BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010743
(502 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/450 (54%), Positives = 319/450 (70%), Gaps = 16/450 (3%)
Query: 1 MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSS 60
M+ KL T EKK LV++VKL+QKR +EG GGWK+FL YDKK GSSLSDPARRS D L +
Sbjct: 1 MEHKLATAEKKLLVDLVKLVQKRGLEGENGGWKEFLNVYDKKLGSSLSDPARRSNDVLVA 60
Query: 61 FLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMF 120
FL TF K++DL+ IA+V+Q NR+L+E+ K+ +PD E+PEQRLVRLT+ H YP Y F
Sbjct: 61 FLLTFKKKEDLQLIARVMQCGANRELIEKFKQETPDKETPEQRLVRLTITHDDYPGNYTF 120
Query: 121 PSSDEGWLVTKLG-KSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV 179
PS E W VT+LG K SK + S M ++DCEMV CEDGS+ LVR+ VDR+LKV +D+ V
Sbjct: 121 PSYAEDWYVTELGKKKSKVIKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFV 180
Query: 180 KPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD 239
KP+K V DY+++ITG+TA+DL T S+A+IQK++++ LS GTILVGH L+NDL+VL++D
Sbjct: 181 KPDKPVIDYKTDITGVTAEDLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRID 240
Query: 240 HPRVIDTSLIFKYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII 297
H RVIDTS +F++VD + +RPSL NLCKSVLG E+R G HNC+ DA+AAMKLVLA +
Sbjct: 241 HARVIDTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAV 300
Query: 298 ERRVDNAV-PLLQEDVAETER---------ARLFLHRIPTKVPSEELHGVIPGDFTIEAK 347
E+ + P + VAE R A+LFLH+IP VPSEELHGV+ G+FT+ K
Sbjct: 301 EKGAATLIQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTLVVK 360
Query: 348 AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVR 407
K G A FSSP+EAN+AFENV+G+ +KD G PQK + ++G+ SL+VR
Sbjct: 361 PPK--TGGYSTAVVDFSSPEEANEAFENVEGDVAKDKSGLPQKKAVLKLSSGLAVSLFVR 418
Query: 408 KMVCDEPSNQIVVKKRTFEGEENAGVSKKH 437
KMV D+ +I +R EEN SK+
Sbjct: 419 KMVQDDSPCEISTSERA-RAEENNVSSKRQ 447
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 110/189 (58%), Gaps = 13/189 (6%)
Query: 314 ETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAF 373
E ++ +L LH+IP VPS+EL VI G FT+E KR +G Y A F+SP+EAN+AF
Sbjct: 604 EADKTKLLLHKIPLNVPSQELKVVITGQFTLEVMPPKR-KGRYYNAVVTFNSPEEANKAF 662
Query: 374 ENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGV 433
E VKG K+ G QK+V F+ ++G A LYVRKMV DE E NA
Sbjct: 663 EKVKGEAVKEKGGLAQKMVAFKLSSGSGACLYVRKMVQDESEET---------KEANANH 713
Query: 434 SKKHNIKWINE-EEKI-ADTNQCKCEDHLKVIERLKRELREKDFQISMQDKNISDLKKKV 491
+ ++K + E +EK+ A CE H K IE LK++L K+ QI QDK I++LK K+
Sbjct: 714 CEDDHLKEMEELKEKLKAMEFAISCEGHSKEIEELKQKLNAKEHQIQAQDKIIANLKMKL 773
Query: 492 AEMKDQKSR 500
E K KSR
Sbjct: 774 -EKKQSKSR 781
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 2/140 (1%)
Query: 314 ETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAF 373
E ++ +LFLH+IP VPS+ELHGV+ GDFT++ K KR +G Y A F+SP+EAN+AF
Sbjct: 465 EADKTKLFLHKIPHDVPSQELHGVLNGDFTLDVKPPKR-KGGYYNAVVDFNSPEEANEAF 523
Query: 374 ENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGV 433
ENV+G+ KD G PQK+V F+ ++G SLYVRKMV D+ +I KR E N
Sbjct: 524 ENVEGDVVKDKTGLPQKMVVFKLSSGSGVSLYVRKMVHDDSPGEISTTKRARTEESNMS- 582
Query: 434 SKKHNIKWINEEEKIADTNQ 453
SK+ + +EE K A+ Q
Sbjct: 583 SKRQKTEDESEETKEANAKQ 602
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/416 (54%), Positives = 299/416 (71%), Gaps = 10/416 (2%)
Query: 1 MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSSLSDPARRSKDALSS 60
M+ KL T EK+ L E+VKL+Q R + G G WK+FL YDK S SDP+RRS + L
Sbjct: 1 MELKLATAEKQVLDELVKLLQSRDLRGENGNWKEFLHVYDKN-ADSPSDPSRRSHEDLVQ 59
Query: 61 FLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMF 120
FL TF K++DL+ + + H N L+E LK+ S D+++PEQ LVRLT++HP Y L Y F
Sbjct: 60 FLTTFKKKEDLQLL----KCHANHLLIENLKQESQDEDTPEQMLVRLTVEHPSYSLDYSF 115
Query: 121 PSSDEGWLVTKLG-KSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV 179
E W V+ +G K K M S M AVDCEMVLCEDG+EGLVR+ VVDR+LKV +DE V
Sbjct: 116 KPYSEDWFVSDVGMKMKKVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFV 175
Query: 180 KPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD 239
KP K V DYR++ITG+TA+D+ + S+ +IQ+ ++ LS GTILVGHSLN DLEVLK+D
Sbjct: 176 KPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKID 235
Query: 240 HPRVIDTSLIFKYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII 297
HP+VIDT+L+FKY + + RRPSL NLCKS+LGYE+RK G PH+C+ DASAAMKL LA++
Sbjct: 236 HPKVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVV 295
Query: 298 ERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNY 357
E+RVD + +E + E E+A+LFLH+IP VPSEEL V+ G FT++ K K +G Y
Sbjct: 296 EKRVDTTIKPSKE-MLEVEKAKLFLHKIPNNVPSEELEQVLSGKFTLDVKQAK-TQGRYY 353
Query: 358 AAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDE 413
AFA+F S ++A+QAFE++ G + DS G PQK+V + ++G AS+YVRKMV DE
Sbjct: 354 CAFALFHSSEDADQAFEHIDGIEMTDSLGLPQKVVIIKLSSGSRASIYVRKMVQDE 409
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 231/465 (49%), Positives = 305/465 (65%), Gaps = 24/465 (5%)
Query: 1 MDQKLDTLEKKALVEIVKLIQKRRMEGTAGGWKDFLTSYDKKFGSS-LSDPARRSKDALS 59
M+ L T E LV++VK+ QK ++G G WK+FL YDK+ GSS LSDP++R KD L
Sbjct: 1 MEDVLATAEGVVLVKLVKVAQKLGLKGENGTWKEFLDFYDKQLGSSSLSDPSKRRKDDLV 60
Query: 60 SFLKTFTKEDDLKFIAKVVQSHLNRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYM 119
+FL T K++DL+ +AK ++ L+ D+ E+ KK S D E+ EQRLVR+TL H +YPL Y+
Sbjct: 61 AFLTTLKKKEDLQLLAKSLK--LDNDVFEKFKKKSLD-ETAEQRLVRMTLTHDEYPLDYL 117
Query: 120 FPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV 179
FPS+ E W+ T LGK T M A+DCEMVLCEDGSE +VR+ VDR+LKV +DE V
Sbjct: 118 FPSNAEDWVRTGLGKKKMEPTKIEMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFV 177
Query: 180 KPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLD 239
KP + V DYR+ ITGLTA DL T S+ +IQ+++ +S TILVG SLN+DL+VLK+D
Sbjct: 178 KPNQPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVD 237
Query: 240 HPRVIDTSLIFKY-VDEYR------RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
H RVIDTSL+FKY D R RPSL LCK +LGYE++K+G PHNC+ DA AAMKL
Sbjct: 238 HARVIDTSLVFKYNYDGTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKL 297
Query: 293 VLAIIERRVDNAVPLLQEDVAETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRI 352
VLAI++ + +VPL +E + E E+++L+LHRIP VP EEL+GV+ D E K K+
Sbjct: 298 VLAILDNGAETSVPLSKE-MLEAEKSKLYLHRIPCNVPYEELNGVVSRDIPHEVKPSKKQ 356
Query: 353 RGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLY--VRKMV 410
Y+A +F SP+EANQAFEN+ G+ KDS G QK + F + LY VRKMV
Sbjct: 357 DRHYYSAIVVFKSPEEANQAFENIAGDFGKDSRGLSQKQI-FLEPSSSEPRLYVLVRKMV 415
Query: 411 CDEPSNQIVVKKRTFEGEENAGVSKKHNIKWINEEEKIADTNQCK 455
D+ +++ EEN SKK K N + D +CK
Sbjct: 416 EDDLVGEVI-------AEENNASSKKR--KRENHSKGTRDRRRCK 451
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/333 (50%), Positives = 218/333 (65%), Gaps = 31/333 (9%)
Query: 83 NRDLVEQLKKTSPDDESPEQRLVRLTLQHPQYPLCYMFPSSDEGWLVTKLG-KSSKTMTS 141
NR ++ + KK SP ++SPEQRLVRLT ++PQY + ++F S + W V+ +G K S M
Sbjct: 13 NRLMIAKFKKESPANDSPEQRLVRLTNENPQYNVDFLFHSYSKDWFVSDVGMKMSNVMIP 72
Query: 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 201
N M A+DCEMVLCEDG+EG+VR+ VDRNLKV +DE VKP K V DYR+ ITG+TA+D+
Sbjct: 73 NQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDVQ 132
Query: 202 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRP 259
T SL +IQ++++ LS G IL+ DHP VIDTSL+FKY + + RRP
Sbjct: 133 KATLSLVDIQEKLRPFLSAGAILI-------------DHPIVIDTSLVFKYPNSRKLRRP 179
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERAR 319
SL LC SVLGYE++K G H+C+ DA+AAMKL LA+I++RVD + L + E E++R
Sbjct: 180 SLNTLCMSVLGYEVQKAGVSHHCVHDAAAAMKLALAVIKKRVDTTITLTK----EAEKSR 235
Query: 320 LFLHRIPTKVPSEELH-----GVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFE 374
LFLHRIP + SEEL P +FTI+ K K +G Y A IF S EANQAFE
Sbjct: 236 LFLHRIPHHLSSEELKKDLALKFFPKNFTIDVKPAK-TQGGYYCAVVIFGSSVEANQAFE 294
Query: 375 NVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVR 407
NV G + DS G PQKL+ I++ YVR
Sbjct: 295 NVNGYKETDSSGLPQKLISCS-----ISTFYVR 322
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
Query: 126 GWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAV 185
GW+ + S + I+ A+DCEMV E+G E + R+ +VD +V DE VKPE V
Sbjct: 259 GWVASAGDFHSPPINPKIL-AIDCEMVRTENGLE-IARVTIVDMKSEVIYDEFVKPESPV 316
Query: 186 ADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVID 245
DY ++ +G+T + L VT L+++Q +KK + N T+L+GHSLN+DL LK HP +ID
Sbjct: 317 TDYVTQYSGITEEKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIID 376
Query: 246 TSLIFKYV-DEYRRPSLYNLCKSVLGYEIRKKGT-PHNCLDDASAAMKLV 293
T+ I+ + +PSL L L EI+K G H+ +DA A + L+
Sbjct: 377 TANIYNHTRGPPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLL 426
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
+ A+DCEM + ++G E L R+ +VD +V +D+LV P + DY + +G+TA + GV
Sbjct: 215 IVALDCEMCITKEGLE-LTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAVMMEGV 273
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSLY 262
T +L +IQ+ KL+ TILVGHSL NDL LK+ H VIDT++++K+ + L
Sbjct: 274 TTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKHPHGRSYKTKLR 333
Query: 263 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVP 306
L K L EI++ + H+ +DA AAM L L I+ D P
Sbjct: 334 ILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFGSP 377
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 501 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 261
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 618
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 301
NL L I+ HN +DASA ++LV+ + +R
Sbjct: 619 RNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQRA 658
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 407 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 465
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 261
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 466 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVLDTAVLFPHYLGFPYKR-SL 524
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 301
NL LG I+ HN +DA+A ++LV+ + +R
Sbjct: 525 RNLAADYLGQIIQDSQDGHNSSEDANACLQLVMWKVRQRA 564
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 409 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 467
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 261
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 468 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 526
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 301
NL L I+ HN +DA+A ++LV+ + +R
Sbjct: 527 RNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRA 566
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 107/181 (59%), Gaps = 9/181 (4%)
Query: 114 YPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKV 173
YPL + D W+ T T + ++A+DCEM L E G L R+ +V+ + +V
Sbjct: 199 YPLDSGDTNFDTDWVQT----VDFTHGGSHIFALDCEMCLSEQGLV-LTRISLVNFDNEV 253
Query: 174 TIDELVKPEKAVADYRSEITGLTADDL-VGVTCSLAEIQKRMKKLLSNGTILVGHSLNND 232
+ELVKP+ + DY + +G+T + L VG +L E+QK + K++S IL+GHSL ND
Sbjct: 254 IYEELVKPDVPIVDYLTRYSGITEEKLTVGAKKTLREVQKDLLKIISRSDILIGHSLQND 313
Query: 233 LEVLKLDHPRVIDTSLIFKY-VDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMK 291
L+V+KL HP V+DT++I+ + + +PSL L ++ L I+ H+ ++DA A ++
Sbjct: 314 LKVMKLKHPLVVDTAIIYHHKAGDPFKPSLKYLSETFLNKSIQNG--EHDSVEDARACLE 371
Query: 292 L 292
L
Sbjct: 372 L 372
>sp|Q4R9F7|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis
GN=QtsA-10054 PE=2 SV=1
Length = 772
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 11/187 (5%)
Query: 113 QYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLK 172
+PL FP E +L+TK S ++ ++ +DCEM L G E L R+ +V
Sbjct: 201 HFPL-QGFPEC-ENFLLTKCNGS--IADNSPLFGLDCEMCLTSKGRE-LTRISLVAEGGC 255
Query: 173 VTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNND 232
+DELVKPE + DY + +G+T L VT L ++Q+++K LL +LVGHSL+ D
Sbjct: 256 CVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLD 315
Query: 233 LEVLKLDHPRVIDTSLIFKYVDEY-RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMK 291
L LK+ HP VIDTSL+ YV E RR L L K++LG +I+ P DA+ +
Sbjct: 316 LRALKMIHPYVIDTSLL--YVREQGRRFKLKFLAKAILGKDIQ---CPDRLGHDATEDAR 370
Query: 292 LVLAIIE 298
++L + +
Sbjct: 371 IILELAQ 377
>sp|Q2T9U5|REXON_BOVIN Putative RNA exonuclease NEF-sp OS=Bos taurus PE=2 SV=1
Length = 783
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 6/163 (3%)
Query: 134 KSSKTMTSN-IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEI 192
K + ++T N ++ +DCEM L G E L R+ +V +DELVKP+ + DY +
Sbjct: 219 KCNGSVTDNSPLFGLDCEMCLTSKGRE-LTRISLVAEGGGCVMDELVKPDNKIVDYLTSF 277
Query: 193 TGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY 252
+G+T L VT L ++Q+R+K LL +LVGHSL+ DL LK+ HP VIDTSL+ Y
Sbjct: 278 SGITKKILNPVTTKLKDVQRRLKILLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--Y 335
Query: 253 VDEY-RRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKLV 293
V E RR L L K++LG +I+ H+ +DA ++L
Sbjct: 336 VREQGRRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLELA 378
>sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1
Length = 774
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 102/183 (55%), Gaps = 9/183 (4%)
Query: 113 QYPLCYMFPSSDEGWLVTKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLK 172
+PL FP E +L+TK S ++ ++ +DCEM L G E L R+ +V
Sbjct: 201 HFPL-QGFPDC-ENFLLTKCNGS--IADNSPLFGLDCEMCLTSKGRE-LTRISLVAEGGC 255
Query: 173 VTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNND 232
+DELVKPE + DY + +G+T L VT L ++Q+++K LL +LVGHSL+ D
Sbjct: 256 CVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLD 315
Query: 233 LEVLKLDHPRVIDTSLIFKYVDEY-RRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAM 290
L LK+ HP VIDTSL+ YV E RR L L K +LG +I+ H+ +DA +
Sbjct: 316 LRALKMIHPYVIDTSLL--YVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTIL 373
Query: 291 KLV 293
+L
Sbjct: 374 ELA 376
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 4/153 (2%)
Query: 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
++A+DCEM G E L R+ VVD +++V D VKP+ V DY + +G+T DLV
Sbjct: 1052 VFALDCEMSYTTYGLE-LTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDT 1110
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY--VDEYRRPSL 261
+ +L ++Q + + S TIL+GHSL +DL LK+ H V+DTS++F + Y+R SL
Sbjct: 1111 SITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKR-SL 1169
Query: 262 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 294
NL L I+ H+ +DASA M LV+
Sbjct: 1170 RNLMADYLRQIIQDNVDGHSSSEDASACMHLVI 1202
>sp|A1A5R7|REXON_RAT Putative RNA exonuclease NEF-sp OS=Rattus norvegicus PE=2 SV=1
Length = 754
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 7/156 (4%)
Query: 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 200
S+ ++ +DCE+ L G E L R+ +V +DELVKP+ + DY + +G+T + L
Sbjct: 219 SSPLFGLDCEVCLTSMGKE-LTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEIL 277
Query: 201 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPS 260
VT L ++QK +++LL +LVGH L+ DL VLK+ HP VIDTSL++ + RR
Sbjct: 278 NPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLY-IGKQGRRFK 336
Query: 261 LYNLCKSVLGYEIR---KKGTPHNCLDDASAAMKLV 293
L L K +LG +I+ K G H+ ++DA A++LV
Sbjct: 337 LTFLAKVILGKDIQCPNKLG--HDGIEDARTALELV 370
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 93/153 (60%), Gaps = 8/153 (5%)
Query: 146 AVDCEMVLCED-GSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV D GSE L R+ +V+ + D+ V+P++ V DYR+ ++G+ DL G
Sbjct: 137 AIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDLKGA 196
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDEYRRP 259
S +++Q + L+ G +LVGH++ NDL+ L L HP+V+ DT+ + + + + P
Sbjct: 197 P-SFSQVQGEVANLI-KGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQPLRDLAKTKYP 254
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL L K VLG +I+ +G H+ ++DA A M +
Sbjct: 255 SLKKLAKLVLGIDIQLEGESHSSVEDARATMAV 287
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 98/167 (58%), Gaps = 11/167 (6%)
Query: 133 GKSSKTMTSNIMYAVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRS 190
GK+ K + A+DCE V + DG E L R+ VV+ + +D V+P++ V D+R+
Sbjct: 102 GKAGKVGSVGKFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRT 161
Query: 191 EITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSL 248
++G+T + +L E Q+R+ +L N +L+GH L++DLE+L + HP+ + DTS+
Sbjct: 162 WVSGITPAHMK-QAVTLEEAQRRVAAMLKN-RVLIGHGLHHDLEMLMVSHPKAQIRDTSM 219
Query: 249 IFKYVDEY---RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
+ ++Y + PSL L + VL +I +G H+ ++DA AA+ L
Sbjct: 220 HGPFREKYGAGKTPSLKKLAREVLNIDI--QGKEHSSVEDARAALLL 264
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 146 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 245 ALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 304
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 259
L +QK + ++L G ILVGH+L+NDL+VL LDHP ++ DT FK + RP
Sbjct: 305 E-ELEVVQKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRP 362
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 296
SL L + +LG ++++ H + DA AAM+L + +
Sbjct: 363 SLRLLSEKILGLQVQQ--AEHCSIQDAQAAMRLYVMV 397
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 18/175 (10%)
Query: 146 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 255 ALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 314
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 259
++K + ++L G ILVGH+L+NDL+VL LDHP ++ DT F+ + RP
Sbjct: 315 E-EFEVVKKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGRP 372
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI--------IERRVDNAVP 306
SL L + +LG IR + H + DA AAM+L + + RR A P
Sbjct: 373 SLKRLSEKILG--IRVQQAEHCSIQDAQAAMRLYVMVKREWESSTANRRAPAATP 425
>sp|Q8N1G1|REXO1_HUMAN RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3
Length = 1221
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Query: 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
T +YA+DCEM G E L R+ VVD ++ V D VKP+ + DY + +G+T D
Sbjct: 1056 THPGIYALDCEMSYTTYGLE-LTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEAD 1114
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY--VDEYR 257
L + +L ++Q + + S TIL+GHSL +DL LK+ H V+DTS++F + Y+
Sbjct: 1115 LADTSVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYK 1174
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 294
R SL NL L I+ H+ +DA A M LV+
Sbjct: 1175 R-SLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLVI 1210
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 10/153 (6%)
Query: 146 AVDCEMVLCEDGSE--GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV G L R+ +VD + D VKP++ V ++R+ ++G++ +
Sbjct: 135 AIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMR-F 193
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 259
E+Q + KLL G ILVGH L +DLE L L HP + DT+ FK R+P
Sbjct: 194 ARDFEEVQAEIDKLL-RGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGFKKYANGRKP 252
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL L + +LG EI+ G H+ ++DA A M L
Sbjct: 253 SLRVLAQQLLGVEIQ--GGEHSSIEDARATMLL 283
>sp|Q6CE69|REXO4_YARLI RNA exonuclease 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX4 PE=3 SV=1
Length = 291
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCE V + +G+ L R+ +V+ V +DE VKP + V D+R+ ++G+T +V
Sbjct: 135 ALDCEFVGVGPNGARSILARVSIVNYYGHVLMDEYVKPIERVTDWRTWVSGVTPA-MVAN 193
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDT--SLIFKYVDEYRRP 259
S +E Q+R+K+LL NG L+GH+L NDL VL LDHPR + DT FK V + P
Sbjct: 194 GISFSEAQERVKRLL-NGRTLIGHALINDLAVLGLDHPRADIRDTQKPQYFKTVCGCKTP 252
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL ++ K + I++ H+ + DA AAM L
Sbjct: 253 SLKHVMKECVDLNIQQ--GEHSSVIDAQAAMLL 283
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 8/167 (4%)
Query: 130 TKLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYR 189
+KL + + T A+DCEMV D L R+ +V+ + V D V+P++ V D+R
Sbjct: 79 SKLTRKTNLETLGKYIAMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWR 138
Query: 190 SEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS 247
+ ++G+ + + S ++Q + K+L N +LVGH+++NDL+VL L HPR + DTS
Sbjct: 139 TWVSGVKSFHMRDAP-SFEKVQAEVAKILDN-RVLVGHAVHNDLKVLLLSHPRRMIRDTS 196
Query: 248 LIFKY--VDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
Y + + R P L L + +LG +I+ H+ + DA A M+L
Sbjct: 197 RFSGYRKLAKGRTPGLKKLAEVILGRDIQ--SGQHSSVQDAQATMEL 241
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 15/154 (9%)
Query: 146 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 201
A+DCE V G EG L R+ +V+ + V +D VKP + V D+R+ ++G+T D +
Sbjct: 97 AMDCEFVGV--GPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMK 154
Query: 202 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDEY--- 256
S + Q+++ +L + ILVGH++ +DLE L L HP +VIDT+ + +Y
Sbjct: 155 N-AVSFKQAQQQLSDILKD-KILVGHAVKHDLEALMLSHPKSKVIDTARHLPFRQKYAKG 212
Query: 257 RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAM 290
+ PSL L K +L +I+ H+ ++DA A M
Sbjct: 213 KSPSLKKLAKEILNMDIQ--SGQHSSVEDARATM 244
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + +G E L R+ +V+ + V +D V+P + V DYR+ I+G+ DL+G
Sbjct: 134 AIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLGA 193
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDEYRRP 259
E+ K++ LL + IL+GH+++NDL+VL L HP + DT + + + +RP
Sbjct: 194 P-QFDEVNKQVANLLHD-KILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRP 251
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
L L + +LG +I+ H+ + DA AM L
Sbjct: 252 GLKKLSELLLGVQIQT--GAHSSVVDARVAMAL 282
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + +G E L R+ +V+ + V +D V+P + V DYR+ I+G+ DL+G
Sbjct: 134 AIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLGA 193
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDEYRRP 259
E+ K++ LL + IL+GH+++NDL+VL L HP + DT + + + +RP
Sbjct: 194 P-QFDEVNKQVANLLHD-KILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRP 251
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
L L + +LG +I+ H+ + DA AM L
Sbjct: 252 GLKKLSELLLGVQIQT--GAHSSVVDARVAMAL 282
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 90/153 (58%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + DG E L R+ +V+ K D+ V+P + V DYR+ ++G+ DD+
Sbjct: 230 AMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDIKNG 289
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 259
+ ++Q + ++L G LVGH+++NDL++L LDHP+ + DT FK + RP
Sbjct: 290 E-AFKDVQAEVAEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKSGRP 347
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL LC+ +L +++ H + DA AAM+L
Sbjct: 348 SLKLLCEKILNVKVQTGE--HCSVQDAQAAMRL 378
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 10/153 (6%)
Query: 146 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCE V + +G+E L R+ +V+ D+ VKP + V D+R+ ++G+T +
Sbjct: 101 AMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHM-NE 159
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 259
S E Q KLL G ILVGH++++DL+ L L HP R+ DTS F+ + + P
Sbjct: 160 AISFQEAQNETSKLL-EGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSISMGKTP 218
Query: 260 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
SL L L +I+ G+ H+ ++DA A M L
Sbjct: 219 SLKKLSSHFLKIDIQ--GSAHSSVEDARATMLL 249
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 12/154 (7%)
Query: 146 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCEMV + DG E L R+ +V+ K D+ VKP + V DYR+ ++G+ +D V
Sbjct: 236 AMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPED-VKK 294
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 259
+QK + ++L G LVGH+++NDL++L LDHP+ + DT FK + RP
Sbjct: 295 GEPFKVVQKEVSEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKSGRP 353
Query: 260 SLYNLCKSVLGYEIRKKGTPHNC-LDDASAAMKL 292
SL LC+ +L +++ T +C + DA AAM+L
Sbjct: 354 SLKLLCEKILNVKVQ---TGEHCSVQDAQAAMRL 384
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 11/154 (7%)
Query: 146 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
A+DCE V + +G E L R+ +V+ V +DE VKP + V ++R+ ++G+ + +
Sbjct: 123 AMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKNA 182
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYVDEY---RR 258
+ E QK+ +L G ILVGH+L +DLE L L HP+ + DTS + Y +
Sbjct: 183 -ITFKEAQKKTADILE-GRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKT 240
Query: 259 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
PSL L + VL I++ H+ ++DA A M L
Sbjct: 241 PSLKKLTREVLKISIQE--GEHSSVEDARATMLL 272
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 146 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGL--------TA 197
AVDCEM+ G E L R+ +D + K T+D +V+P + DY + +G+ T
Sbjct: 599 AVDCEMLYTSLGME-LCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGISDINEPIITE 657
Query: 198 DDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYR 257
G + S E + + KL++ TILVGH L NDL ++L H R+IDTS+++ +
Sbjct: 658 SGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDRIIDTSILYPDFNPRY 717
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 293
+ +L L L I+ H+ ++DA AA+ +V
Sbjct: 718 KTALKTLALKYLKRTIQTG--EHDSMEDALAALDVV 751
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 200
S +YA+DCEMV G L RL +VD +D VKP V D +E +GLT + +
Sbjct: 1475 STRVYALDCEMVYTIAGP-ALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQI 1533
Query: 201 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFK 251
+L +++ K ++ TIL+GHSL +DL+ +++ H VIDT+++F+
Sbjct: 1534 NSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVHKNVIDTAILFR 1584
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 16/171 (9%)
Query: 133 GKSSKTMTSNIMYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADY 188
GK+S + S + A+DCEMV G G L R +V + V D+ ++PE +ADY
Sbjct: 100 GKASGPLPSKCV-AIDCEMV--GTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADY 156
Query: 189 RSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDT 246
R+ +G+T + QK + KLL G ++VGH+L+ND + LK HPR DT
Sbjct: 157 RTRWSGITRQHMRKAV-PFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDT 214
Query: 247 SLIFKYVDE-----YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
+ + ++ E R SL +L +L +I+ H+ ++DA+ AM+L
Sbjct: 215 TYVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 134 KSSKTMTSNIMYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYR 189
+++K+ T ++DCEMV G G L R +VD + D V+P V D+R
Sbjct: 206 QATKSNTLGKYLSIDCEMV--GTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWR 263
Query: 190 SEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS 247
+ ++G++ + S +Q + LL G ILVGH + +DLEVL +HP + DT+
Sbjct: 264 THVSGISKRHMASAR-SFESVQATVAALL-KGRILVGHDVKHDLEVLGFEHPHRDIRDTA 321
Query: 248 LI--FKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
F+ +PSL L K VLG EI + H+ ++DA AM L
Sbjct: 322 KYSGFRKYGHGPKPSLRVLAKEVLGIEIHQGQ--HSSVEDARVAMLL 366
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 133 GKSSKTMTSNIMYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADY 188
GK+S + S + A+DCEMV G G L R +V + V D+ ++PE + DY
Sbjct: 100 GKASGPLPSKCV-AIDCEMV--GTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDY 156
Query: 189 RSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDT 246
R+ +G+T + QK + KLL G ++VGH+L+ND + LK HPR DT
Sbjct: 157 RTRWSGITRQHMCKAI-PFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDT 214
Query: 247 SLIFKYVDEYR-----RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
+ + ++ E R SL +L +L +I+ H+ ++DA+ AM+L
Sbjct: 215 TYVPNFLSEPSLHIRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 11/154 (7%)
Query: 146 AVDCEMVLC---EDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVG 202
A+DCEMV D L R+ +V+ N + D V+P++ + D+R+ ++G++ +
Sbjct: 118 AMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMAE 177
Query: 203 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS--LIFKYVDEYRR 258
SL ++QK + ++L +G ILVGH+++NDL+ L L HP+ + DTS ++ +
Sbjct: 178 AR-SLEQVQKDVAEIL-DGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIAGGGS 235
Query: 259 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
P L L LG I+ H+ ++DA A M L
Sbjct: 236 PRLKILASEFLGLNIQDGA--HSSVEDAKATMLL 267
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Query: 146 AVDCEMVLCEDGSEGLVRLCVVD-RNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
A+DCEM G E ++R+ +VD + +V D+++KP + D S+ +G+ D T
Sbjct: 322 ALDCEMAFTSKGYE-MIRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGIHHIDDTAPT 380
Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNL 264
AE +++ +IL+GH L+NDL V+++ H +VIDT++++ +Y+ SL NL
Sbjct: 381 IHEAEKCYICPSMINQNSILIGHGLDNDLRVMRIVHDKVIDTAVLYP-AGKYKS-SLKNL 438
Query: 265 CKSVLGYEIRKKGTPHNCLDDASAAMKLV 293
+L I +G H+ +DA AAM ++
Sbjct: 439 SFEILSRRI--QGGEHDSSEDAIAAMDVI 465
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 10/155 (6%)
Query: 146 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
A+DCEMV + GL R +V+ + V D+ ++PE + DYR+ ++G+T +VG T
Sbjct: 9 AMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHMVGAT 68
Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS---LIFK--YVDEYR 257
A + + +LL G ++VGH L +D + LK D R + DTS L+++ +D R
Sbjct: 69 -PFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAKLDHCR 126
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
R SL LC+ +L I+ H+ ++DA A M+L
Sbjct: 127 RVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMEL 161
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 11/154 (7%)
Query: 146 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 203
++DCE V + DG + L R+ +V+ V +D V+P++ V D+R+ ++G+ +
Sbjct: 121 SMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMANA 180
Query: 204 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEY---RR 258
+ QK++ +L G ILVGHS+++DL L L HPR + DTS + +Y +
Sbjct: 181 VTQ-EDCQKQVSNVL-KGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKT 238
Query: 259 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
PSL L K +L +I+ H+ ++DA A M L
Sbjct: 239 PSLKKLTKEILQLDIQ--DGEHSSIEDARATMLL 270
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 94/170 (55%), Gaps = 19/170 (11%)
Query: 146 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTA----DD 199
A+DCE V + +DG E L R+ +++ V +D V+P++ V D+R+ ++G+ + D
Sbjct: 118 AIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDWRTWVSGIQSYHMQDA 177
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDE 255
+ T L ++ L N ILVGH++NNDL++L L HP+ + DT F+ +
Sbjct: 178 IDFKTAQLKTME------LINNKILVGHAVNNDLDILFLSHPKSMIRDTCKFPKFREIAG 231
Query: 256 YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 305
+ PSL L K + +I+ H+ ++DA A M L+ + +R ++ ++
Sbjct: 232 GKSPSLKKLIKHFIQVDIQIGQ--HSSVEDARATM-LLFRLFKREIEQSM 278
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 144 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
M A+DCEMV G +G L R +V+ N V DE + P + DYR+ +G+
Sbjct: 179 MVAIDCEMV--GTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQH 236
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYVDEYR 257
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS I +
Sbjct: 237 MVNAT-PFKIARGQILKILT-GKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKAD 294
Query: 258 RP-----SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
P SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 295 CPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
>sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex3 PE=3 SV=1
Length = 540
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 146 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 205
A+DCE+ +G E L RL VV + + +D +KP+ + + +G+ +
Sbjct: 384 ALDCELCYTTNGME-LARLTVVAKE-SIIMDVFIKPKGKILSLNTRFSGIHDAKELESGI 441
Query: 206 SLAEIQKRMKKL-LSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSLYN 263
++ ++ ++K+L ++ TIL+GH L NDL ++L H RVIDT+L+F + R SL
Sbjct: 442 TMDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKY 501
Query: 264 LCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 294
L K LG I+ + H+ +DA +A++LV
Sbjct: 502 LTKKYLGTTIQT--STHDSEEDAVSALQLVF 530
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 10/155 (6%)
Query: 146 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 204
A+DCEMV L GL R +V+ + V D+ ++PE + DYR+ ++G+T +VG T
Sbjct: 9 AMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT 68
Query: 205 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTS---LIFK--YVDEYR 257
A + + +LL G ++VGH L +D + LK D + DTS L+++ +D R
Sbjct: 69 -PFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCR 126
Query: 258 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
R SL L + +L I+ H+ ++DA A M+L
Sbjct: 127 RVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 144 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
M A+DCEMV G +G L R +V+ N V DE ++P + DYR+ +G+
Sbjct: 195 MVAIDCEMV--GTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCH 252
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 254
+V T + ++ K+LS G ++VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 253 MVNAT-PFKTARSQILKILS-GKVVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLNRKAD 310
Query: 255 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
E SL +L K +L +I+ + H+ ++DA A ++L
Sbjct: 311 CPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLEL 350
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 144 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
M A+DCEMV G +G L R +V+ N V DE V P + +YR+ +G+
Sbjct: 194 MVAIDCEMV--GTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCH 251
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 254
+V T + ++ K+LS G +++GH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 252 MVNAT-PFKTARSQILKILS-GKVVIGHAIHNDYKALQYFHPKSLTRDTSRIPLLNRKAD 309
Query: 255 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
E SL +L K +L +I+ T H+ ++DA A M+L
Sbjct: 310 CPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMEL 349
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 144 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 199
M A+DCEMV G +G L R +V+ + V DE + P + DYR+ +G+
Sbjct: 175 MVAIDCEMV--GTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQH 232
Query: 200 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 254
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 233 MVNAT-PFKIARNQILKILA-GKIVVGHAIHNDFKALQYIHPKSLTRDTSHIPLLNRKAD 290
Query: 255 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
E SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 291 CPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMEL 330
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 17/159 (10%)
Query: 146 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 200
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 111 AIDCEMV--GTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 168
Query: 201 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEYR- 257
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + + +
Sbjct: 169 KAIPFQVA--QKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLSQPSS 225
Query: 258 ----RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 226 LIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMEL 264
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 17/159 (10%)
Query: 146 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 201
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 107 AIDCEMVGT--GPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 164
Query: 202 -GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDEYR- 257
+ +A QK + KLL G ++VGH+L+ND + LK HP ++ DT+ + + +
Sbjct: 165 KAIPFQVA--QKEILKLL-KGKVVVGHALHNDFQALKYVHPGSQIRDTTYVPNLLSQPSS 221
Query: 258 ----RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 222 LTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMEL 260
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 131 KLGKSSKTMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDR-NLKVTIDELVKPEKAVADYR 189
+L ++ T + + + +DCEM G E L+R+ +D K +D +KP + D+
Sbjct: 228 ELFTTTSTKSKSRVLGIDCEMGFTTKGFE-LMRITAIDYFTSKTVLDIFIKPIGEIVDFN 286
Query: 190 SEITGL--TADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTS 247
+ +G+ DD + S + +++ +++ + TIL+GH L ND+ ++L H +IDTS
Sbjct: 287 TRYSGIHELTDDFL----SWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENIIDTS 342
Query: 248 LIFKY---VDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 301
++F RR SL +L L I+ H+ +D+ AA+ +V +++++
Sbjct: 343 ILFPNKWKTGPTRRWSLKDLAFEFLSRRIQT--GEHDSCEDSIAAIDIVKYFVKKQL 397
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%)
Query: 146 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTI-DELVKPEKAVADYRSEITGLTADDLVGVT 204
A+DCEM G E +VRL +VD T+ DE+++P V D ++ +G+ +D++
Sbjct: 241 ALDCEMGFTTMGYE-MVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDILYAK 299
Query: 205 CSLAEIQKRMKK-LLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYN 263
++ ++ +++ +IL+GH L NDL V++L H R++DT++++ V ++ SL N
Sbjct: 300 DYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTRILDTAIMYS-VGRFKN-SLKN 357
Query: 264 LCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQED 311
L +L +I+ H+ DA AAM ++ + N + + Q D
Sbjct: 358 LSFEILSRKIQLG--EHDSSQDAIAAMDII------KAKNGISITQTD 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,228,232
Number of Sequences: 539616
Number of extensions: 7544340
Number of successful extensions: 25019
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 24785
Number of HSP's gapped (non-prelim): 246
length of query: 502
length of database: 191,569,459
effective HSP length: 122
effective length of query: 380
effective length of database: 125,736,307
effective search space: 47779796660
effective search space used: 47779796660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)