Query 010742
Match_columns 502
No_of_seqs 283 out of 881
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2diu_A KIAA0430 protein; struc 93.6 0.1 3.5E-06 42.1 5.3 41 86-126 47-89 (96)
2 1jmt_A Splicing factor U2AF 35 91.1 0.51 1.8E-05 38.4 6.7 37 83-119 66-104 (104)
3 2dit_A HIV TAT specific factor 90.8 0.73 2.5E-05 37.8 7.6 46 83-128 62-109 (112)
4 2d9o_A DNAJ (HSP40) homolog, s 88.6 0.64 2.2E-05 37.7 5.3 38 82-119 51-88 (100)
5 2dnz_A Probable RNA-binding pr 88.4 0.75 2.6E-05 36.1 5.6 41 82-122 44-86 (95)
6 3v4m_A Splicing factor U2AF 65 88.3 0.8 2.7E-05 37.3 5.8 37 83-119 57-95 (105)
7 3s6e_A RNA-binding protein 39; 88.1 0.56 1.9E-05 39.0 4.8 39 81-119 51-91 (114)
8 2e5j_A Methenyltetrahydrofolat 88.0 0.93 3.2E-05 35.8 6.0 42 80-121 51-94 (97)
9 3p5t_L Cleavage and polyadenyl 86.7 0.53 1.8E-05 36.8 3.7 41 81-121 41-83 (90)
10 4fxv_A ELAV-like protein 1; RN 86.7 0.61 2.1E-05 37.4 4.2 37 82-118 58-96 (99)
11 2jrs_A RNA-binding protein 39; 86.0 0.96 3.3E-05 36.8 5.1 42 82-123 65-108 (108)
12 4a8x_A RNA-binding protein wit 84.7 0.97 3.3E-05 34.7 4.3 37 84-120 46-84 (88)
13 2dnl_A Cytoplasmic polyadenyla 84.2 0.75 2.6E-05 37.8 3.6 24 83-106 50-73 (114)
14 2cqp_A RNA-binding protein 12; 84.1 1.1 3.7E-05 35.4 4.5 40 83-122 55-96 (98)
15 2lkz_A RNA-binding protein 5; 84.0 0.75 2.6E-05 36.8 3.4 27 82-108 50-76 (95)
16 1whw_A Hypothetical protein ri 84.0 1.4 4.7E-05 34.8 5.0 42 81-122 46-89 (99)
17 2dgp_A Bruno-like 4, RNA bindi 83.9 1.7 5.8E-05 34.8 5.6 39 82-120 52-95 (106)
18 2dgv_A HnRNP M, heterogeneous 83.7 1.3 4.3E-05 34.5 4.6 40 82-121 45-86 (92)
19 2x1f_A MRNA 3'-END-processing 83.6 1.4 4.9E-05 34.6 4.9 40 82-121 41-82 (96)
20 1x5t_A Splicing factor 3B subu 83.5 1.4 4.7E-05 34.5 4.8 38 82-119 45-84 (96)
21 2fc8_A NCL protein; structure 83.4 1.3 4.3E-05 35.3 4.6 40 82-121 51-92 (102)
22 2a3j_A U1 small nuclear ribonu 82.3 1.4 4.7E-05 37.3 4.5 46 82-127 69-116 (127)
23 2fy1_A RNA-binding motif prote 82.3 1.9 6.5E-05 35.5 5.4 38 82-119 45-84 (116)
24 1x5s_A Cold-inducible RNA-bind 82.2 1.5 5.1E-05 34.8 4.6 38 82-119 51-90 (102)
25 3s8s_A Histone-lysine N-methyl 82.1 1.3 4.5E-05 36.2 4.3 38 82-119 45-84 (110)
26 1wg1_A KIAA1579 protein, homol 82.0 0.82 2.8E-05 35.5 2.8 40 83-122 38-79 (88)
27 3mdf_A Peptidyl-prolyl CIS-tra 81.9 1.4 4.8E-05 33.6 4.2 27 82-108 46-72 (85)
28 1x5u_A Splicing factor 3B subu 81.6 2.1 7.2E-05 34.1 5.3 39 82-120 54-94 (105)
29 3md1_A Nuclear and cytoplasmic 81.6 1.8 6.2E-05 32.7 4.7 38 82-119 40-79 (83)
30 1nu4_A U1A RNA binding domain; 81.5 1.5 5E-05 34.5 4.2 42 83-124 49-92 (97)
31 2cph_A RNA binding motif prote 81.3 2.4 8.3E-05 33.8 5.6 40 82-121 55-97 (107)
32 2d9p_A Polyadenylate-binding p 81.2 2 6.9E-05 34.1 5.1 38 82-119 52-91 (103)
33 2lxi_A RNA-binding protein 10; 81.2 1.5 5.2E-05 34.3 4.2 37 82-118 41-80 (91)
34 1fj7_A Nucleolin RBD1, protein 81.1 4.6 0.00016 31.8 7.2 37 82-119 55-93 (101)
35 2e44_A Insulin-like growth fac 80.8 3.2 0.00011 32.4 6.0 41 81-121 50-92 (96)
36 1fxl_A Paraneoplastic encephal 80.6 3 0.0001 35.7 6.4 59 82-140 41-107 (167)
37 2do4_A Squamous cell carcinoma 80.6 1.8 6.3E-05 34.2 4.6 39 82-120 55-95 (100)
38 2dnh_A Bruno-like 5, RNA bindi 80.6 2.3 7.7E-05 33.9 5.2 37 83-119 54-95 (105)
39 2jvr_A Nucleolar protein 3; RN 80.6 2.2 7.5E-05 35.1 5.1 38 82-119 64-103 (111)
40 3ns6_A Eukaryotic translation 80.5 1.8 6.1E-05 34.5 4.5 37 82-118 51-90 (100)
41 2dgs_A DAZ-associated protein 80.2 2.8 9.5E-05 33.0 5.5 40 82-122 49-90 (99)
42 1p1t_A Cleavage stimulation fa 80.2 1.7 5.7E-05 34.6 4.2 40 82-121 47-88 (104)
43 2la6_A RNA-binding protein FUS 79.4 2 7E-05 33.9 4.5 27 82-108 60-86 (99)
44 2cqg_A TDP-43, TAR DNA-binding 79.3 1.4 4.7E-05 35.2 3.4 40 82-121 54-93 (103)
45 2cq0_A Eukaryotic translation 79.0 2.3 7.7E-05 33.8 4.6 38 82-119 54-93 (103)
46 2mss_A Protein (musashi1); RNA 79.0 2.1 7.1E-05 31.8 4.1 22 82-103 38-59 (75)
47 2dhg_A TRNA selenocysteine ass 78.9 2.4 8.3E-05 33.7 4.8 37 82-118 48-87 (104)
48 2krb_A Eukaryotic translation 78.9 1.5 5.1E-05 33.3 3.4 26 82-107 44-69 (81)
49 2dnq_A RNA-binding protein 4B; 78.6 3.2 0.00011 32.0 5.3 35 85-119 42-78 (90)
50 1fjc_A Nucleolin RBD2, protein 78.4 1.7 5.9E-05 34.0 3.7 39 81-119 49-89 (96)
51 2fc9_A NCL protein; structure 78.4 2.3 7.9E-05 33.7 4.5 39 81-119 49-89 (101)
52 2pe8_A Splicing factor 45; RRM 78.1 1.8 6.2E-05 35.1 3.8 38 83-120 54-93 (105)
53 1x4h_A RNA-binding protein 28; 78.0 3.2 0.00011 33.4 5.3 25 82-106 54-78 (111)
54 2cpf_A RNA binding motif prote 77.9 2.3 7.8E-05 33.4 4.3 36 83-118 48-85 (98)
55 2e5h_A Zinc finger CCHC-type a 77.6 2.1 7.1E-05 33.3 3.9 26 82-107 55-80 (94)
56 2cpx_A Hypothetical protein FL 77.6 3.2 0.00011 33.6 5.3 39 81-119 63-103 (115)
57 2cpe_A RNA-binding protein EWS 77.5 3.1 0.00011 33.7 5.1 38 82-119 62-101 (113)
58 1wi8_A EIF-4B, eukaryotic tran 77.5 3 0.0001 33.2 4.9 39 82-121 54-94 (104)
59 2cqb_A Peptidyl-prolyl CIS-tra 77.4 2.1 7.3E-05 33.9 4.0 38 82-119 51-90 (102)
60 1wf1_A RNA-binding protein RAL 77.3 2 6.8E-05 34.7 3.9 38 84-121 61-100 (110)
61 1p27_B RNA-binding protein 8A; 77.3 2.7 9.1E-05 33.6 4.6 37 82-118 62-100 (106)
62 2cpj_A Non-POU domain-containi 77.3 2.7 9.4E-05 33.1 4.6 40 83-122 49-90 (99)
63 1b7f_A Protein (SXL-lethal pro 77.2 4.3 0.00015 34.8 6.3 60 82-141 42-109 (168)
64 1x5p_A Negative elongation fac 77.1 2.6 9E-05 33.1 4.5 38 83-120 47-86 (97)
65 2cqi_A Nucleolysin TIAR; RNA r 76.9 2.8 9.7E-05 33.2 4.6 38 84-121 54-93 (103)
66 2hvz_A Splicing factor, argini 76.5 3.8 0.00013 32.3 5.3 35 84-118 36-72 (101)
67 2cqh_A IGF-II mRNA-binding pro 76.5 2.2 7.6E-05 33.2 3.8 37 83-119 42-81 (93)
68 1whx_A Hypothetical protein ri 76.4 2.5 8.5E-05 34.4 4.2 38 83-120 44-83 (111)
69 4f25_A Polyadenylate-binding p 76.4 2.9 9.9E-05 34.2 4.7 36 83-118 43-80 (115)
70 2kvi_A Nuclear polyadenylated 76.3 2.7 9.3E-05 33.0 4.3 34 85-118 45-80 (96)
71 2cpi_A CCR4-NOT transcription 76.3 2.2 7.5E-05 34.7 3.9 37 83-119 61-99 (111)
72 1why_A Hypothetical protein ri 76.3 3.7 0.00013 32.2 5.1 34 85-118 53-90 (97)
73 3bs9_A Nucleolysin TIA-1 isofo 76.2 2 6.9E-05 32.8 3.4 37 82-118 45-83 (87)
74 2cpz_A CUG triplet repeat RNA- 76.2 2.8 9.6E-05 34.1 4.5 38 82-119 64-103 (115)
75 2div_A TRNA selenocysteine ass 76.2 2.8 9.7E-05 32.9 4.4 26 82-107 49-74 (99)
76 2kt5_A RNA and export factor-b 76.1 2.7 9.3E-05 34.7 4.5 38 82-119 73-112 (124)
77 2dgo_A Cytotoxic granule-assoc 76.0 3.1 0.0001 33.8 4.7 37 82-118 54-92 (115)
78 2dnm_A SRP46 splicing factor; 76.0 2.7 9.1E-05 33.4 4.2 38 82-119 52-91 (103)
79 3smz_A Protein raver-1, ribonu 75.8 4.3 0.00015 38.5 6.5 60 82-141 54-115 (284)
80 2j76_E EIF-4B, EIF4B, eukaryot 75.8 3.6 0.00012 32.6 5.0 37 82-119 58-96 (100)
81 2cq3_A RNA-binding protein 9; 75.7 4.2 0.00014 32.2 5.4 38 83-120 53-92 (103)
82 2dis_A Unnamed protein product 75.5 3.2 0.00011 33.2 4.7 36 83-118 50-89 (109)
83 1x4a_A Splicing factor, argini 75.3 3.8 0.00013 32.9 5.1 36 83-118 59-96 (109)
84 1h2v_Z 20 kDa nuclear CAP bind 75.3 2.6 8.8E-05 36.5 4.3 39 82-120 78-118 (156)
85 1x5o_A RNA binding motif, sing 75.2 4 0.00014 33.0 5.2 27 82-108 63-89 (114)
86 2ki2_A SS-DNA binding protein 75.1 2.1 7.3E-05 33.0 3.3 39 82-121 40-80 (90)
87 1uaw_A Mouse-musashi-1; RNP-ty 74.5 2.1 7.2E-05 31.8 3.1 25 82-106 39-63 (77)
88 1oo0_B CG8781-PA, drosophila Y 74.1 3.5 0.00012 33.2 4.5 37 82-118 65-103 (110)
89 2dgu_A Heterogeneous nuclear r 74.0 3.3 0.00011 32.9 4.3 37 85-121 45-83 (103)
90 3ex7_B RNA-binding protein 8A; 73.9 3.9 0.00013 33.7 4.9 38 81-118 60-99 (126)
91 2dgx_A KIAA0430 protein; RRM d 73.6 3.4 0.00012 32.4 4.2 34 85-118 52-87 (96)
92 1x4e_A RNA binding motif, sing 73.6 2.6 8.8E-05 32.1 3.4 26 82-107 44-69 (85)
93 1x4g_A Nucleolysin TIAR; struc 73.2 4.3 0.00015 32.6 4.9 36 85-120 61-98 (109)
94 2nlw_A Eukaryotic translation 72.9 3.2 0.00011 33.3 4.0 40 82-121 58-100 (105)
95 1wg5_A Heterogeneous nuclear r 72.8 3.4 0.00012 33.0 4.1 44 81-126 53-98 (104)
96 2dnp_A RNA-binding protein 14; 72.6 4.8 0.00016 31.0 4.8 35 85-119 43-79 (90)
97 1x4f_A Matrin 3; structural ge 72.5 3.9 0.00013 33.7 4.5 43 83-125 60-106 (112)
98 3nmr_A Cugbp ELAV-like family 72.3 5.5 0.00019 34.3 5.8 59 83-141 45-115 (175)
99 2ywk_A Putative RNA-binding pr 72.1 2.9 9.9E-05 32.5 3.5 27 82-108 54-80 (95)
100 2cqc_A Arginine/serine-rich sp 71.6 2.7 9.3E-05 32.6 3.2 26 82-107 54-79 (95)
101 1wf0_A TDP-43, TAR DNA-binding 71.6 1.6 5.5E-05 33.7 1.8 37 84-120 41-77 (88)
102 2dng_A Eukaryotic translation 71.5 3.7 0.00013 32.6 4.1 38 82-120 53-92 (103)
103 2ek1_A RNA-binding protein 12; 71.5 3 0.0001 32.4 3.4 26 83-108 55-80 (95)
104 2kxn_B Transformer-2 protein h 71.4 5.3 0.00018 33.5 5.2 37 82-118 85-123 (129)
105 1fje_B Nucleolin RBD12, protei 71.1 3.4 0.00012 36.0 4.0 38 81-118 132-171 (175)
106 1b7f_A Protein (SXL-lethal pro 71.1 4.2 0.00014 34.9 4.6 28 82-109 128-155 (168)
107 2cpd_A Apobec-1 stimulating pr 71.0 4.6 0.00016 31.7 4.5 35 84-118 50-86 (99)
108 3he5_A Synzip1; heterodimeric 70.7 8.2 0.00028 25.4 4.6 20 54-73 29-48 (49)
109 3ucg_A Polyadenylate-binding p 70.6 3.5 0.00012 31.5 3.6 37 81-118 44-82 (89)
110 1fxl_A Paraneoplastic encephal 70.6 4.3 0.00015 34.6 4.6 28 82-109 127-154 (167)
111 2bz2_A Negative elongation fac 70.4 5.9 0.0002 32.8 5.2 37 83-119 71-109 (121)
112 2xnq_A Nuclear polyadenylated 70.1 5.4 0.00019 31.4 4.7 35 84-118 56-92 (97)
113 2f3j_A RNA and export factor b 70.0 4.1 0.00014 36.3 4.3 42 82-123 126-169 (177)
114 3lqv_A PRE-mRNA branch site pr 69.7 5.5 0.00019 32.2 4.8 39 82-120 44-84 (115)
115 2dgw_A Probable RNA-binding pr 69.2 3 0.0001 32.2 2.9 36 82-118 47-84 (91)
116 1iqt_A AUF1, heterogeneous nuc 69.1 2.2 7.6E-05 31.5 2.0 23 82-104 38-60 (75)
117 2ku7_A MLL1 PHD3-CYP33 RRM chi 69.1 3.7 0.00013 34.4 3.7 26 82-107 102-127 (140)
118 2dgt_A RNA-binding protein 30; 69.0 5.6 0.00019 30.7 4.5 35 85-119 44-80 (92)
119 3d2w_A TAR DNA-binding protein 68.9 2.5 8.4E-05 33.0 2.3 19 83-101 46-64 (89)
120 2err_A Ataxin-2-binding protei 68.7 4 0.00014 32.9 3.7 36 83-118 67-104 (109)
121 3sde_A Paraspeckle component 1 68.0 8.1 0.00028 36.3 6.3 59 83-141 56-116 (261)
122 2ytc_A PRE-mRNA-splicing facto 67.5 4.5 0.00016 30.6 3.6 22 84-105 47-68 (85)
123 1x4c_A Splicing factor, argini 67.4 3.9 0.00013 32.9 3.3 22 86-107 51-72 (108)
124 3ulh_A THO complex subunit 4; 67.3 4 0.00014 32.5 3.4 28 81-108 66-93 (107)
125 2jvo_A Nucleolar protein 3; nu 67.2 6.2 0.00021 31.8 4.6 34 85-118 65-100 (108)
126 1wex_A Hypothetical protein (r 66.7 6.2 0.00021 31.8 4.4 36 84-119 50-89 (104)
127 2do0_A HnRNP M, heterogeneous 66.3 6.4 0.00022 31.7 4.5 26 82-107 53-78 (114)
128 3r27_A HnRNP L, heterogeneous 66.1 5.4 0.00019 32.2 3.9 24 84-107 56-79 (100)
129 2lea_A Serine/arginine-rich sp 66.0 6 0.00021 33.4 4.4 37 82-118 86-124 (135)
130 1u6f_A Tcubp1, RNA-binding pro 65.9 6.2 0.00021 33.1 4.5 37 82-118 81-119 (139)
131 1x4d_A Matrin 3; structural ge 65.7 5.2 0.00018 32.3 3.7 37 85-121 52-92 (102)
132 3nmr_A Cugbp ELAV-like family 65.7 6.1 0.00021 34.0 4.5 27 82-108 133-159 (175)
133 2i2y_A Fusion protein consists 65.4 8.5 0.00029 32.8 5.4 38 84-121 109-148 (150)
134 1fje_B Nucleolin RBD12, protei 65.3 16 0.00053 31.5 7.2 60 81-141 50-119 (175)
135 3md3_A Nuclear and cytoplasmic 65.2 13 0.00044 31.5 6.6 59 82-140 38-106 (166)
136 2e5i_A Heterogeneous nuclear r 64.4 11 0.00038 31.5 5.7 38 85-122 61-103 (124)
137 3ue2_A Poly(U)-binding-splicin 64.3 4.4 0.00015 33.7 3.1 36 85-120 71-108 (118)
138 3md3_A Nuclear and cytoplasmic 64.2 5.9 0.0002 33.7 4.1 27 82-108 126-152 (166)
139 2la4_A Nuclear and cytoplasmic 64.0 5.6 0.00019 31.3 3.6 25 83-107 61-85 (101)
140 3beg_B Splicing factor, argini 63.9 5.3 0.00018 32.6 3.5 23 86-108 52-74 (115)
141 2lmi_A GRSF-1, G-rich sequence 63.6 5.2 0.00018 32.1 3.4 24 82-106 52-75 (107)
142 3zzy_A Polypyrimidine tract-bi 63.3 5.4 0.00018 33.8 3.5 35 87-121 68-106 (130)
143 2kn4_A Immunoglobulin G-bindin 63.0 6.8 0.00023 33.6 4.3 37 82-118 109-147 (158)
144 2khc_A Testis-specific RNP-typ 62.8 4.6 0.00016 32.8 3.0 26 82-107 79-104 (118)
145 1sjq_A Polypyrimidine tract-bi 62.5 7.2 0.00025 31.7 4.0 35 85-119 52-90 (105)
146 2cq2_A Hypothetical protein LO 62.5 5.7 0.00019 32.9 3.4 25 84-108 62-86 (114)
147 3s7r_A Heterogeneous nuclear r 62.3 4.1 0.00014 31.1 2.4 23 82-104 50-72 (87)
148 2m2b_A RNA-binding protein 10; 61.9 4.5 0.00015 33.8 2.8 26 82-108 64-89 (131)
149 2jwn_A Embryonic polyadenylate 61.8 8.3 0.00028 31.6 4.4 37 82-119 75-113 (124)
150 1s79_A Lupus LA protein; RRM, 61.7 5.1 0.00017 32.2 3.0 22 82-103 49-70 (103)
151 2adc_A Polypyrimidine tract-bi 61.4 18 0.00061 33.1 7.2 23 85-107 72-94 (229)
152 2wbr_A GW182, gawky, LD47780P; 61.3 6.7 0.00023 31.0 3.4 35 84-118 42-78 (89)
153 2cq1_A PTB-like protein L; RRM 60.9 5.6 0.00019 31.9 3.1 35 85-119 51-89 (101)
154 2qfj_A FBP-interacting repress 60.8 19 0.00064 32.1 7.1 27 82-108 67-93 (216)
155 2hzc_A Splicing factor U2AF 65 60.6 6.1 0.00021 29.9 3.2 23 84-107 52-74 (87)
156 2e5g_A U6 snRNA-specific termi 60.5 7.4 0.00025 30.2 3.7 35 87-122 47-83 (94)
157 2cqd_A RNA-binding region cont 60.4 4.9 0.00017 32.6 2.7 37 82-118 56-93 (116)
158 2dnn_A RNA-binding protein 12; 60.3 5.9 0.0002 32.3 3.2 22 82-103 53-74 (109)
159 2qfj_A FBP-interacting repress 59.9 9.5 0.00033 34.1 4.9 37 82-118 164-202 (216)
160 2dh8_A DAZ-associated protein 59.9 5.6 0.00019 31.6 2.9 22 83-104 56-77 (105)
161 2cpy_A RNA-binding protein 12; 59.6 4.9 0.00017 32.7 2.6 23 82-104 54-76 (114)
162 3n9u_C Cleavage and polyadenyl 59.2 7.9 0.00027 33.6 4.0 38 81-118 95-134 (156)
163 2ad9_A Polypyrimidine tract-bi 59.0 7.6 0.00026 32.3 3.7 35 85-119 67-105 (119)
164 2rs2_A Musashi-1, RNA-binding 58.6 6.8 0.00023 31.6 3.3 37 82-118 64-101 (109)
165 1sjr_A Polypyrimidine tract-bi 58.1 14 0.00047 32.7 5.3 37 83-119 82-122 (164)
166 2g4b_A Splicing factor U2AF 65 57.3 6.6 0.00023 33.8 3.2 27 82-108 133-159 (172)
167 3u1l_A PRE-mRNA-splicing facto 57.2 11 0.00038 35.4 4.9 26 84-109 178-203 (240)
168 2cjk_A Nuclear polyadenylated 56.9 5.4 0.00019 34.1 2.5 60 82-141 42-107 (167)
169 1qm9_A Polypyrimidine tract-bi 56.7 17 0.00058 32.1 5.9 23 85-107 41-63 (198)
170 2db1_A Heterogeneous nuclear r 56.5 5.2 0.00018 32.8 2.2 22 82-103 58-79 (118)
171 1wez_A HnRNP H', FTP-3, hetero 56.4 4.4 0.00015 32.4 1.7 23 82-104 52-74 (102)
172 1x4b_A Heterogeneous nuclear r 56.2 6.9 0.00023 31.7 2.9 23 82-104 66-88 (116)
173 3egn_A RNA-binding protein 40; 56.2 7.2 0.00025 32.9 3.2 37 82-118 89-127 (143)
174 2dha_A FLJ20171 protein; RRM d 54.4 5.5 0.00019 33.3 2.0 23 82-104 65-87 (123)
175 2hgl_A HNRPF protein, heteroge 54.0 6.4 0.00022 33.5 2.4 24 82-106 85-108 (136)
176 1wel_A RNA-binding protein 12; 53.9 5.6 0.00019 32.8 2.0 25 82-107 64-88 (124)
177 2hgm_A HNRPF protein, heteroge 53.8 5.9 0.0002 33.3 2.1 23 82-104 81-103 (126)
178 3tyt_A Heterogeneous nuclear r 53.5 22 0.00076 32.1 6.2 24 84-107 41-64 (205)
179 2g4b_A Splicing factor U2AF 65 53.4 24 0.00082 30.0 6.2 58 83-141 49-114 (172)
180 4f02_A Polyadenylate-binding p 53.1 21 0.00071 32.2 6.0 60 82-141 54-123 (213)
181 1l8d_A DNA double-strand break 50.0 14 0.00049 30.0 3.9 29 47-75 47-83 (112)
182 2cq4_A RNA binding motif prote 49.6 8.6 0.00029 31.0 2.5 24 82-106 64-87 (114)
183 1rk8_A CG8781-PA, CG8781-PA pr 49.3 12 0.0004 32.6 3.4 25 83-107 112-136 (165)
184 3smz_A Protein raver-1, ribonu 47.5 16 0.00054 34.4 4.4 41 82-122 223-265 (284)
185 2cjk_A Nuclear polyadenylated 47.0 12 0.00041 31.9 3.2 36 82-118 126-163 (167)
186 4f02_A Polyadenylate-binding p 46.3 15 0.00053 33.1 3.9 36 83-118 141-178 (213)
187 2yh0_A Splicing factor U2AF 65 45.3 15 0.0005 32.3 3.5 37 82-118 153-191 (198)
188 1l3k_A Heterogeneous nuclear r 45.2 25 0.00084 30.7 5.0 59 82-140 52-123 (196)
189 2yh0_A Splicing factor U2AF 65 44.4 24 0.00082 30.8 4.8 22 82-103 48-69 (198)
190 3sde_A Paraspeckle component 1 44.3 18 0.00063 33.8 4.2 25 82-106 134-158 (261)
191 1qm9_A Polypyrimidine tract-bi 44.1 20 0.0007 31.5 4.3 25 84-108 157-181 (198)
192 2lcw_A RNA-binding protein FUS 49.6 4.9 0.00017 32.7 0.0 26 82-107 54-79 (116)
193 2xs2_A Deleted in azoospermia- 43.6 4.9 0.00017 31.7 0.0 22 82-103 47-68 (102)
194 2kn4_A Immunoglobulin G-bindin 43.1 39 0.0013 28.6 5.8 61 82-142 10-91 (158)
195 3pgw_A U1-A; protein-RNA compl 43.0 24 0.00083 33.1 4.9 43 81-123 48-92 (282)
196 3q2s_C Cleavage and polyadenyl 41.8 14 0.00048 34.2 2.9 38 82-119 109-148 (229)
197 2adc_A Polypyrimidine tract-bi 41.1 29 0.00098 31.7 4.9 36 84-119 188-226 (229)
198 2voo_A Lupus LA protein; RNA-b 40.3 16 0.00053 32.9 2.9 24 82-105 147-170 (193)
199 3pgw_A U1-A; protein-RNA compl 40.1 24 0.0008 33.2 4.3 24 85-108 244-267 (282)
200 2hgn_A Heterogeneous nuclear r 38.6 12 0.00041 31.9 1.7 22 82-103 83-104 (139)
201 3dxb_A Thioredoxin N-terminall 36.3 29 0.00099 31.4 4.1 37 83-119 173-211 (222)
202 1l3k_A Heterogeneous nuclear r 36.1 20 0.0007 31.3 2.9 23 82-104 143-165 (196)
203 3tyt_A Heterogeneous nuclear r 35.9 25 0.00085 31.8 3.5 25 84-108 164-188 (205)
204 2rdd_B UPF0092 membrane protei 34.5 21 0.00071 23.1 1.9 18 344-361 4-21 (37)
205 3pgw_S U1-70K; protein-RNA com 34.2 34 0.0012 34.9 4.6 40 81-120 140-181 (437)
206 1lq7_A Alpha3W; three helix bu 33.4 1.2E+02 0.004 21.2 5.6 14 59-72 28-41 (67)
207 3nmd_A CGMP dependent protein 31.7 1.3E+02 0.0044 22.5 6.1 23 58-80 42-64 (72)
208 3tht_A Alkylated DNA repair pr 30.9 31 0.0011 34.1 3.5 25 84-108 55-79 (345)
209 1go4_E MAD1 (mitotic arrest de 30.8 89 0.0031 25.0 5.5 22 19-40 20-41 (100)
210 2ghp_A U4/U6 snRNA-associated 30.8 49 0.0017 31.0 4.9 57 84-142 80-138 (292)
211 2ghp_A U4/U6 snRNA-associated 27.7 54 0.0018 30.8 4.5 25 83-107 157-181 (292)
212 2dnr_A Synaptojanin-1; RRM dom 24.9 55 0.0019 25.7 3.3 33 85-118 49-83 (91)
213 2lf0_A Uncharacterized protein 24.4 1.4E+02 0.0049 24.5 5.6 45 19-75 11-55 (123)
214 2dhx_A Poly (ADP-ribose) polym 23.3 79 0.0027 25.5 3.9 45 86-130 48-95 (104)
215 3twe_A Alpha4H; unknown functi 23.2 72 0.0024 18.4 2.6 12 21-32 11-22 (27)
216 1deq_A Fibrinogen (alpha chain 22.1 73 0.0025 31.7 4.2 50 20-70 136-190 (390)
217 1ufw_A Synaptojanin 2; RNP dom 21.0 90 0.0031 24.7 3.8 22 85-107 58-79 (95)
No 1
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.56 E-value=0.1 Score=42.09 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=34.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCCC--CceeeecCCCCCCeec
Q 010742 86 AVAFVYFKTRYAAIVAAEVLHSENP--MLWVTELAPEPNDVLW 126 (502)
Q Consensus 86 ~~AFVtF~s~~~A~~~~q~~~~~~p--~~~~v~~APeP~DIiW 126 (502)
|.|||+|.++.+|+.|.+.++...- ..+++..|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 9999999999999999988776543 4678999999999864
No 2
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=91.05 E-value=0.51 Score=38.40 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=27.7
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
++.|.|||+|.+..+|..|.+.++... .....++.+|
T Consensus 66 ~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 66 HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred CccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 458999999999999999998876542 2234556665
No 3
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.84 E-value=0.73 Score=37.76 Aligned_cols=46 Identities=15% Similarity=0.010 Sum_probs=33.4
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCCCeecCc
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPEPNDVLWSN 128 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW~N 128 (502)
++.|.|||+|.+..+|..|.+.+... +.....++.|.+..|.-++.
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 46899999999999999999877653 22345677776666654443
No 4
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.57 E-value=0.64 Score=37.68 Aligned_cols=38 Identities=21% Similarity=-0.030 Sum_probs=27.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCCCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+...........|++|-
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 46789999999999999999887544333445666653
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.41 E-value=0.75 Score=36.07 Aligned_cols=41 Identities=17% Similarity=0.046 Sum_probs=30.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPN 122 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~ 122 (502)
.++.|.|||+|.+..+|..|.+.++... .....|+.|.++.
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 44 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 4567899999999999999998765432 2456677775544
No 6
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=88.32 E-value=0.8 Score=37.33 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=27.2
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
++.|.|||+|.+..+|..|.+.++... .....++.+|
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 357999999999999999999887542 2234455554
No 7
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=88.12 E-value=0.56 Score=39.01 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=28.2
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
+..+.|.|||+|.+..+|..|.+.+.... .....++.+|
T Consensus 51 ~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 51 KNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 33457999999999999999999887542 2234455554
No 8
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.00 E-value=0.93 Score=35.85 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=30.7
Q ss_pred hhccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 80 ASEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 80 ~~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
...+..|.|||+|.+..+|..|.+.+.... .....|+.|-++
T Consensus 51 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 51 TWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp EEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred EcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 344678999999999999999998766542 345667766443
No 9
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=86.73 E-value=0.53 Score=36.82 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=27.0
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
..++.|.|||+|.+..+|..|.+.+.... .....|+.|..|
T Consensus 41 ~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 41 NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 34567899999999999999998776543 234556665444
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=86.70 E-value=0.61 Score=37.43 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=27.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 58 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3457899999999999999998765432 234556666
No 11
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=86.05 E-value=0.96 Score=36.81 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=31.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPND 123 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~D 123 (502)
.++.|.|||+|.+..+|..|.+.+.... .....|+.|-+..|
T Consensus 65 g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d 108 (108)
T 2jrs_A 65 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 108 (108)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence 3557899999999999999998766532 24567777766554
No 12
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=84.67 E-value=0.97 Score=34.70 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=27.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
..|.|||+|.+..+|..|.+.+.... .....++.|-.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 78999999999999999998766532 22345555533
No 13
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.25 E-value=0.75 Score=37.76 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=21.1
Q ss_pred cccceEEEEeCCHHHHHHHHHHhc
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
++.|.|||+|.+..+|+.|.+.++
T Consensus 50 ~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 50 PPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CcccEEEEEECCHHHHHHHHHhhh
Confidence 568999999999999999988763
No 14
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.11 E-value=1.1 Score=35.35 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=29.7
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPEPN 122 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~ 122 (502)
++.|.|||+|.+..+|..|.+.+... +.....|+.|-.|.
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 45799999999999999999876643 22345677776553
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=83.98 E-value=0.75 Score=36.76 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.++.|.|||+|.+..+|..|.+.++..
T Consensus 50 g~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 50 QQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp SSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred CCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 456789999999999999999887764
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.98 E-value=1.4 Score=34.83 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=29.6
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPEPN 122 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~ 122 (502)
..+..|.|||+|.+..+|..|.+.+... +.....|+.|-.+.
T Consensus 46 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 46 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 3456799999999999999998776543 22345666665443
No 17
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=83.90 E-value=1.7 Score=34.76 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=28.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC-----CCceeeecCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN-----PMLWVTELAPE 120 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~-----p~~~~v~~APe 120 (502)
.+..|.|||+|.+..+|..|.+.++... .....|+.|-.
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 52 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 4467999999999999999998766532 24556666643
No 18
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=83.74 E-value=1.3 Score=34.48 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=28.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
.+..|.|||+|.+..+|..|.+.++... .....|+.|-.+
T Consensus 45 g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3467899999999999999988766432 234556655433
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=83.56 E-value=1.4 Score=34.61 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=29.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
.+..|.|||+|.+..+|..|.+.+.... .....++.|-++
T Consensus 41 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 41 GRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp CCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 4558999999999999999998765432 234566766443
No 20
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.49 E-value=1.4 Score=34.53 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=27.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.++.|.|||+|.+..+|..|.+.++... .....|+.|-
T Consensus 45 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 45 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 4457899999999999999988665432 2345566653
No 21
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.37 E-value=1.3 Score=35.30 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=28.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
.+..|.|||+|.+..+|..|.+.++... .....|+.|-.+
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 51 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 3457899999999999999988765532 234566666433
No 22
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=82.28 E-value=1.4 Score=37.31 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=34.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCCeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPNDVLWS 127 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~DIiW~ 127 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|-.+.|....
T Consensus 69 ~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 69 DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 3568999999999999999998776543 235677888777766543
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=82.25 E-value=1.9 Score=35.49 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=27.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 45 g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 45 SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4567999999999999999998765432 2345565553
No 24
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.21 E-value=1.5 Score=34.84 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=27.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.++.|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 51 QRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3467899999999999999998766432 2345566553
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=82.10 E-value=1.3 Score=36.24 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.++.|.|||+|.+..+|+.|.+.+.... .....|+.|+
T Consensus 45 g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 45 RKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4568999999999999999998776542 2345677775
No 26
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=81.99 E-value=0.82 Score=35.51 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=30.6
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPEPN 122 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~ 122 (502)
+..|.|||+|.+..+|..|.+.++.. +.....++.||...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 66799999999999999999876543 23456778887543
No 27
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=81.94 E-value=1.4 Score=33.56 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=22.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.++.|.|||+|.+..+|..|.+.++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 46 EKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CccccEEEEEECCHHHHHHHHHHhCCC
Confidence 446889999999999999999876543
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.58 E-value=2.1 Score=34.11 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=28.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
.+..|.|||+|.+..+|..|.+.++... .....|+.|-.
T Consensus 54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 54 GQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp CSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4567899999999999999998766432 23456666643
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=81.55 E-value=1.8 Score=32.73 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=27.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.++.|.|||+|.+..+|..|.+.+.... .....++.|-
T Consensus 40 ~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 40 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 4558899999999999999998765432 2344566653
No 30
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=81.46 E-value=1.5 Score=34.47 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=30.5
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCCe
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPNDV 124 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~DI 124 (502)
+..|.|||+|.+..+|..|.+.++... .....++.|-.+.+.
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 49 KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp HHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 456899999999999999998766532 234567777655543
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.27 E-value=2.4 Score=33.81 Aligned_cols=40 Identities=30% Similarity=0.208 Sum_probs=28.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHh-ccC--CCCceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVL-HSE--NPMLWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~-~~~--~p~~~~v~~APeP 121 (502)
.+..|.|||+|.+..+|..|.+.+ ... +.....|+.|-..
T Consensus 55 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 55 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp CSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred CCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 445899999999999999999877 432 2235567766433
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.22 E-value=2 Score=34.14 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=27.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+.++... .....|+.|-
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 52 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 3567899999999999999988765432 2345666653
No 33
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=81.20 E-value=1.5 Score=34.34 Aligned_cols=37 Identities=16% Similarity=-0.003 Sum_probs=26.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC---CCCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE---NPMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~---~p~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+.+.+. +.....|+.|
T Consensus 41 ~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 41 GQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 456789999999999999998764321 2234566655
No 34
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=81.07 E-value=4.6 Score=31.79 Aligned_cols=37 Identities=16% Similarity=0.016 Sum_probs=26.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.++.|.|||+|.+..+|..|.+ +.... .....|+.|-
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4567899999999999999998 65432 2345566653
No 35
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.84 E-value=3.2 Score=32.41 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=29.2
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
..+..+.|||+|.+..+|..|.+.+.... .....|+.|.+.
T Consensus 50 ~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 50 TDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred cCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 33445569999999999999988765432 345677777654
No 36
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=80.65 E-value=3 Score=35.71 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=38.7
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC------CCCeecCcccCchhhHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE------PNDVLWSNLCIPYRQLWFRK 140 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe------P~DIiW~NL~~~~~~~~~R~ 140 (502)
.++.|.|||+|.+..+|..|.+.+.... .....+..|.. ...+.-.||.....+.-++.
T Consensus 41 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 107 (167)
T 1fxl_A 41 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 107 (167)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHH
T ss_pred CcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHH
Confidence 3456899999999999999998665432 22344555442 23477778876655554544
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.65 E-value=1.8 Score=34.18 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPE 120 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 120 (502)
.++.|.|||+|.+..+|..|.+.+... +.....|+.|-.
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 55 GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 345789999999999999998776542 223456666643
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=80.63 E-value=2.3 Score=33.93 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=27.6
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--C---CceeeecCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--P---MLWVTELAP 119 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p---~~~~v~~AP 119 (502)
+..|.|||+|.+..+|..|.+.++... . ....|+.|-
T Consensus 54 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 54 SSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 447899999999999999998766542 2 445666663
No 39
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=80.61 E-value=2.2 Score=35.10 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=27.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.++.|.|||+|.+..+|..|.+.+.... .....|+.|.
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4578999999999999999998765432 2345666653
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=80.46 E-value=1.8 Score=34.50 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=27.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCC---CceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENP---MLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p---~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+.+....- ....|..|
T Consensus 51 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 51 GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 45679999999999999999987765432 23455554
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.21 E-value=2.8 Score=33.02 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=27.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPN 122 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~ 122 (502)
.+..|.|||+|.+..+|..|.+ +.... .....|+.|-.++
T Consensus 49 ~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 49 QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred CCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 4567999999999999999988 44322 2345666664433
No 42
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.19 E-value=1.7 Score=34.61 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=29.0
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
.++.|.|||+|.+..+|..|.+.+.... ...+.++.|-.+
T Consensus 47 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 47 GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp TEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 3457999999999999999998765432 234566666543
No 43
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=79.43 E-value=2 Score=33.88 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=22.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.+..|.|||+|.+..+|..|.+.+...
T Consensus 60 g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 60 GKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345789999999999999999876643
No 44
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.29 E-value=1.4 Score=35.19 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=27.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCCCceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~APeP 121 (502)
.++.|.|||+|.+..+|..|.+..+.-+.....++.|-..
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 54 GHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTT
T ss_pred CCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCC
Confidence 4457899999999999999887422222344566666433
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.98 E-value=2.3 Score=33.83 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=27.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.++.|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 54 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 3457899999999999999998765432 2334555553
No 46
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=78.97 E-value=2.1 Score=31.78 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.9
Q ss_pred ccccceEEEEeCCHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAE 103 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q 103 (502)
.++.|.|||+|.+..+|..|.+
T Consensus 38 ~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 38 NRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp TTSCBEEEEECSCHHHHHHHHS
T ss_pred CCcCcEEEEEECCHHHHHHHHH
Confidence 4567899999999999988876
No 47
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.89 E-value=2.4 Score=33.68 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=26.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC---CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN---PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~---p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.++... .....++.|
T Consensus 48 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 48 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3467899999999999999998766433 233455555
No 48
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=78.87 E-value=1.5 Score=33.29 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.++.|.|||+|.+..+|..|.+.+..
T Consensus 44 g~~~g~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 44 GKTKGYIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp TBCCCEEEEEESSHHHHHHHHTTSSS
T ss_pred CcEeEEEEEEECCHHHHHHHHHHhcC
Confidence 35679999999999999999886654
No 49
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.60 E-value=3.2 Score=32.04 Aligned_cols=35 Identities=23% Similarity=0.111 Sum_probs=25.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAP 119 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 119 (502)
.|.|||+|.+..+|..|.+.++.. +.....|+.|-
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 589999999999999998876543 22345666653
No 50
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=78.44 E-value=1.7 Score=33.99 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=28.4
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAP 119 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 119 (502)
..+..|.|||+|.+..+|..|.+.++.. +.....++.|.
T Consensus 49 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3456789999999999999998876542 22345677663
No 51
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.38 E-value=2.3 Score=33.66 Aligned_cols=39 Identities=21% Similarity=0.082 Sum_probs=27.9
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
..+..|.|||+|.+..+|..|.+.++... .....|+.|-
T Consensus 49 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 49 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 34568999999999999999998765422 2345566553
No 52
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=78.15 E-value=1.8 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.043 Sum_probs=28.8
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
++.|.|||+|.+..+|..|.+.++... .....++.|++
T Consensus 54 ~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 54 DEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 457999999999999999999877542 23455666653
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.00 E-value=3.2 Score=33.37 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=21.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.++.|.|||+|.+..+|..|.+.+.
T Consensus 54 g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 54 EHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCccEEEEEECCHHHHHHHHHHhc
Confidence 3568899999999999999998775
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.90 E-value=2.3 Score=33.42 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=25.9
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
+..|.|||+|.+..+|..|.+.++... .....|+.|
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 557899999999999999998765432 223445544
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.63 E-value=2.1 Score=33.34 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=21.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.++.|.|||+|.+..+|..|.+.+..
T Consensus 55 ~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 55 RKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp CCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred CCcccEEEEEECCHHHHHHHHHHcCC
Confidence 34578999999999999999887654
No 56
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.56 E-value=3.2 Score=33.58 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=28.2
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
..+..|.|||+|.+..+|..|.+.++... .....|+.|-
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45567999999999999999998765432 2345566553
No 57
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.53 E-value=3.1 Score=33.65 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=27.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 62 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 62 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred CCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 3557899999999999999998765432 2334555553
No 58
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.50 E-value=3 Score=33.22 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=27.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
.+..|.|||+|.+..+|..|. .+.... .....|+.|-++
T Consensus 54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 54 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp TSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 455789999999999999998 554322 234566666443
No 59
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.36 E-value=2.1 Score=33.86 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=27.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 51 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 4568999999999999999988665321 2345566553
No 60
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=77.30 E-value=2 Score=34.74 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=27.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
..|.|||+|.+..+|..|.+.+.... .....|+.|-+|
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 56899999999999999987765432 234566766433
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=77.27 E-value=2.7 Score=33.56 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=26.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 62 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 62 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4457999999999999999988765432 234455544
No 62
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.26 E-value=2.7 Score=33.10 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=29.1
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPN 122 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~ 122 (502)
+..|.|||+|.+..+|..|.+.++... .....|+.|-.+.
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 346899999999999999988766532 2456677765433
No 63
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=77.21 E-value=4.3 Score=34.84 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=39.7
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC------CCCCeecCcccCchhhHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP------EPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP------eP~DIiW~NL~~~~~~~~~R~~ 141 (502)
.++.|.|||+|.+..+|..|.+.+.... .....+..|. .+.-|.-.||.....+..++.+
T Consensus 42 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 109 (168)
T 1b7f_A 42 GYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTI 109 (168)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHH
T ss_pred CccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHh
Confidence 3456899999999999999988665432 2233444443 3455777888876665555543
No 64
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.12 E-value=2.6 Score=33.11 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=27.6
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPE 120 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 120 (502)
+..|.|||+|.+..+|..|.+.++.. +...+.|+.|-.
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 56789999999999999998876543 223456666643
No 65
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.89 E-value=2.8 Score=33.24 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=27.4
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPEP 121 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 121 (502)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 4689999999999999998866542 2234566666433
No 66
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=76.52 E-value=3.8 Score=32.35 Aligned_cols=35 Identities=26% Similarity=0.111 Sum_probs=25.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
+.|.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 67999999999999999988654322 233455554
No 67
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.52 E-value=2.2 Score=33.16 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=27.3
Q ss_pred cccceEEEEeCCHHHHHHHHHHhcc-C--CCCceeeecCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHS-E--NPMLWVTELAP 119 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~-~--~p~~~~v~~AP 119 (502)
...|.|||+|.+..+|..|.+.++. . +.....++.|-
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 4578999999999999999987765 2 22345566653
No 68
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.41 E-value=2.5 Score=34.42 Aligned_cols=38 Identities=24% Similarity=0.072 Sum_probs=28.3
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
+..|.|||+|.+..+|..|.+.++... .....|+.|+.
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 356899999999999999998776542 23456666653
No 69
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=76.36 E-value=2.9 Score=34.19 Aligned_cols=36 Identities=22% Similarity=0.037 Sum_probs=26.1
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCCC--CceeeecC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSENP--MLWVTELA 118 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~p--~~~~v~~A 118 (502)
...|.|||+|.+..+|+.|.+.++...- ....|+.|
T Consensus 43 ~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 43 GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3468999999999999999987665422 23455555
No 70
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=76.32 E-value=2.7 Score=32.99 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=25.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 45 NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 6899999999999999998765432 234456555
No 71
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.28 E-value=2.2 Score=34.65 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=26.8
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
++.|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred CCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 345899999999999999998765432 2345566653
No 72
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.27 E-value=3.7 Score=32.19 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=25.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhccCC----CCceeeecC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSEN----PMLWVTELA 118 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~~----p~~~~v~~A 118 (502)
.|.|||+|.+..+|..|.+.++... .....|+.|
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 6899999999999999988765432 234566665
No 73
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=76.19 E-value=2 Score=32.80 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=26.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+.+.... .....++.|
T Consensus 45 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 45 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4467899999999999999998765432 223445443
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=76.16 E-value=2.8 Score=34.07 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=27.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 64 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 64 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 3456899999999999999998765432 2344566553
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.15 E-value=2.8 Score=32.92 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=21.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.++.|.|||+|.+..+|..|.+.+..
T Consensus 49 g~~~g~afV~f~~~~~a~~A~~~l~g 74 (99)
T 2div_A 49 GIPAGYCFVEFADLATAEKCLHKING 74 (99)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHTTTT
T ss_pred CCcCCEEEEEeCCHHHHHHHHHHHcC
Confidence 34568999999999999999986654
No 76
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=76.11 E-value=2.7 Score=34.71 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=27.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+.+... +.....|+.|.
T Consensus 73 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 73 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 346789999999999999998866543 22345566554
No 77
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=76.04 E-value=3.1 Score=33.78 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=26.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 54 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4457899999999999999998765432 223445544
No 78
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.03 E-value=2.7 Score=33.41 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=27.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+.++... .....|+.|-
T Consensus 52 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 52 KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 4567999999999999999998766532 2344555553
No 79
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=75.84 E-value=4.3 Score=38.51 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=45.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCCCeecCcccCchhhHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPEPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW~NL~~~~~~~~~R~~ 141 (502)
.+..|.|||+|.+..+|..|.+.+... +.....++.+|...-|+=.||.....+.-++.+
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~ 115 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEEL 115 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHH
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHH
Confidence 456789999999999999998776543 234556788888888999999877666655554
No 80
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=75.82 E-value=3.6 Score=32.60 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|. .+.... .....++.|-
T Consensus 58 g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 58 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp CCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred CccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 456899999999999999998 554332 2334555553
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.68 E-value=4.2 Score=32.18 Aligned_cols=38 Identities=24% Similarity=0.110 Sum_probs=27.3
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
...|.|||+|.+..+|..|.+.+.... .....|+.|-.
T Consensus 53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 53 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 368899999999999999988765432 23455665543
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.53 E-value=3.2 Score=33.23 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=26.4
Q ss_pred cccceEEEEeCCHHHHHHHHHHhc--cC--CCCceeeecC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLH--SE--NPMLWVTELA 118 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~--~~--~p~~~~v~~A 118 (502)
+..|.|||+|.+..+|..|.+.++ .. ......|+.|
T Consensus 50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 50 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 568999999999999999988764 22 2234556655
No 83
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.30 E-value=3.8 Score=32.85 Aligned_cols=36 Identities=19% Similarity=0.015 Sum_probs=26.3
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
+..+.|||+|.+..+|..|.+.++... .....|+.|
T Consensus 59 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 59 GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 457899999999999999998765432 234455555
No 84
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=75.30 E-value=2.6 Score=36.45 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=28.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
.+..|.|||+|.+..+|..|.+.+.... ...+.|+.|..
T Consensus 78 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 78 KTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3457899999999999999998765432 23456776643
No 85
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.21 E-value=4 Score=33.00 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=22.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.+..|.|||+|.+..+|..|.+.+...
T Consensus 63 g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 63 GTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp SCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345789999999999999999876643
No 86
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=75.11 E-value=2.1 Score=32.98 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=25.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
.++.|.|||+|.+.. |..|.+.+.... .....++.|..+
T Consensus 40 ~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 40 KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred CCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 456889999999988 888887665432 234456666433
No 87
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.54 E-value=2.1 Score=31.83 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.++.|.|||+|.+..+|..|.+...
T Consensus 39 ~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 39 KRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp SSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4557899999999999999988655
No 88
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=74.07 E-value=3.5 Score=33.15 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=26.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 65 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 65 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp SSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4457999999999999999988765432 223445544
No 89
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=73.99 E-value=3.3 Score=32.88 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=26.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPEP 121 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 121 (502)
.+.|||+|.+..+|..|.+.++.. +.....|+.|-.+
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 469999999999999998876543 2234556665433
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=73.93 E-value=3.9 Score=33.75 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=27.2
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
..+..|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 60 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 60 TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34558999999999999999998765432 233455544
No 91
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.60 E-value=3.4 Score=32.45 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=25.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC--CCCceeeecC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELA 118 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 118 (502)
.|.|||+|.+..+|+.|.+.+... +.....|+.|
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 689999999999999998876543 2234556665
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.57 E-value=2.6 Score=32.11 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=21.7
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.++.|.|||+|.+..+|..|.+.++.
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 44 NKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 44578999999999999999886654
No 93
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.16 E-value=4.3 Score=32.57 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=26.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
.|.|||+|.+..+|..|.+.++... .....|+.|-+
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 6899999999999999998765432 23445666543
No 94
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=72.90 E-value=3.2 Score=33.29 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=29.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC--CCC-ceeeecCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE--NPM-LWVTELAPEP 121 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~-~~~v~~APeP 121 (502)
.++.|.|||+|.+..+|..|.+.+... ... ...|+.|-+-
T Consensus 58 g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 58 GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp TBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 356799999999999999999876543 222 4667777543
No 95
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.80 E-value=3.4 Score=33.04 Aligned_cols=44 Identities=20% Similarity=0.084 Sum_probs=28.4
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCCC--CceeeecCCCCCCeec
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSENP--MLWVTELAPEPNDVLW 126 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~p--~~~~v~~APeP~DIiW 126 (502)
..++.|.|||+|.+..+|..|.+. ....- ....|..| .+.++.|
T Consensus 53 ~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~ 98 (104)
T 1wg5_A 53 QGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRT 98 (104)
T ss_dssp SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHH
Confidence 345689999999999999999886 32221 22345444 3455444
No 96
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.61 E-value=4.8 Score=31.00 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=25.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAP 119 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 119 (502)
.+.|||+|.+..+|..|.+.+... +...+.++.|-
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 459999999999999998876543 22345566553
No 97
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.54 E-value=3.9 Score=33.69 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=30.3
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccC----CCCceeeecCCCCCCee
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSE----NPMLWVTELAPEPNDVL 125 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~----~p~~~~v~~APeP~DIi 125 (502)
+..|.|||+|.+..+|..|.+.+... +.....|+.|-...++.
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 34689999999999999998865421 23456677776555544
No 98
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=72.31 E-value=5.5 Score=34.29 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=38.0
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC-----CCceeeecCC-------CCCCeecCcccCchhhHHHHHH
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN-----PMLWVTELAP-------EPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~-----p~~~~v~~AP-------eP~DIiW~NL~~~~~~~~~R~~ 141 (502)
+..|.|||+|.+..+|..|.+.+.... .....+..+. +..-|+=.||.....+.-++.+
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 115 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVM 115 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHH
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHH
Confidence 567899999999999999988765432 1223333221 3345777788776655555553
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=72.09 E-value=2.9 Score=32.53 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.++.|.|||+|.+..+|..|.+.++..
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 54 GKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp SCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 345789999999999999998876543
No 100
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.61 E-value=2.7 Score=32.63 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.++.|.|||+|.+..+|..|.+.++.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~g 79 (95)
T 2cqc_A 54 RRSRGFAFVYFENVDDAKEAKERANG 79 (95)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCC
Confidence 35578999999999999999987654
No 101
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.55 E-value=1.6 Score=33.66 Aligned_cols=37 Identities=19% Similarity=-0.086 Sum_probs=23.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCCCCceeeecCCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAPE 120 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~APe 120 (502)
+.|.|||+|.+..+|+.+......-+.....+..|..
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 6799999999999987543321111233445555543
No 102
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.53 E-value=3.7 Score=32.57 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=25.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
.++.|.|||+|.+..+|..|. .+.... .....|+.|-.
T Consensus 53 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 53 DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred CccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 345789999999999999988 443321 23455666543
No 103
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=71.52 E-value=3 Score=32.44 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=21.8
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
++.|.|||+|.+..+|..|.+.++..
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 55 MPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999998876543
No 104
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=71.35 E-value=5.3 Score=33.46 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=27.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 85 g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 85 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3568899999999999999998766432 234455555
No 105
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=71.10 E-value=3.4 Score=35.96 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=27.9
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
..++.|.|||+|.+..+|..|.+.++... .....++.|
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 34567999999999999999998765432 234566666
No 106
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=71.06 E-value=4.2 Score=34.89 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=23.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN 109 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~ 109 (502)
.++.|.|||+|.+..+|..|.+.++...
T Consensus 128 ~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 128 GRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 3457899999999999999999877653
No 107
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.02 E-value=4.6 Score=31.72 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=25.8
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
..|.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 46899999999999999988765432 234556655
No 108
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.74 E-value=8.2 Score=25.35 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.2
Q ss_pred ccchhhhHHHHHHHHHHhHh
Q 010742 54 KPNSFEVLSDESDSVRENIG 73 (502)
Q Consensus 54 ~vd~i~~~~~~i~~l~~~i~ 73 (502)
|.|-|.|+++++..++++|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44789999999999999886
No 109
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=70.61 E-value=3.5 Score=31.52 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=25.1
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
..++.|.|||+|.+..+|..|. .+.... .....++.|
T Consensus 44 ~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 44 SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3455889999999999999888 544322 223455555
No 110
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=70.57 E-value=4.3 Score=34.63 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN 109 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~ 109 (502)
.++.|.|||+|.+..+|..|.+.++...
T Consensus 127 g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 127 GVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 3457899999999999999999877643
No 111
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=70.41 E-value=5.9 Score=32.79 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=27.3
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
+..|.|||+|.+..+|..|.+.+.... .....|+.|-
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 567899999999999999988765432 2345566654
No 112
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=70.07 E-value=5.4 Score=31.41 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=25.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
..|.|||+|.+..+|..|.+.+.... .....++.|
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 36899999999999999998765432 234455554
No 113
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=69.97 E-value=4.1 Score=36.33 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=30.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPND 123 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~D 123 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|..+..
T Consensus 126 g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 126 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 169 (177)
T ss_dssp SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGG
T ss_pred CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 4567999999999999999988765432 23456777765443
No 114
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=69.67 E-value=5.5 Score=32.21 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=28.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
.+..|.|||+|.+..+|..|.+.++... .....++.|-.
T Consensus 44 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 44 PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3447899999999999999998776543 23456666643
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.23 E-value=3 Score=32.24 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=25.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+ +.... .....|..|
T Consensus 47 g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 47 GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4557899999999999999998 55422 223445544
No 116
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=69.07 E-value=2.2 Score=31.55 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
.++.|.|||+|.+..+|..|.+.
T Consensus 38 ~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 38 NKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SSSCCCEEEECSSSHHHHHHHTT
T ss_pred CCcCCEEEEEECCHHHHHHHHHh
Confidence 45689999999999999998874
No 117
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=69.06 E-value=3.7 Score=34.40 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.+..|.|||+|.+..+|..|.+.+..
T Consensus 102 ~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 102 EKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 45689999999999999999876653
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.95 E-value=5.6 Score=30.74 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=25.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAP 119 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 119 (502)
.+.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 459999999999999998766543 22345666653
No 119
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=68.92 E-value=2.5 Score=32.97 Aligned_cols=19 Identities=32% Similarity=0.172 Sum_probs=15.9
Q ss_pred cccceEEEEeCCHHHHHHH
Q 010742 83 KEYAVAFVYFKTRYAAIVA 101 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~ 101 (502)
.+.|.|||+|++..+|..+
T Consensus 46 ~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp SCCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHH
Confidence 3679999999999998743
No 120
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.67 E-value=4 Score=32.94 Aligned_cols=36 Identities=25% Similarity=0.115 Sum_probs=26.1
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
...|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 67 ~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 67 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 468999999999999999988765432 233455554
No 121
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=68.04 E-value=8.1 Score=36.34 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=44.5
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCCeecCcccCchhhHHHHHH
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~DIiW~NL~~~~~~~~~R~~ 141 (502)
+..|.|||+|.+..+|..|.+.+.... .....+..|....-|+=.||.....+.-++.+
T Consensus 56 ~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~ 116 (261)
T 3sde_A 56 RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQA 116 (261)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHH
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHH
Confidence 346999999999999999988665432 24567888888888888899876666555543
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.47 E-value=4.5 Score=30.59 Aligned_cols=22 Identities=50% Similarity=0.478 Sum_probs=19.6
Q ss_pred ccceEEEEeCCHHHHHHHHHHh
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVL 105 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~ 105 (502)
..|.|||+|.+..+|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 4689999999999999998866
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.39 E-value=3.9 Score=32.90 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhcc
Q 010742 86 AVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 86 ~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
|.|||+|.+..+|+.|.+.+..
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g 72 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDN 72 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSS
T ss_pred CEEEEEECCHHHHHHHHHHHCc
Confidence 9999999999999999987654
No 124
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=67.34 E-value=4 Score=32.50 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=22.8
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
..+..|.|||+|.+..+|..|.+.++..
T Consensus 66 ~g~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 66 SGRSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3356889999999999999998876543
No 125
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=67.19 E-value=6.2 Score=31.82 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=25.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 6899999999999999988765432 234456555
No 126
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.71 E-value=6.2 Score=31.81 Aligned_cols=36 Identities=11% Similarity=-0.098 Sum_probs=25.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccC----CCCceeeecCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSE----NPMLWVTELAP 119 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~----~p~~~~v~~AP 119 (502)
..|.|||+|.+..+|..|.+.+... +.....++.|-
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3689999999999999998865422 22345566654
No 127
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.33 E-value=6.4 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.+..|.|||+|.+..+|..|.+.+..
T Consensus 53 g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 53 GKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 34578999999999999999886654
No 128
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=66.06 E-value=5.4 Score=32.16 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=20.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhcc
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
..|.|||.|.+..+|..|.+.+..
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHhcC
Confidence 468999999999999999887654
No 129
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=65.97 E-value=6 Score=33.37 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=26.7
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4567899999999999999988665432 234455554
No 130
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=65.93 E-value=6.2 Score=33.09 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=26.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.+.... .....|+.|
T Consensus 81 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 81 RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3457899999999999999988765432 234556554
No 131
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.69 E-value=5.2 Score=32.28 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=26.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC----CCCceeeecCCCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE----NPMLWVTELAPEP 121 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~----~p~~~~v~~APeP 121 (502)
.|.|||+|.+..+|..|.+.+... ......|+.|-..
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 478999999999999998866532 2234566666543
No 132
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=65.66 E-value=6.1 Score=34.02 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=22.7
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.++.|.|||+|.+..+|..|.+.++..
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 133 GLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 345788999999999999999887754
No 133
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=65.45 E-value=8.5 Score=32.76 Aligned_cols=38 Identities=24% Similarity=0.133 Sum_probs=28.2
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEP 121 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP 121 (502)
+.|.|||+|.+..+|..|.+.++... .....|+.|-++
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 57999999999999999998766532 234566666443
No 134
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=65.34 E-value=16 Score=31.51 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=37.8
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCC--------CCCeecCcccCchhhHHHHHH
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELAPE--------PNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe--------P~DIiW~NL~~~~~~~~~R~~ 141 (502)
..+..|.|||+|.+..+|..|.+ +... ....+.+..|.. ..-|+=.||.....+.-++.+
T Consensus 50 ~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 119 (175)
T 1fje_B 50 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEV 119 (175)
T ss_dssp EETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHH
T ss_pred CCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHH
Confidence 34567999999999999999986 4322 122345555442 234666777765555555543
No 135
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=65.18 E-value=13 Score=31.46 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=35.0
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC--------CCCeecCcccCchhhHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE--------PNDVLWSNLCIPYRQLWFRK 140 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe--------P~DIiW~NL~~~~~~~~~R~ 140 (502)
.+..|.|||+|.+..+|..|.+.+.... .....+..|.. ..-+.=.||.....+.-++.
T Consensus 38 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 106 (166)
T 3md3_A 38 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRN 106 (166)
T ss_dssp -CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHH
Confidence 3457899999999999999987665432 12234444322 22355556665544444443
No 136
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.41 E-value=11 Score=31.53 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=29.2
Q ss_pred cc-eEEEEeCCHHHHHHHHHHhccCCC----CceeeecCCCCC
Q 010742 85 YA-VAFVYFKTRYAAIVAAEVLHSENP----MLWVTELAPEPN 122 (502)
Q Consensus 85 ~~-~AFVtF~s~~~A~~~~q~~~~~~p----~~~~v~~APeP~ 122 (502)
.| .|||+|.+..+|..|.+.+....- ..+.|+.|-.++
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 38 599999999999999998876543 256788775444
No 137
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=64.33 E-value=4.4 Score=33.66 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=26.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
.|.|||+|.+..+|..|.+.+.... .....++.+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 4889999999999999999887643 22345566553
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=64.16 E-value=5.9 Score=33.69 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=22.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.++.|.|||+|.+..+|..|.+.++..
T Consensus 126 ~~~~g~afV~f~~~~~A~~A~~~l~g~ 152 (166)
T 3md3_A 126 GSSRGYGFVSFTSQDDAQNAMDSMQGQ 152 (166)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCC
Confidence 455789999999999999999877654
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=64.02 E-value=5.6 Score=31.30 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.4
Q ss_pred cccceEEEEeCCHHHHHHHHHHhcc
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
+..|.|||+|.+..+|..|...+..
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g 85 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALAN 85 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCC
Confidence 4579999999999999999887654
No 140
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=63.89 E-value=5.3 Score=32.60 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC
Q 010742 86 AVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 86 ~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
|.|||+|.+..+|..|.+.+...
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 99999999999999999876643
No 141
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=63.57 E-value=5.2 Score=32.10 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=20.6
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.++.|.|||+|.+..+|..|.+ +.
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~-~~ 75 (107)
T 2lmi_A 52 GKRRGDALIEMESEQDVQKALE-KH 75 (107)
T ss_dssp STTCSEEEEEBSSHHHHHHHHT-TT
T ss_pred CCEeeEEEEEECCHHHHHHHHH-hC
Confidence 4568899999999999999988 44
No 142
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=63.27 E-value=5.4 Score=33.85 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=27.0
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCC----CceeeecCCCC
Q 010742 87 VAFVYFKTRYAAIVAAEVLHSENP----MLWVTELAPEP 121 (502)
Q Consensus 87 ~AFVtF~s~~~A~~~~q~~~~~~p----~~~~v~~APeP 121 (502)
.|||+|.+..+|..|.+.+...+- ..++++.|-.+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 499999999999999998876542 34567777543
No 143
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=63.02 E-value=6.8 Score=33.63 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=26.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+.++... .....|+.|
T Consensus 109 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 109 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp TTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568899999999999999998765432 234455554
No 144
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=62.82 E-value=4.6 Score=32.82 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=21.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.+..|.|||+|.+..+|..|.+.++.
T Consensus 79 g~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 79 SLSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp SCCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHcCC
Confidence 35578999999999999999887654
No 145
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.47 E-value=7.2 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=24.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC----CCCceeeecCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE----NPMLWVTELAP 119 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~----~p~~~~v~~AP 119 (502)
.|.|||+|.+..+|..|.+.+... +.....|+.|-
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 589999999999999998865421 22344555553
No 146
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.47 E-value=5.7 Score=32.86 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.7
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
..|.|||+|.+..+|..|.+.++..
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3589999999999999999887764
No 147
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=62.31 E-value=4.1 Score=31.07 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
.++.|.|||+|.+..+|..|.+.
T Consensus 50 g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 50 GRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CCEEEEEEEEESSTHHHHHHHHS
T ss_pred CccccEEEEEECCHHHHHHHHHh
Confidence 45578999999999999988864
No 148
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=61.89 E-value=4.5 Score=33.80 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.+..|.|||+|.+. +|..|.+.+...
T Consensus 64 g~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 64 QLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp SSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 45679999999999 999998887765
No 149
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=61.81 E-value=8.3 Score=31.56 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=25.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.++.|.|||+|.+..+|..|. .+.... .....|+.|-
T Consensus 75 ~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 75 GHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp SSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 455889999999999999888 443321 2344566653
No 150
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.69 E-value=5.1 Score=32.18 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=19.5
Q ss_pred ccccceEEEEeCCHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAE 103 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q 103 (502)
.++.|.|||+|.+..+|..|..
T Consensus 49 g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 49 KAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp TSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCccEEEEEECCHHHHHHHHH
Confidence 4568999999999999999887
No 151
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=61.40 E-value=18 Score=33.07 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=19.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcc
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.|.|||+|.+..+|..|.+.+..
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g 94 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNG 94 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHhCC
Confidence 68999999999999999876543
No 152
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=61.31 E-value=6.7 Score=30.99 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=27.2
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
+.|.|||+|.++.+|..|.+.+...+ ....+|+.|
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 68999999999999999998876432 234566666
No 153
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.93 E-value=5.6 Score=31.90 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=24.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC----CCCceeeecCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE----NPMLWVTELAP 119 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~----~p~~~~v~~AP 119 (502)
.|.|||+|.+..+|..|.+.+... +.....|+.|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 689999999999999998765321 22344566654
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=60.78 E-value=19 Score=32.12 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=22.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.+..|.|||+|.+..+|..|.+.+...
T Consensus 67 g~~~g~afV~f~~~~~A~~A~~~l~~~ 93 (216)
T 2qfj_A 67 MKHKGFAFVEYEVPEAAQLALEQMNSV 93 (216)
T ss_dssp -CCCSEEEEEESSHHHHHHHHHHHSSC
T ss_pred CccCceEEEEeCCHHHHHHHHHHccCC
Confidence 446899999999999999999876543
No 155
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=60.58 E-value=6.1 Score=29.93 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=19.2
Q ss_pred ccceEEEEeCCHHHHHHHHHHhcc
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
..|.|||+|.+..+|..|. .+..
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 4799999999999999888 5543
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.54 E-value=7.4 Score=30.18 Aligned_cols=35 Identities=9% Similarity=-0.112 Sum_probs=24.3
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCC
Q 010742 87 VAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPN 122 (502)
Q Consensus 87 ~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~ 122 (502)
.|||+|.+..+|..|.+ +.... .....|+.|.+..
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 99999999999999988 54432 2234566665443
No 157
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.39 E-value=4.9 Score=32.58 Aligned_cols=37 Identities=24% Similarity=0.084 Sum_probs=26.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC-CCCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE-NPMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~-~p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.+... +.....|+.|
T Consensus 56 ~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 56 GKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp CCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 456789999999999999998765431 1223456665
No 158
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.30 E-value=5.9 Score=32.26 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.2
Q ss_pred ccccceEEEEeCCHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAE 103 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q 103 (502)
.++.|.|||+|.+..+|..|.+
T Consensus 53 g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 53 GRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp CCCCSEEEEECSSHHHHHHHHH
T ss_pred CCCCeEEEEEECCHHHHHHHHh
Confidence 4568999999999999999884
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=59.89 E-value=9.5 Score=34.13 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=26.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCC--CceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENP--MLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p--~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+.++...- ....|+.|
T Consensus 164 g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 164 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34578999999999999999987765422 23445544
No 160
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.88 E-value=5.6 Score=31.56 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.2
Q ss_pred cccceEEEEeCCHHHHHHHHHH
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
+..|.|||+|.+..+|..|.+.
T Consensus 56 ~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 56 QSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CEEEEEEEEESSTTHHHHHHHH
T ss_pred CcceEEEEEECCHHHHHHHHHh
Confidence 4568999999999999998876
No 161
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.60 E-value=4.9 Score=32.66 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=19.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
.++.|.|||+|.+..+|..|.+.
T Consensus 54 g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 54 GQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp SSCSSCEEEECSSHHHHHHHGGG
T ss_pred CCcceEEEEEECCHHHHHHHHHh
Confidence 45689999999999999998765
No 162
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=59.16 E-value=7.9 Score=33.62 Aligned_cols=38 Identities=13% Similarity=-0.067 Sum_probs=27.1
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
..+..|.|||+|.+..+|..|.+.+.... .....|..|
T Consensus 95 tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 95 NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 34557899999999999999998766432 223445555
No 163
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.03 E-value=7.6 Score=32.29 Aligned_cols=35 Identities=17% Similarity=0.046 Sum_probs=24.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcc----CCCCceeeecCC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHS----ENPMLWVTELAP 119 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~----~~p~~~~v~~AP 119 (502)
.|.|||+|.+..+|..|.+.+.. -......|+.|-
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 58999999999999998876542 122345566553
No 164
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=58.61 E-value=6.8 Score=31.55 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=25.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC-CCCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE-NPMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~-~p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+..... +.....++.|
T Consensus 64 g~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 64 KRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp CCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 456789999999999999998754211 1233455554
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=58.07 E-value=14 Score=32.66 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=28.3
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCCC----CceeeecCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSENP----MLWVTELAP 119 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~p----~~~~v~~AP 119 (502)
+..|.|||+|.+..+|..|.+.+....- ...+|+.|=
T Consensus 82 ~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 82 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3467899999999999999998776543 346677664
No 166
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=57.33 E-value=6.6 Score=33.76 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=22.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.++.|.|||+|.+..+|..|.+.++..
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 133 GLSKGYAFCEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp CSEEEEEEEEESSTTHHHHHHHHHTTC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCC
Confidence 345789999999999999998876653
No 167
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=57.24 E-value=11 Score=35.39 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.9
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN 109 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~ 109 (502)
..|.|||+|.++.+|..|.+.+....
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 46999999999999999988766543
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=56.85 E-value=5.4 Score=34.15 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=36.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCCCceeeecCC------CCCCeecCcccCchhhHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENPMLWVTELAP------EPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~AP------eP~DIiW~NL~~~~~~~~~R~~ 141 (502)
.++.|.|||+|.+..+|..|.+..+.-+.....+..|. .+.-|+=.||.....+.-++.+
T Consensus 42 g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~ 107 (167)
T 2cjk_A 42 GRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEF 107 (167)
T ss_dssp SSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHH
T ss_pred CCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHH
Confidence 45679999999999999998874221122223333332 2334666677665555555543
No 169
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=56.74 E-value=17 Score=32.10 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=19.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcc
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.|.|||+|.+..+|..|.+.++.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~ 63 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNG 63 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHhCC
Confidence 68999999999999999886543
No 170
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.49 E-value=5.2 Score=32.82 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.5
Q ss_pred ccccceEEEEeCCHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAE 103 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q 103 (502)
.++.|.|||+|.+..+|..|.+
T Consensus 58 g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 58 GRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp SCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCCeEEEEEECCHHHHHHHHh
Confidence 4568899999999999999988
No 171
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.36 E-value=4.4 Score=32.39 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=19.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
.++.|.|||+|.+..+|+.|.+.
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 52 GRVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp SCEEEEEEEECSSSHHHHHHHTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHh
Confidence 45678999999999999999863
No 172
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.20 E-value=6.9 Score=31.69 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
.+..|.|||+|.+..+|..|.+.
T Consensus 66 g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 66 KRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp SSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCcCceEEEEeCCHHHHHHHHHh
Confidence 44578999999999999998875
No 173
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=56.17 E-value=7.2 Score=32.94 Aligned_cols=37 Identities=19% Similarity=0.065 Sum_probs=26.7
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+..|.|||+|.+..+|..|.+.++... .....|+.|
T Consensus 89 g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 89 GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4567999999999999999988765432 223455554
No 174
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.43 E-value=5.5 Score=33.27 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=19.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
.++.|.|||+|.+..+|..|.+.
T Consensus 65 gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 65 GRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp SCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHh
Confidence 45689999999999999998874
No 175
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=53.98 E-value=6.4 Score=33.51 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=20.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.++.|.|||+|.+..+|..|.+ +.
T Consensus 85 g~srG~aFV~F~~~e~a~~Al~-~~ 108 (136)
T 2hgl_A 85 GRQSGEAFVELGSEDDVKMALK-KD 108 (136)
T ss_dssp SCEEEEEEEECSSHHHHHHHHT-TT
T ss_pred CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 4568899999999999999988 44
No 176
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.92 E-value=5.6 Score=32.81 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=20.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.++.|.|||+|.+..+|..|.+ +..
T Consensus 64 g~~~G~afV~F~~~~~a~~Al~-~~g 88 (124)
T 1wel_A 64 GKATGEGFVEFRNEADYKAALC-RHK 88 (124)
T ss_dssp SSEEEEEEEEBSSSHHHHHHHT-SCS
T ss_pred CCCCeEEEEEECCHHHHHHHHH-hCC
Confidence 4557899999999999999988 543
No 177
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=53.80 E-value=5.9 Score=33.28 Aligned_cols=23 Identities=30% Similarity=0.145 Sum_probs=20.0
Q ss_pred ccccceEEEEeCCHHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
.++.|.|||+|.+..+|..|.+.
T Consensus 81 GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 81 GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCceEEEEEECCHHHHHHHHHH
Confidence 45689999999999999998874
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=53.49 E-value=22 Score=32.11 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=20.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhcc
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
..|.|||+|.+..+|+.|.+.+..
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng 64 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNN 64 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCC
Confidence 358999999999999999886643
No 179
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=53.42 E-value=24 Score=30.05 Aligned_cols=58 Identities=9% Similarity=0.028 Sum_probs=35.4
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC------CCCCeecCcccCchhhHHHHHH
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP------EPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP------eP~DIiW~NL~~~~~~~~~R~~ 141 (502)
+..|.|||+|.+..+|..|. .+.... .....+..+. .+.-|.=.||.....+..++.+
T Consensus 49 ~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 114 (172)
T 2g4b_A 49 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKEL 114 (172)
T ss_dssp TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHH
Confidence 45799999999999999988 333221 1223343332 2355666777765555555543
No 180
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=53.13 E-value=21 Score=32.22 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=37.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCCC--CceeeecCC--------CCCCeecCcccCchhhHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSENP--MLWVTELAP--------EPNDVLWSNLCIPYRQLWFRKI 141 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~p--~~~~v~~AP--------eP~DIiW~NL~~~~~~~~~R~~ 141 (502)
.+..|.|||+|.+..+|..|.+.+....- ....+..+. ...-|+=.||.....+.-++.+
T Consensus 54 g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 123 (213)
T 4f02_A 54 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 123 (213)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHH
T ss_pred CCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHH
Confidence 45678999999999999999887654321 122333333 2234666777766555555543
No 181
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.95 E-value=14 Score=29.98 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=16.2
Q ss_pred CcCc-ccc-cc------chhhhHHHHHHHHHHhHhhh
Q 010742 47 LLPC-LCG-KP------NSFEVLSDESDSVRENIGFD 75 (502)
Q Consensus 47 ~~~~-~~g-~v------d~i~~~~~~i~~l~~~i~~~ 75 (502)
++.| .|| .. +.++.++++++++++++...
T Consensus 47 g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l 83 (112)
T 1l8d_A 47 KGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKL 83 (112)
T ss_dssp SEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456 777 32 33566666666666655443
No 182
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.63 E-value=8.6 Score=30.96 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.+..|.|||+|.+..+|..|. .+.
T Consensus 64 g~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 64 RRSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp SSCCCCEEEEESCGGGHHHHH-HHT
T ss_pred CccCcEEEEEeCcHHHHHHHH-HcC
Confidence 356789999999999999888 544
No 183
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=49.27 E-value=12 Score=32.59 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.5
Q ss_pred cccceEEEEeCCHHHHHHHHHHhcc
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
+..|.|||+|.+..+|..|.+.+..
T Consensus 112 ~~~g~afV~f~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 112 FSKGYALVEYETHKQALAAKEALNG 136 (165)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEeeEEEEEECCHHHHHHHHHHhCC
Confidence 4578999999999999999987654
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=47.52 E-value=16 Score=34.44 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=29.8
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPN 122 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~ 122 (502)
.++.|.|||+|.+..+|..|.+.+.... .....+..|....
T Consensus 223 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 223 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 3457899999999999999998776543 2345677765443
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=47.01 E-value=12 Score=31.85 Aligned_cols=36 Identities=11% Similarity=-0.026 Sum_probs=25.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC--CCCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+ +... +.....|..|
T Consensus 126 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 126 GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 4567899999999999999987 3221 2234556665
No 186
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=46.35 E-value=15 Score=33.11 Aligned_cols=36 Identities=22% Similarity=0.037 Sum_probs=26.4
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCCC--CceeeecC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSENP--MLWVTELA 118 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~p--~~~~v~~A 118 (502)
...|.|||+|.+..+|..|.+.++...- ....|..|
T Consensus 141 ~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 141 GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3578999999999999999987765322 23455555
No 187
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=45.29 E-value=15 Score=32.34 Aligned_cols=37 Identities=14% Similarity=-0.018 Sum_probs=26.9
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.++.|.|||+|.+..+|..|.+.++... .....++.|
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3457899999999999999988766432 234556655
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=45.24 E-value=25 Score=30.73 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=34.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC-CCCceeeecCC------------CCCCeecCcccCchhhHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE-NPMLWVTELAP------------EPNDVLWSNLCIPYRQLWFRK 140 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~-~p~~~~v~~AP------------eP~DIiW~NL~~~~~~~~~R~ 140 (502)
.++.|.|||+|.+..+|..|.+..... +.....+..|. .+.-|+=.||.....+..++.
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~ 123 (196)
T 1l3k_A 52 KRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHH
T ss_pred CCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHH
Confidence 345789999999999999998752110 11122333332 224466677766555555554
No 189
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=44.37 E-value=24 Score=30.85 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=18.8
Q ss_pred ccccceEEEEeCCHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAE 103 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q 103 (502)
.+..|.|||+|.+..+|..|.+
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al~ 69 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAMA 69 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHGG
T ss_pred cCCCCEEEEEeCCHHHHHHHHH
Confidence 3457999999999999999883
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=44.28 E-value=18 Score=33.77 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.5
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLH 106 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~ 106 (502)
.++.|.|||+|.+..+|..|.+.+.
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~ 158 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCG 158 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhc
Confidence 3457899999999999999998774
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=44.14 E-value=20 Score=31.53 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.8
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
..|.|||+|.+..+|..|.+.++..
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~ 181 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNH 181 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSS
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 4689999999999999999877654
No 192
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=49.64 E-value=4.9 Score=32.65 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=21.3
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhcc
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
.+..|.|||+|.+..+|..|.+.+..
T Consensus 54 g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 54 GKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 35578999999999999998876543
No 193
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=43.63 E-value=4.9 Score=31.68 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.0
Q ss_pred ccccceEEEEeCCHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAE 103 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q 103 (502)
.+..|.|||+|.+..+|..|.+
T Consensus 47 g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 47 GVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp SCEEEEEEEEESSCCCHHHHTT
T ss_pred CCccceEEEEECCHHHHHHHHh
Confidence 3457999999999999998877
No 194
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=43.09 E-value=39 Score=28.62 Aligned_cols=61 Identities=8% Similarity=-0.103 Sum_probs=38.2
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccC--CCCce-------------------eeecCCCCCCeecCcccCchhhHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSE--NPMLW-------------------VTELAPEPNDVLWSNLCIPYRQLWFRK 140 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~-------------------~v~~APeP~DIiW~NL~~~~~~~~~R~ 140 (502)
.+..|.|||+|.+..+|..+.+..... ....| .....+...-|+-.||.....+.-++.
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 356899999999999999887654311 00111 111223456677888887766666665
Q ss_pred HH
Q 010742 141 IA 142 (502)
Q Consensus 141 ~~ 142 (502)
++
T Consensus 90 ~F 91 (158)
T 2kn4_A 90 VF 91 (158)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=42.97 E-value=24 Score=33.10 Aligned_cols=43 Identities=26% Similarity=0.136 Sum_probs=30.8
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPND 123 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~D 123 (502)
..+..|.|||+|.+..+|..|.+.++... ...+.++.|-...|
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 48 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 34567999999999999999998766532 23456777654444
No 196
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=41.82 E-value=14 Score=34.19 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=27.0
Q ss_pred ccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
.+..|.|||+|.+..+|..|.+.+.... -....|..|-
T Consensus 109 g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 109 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 3457899999999999999988665432 2345566553
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=41.10 E-value=29 Score=31.66 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=26.4
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCCC---CceeeecCC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSENP---MLWVTELAP 119 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~p---~~~~v~~AP 119 (502)
..|.|||+|.+..+|..|.+.+....- ....+..|-
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 468999999999999999987765432 344555553
No 198
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=40.33 E-value=16 Score=32.87 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=20.1
Q ss_pred ccccceEEEEeCCHHHHHHHHHHh
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEVL 105 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~~ 105 (502)
.++.|.|||+|.+..+|..|.+..
T Consensus 147 ~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 147 KAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHCT
T ss_pred CCcccEEEEEECCHHHHHHHHHhC
Confidence 446799999999999999988643
No 199
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=40.13 E-value=24 Score=33.18 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhccC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
.|.|||+|.+..+|..|.+.++..
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCc
Confidence 489999999999999999877653
No 200
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=38.61 E-value=12 Score=31.88 Aligned_cols=22 Identities=27% Similarity=0.151 Sum_probs=19.0
Q ss_pred ccccceEEEEeCCHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAE 103 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q 103 (502)
.++.|.|||+|.+..+|..|.+
T Consensus 83 g~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 83 GRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp SCSSCCCEEECSHHHHHHHHTT
T ss_pred CCCceEEEEEeCCHHHHHHHHh
Confidence 4568899999999999998873
No 201
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=36.32 E-value=29 Score=31.44 Aligned_cols=37 Identities=19% Similarity=0.075 Sum_probs=28.2
Q ss_pred cccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAP 119 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~AP 119 (502)
+..|.+||.|.+..+|..|.+.+.... .....+..+|
T Consensus 173 ~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 173 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 456899999999999999999887643 2344566665
No 202
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=36.14 E-value=20 Score=31.28 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=19.4
Q ss_pred ccccceEEEEeCCHHHHHHHHHH
Q 010742 82 EKEYAVAFVYFKTRYAAIVAAEV 104 (502)
Q Consensus 82 ~~~~~~AFVtF~s~~~A~~~~q~ 104 (502)
.++.|.|||+|.+..+|..|.+.
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHC
T ss_pred CCccceEEEEECCHHHHHHHHHh
Confidence 44678999999999999988864
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=35.92 E-value=25 Score=31.78 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=21.6
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
..|.|||.|.+..+|..|.+.++..
T Consensus 164 ~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 164 RSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCC
Confidence 4589999999999999999887653
No 204
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=34.54 E-value=21 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 010742 344 SVMAPLILPLLLIYFVLA 361 (502)
Q Consensus 344 s~i~Plilpf~~~yF~l~ 361 (502)
+.+.|+++.++.+||.+.
T Consensus 4 ~~~l~~v~~~~ifYFl~i 21 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356788888888888763
No 205
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=34.22 E-value=34 Score=34.95 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=28.8
Q ss_pred hccccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 010742 81 SEKEYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPE 120 (502)
Q Consensus 81 ~~~~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APe 120 (502)
..++.|.|||+|.+..+|..|.+.+.... .....|..|-.
T Consensus 140 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 140 SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 34568899999999999999998766542 23455666643
No 206
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=33.38 E-value=1.2e+02 Score=21.17 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHhH
Q 010742 59 EVLSDESDSVRENI 72 (502)
Q Consensus 59 ~~~~~~i~~l~~~i 72 (502)
+.+.++-+++.++|
T Consensus 28 eelkkkweelkkki 41 (67)
T 1lq7_A 28 EELKKKWEELKKKI 41 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 207
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.71 E-value=1.3e+02 Score=22.55 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhh
Q 010742 58 FEVLSDESDSVRENIGFDISDLA 80 (502)
Q Consensus 58 i~~~~~~i~~l~~~i~~~~~~~~ 80 (502)
|+.+++++.+.+++|+..+.+.+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666655443
No 208
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=30.94 E-value=31 Score=34.14 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccC
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSE 108 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~ 108 (502)
..|.|||+|.+..+|+.|.+.+...
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 4599999999999999999877653
No 209
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.82 E-value=89 Score=25.01 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhc
Q 010742 19 TVRKLMNDAENMCQLVKNFSTE 40 (502)
Q Consensus 19 ~l~~L~~~~~~~~~~l~~~~~~ 40 (502)
++..|..+++++.++++.++.+
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655543
No 210
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=30.78 E-value=49 Score=31.04 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=38.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCCeecCcccCchhhHHHHHHH
Q 010742 84 EYAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELAPEPNDVLWSNLCIPYRQLWFRKIA 142 (502)
Q Consensus 84 ~~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~DIiW~NL~~~~~~~~~R~~~ 142 (502)
..|.|||+|.+..+|..|.+ +.... .....+..++ ..-|+=.||.....+..++.++
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~-~~~l~v~nlp~~~t~~~l~~~f 138 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT-ECTLWMTNFPPSYTQRNIRDLL 138 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-SCEEEEECCCTTCCHHHHHHHH
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-CCEEEEECCCCCCCHHHHHHHH
Confidence 46999999999999999985 32221 1234555554 5667778887766666555543
No 211
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=27.68 E-value=54 Score=30.76 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=20.4
Q ss_pred cccceEEEEeCCHHHHHHHHHHhcc
Q 010742 83 KEYAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 83 ~~~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
++.|.|||+|.+..+|..|.+.+..
T Consensus 157 ~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 157 TSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp --CCEEEEECSSHHHHHHHHHHHTT
T ss_pred CcceEEEEEECCHHHHHHHHHHhCC
Confidence 4689999999999999999886654
No 212
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.92 E-value=55 Score=25.75 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=21.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhccCC--CCceeeecC
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHSEN--PMLWVTELA 118 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~A 118 (502)
.+.+||||++..+|..|.+ +...+ ....+|++|
T Consensus 49 ~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred cCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 3459999999999988887 44332 223445544
No 213
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.36 E-value=1.4e+02 Score=24.48 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccCCCCCcCccccccchhhhHHHHHHHHHHhHhhh
Q 010742 19 TVRKLMNDAENMCQLVKNFSTEEKSKLSLLPCLCGKPNSFEVLSDESDSVRENIGFD 75 (502)
Q Consensus 19 ~l~~L~~~~~~~~~~l~~~~~~~~~~p~~~~~~~g~vd~i~~~~~~i~~l~~~i~~~ 75 (502)
+++.|.++.++..+++.-++. -|..+-+..+++|++.++++|+..
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~------------rgd~~~i~qf~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSL------------VEAADKYAELEKEKATLEAEIARL 55 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT------------TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777665542 133455777777888887777543
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.27 E-value=79 Score=25.50 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=28.1
Q ss_pred ceEEEEeCCHHHHHHHHHH-hccCCCCceeeecCC--CCCCeecCccc
Q 010742 86 AVAFVYFKTRYAAIVAAEV-LHSENPMLWVTELAP--EPNDVLWSNLC 130 (502)
Q Consensus 86 ~~AFVtF~s~~~A~~~~q~-~~~~~p~~~~v~~AP--eP~DIiW~NL~ 130 (502)
+.|.|||.+...|+.+.+. .+.-+.....|.+.| +|+-+.-++|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 8999999999988877664 333333445555443 34444444443
No 215
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.23 E-value=72 Score=18.38 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 010742 21 RKLMNDAENMCQ 32 (502)
Q Consensus 21 ~~L~~~~~~~~~ 32 (502)
..|.++..++.+
T Consensus 11 edlqerlrklrk 22 (27)
T 3twe_A 11 EDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 216
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.08 E-value=73 Score=31.69 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh--cccCCCCCcCcc--cc-ccchhhhHHHHHHHHHH
Q 010742 20 VRKLMNDAENMCQLVKNFST--EEKSKLSLLPCL--CG-KPNSFEVLSDESDSVRE 70 (502)
Q Consensus 20 l~~L~~~~~~~~~~l~~~~~--~~~~~p~~~~~~--~g-~vd~i~~~~~~i~~l~~ 70 (502)
|..|....++...+.++++. .+..+||..-|- .. +||- +.|+++.++|+.
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~-e~ye~qqKQL~q 190 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDL-EDYKNQQKQLEQ 190 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccH-HHHHHHHHHHHh
Confidence 33333334444444444443 235778877662 22 5553 556666565554
No 217
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.00 E-value=90 Score=24.74 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=17.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcc
Q 010742 85 YAVAFVYFKTRYAAIVAAEVLHS 107 (502)
Q Consensus 85 ~~~AFVtF~s~~~A~~~~q~~~~ 107 (502)
...+||||++..+|..|.+ +..
T Consensus 58 ~d~~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH-GGG
T ss_pred cCcEEEEEcChHHHHHHHh-cCC
Confidence 3449999999999988887 443
Done!