||.+..+- ..++ ++.| + .+|+|+..++++++|-++
T Consensus 19 k~F~~Le~~RE~aIeeav~~c~---~g~p-----F--s~d~IN~vT~~mN~LAk~ 63 (84)
T PF10752_consen 19 KQFLQLEQQREAAIEEAVSLCK---QGEP-----F--STDKINEVTKEMNELAKQ 63 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---CCCC-----C--cHHHHHHHHHHHHHHHHc
Confidence 34556666666665532 2222 1122 1 668899999999888765
No 42
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=35.93 E-value=4.1e+02 Score=25.64 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhcccCc
Q 010742 419 IPLIFGTLLFNEYCRQRFFP 438 (502)
Q Consensus 419 ipl~i~t~~f~~~~~~~f~p 438 (502)
+.-.+.+..+..++++++.=
T Consensus 195 ~~~~~~~~~~~~~~~r~lGG 214 (235)
T PF02654_consen 195 LVALLLALLLARYARRRLGG 214 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 33456777888899988753
No 43
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=35.92 E-value=52 Score=27.85 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHhhhh-hhhh-hccccceEEEEeCCHHHHHHHHHHhccCC
Q 010742 62 SDESDSVRENIGFDI-SDLA-SEKEYAVAFVYFKTRYAAIVAAEVLHSEN 109 (502)
Q Consensus 62 ~~~i~~l~~~i~~~~-~~~~-~~~~~~~AFVtF~s~~~A~~~~q~~~~~~ 109 (502)
.+|..++-.+.-..+ -++. .....|+|||..++..+|..|+..+...+
T Consensus 32 seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 32 SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 455666655532221 1232 34458999999999999999998776544
No 44
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.53 E-value=1.2e+02 Score=24.30 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcCccccccchhhhHHHHHHHHHHhHhhhhh
Q 010742 20 VRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFDIS 77 (502)
Q Consensus 20 l~~L~~~~~~~~~~l~~~~~~~~~~p~~~~~~~g~vd~i~~~~~~i~~l~~~i~~~~~ 77 (502)
...+..+...+..+++.++.....-| |...+++..++++++++++++..++
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lp-------gi~~s~eeq~~~i~~Le~~i~~k~~ 73 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELP-------GIDRSVEEQEEEIEELEEQIRKKRE 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-------CccCCHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777664333322 2335689999999999999887654
No 45
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=33.23 E-value=42 Score=31.79 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
...-|+|||.|.|..-|.+|+.+...
T Consensus 89 GNSKgYAFVEFEs~eVA~IaAETMNN 114 (214)
T KOG4208|consen 89 GNSKGYAFVEFESEEVAKIAAETMNN 114 (214)
T ss_pred CCcCceEEEEeccHHHHHHHHHHhhh
Confidence 34578999999999999999986543
No 46
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=31.85 E-value=89 Score=25.45 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=24.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhccCCC--CceeeecCCCCCCe
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSENP--MLWVTELAPEPNDV 124 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~~p--~~~~v~~APeP~DI 124 (502)
.++|.+-|.++..|..|..-+...+. .+..|...|.++|.
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 58999999999999999877665443 35667778777664
No 47
>PLN03120 nucleic acid binding protein; Provisional
Probab=31.63 E-value=78 Score=31.27 Aligned_cols=35 Identities=23% Similarity=0.108 Sum_probs=23.9
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAP 119 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 119 (502)
..|.|||+|++..+|..|.. +... ......|.+|+
T Consensus 42 ~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57899999999999998885 3322 12344555553
No 48
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=31.24 E-value=96 Score=34.09 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=37.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC--------CCCCeecCcccCchhhHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP--------EPNDVLWSNLCIPYRQLWFRKIA 142 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP--------eP~DIiW~NL~~~~~~~~~R~~~ 142 (502)
.+..|.|||+|.+..+|..|.+.+.... ...+++.++. ....|+=.||..+..+.-++.++
T Consensus 39 ~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F 109 (562)
T TIGR01628 39 RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTF 109 (562)
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHH
Confidence 5668999999999999999998765432 1233443331 12234555666555555455443
No 49
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=30.14 E-value=4.3e+02 Score=24.14 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=27.8
Q ss_pred hhheeeccccCCCCccHHH---------HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhHHHH
Q 010742 368 QIINVYTTDYESGGKFWPI---------AHNSTIVSLVLTQIIALGVFGIKRSTVAFGFTIPLI 422 (502)
Q Consensus 368 ~llyvy~~~~esgG~~w~~---------~~~~~~~~l~l~qi~~~g~~~lk~~~~~~~~~ipl~ 422 (502)
.+-+.-+|+|+.+|++-.. +...+..-+++.=++-++...-.+.|.- .+++|.-
T Consensus 64 ~l~~~~rp~~~~~g~Lv~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w~l-~LvIP~y 126 (170)
T PF05620_consen 64 FLEKMARPKYDETGELVDAGEDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFWWL-YLVIPGY 126 (170)
T ss_pred HHHHhCCCCcCCCCCeecCcccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4445567888755543222 4555555566655555554444455542 3444443
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=29.78 E-value=44 Score=35.62 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.3
Q ss_pred hccccceEEEEeCCHHHHHHHHHH
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
+-+++|.|||.|.++..|+.|.|-
T Consensus 141 rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 141 RGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CCCcccceEEEecCHHHHHHHHHH
Confidence 445899999999999999999884
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=29.27 E-value=94 Score=32.78 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.7
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
....|++||+|.++.+|..+...+|..
T Consensus 73 ~~s~gcCFv~~~trk~a~~a~~Alhn~ 99 (510)
T KOG0144|consen 73 GQSKGCCFVKYYTRKEADEAINALHNQ 99 (510)
T ss_pred CcccceEEEEeccHHHHHHHHHHhhcc
Confidence 456899999999999999988877654
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=28.29 E-value=52 Score=32.36 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=37.0
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCC-----CceeeecCCCCCCeecCcccCchhhHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENP-----MLWVTELAPEPNDVLWSNLCIPYRQLWFRKIAI 143 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p-----~~~~v~~APeP~DIiW~NL~~~~~~~~~R~~~~ 143 (502)
....|+|||-|++..+|+.+...+|.++- ....|..| -+.++|-.||.--
T Consensus 57 g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQ 111 (371)
T KOG0146|consen 57 GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQ 111 (371)
T ss_pred CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHH
Confidence 44589999999999999999999987652 23455554 3456788887643
No 53
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=28.28 E-value=1.4e+02 Score=30.01 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=21.4
Q ss_pred hhccccceEEEEeCCHHHHHHHHHH
Q 010742 80 ASEKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 80 ~~~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
...++.|+|||.|+++.+-++|...
T Consensus 138 vTgkskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 138 VTGKSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccCCccceEEEEeccHHHHHHHHHh
Confidence 4678999999999999988888654
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=28.24 E-value=94 Score=31.82 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=31.9
Q ss_pred HHHHHHhHhhhhhhh--------hhccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 65 SDSVRENIGFDISDL--------ASEKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 65 i~~l~~~i~~~~~~~--------~~~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
+.++++.+.++.+.. ..++|-|.|=|+|++...|..|+|.++.
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcC
Confidence 556665555432211 3568899999999999999999999875
No 55
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=26.14 E-value=5.6e+02 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=16.0
Q ss_pred HHH-HHHHHHHHHHHHHHHH-Hhh
Q 010742 348 PLI-LPLLLIYFVLAYLVYK-NQI 369 (502)
Q Consensus 348 Pli-lpf~~~yF~l~y~v~K-y~l 369 (502)
|+. +..|++-+++.|++.| +|+
T Consensus 195 pi~l~IiGav~lalRfylkkk~NI 218 (226)
T COG4858 195 PIALTIIGAVILALRFYLKKKKNI 218 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444 4578899999998876 444
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=25.28 E-value=1.5e+02 Score=32.90 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=21.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.+..|.|||+|++..+|..|.+.+..
T Consensus 179 gKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 179 KKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred CccCceEEEEcCCHHHHHHHHHHhhc
Confidence 35689999999999999999876543
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=24.11 E-value=1.4e+02 Score=33.13 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=38.2
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--C-CceeeecCCCCCCeecCcccCchhhHHHH
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--P-MLWVTELAPEPNDVLWSNLCIPYRQLWFR 139 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p-~~~~v~~APeP~DIiW~NL~~~~~~~~~R 139 (502)
..++.|.|||+|.+..+|+.|.+.+.... + ..+.+..+-+-..++=.||..+..+.-++
T Consensus 95 sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~ 156 (578)
T TIGR01648 95 SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEIL 156 (578)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHH
Confidence 34568999999999999999998876532 1 22334445445556666666554444333
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=23.72 E-value=1.2e+02 Score=28.30 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.0
Q ss_pred hhccccceEEEEeCCHHHHHHHHHHhc
Q 010742 80 ASEKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 80 ~~~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
...+..|.||+.|.++.+|.-+.+.+.
T Consensus 46 v~~~~qGygF~Ef~~eedadYAikiln 72 (203)
T KOG0131|consen 46 VTQKHQGYGFAEFRTEEDADYAIKILN 72 (203)
T ss_pred hcccccceeEEEEechhhhHHHHHHHH
Confidence 455788999999999999999988753
No 59
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=23.18 E-value=1.6e+02 Score=21.61 Aligned_cols=43 Identities=12% Similarity=0.454 Sum_probs=28.0
Q ss_pred HHHHhhheeeccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010742 364 VYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALGVFGI 408 (502)
Q Consensus 364 v~Ky~llyvy~~~~esgG~~w~~~~~~~~~~l~l~qi~~~g~~~l 408 (502)
..|+.++|.|+.+..++ .+|-.++ +++++.+++-++-++++.+
T Consensus 4 l~rH~~myfce~k~R~N-sF~fVii-k~vismimylilGi~L~yi 46 (54)
T PF04835_consen 4 LFRHCFMYFCENKLRPN-SFWFVII-KSVISMIMYLILGIALIYI 46 (54)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 35888999999876655 4665555 4566666665555555544
No 60
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=23.07 E-value=83 Score=28.76 Aligned_cols=23 Identities=17% Similarity=0.467 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhe
Q 010742 349 LILPLLLIYFVLAYLVYKNQIIN 371 (502)
Q Consensus 349 lilpf~~~yF~l~y~v~Ky~lly 371 (502)
..+|+|++||.+.|++.|+.+.+
T Consensus 11 ~~i~iGl~~f~iYyfvF~flI~k 33 (161)
T PRK09702 11 TQIAIGLCFTLLYFVVFRTLILQ 33 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=22.95 E-value=69 Score=34.57 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.4
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN 109 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~ 109 (502)
..|.|||+|.+..+|+.|.+.++...
T Consensus 463 ~~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 463 GVGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred CcceEEEEECCHHHHHHHHHHcCCCE
Confidence 35889999999999999999887643
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=22.23 E-value=87 Score=31.84 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=23.9
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.+-..|-+||||++..+|..|.+.++..
T Consensus 132 ERGSKGFGFVTmen~~dadRARa~LHgt 159 (376)
T KOG0125|consen 132 ERGSKGFGFVTMENPADADRARAELHGT 159 (376)
T ss_pred cCCCCccceEEecChhhHHHHHHHhhcc
Confidence 3445799999999999999999988764
No 63
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.50 E-value=5.2e+02 Score=26.51 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHhHhhhhhhh
Q 010742 57 SFEVLSDESDSVRENIGFDISDL 79 (502)
Q Consensus 57 ~i~~~~~~i~~l~~~i~~~~~~~ 79 (502)
.+.-.+++++.++++++.+++++
T Consensus 243 ~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667777777776655444
No 64
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=21.16 E-value=1.9e+02 Score=24.67 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHhHhhhhhh
Q 010742 57 SFEVLSDESDSVRENIGFDISD 78 (502)
Q Consensus 57 ~i~~~~~~i~~l~~~i~~~~~~ 78 (502)
.+||+++|+++++.+++..+++
T Consensus 77 RlefI~~Eikr~e~~i~d~q~e 98 (120)
T KOG3478|consen 77 RLEFISKEIKRLENQIRDSQEE 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998765544
No 65
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=20.91 E-value=5.5e+02 Score=30.19 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=36.9
Q ss_pred HHHHHhhheeeccccCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhhhhHHH-HHHHHHHHHHHhcc
Q 010742 363 LVYKNQIINVYTTDYESGGKFWPIAHNSTIVSLVLTQIIALG-VFGIKRSTVAFGFTIPL-IFGTLLFNEYCRQR 435 (502)
Q Consensus 363 ~v~Ky~llyvy~~~~esgG~~w~~~~~~~~~~l~l~qi~~~g-~~~lk~~~~~~~~~ipl-~i~t~~f~~~~~~~ 435 (502)
+.+|-.++.. .+++...-.+-+++=.+-+-...+.|++.+| +|+++.+ .+++..|+ +++++.++.++..+
T Consensus 795 ~~~Ri~llf~-p~k~~P~~~ylr~Vp~~kihlFT~iQl~cl~~l~~ik~t--~aai~FP~~iillVpiR~~llp~ 866 (900)
T TIGR00834 795 LFDRLLLLLM-PPKYHPDVPYVRRVKTWRMHLFTAIQILCLALLWVVKST--PASLAFPFVLILTVPLRRLLLPR 866 (900)
T ss_pred HHHHHHHHhc-CcccCCCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHH--hHHHHhHHHHHHHHHHHHHHHhh
Confidence 5667666554 3333222222233333444455567777665 4555554 34456675 55667777776543
No 66
>PF15159 PIG-Y: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Probab=20.88 E-value=84 Score=24.68 Aligned_cols=26 Identities=19% Similarity=0.622 Sum_probs=22.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHH
Q 010742 342 ICSVMAPLILPLLLIYFVLAYLVYKN 367 (502)
Q Consensus 342 ~Ys~i~Plilpf~~~yF~l~y~v~Ky 367 (502)
-|+.+.|+.+|...++-...|+-.|+
T Consensus 43 yY~lLvPl~iPv~~~~vy~nWls~k~ 68 (72)
T PF15159_consen 43 YYCLLVPLTIPVTIVFVYFNWLSWKF 68 (72)
T ss_pred ceeeehhhhhhHHHHHHHHHHHhHHH
Confidence 36788999999999988888888875
No 67
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=20.51 E-value=2e+02 Score=31.53 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=39.3
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeee-----------cCCCCCCeecCcccCchhhHHHHHHHH
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTE-----------LAPEPNDVLWSNLCIPYRQLWFRKIAI 143 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~-----------~APeP~DIiW~NL~~~~~~~~~R~~~~ 143 (502)
+..|.|||.|.+..+|..|.+.+.... .....+. ..+....|+-.||..+..+..++.++.
T Consensus 127 ~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~ 200 (562)
T TIGR01628 127 KSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA 200 (562)
T ss_pred CcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH
Confidence 467999999999999999987654321 1111111 223344578888887777666666543
Done!