Query 010743
Match_columns 502
No_of_seqs 352 out of 1365
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 100.0 3.8E-32 1.3E-36 256.2 15.5 158 141-300 4-169 (189)
2 2p1j_A POLIII, DNA polymerase 100.0 2.1E-29 7.2E-34 236.6 15.7 156 140-301 10-177 (186)
3 2gui_A DNA polymerase III epsi 100.0 1.7E-28 5.9E-33 230.8 15.9 154 142-299 9-184 (194)
4 1w0h_A 3'-5' exonuclease ERI1; 99.9 7E-28 2.4E-32 227.7 12.1 159 141-304 9-199 (204)
5 3mxm_B Three prime repair exon 99.9 1.1E-27 3.7E-32 235.0 8.5 154 141-299 11-214 (242)
6 1y97_A Three prime repair exon 99.9 1.2E-26 4.2E-31 224.7 13.3 156 139-299 7-209 (238)
7 3u3y_B Three prime repair exon 99.9 1.5E-26 5.1E-31 235.5 9.8 153 142-299 12-214 (314)
8 2f96_A Ribonuclease T; RNAse, 99.9 8.7E-26 3E-30 217.6 14.1 156 140-300 27-213 (224)
9 1zbh_A 3'-5' exonuclease ERI1; 99.9 1E-25 3.6E-30 227.1 14.7 159 142-304 78-267 (299)
10 2xri_A ERI1 exoribonuclease 3; 99.9 6E-26 2.1E-30 219.3 11.5 159 142-305 31-219 (224)
11 2igi_A Oligoribonuclease; RNAs 99.9 1.6E-25 5.4E-30 208.2 12.8 146 141-300 4-177 (180)
12 3cg7_A CRN-4, cell death-relat 99.9 1.6E-25 5.6E-30 227.1 9.3 158 142-304 19-213 (308)
13 3v9w_A Ribonuclease T; DEDD nu 99.9 8.2E-25 2.8E-29 212.0 13.1 157 140-301 35-222 (235)
14 2gbz_A Oligoribonuclease; ORN, 99.9 7.7E-25 2.6E-29 207.2 11.7 144 140-300 7-181 (194)
15 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 5.3E-25 1.8E-29 227.1 11.4 160 141-304 127-317 (349)
16 3tr8_A Oligoribonuclease; tran 99.9 2.3E-24 7.7E-29 204.5 11.0 148 140-301 7-182 (186)
17 2qxf_A Exodeoxyribonuclease I; 99.9 1.2E-23 4.2E-28 225.2 11.9 158 139-300 6-201 (482)
18 2kfn_A Klenow fragment of DNA 99.0 7.2E-09 2.5E-13 113.7 15.9 142 142-300 26-193 (605)
19 4hec_A Putative uncharacterize 98.8 4.2E-08 1.4E-12 93.2 12.7 153 138-298 18-180 (190)
20 1x9m_A DNA polymerase; DNA plo 98.8 4.7E-09 1.6E-13 117.1 6.5 137 144-305 1-188 (698)
21 4dfk_A DNA polymerase I, therm 98.3 1E-06 3.6E-11 95.6 8.0 118 143-300 11-128 (540)
22 3saf_A Exosome component 10; e 98.0 3.3E-05 1.1E-09 81.6 12.5 132 141-300 128-277 (428)
23 4gmj_B CCR4-NOT transcription 97.9 6.7E-05 2.3E-09 75.4 12.9 160 142-305 34-250 (285)
24 1qht_A Protein (DNA polymerase 97.9 2.6E-05 9E-10 87.9 9.1 141 141-297 134-327 (775)
25 3d45_A Poly(A)-specific ribonu 97.7 0.00015 5.1E-09 78.1 10.8 163 206-377 264-494 (507)
26 2e6m_A Werner syndrome ATP-dep 97.6 0.00048 1.7E-08 64.7 11.6 88 212-299 86-194 (208)
27 2d5r_A CCR4-NOT transcription 97.6 0.001 3.5E-08 65.6 14.1 160 142-305 24-240 (252)
28 1noy_A Protein (DNA polymerase 97.5 0.00089 3E-08 69.5 14.0 151 141-296 105-335 (388)
29 1vk0_A Hypothetical protein; h 97.5 0.0004 1.4E-08 66.4 9.7 86 213-298 99-205 (206)
30 3pv8_A DNA polymerase I; DNA p 97.4 0.00018 6.2E-09 78.9 7.7 129 143-299 30-180 (592)
31 1yt3_A Ribonuclease D, RNAse D 97.4 0.0017 5.8E-08 66.9 13.4 131 142-300 22-170 (375)
32 2p51_A SPCC18.06C protein; DED 97.3 0.0031 1.1E-07 64.5 13.8 162 138-303 41-259 (333)
33 1uoc_A POP2; hydrolase, DEDD n 97.2 0.0035 1.2E-07 63.0 13.7 159 139-300 35-265 (289)
34 2hbj_A Exosome complex exonucl 97.1 0.0031 1.1E-07 66.1 11.8 132 142-301 106-255 (410)
35 3iay_A DNA polymerase delta ca 97.0 0.003 1E-07 72.6 11.7 144 140-296 247-465 (919)
36 1s5j_A DNA polymerase I; repli 96.8 0.008 2.7E-07 68.5 13.0 148 140-293 188-386 (847)
37 3cym_A Uncharacterized protein 96.6 0.022 7.6E-07 60.2 13.6 132 143-299 39-186 (440)
38 3qex_A DNA polymerase, GP43; d 96.5 0.031 1.1E-06 64.1 15.1 150 142-295 108-337 (903)
39 2a1r_A Poly(A)-specific ribonu 96.4 0.0088 3E-07 63.1 9.3 96 199-299 263-396 (430)
40 2gv9_A DNA polymerase; polymer 96.3 0.023 7.8E-07 67.0 12.7 154 140-296 318-550 (1193)
41 3k59_A POL II, DNA polymerase 96.1 0.057 1.9E-06 61.1 14.3 140 139-296 150-349 (786)
42 2fc8_A NCL protein; structure 96.0 0.0093 3.2E-07 49.0 5.8 62 319-380 17-78 (102)
43 1x5o_A RNA binding motif, sing 95.8 0.032 1.1E-06 46.7 8.1 66 318-385 26-95 (114)
44 4fxv_A ELAV-like protein 1; RN 95.5 0.011 3.9E-07 49.1 4.2 61 319-380 21-85 (99)
45 2fc9_A NCL protein; structure 95.4 0.021 7.2E-07 46.8 5.6 60 319-379 17-76 (101)
46 1x4e_A RNA binding motif, sing 95.4 0.023 8E-07 44.9 5.5 62 319-380 7-71 (85)
47 2lkz_A RNA-binding protein 5; 95.3 0.014 4.7E-07 48.7 4.0 64 317-380 9-77 (95)
48 2dnh_A Bruno-like 5, RNA bindi 95.2 0.03 1E-06 46.1 6.0 64 319-383 17-83 (105)
49 2d9p_A Polyadenylate-binding p 95.2 0.029 1E-06 46.1 5.8 61 319-380 17-79 (103)
50 1x4a_A Splicing factor, argini 95.2 0.014 4.7E-07 48.7 3.7 62 319-380 24-85 (109)
51 2e5h_A Zinc finger CCHC-type a 95.1 0.032 1.1E-06 44.9 5.5 62 319-380 18-82 (94)
52 2dgp_A Bruno-like 4, RNA bindi 95.0 0.044 1.5E-06 45.2 6.4 71 319-389 15-88 (106)
53 2cq3_A RNA-binding protein 9; 95.0 0.024 8.2E-07 46.6 4.7 62 319-380 17-79 (103)
54 3md1_A Nuclear and cytoplasmic 95.0 0.028 9.7E-07 44.1 4.9 62 319-380 3-67 (83)
55 1x5t_A Splicing factor 3B subu 94.9 0.023 7.9E-07 45.9 4.4 62 319-380 7-72 (96)
56 2cq0_A Eukaryotic translation 94.9 0.042 1.4E-06 45.1 6.0 62 319-380 17-81 (103)
57 3nmr_A Cugbp ELAV-like family 94.9 0.041 1.4E-06 48.4 6.3 93 319-411 5-105 (175)
58 4f25_A Polyadenylate-binding p 94.8 0.015 5.1E-07 49.4 3.1 62 319-380 7-69 (115)
59 2dgv_A HnRNP M, heterogeneous 94.8 0.028 9.6E-07 45.1 4.5 61 319-380 10-72 (92)
60 4a8x_A RNA-binding protein wit 94.8 0.015 5.1E-07 46.1 2.8 62 319-380 6-71 (88)
61 1why_A Hypothetical protein ri 94.7 0.024 8.1E-07 46.2 3.9 59 319-380 19-77 (97)
62 2dnz_A Probable RNA-binding pr 94.6 0.052 1.8E-06 43.7 5.8 62 319-380 7-71 (95)
63 3bs9_A Nucleolysin TIA-1 isofo 94.5 0.029 1E-06 44.4 3.9 62 319-380 8-72 (87)
64 2dgw_A Probable RNA-binding pr 94.5 0.032 1.1E-06 44.8 4.2 60 319-380 12-73 (91)
65 3nmr_A Cugbp ELAV-like family 94.4 0.042 1.4E-06 48.4 5.2 72 319-390 97-170 (175)
66 2ek1_A RNA-binding protein 12; 94.4 0.043 1.5E-06 44.2 4.8 62 319-380 17-81 (95)
67 3p5t_L Cleavage and polyadenyl 94.4 0.03 1E-06 45.1 3.8 61 319-380 3-69 (90)
68 2cpe_A RNA-binding protein EWS 94.4 0.041 1.4E-06 46.0 4.8 62 319-380 17-89 (113)
69 2la6_A RNA-binding protein FUS 94.4 0.04 1.4E-06 45.0 4.6 61 319-380 15-87 (99)
70 2cqc_A Arginine/serine-rich sp 94.4 0.033 1.1E-06 44.8 4.0 63 318-380 16-81 (95)
71 2cqp_A RNA-binding protein 12; 94.4 0.043 1.5E-06 44.5 4.7 61 319-379 17-80 (98)
72 2x1f_A MRNA 3'-END-processing 94.4 0.034 1.2E-06 45.2 4.1 61 319-379 4-67 (96)
73 1x5s_A Cold-inducible RNA-bind 94.4 0.055 1.9E-06 44.3 5.4 62 319-380 14-78 (102)
74 2do4_A Squamous cell carcinoma 94.4 0.041 1.4E-06 45.0 4.6 60 319-380 19-82 (100)
75 2krb_A Eukaryotic translation 94.3 0.029 9.7E-07 44.3 3.4 60 320-380 4-71 (81)
76 2div_A TRNA selenocysteine ass 94.3 0.026 9E-07 45.9 3.3 62 319-380 11-76 (99)
77 1fjc_A Nucleolin RBD2, protein 94.2 0.021 7.3E-07 46.2 2.6 59 318-379 17-76 (96)
78 3lqv_A PRE-mRNA branch site pr 94.2 0.039 1.3E-06 46.3 4.2 61 319-380 10-71 (115)
79 2e5g_A U6 snRNA-specific termi 94.2 0.038 1.3E-06 44.8 4.1 58 319-379 10-67 (94)
80 1whw_A Hypothetical protein ri 94.2 0.041 1.4E-06 44.8 4.2 62 319-380 10-74 (99)
81 3mdf_A Peptidyl-prolyl CIS-tra 94.2 0.037 1.3E-06 43.6 3.8 62 319-380 9-73 (85)
82 2dnm_A SRP46 splicing factor; 94.1 0.034 1.2E-06 45.7 3.6 62 319-380 15-79 (103)
83 2err_A Ataxin-2-binding protei 94.1 0.029 9.9E-07 47.1 3.2 60 319-380 31-93 (109)
84 2khc_A Testis-specific RNP-typ 94.1 0.052 1.8E-06 45.7 4.8 62 319-380 42-106 (118)
85 2cqb_A Peptidyl-prolyl CIS-tra 94.1 0.041 1.4E-06 45.1 4.0 61 319-379 14-77 (102)
86 2cpj_A Non-POU domain-containi 94.1 0.04 1.4E-06 45.0 3.9 59 319-380 17-75 (99)
87 2kxn_B Transformer-2 protein h 94.0 0.067 2.3E-06 46.6 5.5 62 319-380 48-112 (129)
88 2cph_A RNA binding motif prote 94.0 0.048 1.6E-06 44.9 4.4 62 319-380 17-83 (107)
89 2cqi_A Nucleolysin TIAR; RNA r 94.0 0.025 8.6E-07 46.5 2.6 60 319-380 17-79 (103)
90 1x5u_A Splicing factor 3B subu 94.0 0.043 1.5E-06 45.1 4.0 62 319-380 17-81 (105)
91 1p27_B RNA-binding protein 8A; 94.0 0.045 1.5E-06 45.1 4.1 62 319-380 25-89 (106)
92 2lxi_A RNA-binding protein 10; 94.0 0.037 1.3E-06 45.1 3.5 58 320-377 4-65 (91)
93 3s8s_A Histone-lysine N-methyl 94.0 0.059 2E-06 45.7 4.9 62 319-380 8-72 (110)
94 2jrs_A RNA-binding protein 39; 93.9 0.052 1.8E-06 45.6 4.4 62 319-380 28-92 (108)
95 2mss_A Protein (musashi1); RNA 93.8 0.048 1.6E-06 42.0 3.7 59 320-379 2-63 (75)
96 1p1t_A Cleavage stimulation fa 93.8 0.049 1.7E-06 44.6 3.9 63 317-380 8-74 (104)
97 1fxl_A Paraneoplastic encephal 93.8 0.085 2.9E-06 45.8 5.7 90 319-411 4-98 (167)
98 2dgs_A DAZ-associated protein 93.7 0.094 3.2E-06 42.7 5.6 60 319-379 12-74 (99)
99 2ytc_A PRE-mRNA-splicing facto 93.7 0.046 1.6E-06 43.1 3.6 58 319-379 14-72 (85)
100 3ulh_A THO complex subunit 4; 93.7 0.054 1.8E-06 44.7 4.1 62 319-380 31-94 (107)
101 2do0_A HnRNP M, heterogeneous 93.6 0.071 2.4E-06 44.5 4.7 62 319-380 17-80 (114)
102 1x4c_A Splicing factor, argini 93.6 0.038 1.3E-06 46.2 2.9 59 319-381 17-75 (108)
103 1wg1_A KIAA1579 protein, homol 93.5 0.048 1.6E-06 43.7 3.4 58 319-380 7-64 (88)
104 1uaw_A Mouse-musashi-1; RNP-ty 93.5 0.063 2.1E-06 41.4 4.0 59 319-377 2-63 (77)
105 2dgt_A RNA-binding protein 30; 93.5 0.044 1.5E-06 44.1 3.1 57 319-380 12-68 (92)
106 1wg5_A Heterogeneous nuclear r 93.5 0.12 4E-06 42.9 5.8 66 319-388 17-85 (104)
107 1oo0_B CG8781-PA, drosophila Y 93.5 0.057 1.9E-06 44.9 3.9 62 319-380 28-92 (110)
108 3ex7_B RNA-binding protein 8A; 93.5 0.059 2E-06 45.9 4.0 63 319-381 24-89 (126)
109 1whx_A Hypothetical protein ri 93.4 0.071 2.4E-06 45.0 4.5 66 319-390 12-77 (111)
110 2dng_A Eukaryotic translation 93.4 0.11 3.6E-06 42.7 5.4 59 319-379 17-78 (103)
111 2ki2_A SS-DNA binding protein 93.4 0.057 2E-06 43.1 3.6 68 319-390 3-73 (90)
112 2dgo_A Cytotoxic granule-assoc 93.4 0.061 2.1E-06 45.0 3.9 61 319-380 17-81 (115)
113 2ywk_A Putative RNA-binding pr 93.4 0.051 1.7E-06 43.8 3.3 62 318-380 17-81 (95)
114 3beg_B Splicing factor, argini 93.3 0.038 1.3E-06 46.9 2.6 66 318-390 17-82 (115)
115 2fy1_A RNA-binding motif prote 93.3 0.067 2.3E-06 45.5 4.1 61 319-380 9-72 (116)
116 2cpd_A Apobec-1 stimulating pr 93.3 0.061 2.1E-06 43.9 3.7 57 319-380 17-75 (99)
117 2dnq_A RNA-binding protein 4B; 93.2 0.064 2.2E-06 43.0 3.7 57 319-380 10-66 (90)
118 2dhg_A TRNA selenocysteine ass 93.2 0.05 1.7E-06 44.7 3.1 61 319-380 11-75 (104)
119 2cpz_A CUG triplet repeat RNA- 93.2 0.054 1.9E-06 45.4 3.4 63 318-380 26-91 (115)
120 2cpi_A CCR4-NOT transcription 93.2 0.078 2.7E-06 44.5 4.3 62 319-380 17-87 (111)
121 2la4_A Nuclear and cytoplasmic 93.1 0.05 1.7E-06 44.5 3.0 59 319-380 29-87 (101)
122 2cpf_A RNA binding motif prote 93.1 0.056 1.9E-06 43.8 3.2 62 319-380 7-74 (98)
123 2dnl_A Cytoplasmic polyadenyla 93.1 0.089 3E-06 44.4 4.5 59 319-377 10-73 (114)
124 3ucg_A Polyadenylate-binding p 93.1 0.078 2.7E-06 42.0 4.0 63 317-380 6-71 (89)
125 1wi8_A EIF-4B, eukaryotic tran 93.1 0.13 4.4E-06 42.3 5.4 60 319-380 17-80 (104)
126 2dnn_A RNA-binding protein 12; 93.0 0.11 3.9E-06 44.1 5.0 59 317-378 16-77 (109)
127 1x4h_A RNA-binding protein 28; 92.9 0.085 2.9E-06 43.7 4.2 59 319-377 17-78 (111)
128 2jvo_A Nucleolar protein 3; nu 92.9 0.077 2.6E-06 44.6 3.8 58 319-381 33-90 (108)
129 1fje_B Nucleolin RBD12, protei 92.8 0.12 4.2E-06 45.7 5.3 60 318-379 100-159 (175)
130 2lmi_A GRSF-1, G-rich sequence 92.8 0.12 4E-06 43.1 4.8 59 319-379 13-77 (107)
131 2e5j_A Methenyltetrahydrofolat 92.8 0.041 1.4E-06 44.8 2.0 60 319-380 21-80 (97)
132 2ku7_A MLL1 PHD3-CYP33 RRM chi 92.8 0.073 2.5E-06 45.8 3.7 61 319-379 65-128 (140)
133 1wez_A HnRNP H', FTP-3, hetero 92.8 0.13 4.4E-06 42.8 5.0 67 319-389 17-84 (102)
134 2dgx_A KIAA0430 protein; RRM d 92.7 0.045 1.5E-06 44.7 2.1 59 319-380 11-76 (96)
135 2cq1_A PTB-like protein L; RRM 92.7 0.12 4.1E-06 43.4 4.8 57 319-378 17-73 (101)
136 2dnp_A RNA-binding protein 14; 92.7 0.045 1.5E-06 43.9 2.0 57 319-380 11-67 (90)
137 2cq2_A Hypothetical protein LO 92.6 0.042 1.4E-06 47.7 1.9 60 319-381 27-88 (114)
138 2db1_A Heterogeneous nuclear r 92.6 0.13 4.5E-06 43.8 5.0 58 319-378 19-82 (118)
139 1wex_A Hypothetical protein (r 92.6 0.091 3.1E-06 44.3 3.9 58 319-379 17-74 (104)
140 1b7f_A Protein (SXL-lethal pro 92.5 0.13 4.5E-06 44.8 5.0 63 319-381 5-70 (168)
141 2cpy_A RNA-binding protein 12; 92.5 0.11 3.6E-06 43.9 4.2 55 319-375 17-76 (114)
142 1h2v_Z 20 kDa nuclear CAP bind 92.5 0.092 3.1E-06 46.5 4.0 62 319-380 41-105 (156)
143 1nu4_A U1A RNA binding domain; 92.5 0.038 1.3E-06 44.7 1.3 61 319-380 10-75 (97)
144 3s7r_A Heterogeneous nuclear r 92.5 0.1 3.4E-06 41.4 3.8 56 319-375 13-72 (87)
145 2j76_E EIF-4B, EIF4B, eukaryot 92.4 0.18 6.1E-06 41.4 5.4 61 318-380 20-84 (100)
146 2dgu_A Heterogeneous nuclear r 92.4 0.051 1.8E-06 44.8 2.0 57 319-380 13-69 (103)
147 2jvr_A Nucleolar protein 3; RN 92.3 0.043 1.5E-06 47.1 1.6 60 319-379 30-90 (111)
148 3md3_A Nuclear and cytoplasmic 92.3 0.14 4.7E-06 44.5 4.8 62 319-380 89-153 (166)
149 2cpx_A Hypothetical protein FL 92.3 0.067 2.3E-06 44.7 2.7 61 319-381 27-92 (115)
150 2kvi_A Nuclear polyadenylated 92.3 0.12 4.1E-06 42.0 4.2 64 319-390 12-76 (96)
151 1fxl_A Paraneoplastic encephal 92.3 0.041 1.4E-06 47.9 1.4 61 319-380 90-154 (167)
152 2cqd_A RNA-binding region cont 92.3 0.11 3.6E-06 43.7 3.9 60 319-378 19-81 (116)
153 2cqh_A IGF-II mRNA-binding pro 92.3 0.041 1.4E-06 44.3 1.3 56 319-378 10-66 (93)
154 2hvz_A Splicing factor, argini 92.3 0.038 1.3E-06 45.2 1.1 59 319-380 2-61 (101)
155 1u6f_A Tcubp1, RNA-binding pro 92.3 0.089 3.1E-06 45.5 3.5 62 318-380 43-108 (139)
156 2kt5_A RNA and export factor-b 92.2 0.098 3.4E-06 44.5 3.7 60 319-379 37-99 (124)
157 1sjq_A Polypyrimidine tract-bi 92.1 0.073 2.5E-06 45.5 2.7 57 319-378 18-74 (105)
158 2hgm_A HNRPF protein, heteroge 92.0 0.14 4.8E-06 44.9 4.5 66 319-389 44-113 (126)
159 1x4g_A Nucleolysin TIAR; struc 92.0 0.066 2.3E-06 44.5 2.3 59 319-380 27-85 (109)
160 1wel_A RNA-binding protein 12; 92.0 0.12 3.9E-06 44.2 3.8 61 319-380 27-90 (124)
161 2cq4_A RNA binding motif prote 92.0 0.14 4.7E-06 42.8 4.3 62 317-379 25-89 (114)
162 2nlw_A Eukaryotic translation 91.8 0.068 2.3E-06 44.4 2.1 61 319-380 17-85 (105)
163 1iqt_A AUF1, heterogeneous nuc 91.8 0.14 5E-06 39.1 3.9 56 320-375 2-60 (75)
164 1b7f_A Protein (SXL-lethal pro 91.8 0.18 6.1E-06 44.0 4.9 63 319-381 91-156 (168)
165 1s79_A Lupus LA protein; RRM, 91.7 0.17 5.8E-06 42.3 4.5 58 319-378 13-73 (103)
166 2xnq_A Nuclear polyadenylated 91.5 0.12 4.2E-06 42.3 3.4 57 319-380 24-81 (97)
167 2hzc_A Splicing factor U2AF 65 91.4 0.089 3E-06 41.5 2.3 58 319-380 8-76 (87)
168 3smz_A Protein raver-1, ribonu 91.4 0.41 1.4E-05 46.0 7.5 82 319-411 24-105 (284)
169 3r27_A HnRNP L, heterogeneous 91.3 0.11 3.9E-06 43.9 3.0 57 319-379 23-80 (100)
170 1rk8_A CG8781-PA, CG8781-PA pr 91.3 0.14 4.8E-06 46.0 3.8 61 319-380 74-138 (165)
171 3zzy_A Polypyrimidine tract-bi 91.1 0.16 5.4E-06 45.1 3.9 63 319-383 30-93 (130)
172 2ad9_A Polypyrimidine tract-bi 91.1 0.12 4.2E-06 45.0 3.1 56 319-378 33-89 (119)
173 3ns6_A Eukaryotic translation 91.0 0.084 2.9E-06 43.5 1.9 63 319-381 8-79 (100)
174 4f02_A Polyadenylate-binding p 90.8 0.14 4.7E-06 47.7 3.4 62 319-380 105-167 (213)
175 2dh8_A DAZ-associated protein 90.8 0.18 6.1E-06 41.4 3.7 58 319-378 18-79 (105)
176 1x4f_A Matrin 3; structural ge 90.8 0.29 9.9E-06 42.2 5.2 57 319-378 27-84 (112)
177 1x4d_A Matrin 3; structural ge 90.8 0.14 4.9E-06 43.2 3.2 58 319-379 17-75 (102)
178 2hgl_A HNRPF protein, heteroge 90.6 0.25 8.5E-06 43.8 4.7 59 319-379 46-110 (136)
179 3n9u_C Cleavage and polyadenyl 90.6 0.17 5.7E-06 45.7 3.6 62 318-379 56-122 (156)
180 2jwn_A Embryonic polyadenylate 90.6 0.15 5E-06 43.2 3.1 61 318-379 37-100 (124)
181 2qfj_A FBP-interacting repress 90.6 0.26 8.8E-06 44.9 5.0 61 319-380 127-191 (216)
182 2kn4_A Immunoglobulin G-bindin 90.5 0.2 7E-06 44.1 4.1 62 319-380 72-136 (158)
183 2cqg_A TDP-43, TAR DNA-binding 90.5 0.16 5.6E-06 41.5 3.2 56 319-375 17-76 (103)
184 1fj7_A Nucleolin RBD1, protein 90.5 0.054 1.9E-06 44.3 0.2 61 319-381 19-82 (101)
185 3md3_A Nuclear and cytoplasmic 90.3 0.13 4.5E-06 44.6 2.6 61 320-381 3-66 (166)
186 2rs2_A Musashi-1, RNA-binding 90.3 0.28 9.5E-06 41.1 4.5 59 318-376 26-87 (109)
187 1wf1_A RNA-binding protein RAL 90.2 0.11 3.9E-06 43.2 2.0 57 319-380 29-86 (110)
188 2lea_A Serine/arginine-rich sp 90.2 0.11 3.9E-06 45.4 2.1 63 318-380 48-113 (135)
189 2dha_A FLJ20171 protein; RRM d 90.2 0.14 5E-06 44.5 2.7 55 319-375 25-87 (123)
190 2hgn_A Heterogeneous nuclear r 90.2 0.19 6.4E-06 44.8 3.5 67 319-389 48-115 (139)
191 2i2y_A Fusion protein consists 90.1 0.16 5.5E-06 44.6 3.0 67 319-390 75-141 (150)
192 1x4b_A Heterogeneous nuclear r 90.1 0.26 9E-06 41.2 4.2 59 317-375 27-88 (116)
193 2dis_A Unnamed protein product 90.1 0.18 6.1E-06 41.6 3.1 59 319-377 10-73 (109)
194 2m2b_A RNA-binding protein 10; 90.0 0.15 5.1E-06 44.0 2.7 60 319-379 25-89 (131)
195 2a3j_A U1 small nuclear ribonu 90.0 0.14 4.8E-06 44.8 2.5 68 319-390 31-103 (127)
196 3tyt_A Heterogeneous nuclear r 90.0 0.11 3.8E-06 48.7 2.0 67 319-387 125-196 (205)
197 3egn_A RNA-binding protein 40; 90.0 0.098 3.3E-06 45.7 1.5 61 319-380 47-116 (143)
198 2diu_A KIAA0430 protein; struc 89.6 0.32 1.1E-05 41.2 4.3 60 320-390 12-77 (96)
199 2e44_A Insulin-like growth fac 89.6 0.093 3.2E-06 42.3 1.0 66 319-390 17-85 (96)
200 1sjr_A Polypyrimidine tract-bi 89.5 0.17 5.8E-06 46.7 2.7 62 319-382 48-110 (164)
201 2qfj_A FBP-interacting repress 89.4 0.35 1.2E-05 44.0 4.9 64 317-380 28-94 (216)
202 4f02_A Polyadenylate-binding p 89.3 0.25 8.7E-06 45.8 3.9 63 319-381 17-82 (213)
203 3sde_A Paraspeckle component 1 89.3 0.42 1.4E-05 45.8 5.6 61 318-381 23-83 (261)
204 2lcw_A RNA-binding protein FUS 88.9 0.07 2.4E-06 44.9 0.0 63 318-380 8-81 (116)
205 2g4b_A Splicing factor U2AF 65 89.1 0.23 7.8E-06 43.6 3.2 62 318-380 95-160 (172)
206 2ghp_A U4/U6 snRNA-associated 88.9 0.42 1.4E-05 46.1 5.2 85 318-411 42-127 (292)
207 1l3k_A Heterogeneous nuclear r 88.6 0.29 9.9E-06 43.9 3.6 59 317-375 13-74 (196)
208 2cjk_A Nuclear polyadenylated 88.4 0.33 1.1E-05 42.3 3.8 57 319-375 5-64 (167)
209 2f3j_A RNA and export factor b 88.3 0.62 2.1E-05 42.7 5.6 61 319-380 90-153 (177)
210 2e5i_A Heterogeneous nuclear r 88.1 0.46 1.6E-05 41.5 4.5 60 319-381 27-87 (124)
211 3q2s_C Cleavage and polyadenyl 87.6 0.28 9.5E-06 46.9 2.9 62 319-380 70-136 (229)
212 2g4b_A Splicing factor U2AF 65 87.5 0.25 8.7E-06 43.3 2.5 60 319-380 6-74 (172)
213 3sde_A Paraspeckle component 1 87.5 0.4 1.4E-05 46.0 4.0 69 319-389 98-171 (261)
214 3pgw_A U1-A; protein-RNA compl 87.3 0.31 1.1E-05 46.8 3.1 60 319-380 209-268 (282)
215 3pgw_S U1-70K; protein-RNA com 87.2 0.39 1.3E-05 50.5 4.0 61 319-380 104-168 (437)
216 2yh0_A Splicing factor U2AF 65 86.3 0.35 1.2E-05 43.4 2.7 62 319-380 116-180 (198)
217 2xs2_A Deleted in azoospermia- 86.2 0.17 5.9E-06 41.3 0.5 55 319-374 11-68 (102)
218 3pgw_A U1-A; protein-RNA compl 86.1 0.65 2.2E-05 44.5 4.7 61 319-380 11-76 (282)
219 2voo_A Lupus LA protein; RNA-b 86.0 0.66 2.3E-05 43.0 4.5 59 318-376 110-170 (193)
220 3tyt_A Heterogeneous nuclear r 85.9 0.64 2.2E-05 43.4 4.4 60 319-381 6-67 (205)
221 3tht_A Alkylated DNA repair pr 85.8 0.49 1.7E-05 48.5 3.8 66 319-387 20-87 (345)
222 2wbr_A GW182, gawky, LD47780P; 85.6 0.34 1.2E-05 40.5 2.1 55 320-378 10-65 (89)
223 3smz_A Protein raver-1, ribonu 85.5 0.87 3E-05 43.6 5.3 61 319-381 186-251 (284)
224 1qm9_A Polypyrimidine tract-bi 85.5 0.35 1.2E-05 43.7 2.3 65 319-390 122-190 (198)
225 2yh0_A Splicing factor U2AF 65 85.0 0.32 1.1E-05 43.7 1.8 60 319-380 6-74 (198)
226 2adc_A Polypyrimidine tract-bi 84.9 0.47 1.6E-05 44.5 2.9 60 319-381 153-214 (229)
227 1qm9_A Polypyrimidine tract-bi 84.5 0.4 1.4E-05 43.4 2.2 60 319-381 5-66 (198)
228 2py5_A DNA polymerase; protein 84.3 1.8 6E-05 47.2 7.5 67 142-238 6-72 (575)
229 1l3k_A Heterogeneous nuclear r 83.8 1.1 3.7E-05 40.0 4.8 57 319-375 106-165 (196)
230 2cjk_A Nuclear polyadenylated 83.2 0.59 2E-05 40.7 2.6 67 319-389 89-158 (167)
231 1x5p_A Negative elongation fac 82.9 1.2 4E-05 36.0 4.2 57 319-380 17-73 (97)
232 2adc_A Polypyrimidine tract-bi 82.8 0.54 1.8E-05 44.1 2.4 60 319-381 36-97 (229)
233 1wf0_A TDP-43, TAR DNA-binding 82.4 0.77 2.6E-05 36.3 2.9 50 319-371 7-57 (88)
234 3d2w_A TAR DNA-binding protein 81.1 1.5 5E-05 35.3 4.1 49 319-370 13-62 (89)
235 1fje_B Nucleolin RBD12, protei 80.2 0.27 9.1E-06 43.5 -0.7 60 319-380 15-77 (175)
236 2l08_A Regulator of nonsense t 78.9 3.8 0.00013 34.6 6.1 72 319-390 11-87 (97)
237 2d9o_A DNAJ (HSP40) homolog, s 78.1 2.6 8.8E-05 35.2 4.8 49 327-377 27-75 (100)
238 2ghp_A U4/U6 snRNA-associated 77.6 1.2 4.2E-05 42.8 3.0 61 319-380 212-277 (292)
239 3u1l_A PRE-mRNA-splicing facto 74.0 1.3 4.5E-05 43.1 2.1 60 319-381 136-204 (240)
240 2bz2_A Negative elongation fac 73.6 3.2 0.00011 35.4 4.3 63 319-389 41-103 (121)
241 2pe8_A Splicing factor 45; RRM 73.0 3.5 0.00012 34.4 4.3 52 330-381 26-81 (105)
242 1uw4_A UPF3X; nonsense mediate 71.5 2.4 8.3E-05 35.3 2.9 69 319-387 3-76 (91)
243 1bgx_T TAQ DNA polymerase; DNA 71.2 6.6 0.00022 44.7 7.3 78 212-300 340-420 (832)
244 1jmt_A Splicing factor U2AF 35 70.0 1.7 5.9E-05 36.2 1.7 26 355-380 67-92 (104)
245 3v4m_A Splicing factor U2AF 65 70.0 3.6 0.00012 34.3 3.7 33 356-391 59-91 (105)
246 3nmd_A CGMP dependent protein 69.4 3.3 0.00011 33.2 3.1 31 463-493 21-51 (72)
247 3s6e_A RNA-binding protein 39; 68.7 3.5 0.00012 35.2 3.4 32 356-390 55-86 (114)
248 1owx_A Lupus LA protein, SS-B, 67.8 7.2 0.00025 34.0 5.3 54 320-376 21-76 (121)
249 2dit_A HIV TAT specific factor 66.6 4 0.00014 33.9 3.3 45 332-380 41-88 (112)
250 3q7c_A Nucleoprotein; deddh ex 60.5 4.5 0.00016 38.8 2.7 150 140-302 55-220 (243)
251 4dzn_A Coiled-coil peptide CC- 59.1 10 0.00034 25.2 3.4 28 462-496 3-30 (33)
252 3ue2_A Poly(U)-binding-splicin 57.0 7.8 0.00027 33.2 3.4 57 331-390 39-102 (118)
253 3a7o_A Autophagy protein 16; c 49.5 17 0.00058 29.0 3.9 34 461-494 18-51 (75)
254 3mwp_A Nucleoprotein; structur 48.0 11 0.00039 39.8 3.5 149 140-301 389-553 (577)
255 2j8a_A Histone-lysine N-methyl 47.9 8.1 0.00028 34.6 2.1 55 319-374 4-74 (136)
256 3ikm_A DNA polymerase subunit 39.4 5.1 0.00017 46.7 -0.7 31 220-250 193-229 (1172)
257 1whv_A Poly(A)-specific ribonu 37.8 25 0.00085 29.8 3.4 48 324-376 22-69 (100)
258 3hnw_A Uncharacterized protein 35.1 35 0.0012 30.3 4.2 38 460-497 88-125 (138)
259 2q6q_A Spindle POLE BODY compo 33.9 23 0.00077 28.1 2.4 30 464-493 6-35 (74)
260 3ctr_A Poly(A)-specific ribonu 28.8 32 0.0011 29.3 2.6 49 324-377 12-60 (101)
261 3vmx_A Voltage-gated hydrogen 28.3 30 0.001 25.6 2.0 24 449-472 20-43 (48)
262 1xnl_A ASLV/FP, membrane prote 28.0 23 0.00077 23.2 1.2 10 457-466 18-27 (29)
263 4emc_A Monopolin complex subun 27.7 43 0.0015 31.5 3.6 36 460-495 26-61 (190)
264 3hnw_A Uncharacterized protein 27.0 56 0.0019 29.0 4.1 50 447-498 60-112 (138)
265 1use_A VAsp, vasodilator-stimu 26.8 62 0.0021 23.6 3.5 10 461-470 7-16 (45)
266 3he5_B Synzip2; heterodimeric 26.3 62 0.0021 23.4 3.4 36 460-495 9-44 (52)
267 3dxb_A Thioredoxin N-terminall 26.0 46 0.0016 30.5 3.5 33 356-391 175-207 (222)
268 1wlq_A Geminin; coiled-coil; 2 25.2 34 0.0012 28.1 2.1 45 447-491 24-68 (83)
269 2a1r_A Poly(A)-specific ribonu 20.7 38 0.0013 35.3 2.0 14 142-155 22-35 (430)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.98 E-value=3.8e-32 Score=256.20 Aligned_cols=158 Identities=33% Similarity=0.470 Sum_probs=136.7
Q ss_pred CCcEEEEEEeccCCCCCc-ccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhc
Q 010743 141 SNIMYAVDCEMVLCEDGS-EGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS 219 (502)
Q Consensus 141 ~~~~VaID~ETTGl~~g~-~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~ 219 (502)
..+||+|||||||+++.. .+|++|++|+.+|+++|++||+|..+|+++++++||||++||+++| ++.+|+.+|.+|+
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~-~~~~v~~~~~~~l- 81 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT-PFAVARLEILQLL- 81 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCE-EHHHHHHHHHHHH-
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCC-CHHHHHHHHHHHH-
Confidence 468999999999998765 4689999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCEEEEEchhhHHHHHcccCCC--ccchHHHhhh----hcC-CCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHH
Q 010743 220 NGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKY----VDE-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 292 (502)
Q Consensus 220 ~g~ILVGHnl~fDl~fLk~~~p~--vIDT~~L~r~----~~~-~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L 292 (502)
++++|||||+.||++||+..+|+ ++||+.+++. ..+ ..+++|+.||+.+||++++.++.+|+|++||++|++|
T Consensus 82 ~~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l 161 (189)
T 1wlj_A 82 KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161 (189)
T ss_dssp TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHH
Confidence 89999999999999999998886 7999987542 233 4789999999666899987422389999999999999
Q ss_pred HHHHHHhc
Q 010743 293 VLAIIERR 300 (502)
Q Consensus 293 ~~~~l~~g 300 (502)
|+++++..
T Consensus 162 ~~~l~~~~ 169 (189)
T 1wlj_A 162 YQISQRIR 169 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888643
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.96 E-value=2.1e-29 Score=236.63 Aligned_cols=156 Identities=25% Similarity=0.323 Sum_probs=137.1
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEc-CCcEE--EEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHH
Q 010743 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDR-NLKVT--IDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKK 216 (502)
Q Consensus 140 ~~~~~VaID~ETTGl~~g~~~I~rVsvVd~-~G~vi--~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~ 216 (502)
.+.+||+|||||||+++..++|++|++|.. +|+++ |++||+|..+|+++++++||||++||+++| ++.+|+.+|.+
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~-~~~~v~~~~~~ 88 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKR-SIEEVLPEFLG 88 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCC-BHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCC-CHHHHHHHHHH
Confidence 356899999999999987788999999985 67765 999999999999999999999999999999 99999999999
Q ss_pred hhcCCCEEEEEchhhHHHHHccc---------CCCccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCCCCHHHHHH
Q 010743 217 LLSNGTILVGHSLNNDLEVLKLD---------HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDAS 287 (502)
Q Consensus 217 fl~~g~ILVGHnl~fDl~fLk~~---------~p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~ 287 (502)
|+ ++.+|||||+.||+.||+.. ..+++||..+++...+..+++|..|| .+||++.. .+|+|++||+
T Consensus 89 ~l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~-~~~gi~~~---~~H~Al~Da~ 163 (186)
T 2p1j_A 89 FL-EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVV-EKLGLGPF---RHHRALDDAR 163 (186)
T ss_dssp HS-SSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHH-HHTTCCST---TCCHHHHHHH
T ss_pred HH-CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHH-HHcCCCCC---CCcCHHHHHH
Confidence 99 89999999999999999852 23579999999887766789999999 56899865 3799999999
Q ss_pred HHHHHHHHHHHhcc
Q 010743 288 AAMKLVLAIIERRV 301 (502)
Q Consensus 288 Ata~L~~~~l~~g~ 301 (502)
+|++||.++++.+.
T Consensus 164 ~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 164 VTAQVFLRFVEMMK 177 (186)
T ss_dssp HHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886654
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.96 E-value=1.7e-28 Score=230.80 Aligned_cols=154 Identities=21% Similarity=0.300 Sum_probs=134.4
Q ss_pred CcEEEEEEeccCCCC-----CcccEEEEEEEEc-CCcE---EEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHH
Q 010743 142 NIMYAVDCEMVLCED-----GSEGLVRLCVVDR-NLKV---TIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQK 212 (502)
Q Consensus 142 ~~~VaID~ETTGl~~-----g~~~I~rVsvVd~-~G~v---i~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~ 212 (502)
.+||+|||||||+++ ..++|++|++|.. +|.+ .|++||+|..+|+++++++||||++||.++| ++.+|+.
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~-~~~~v~~ 87 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKP-TFAEVAD 87 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSC-CHHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCC-CHHHHHH
Confidence 689999999999998 4468999999986 4554 3999999999999999999999999999999 9999999
Q ss_pred HHHHhhcCCCEEEEEchhhHHHHHccc-------CC------CccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCC
Q 010743 213 RMKKLLSNGTILVGHSLNNDLEVLKLD-------HP------RVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP 279 (502)
Q Consensus 213 ~l~~fl~~g~ILVGHnl~fDl~fLk~~-------~p------~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~ 279 (502)
+|.+|+ ++++|||||+.||+.||+.. .| .++||..+++..++..+++|..|| .+||++... ..+
T Consensus 88 ~~~~~l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~-~~~gi~~~~-~~~ 164 (194)
T 2gui_A 88 EFMDYI-RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALC-ARYEIDNSK-RTL 164 (194)
T ss_dssp HHHHHH-TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHH-HHTTCCCTT-CSS
T ss_pred HHHHHH-CCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHH-HHcCcCCCC-CCC
Confidence 999999 89999999999999999862 12 479999999988875568999999 668998752 137
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 010743 280 HNCLDDASAAMKLVLAIIER 299 (502)
Q Consensus 280 HdAleDA~Ata~L~~~~l~~ 299 (502)
|+|++||++|++||.+++++
T Consensus 165 H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 165 HGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp CCHHHHHHHHHHHHHHHTC-
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 99999999999999987754
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=7e-28 Score=227.74 Aligned_cols=159 Identities=18% Similarity=0.297 Sum_probs=136.2
Q ss_pred CCcEEEEEEeccCCCC----CcccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccccccCCCChhhhccCCCCHHH
Q 010743 141 SNIMYAVDCEMVLCED----GSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAE 209 (502)
Q Consensus 141 ~~~~VaID~ETTGl~~----g~~~I~rVsvVd~---~G~vi--~d~LVkP~~--~I~dy~T~ihGIT~e~L~~ap~~~~d 209 (502)
...||+||+||||+++ ..++|++|++|.. +|+++ |++||+|.. +|+++++++||||++||+++| ++.+
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~-~~~~ 87 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ 87 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCC-CHHH
Confidence 4579999999999986 4568999998765 68876 999999998 899999999999999999999 9999
Q ss_pred HHHHHHHhhcCCC-------EEEEEchhhHHH-HHccc-------CC----CccchHHHhhhhcC--CCCCCHHHHHHHH
Q 010743 210 IQKRMKKLLSNGT-------ILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDE--YRRPSLYNLCKSV 268 (502)
Q Consensus 210 V~~~l~~fl~~g~-------ILVGHnl~fDl~-fLk~~-------~p----~vIDT~~L~r~~~~--~~~~sL~~La~~~ 268 (502)
|+.+|.+|+ ++. ++||||+.||++ ||+.. .| +++||..+++..++ ..+++|..|| .+
T Consensus 88 v~~~~~~~l-~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~-~~ 165 (204)
T 1w0h_A 88 VLKKVIDWM-KLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EK 165 (204)
T ss_dssp HHHHHHHHH-HHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HH
T ss_pred HHHHHHHHH-HhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHH-HH
Confidence 999999999 444 599999999997 99752 23 47999999998776 2458999999 66
Q ss_pred cCCccCCCCCCCCHHHHHHHHHHHHHHHHHhcccCC
Q 010743 269 LGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNA 304 (502)
Q Consensus 269 Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g~~~~ 304 (502)
+|++.. +.+|+|++||++|++||.++++++....
T Consensus 166 ~gi~~~--~~~H~Al~Da~~ta~l~~~l~~~~~~~~ 199 (204)
T 1w0h_A 166 LGMDYD--GRPHCGLDDSKNIARIAVRMLQDGCELR 199 (204)
T ss_dssp TTCCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCCC--CCccCcHHHHHHHHHHHHHHHHCCCeee
Confidence 899875 2479999999999999999998876543
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.94 E-value=1.1e-27 Score=234.98 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=131.7
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcC-C-------------------cE--EEEEEEcCCCcccccccccCCCChh
Q 010743 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRN-L-------------------KV--TIDELVKPEKAVADYRSEITGLTAD 198 (502)
Q Consensus 141 ~~~~VaID~ETTGl~~g~~~I~rVsvVd~~-G-------------------~v--i~d~LVkP~~~I~dy~T~ihGIT~e 198 (502)
-..||+|||||||+++..++|++|++|..+ | ++ .|++||+|..+|+++++.+||||++
T Consensus 11 ~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~ 90 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHH
T ss_pred cceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHH
Confidence 357999999999999888899999999752 2 22 5999999999999999999999999
Q ss_pred hhccC--CCCHH-HHHHHHHHhhcCC----CEEEEEch-hhHHHHHccc-------CC----CccchHHHhhhhc-----
Q 010743 199 DLVGV--TCSLA-EIQKRMKKLLSNG----TILVGHSL-NNDLEVLKLD-------HP----RVIDTSLIFKYVD----- 254 (502)
Q Consensus 199 ~L~~a--p~~~~-dV~~~l~~fl~~g----~ILVGHnl-~fDl~fLk~~-------~p----~vIDT~~L~r~~~----- 254 (502)
||.++ | +|. +|+++|.+|+ ++ ++|||||+ .||+.||+.. .+ .++||+.+++.+.
T Consensus 91 ~l~~~g~p-~~~~ev~~~~~~fl-~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p 168 (242)
T 3mxm_B 91 ELEVQGRQ-RFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSP 168 (242)
T ss_dssp HHHHTTCC-CSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC
T ss_pred HHHhcCCC-chhHHHHHHHHHHH-hcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCc
Confidence 99999 7 896 9999999999 67 89999995 9999999863 11 3699999888643
Q ss_pred ---C-CCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 010743 255 ---E-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 299 (502)
Q Consensus 255 ---~-~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~ 299 (502)
+ ..+++|..||++++|++... +|+|++||++|++||+++.+.
T Consensus 169 ~~~~~~~~~~L~~l~~~~~gi~~~~---~H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 169 SGNGSRKSYSLGSIYTRLYWQAPTD---SHTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp ------CCCSHHHHHHHHHSSCCSS---TTSHHHHHHHHHHHHTSSHHH
T ss_pred cccCCCCCcCHHHHHHHHhCCCCCC---CcChHHHHHHHHHHHHHHHHH
Confidence 2 57899999998879999753 899999999999999876653
No 6
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=1.2e-26 Score=224.70 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=129.2
Q ss_pred CCCCcEEEEEEeccCCCCCcccEEEEEEEEcCC-----------------cE--EEEEEEcCCCcccccccccCCCChhh
Q 010743 139 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNL-----------------KV--TIDELVKPEKAVADYRSEITGLTADD 199 (502)
Q Consensus 139 ~~~~~~VaID~ETTGl~~g~~~I~rVsvVd~~G-----------------~v--i~d~LVkP~~~I~dy~T~ihGIT~e~ 199 (502)
....+||+|||||||+++..++|++|++|..++ ++ .|++||+|..+|+++++.+||||++|
T Consensus 7 ~~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~ 86 (238)
T 1y97_A 7 PRAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEG 86 (238)
T ss_dssp CCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred CccCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHH
Confidence 334689999999999998777899999997632 43 49999999999999999999999999
Q ss_pred h--ccCCCCH-HHHHHHHHHhhcCC----CEEEEEch-hhHHHHHccc-------CC---CccchHHHhhhhc-------
Q 010743 200 L--VGVTCSL-AEIQKRMKKLLSNG----TILVGHSL-NNDLEVLKLD-------HP---RVIDTSLIFKYVD------- 254 (502)
Q Consensus 200 L--~~ap~~~-~dV~~~l~~fl~~g----~ILVGHnl-~fDl~fLk~~-------~p---~vIDT~~L~r~~~------- 254 (502)
| .++| +| .+|+..|.+|+ .+ .+|||||+ .||+.||+.. .+ .++||..+++...
T Consensus 87 l~~~~~p-~f~~~v~~~l~~fl-~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~ 164 (238)
T 1y97_A 87 LARCRKA-GFDGAVVRTLQAFL-SRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGT 164 (238)
T ss_dssp HHHTTCC-CSCHHHHHHHHHHH-TTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----
T ss_pred HhhcCCC-ccHHHHHHHHHHHH-HhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccc
Confidence 9 5788 88 59999999999 44 89999999 9999999862 22 3799999998876
Q ss_pred --C-CCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 010743 255 --E-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 299 (502)
Q Consensus 255 --~-~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~ 299 (502)
+ ..+++|..||++++|++.. .+|+|++||++|++||.++++.
T Consensus 165 ~~p~~~~~~L~~l~~~~~gi~~~---~~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 165 RARGRQGYSLGSLFHRYFRAEPS---AAHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp ------CCSHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHTHHH
T ss_pred cCCCCCCCCHHHHHHHHhCCCCc---cCccHHHHHHHHHHHHHHHHHH
Confidence 4 4789999999657899875 3899999999999999988764
No 7
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.93 E-value=1.5e-26 Score=235.52 Aligned_cols=153 Identities=17% Similarity=0.207 Sum_probs=130.1
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCc----------------------EEEEEEEcCCCcccccccccCCCChhh
Q 010743 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLK----------------------VTIDELVKPEKAVADYRSEITGLTADD 199 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~----------------------vi~d~LVkP~~~I~dy~T~ihGIT~e~ 199 (502)
..||+||+||||+++..++|++|++|..++. ..|++||+|..+|+.+++.+||||++|
T Consensus 12 ~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e~ 91 (314)
T 3u3y_B 12 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAE 91 (314)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHHH
Confidence 5699999999999988889999999976321 358999999999999999999999999
Q ss_pred hccC--CCCH-HHHHHHHHHhhcCC----CEEEEEc-hhhHHHHHccc-------CC----CccchHHHhhh----hcC-
Q 010743 200 LVGV--TCSL-AEIQKRMKKLLSNG----TILVGHS-LNNDLEVLKLD-------HP----RVIDTSLIFKY----VDE- 255 (502)
Q Consensus 200 L~~a--p~~~-~dV~~~l~~fl~~g----~ILVGHn-l~fDl~fLk~~-------~p----~vIDT~~L~r~----~~~- 255 (502)
|+++ | +| .+|+++|.+|+ ++ ++||||| +.||+.||+.. .+ .++||+.+++. .++
T Consensus 92 l~~aG~P-~f~~ev~~~l~~fL-~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 92 LEVQGRQ-RFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHTTCC-BSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHhCCCC-CcHHHHHHHHHHHH-hcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 9999 7 89 79999999999 66 8999999 99999999863 11 26899886653 222
Q ss_pred ----CCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 010743 256 ----YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 299 (502)
Q Consensus 256 ----~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~ 299 (502)
..+++|..||++++|++.. .+|+|++||++|++||+++.+.
T Consensus 170 ~~~~~~~~~L~~L~~~l~gi~~~---~aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTRLYWQAPT---DSHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp ----CCCCSHHHHHHHHHSSCCS---CSSSHHHHHHHHHHHHHSSHHH
T ss_pred ccccCCCCCHHHHHHHhcCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 3789999999776999975 3899999999999999977764
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.93 E-value=8.7e-26 Score=217.60 Aligned_cols=156 Identities=20% Similarity=0.235 Sum_probs=133.4
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEc----CCcE----EEEEEEcC--CCcccccccccCCCChh-hhccCCCCHH
Q 010743 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDR----NLKV----TIDELVKP--EKAVADYRSEITGLTAD-DLVGVTCSLA 208 (502)
Q Consensus 140 ~~~~~VaID~ETTGl~~g~~~I~rVsvVd~----~G~v----i~d~LVkP--~~~I~dy~T~ihGIT~e-~L~~ap~~~~ 208 (502)
....||+||+||||+++..++|++|++|.. +|.+ .|++||+| ..+|+++++++||||++ |+++++ ++.
T Consensus 27 ~~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~-~~~ 105 (224)
T 2f96_A 27 RGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAV-QEE 105 (224)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCB-CHH
T ss_pred cCCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCC-CHH
Confidence 456899999999999988788999999975 5764 48999999 67999999999999997 599998 999
Q ss_pred HHHHHHHHhhc--------CCCEEEEEchhhHHHHHccc-----C---C----CccchHHHhhhhcCCCCCCHHHHHHHH
Q 010743 209 EIQKRMKKLLS--------NGTILVGHSLNNDLEVLKLD-----H---P----RVIDTSLIFKYVDEYRRPSLYNLCKSV 268 (502)
Q Consensus 209 dV~~~l~~fl~--------~g~ILVGHnl~fDl~fLk~~-----~---p----~vIDT~~L~r~~~~~~~~sL~~La~~~ 268 (502)
+|+.+|..++. ++.+|||||+.||+.||+.. . | +++||..+++..++ .++|..|| .+
T Consensus 106 ~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~-~~ 182 (224)
T 2f96_A 106 AALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKAC-QA 182 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHH-HH
T ss_pred HHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHH-HH
Confidence 99999999984 48999999999999999852 1 2 36999999998775 46999999 66
Q ss_pred cCCccCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 010743 269 LGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (502)
Q Consensus 269 Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g 300 (502)
+|+++.. ..+|+|++||++|++||.+++++.
T Consensus 183 ~gi~~~~-~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 183 AGMEFDN-REAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp TTCCCCT-TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCC-CCCCChHHHHHHHHHHHHHHHHHH
Confidence 7998742 248999999999999999888653
No 9
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=227.14 Aligned_cols=159 Identities=18% Similarity=0.305 Sum_probs=135.2
Q ss_pred CcEEEEEEeccCCC----CCcccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccccccCCCChhhhccCCCCHHHH
Q 010743 142 NIMYAVDCEMVLCE----DGSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEI 210 (502)
Q Consensus 142 ~~~VaID~ETTGl~----~g~~~I~rVsvVd~---~G~vi--~d~LVkP~~--~I~dy~T~ihGIT~e~L~~ap~~~~dV 210 (502)
..||+|||||||++ +..++|++|++|.. +|.++ |++||+|.. +|+++++.+||||++||+++| +|.+|
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap-~~~ev 156 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQV 156 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCC-CHHHH
Confidence 57999999999997 34568999999975 36665 999999998 999999999999999999999 99999
Q ss_pred HHHHHHhhcCC------CEEEEEchhhHHH-HHccc-------CC----CccchHHHhhhhcCCC--CCCHHHHHHHHcC
Q 010743 211 QKRMKKLLSNG------TILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDEYR--RPSLYNLCKSVLG 270 (502)
Q Consensus 211 ~~~l~~fl~~g------~ILVGHnl~fDl~-fLk~~-------~p----~vIDT~~L~r~~~~~~--~~sL~~La~~~Lg 270 (502)
+.+|.+|+.+. .++||||+.||+. ||+.. .| .++||..+++...+.. .++|..|| .++|
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~-~~~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HHTT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHH-HHcC
Confidence 99999999433 4999999999999 99762 23 3799999988776533 48999999 6789
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHHHHHhcccCC
Q 010743 271 YEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNA 304 (502)
Q Consensus 271 i~iq~~~~~HdAleDA~Ata~L~~~~l~~g~~~~ 304 (502)
++.. +.+|+|++||++|++||.++++.+....
T Consensus 236 i~~~--g~~H~Al~DA~ata~l~~~l~~~~~~~~ 267 (299)
T 1zbh_A 236 MDYD--GRPNCGLDDSKNIARIAVRMLQDGCELR 267 (299)
T ss_dssp CCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCC--CCCCChHHHHHHHHHHHHHHHHhCCcCC
Confidence 9875 2479999999999999999998765433
No 10
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.93 E-value=6e-26 Score=219.35 Aligned_cols=159 Identities=16% Similarity=0.278 Sum_probs=131.3
Q ss_pred CcEEEEEEeccCCCCCcc--cEEEEEEEEcC---CcEE--EEEEEcCCC--cccccccccCCCChhhhccCCCCHHHHHH
Q 010743 142 NIMYAVDCEMVLCEDGSE--GLVRLCVVDRN---LKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQK 212 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g~~--~I~rVsvVd~~---G~vi--~d~LVkP~~--~I~dy~T~ihGIT~e~L~~ap~~~~dV~~ 212 (502)
..||+||+||||+++..+ +|++|++|..+ |+++ |++||+|.. +|+++++.+||||++||+++| ++.+|++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~-~~~~v~~ 109 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLE 109 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCC-CHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCC-CHHHHHH
Confidence 579999999999998754 79999998653 4555 999999997 899999999999999999999 9999999
Q ss_pred HHHHhhcCCCEEEEEch--------hhHHHH-Hcc-------cCC----CccchHHHhhhhcC-CCCCCHHHHHHHHcCC
Q 010743 213 RMKKLLSNGTILVGHSL--------NNDLEV-LKL-------DHP----RVIDTSLIFKYVDE-YRRPSLYNLCKSVLGY 271 (502)
Q Consensus 213 ~l~~fl~~g~ILVGHnl--------~fDl~f-Lk~-------~~p----~vIDT~~L~r~~~~-~~~~sL~~La~~~Lgi 271 (502)
+|.+|+ ++.+|||||+ .||++| |+. ..| +++|+...++...+ ...++|..|| .++|+
T Consensus 110 ~f~~~l-~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~-~~~gi 187 (224)
T 2xri_A 110 RVDEWM-AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMN-KGLSL 187 (224)
T ss_dssp HHHHHH-HHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHH-HHTTC
T ss_pred HHHHHH-hhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHH-HHcCC
Confidence 999999 7899999999 999997 643 123 47895544433333 3458999999 67899
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Q 010743 272 EIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 305 (502)
Q Consensus 272 ~iq~~~~~HdAleDA~Ata~L~~~~l~~g~~~~i 305 (502)
+.. +.+|+|++||++|++||.+++++|....+
T Consensus 188 ~~~--~~~H~Al~DA~~ta~l~~~l~~~g~~~~i 219 (224)
T 2xri_A 188 QHI--GRPHSGIDDCKNIANIMKTLAYRGFIFKQ 219 (224)
T ss_dssp CCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCC--CCCcChHHHHHHHHHHHHHHHHcCCEEee
Confidence 874 24799999999999999999988866544
No 11
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.93 E-value=1.6e-25 Score=208.24 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=118.2
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEc--CCcEE---EEEEEcCCCcccccc-------cccCCCChhhhccCCCCHH
Q 010743 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDR--NLKVT---IDELVKPEKAVADYR-------SEITGLTADDLVGVTCSLA 208 (502)
Q Consensus 141 ~~~~VaID~ETTGl~~g~~~I~rVsvVd~--~G~vi---~d~LVkP~~~I~dy~-------T~ihGIT~e~L~~ap~~~~ 208 (502)
..+||+|||||||+++..++|++|++|.. +|.++ |++||+|..+|++++ +.+||||++||+++| ++.
T Consensus 4 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~-~~~ 82 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTM-GDR 82 (180)
T ss_dssp GGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCC-CHH
T ss_pred CCcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCC-CHH
Confidence 35799999999999998888999999865 45554 899999999877654 667999999999999 999
Q ss_pred HHHHHHHHhhcC-----CCEEEEEchhhHHHHHcccC--------CCccc--hHH-HhhhhcCCCCCCHHHHHHHHcCCc
Q 010743 209 EIQKRMKKLLSN-----GTILVGHSLNNDLEVLKLDH--------PRVID--TSL-IFKYVDEYRRPSLYNLCKSVLGYE 272 (502)
Q Consensus 209 dV~~~l~~fl~~-----g~ILVGHnl~fDl~fLk~~~--------p~vID--T~~-L~r~~~~~~~~sL~~La~~~Lgi~ 272 (502)
+|+.+|.+|+.+ .++|||||+.||+.||+..+ .+++| |.. +++...+. ++ .|++
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~-------~~---~~i~ 152 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE-------IL---DGFT 152 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGG-------GG---GGSC
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChH-------hh---hCCC
Confidence 999999999943 37999999999999998743 34688 763 66665441 11 2454
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 010743 273 IRKKGTPHNCLDDASAAMKLVLAIIERR 300 (502)
Q Consensus 273 iq~~~~~HdAleDA~Ata~L~~~~l~~g 300 (502)
. ..+|+|++||++|++||++++++-
T Consensus 153 ~---~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 153 K---QGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp C---CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred C---cCCcCcHHHHHHHHHHHHHHHHHh
Confidence 3 248999999999999999988753
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.92 E-value=1.6e-25 Score=227.07 Aligned_cols=158 Identities=14% Similarity=0.236 Sum_probs=135.0
Q ss_pred CcEEEEEEeccCCCCCcc---cEEEEEEEEc---CCcE----EEEEEEcCCCc--ccccccccCCCChhhhccCCCCHHH
Q 010743 142 NIMYAVDCEMVLCEDGSE---GLVRLCVVDR---NLKV----TIDELVKPEKA--VADYRSEITGLTADDLVGVTCSLAE 209 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g~~---~I~rVsvVd~---~G~v----i~d~LVkP~~~--I~dy~T~ihGIT~e~L~~ap~~~~d 209 (502)
..||+||+||||+++..+ +|++|++|.. +|++ .|++||+|... |+++++++||||++||+++| +|.+
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap-~~~e 97 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTAD-TFDV 97 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSC-BHHH
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCC-CHHH
Confidence 579999999999998765 8999999854 5665 38999999985 99999999999999999999 9999
Q ss_pred HHHHHHHhhcCCCEEEEEch------hhHH-HHHccc-------CC----CccchHHHhhhhcC-CC------CCCHHHH
Q 010743 210 IQKRMKKLLSNGTILVGHSL------NNDL-EVLKLD-------HP----RVIDTSLIFKYVDE-YR------RPSLYNL 264 (502)
Q Consensus 210 V~~~l~~fl~~g~ILVGHnl------~fDl-~fLk~~-------~p----~vIDT~~L~r~~~~-~~------~~sL~~L 264 (502)
|+.+|.+|+ ++.++||||+ .||+ .||+.. .| +++||..+++...+ .. +++|..|
T Consensus 98 vl~~f~~~l-~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l 176 (308)
T 3cg7_A 98 VYEQFQQWL-ITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKM 176 (308)
T ss_dssp HHHHHHHHH-HHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHH
T ss_pred HHHHHHHHH-HhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHH
Confidence 999999999 7888999999 9999 698742 23 36999999987765 22 6899999
Q ss_pred HHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHhcccCC
Q 010743 265 CKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNA 304 (502)
Q Consensus 265 a~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g~~~~ 304 (502)
+ .++|+++.. .+|+|++||++|++||.++++.+....
T Consensus 177 ~-~~~gi~~~~--~~HrAl~DA~ata~l~~~l~~~~~~~~ 213 (308)
T 3cg7_A 177 N-EYYDLPTIG--RAHDAMDDCLNIATILQRMINMGAKVT 213 (308)
T ss_dssp H-HHTTCCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred H-HHcCCCCCC--CCcCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9 788998753 369999999999999999998775443
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.92 E-value=8.2e-25 Score=212.02 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=135.0
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEc----CCcE----EEEEEEcC--CCcccccccccCCCChh-hhccCCCCHH
Q 010743 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDR----NLKV----TIDELVKP--EKAVADYRSEITGLTAD-DLVGVTCSLA 208 (502)
Q Consensus 140 ~~~~~VaID~ETTGl~~g~~~I~rVsvVd~----~G~v----i~d~LVkP--~~~I~dy~T~ihGIT~e-~L~~ap~~~~ 208 (502)
+...||+||+||||+++..++|++|++|.. +|.+ .|+.||+| ..+|+++++.+||||++ |+.++| ++.
T Consensus 35 ~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~-~~~ 113 (235)
T 3v9w_A 35 RGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAV-SGY 113 (235)
T ss_dssp TTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCB-CHH
T ss_pred cCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCC-CHH
Confidence 456899999999999988889999999975 5653 38999999 57899999999999999 999999 999
Q ss_pred HHHHHHHHhhc--------CCCEEEEEchhhHHHHHccc-----C---C----CccchHHHhhhhcCCCCCCHHHHHHHH
Q 010743 209 EIQKRMKKLLS--------NGTILVGHSLNNDLEVLKLD-----H---P----RVIDTSLIFKYVDEYRRPSLYNLCKSV 268 (502)
Q Consensus 209 dV~~~l~~fl~--------~g~ILVGHnl~fDl~fLk~~-----~---p----~vIDT~~L~r~~~~~~~~sL~~La~~~ 268 (502)
+|+.+|..|+. ++.++||||+.||+.||+.. . | .++||..+++...| .++|..|| .+
T Consensus 114 ~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--~~~L~~l~-~~ 190 (235)
T 3v9w_A 114 EALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKAC-QT 190 (235)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHH-HH
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--CCCHHHHH-HH
Confidence 99999999985 58999999999999999753 1 2 36899999998875 46999999 56
Q ss_pred cCCccCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 010743 269 LGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 301 (502)
Q Consensus 269 Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g~ 301 (502)
+|+++.. +.+|+|++||.+|++||.+++++..
T Consensus 191 ~gi~~~~-~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 191 AGMDFDS-TQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp HTCCCCT-TTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCC-CCCcChHHHHHHHHHHHHHHHHHHH
Confidence 7998753 2489999999999999999887543
No 14
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.91 E-value=7.7e-25 Score=207.22 Aligned_cols=144 Identities=16% Similarity=0.234 Sum_probs=115.1
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCc--EE---EEEEEcCCCcc----ccccccc---CCCChhhhccCCCCH
Q 010743 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLK--VT---IDELVKPEKAV----ADYRSEI---TGLTADDLVGVTCSL 207 (502)
Q Consensus 140 ~~~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~--vi---~d~LVkP~~~I----~dy~T~i---hGIT~e~L~~ap~~~ 207 (502)
.+.+||+|||||||+++..++|++|++|..+|. ++ |++||+|..+| ++|.+++ ||||++||+++| ++
T Consensus 7 ~~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p-~~ 85 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQV-TH 85 (194)
T ss_dssp -CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCC-CH
T ss_pred CCCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCC-CH
Confidence 456899999999999998889999999976555 33 78899999877 5555555 999999999999 99
Q ss_pred HHHHHHHHHhhcCCCE------EEEEchhhHHHHHcccCC--------CccchHHHhhhhcCCCCCCHHHHHHHHc----
Q 010743 208 AEIQKRMKKLLSNGTI------LVGHSLNNDLEVLKLDHP--------RVIDTSLIFKYVDEYRRPSLYNLCKSVL---- 269 (502)
Q Consensus 208 ~dV~~~l~~fl~~g~I------LVGHnl~fDl~fLk~~~p--------~vIDT~~L~r~~~~~~~~sL~~La~~~L---- 269 (502)
.+|+.+|.+|+ ++.+ |||||+.||+.||+..++ +.+|+..| ..|++.++
T Consensus 86 ~ev~~~~~~~l-~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~l------------~~l~~~~~p~~~ 152 (194)
T 2gbz_A 86 AQAEAQTVAFL-GEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTI------------KELARRWAPAVA 152 (194)
T ss_dssp HHHHHHHHHHH-TTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHHH------------HHHHHHHCGGGG
T ss_pred HHHHHHHHHHH-HHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHHH------------HHHHHHhCHHHH
Confidence 99999999999 7887 999999999999987543 35676533 23333322
Q ss_pred -CCccCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 010743 270 -GYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (502)
Q Consensus 270 -gi~iq~~~~~HdAleDA~Ata~L~~~~l~~g 300 (502)
+++. ..+|+|++||++|++||.++.++.
T Consensus 153 ~~i~~---~~~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 153 SGFAK---SSAHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp TTCCC---CSCCSHHHHHHHHHHHHHHHHTTS
T ss_pred hCCCC---CCCcccHHHHHHHHHHHHHHHHHh
Confidence 2332 248999999999999999888654
No 15
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.91 E-value=5.3e-25 Score=227.13 Aligned_cols=160 Identities=18% Similarity=0.310 Sum_probs=135.4
Q ss_pred CCcEEEEEEeccCCC----CCcccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccccccCCCChhhhccCCCCHHH
Q 010743 141 SNIMYAVDCEMVLCE----DGSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAE 209 (502)
Q Consensus 141 ~~~~VaID~ETTGl~----~g~~~I~rVsvVd~---~G~vi--~d~LVkP~~--~I~dy~T~ihGIT~e~L~~ap~~~~d 209 (502)
...||+|||||||++ +..++|++|++|.. +|.++ |++||+|.. +|+++++.+||||++||+++| +|.+
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap-~~~e 205 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ 205 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSE-EHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCC-CHHH
Confidence 368999999999995 34568999999975 45665 999999998 999999999999999999999 9999
Q ss_pred HHHHHHHhhcCC------CEEEEEchhhHHH-HHccc-------CC----CccchHHHhhhhcCCC--CCCHHHHHHHHc
Q 010743 210 IQKRMKKLLSNG------TILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDEYR--RPSLYNLCKSVL 269 (502)
Q Consensus 210 V~~~l~~fl~~g------~ILVGHnl~fDl~-fLk~~-------~p----~vIDT~~L~r~~~~~~--~~sL~~La~~~L 269 (502)
|+.+|..|+.+. .++||||+.||+. ||+.. .| .++||..+++...+.. .++|..|| .+|
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~-~~~ 284 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKL 284 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHH-HHT
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHH-HHc
Confidence 999999999433 5999999999999 99762 33 3699999988776533 48999999 678
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHHHHHhcccCC
Q 010743 270 GYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNA 304 (502)
Q Consensus 270 gi~iq~~~~~HdAleDA~Ata~L~~~~l~~g~~~~ 304 (502)
|++.. +.+|+|++||++|++||.++++.+....
T Consensus 285 gi~~~--g~~HrAl~DA~ata~ll~~ll~~~~~~~ 317 (349)
T 1zbu_A 285 GMDYD--GRPHCGLDDSKNIARIAVRMLQDGCELR 317 (349)
T ss_dssp TCCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 99875 2479999999999999999998765433
No 16
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.91 E-value=2.3e-24 Score=204.46 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=118.5
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCC--cEE---EEEEEc-CCC---ccccc---ccccCCCChhhhccCCCCH
Q 010743 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNL--KVT---IDELVK-PEK---AVADY---RSEITGLTADDLVGVTCSL 207 (502)
Q Consensus 140 ~~~~~VaID~ETTGl~~g~~~I~rVsvVd~~G--~vi---~d~LVk-P~~---~I~dy---~T~ihGIT~e~L~~ap~~~ 207 (502)
...+||+|||||||+++..++|++|++|-.+| .++ ++.+|+ |.. .++++ ++.+||||++|++++| ++
T Consensus 7 ~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p-~~ 85 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSV-DE 85 (186)
T ss_dssp CTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCC-CH
T ss_pred CCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCC-CH
Confidence 35689999999999999989999999995555 443 455786 542 23444 4456799999999999 99
Q ss_pred HHHHHHHHHhhc-----CCCEEEEEchhhHHHHHccc--------CCCccc--hHH-HhhhhcCCCCCCHHHHHHHHcCC
Q 010743 208 AEIQKRMKKLLS-----NGTILVGHSLNNDLEVLKLD--------HPRVID--TSL-IFKYVDEYRRPSLYNLCKSVLGY 271 (502)
Q Consensus 208 ~dV~~~l~~fl~-----~g~ILVGHnl~fDl~fLk~~--------~p~vID--T~~-L~r~~~~~~~~sL~~La~~~Lgi 271 (502)
++|+++|++|+. ++++|||||+.||++||+.. +.+++| |.. |+|..+|. +. -|+
T Consensus 86 ~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~----~~------~~~ 155 (186)
T 3tr8_A 86 VEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQ----IA------AAH 155 (186)
T ss_dssp HHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHH----HH------TTS
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCcc----cc------ccC
Confidence 999999999995 68999999999999999874 346899 887 88888761 11 155
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 010743 272 EIRKKGTPHNCLDDASAAMKLVLAIIERRV 301 (502)
Q Consensus 272 ~iq~~~~~HdAleDA~Ata~L~~~~l~~g~ 301 (502)
+.. .+|+|++||++|.+++.++.++-+
T Consensus 156 ~~~---~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 156 IKE---SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp CCC---CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred CCC---CCcChHHHHHHHHHHHHHHHHHhh
Confidence 543 489999999999999999998754
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.89 E-value=1.2e-23 Score=225.23 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=130.4
Q ss_pred CCCCcEEEEEEeccCCCCCcccEEEEEEEEc--CCcEE---EEEEEcCCCcc--cccccccCCCChhhhccCCCCHHHHH
Q 010743 139 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDR--NLKVT---IDELVKPEKAV--ADYRSEITGLTADDLVGVTCSLAEIQ 211 (502)
Q Consensus 139 ~~~~~~VaID~ETTGl~~g~~~I~rVsvVd~--~G~vi---~d~LVkP~~~I--~dy~T~ihGIT~e~L~~ap~~~~dV~ 211 (502)
+....||+||+||||+++..++|++|++|.. +|.++ |++||+|..+| ++..+.+||||++||.++|..+.+|+
T Consensus 6 ~~~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl 85 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFA 85 (482)
T ss_dssp -CCCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHH
Confidence 4467899999999999998889999999975 57665 99999999988 56788999999999999885679999
Q ss_pred HHHHHhhc-CCCEEEEEc-hhhHHHHHcccC---------------CCccchHHHhhhhc--------------CCCCCC
Q 010743 212 KRMKKLLS-NGTILVGHS-LNNDLEVLKLDH---------------PRVIDTSLIFKYVD--------------EYRRPS 260 (502)
Q Consensus 212 ~~l~~fl~-~g~ILVGHn-l~fDl~fLk~~~---------------p~vIDT~~L~r~~~--------------~~~~~s 260 (502)
.+|.+|++ .+++||||| +.||+.||+... ...+||..+++... +..+++
T Consensus 86 ~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~k 165 (482)
T 2qxf_A 86 ARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFR 165 (482)
T ss_dssp HHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCC
T ss_pred HHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCC
Confidence 99999994 399999999 999999998531 12578888877653 234789
Q ss_pred HHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 010743 261 LYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (502)
Q Consensus 261 L~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g 300 (502)
|..|| .++|++.. .+|+|++||++|++||.++.+..
T Consensus 166 L~~L~-~~~Gi~~~---~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 166 LEHLT-KANGIEHS---NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp HHHHH-HHTTCCCC------CTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHH-HHcCCCCC---CCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999 67899874 38999999999999999888654
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.96 E-value=7.2e-09 Score=113.71 Aligned_cols=142 Identities=20% Similarity=0.181 Sum_probs=104.6
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhcCC
Q 010743 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNG 221 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~~g 221 (502)
..+|+||+||||+++...+|+.|+++-.+|... ||.+.. .. + |+ .+.+ ++.++...|..|+ .+
T Consensus 26 ~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~---yip~~~---~~---~-~~-----~~~l-~~~~vl~~L~~~L-~d 88 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSFAIEPGVAA---YIPVAH---DY---L-DA-----PDQI-SRERALELLKPLL-ED 88 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEEEETTEEE---EEECCC---CS---T-TC-----CCCC-CHHHHHHHHHHHH-TC
T ss_pred CCeEEEEEecCCCCcccCceEEEEEEEcCCcEE---EEeccc---cc---c-cc-----cccc-CHHHHHHHHHHHH-cC
Confidence 368999999999987666799988885566543 452211 01 1 22 2344 6899999999999 55
Q ss_pred C--EEEEEchhhHHHHHccc---CCC-ccchHHHhhhhcC-CCCCCHHHHHHHHcCCccC-------CCCC---------
Q 010743 222 T--ILVGHSLNNDLEVLKLD---HPR-VIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIR-------KKGT--------- 278 (502)
Q Consensus 222 ~--ILVGHnl~fDl~fLk~~---~p~-vIDT~~L~r~~~~-~~~~sL~~La~~~Lgi~iq-------~~~~--------- 278 (502)
. ++||||+.||+.+|... .+. ++||..+++.+.+ ..+++|+.||+.|||.... .+..
T Consensus 89 ~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l 168 (605)
T 2kfn_A 89 EKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL 168 (605)
T ss_dssp TTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH
T ss_pred CCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH
Confidence 4 89999999999999763 233 7999999998887 5689999999888787531 1100
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhc
Q 010743 279 ---PHNCLDDASAAMKLVLAIIERR 300 (502)
Q Consensus 279 ---~HdAleDA~Ata~L~~~~l~~g 300 (502)
.|.|..||.+++.||..+...-
T Consensus 169 e~~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 169 EEAGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1458899999999999877654
No 19
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.79 E-value=4.2e-08 Score=93.25 Aligned_cols=153 Identities=16% Similarity=0.063 Sum_probs=94.7
Q ss_pred CCCCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEE--cCCCcccccccc--cCCCChhhhccCCCCHHHHHHH
Q 010743 138 TMTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELV--KPEKAVADYRSE--ITGLTADDLVGVTCSLAEIQKR 213 (502)
Q Consensus 138 ~~~~~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LV--kP~~~I~dy~T~--ihGIT~e~L~~ap~~~~dV~~~ 213 (502)
.+.+..-+.+|||+|+...+ .+|++|++|..+|..+|-..- .|. .+.++..+ +.++...-..... ++.++..+
T Consensus 18 ~p~~m~r~FlDTEFt~d~~~-~eLISIGlV~EdGrEFYav~~d~d~~-~~~~wVr~~Vlp~L~~~~~~~~~-s~~~i~~~ 94 (190)
T 4hec_A 18 GPGSMVRYFYDTEFIEDGHT-IELISIGVVAEDGREYYAVSTEFDPE-RAGSWVRTHVLPKLPPPASQLWR-SRQQIRLD 94 (190)
T ss_dssp ---CEEEEEEEEEEEECSSC-EEEEEEEEEETTSCEEEEEETTSCGG-GCCHHHHHHTGGGSCCTTSTTEE-CHHHHHHH
T ss_pred CCCceeEEEEeeeecCCCCC-CCEEEEEEEcCCCCEEEEEecCCChh-hCcHHHHhccccCCCCCcccccC-CHHHHHHH
Confidence 34456678999999984443 469999999999987554332 232 33444332 4565543333333 89999999
Q ss_pred HHHhhcCC----CEEEEEchhhHHHHHcccCCCccchHHHhhhhcCCCCCCHHHHHHHHcCCc-cC-CCCCCCCHHHHHH
Q 010743 214 MKKLLSNG----TILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYE-IR-KKGTPHNCLDDAS 287 (502)
Q Consensus 214 l~~fl~~g----~ILVGHnl~fDl~fLk~~~p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~-iq-~~~~~HdAleDA~ 287 (502)
|.+|+... ..|+||+..+|..+|........+. +...+.....|+.++ ...|.+ +. ..+.+|+||.||+
T Consensus 95 L~~FL~~~~~~~~eLwa~~~~yD~~~L~ql~g~m~~l----P~~~p~~~~dlr~~~-~~~g~~~lp~~~~~~H~AL~DAR 169 (190)
T 4hec_A 95 LEEFLRIDGTDSIELWAWVGAYDHVALCQLWGPMTAL----PPTVPRFTRELRQLW-EDRGCPRMPPRPRDVHDALVDAR 169 (190)
T ss_dssp HHHHTTTTSSCEEEEEESSCHHHHHHHHTTTSSGGGS----CTTSCSSCEEHHHHH-HHTTCCCCCC-----CCHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEecccccHHHHHHHhcccccC----CcccchhhHHHHHHH-HHcCCCCCCCCCCCCcCcHHHHH
Confidence 99999422 2599999999999997643322111 000112234566666 444443 11 1235799999999
Q ss_pred HHHHHHHHHHH
Q 010743 288 AAMKLVLAIIE 298 (502)
Q Consensus 288 Ata~L~~~~l~ 298 (502)
+.+..|+.+..
T Consensus 170 ~n~~~~~~~~~ 180 (190)
T 4hec_A 170 DQLRRFRLITS 180 (190)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999987653
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.77 E-value=4.7e-09 Score=117.07 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=99.3
Q ss_pred EEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhcCCCE
Q 010743 144 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTI 223 (502)
Q Consensus 144 ~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~~g~I 223 (502)
+||||+||||+++..+.|+.|.+++..+...+ ++.|. .+.+++..|..|+.++.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~--~~~p~-----------------------~i~~~l~~L~~~l~~~~~ 55 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYV--SYRPS-----------------------DFGAYLDALEAEVARGGL 55 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEE--EECGG-----------------------GHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEE--EEChH-----------------------HHHHHHHHHHHHHhcCCe
Confidence 58999999999987778999999886533222 22221 234566778887755688
Q ss_pred EEEEch-hhHHHHHccc----------CC--CccchHHHhhhhcC-CCCCCHHHHHHHHc-------CCcc-----C---
Q 010743 224 LVGHSL-NNDLEVLKLD----------HP--RVIDTSLIFKYVDE-YRRPSLYNLCKSVL-------GYEI-----R--- 274 (502)
Q Consensus 224 LVGHnl-~fDl~fLk~~----------~p--~vIDT~~L~r~~~~-~~~~sL~~La~~~L-------gi~i-----q--- 274 (502)
+||||+ .||+.+|... .+ .++||+.+++.+.+ ..+++|+.||+.|| |... .
T Consensus 56 kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~ 135 (698)
T 1x9m_A 56 IVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKD 135 (698)
T ss_dssp EEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHH
Confidence 999999 9999999643 23 37999999999887 66899999998776 4221 0
Q ss_pred --------CCCC--------------CCCHHHHHHHHHHHHHHHHHhcccCCC
Q 010743 275 --------KKGT--------------PHNCLDDASAAMKLVLAIIERRVDNAV 305 (502)
Q Consensus 275 --------~~~~--------------~HdAleDA~Ata~L~~~~l~~g~~~~i 305 (502)
.+.. .|.|..||.+++.||..+...-.+.+.
T Consensus 136 ~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 136 DFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred HhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1100 356889999999999998876544443
No 21
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.28 E-value=1e-06 Score=95.60 Aligned_cols=118 Identities=15% Similarity=0.030 Sum_probs=92.0
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhcCCC
Q 010743 143 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGT 222 (502)
Q Consensus 143 ~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~~g~ 222 (502)
+.+|||+||.+.+.-...++.|++-. .|. .| +| . .+...|..|+ .+.
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~-~~~-a~--~i----------------~------------~~l~~l~~~l-~d~ 57 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR-GGR-VH--RA----------------P------------EPYKALRDLK-EAR 57 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE-TTE-EE--EC----------------S------------SHHHHHTTCS-SBC
T ss_pred CceEEEEEecCCccCcccEEEEEEEc-CCE-EE--Ee----------------h------------hhHHHHHHHH-cCC
Confidence 56999999999997766788777763 443 22 11 0 2457889999 678
Q ss_pred EEEEEchhhHHHHHcccCCCccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 010743 223 ILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (502)
Q Consensus 223 ILVGHnl~fDl~fLk~~~p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g 300 (502)
++||||+.||+.......+.++||...+..+.+. +++|+.||++|++. + .|.|.+||.+++.||..+.+.-
T Consensus 58 ~kV~hn~K~Dl~~~Gi~~~~~fDT~laAyLL~p~-~~~L~~La~~yl~~-~-----gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 58 GLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPS-NTTPEGVARRYGGE-W-----TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp STTHHHHHHHHHHTTCCCCBCCCHHHHHHHHCTT-CCCHHHHHHHHTSC-C-----CSCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEeccHHHHHHcCCCCCcceeHHHHHHHhCCC-CCCHHHHHHHHhhh-h-----ccchHHHHHHHHHHHHHHHHHH
Confidence 8999999999992222233578999999998887 99999999999876 3 4789999999999998887654
No 22
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=98.01 E-value=3.3e-05 Score=81.64 Aligned_cols=132 Identities=17% Similarity=0.088 Sum_probs=87.3
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhc-
Q 010743 141 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS- 219 (502)
Q Consensus 141 ~~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~- 219 (502)
....|+||+|+++.......++-|.+-..++. .+|.|-.. + .+ ...|..++.
T Consensus 128 ~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~----~lidpl~l---------~---~~-----------l~~L~~lL~d 180 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRSFLGLTCLMQISTRTED----FIIDTLEL---------R---SD-----------MYILNESLTD 180 (428)
T ss_dssp TCSEEEEEEEEECTTCSSCEEEEEEEECSSCE----EEEETTTT---------G---GG-----------GGGGHHHHTC
T ss_pred cCCeEEEEEEecCCCCCCCeEEEEEEEeCCcE----EEEEeccc---------h---hh-----------HHHHHHHHcC
Confidence 35799999999988765545555555544432 24444321 0 11 123445552
Q ss_pred CCCEEEEEchhhHHHHHccc----CCCccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCC-------------CCH
Q 010743 220 NGTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP-------------HNC 282 (502)
Q Consensus 220 ~g~ILVGHnl~fDl~fLk~~----~p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~-------------HdA 282 (502)
.+-+-||||+.+|+.+|... ...+.||...+..+.. ..++|..|++.|||+.+..+... +-|
T Consensus 181 p~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~-~~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YA 259 (428)
T 3saf_A 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL-GRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYA 259 (428)
T ss_dssp TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTC-SCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHH
T ss_pred CCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCC-CCCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHH
Confidence 34567999999999999632 2347899887776654 46899999999999987642111 225
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010743 283 LDDASAAMKLVLAIIERR 300 (502)
Q Consensus 283 leDA~Ata~L~~~~l~~g 300 (502)
..||.++..||..+...-
T Consensus 260 A~DA~~ll~L~~~L~~~L 277 (428)
T 3saf_A 260 RDDTHYLLYIYDKMRLEM 277 (428)
T ss_dssp HHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999998876543
No 23
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=97.95 E-value=6.7e-05 Score=75.36 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=106.7
Q ss_pred CcEEEEEEeccCCCCCc--------c-------------cEEEEEEE--EcCCc-----EE--EEEEEcCCCcccc-ccc
Q 010743 142 NIMYAVDCEMVLCEDGS--------E-------------GLVRLCVV--DRNLK-----VT--IDELVKPEKAVAD-YRS 190 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g~--------~-------------~I~rVsvV--d~~G~-----vi--~d~LVkP~~~I~d-y~T 190 (502)
.+|||||+|++|+.... + .|+++++. +.+|+ .. |+-++.|...+-. ...
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~SI 113 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 113 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccccHHHH
Confidence 46999999999984210 0 36666654 55554 22 4445666553321 111
Q ss_pred ---ccCCCChhhhccCCCCHHHHHHHHHH---hhcCCCEEEEEchhhHHHHHcc--------------------cCCCcc
Q 010743 191 ---EITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKL--------------------DHPRVI 244 (502)
Q Consensus 191 ---~ihGIT~e~L~~ap~~~~dV~~~l~~---fl~~g~ILVGHnl~fDl~fLk~--------------------~~p~vI 244 (502)
+-|||.-.......++..+..+.+.. .+..+...|.|+..+|+.+|-. ..|.+.
T Consensus 114 ~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vY 193 (285)
T 4gmj_B 114 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 193 (285)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhh
Confidence 23788777776555555554444432 3346777888888899988743 146689
Q ss_pred chHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Q 010743 245 DTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 305 (502)
Q Consensus 245 DT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g~~~~i 305 (502)
||-.|.+.... .+.+|..|| ..||++-- +..|.|-.||..|+..|.++.+..++..+
T Consensus 194 D~K~l~~~~~~-l~ggL~~lA-~~L~v~r~--g~~HqAGsDSllT~~~F~kl~~~~f~~~~ 250 (285)
T 4gmj_B 194 DVKYLMKSCKN-LKGGLQEVA-EQLELERI--GPQHQAGSDSLLTGMAFFKMREMFFEDHI 250 (285)
T ss_dssp EHHHHGGGSTT-CCSCHHHHH-HHTTCCCC--SCTTSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHhccc-cCChHHHHH-HhCCCCCC--CCCCcchhHHHHHHHHHHHHHHHHhcCCc
Confidence 99998887654 456899999 67888732 45899999999999999999876655433
No 24
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.86 E-value=2.6e-05 Score=87.92 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=98.7
Q ss_pred CCcEEEEEEeccC---CCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHh
Q 010743 141 SNIMYAVDCEMVL---CEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 217 (502)
Q Consensus 141 ~~~~VaID~ETTG---l~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~f 217 (502)
+.++++||+||+| .++..+.|+.|++++.++..++.. .+|....+...+ +-.+.+..|.++
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~---------------~~i~~~~v~~~~-~E~~LL~~f~~~ 197 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITW---------------KKIDLPYVDVVS-TEKEMIKRFLRV 197 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEES---------------SCCCCSSEEECS-CHHHHHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEee---------------ccccccceEEcC-CHHHHHHHHHHH
Confidence 5789999999998 555677899999987766543310 112223355566 778889999988
Q ss_pred hcC--CCEEEEEch-hhHHHHHccc-------C-----------------------CC-ccchHHHhhhhcCCCCCCHHH
Q 010743 218 LSN--GTILVGHSL-NNDLEVLKLD-------H-----------------------PR-VIDTSLIFKYVDEYRRPSLYN 263 (502)
Q Consensus 218 l~~--g~ILVGHnl-~fDl~fLk~~-------~-----------------------p~-vIDT~~L~r~~~~~~~~sL~~ 263 (502)
+.. -.+|||||. .||+.+|... . .+ .+|+..+++......+++|++
T Consensus 198 i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~ 277 (775)
T 1qht_A 198 VREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEA 277 (775)
T ss_dssp HHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHH
T ss_pred HHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHH
Confidence 843 349999997 6899988541 0 12 478888888766677899999
Q ss_pred HHHHHcCCccCC-----------CCC-----CCCHHHHHHHHHHHHHHHH
Q 010743 264 LCKSVLGYEIRK-----------KGT-----PHNCLDDASAAMKLVLAII 297 (502)
Q Consensus 264 La~~~Lgi~iq~-----------~~~-----~HdAleDA~Ata~L~~~~l 297 (502)
+|+.+||..-.. ++. .+-++.||..+..|+..++
T Consensus 278 Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 278 VYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp HHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 998899985321 000 0124679999999986554
No 25
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=97.67 E-value=0.00015 Score=78.14 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHhhcCCCEEEEEchhhHHHHHcc-------------------cCCCccchHHHhhhh--cC-CCCCCHHH
Q 010743 206 SLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKL-------------------DHPRVIDTSLIFKYV--DE-YRRPSLYN 263 (502)
Q Consensus 206 ~~~dV~~~l~~fl~~g~ILVGHnl~fDl~fLk~-------------------~~p~vIDT~~L~r~~--~~-~~~~sL~~ 263 (502)
-|..|++.|. ..+.+|||||.-.|+.+|-. ..|.++||-.|+... .. ....+|..
T Consensus 264 Gfr~v~~~L~---~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~ 340 (507)
T 3d45_A 264 GFSRVIHAIA---NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAE 340 (507)
T ss_dssp BTHHHHHHHH---HHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHH
T ss_pred hHHHHHHHHH---hCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHH
Confidence 4555555555 37899999999999988854 247789999887652 11 35679999
Q ss_pred HHHHHcCC-----c-c----------CCCCCCCCHHHHHHHHHHHHHHHHHhcccCCCC-----CcchhhhHHHHhhhhc
Q 010743 264 LCKSVLGY-----E-I----------RKKGTPHNCLDDASAAMKLVLAIIERRVDNAVP-----LLQEDVAETERARLFL 322 (502)
Q Consensus 264 La~~~Lgi-----~-i----------q~~~~~HdAleDA~Ata~L~~~~l~~g~~~~i~-----l~~~~~~e~~l~~l~~ 322 (502)
|. ..|.. + | ...+..|.|--||+.|+.+|.++.........+ .......+.+++++..
T Consensus 341 l~-~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~~~~~~~~~~~~~~~~~l~~~~N~l~l 419 (507)
T 3d45_A 341 LE-KRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVSARSKLIEPFFNKLFL 419 (507)
T ss_dssp HH-HHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHCC---------CCSCSSSGGGTTEECC
T ss_pred HH-HHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhHHHhhheeeee
Confidence 99 55542 1 1 001347999999999999999877543210000 0000011122222222
Q ss_pred -------------------------CCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhc
Q 010743 323 -------------------------HRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVK 377 (502)
Q Consensus 323 -------------------------~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~ 377 (502)
.+.|+.+...+|.+.|..-..+.+... .-.+|+|+|++++.|+.+...+.
T Consensus 420 ~~~~d~~~i~l~g~d~~~~R~~vl~v~f~~~~~~~~i~~~fs~fg~v~V~wi-----ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 420 MRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI-----DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CSBSSCCSEESSSCCCCCCGGGEEEEECCTTCCHHHHHHHGGGGCCCEEEEC-----SSSEEEEECSCHHHHHHHHHHHT
T ss_pred eccCCCceeeCCCCCCCCCcCcEEEEeCCCCCCHHHHHHHHHhcCCEEEEEE-----cCCeEEEEECCHHHHHHHHHHHH
Confidence 223455555555544433222222211 13689999999999999999884
No 26
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.57 E-value=0.00048 Score=64.67 Aligned_cols=88 Identities=22% Similarity=0.160 Sum_probs=61.5
Q ss_pred HHHHHhhcC-CCEEEEEchhhHHHHHccc----CCCccchHHHhhhhcC-CCCCCHHHHHHHHcCCccCCC---------
Q 010743 212 KRMKKLLSN-GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKK--------- 276 (502)
Q Consensus 212 ~~l~~fl~~-g~ILVGHnl~fDl~fLk~~----~p~vIDT~~L~r~~~~-~~~~sL~~La~~~Lgi~iq~~--------- 276 (502)
..|..++.. +-+.||||+.+|+..|... ...+.|...++.++.+ ...++|..|++.+||..+..+
T Consensus 86 ~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~ 165 (208)
T 2e6m_A 86 QGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWS 165 (208)
T ss_dssp HHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTT
T ss_pred HHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCC
Confidence 346667733 3578999999999999762 2347895556655544 578999999999988766221
Q ss_pred C------CCCCHHHHHHHHHHHHHHHHHh
Q 010743 277 G------TPHNCLDDASAAMKLVLAIIER 299 (502)
Q Consensus 277 ~------~~HdAleDA~Ata~L~~~~l~~ 299 (502)
. ..+-|..||.++..||..+.+.
T Consensus 166 ~~~L~~~q~~YAa~Da~~~~~L~~~L~~~ 194 (208)
T 2e6m_A 166 NFPLTEDQKLYAATDAYAGLIIYQKLGNL 194 (208)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0112568999999999887654
No 27
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.55 E-value=0.001 Score=65.65 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=106.4
Q ss_pred CcEEEEEEeccCCCCC-----c----------------ccEEEEEE--EEcCCcE-----E--EEEEEcCCCcccc-cc-
Q 010743 142 NIMYAVDCEMVLCEDG-----S----------------EGLVRLCV--VDRNLKV-----T--IDELVKPEKAVAD-YR- 189 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g-----~----------------~~I~rVsv--Vd~~G~v-----i--~d~LVkP~~~I~d-y~- 189 (502)
.+|||||+|++|+... . -.|+++++ .+.+|+. . |+-+......+-. ..
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~Si 103 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 103 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHHH
Confidence 4799999999998521 0 02555555 4666652 2 3333333221111 01
Q ss_pred --cccCCCChhhhccCCCCHHHHHHHHHH---hhcCCCEEEEEchhhHHHHHcc--------------------cCCCcc
Q 010743 190 --SEITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKL--------------------DHPRVI 244 (502)
Q Consensus 190 --T~ihGIT~e~L~~ap~~~~dV~~~l~~---fl~~g~ILVGHnl~fDl~fLk~--------------------~~p~vI 244 (502)
-+-+||.-+......++..+..+.+.. .++.+-..|.|+-.+|+.+|=. ..|.++
T Consensus 104 ~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iy 183 (252)
T 2d5r_A 104 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 183 (252)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchh
Confidence 134788877777666666655555543 2335568999999999987743 246689
Q ss_pred chHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Q 010743 245 DTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 305 (502)
Q Consensus 245 DT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g~~~~i 305 (502)
||-.+.+...+ ...+|..|| ..||.+- . |..|.|-.||..|+..|.++.+..++..+
T Consensus 184 D~K~l~~~~~~-l~~gL~~la-~~L~v~r-~-g~~HqAGsDsllT~~~F~km~~~~f~~~~ 240 (252)
T 2d5r_A 184 DVKYLMKSCKN-LKGGLQEVA-EQLELER-I-GPQHQAGSDSLLTGMAFFKMREMFFEDHI 240 (252)
T ss_dssp EHHHHGGGCTT-CCSSHHHHH-HHHTCCC-C-SSTTSHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred hHHHHHHHhcc-cCCCHHHHH-HHcCCCc-c-CcccchhhhHHHHHHHHHHHHHHhcCCCC
Confidence 99999887654 356899999 6778763 2 46899999999999999999887665443
No 28
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.53 E-value=0.00089 Score=69.46 Aligned_cols=151 Identities=10% Similarity=0.024 Sum_probs=96.6
Q ss_pred CCcEEEEEEeccC--CC-C--CcccEEEEEEEEcCCcEE-EEEEEcCC-Cccccccc---------ccCCCChh---hh-
Q 010743 141 SNIMYAVDCEMVL--CE-D--GSEGLVRLCVVDRNLKVT-IDELVKPE-KAVADYRS---------EITGLTAD---DL- 200 (502)
Q Consensus 141 ~~~~VaID~ETTG--l~-~--g~~~I~rVsvVd~~G~vi-~d~LVkP~-~~I~dy~T---------~ihGIT~e---~L- 200 (502)
+.+++++|+||++ .. + ..+.|..|++++..+... .-.+|+++ ....++.. .+....+. .+
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~ 184 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVI 184 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCCeE
Confidence 4679999999998 11 1 134799999998765542 11346542 11111110 11111111 11
Q ss_pred -ccCCCCHHHHHHHHHHhhc--CCCEEEEEch-hhHHHHHcc---c------------CC--------------------
Q 010743 201 -VGVTCSLAEIQKRMKKLLS--NGTILVGHSL-NNDLEVLKL---D------------HP-------------------- 241 (502)
Q Consensus 201 -~~ap~~~~dV~~~l~~fl~--~g~ILVGHnl-~fDl~fLk~---~------------~p-------------------- 241 (502)
...+ +-.+.+.+|.+++. .-.||||||. .||+.+|.. . ..
T Consensus 185 v~~~~-~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~ 263 (388)
T 1noy_A 185 YMPFD-NERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSID 263 (388)
T ss_dssp EEEES-CHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEET
T ss_pred EEEcC-CHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEc
Confidence 2344 67789999999883 3479999998 789987632 0 01
Q ss_pred -C-ccchHHHhhhh-cC-CCCCCHHHHHHHHcCCccCCCCCCC-C----------------HHHHHHHHHHHHHHH
Q 010743 242 -R-VIDTSLIFKYV-DE-YRRPSLYNLCKSVLGYEIRKKGTPH-N----------------CLDDASAAMKLVLAI 296 (502)
Q Consensus 242 -~-vIDT~~L~r~~-~~-~~~~sL~~La~~~Lgi~iq~~~~~H-d----------------AleDA~Ata~L~~~~ 296 (502)
+ ++|+..+++.. .. ..+++|+++|+.+||..-. .| . ++.||..++.||.++
T Consensus 264 GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~----d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 264 GVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL----PYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp TSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC----CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC----CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 58888888883 44 7899999999889987532 13 2 578999999999763
No 29
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.47 E-value=0.0004 Score=66.40 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=63.8
Q ss_pred HHHHhhc-CCCEEEEEchhhHHHHHcccC----CCccchHHHhhhhcC---CCCCCHHHHHHHHcCCcc-CCC----C--
Q 010743 213 RMKKLLS-NGTILVGHSLNNDLEVLKLDH----PRVIDTSLIFKYVDE---YRRPSLYNLCKSVLGYEI-RKK----G-- 277 (502)
Q Consensus 213 ~l~~fl~-~g~ILVGHnl~fDl~fLk~~~----p~vIDT~~L~r~~~~---~~~~sL~~La~~~Lgi~i-q~~----~-- 277 (502)
.|.+|+. ++-+.|||++.+|+..|...+ ..++||..++....+ ....+|+.|++.+||.++ ... .
T Consensus 99 ~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~ 178 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWE 178 (206)
T ss_dssp HHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGG
T ss_pred HHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCC
Confidence 3556662 456789999999999997743 348999988766554 367899999999999998 210 0
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHH
Q 010743 278 ------TPHNCLDDASAAMKLVLAIIE 298 (502)
Q Consensus 278 ------~~HdAleDA~Ata~L~~~~l~ 298 (502)
.-+=|..||+++..||.++.+
T Consensus 179 ~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 179 KAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 123467899999999987653
No 30
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=97.44 E-value=0.00018 Score=78.90 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=91.0
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhc-CC
Q 010743 143 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS-NG 221 (502)
Q Consensus 143 ~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~-~g 221 (502)
.-.+||+||++.++-...++.|++-...+ . .||.+. . ..+...|..++. .+
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~--a--~yIp~~----~--------------------~~~l~~Lk~lLed~~ 81 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHG--R--FFLRPE----T--------------------ALADPQFVAWLGDET 81 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTE--E--EEECHH----H--------------------HTTCHHHHHHHTCTT
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCc--e--EEEccc----h--------------------hhHHHHHHHHHhCCC
Confidence 35699999999998776788888776543 1 344211 0 112355777772 33
Q ss_pred CEEEEEchhhHHHHHccc---CC-CccchHHHhhhhcC-CCCCCHHHHHHHHcCCccCCC------C----------CCC
Q 010743 222 TILVGHSLNNDLEVLKLD---HP-RVIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKK------G----------TPH 280 (502)
Q Consensus 222 ~ILVGHnl~fDl~fLk~~---~p-~vIDT~~L~r~~~~-~~~~sL~~La~~~Lgi~iq~~------~----------~~H 280 (502)
...||||+.+|+.+|... .+ .+.||...+..+.+ ..+++|+.||..|||..+... + ..+
T Consensus 82 i~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~ 161 (592)
T 3pv8_A 82 KKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAE 161 (592)
T ss_dssp SEEEESSHHHHHHHHHHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHH
T ss_pred CeEEEechHHHHHHHHHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHH
Confidence 589999999999999753 22 36899988888887 568999999999999876320 0 012
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 010743 281 NCLDDASAAMKLVLAIIER 299 (502)
Q Consensus 281 dAleDA~Ata~L~~~~l~~ 299 (502)
-|.+||.++..||..+...
T Consensus 162 YAa~DA~~l~~L~~~L~~~ 180 (592)
T 3pv8_A 162 HLVRKAAAIWELERPFLDE 180 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3568999999999877654
No 31
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.36 E-value=0.0017 Score=66.87 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=85.2
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhcC-
Q 010743 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSN- 220 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~~- 220 (502)
..+|+||+|+++.......++-|.+-..+ . + .+|.|. .+ +. ...|..++..
T Consensus 22 ~~~va~D~E~~~~~~~~~~l~liqla~~~-~-~--~lid~~-----------~l------~~-------~~~L~~ll~d~ 73 (375)
T 1yt3_A 22 FPAIALDTEFVRTRTYYPQLGLIQLFDGE-H-L--ALIDPL-----------GI------TD-------WSPLKAILRDP 73 (375)
T ss_dssp SSEEEEEEEEECCSCSSCEEEEEEEECSS-C-E--EEECGG-----------GC------SC-------CHHHHHHHHCT
T ss_pred CCeEEEEeeecCCCcCCCceEEEEEecCC-c-E--EEEeCC-----------CC------CC-------hHHHHHHHcCC
Confidence 47899999999876433345554443322 2 1 123321 11 01 2345666633
Q ss_pred CCEEEEEchhhHHHHHccc----CCCccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCC-------CCC------HH
Q 010743 221 GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT-------PHN------CL 283 (502)
Q Consensus 221 g~ILVGHnl~fDl~fLk~~----~p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~-------~Hd------Al 283 (502)
+-+.||||+.+|+.+|... ...+.||...+..+.+...++|..|++.|||..+.++.. .-. |.
T Consensus 74 ~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa 153 (375)
T 1yt3_A 74 SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAA 153 (375)
T ss_dssp TSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHH
T ss_pred CceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHH
Confidence 4568999999999999652 234799998887766556899999999999987654210 101 56
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010743 284 DDASAAMKLVLAIIERR 300 (502)
Q Consensus 284 eDA~Ata~L~~~~l~~g 300 (502)
.||.++..||..+...-
T Consensus 154 ~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 154 ADVWYLLPITAKLMVET 170 (375)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999998877654
No 32
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.26 E-value=0.0031 Score=64.47 Aligned_cols=162 Identities=15% Similarity=0.155 Sum_probs=108.4
Q ss_pred CCCCCcEEEEEEeccCCCCCc--------c-------------cEEEEEE--EEcCCcE-----E--EEEEEcCCCcccc
Q 010743 138 TMTSNIMYAVDCEMVLCEDGS--------E-------------GLVRLCV--VDRNLKV-----T--IDELVKPEKAVAD 187 (502)
Q Consensus 138 ~~~~~~~VaID~ETTGl~~g~--------~-------------~I~rVsv--Vd~~G~v-----i--~d~LVkP~~~I~d 187 (502)
.....+|||||+|++|+.... + .|+++++ .+.+|+. . |+-+......+-.
T Consensus 41 ~i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~ 120 (333)
T 2p51_A 41 LIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYA 120 (333)
T ss_dssp HTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCC
T ss_pred HHhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccccC
Confidence 345678999999999985220 1 2555555 4666652 2 3333333221111
Q ss_pred -cc---cccCCCChhhhccCCCCHHHHHHHHHH---hhcCCCEEEEEchhhHHHHHcc--------------------cC
Q 010743 188 -YR---SEITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKL--------------------DH 240 (502)
Q Consensus 188 -y~---T~ihGIT~e~L~~ap~~~~dV~~~l~~---fl~~g~ILVGHnl~fDl~fLk~--------------------~~ 240 (502)
.. -+-+||.-+......++..+..+.+.. .++.+-.+|.++-.+|+.+|=. ..
T Consensus 121 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~F 200 (333)
T 2p51_A 121 PESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYF 200 (333)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHC
Confidence 01 133788888777666677665555542 3345578899999999987732 14
Q ss_pred CCccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHhcccC
Q 010743 241 PRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDN 303 (502)
Q Consensus 241 p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g~~~ 303 (502)
|.++||-.|.+.... -..+|..|| ..||+.-. |..|.|-.||..|+..|.++.+..++.
T Consensus 201 P~iYD~K~l~~~~~~-l~ggL~~lA-~~L~v~Ri--g~~HqAGsDSlLT~~~F~kl~~~~f~~ 259 (333)
T 2p51_A 201 PKNYDIKYIMKSVLN-NSKGLQDIA-DDLQIHRI--GPQHQAGSDALLTARIFFEIRSRYFDG 259 (333)
T ss_dssp SSEEEHHHHHTTTTC-CCCCHHHHH-HHTTCCCC--SCTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHhcc-ccCCHHHHH-HHcCCCcc--CcchhhhhHHHHHHHHHHHHHHHhcCC
Confidence 668999988887654 346899999 77886632 468999999999999999998765543
No 33
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.23 E-value=0.0035 Score=63.00 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=102.6
Q ss_pred CCCCcEEEEEEeccCCCCC-----c---c-------------cEEEEEEE--EcCCcE------E--EEEEEcCCCcccc
Q 010743 139 MTSNIMYAVDCEMVLCEDG-----S---E-------------GLVRLCVV--DRNLKV------T--IDELVKPEKAVAD 187 (502)
Q Consensus 139 ~~~~~~VaID~ETTGl~~g-----~---~-------------~I~rVsvV--d~~G~v------i--~d~LVkP~~~I~d 187 (502)
....+|||||+|++|+... . + .|+++++. +.+|+. . |+-+......+-.
T Consensus 35 i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~ 114 (289)
T 1uoc_A 35 VSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMS 114 (289)
T ss_dssp TTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCC
T ss_pred HhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCcccccc
Confidence 4457899999999998421 0 0 37777765 555542 2 3333333221111
Q ss_pred -cc---cccCCCChhhhccCCCCHHHHHHHHHH---hhcCCCEEEEEchhhHHHHHcc--------------------cC
Q 010743 188 -YR---SEITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKL--------------------DH 240 (502)
Q Consensus 188 -y~---T~ihGIT~e~L~~ap~~~~dV~~~l~~---fl~~g~ILVGHnl~fDl~fLk~--------------------~~ 240 (502)
.. -+-+||.-+......++..+..+.+.. .++.+-..|.++-.+|+.+|=. ..
T Consensus 115 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~F 194 (289)
T 1uoc_A 115 TESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM 194 (289)
T ss_dssp HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhC
Confidence 00 134788877777665566554444432 2335568899999999987743 14
Q ss_pred CCccchHHHhhhhcCC--------------CCCCHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 010743 241 PRVIDTSLIFKYVDEY--------------RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 300 (502)
Q Consensus 241 p~vIDT~~L~r~~~~~--------------~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~Ata~L~~~~l~~g 300 (502)
|.+.||-.+.+..... .+.+|..|| ..||++.. |..|.|-.||..|+..|.++.+..
T Consensus 195 P~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA-~~L~v~r~--g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 195 PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLA-DELGLPRF--SIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp SSEEEHHHHHHHHTTTCC-------------CCSHHHHH-HHTTCCCC--GGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred ccceeHHHHHHHHHhccCcccccccccccccCCCHHHHH-HHcCCCcc--CcccccHHHHHHHHHHHHHHHHHH
Confidence 6689999888776431 356899999 77898643 468999999999999999888654
No 34
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=97.06 E-value=0.0031 Score=66.09 Aligned_cols=132 Identities=17% Similarity=0.078 Sum_probs=83.4
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhcC-
Q 010743 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSN- 220 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~~- 220 (502)
..+|+||+|+++.......++-|.+-. .+.+. +|.|- .+. . ....|..++..
T Consensus 106 ~~~vavDtE~~~~~~~~~~l~liQla~-~~~~y---lid~l-----------~l~-----~-------~l~~L~~lL~d~ 158 (410)
T 2hbj_A 106 TKEIAVDLEHHDYRSYYGIVCLMQIST-RERDY---LVDTL-----------KLR-----E-------NLHILNEVFTNP 158 (410)
T ss_dssp CSEEEEEEEEECSSSSSCEEEEEEEEC-SSCEE---EEETT-----------TTT-----T-------TGGGGHHHHTCT
T ss_pred CCceEEEeeecCCcCCCCcEEEEEEEE-CCcEE---EEech-----------hhh-----h-------hHHHHHHHHcCC
Confidence 478999999998753233344443333 22221 23221 110 0 12235556633
Q ss_pred CCEEEEEchhhHHHHHccc----CCCccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCC-------------CCHH
Q 010743 221 GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP-------------HNCL 283 (502)
Q Consensus 221 g~ILVGHnl~fDl~fLk~~----~p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~-------------HdAl 283 (502)
+-+.||||+.+|+.+|... ...+.||...+..+.+ .+++|..|++.|||..+.++... +-|.
T Consensus 159 ~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~-~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa 237 (410)
T 2hbj_A 159 SIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL-PRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAAR 237 (410)
T ss_dssp TSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTC-SCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHH
T ss_pred CceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCC-CccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHH
Confidence 3568999999999999652 2348999987776654 37999999999999877542110 1156
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 010743 284 DDASAAMKLVLAIIERRV 301 (502)
Q Consensus 284 eDA~Ata~L~~~~l~~g~ 301 (502)
.||.++..||..+...-.
T Consensus 238 ~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 238 ADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp HHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999988776543
No 35
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.003 Score=72.64 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=94.5
Q ss_pred CCCcEEEEEEeccCC-----CCCcccEEEEEEE-EcCCcE--EEEE-E-EcCCCcccccccccCCCChhhhccCCCCHHH
Q 010743 140 TSNIMYAVDCEMVLC-----EDGSEGLVRLCVV-DRNLKV--TIDE-L-VKPEKAVADYRSEITGLTADDLVGVTCSLAE 209 (502)
Q Consensus 140 ~~~~~VaID~ETTGl-----~~g~~~I~rVsvV-d~~G~v--i~d~-L-VkP~~~I~dy~T~ihGIT~e~L~~ap~~~~d 209 (502)
.+.++++||+||++. ++..+.|+.|+.+ ...|.. .... + +.+..+ +....+...+ +-.+
T Consensus 247 PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~----------~~~~~V~~~~-sE~e 315 (919)
T 3iay_A 247 APLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSP----------ITGSMIFSHA-TEEE 315 (919)
T ss_dssp CCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCC----------BTTBEEEEES-SHHH
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCC----------CCCCeEEECC-CHHH
Confidence 456899999999853 2345689999865 445531 1111 1 122111 2223455566 7889
Q ss_pred HHHHHHHhhc--CCCEEEEEch-hhHHHHHcc-------cC-----------------------------------CC-c
Q 010743 210 IQKRMKKLLS--NGTILVGHSL-NNDLEVLKL-------DH-----------------------------------PR-V 243 (502)
Q Consensus 210 V~~~l~~fl~--~g~ILVGHnl-~fDl~fLk~-------~~-----------------------------------p~-v 243 (502)
++..|.+++. .-.||||||+ .||+.+|-. .. .+ +
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 9999999883 3489999998 699999832 10 01 3
Q ss_pred cchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCCC-------------------CHHHHHHHHHHHHHHH
Q 010743 244 IDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPH-------------------NCLDDASAAMKLVLAI 296 (502)
Q Consensus 244 IDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~H-------------------dAleDA~Ata~L~~~~ 296 (502)
+|+..+.+......+++|.++|+.+||..-.. -.| -++.||..+++||.++
T Consensus 396 lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~d--v~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQREYKLRSYTLNAVSAHFLGEQKED--VHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHHCCCSCCCHHHHHHHHHCCC--------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhhcCCCCCCHHHHHHHhcccCCCC--CCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777665588999999999999865321 111 1367999999998775
No 36
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=96.78 E-value=0.008 Score=68.48 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=93.5
Q ss_pred CCCcEEEEEEec-cCC---CCC----cccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHH
Q 010743 140 TSNIMYAVDCEM-VLC---EDG----SEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQ 211 (502)
Q Consensus 140 ~~~~~VaID~ET-TGl---~~g----~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~ 211 (502)
.+.++++||+|| +|. -|. .+.|+.|++++.+|...+ .+++|... +...+.+. ...+...+ +-.+++
T Consensus 188 p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~-~~~~~~i~---~~~v~~~~-~E~~LL 261 (847)
T 1s5j_A 188 PKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV-NEGSVKLD---GISVERFN-TEYELL 261 (847)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC-CCCCEEET---TEEEEEES-SHHHHH
T ss_pred CCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc-cccccCCC---CCeEEEeC-CHHHHH
Confidence 356899999999 743 121 257999999977775322 34555321 11111222 22345556 788999
Q ss_pred HHHHHhhcCCCEEEEEch-hhHHHHHccc---C-------C-------------C-ccchHHHhhh------hc-C-CCC
Q 010743 212 KRMKKLLSNGTILVGHSL-NNDLEVLKLD---H-------P-------------R-VIDTSLIFKY------VD-E-YRR 258 (502)
Q Consensus 212 ~~l~~fl~~g~ILVGHnl-~fDl~fLk~~---~-------p-------------~-vIDT~~L~r~------~~-~-~~~ 258 (502)
.+|.+++..-.+|||||. .||+.+|... + | + .+|...+++. .+ + ..+
T Consensus 262 ~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~s 341 (847)
T 1s5j_A 262 GRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNE 341 (847)
T ss_dssp HHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSS
T ss_pred HHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccccccc
Confidence 999999976679999997 6999998541 0 1 1 2566555432 11 1 468
Q ss_pred CCHHHHHHHHcCCccCCC------CC----CCCHHHHHHHHHHHH
Q 010743 259 PSLYNLCKSVLGYEIRKK------GT----PHNCLDDASAAMKLV 293 (502)
Q Consensus 259 ~sL~~La~~~Lgi~iq~~------~~----~HdAleDA~Ata~L~ 293 (502)
++|+.+|+.+||..-..- .. .+-++.||..+..|+
T Consensus 342 ysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 342 YNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 999999988998752110 00 011467999999985
No 37
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=96.56 E-value=0.022 Score=60.15 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=82.3
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhcCCC
Q 010743 143 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGT 222 (502)
Q Consensus 143 ~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~~g~ 222 (502)
.+|+||+|++....-...++-|.+-..++.. .||.| +. ..-.| . . ...|..++ .+.
T Consensus 39 ~~vavDtE~~~~~~~~~~l~liQla~~~~~~---~lid~---l~---~~~~~---------~-~----l~~L~~lL-~d~ 94 (440)
T 3cym_A 39 GSLAADAERASGFRYGHEDWLVQFKRDGAGI---GLLDP---QA---LAAAG---------A-D----WNDFNRAV-GDA 94 (440)
T ss_dssp EEEEEEEEECTTTSSSCCEEEEEEEEETTEE---EEECH---HH---HHHTT---------C-C----HHHHHHHH-TTC
T ss_pred CeEEEEeeecCCCCCCCCEEEEEEEECCCcE---EEEEc---CC---ccccc---------c-C----HHHHHHHH-CCC
Confidence 7899999998764322235544444334422 23332 00 00000 1 1 34577777 666
Q ss_pred EEEEEchhhHHHHHccc---CCCccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCC-------CCC------HHHHH
Q 010743 223 ILVGHSLNNDLEVLKLD---HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT-------PHN------CLDDA 286 (502)
Q Consensus 223 ILVGHnl~fDl~fLk~~---~p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~-------~Hd------AleDA 286 (502)
..|||++.+|+.+|+.. ...+.||...+..+.+ .+++|..|+..|+|....++.. .-. |..||
T Consensus 95 ~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa~lL~~-~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da 173 (440)
T 3cym_A 95 VWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGL-KRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDV 173 (440)
T ss_dssp EEEESSHHHHHHHHHHHTCCCCEEEEHHHHHHHTTC-SSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHH
T ss_pred CEEEEcCHHHHHHHHHcCCcCCceehHHHHHHHhCC-CCCCHHHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHH
Confidence 89999999999999632 2347999554444443 4899999999998976554210 112 67899
Q ss_pred HHHHHHHHHHHHh
Q 010743 287 SAAMKLVLAIIER 299 (502)
Q Consensus 287 ~Ata~L~~~~l~~ 299 (502)
.++..||..+...
T Consensus 174 ~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 174 ELLIELETKMRAE 186 (440)
T ss_dssp HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 38
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=96.48 E-value=0.031 Score=64.10 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=100.3
Q ss_pred CcEEEEEEeccCCC--C----CcccEEEEEEEEcCCcEE--EEEEEcCCCcccccccc---------cCCCChhhhccC-
Q 010743 142 NIMYAVDCEMVLCE--D----GSEGLVRLCVVDRNLKVT--IDELVKPEKAVADYRSE---------ITGLTADDLVGV- 203 (502)
Q Consensus 142 ~~~VaID~ETTGl~--~----g~~~I~rVsvVd~~G~vi--~d~LVkP~~~I~dy~T~---------ihGIT~e~L~~a- 203 (502)
.+.++||+|++.-+ | +.++|+.|++.|..+... |+.|-.|......|.+. -..+..+.+.+.
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 187 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKII 187 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeE
Confidence 57999999997521 1 245799999999866543 44444454444444331 123444444332
Q ss_pred ----CCCHHHHHHHHHHhhc--CCCEEEEEch-hhHHHHHcc--c----------------------------------C
Q 010743 204 ----TCSLAEIQKRMKKLLS--NGTILVGHSL-NNDLEVLKL--D----------------------------------H 240 (502)
Q Consensus 204 ----p~~~~dV~~~l~~fl~--~g~ILVGHnl-~fDl~fLk~--~----------------------------------~ 240 (502)
+ +-.+.+.+|.+++. .-.||+|||. .||+.+|.. . +
T Consensus 188 v~~f~-sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~ 266 (903)
T 3qex_A 188 YMPFD-NEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLF 266 (903)
T ss_dssp EEEES-SHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEET
T ss_pred EEEcC-CHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEe
Confidence 3 67789999999885 4589999998 689887721 0 0
Q ss_pred CC-ccchHHHhhhhc--CCCCCCHHHHHHHHcCCccCCCCCCCC----------------HHHHHHHHHHHHHH
Q 010743 241 PR-VIDTSLIFKYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHN----------------CLDDASAAMKLVLA 295 (502)
Q Consensus 241 p~-vIDT~~L~r~~~--~~~~~sL~~La~~~Lgi~iq~~~~~Hd----------------AleDA~Ata~L~~~ 295 (502)
.+ ++|+..+.+... ...+++|+.+|+.+||..-.. -|. ++.||..+++||.+
T Consensus 267 GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d---~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 267 GISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLK---YDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp TCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCC---CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccc---cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12 478888887632 367999999999999886431 111 25799999999976
No 39
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=96.39 E-value=0.0088 Score=63.12 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=66.7
Q ss_pred hhccCCCCHHHHHHHHHHhhcCCCEEEEEchhhHHHHHcc-------------------cCCCccchHHHhhhhc-C--C
Q 010743 199 DLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKL-------------------DHPRVIDTSLIFKYVD-E--Y 256 (502)
Q Consensus 199 ~L~~ap~~~~dV~~~l~~fl~~g~ILVGHnl~fDl~fLk~-------------------~~p~vIDT~~L~r~~~-~--~ 256 (502)
.+..+- -|..|++.|.+ .+.+|||||.-.|+-+|-. ..|.++||-.|+.... . .
T Consensus 263 ~l~~~~-Gfr~V~~~L~~---s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~ 338 (430)
T 2a1r_A 263 ELNDAV-GFSRVIHAIAN---SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDII 338 (430)
T ss_dssp HHHTTS-BTHHHHHHHHH---HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTC
T ss_pred HHHhhh-hHHHHHHHHHh---CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhcc
Confidence 344443 56666666554 6899999999999997743 2577999988875532 1 3
Q ss_pred CCCCHHHHHHHHcCCc-c-----C----------CCCCCCCHHHHHHHHHHHHHHHHHh
Q 010743 257 RRPSLYNLCKSVLGYE-I-----R----------KKGTPHNCLDDASAAMKLVLAIIER 299 (502)
Q Consensus 257 ~~~sL~~La~~~Lgi~-i-----q----------~~~~~HdAleDA~Ata~L~~~~l~~ 299 (502)
...+|..|. .+|... . . ..+..|.|--||+.|+.+|.++...
T Consensus 339 ~~~sL~~l~-~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 339 NNTSLAELE-KRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp SCCSHHHHH-HHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 457899998 444321 1 0 0134699999999999999988754
No 40
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=96.26 E-value=0.023 Score=67.02 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=91.7
Q ss_pred CCCcEEEEEEeccCCC--C--------CcccEEEEEEE-EcCCc-EEEEEEE-cCC-C-cccccc--cccCCCChhhhcc
Q 010743 140 TSNIMYAVDCEMVLCE--D--------GSEGLVRLCVV-DRNLK-VTIDELV-KPE-K-AVADYR--SEITGLTADDLVG 202 (502)
Q Consensus 140 ~~~~~VaID~ETTGl~--~--------g~~~I~rVsvV-d~~G~-vi~d~LV-kP~-~-~I~dy~--T~ihGIT~e~L~~ 202 (502)
.+.++++||+||++.. + ..+.|+.||.+ ...|. .....+| ... . .+.++. ..-.|+....+..
T Consensus 318 P~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 318 PAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp CCCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred CCceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 3568999999998641 1 23679999965 32221 1222222 111 1 111111 0111111112444
Q ss_pred CCCCHHHHHHHHHHhhcC--CCEEEEEch-hhHHHHHccc--------CC------------------------------
Q 010743 203 VTCSLAEIQKRMKKLLSN--GTILVGHSL-NNDLEVLKLD--------HP------------------------------ 241 (502)
Q Consensus 203 ap~~~~dV~~~l~~fl~~--g~ILVGHnl-~fDl~fLk~~--------~p------------------------------ 241 (502)
.+ +-.+++..|.+++.. -.||||||+ .||+.+|-.. .+
T Consensus 398 ~~-sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~ 476 (1193)
T 2gv9_A 398 FD-SEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVN 476 (1193)
T ss_dssp ES-SHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEET
T ss_pred cC-CHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEc
Confidence 45 678899999988853 359999998 6899887421 00
Q ss_pred -C-ccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCC-------------------CCHHHHHHHHHHHHHHH
Q 010743 242 -R-VIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP-------------------HNCLDDASAAMKLVLAI 296 (502)
Q Consensus 242 -~-vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~-------------------HdAleDA~Ata~L~~~~ 296 (502)
+ ++|+..+.+......+++|+.+|+.+||..-.. .. +-++.||..++.||.++
T Consensus 477 GRv~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~d--v~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 477 GMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKD--LSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp TBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCC--CCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEeehHHHHHHHHhccCCCCHHHHHHHHhccCCCC--CCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 356666665555578999999998899875321 11 12357888999988776
No 41
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=96.09 E-value=0.057 Score=61.11 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=88.2
Q ss_pred CCCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhh
Q 010743 139 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLL 218 (502)
Q Consensus 139 ~~~~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl 218 (502)
..+-++++||+|+.+ .| .|..|++-+..-..+| .+=.|+..- .+..-.+...+ +-.+++.+|.+++
T Consensus 150 ~p~lrilsfDIE~~~--~g--~i~~I~~~~~~~~~v~-~l~~~~~~~--------~~~~~~V~~f~-~E~~lL~~f~~~i 215 (786)
T 3k59_A 150 RPPLKWVSIDIETTR--HG--ELYCIGLEGCGQRIVY-MLGPENGDA--------SSLDFELEYVA-SRPQLLEKLNAWF 215 (786)
T ss_dssp CCCCCEEEEEEEECT--TS--CEEEEEEEETTEEEEE-EESSCCSCC--------TTCSSEEEEES-SHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEcC--CC--CEEEEEecCCCCCeEE-EEecCCCCC--------CCCCceEEEeC-CHHHHHHHHHHHH
Confidence 456799999999994 33 4888886543322222 111121110 11112333444 6678888988888
Q ss_pred cCC--CEEEEEch-hhHHHHHccc---------------------C------------CC-ccchHHHhhhh-cCCCCCC
Q 010743 219 SNG--TILVGHSL-NNDLEVLKLD---------------------H------------PR-VIDTSLIFKYV-DEYRRPS 260 (502)
Q Consensus 219 ~~g--~ILVGHnl-~fDl~fLk~~---------------------~------------p~-vIDT~~L~r~~-~~~~~~s 260 (502)
..- .||||||. .||+.+|... + .+ ++|...+.+.. ....+++
T Consensus 216 ~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~Sys 295 (786)
T 3k59_A 216 ANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFS 295 (786)
T ss_dssp HHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSCCS
T ss_pred HHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCCCC
Confidence 533 49999998 5899998420 0 01 36776666642 3478999
Q ss_pred HHHHHHHHcCCccCCCCCCCC----------------------HHHHHHHHHHHHHHH
Q 010743 261 LYNLCKSVLGYEIRKKGTPHN----------------------CLDDASAAMKLVLAI 296 (502)
Q Consensus 261 L~~La~~~Lgi~iq~~~~~Hd----------------------AleDA~Ata~L~~~~ 296 (502)
|+++|+.+||..-. .|+ ++.||..+++||.++
T Consensus 296 L~~Va~~~Lg~~K~----~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 296 LETVAQELLGEGKS----IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCc----ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999986522 233 267999999998764
No 42
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.03 E-value=0.0093 Score=48.98 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=47.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|.+...+.+...+......++|+|.|.+.++|..|++.|+|..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2fc8_A 17 TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 78 (102)
T ss_dssp SEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 58899999999999999999975444333222212236799999999999999999997743
No 43
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.77 E-value=0.032 Score=46.73 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=50.9
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee---eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCCCCCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQSKDSY 385 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~~~d~~ 385 (502)
..++..+||..++.++|..+|...-.|. +...+ .|. .++|+|.|.+.++|..|++.|.|..-....
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 3588999999999999999998754443 21222 233 679999999999999999999887755443
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=95.47 E-value=0.011 Score=49.09 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=47.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. ++ ..+. .|. .++|+|.|.+.++|..|++.|.|..
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 85 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV-AGHSLGYGFVNYVTAKDAERAINTLNGLR 85 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-SCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC-CCcccccEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999997644443 22 1222 233 6799999999999999999997654
No 45
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.41 E-value=0.021 Score=46.81 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.|.+..... ....++|+|.|.+.++|..|++.|.|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~ 76 (101)
T 2fc9_A 17 TLVLSNLSYSATEETLQEVFEKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKR 76 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHCSSCSEEECCBCSS-SCBCSEEEEECSSHHHHHHHHHHTSSE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCC-CCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 588999999999999999999855664432222 123579999999999999999999663
No 46
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.36 E-value=0.023 Score=44.92 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=47.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......+.|+|.|.+.++|..|++.|.|..
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 7 GLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 477889999999999999998754443 22222211226689999999999999999997764
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=95.25 E-value=0.014 Score=48.65 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=48.2
Q ss_pred HhhhhcCCCCCCCChHhhhccCCCCceeeeccc---c-ccCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 317 RARLFLHRIPTKVPSEELHGVIPGDFTIEAKAV---K-RIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 317 l~~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~---~-~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
++.|+..+||+.++.++|..+|...-.+++... + +..| ..+.|+|.|.+.++|..|++.|+|..
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 446889999999999999999987443332211 1 1122 36799999999999999999998754
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=95.23 E-value=0.03 Score=46.08 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=49.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKD 383 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d 383 (502)
.|+..+||..++.++|..+|...-.|. +...+. ....++|+|.|.+.++|..|++.|.|..-.+
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 17 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-SCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 588999999999999999998754443 222222 1226799999999999999999998776444
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.19 E-value=0.029 Score=46.10 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=48.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-... .|. .++|+|.|.+.++|..|++.|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2d9p_A 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRI 79 (103)
T ss_dssp CEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999998754553 221122 333 6799999999999999999998765
No 50
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.16 E-value=0.014 Score=48.72 Aligned_cols=62 Identities=23% Similarity=0.394 Sum_probs=47.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|............++|+|.|.+.++|..|++.|++..
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 85 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYD 85 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 58899999999999999999874444321111112236799999999999999999997643
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.032 Score=44.90 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=47.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......+.|+|.|.+.++|..|++.|+|..
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 82 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ 82 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe
Confidence 588999999999999999998754443 22222212235689999999999999999997643
No 52
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.00 E-value=0.044 Score=45.17 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=50.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 389 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~q 389 (502)
.|+..+||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|++.|.|..--+-.|++-
T Consensus 15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 58899999999999999988753233 222222211225799999999999999999998876544445543
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.99 E-value=0.024 Score=46.63 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-...-.+..++|+|.|.+.++|..|++.|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999998754443 22111112356799999999999999999997653
No 54
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=94.98 E-value=0.028 Score=44.05 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=46.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|.+.|+|..
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 67 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 67 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe
Confidence 367789999999999999997754443 21121212237899999999999999999997764
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.93 E-value=0.023 Score=45.94 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=46.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee----eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI----EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i----~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|++.|.|..
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 47788999999999999999774444 222221211236799999999999999999997654
No 56
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.91 E-value=0.042 Score=45.12 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|++.|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (103)
T 2cq0_A 17 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG 81 (103)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe
Confidence 588999999999999999998754443 21122212236799999999999999999997643
No 57
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=94.88 E-value=0.041 Score=48.38 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=63.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccC--CcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcceEEE
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIR--GDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVE 393 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~--g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk~v~ 393 (502)
.++..+||..++.++|..+|...-.|. +. ..+.+. ...+.|+|.|.+.++|..|.+.+.|..-.+..|++.+.-.
T Consensus 5 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~ 84 (175)
T 3nmr_A 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP 84 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc
Confidence 477889999999999999997754442 22 112211 2478999999999999999999998877766666655332
Q ss_pred EecCCC---CeEEEEEEeecc
Q 010743 394 FQSNAG---IIASLYVRKMVC 411 (502)
Q Consensus 394 ~~~~~g---~~~~~~vrkm~~ 411 (502)
-..... ....|||+.+-.
T Consensus 85 ~~~~~~~~~~~~~l~v~nl~~ 105 (175)
T 3nmr_A 85 ADSEKNNAVEDRKLFIGMISK 105 (175)
T ss_dssp CGGGCCSCGGGSEEEEESCCT
T ss_pred ccccccccCCCCeEEEcCCCC
Confidence 221111 235788877643
No 58
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.83 E-value=0.015 Score=49.39 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=47.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. ++-...-++..++|+|.|.+.++|..|++.|.|..
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~ 69 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML 69 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCE
Confidence 588899999999999999997744443 22111112346799999999999999999997754
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=94.78 E-value=0.028 Score=45.05 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=46.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeee-ccccccCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEA-KAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~-k~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|.- .-.+. .| ..++|+|.|.+.++|..|++.|.|..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMK 72 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999999999999999987444431 11121 23 36789999999999999999998755
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=94.76 E-value=0.015 Score=46.09 Aligned_cols=62 Identities=18% Similarity=0.319 Sum_probs=46.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||.+++.++|..+|...-.|. +...+...| ..+.|+|.|.+.++|..|.+.|.|..
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 477889999999999999997744443 212221123 46799999999999999999997754
No 61
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.70 E-value=0.024 Score=46.24 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=46.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|.-.....+ .++|+|.|.+.++|..|.+.|.|..
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~ 77 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFP 77 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCE
Confidence 5888999999999999999987555542222222 3489999999999999999997754
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.64 E-value=0.052 Score=43.70 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=46.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|++.|+|..
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 71 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 477889999999999999998754443 21222211236799999999999999999997744
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.53 E-value=0.029 Score=44.38 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=46.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|.+.|+|..
T Consensus 8 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (87)
T 3bs9_A 8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 72 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 478899999999999999997643442 21122212236799999999999999999997743
No 64
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.51 E-value=0.032 Score=44.84 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=45.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|... .|. +.-.....|. .+.|+|.|.+.++|..|.+ +.|..
T Consensus 12 ~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~ 73 (91)
T 2dgw_A 12 TVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREY 73 (91)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEE
T ss_pred EEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCce
Confidence 47889999999999999999875 442 2111112333 7799999999999999999 86643
No 65
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=94.44 E-value=0.042 Score=48.35 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=54.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.++..+||..++.++|..+|...-.|. +.-.+...|. .+.|+|.|.+.++|..|++.|.|..-.+-.|+|-+
T Consensus 97 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 97 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred eEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 588899999999999999997644443 1111111233 77899999999999999999999877766667654
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=94.42 E-value=0.043 Score=44.23 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=47.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccc-cccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~-~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-. ....|. .++|+|.|.+.++|..|.+.|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 81 (95)
T 2ek1_A 17 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP 81 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 588999999999999999998744442 1111 111333 6799999999999999999997754
No 67
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=94.40 E-value=0.03 Score=45.12 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=44.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCc--ee---eeccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDF--TI---EAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~--~i---~~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...- .| .+...+. .|. .++|+|.|.+.++|..|.+.++|..
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~-~g~~kG~afV~f~~~~~a~~Ai~~l~g~~ 69 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-NGQSKGFALVGVGSEASSKKLMDLLPKRE 69 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT-TCCEEEEEEECC-CHHHHHHHHHHGGGSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC-CCccCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 367789999999999999886643 23 1211122 333 7899999999999999999998754
No 68
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.39 E-value=0.041 Score=45.96 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---------eccc-cccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---------AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---------~k~~-~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-. .+..|. .++|+|.|.+.++|..|++.|+|..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 17 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 588999999999999999998755554 2211 111233 6799999999999999999997654
No 69
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=94.39 E-value=0.04 Score=45.02 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=47.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeee---------c--cccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEA---------K--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~---------k--~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|.. . ..+. .|. .++|+|.|.+.++|..|.+.|.|..
T Consensus 15 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 15 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-TGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-TCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-CCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 5889999999999999999987544432 1 1122 233 6799999999999999999998764
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.38 E-value=0.033 Score=44.83 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=47.0
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|++.|+|..
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 3588999999999999999997744442 22222211236799999999999999999996643
No 71
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.37 E-value=0.043 Score=44.55 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=46.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec-cccccCCc-ceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK-AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k-~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.|. +. ......|. .++|+|.|.+.++|..|.+.+.|.
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 588899999999999999998744442 11 11111333 689999999999999999999765
No 72
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=94.37 E-value=0.034 Score=45.16 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=45.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|.+.|.|.
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 467789999999999999998754443 22 12221123679999999999999999999764
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.37 E-value=0.055 Score=44.26 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=46.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|++.|.|..
T Consensus 14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 1x5s_A 14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 78 (102)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 58889999999999999888653233 332222212236799999999999999999997764
No 74
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.36 E-value=0.041 Score=44.95 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=46.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+ .|. .++|+|.|.+.++|..|++.|.|..
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 82 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMDGMT 82 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCE
Confidence 588899999999999999998754443 22222 233 6799999999999999999997643
No 75
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.31 E-value=0.029 Score=44.28 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=44.1
Q ss_pred hhcCCCCCCC------ChHhhhccCCCCceee-eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 320 LFLHRIPTKV------PSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 320 l~~~~iP~~~------~~eel~~~f~~~~~i~-~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
++..+||..+ +.++|..+|...-.|. +.-.+. .|. .++|+|.|.+.++|..|.+.|.|..
T Consensus 4 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 4 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-DGKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp EEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB-TTBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC-CCcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 5677899888 4588998887654443 221222 233 5799999999999999999998764
No 76
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.31 E-value=0.026 Score=45.95 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=46.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee----eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI----EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i----~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||.+++.++|..+|...-.| .+...+......++|+|.|.+.++|..|++.|+|..
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (99)
T 2div_A 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 76 (99)
T ss_dssp EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc
Confidence 58899999999999999888653332 222222211235789999999999999999997754
No 77
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=94.24 E-value=0.021 Score=46.24 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=46.4
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceeeeccccccCC-cceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
..++..+||..++.++|..+|...-.|... .. .| ..++|+|.|.+.++|..|++.|.|.
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~ 76 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV--SQ-DGKSKGIAYIEFKSEADAEKNLEEKQGA 76 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCE--EE-TTEEEEEEEEEESSHHHHHHHHHHTTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 358899999999999999999874344322 22 23 3679999999999999999999763
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.22 E-value=0.039 Score=46.29 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=46.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-...+ ...++|+|.|.+.++|..|.+.|.|..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~ 71 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFN 71 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 478899999999999999997654443 2111221 226799999999999999999997754
No 79
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.22 E-value=0.038 Score=44.79 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=44.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.|.-....+..|. +|+|.|.+.++|..|.+ +.|.
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~--~afV~f~~~~~a~~ai~-l~g~ 67 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV--FAIVEMGDVGAREAVLS-QSQH 67 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC--EEEEEESSHHHHHHHHT-CSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc--EEEEEECCHHHHHHHHh-cCCe
Confidence 5888999999999999999986544532222222344 99999999999999999 8654
No 80
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.19 E-value=0.041 Score=44.79 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=46.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|++.|.|..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (99)
T 1whw_A 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV 74 (99)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE
Confidence 578899999999999999997754443 22 222111225799999999999999999997643
No 81
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=94.15 E-value=0.037 Score=43.57 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=46.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccc-cccCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~-~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-. ....| ..+.|+|.|.+.++|..|.+.|.|..
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 73 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE
Confidence 478899999999999999997644443 2211 11122 26789999999999999999997754
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.14 E-value=0.034 Score=45.71 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=47.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|++.|.|..
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 588999999999999999998755553 22 112211236799999999999999999998754
No 83
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.10 E-value=0.029 Score=47.13 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=47.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.| .+...+ .+..++|+|.|.+.++|..|.+.|.|..
T Consensus 31 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 31 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE
T ss_pred EEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE
Confidence 58899999999999999999764444 222222 2356799999999999999999997754
No 84
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=94.09 E-value=0.052 Score=45.69 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......++++|.|.+.++|..|++.|.|..
T Consensus 42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp EEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 588999999999999999998754443 22222212236799999999999999999997644
No 85
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.08 E-value=0.041 Score=45.05 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=46.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|++.|.|.
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred EEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 588899999999999999998744442 2122121223679999999999999999999653
No 86
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.05 E-value=0.04 Score=45.01 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=45.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|.-....+ ..++|+|.|.+.++|..|++.|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~ 75 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMP 75 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999998754442111111 13589999999999999999998765
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=94.05 E-value=0.067 Score=46.58 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|++.|+|..
T Consensus 48 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~ 112 (129)
T 2kxn_B 48 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 112 (129)
T ss_dssp CBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999998754443 21222211236799999999999999999998754
No 88
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.05 E-value=0.048 Score=44.93 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=47.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCc-ceeEEEEeCCHHHHHHHHHhh-cCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENV-KGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~-~~~~~~~f~~~~ea~~af~~l-~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. +. ...+..|. .++|+|.|.+.++|..|++.| .|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 17 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred EEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 588999999999999999997754443 22 12011233 679999999999999999999 6654
No 89
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.02 E-value=0.025 Score=46.49 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=46.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. +...+. +..++|+|.|.+.++|..|.+.|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cqi_A 17 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRK 79 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCC
Confidence 588999999999999999996533342 222222 235699999999999999999997643
No 90
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.01 E-value=0.043 Score=45.13 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=47.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|++.|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 17 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 588999999999999999998754443 22 112111235689999999999999999997754
No 91
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=93.97 E-value=0.045 Score=45.12 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=47.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|++.|.|..
T Consensus 25 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 89 (106)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE
Confidence 588999999999999999997644442 21122211226799999999999999999998754
No 92
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.96 E-value=0.037 Score=45.07 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=42.1
Q ss_pred hhcCCCCCCCChHhhhccCCCCc-eee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhc
Q 010743 320 LFLHRIPTKVPSEELHGVIPGDF-TIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVK 377 (502)
Q Consensus 320 l~~~~iP~~~~~eel~~~f~~~~-~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~ 377 (502)
++..+||..++.++|..+|...- .|. ++ ..+......++|+|.|.+.++|..|++.+.
T Consensus 4 i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 4 VMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp EEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 67789999999999999996422 222 22 112212336799999999999999998764
No 93
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=93.95 E-value=0.059 Score=45.71 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. ++ -.+......++++|+|.+.++|..|++.|+|..
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~ 72 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS 72 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 478889999999999999998755553 22 112212237899999999999999999997754
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=93.89 E-value=0.052 Score=45.62 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccc-cccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~-~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-. .+..|. .++|+|.|.+.++|..|++.+.|..
T Consensus 28 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 92 (108)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 588999999999999999998754443 2211 111233 6799999999999999999998754
No 95
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=93.79 E-value=0.048 Score=42.02 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=42.2
Q ss_pred hhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 320 LFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 320 l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
++..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|.+ +.|.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~ 63 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH 63 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC
Confidence 56778999999999999987644442 22 222112236799999999999999987 6443
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.75 E-value=0.049 Score=44.59 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=47.6
Q ss_pred HhhhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 317 RARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 317 l~~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
...++..+||..++.++|..+|...-.| .+...+. .|. .++|+|.|.+.++|..|++.|.|..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-TGKPKGYGFCEYQDQETALSAMRNLNGRE 74 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT-TTEEEEEEEEECSCHHHHHHHHHHSSSBS
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC-CCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 3468899999999999999998764333 2222222 233 6799999999999999999997754
No 97
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.75 E-value=0.085 Score=45.85 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=57.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcceEEEEe
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQ 395 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk~v~~~ 395 (502)
.++..+||+.++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|.+.+.|..- .|++-+.-.-.
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v~~~~ 80 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---QTKTIKVSYAR 80 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEECC
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---CCceEEEEecC
Confidence 467889999999999999997744442 22 2221112367999999999999999999987543 35544422221
Q ss_pred cCCC--CeEEEEEEeecc
Q 010743 396 SNAG--IIASLYVRKMVC 411 (502)
Q Consensus 396 ~~~g--~~~~~~vrkm~~ 411 (502)
.... ....|||+.+-.
T Consensus 81 ~~~~~~~~~~l~v~nl~~ 98 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPK 98 (167)
T ss_dssp CCCGGGTTCEEEEESCCT
T ss_pred CCcccCCCCcEEECCCCC
Confidence 1111 134677776643
No 98
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.74 E-value=0.094 Score=42.66 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=45.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|++ +.|.
T Consensus 12 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~ 74 (99)
T 2dgs_A 12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH 74 (99)
T ss_dssp EEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC
Confidence 588899999999999999998754453 22 221211236799999999999999998 8554
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.72 E-value=0.046 Score=43.08 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=44.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhh-cCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENV-KGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l-~g~ 379 (502)
.++..+||..++.++|..+|...-.|.-....+ ..++|+|.|.+.++|..|.+.| .|.
T Consensus 14 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~ 72 (85)
T 2ytc_A 14 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKL 72 (85)
T ss_dssp CEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTC
T ss_pred EEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCe
Confidence 588899999999999999997644443211111 1348999999999999999998 543
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=93.70 E-value=0.054 Score=44.70 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. ++-.....|. .++|+|.|.+.++|..|++.|.|..
T Consensus 31 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 31 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP 94 (107)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999997754442 2211111333 7799999999999999999997754
No 101
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.60 E-value=0.071 Score=44.48 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=47.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. +.-...-.|. .++|+|.|.+.++|..|++.|.|..
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQL 80 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999998754443 2111111233 6799999999999999999997643
No 102
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.56 E-value=0.038 Score=46.17 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=45.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
+|+..+||..++.++|..+|...-.|....... . ++|+|+|.+.++|..|++.|+|..-
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~--~--g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--D--GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET--T--TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec--C--CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 588999999999999999998643443211111 1 6899999999999999999976543
No 103
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=93.53 E-value=0.048 Score=43.73 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=44.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|... .|. ..+-. ...++++|.|.+.++|..|.+.+.|..
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~-~v~--~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~ 64 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLKDY-DLK--YCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYS 64 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTCSS-CCC--CEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHhhC-CeE--EEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 47788999999999999999875 332 11110 123589999999999999999997653
No 104
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.52 E-value=0.063 Score=41.38 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=43.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVK 377 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~ 377 (502)
+++..+||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|.+.+.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 35678999999999999999764333 222222212236799999999999999999885
No 105
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.48 E-value=0.044 Score=44.14 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=44.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|...... +| +|+|.|.+.++|..|++.|.|..
T Consensus 12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~---~afV~f~~~~~a~~A~~~l~g~~ 68 (92)
T 2dgt_A 12 KLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KD---YAFVHMERAEDAVEAIRGLDNTE 68 (92)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SS---EEEEEESCHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CC---EEEEEECCHHHHHHHHHHhCCCe
Confidence 58889999999999999999874444321111 23 89999999999999999997654
No 106
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.47 E-value=0.12 Score=42.91 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=48.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee--eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE--AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRP 388 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~--~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~ 388 (502)
.++..+||..++.++|..+|...-.|. +.-.....|. .++|+|.|.+.++|..|++. .+ ..-.||+
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~---~~~~gr~ 85 (104)
T 1wg5_A 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HK---ERIGHRY 85 (104)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TT---CCSSSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Cc---chhCCcE
Confidence 588999999999999999998755543 2211111233 67999999999999999986 44 3334554
No 107
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=93.47 E-value=0.057 Score=44.88 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=46.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccc-cccCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~-~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-. .+..| ..++|+|.|.+.++|..|++.|.|..
T Consensus 28 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 92 (110)
T 1oo0_B 28 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE 92 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 588999999999999999997644443 2211 11122 26799999999999999999997743
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=93.45 E-value=0.059 Score=45.90 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=47.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.|+..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|++.|.|..-
T Consensus 24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 588999999999999999997754553 22 1221112267999999999999999999987553
No 109
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.45 E-value=0.071 Score=45.00 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=48.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.|+..+||..++.++|..+|...-.|.-......+ ++|+|.|.+.++|..|++.|.|..- .|++-+
T Consensus 12 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 77 (111)
T 1whx_A 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG---ITAIVEFLEPLEARKAFRHLAYSKF---HHVPLY 77 (111)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS---SCEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC---CEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 57888999999999999999875455322111222 3799999999999999999987653 355543
No 110
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.41 E-value=0.11 Score=42.74 Aligned_cols=59 Identities=10% Similarity=0.251 Sum_probs=44.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccc-cccCCc-ceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~-~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|... .|. +.-. ....|. .++|+|.|.+.++|..|+ .|.|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 78 (103)
T 2dng_A 17 TAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA 78 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC
Confidence 58899999999999999999885 342 2111 111233 679999999999999999 88653
No 111
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=93.40 E-value=0.057 Score=43.10 Aligned_cols=68 Identities=9% Similarity=0.152 Sum_probs=47.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.++..+||..++.++|..+|...-.| .+...+......++|+|.|.+.+ |..|.+.+.|..- .|++-+
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~ 73 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIR 73 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCS
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEE
Confidence 46778899999999999988653233 33222221223679999999999 9999999987653 355443
No 112
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=93.37 E-value=0.061 Score=45.04 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=46.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. +...+. .|. .++|+|.|.+.++|..|++.|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (115)
T 2dgo_A 17 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA-TGKSKGYGFVSFFNKWDAENAIQQMGGQW 81 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999998643443 211111 233 6799999999999999999997643
No 113
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=93.37 E-value=0.051 Score=43.78 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=47.6
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..++..+||..++.++|..+|...-.|. +...+. ....+.|+|.|.+.++|..|++.|.|..
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3588999999999999999997643442 222222 2236799999999999999999997754
No 114
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=93.32 E-value=0.038 Score=46.94 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=48.9
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.+|+..+||..++.++|..+|...-.|.-..... . ++|+|+|.+.++|..|++.|+|..- .|++.|
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~--g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~~~ 82 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--D--GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGE 82 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT--T--SEEEEEESSHHHHHHHHHHHTTCBC---CCTTSC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec--C--CEEEEEECCHHHHHHHHHHhCCCEE---CCcEee
Confidence 3688999999999999999998643443211111 1 6899999999999999999977643 455543
No 115
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=93.26 E-value=0.067 Score=45.50 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=46.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.| .+...+. ....++|+|.|.+.++|..|++.|.|..
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 72 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT-SKSRGFAFITFENPADAKNAAKDMNGKS 72 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT-TTCCCEEEEECSSHHHHHHHHHHCSSCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 57889999999999999988764333 2222222 2236799999999999999999997754
No 116
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.26 E-value=0.061 Score=43.88 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=44.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCC--ceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGD--FTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~--~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|... -.|.- .+..+| +|+|.|.+.++|..|++.|+|..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~--~~~~~g---~afV~f~~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 17 ILYVRNLMLSTSEEMIEKEFNNIKPGAVER--VKKIRD---YAFVHFSNREDAVEAMKALNGKV 75 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSTTCEEE--EEECSS---EEEEEESSHHHHHHHHHHHSSEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceEE--EEEeCC---eEEEEeCCHHHHHHHHHHhCCCE
Confidence 58899999999999999999875 33331 122233 89999999999999999997653
No 117
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.23 E-value=0.064 Score=42.97 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=44.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||.+++.++|..+|...-.|...... + ++|+|.|.+.++|..|++.|.|..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~---g~afV~f~~~~~A~~A~~~l~g~~ 66 (90)
T 2dnq_A 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--K---NYGFVHIEDKTAAEDAIRNLHHYK 66 (90)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--T---TEEEEEESSHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--C---CEEEEEECCHHHHHHHHHHhcCCc
Confidence 58889999999999999999875444322111 2 389999999999999999997643
No 118
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.21 E-value=0.05 Score=44.66 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=46.6
Q ss_pred hhhcCCCCCCCChHhhhccCCC-Cceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPG-DFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~-~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|.. .-.|. +...+. ....++|+|.|.+.++|..|.+.+.|..
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTT-CCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCC-CCccceEEEEECCHHHHHHHHHHccCCc
Confidence 5788999999999999998876 44342 222222 1236799999999999999999998765
No 119
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=93.21 E-value=0.054 Score=45.44 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=46.7
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..|+..+||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|++.|.|..
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 91 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 91 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE
Confidence 358899999999999999999763333 222222212236799999999999999999996643
No 120
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.18 E-value=0.078 Score=44.51 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=46.9
Q ss_pred hhhcCCCCCCCChHhhh---ccCCCCceee---eccccc-c--CCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELH---GVIPGDFTIE---AKAVKR-I--RGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~---~~f~~~~~i~---~k~~~~-~--~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|. .+|...-.|. +...+. + +...++|+|+|.+.++|..|++.|+|..
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 58888999999999998 8998754453 211111 1 1235799999999999999999997654
No 121
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.05 Score=44.48 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=44.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||.+++.++|..+|...-.|.-....+ ..++|+|.|.+.++|..|++.|.|..
T Consensus 29 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~ 87 (101)
T 2la4_A 29 TAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---EKGCCFIKYDTHEQAAVCIVALANFP 87 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 488899999999999999987644432111111 23589999999999999999997653
No 122
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.10 E-value=0.056 Score=43.84 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=46.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccc--cCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKR--IRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~--~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+. |.| ..++|+|.|.+.++|..|++.|.|..
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence 478889999999999999997644443 211111 111 26799999999999999999997653
No 123
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.07 E-value=0.089 Score=44.37 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=45.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeecccc-ccC---Cc-ceeEEEEeCCHHHHHHHHHhhc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVK-RIR---GD-NYAAFAIFSSPQEANQAFENVK 377 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~-~~~---g~-~~~~~~~f~~~~ea~~af~~l~ 377 (502)
+++..+||..++.++|..+|...-.|.+.-.. ... |. .++|+|+|.+.++|..|.+.+.
T Consensus 10 ~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 10 KVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 58889999999999999999875555433221 111 23 6799999999999999999883
No 124
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=93.07 E-value=0.078 Score=42.02 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=46.3
Q ss_pred HhhhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 317 RARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 317 l~~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
...++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|. .+.|..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~ 71 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL 71 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE
Confidence 34688999999999999999998644443 2111211223679999999999999999 886643
No 125
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.07 E-value=0.13 Score=42.32 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=45.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ecccc-ccC-Cc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVK-RIR-GD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~-~~~-g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...- |. +.-.. ... |. .++|+|.|.+.++|..|+ .|.|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 80 (104)
T 1wi8_A 17 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 80 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 588899999999999999998754 43 22111 111 22 568999999999999999 886643
No 126
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.97 E-value=0.11 Score=44.14 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=44.6
Q ss_pred HhhhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 317 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 317 l~~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
-..++..+||..++.++|..+|... .|. +. ..+.| ...++++|.|.+.++|..|+ .+.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g-~~~G~afV~F~~~~~a~~Al-~~~~ 77 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVG-RNNGNGLVKFLSPQDTFEAL-KRNR 77 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTC-CCCSEEEEECSSHHHHHHHH-HTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCC-CCCeEEEEEECCHHHHHHHH-hcCC
Confidence 3468999999999999999999875 442 22 12222 23689999999999999999 5644
No 127
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.95 E-value=0.085 Score=43.68 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=45.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVK 377 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~ 377 (502)
.|+..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|++.+.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 588999999999999999997754443 22 111211236799999999999999999996
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=92.85 E-value=0.077 Score=44.60 Aligned_cols=58 Identities=28% Similarity=0.373 Sum_probs=45.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||..++.++|..+|...-.|.-.... .++|+|.|.+.++|..|++.|.|..-
T Consensus 33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp EEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 58899999999999999999874444211111 34899999999999999999977653
No 129
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=92.82 E-value=0.12 Score=45.68 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=48.0
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
..++..+||..++.++|..+|..--.|... ... ....+.|+|.|.+.++|..|++.|.|.
T Consensus 100 ~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 100 RTLLAKNLSFNITEDELKEVFEDALEIRLV-SQD-GKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp GEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSS-SSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCC-CCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 358899999999999999999985555544 222 223568999999999999999999764
No 130
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=92.80 E-value=0.12 Score=43.12 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=44.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCce------eeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFT------IEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~------i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-. +.+...+.| ...+.|+|.|.+.++|..|.+ +.|.
T Consensus 13 ~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g-~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (107)
T 2lmi_A 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDG-KRRGDALIEMESEQDVQKALE-KHRM 77 (107)
T ss_dssp EEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTS-TTCSEEEEEBSSHHHHHHHHT-TTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCC-CEeeEEEEEECCHHHHHHHHH-hCcc
Confidence 4788999999999999999986322 232222222 236799999999999999999 7553
No 131
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.80 E-value=0.041 Score=44.84 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=45.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|.+.-. .+ ...++|+|.|.+.++|..|++.|+|..
T Consensus 21 ~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~-~~-~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (97)
T 2e5j_A 21 DVYVGNLPRDARVSDLKRALRELGSVPLRLT-WQ-GPRRRAFLHYPDSAAAQQAVSCLQGLR 80 (97)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCSEEE-EE-TTTTEEEEECSSHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCcCcHHHHHHHHHhcCCEEEEEE-cC-CCCcEEEEEECCHHHHHHHHHHhCCCE
Confidence 5889999999999999998876444432111 11 224589999999999999999997754
No 132
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=92.79 E-value=0.073 Score=45.78 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=46.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.|. +. ..+......+.++|.|.+.++|..|++.|.|.
T Consensus 65 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 65 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 588999999999999999997744443 22 12121223679999999999999999999664
No 133
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.77 E-value=0.13 Score=42.82 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=47.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 389 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~q 389 (502)
.++..+||..++.++|..+|...-.+.+.-...-.|. .++|+|.|.+.++|..|++ +.+ ..-.||+-
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~---~~~~gr~i 84 (102)
T 1wez_A 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDK---ANMQHRYV 84 (102)
T ss_dssp EEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSS---CCSSSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCC---CeECCcEE
Confidence 5888999999999999999986433333211111333 7799999999999999994 544 33345543
No 134
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.75 E-value=0.045 Score=44.70 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=44.6
Q ss_pred hhhcCCCCCCCChHhhh----ccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELH----GVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~----~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
+++..+||..++.++|. .+|...-.|. +...+.+ .++|+|.|.+.++|..|.+.|.|..
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~ 76 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYK 76 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCE
Confidence 58899999999999998 8887533332 2222222 4479999999999999999997653
No 135
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.73 E-value=0.12 Score=43.39 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=44.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.|+..+||..++.++|..+|...-.|.-.-..+. .++|+|.|.+.++|..|++.+.+
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhcc
Confidence 4888999999999999999987545532111121 35899999999999999998855
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.70 E-value=0.045 Score=43.90 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=44.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|...... +| +|+|.|.+.++|..|++.|.|..
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~---~afV~f~~~~~a~~A~~~l~g~~ 67 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFERRGRVIECDVV--KD---YAFVHMEKEADAKAAIAQLNGKE 67 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SS---CEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CC---EEEEEECCHHHHHHHHHHhCCCE
Confidence 58889999999999999999763344321111 33 89999999999999999997643
No 137
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.64 E-value=0.042 Score=47.74 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=45.6
Q ss_pred hhhc--CCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFL--HRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~--~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.|+. .+||.+++.++|..+|...-.|+-.-...++ ++++|.|.+.++|..|++.|.|..-
T Consensus 27 ~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r---gfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 27 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK---PYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp EEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC---SCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC---CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4778 7799999999999999764344322111223 4899999999999999999988643
No 138
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.61 E-value=0.13 Score=43.79 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=43.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCce------eeeccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFT------IEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~------i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.++..+||..++.++|..+|...-. +.+...+. ....++|+|.|.+.++|..|++ +.|
T Consensus 19 ~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g 82 (118)
T 2db1_A 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDR 82 (118)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 4888999999999999999976433 22222222 1237899999999999999999 744
No 139
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.59 E-value=0.091 Score=44.30 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=44.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.|+..+||..++.++|..+|...-.|.-.-.-+. .++|+|.|.+.++|..|++.+.+.
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccC
Confidence 4888999999999999999987555532111112 358999999999999999998664
No 140
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=92.52 E-value=0.13 Score=44.84 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=47.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ecccc-ccCC-cceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVK-RIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~-~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||+.++.++|..+|...-.|. +.-.+ ...| ..+.|+|.|.+.++|..|.+.+.|..-
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 70 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV 70 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe
Confidence 477889999999999999997744442 22211 1123 257899999999999999999977643
No 141
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.50 E-value=0.11 Score=43.86 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=42.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee--ec--cccccCC-cceeEEEEeCCHHHHHHHHHh
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE--AK--AVKRIRG-DNYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~--~k--~~~~~~g-~~~~~~~~f~~~~ea~~af~~ 375 (502)
.++..+||..++.++|..+|...-.++ +. ..+ .| ..++|+|.|.+.++|..|++.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 17 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN--NGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp EEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT--TSSCSSCEEEECSSHHHHHHHGGG
T ss_pred EEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC--CCCcceEEEEEECCHHHHHHHHHh
Confidence 588899999999999999998743332 22 222 23 367999999999999999875
No 142
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=92.48 E-value=0.092 Score=46.54 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=46.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. +...+......++|+|+|.+.++|..|++.|.|..
T Consensus 41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 105 (156)
T 1h2v_Z 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR 105 (156)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999997643442 21222211236799999999999999999997654
No 143
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=92.47 E-value=0.038 Score=44.72 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=45.2
Q ss_pred hhhcCCCCCCCChHhhh----ccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELH----GVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~----~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|. .+|...-.|. +.-.+.| ...++|+|.|.+.++|..|.+.|.|..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL-KMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHH-HHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCC-CcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 47889999999999988 8887644443 2212221 113589999999999999999997743
No 144
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=92.46 E-value=0.1 Score=41.37 Aligned_cols=56 Identities=9% Similarity=0.202 Sum_probs=43.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCc-ceeEEEEeCCHHHHHHHHHh
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~-~~~~~~~f~~~~ea~~af~~ 375 (502)
.++..+||..++.++|..+|...-.|. +. ..+. .|. .++|+|.|.+.++|..|.+.
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-TGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-TCCEEEEEEEEESSTHHHHHHHHS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-CCccccEEEEEECCHHHHHHHHHh
Confidence 588999999999999999997754443 21 1122 233 67999999999999999965
No 145
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=92.43 E-value=0.18 Score=41.35 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=46.3
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..++..+||..++.++|..+|...- |. +. ..+...|. .++|+|.|.+.++|..|+ .+.|..
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~ 84 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 84 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 3689999999999999999998754 43 22 11211232 679999999999999999 887654
No 146
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=92.40 E-value=0.051 Score=44.78 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=44.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|... +..+| +|+|.|.+.++|..|++.|.|..
T Consensus 13 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v--~~~~~---~afV~f~~~~~a~~A~~~l~g~~ 69 (103)
T 2dgu_A 13 VLFVRNLANTVTEEILEKAFSQFGKLERV--KKLKD---YAFIHFDERDGAVKAMEEMNGKD 69 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHSCEEEE--EECSS---CEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEE--EEECC---EEEEEeCCHHHHHHHHHHHCCCc
Confidence 58889999999999999999763344321 11133 89999999999999999997653
No 147
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=92.34 E-value=0.043 Score=47.05 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=43.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCc-eeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDF-TIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~-~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
+++..+||..++.++|..+|...- .|....... ....++++|.|.+.++|..|++.|+|.
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 688999999999999999986422 221111111 123458999999999999999999764
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.14 Score=44.46 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +..........+.|+|.|.+.++|..|++.|.|..
T Consensus 89 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 89 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred eEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 588899999999999999997754443 21122212236789999999999999999998765
No 149
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.33 E-value=0.067 Score=44.70 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=46.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee-----eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI-----EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i-----~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.|+..+||..++.++|..+|...-.| .+... . ....++|+|.|.+.++|..|++.|.|..-
T Consensus 27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~-g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-T-GRMRGQAFITFPNKEIAWQALHLVNGYKL 92 (115)
T ss_dssp EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-C-SSSCSEEEEECSSHHHHHHHHHHSTTCBC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-C-CccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 58899999999999999999753232 22211 1 12256999999999999999999987543
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.12 Score=42.05 Aligned_cols=64 Identities=25% Similarity=0.347 Sum_probs=48.5
Q ss_pred hhhcCCCCC-CCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPT-KVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~-~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.++..+||. .++.++|..+|...-.|...... + ++|+|.|.+.++|..|++.|.|..-. |++-+
T Consensus 12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~---g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 76 (96)
T 2kvi_A 12 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--N---AFGFIQFDNPQSVRDAIECESQEMNF---GKKLI 76 (96)
T ss_dssp EEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--T---TEEEEEESCHHHHHHHHHHHTCSSCB---TTTBC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--C---CEEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 588999998 99999999999874444321111 2 48999999999999999999876543 55544
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=92.32 E-value=0.041 Score=47.91 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=47.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+. .|. .+.|+|.|.+.++|..|++.|.|..
T Consensus 90 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 90 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV-TGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC-CCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 588899999999999999998644442 211121 233 6789999999999999999998864
No 152
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.31 E-value=0.11 Score=43.71 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=45.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.++..+||..++.++|..+|...-.|. +...+...-..++|+|.|.+.++|..|++.+.+
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 19 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp EEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 588999999999999999997644443 222222112357999999999999999998854
No 153
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.30 E-value=0.041 Score=44.34 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=42.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCce-eeeccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFT-IEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~-i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.++..+||.+++.++|..+|...-. +...... ..++|+|.|.+.++|..|.+.|+|
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccC
Confidence 5888999999999999998865333 2211111 134899999999999999999977
No 154
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=92.27 E-value=0.038 Score=45.20 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=43.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +.-... ..++|+|.|.+.++|..|++.|.|..
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~ 61 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKV 61 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCe
Confidence 366789999999999999886532332 111111 34589999999999999999998764
No 155
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=92.26 E-value=0.089 Score=45.53 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=46.9
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee---eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..++..+||..++.++|..+|...-.|. +...+. .|. .++|+|.|.+.++|..|++.|.|..
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-TRQSRGYGFVKFQSGSSAQQAIAGLNGFN 108 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-TTEEEEEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3689999999999999999997643442 212222 232 6799999999999999999997643
No 156
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=92.23 E-value=0.098 Score=44.51 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=46.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.| .+...+. ....++|+|.|.+.++|..|++.+.|.
T Consensus 37 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 37 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS-GRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSS-SSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCC-CCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 58899999999999999988764333 2222222 123679999999999999999999764
No 157
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.07 E-value=0.073 Score=45.50 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=43.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.|+..+||..++.++|..+|...-.|.-.-.-+. .++++|.|.+.++|..|++.+.+
T Consensus 18 ~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 18 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp EEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcc
Confidence 5889999999999999999875333421111111 35999999999999999999865
No 158
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=92.05 E-value=0.14 Score=44.93 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCC-cceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 389 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~q 389 (502)
.++..+||..++.++|..+|... .|. +.-...-.| ..++++|.|.+.++|..|++. .+ ..-.||+-
T Consensus 44 ~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~---~~l~gR~I 113 (126)
T 2hgm_A 44 FVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HK---ERIGHRYI 113 (126)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TT---CCBTTBCC
T ss_pred EEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CC---CEECCEEE
Confidence 58899999999999999999985 443 221111113 368999999999999999985 33 33346643
No 159
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.04 E-value=0.066 Score=44.54 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=44.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|.-...... .++|+|.|.+.++|..|++.|.|..
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTT 85 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 5889999999999999999975334431111111 3589999999999999999997643
No 160
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.98 E-value=0.12 Score=44.24 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=45.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeee-c-cccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEA-K-AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~-k-~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|.. . ......|. .++|+|.|.+.++|..|.+ +.|..
T Consensus 27 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~ 90 (124)
T 1wel_A 27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY 90 (124)
T ss_dssp EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe
Confidence 5889999999999999999987444321 1 11111343 7899999999999999999 76543
No 161
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.97 E-value=0.14 Score=42.85 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=46.4
Q ss_pred HhhhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 317 RARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 317 l~~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
...|+..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|+ .+.|.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 44699999999999999999998754443 2222221122579999999999999999 88654
No 162
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=91.80 E-value=0.068 Score=44.42 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=45.5
Q ss_pred hhhcCCCCCCC------ChHhhhccCCCCceee-eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKV------PSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~------~~eel~~~f~~~~~i~-~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..+ +.++|..+|...-.|. +.-.+ ..|. .++|+|.|.+.++|..|.+.|.|..
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-BTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 58889999988 5688999987644443 22222 2333 6799999999999999999997754
No 163
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=91.78 E-value=0.14 Score=39.14 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=40.3
Q ss_pred hhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHh
Q 010743 320 LFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 320 l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~ 375 (502)
++..+||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|.+.
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 5678899999999999888653333 2222222122367999999999999999984
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=91.76 E-value=0.18 Score=44.02 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=47.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||..++.++|..+|...-.|. +...+......+.|+|.|.+.++|..|++.|.|..-
T Consensus 91 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 91 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp EEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 588899999999999999998754443 212221122367899999999999999999988743
No 165
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.71 E-value=0.17 Score=42.35 Aligned_cols=58 Identities=14% Similarity=0.284 Sum_probs=44.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.++..+||..++.++|..+|...-.|. +...+. ....++|+|+|.+.++|..|++ +.|
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~ 73 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPG 73 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSC
T ss_pred EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCC
Confidence 588999999999999999997644443 211222 2236799999999999999998 544
No 166
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=91.53 E-value=0.12 Score=42.34 Aligned_cols=57 Identities=28% Similarity=0.403 Sum_probs=44.9
Q ss_pred hhhcCCCCC-CCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPT-KVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~-~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||. +++.++|..+|...-.|...... .++|+|.|.+.++|..|++.+.|..
T Consensus 24 ~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (97)
T 2xnq_A 24 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEM 81 (97)
T ss_dssp EEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSE
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 588999998 99999999999874444321111 3489999999999999999997754
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=91.42 E-value=0.089 Score=41.50 Aligned_cols=58 Identities=28% Similarity=0.336 Sum_probs=42.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCC----c-------eeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGD----F-------TIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~----~-------~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|... - .|. ..+.. ...++|+|.|.+.++|..|. .++|..
T Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~--~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--AVQIN-QDKNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--EEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce--EEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 58889999999999999988742 1 221 11111 11458999999999999999 996654
No 168
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=91.41 E-value=0.41 Score=45.98 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=57.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcceEEEEecCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQSNA 398 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk~v~~~~~~ 398 (502)
.++..+||..++.++|..+|...- |...... ...++|+|.|.+.++|..|++.|.|..- .|++.+ +....
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~i~---v~~~~ 93 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD---KYKGTAFVTLLNGEQAEAAINAFHQSRL---RERELS---VQLQP 93 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE---TTTTEEEEEESSHHHHHHHHHHHTTCEE---TTEECE---EEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe---cCCCEEEEEeCCHHHHHHHHHHcCCCee---CCeEEE---EEecC
Confidence 488999999999999999998754 3211111 1234899999999999999999988763 355443 22222
Q ss_pred CCeEEEEEEeecc
Q 010743 399 GIIASLYVRKMVC 411 (502)
Q Consensus 399 g~~~~~~vrkm~~ 411 (502)
. ...|||+.+-.
T Consensus 94 ~-~~~l~v~nlp~ 105 (284)
T 3smz_A 94 T-DALLCVANLPP 105 (284)
T ss_dssp C-SCEEEEESCCT
T ss_pred C-CCEEEEcCCCC
Confidence 1 24778887643
No 169
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=91.29 E-value=0.11 Score=43.93 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=44.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-.|. +.-.+ .+ ++|+|.|.+.++|..|++.+.|.
T Consensus 23 ~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~k---g~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 23 VVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KK---RQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TT---TEEEEEESSHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CC---CEEEEEECCHHHHHHHHHHhcCC
Confidence 488999999999999999997644443 21111 13 48999999999999999999764
No 170
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=91.27 E-value=0.14 Score=45.99 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=46.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. +...+. .| ..++|+|.|.+.++|..|++.|.|..
T Consensus 74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 138 (165)
T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-TGFSKGYALVEYETHKQALAAKEALNGAE 138 (165)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TSSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC-CCcEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 488999999999999999997644442 222222 23 26799999999999999999997743
No 171
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=91.11 E-value=0.16 Score=45.09 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=47.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKD 383 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d 383 (502)
+++..+||..++.++|..+|...-.|. +.-.++.+ ...|+|.|.++++|..|.+.|+|..--+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~--gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN--QFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETT--EEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCC--CcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 477899999999999999998865553 22222212 2459999999999999999998876543
No 172
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.06 E-value=0.12 Score=45.00 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=43.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.|+..+||..++.++|..+|...-.|. +.-. +. .++|+|.|.+.++|..|++.+.+
T Consensus 33 ~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~---kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KG---KNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GG---GTEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CC---CCEEEEEECCHHHHHHHHHHhcc
Confidence 488999999999999999997744442 2111 11 35899999999999999998865
No 173
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=90.99 E-value=0.084 Score=43.53 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=46.5
Q ss_pred hhhcCCCCC------CCChHhhhccCCCCceee-eccc-cccCC-cceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPT------KVPSEELHGVIPGDFTIE-AKAV-KRIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~------~~~~eel~~~f~~~~~i~-~k~~-~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||. .+..++|..+|...-.|. +.-+ .+..| ..++|+|.|.+.++|..|.+.|.|..-
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 477889999 888899999998754453 2211 11123 267999999999999999999987543
No 174
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=90.85 E-value=0.14 Score=47.70 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeee-ccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEA-KAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~-k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|.- +-...-.+..++++|.|.+.++|..|++.|.|..
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 5889999999999999999987544432 1111112347899999999999999999997653
No 175
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.83 E-value=0.18 Score=41.42 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=44.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCC-cceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRG-DNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.|+..+||..++.++|..+|...-.|. +. ..+. .| ..++|+|.|.+.++|..|++. .|
T Consensus 18 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~a~~~-~~ 79 (105)
T 2dh8_A 18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT-TNQSRGFGFVKFKDPNCVGTVLAS-RP 79 (105)
T ss_dssp EECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-SCCEEEEEEEEESSTTHHHHHHHH-CS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 588999999999999999997754443 22 2222 23 367999999999999999987 44
No 176
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.82 E-value=0.29 Score=42.15 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=43.5
Q ss_pred hhhcCCCCCC-CChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 319 RLFLHRIPTK-VPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 319 ~l~~~~iP~~-~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
.|+..+||.. ++.++|..+|...-.|.-.-.-+. .++|+|.|.+.++|..|++.|.+
T Consensus 27 ~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 27 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhcc
Confidence 5888999998 999999999987444321111111 24899999999999999999866
No 177
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.80 E-value=0.14 Score=43.19 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=44.3
Q ss_pred hhhcCCCCC-CCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPT-KVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~-~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.|+..+||. .++.++|..+|...-.|.-.-.-+.+ ++|+|.|.+.++|..|++.|.+.
T Consensus 17 ~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---g~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 17 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---NEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp EEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---SCEEEEESSHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC---CEEEEEECCHHHHHHHHHHHcCC
Confidence 488899999 99999999999864444311111112 47999999999999999999764
No 178
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=90.64 E-value=0.25 Score=43.76 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=44.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCce------eeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFT------IEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~------i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
.++..+||..++.++|..+|...-. |.+...+. ....++++|.|.+.++|..|.+ +.|.
T Consensus 46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~ 110 (136)
T 2hgl_A 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE 110 (136)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 5889999999999999999987433 22222222 1237899999999999999998 7653
No 179
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=90.63 E-value=0.17 Score=45.68 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=46.6
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCc--ee-eeccc-cccCCc-ceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDF--TI-EAKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~--~i-~~k~~-~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
..|+..+||..++.++|..+|...- .| .++-. .+..|. .++|+|.|.+.++|..|++.|.|.
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~ 122 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK 122 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 3689999999999999999996543 23 22211 111333 789999999999999999999764
No 180
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=90.61 E-value=0.15 Score=43.23 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=45.9
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
..++..+||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|+ .+.|.
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence 3689999999999999999998754443 22 22221223789999999999999999 78664
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=90.60 E-value=0.26 Score=44.94 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeee-c--cccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEA-K--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~-k--~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|.- . ..+. .|. .++|+|.|.+.++|..|++.|.|..
T Consensus 127 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 191 (216)
T 2qfj_A 127 RIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT-TGKHKGYGFIEYEKAQSSQDAVSSMNLFD 191 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC-CCCcCceEEEEecCHHHHHHHHHHccCCE
Confidence 5888999999999999999987544432 1 1111 233 6799999999999999999997754
No 182
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=90.51 E-value=0.2 Score=44.09 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=46.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +. ..+......++++|.|.+.++|..|++.|.|..
T Consensus 72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 136 (158)
T 2kn4_A 72 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 136 (158)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999996533442 22 111111236799999999999999999997644
No 183
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.51 E-value=0.16 Score=41.48 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=42.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCc-ceeEEEEeCCHHHHHHHHHh
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~ 375 (502)
.++..+||..++.++|..+|...-.|. +...+. .|. .++|+|.|.+.++|..|+++
T Consensus 17 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 17 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC-CCCccceEEEEECCHHHHHHHHHc
Confidence 588899999999999999997643442 211222 233 67999999999999999984
No 184
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=90.48 E-value=0.054 Score=44.29 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=44.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeee---ccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEA---KAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~---k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||..++.++|..+|...-.+.. .....| ...++|+|.|.+.++|..|.+ +.|..-
T Consensus 19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g-~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 19 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCC-CcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 5889999999999999998875332221 111111 224689999999999999998 877653
No 185
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=90.31 E-value=0.13 Score=44.58 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=46.4
Q ss_pred hhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 320 LFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 320 l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
++..+||..++.++|..+|...-.|. +...+. ....++|+|.|.+.++|..|.+.+.|..-
T Consensus 3 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI 66 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 66788999999999999997643442 222222 23478999999999999999999987754
No 186
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=90.27 E-value=0.28 Score=41.06 Aligned_cols=59 Identities=8% Similarity=0.108 Sum_probs=44.8
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhh
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENV 376 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l 376 (502)
..++..+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|.+.+
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 3689999999999999999998754553 2222221123679999999999999999875
No 187
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=90.22 E-value=0.11 Score=43.16 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=44.1
Q ss_pred hhhcCCCCCC-CChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTK-VPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~-~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||.. ++.++|..+|...-.|..... ..++|+|.|.+.++|..|++.|.|..
T Consensus 29 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~ 86 (110)
T 1wf1_A 29 RVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRV 86 (110)
T ss_dssp EEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCE
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 6889999999 999999999976333321111 23489999999999999999997644
No 188
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=90.19 E-value=0.11 Score=45.38 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=47.1
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..++..+||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|++.|.|..
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~ 113 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 113 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 358999999999999999999764333 222222212236689999999999999999997755
No 189
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.19 E-value=0.14 Score=44.51 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=42.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCce-------eeeccccccCCc-ceeEEEEeCCHHHHHHHHHh
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFT-------IEAKAVKRIRGD-NYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~-------i~~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~ 375 (502)
.++..+||..++.++|..+|..... |.+...+ .|. .++|+|.|.+.++|..|++.
T Consensus 25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~--~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP--DGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT--TSCEEEEEEECCSSHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHHHHh
Confidence 5888999999999999999986433 2222222 333 78999999999999999975
No 190
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=90.19 E-value=0.19 Score=44.76 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCC-cceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 389 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~q 389 (502)
.++..+||..++.++|..+|...-.+.+.-...-.| ..++++|+|.+.++|..|+ .+.+. .-.||+-
T Consensus 48 ~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~---~l~gR~i 115 (139)
T 2hgn_A 48 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRA---NMQHRYI 115 (139)
T ss_dssp CEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSC---SSSSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCC---EECCEEE
Confidence 588999999999999999998744223322111123 3679999999999999999 66543 3345543
No 191
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.13 E-value=0.16 Score=44.62 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=49.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.++..+||..++.++|..+|...-.|.-.... ....++++|.|.+.++|..|++.|.|..- .|++-+
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 141 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPGFAFVEFEDPRDAADAVRELDGRTL---CGCRVR 141 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEEC--SSSCSEEEEEESSHHHHHHHHHHHSSSCS---SSSCCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEe--eCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEE
Confidence 58899999999999999999763344211111 11345999999999999999999988543 466544
No 192
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.10 E-value=0.26 Score=41.20 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=43.9
Q ss_pred HhhhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHh
Q 010743 317 RARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 317 l~~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~ 375 (502)
...|+..+||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|.+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 4469999999999999999999764333 2222222112357999999999999999876
No 193
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.09 E-value=0.18 Score=41.60 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=43.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCce-ee-ecc--ccccCC-cceeEEEEeCCHHHHHHHHHhhc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFT-IE-AKA--VKRIRG-DNYAAFAIFSSPQEANQAFENVK 377 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~-i~-~k~--~~~~~g-~~~~~~~~f~~~~ea~~af~~l~ 377 (502)
.++..+||..++.++|..+|...-. |. +.- .....| ..++|+|.|.+.++|..|++.|.
T Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 10 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 5788999999999999988875322 32 221 112222 36799999999999999999994
No 194
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=90.02 E-value=0.15 Score=44.01 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=45.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-----eccccccCCcceeEEEEeCCHHHHHHHHHhhcCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-----AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 379 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-----~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~ 379 (502)
+|+..+||..++.++|..+|...-.|. +...+......++++|.|.+. +|..|.+.|.|.
T Consensus 25 ~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 25 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp EEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 689999999999999999997643442 211221112367999999999 999999999875
No 195
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=90.00 E-value=0.14 Score=44.81 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCChHhhh----ccCCCCcee-eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPTKVPSEELH----GVIPGDFTI-EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~----~~f~~~~~i-~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.|+..+||..++.++|. .+|...-.| .+.-.+.+ ...++|+|.|.+.++|..|.+.|+|.. =.|++-+
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~-~~rG~aFV~F~~~~~A~~Ai~~lng~~---l~gr~l~ 103 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD-DNSGKAYIVFATQESAQAFVEAFQGYP---FQGNPLV 103 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC-SSCCCEEEEESSHHHHHHHHHHSTTCC---CTTSCCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCC-CcCCEEEEEECCHHHHHHHHHHHCCCE---eCCCEEE
Confidence 58899999999998865 466543333 22222221 235689999999999999999998764 3466543
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=90.00 E-value=0.11 Score=48.67 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=50.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGR 387 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~ 387 (502)
.|+..+||..++.++|..+|...-.| .++ +.+ .+..++++|.|.+.++|..|+..|.|..-..+.|.
T Consensus 125 ~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 125 VLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 37788999999999999998653333 222 222 23358999999999999999999998876555544
No 197
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=89.98 E-value=0.098 Score=45.67 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=46.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---------eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---------AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---------~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|. +...+. ....++|+|.|.+.++|..|++.|.|..
T Consensus 47 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~-g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE-GRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE-TTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC-CCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 588899999999999999997643332 211222 2236799999999999999999997744
No 198
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.63 E-value=0.32 Score=41.18 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=47.0
Q ss_pred hhcCCCCCCCChHh----hhccCCCCc-ee-eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 320 LFLHRIPTKVPSEE----LHGVIPGDF-TI-EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 320 l~~~~iP~~~~~ee----l~~~f~~~~-~i-~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
++..+||..++.++ |..+|...- .| .+ .| ++|+|+|.+.++|..|++.|+|. |=.|||-+
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg--G~AfV~F~~~esA~~A~~~l~G~---~l~gr~i~ 77 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG--CSAILRFINQDSAERAQKRMENE---DVFGNRII 77 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT--TCEEEEESSHHHHHHHHHHHTTC---CSSSSCCE
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec--CEEEEEECCHHHHHHHHHHhcCC---ccCCceEE
Confidence 67899999999888 447887642 33 44 23 79999999999999999999765 55677766
No 199
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.63 E-value=0.093 Score=42.34 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.++..+||..++.++|..+|...-.|. ++ ...+..| .++|.|.+.++|..|.+.|.|..- .|++-+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~---~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 85 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA---VVNVTYSSKDQARQALDKLNGFQL---ENFTLK 85 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE---EEEEEESSHHHHHHHHHHHTTCBC---SSCBCE
T ss_pred EEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC---EEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 588899999999999999997533342 21 1122122 299999999999999999987543 355543
No 200
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=89.51 E-value=0.17 Score=46.73 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=46.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSK 382 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~ 382 (502)
+++..+||..++.++|..+|...-.|. +.-..+ ...++++|.|.+.++|..|.+.|+|..--
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 577889999999999999997643442 211111 12468999999999999999999887643
No 201
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=89.44 E-value=0.35 Score=44.03 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=47.8
Q ss_pred HhhhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 317 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 317 l~~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
...++..+||..++.++|..+|...-.|. ++ ..+......++|+|.|.+.++|..|.+.|.|..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 94 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM 94 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe
Confidence 44699999999999999999997643442 22 111111236799999999999999999998754
No 202
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=89.35 E-value=0.25 Score=45.85 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ecccc-ccCC-cceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVK-RIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~-~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.|+..+||..++.++|..+|...-.|. ++-.+ ...| ..++|+|.|.+.++|..|.+.+.|..-
T Consensus 17 tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~ 82 (213)
T 4f02_A 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 82 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc
Confidence 589999999999999999997643442 22111 1123 378999999999999999999977543
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=89.34 E-value=0.42 Score=45.83 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=46.4
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
..++..+||..++.++|..+|...-.|......+ ..++|+|.|.+.++|..|.+.+.|..-
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 3589999999999999999997643332111111 135899999999999999999987754
No 204
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=88.94 E-value=0.07 Score=44.93 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=46.7
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceeee---------c--cccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIEA---------K--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~~---------k--~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..++..+||..++.++|..+|...-.|.. . ..+......++|+|.|.+.++|..|++.|+|..
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 35888999999999999999987444431 1 111111225789999999999999999997743
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=89.15 E-value=0.23 Score=43.59 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=47.2
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee---eccccccCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..++..+||..++.++|..+|...-.|. +...+. .| ..+.|+|.|.+.++|..|++.|.|..
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-TGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-TCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 3588899999999999999998644443 212211 23 36789999999999999999997754
No 206
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=88.89 E-value=0.42 Score=46.09 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=57.5
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcceEEEEec
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQS 396 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk~v~~~~ 396 (502)
..++..+||..++.++|..+|...-.|. ++-.+...|..+.|+|.|.+.++|..|++ +.|..- .|++ |.+..
T Consensus 42 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~---~g~~---i~v~~ 114 (292)
T 2ghp_A 42 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVV---GQNE---IIVSH 114 (292)
T ss_dssp CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEE---TTEE---CEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEe---CCcE---EEEEE
Confidence 3589999999999999999997643442 22112113446899999999999999994 754332 4444 33444
Q ss_pred CCCCeEEEEEEeecc
Q 010743 397 NAGIIASLYVRKMVC 411 (502)
Q Consensus 397 ~~g~~~~~~vrkm~~ 411 (502)
.. ...|||+.+-.
T Consensus 115 ~~--~~~l~v~nlp~ 127 (292)
T 2ghp_A 115 LT--ECTLWMTNFPP 127 (292)
T ss_dssp CC--SCEEEEECCCT
T ss_pred CC--CCEEEEECCCC
Confidence 33 34788887643
No 207
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=88.56 E-value=0.29 Score=43.87 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=44.0
Q ss_pred HhhhhcCCCCCCCChHhhhccCCCCceee-ecccc-ccCC-cceeEEEEeCCHHHHHHHHHh
Q 010743 317 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVK-RIRG-DNYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 317 l~~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~-~~~g-~~~~~~~~f~~~~ea~~af~~ 375 (502)
...|+..+||..++.++|..+|...-.|. ++-.. ...| ..++|+|.|.+.++|..|.+.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 34689999999999999999998643442 22111 1123 367999999999999999976
No 208
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=88.44 E-value=0.33 Score=42.27 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=43.2
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ecccc-ccCC-cceeEEEEeCCHHHHHHHHHh
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVK-RIRG-DNYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~-~~~g-~~~~~~~~f~~~~ea~~af~~ 375 (502)
.++..+||..++.++|..+|...-.|. +.-.+ +..| ..+.|+|.|.+.++|..|.+.
T Consensus 5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp EEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 578899999999999999998754443 22111 1122 367899999999999999996
No 209
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=88.26 E-value=0.62 Score=42.70 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=46.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.| .+...+. ....++|+|.|.+.++|..|++.+.|..
T Consensus 90 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-g~~kG~afV~F~~~~~A~~Ai~~lng~~ 153 (177)
T 2f3j_A 90 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS-GRSLGTADVHFERRADALKAMKQYKGVP 153 (177)
T ss_dssp EEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT-SSCSCCEEEEESCHHHHHHHHHHSTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCEeeEEEEEeCCHHHHHHHHHHhCCCE
Confidence 68899999999999999988753333 3322222 1235799999999999999999997753
No 210
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.08 E-value=0.46 Score=41.53 Aligned_cols=60 Identities=20% Similarity=0.128 Sum_probs=45.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||..++.++|..+|...-.|. +.-..+ .| ..|+|.|.+.++|..|.+.|+|..-
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~G--f~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NG--IQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SS--EEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CC--CEEEEEECCHHHHHHHHHHhCCCEe
Confidence 466789999999999999998755543 221222 22 2599999999999999999988654
No 211
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=87.58 E-value=0.28 Score=46.92 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCc--eee-eccc-cccCCc-ceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDF--TIE-AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~--~i~-~k~~-~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
+|+..+||..++.++|..+|...- .|. ++-. .+..|. .++|+|+|.+.++|..|++.|.|..
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 136 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe
Confidence 589999999999999999997644 342 2211 111333 7899999999999999999997754
No 212
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=87.55 E-value=0.25 Score=43.28 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=42.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCC----cee-----eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGD----FTI-----EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~----~~i-----~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|... -.+ .+...+.+ ...++|+|.|.+.++|..|. .+.|..
T Consensus 6 ~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred EEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 58889999999999999988752 100 11111111 12468999999999999999 787655
No 213
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=87.50 E-value=0.4 Score=46.03 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=50.3
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCC-cceeEEEEeCCHHHHHHHHHhhc-CCCCCCCCCCcc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVK-GNQSKDSYGRPQ 389 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~-g~~~~d~~G~~q 389 (502)
.++..+||..++.++|..+|...-.|. +.... .| ..++|+|.|.+.++|..|++.+. |.......|+|-
T Consensus 98 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 98 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD--RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC--CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 588899999999999999997643442 22222 33 37899999999999999999994 444344455543
No 214
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=87.33 E-value=0.31 Score=46.80 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=45.9
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|..+|...-.|.-...- .+..++++|.|.+.++|..|++.|.|..
T Consensus 209 ~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~ 268 (282)
T 3pgw_A 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLV--PGRHDIAFVEFDNEVQAGAARDALQGFK 268 (282)
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe--cCCCcEEEEEeCCHHHHHHHHHHcCCcE
Confidence 48899999999999999999764444311111 2223599999999999999999998854
No 215
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=87.21 E-value=0.39 Score=50.47 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-ec--cccccCC-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k--~~~~~~g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|++.+||..++.++|..+|...-.|. ++ ..+. .| ..++|+|+|.+.++|..|+..|+|..
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR-SGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC-CCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 589999999999999999998744443 22 1122 23 36799999999999999999998764
No 216
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=86.30 E-value=0.35 Score=43.42 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=46.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...-.|. +...+......+.|+|.|.+.++|..|++.|.|..
T Consensus 116 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 180 (198)
T 2yh0_A 116 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 180 (198)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 588899999999999999997643442 21222112237799999999999999999997643
No 217
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=86.18 E-value=0.17 Score=41.30 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=42.0
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHH
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFE 374 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~ 374 (502)
.++..+||..++.++|..+|...-.|. +...+. ....++|+|.|.+.++|..|.+
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT-GVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC-CCccceEEEEECCHHHHHHHHh
Confidence 588899999999999999997643442 222222 2236899999999999999998
No 218
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=86.11 E-value=0.65 Score=44.48 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=45.8
Q ss_pred hhhcCCCCCCCChHhhh----ccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELH----GVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~----~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..+||..++.++|. .+|...-.|. ++-.+.+ ...++|+|.|.+.++|..|++.|.|..
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL-KMRGQAFVIFKEVSSATNALRSMQGFP 76 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC-CcceEEEEEECCHHHHHHHHHHhcCCe
Confidence 58899999999999966 7887644443 3222222 235799999999999999999998743
No 219
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=85.98 E-value=0.66 Score=43.03 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=44.5
Q ss_pred hhhhcCCCCCCCChHhhhccCCCCceeeec-cccccCC-cceeEEEEeCCHHHHHHHHHhh
Q 010743 318 ARLFLHRIPTKVPSEELHGVIPGDFTIEAK-AVKRIRG-DNYAAFAIFSSPQEANQAFENV 376 (502)
Q Consensus 318 ~~l~~~~iP~~~~~eel~~~f~~~~~i~~k-~~~~~~g-~~~~~~~~f~~~~ea~~af~~l 376 (502)
..++..+||..++.++|..+|...-.|.-. -.+...| ..++|+|+|.+.++|..|++.+
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 358999999999999999999875444321 1111123 3689999999999999999765
No 220
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=85.86 E-value=0.64 Score=43.43 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=45.9
Q ss_pred hhhcCCCC-CCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIP-TKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP-~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.|+..+|| ..++.++|..+|...-.|. ++-.+ ...++++|.|.+.++|..|++.|+|..-
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~---~~~g~afV~f~~~~~A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK---SKPGAAMVEMADGYAVDRAITHLNNNFM 67 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT---TSTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 37788999 7999999999998754443 32222 1235899999999999999999987653
No 221
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=85.85 E-value=0.49 Score=48.52 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=49.2
Q ss_pred hhhcCC--CCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCC
Q 010743 319 RLFLHR--IPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGR 387 (502)
Q Consensus 319 ~l~~~~--iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~ 387 (502)
.|+..+ ++.+++.++|..+|...-.+.-.-.-.++ ++++|.|.|.++|..|++.|+|..--+..|+
T Consensus 20 ~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k---gfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK---PYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp EEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC---SEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC---CEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 366655 67889999999999875555321111123 5999999999999999999999887655564
No 222
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=85.64 E-value=0.34 Score=40.45 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=41.9
Q ss_pred hhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcC
Q 010743 320 LFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 378 (502)
Q Consensus 320 l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g 378 (502)
|+..+|++.++.++|..+|...-.+. ..-.. ..++++|.|.|+++|..|.+.|++
T Consensus 10 L~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcC
Confidence 66788999999999999997533332 11111 245999999999999999999965
No 223
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=85.53 E-value=0.87 Score=43.64 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=46.9
Q ss_pred hhhcCCCCCCC-ChHhhhccCCCCceee---eccccccCCc-ceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKV-PSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~-~~eel~~~f~~~~~i~---~k~~~~~~g~-~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||..+ +.++|..+|...-.|. +.... .|. .+.++|.|.+.++|..|++.|.|..-
T Consensus 186 ~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 186 CLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp EEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 48889999997 8899999998744442 22222 233 78999999999999999999977543
No 224
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=85.49 E-value=0.35 Score=43.75 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=47.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCc-e---eeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDF-T---IEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~-~---i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.++..+||..++.++|..+|...- . +.+.+.. .+.++|.|.+.++|..|++.|.|..-. .|++-+
T Consensus 122 ~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~ 190 (198)
T 1qm9_A 122 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLR 190 (198)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCS--SCCSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccC--CCCeEE
Confidence 477889999999999998886533 2 2332211 348999999999999999999886542 255544
No 225
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=85.01 E-value=0.32 Score=43.66 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=42.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCc---ee------eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDF---TI------EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~---~i------~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|...- .+ .+...+.+ ...++|+|.|.+.++|..|. .|+|..
T Consensus 6 ~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 588899999999999999997520 00 11111111 12468999999999999999 786654
No 226
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=84.91 E-value=0.47 Score=44.54 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=45.7
Q ss_pred hhhcCCCCCCCChHhhhccCCCCc-eee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDF-TIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~-~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||..++.++|..+|...- .|. +.-... ..++++|.|.+.++|..|++.|.|..-
T Consensus 153 ~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~ 214 (229)
T 2adc_A 153 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDL 214 (229)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCcc
Confidence 478889999999999999987654 343 211111 134899999999999999999988654
No 227
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=84.52 E-value=0.4 Score=43.38 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=44.7
Q ss_pred hhhcCCCCC-CCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPT-KVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~-~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||+ .++.++|..+|...-.|. ++-... ..++|+|.|.+.++|..|.+.|+|..-
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN---KKENALVQMADGNQAQLAMSHLNGHKL 66 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT---CSSCCEEECTTTHHHHHHHHHHTTCCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCee
Confidence 477889999 999999999997643332 221111 134799999999999999999988543
No 228
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=84.31 E-value=1.8 Score=47.19 Aligned_cols=67 Identities=13% Similarity=-0.043 Sum_probs=41.7
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhccCCCCHHHHHHHHHHhhcCC
Q 010743 142 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNG 221 (502)
Q Consensus 142 ~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~fl~~g 221 (502)
.+++++|+||+. ++..+.+..+++.+..+...|. |. . .+.+..+.+. ..+
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~~~~~~~~~~-----------------~~--------~-~l~~fi~~~~---~~~ 55 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYMNIEDHSEYK-----------------IG--------N-SLDEFMAWVL---KVQ 55 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEEESSCTTCEE-----------------EE--------S-CHHHHHHHHH---HHC
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEEeCCceEEEE-----------------ec--------h-hHHHHHHHHH---HcC
Confidence 569999999975 4444568888887653321111 00 0 2333333332 346
Q ss_pred CEEEEEchhhHHHHHcc
Q 010743 222 TILVGHSLNNDLEVLKL 238 (502)
Q Consensus 222 ~ILVGHnl~fDl~fLk~ 238 (502)
.++++||+.||+.+|-.
T Consensus 56 ~~i~~hNl~FD~~~l~~ 72 (575)
T 2py5_A 56 ADLYFHNLKFAGAFIIN 72 (575)
T ss_dssp CEEEETTHHHHHHHHHH
T ss_pred CEEEEEChhhhHHHHHH
Confidence 78999999999998853
No 229
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=83.77 E-value=1.1 Score=40.02 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=43.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHh
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFEN 375 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~ 375 (502)
.++..+||..++.++|..+|...-.|. +...+......+.|+|.|.+.++|..|++.
T Consensus 106 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 588999999999999999998754453 212221112367899999999999999985
No 230
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=83.15 E-value=0.59 Score=40.67 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=46.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee---eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 389 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~---~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~q 389 (502)
.++..+||..++.++|..+|...-.|. +...+......+.|+|.|.+.++|..|.+ +. +..-.|++-
T Consensus 89 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~---~~~~~g~~i 158 (167)
T 2cjk_A 89 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK---FIDFKDRKI 158 (167)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS---EECSSSSCE
T ss_pred eEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC---CEEeCCeEE
Confidence 588999999999999999987644442 22222212236799999999999999997 43 233345543
No 231
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.92 E-value=1.2 Score=35.99 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=40.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.|+..++ .++.++|..+|...-.|.-..... ..++|+|.|.+.++|..|++.|.|..
T Consensus 17 ~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~a~~Ai~~l~g~~ 73 (97)
T 1x5p_A 17 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---PRNCAFVTYEKMESADQAVAELNGTQ 73 (97)
T ss_dssp EEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHTTTEE
T ss_pred EEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 3555553 788999999998754443211112 23489999999999999999997643
No 232
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=82.78 E-value=0.54 Score=44.10 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=45.1
Q ss_pred hhhcCCCCC-CCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPT-KVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~-~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.++..+||. .++.++|..+|...-.|. ++-.+. ..+.|+|.|.+.++|..|.+.|+|..-
T Consensus 36 ~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~---~~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 36 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN---KKENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp EEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT---TSCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 588999999 999999999997533332 221111 134799999999999999999987543
No 233
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.45 E-value=0.77 Score=36.31 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=37.6
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHHH
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQ 371 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~~ 371 (502)
.++..+||..++.++|..+|...-.|. +.-.+. ..++|+|.|.+.++|..
T Consensus 7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQS 57 (88)
T ss_dssp EEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHH
Confidence 478889999999999999998754443 221221 34589999999999964
No 234
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=81.15 E-value=1.5 Score=35.27 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=38.1
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceee-eccccccCCcceeEEEEeCCHHHHH
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEAN 370 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~-~k~~~~~~g~~~~~~~~f~~~~ea~ 370 (502)
.|+..+||.+++.++|..+|...-.|. +.-... ..++++|+|.+.++|.
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQ 62 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHH
Confidence 588999999999999999998755553 222222 3459999999999998
No 235
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=80.21 E-value=0.27 Score=43.48 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=42.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||..++.++|..+|.....+ .+.....| ...+.|+|.|.+.++|..|.+ +.|..
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~-l~g~~ 77 (175)
T 1fje_B 15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKALE-LTGLK 77 (175)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHHH-GGGEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCC-ccccEEEEEECCHHHHHHHHh-cCCCE
Confidence 58899999999999988777553222 11122221 235699999999999999995 87654
No 236
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=78.94 E-value=3.8 Score=34.64 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=53.4
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeec---cc--cccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAK---AV--KRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k---~~--~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
++-.-+|||+++.+++...++....+++- +. ..+.-.+.-|++.|++++++..=.+.++|..=.|+.|.--+
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 45567899999999988777654444432 11 11233467799999999999999999999999999887433
No 237
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.13 E-value=2.6 Score=35.20 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=35.1
Q ss_pred CCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhc
Q 010743 327 TKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVK 377 (502)
Q Consensus 327 ~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~ 377 (502)
.+++.++|..+|...-.|...... ....++|+|+|.+.++|..|++.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~ 75 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV 75 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC
Confidence 567889999999775555321111 1234599999999999999999853
No 238
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=77.61 E-value=1.2 Score=42.78 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=45.1
Q ss_pred hhhcCCCCCC-CChHhhhccCCCCceee-eccccccC--C-cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 319 RLFLHRIPTK-VPSEELHGVIPGDFTIE-AKAVKRIR--G-DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 319 ~l~~~~iP~~-~~~eel~~~f~~~~~i~-~k~~~~~~--g-~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
.++..+||.. ++.++|..+|...-.|. +.-.+... | ..+.|+|.|.+.++|..|+ .|.|..
T Consensus 212 ~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 212 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSL 277 (292)
T ss_dssp EEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEE
T ss_pred eEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCE
Confidence 4888899999 99999999998744443 22111111 2 3678999999999999999 997754
No 239
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=73.97 E-value=1.3 Score=43.07 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=45.5
Q ss_pred hhhcCCCCCCC---------ChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 319 RLFLHRIPTKV---------PSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 319 ~l~~~~iP~~~---------~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
.|+..+||..+ +.++|..+|...-.|+-...-. ..++|+|.|.+.++|..|.+.+.|..-
T Consensus 136 tLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 136 TLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp EEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred eeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 48888999887 5788999998755554221111 135899999999999999999988765
No 240
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=73.63 E-value=3.2 Score=35.36 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=42.5
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcc
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 389 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~q 389 (502)
.++..++ +++.++|..+|...-.|.-. .-+ ...++|+|.|.+.++|..|++.|.|..- .|++-
T Consensus 41 ~lfVgnl--~~te~~L~~~F~~~G~I~~v--~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l 103 (121)
T 2bz2_A 41 TLYVYGE--DMTPTLLRGAFSPFGNIIDL--SMD-PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQL 103 (121)
T ss_dssp EEEEECS--SCCHHHHHHHHSTTCCCSCE--EEE-TTTTEEEEECSSHHHHHHHHHHHTTCBC---SSCBC
T ss_pred EEEEcCC--CCCHHHHHHHHHccCCEEEE--EEe-CCCCEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 3556664 58899999999764333211 111 1234899999999999999999987643 45543
No 241
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=73.00 E-value=3.5 Score=34.42 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=34.9
Q ss_pred ChHhhhccCCCCceee---eccccc-cCCcceeEEEEeCCHHHHHHHHHhhcCCCC
Q 010743 330 PSEELHGVIPGDFTIE---AKAVKR-IRGDNYAAFAIFSSPQEANQAFENVKGNQS 381 (502)
Q Consensus 330 ~~eel~~~f~~~~~i~---~k~~~~-~~g~~~~~~~~f~~~~ea~~af~~l~g~~~ 381 (502)
..++|...|.+.-.|. +...+. +....++++|.|.+.++|..|++.|.|..-
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 3566777776533442 211111 112368999999999999999999988754
No 242
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=71.50 E-value=2.4 Score=35.30 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=50.8
Q ss_pred hhhcCCCCCCCChHhhhccCCCCceeeec---ccc--ccCCcceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCC
Q 010743 319 RLFLHRIPTKVPSEELHGVIPGDFTIEAK---AVK--RIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGR 387 (502)
Q Consensus 319 ~l~~~~iP~~~~~eel~~~f~~~~~i~~k---~~~--~~~g~~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~ 387 (502)
++-.-+||++++.+++...+.....+++- +.+ .+.-.+.-|++.|++.+.+..=.+.++|..=.|+-|.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~ 76 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQ 76 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCC
Confidence 34456789999999977666554444432 111 1234478899999999999999999999998998885
No 243
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=71.19 E-value=6.6 Score=44.66 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=55.6
Q ss_pred HHHHHhhcCCCEEEEEchhhHHHHHccc---CCCccchHHHhhhhcCCCCCCHHHHHHHHcCCccCCCCCCCCHHHHHHH
Q 010743 212 KRMKKLLSNGTILVGHSLNNDLEVLKLD---HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASA 288 (502)
Q Consensus 212 ~~l~~fl~~g~ILVGHnl~fDl~fLk~~---~p~vIDT~~L~r~~~~~~~~sL~~La~~~Lgi~iq~~~~~HdAleDA~A 288 (502)
..|..++....+ |+.+|+.+|... ...+.||...+..+.+. .++|+.|+..| |... . .. ..+||.+
T Consensus 340 ~~Lk~lLed~~i----n~K~d~~~L~~~Gi~~~~~~Dt~laayLl~p~-~~~l~~l~~~~-gk~~-~--~~--ya~da~~ 408 (832)
T 1bgx_T 340 KALRDLKEARGL----LAKDLSVLALREGLGLPPGDDPMLLAYLLDPS-NTTPEGVARRY-GGEW-T--EE--AGERAAL 408 (832)
T ss_dssp HHHHHCSSBCBT----THHHHHHHHHHHTCCCCBCCCHHHHHHHHCTT-CCSTTHHHHHH-SCCC-C--SS--HHHHHHH
T ss_pred HHHHHHHhCCCC----ChHHHHHHHHHcCCccCcccCHHHHHHHcCCC-CCCHHHHHHHh-CCCc-h--HH--HHHHHHH
Confidence 457777833334 999999999652 23468999888888776 89999999776 5421 1 11 2379999
Q ss_pred HHHHHHHHHHhc
Q 010743 289 AMKLVLAIIERR 300 (502)
Q Consensus 289 ta~L~~~~l~~g 300 (502)
+..|+..+...-
T Consensus 409 ~~~l~~~l~~~L 420 (832)
T 1bgx_T 409 SERLFANLWGRL 420 (832)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
No 244
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=70.01 E-value=1.7 Score=36.21 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=23.6
Q ss_pred cceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 355 DNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 355 ~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
..++++|.|.+.++|..|++.|.|..
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 37899999999999999999998765
No 245
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=69.99 E-value=3.6 Score=34.30 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=27.3
Q ss_pred ceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcceE
Q 010743 356 NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKL 391 (502)
Q Consensus 356 ~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk~ 391 (502)
.++++|.|.++++|..|++.|.|+.- .||+-+.
T Consensus 59 ~G~~fV~f~~~~~A~~Ai~~lnG~~f---~GR~i~v 91 (105)
T 3v4m_A 59 CGKIFVEFTSVFDCQKAMQGLTGRKF---ANRVVVT 91 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEe---CCCEEEE
Confidence 67999999999999999999988754 4665443
No 246
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.41 E-value=3.3 Score=33.24 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.6
Q ss_pred HHHHHHHhhhccccchhhhhhhHHHHHHHHH
Q 010743 463 IERLKRELREKDFQISMQDKNISDLKKKVAE 493 (502)
Q Consensus 463 ie~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 493 (502)
|..|+..|+.|+-||..++.+|..|.+.+++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888888887
No 247
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=68.69 E-value=3.5 Score=35.21 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=25.9
Q ss_pred ceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 356 NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 356 ~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.++++|.|.+.++|..|++.|.|+.- .||+-+
T Consensus 55 ~G~~fV~f~~~e~A~~Ai~~lnG~~f---~GR~i~ 86 (114)
T 3s6e_A 55 QGNVYVKCPSIAAAIAAVNALHGRWF---AGKMIT 86 (114)
T ss_dssp TCCEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 46899999999999999999987753 455544
No 248
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.81 E-value=7.2 Score=33.98 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=42.0
Q ss_pred hhcCCCCCC-CChHhhhccCCCCceeeeccccccCCcceeEEEEeCC-HHHHHHHHHhh
Q 010743 320 LFLHRIPTK-VPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSS-PQEANQAFENV 376 (502)
Q Consensus 320 l~~~~iP~~-~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~-~~ea~~af~~l 376 (502)
++..++|.. ++.++|..+|...-.|....... |.. +++|.|.+ ..+|..|.+.+
T Consensus 21 l~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~--g~~-tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 21 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAK-EGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCS-EEEEEESSCHHHHHHHHHHT
T ss_pred EEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec--CCC-EEEEEECCChHHHHHHHHHh
Confidence 667788998 99999999999755554433333 332 59999999 79999999987
No 249
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.56 E-value=4 Score=33.89 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=31.1
Q ss_pred HhhhccCCCCcee---eeccccccCCcceeEEEEeCCHHHHHHHHHhhcCCC
Q 010743 332 EELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 380 (502)
Q Consensus 332 eel~~~f~~~~~i---~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~g~~ 380 (502)
++|..+|...-.| .+ ..+. ..++++|.|.+.++|..|++.|.|..
T Consensus 41 ~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 41 EDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp HHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred HHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 5676677653333 22 1111 34589999999999999999998764
No 250
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=60.54 E-value=4.5 Score=38.79 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=98.2
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCC--cccccccccCCCChhhhccCCCCHHHHHHHHHHh
Q 010743 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 217 (502)
Q Consensus 140 ~~~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~--~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~f 217 (502)
.|..-..||+|-.-.+ .+++++.-....-.++.|=+|.. ...+...--|||--.||.++. + -+...+...
T Consensus 55 dP~~ttWiDIEG~p~D-----PVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aq-P--GL~S~vi~~ 126 (243)
T 3q7c_A 55 DPNAKTWMDIEGRPED-----PVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQ-P--GLTSAVIDA 126 (243)
T ss_dssp CTTSCCEEEEESCTTS-----CSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBC-T--THHHHHHHH
T ss_pred CCCCCeEEecCCCCCC-----CeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcC-C--chHHHHHHh
Confidence 4556678999976444 46789988644446788888875 344555567999999999987 3 567788899
Q ss_pred hcCCCEEEEEchhhHHHHHcccCCC----ccchHH---HhhhhcCCCCCCHHHHHHHHcCCccCC---C----CCCCCHH
Q 010743 218 LSNGTILVGHSLNNDLEVLKLDHPR----VIDTSL---IFKYVDEYRRPSLYNLCKSVLGYEIRK---K----GTPHNCL 283 (502)
Q Consensus 218 l~~g~ILVGHnl~fDl~fLk~~~p~----vIDT~~---L~r~~~~~~~~sL~~La~~~Lgi~iq~---~----~~~HdAl 283 (502)
++.+-||-..+.. |.+-|--.|.| +||... =+|.+...-+-....||+.+-|+-+.. + ..+|.||
T Consensus 127 LP~nMVlT~QGsD-DIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~VWd~f~~LC~~H~GvVv~KKKkg~~~s~~PHCAL 205 (243)
T 3q7c_A 127 LPRNMVITCQGSD-DIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCAL 205 (243)
T ss_dssp SCTTCEEEESSHH-HHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEECCCSSSSCCEECCCCHH
T ss_pred CCcCcEEEeeChH-HHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEeccccCCCCCCCchHHH
Confidence 9788888877754 66655555554 577532 222211112334556777777776542 1 2479999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 010743 284 DDASAAMKLVLAIIERRVD 302 (502)
Q Consensus 284 eDA~Ata~L~~~~l~~g~~ 302 (502)
-|+.+ |...+.....
T Consensus 206 LDCIM----F~aa~~G~~~ 220 (243)
T 3q7c_A 206 MDCIM----FDAAVSGGLN 220 (243)
T ss_dssp HHHHH----HHHHHHTSCC
T ss_pred HHHHH----HHHHhcCCCC
Confidence 99874 6665654443
No 251
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.11 E-value=10 Score=25.19 Aligned_cols=28 Identities=39% Similarity=0.519 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHh
Q 010743 462 VIERLKRELREKDFQISMQDKNISDLKKKVAEMKD 496 (502)
Q Consensus 462 ~ie~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 496 (502)
||-+|||+ |.++.|-|..||-+...+||
T Consensus 3 eiaalkqe-------iaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQE-------IAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-------HHHHHHHHHHHHHHHHHHHc
Confidence 77888876 44566666666666666554
No 252
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=56.97 E-value=7.8 Score=33.16 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=36.5
Q ss_pred hHhhhccCCCCceee-ec--ccccc---CCc-ceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcce
Q 010743 331 SEELHGVIPGDFTIE-AK--AVKRI---RGD-NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 390 (502)
Q Consensus 331 ~eel~~~f~~~~~i~-~k--~~~~~---~g~-~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk 390 (502)
.++|...|.+.-.|. ++ ..+.+ .|. .++++|.|.++++|..|++.|.|+.- .||+-+
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f---~GR~i~ 102 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---AGRKVV 102 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE---CCcEEE
Confidence 355666666544443 21 11221 222 58999999999999999999988743 455544
No 253
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=49.54 E-value=17 Score=28.97 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhccccchhhhhhhHHHHHHHHHH
Q 010743 461 KVIERLKRELREKDFQISMQDKNISDLKKKVAEM 494 (502)
Q Consensus 461 k~ie~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 494 (502)
.-|-+|+.+|..||.||.+++.+|.=.-|-.|.+
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErL 51 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERL 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHh
Confidence 4788999999999999999999887555555544
No 254
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=48.01 E-value=11 Score=39.76 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=96.6
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCC--cccccccccCCCChhhhccCCCCHHHHHHHHHHh
Q 010743 140 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 217 (502)
Q Consensus 140 ~~~~~VaID~ETTGl~~g~~~I~rVsvVd~~G~vi~d~LVkP~~--~I~dy~T~ihGIT~e~L~~ap~~~~dV~~~l~~f 217 (502)
.|..-..||+|-.-.+ .+++++.-....-.++.|=+|.. ...+...--|||.-.||.++. | -+...+...
T Consensus 389 dp~~ttWiDIEG~p~D-----PVE~AiyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aq-P--GL~S~vi~~ 460 (577)
T 3mwp_A 389 DPNAKTWMDIEGRPED-----PVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQ-P--GLTSAVIDA 460 (577)
T ss_dssp CTTSCEEEEEESCTTS-----CSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBC-T--THHHHHHHH
T ss_pred CCCCCeEEecCCCCCC-----CeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcC-C--chHHHHHHh
Confidence 3556678999875443 46788888654447788888975 344555667999999999987 3 556788899
Q ss_pred hcCCCEEEEEchhhHHHHHcccCCC----ccchHH---HhhhhcCCCCCCHHHHHHHHcCCccCCC-------CCCCCHH
Q 010743 218 LSNGTILVGHSLNNDLEVLKLDHPR----VIDTSL---IFKYVDEYRRPSLYNLCKSVLGYEIRKK-------GTPHNCL 283 (502)
Q Consensus 218 l~~g~ILVGHnl~fDl~fLk~~~p~----vIDT~~---L~r~~~~~~~~sL~~La~~~Lgi~iq~~-------~~~HdAl 283 (502)
++.+-||-..+.. |++-|-..|.| +||... -+|.+...-+-....||..+-|+-+... ..+|.||
T Consensus 461 LP~~mV~T~QGsd-DI~kLld~hGR~DiK~iDV~lt~eqaR~fEd~VW~~~~~LC~~H~GiVv~kKKkg~~~~~~pHCAL 539 (577)
T 3mwp_A 461 LPRNMVITCQGSD-DIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCAL 539 (577)
T ss_dssp SCTTCEEEESSHH-HHHHHHHHTTCTTCEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEEECC-----EEECCCCHH
T ss_pred CCcCcEEEeeChH-HHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEecccCCCCCCCCchHHH
Confidence 9778888777754 66666555554 577532 2221111122344567777777755421 2489999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 010743 284 DDASAAMKLVLAIIERRV 301 (502)
Q Consensus 284 eDA~Ata~L~~~~l~~g~ 301 (502)
-|+.+ |...+....
T Consensus 540 lDCiM----F~a~~~G~~ 553 (577)
T 3mwp_A 540 MDCIM----FDAAVSGGL 553 (577)
T ss_dssp HHHHH----HHHHHHTCC
T ss_pred HHHHH----HHHHhcCCC
Confidence 99874 555554443
No 255
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=47.95 E-value=8.1 Score=34.59 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=37.2
Q ss_pred hhhcCCC----CCCCChHhhhccCCCCcee---eeccccccCCc-ceeEEEEeCC----HHH----HHHHHH
Q 010743 319 RLFLHRI----PTKVPSEELHGVIPGDFTI---EAKAVKRIRGD-NYAAFAIFSS----PQE----ANQAFE 374 (502)
Q Consensus 319 ~l~~~~i----P~~~~~eel~~~f~~~~~i---~~k~~~~~~g~-~~~~~~~f~~----~~e----a~~af~ 374 (502)
+++..++ |..++.++|..+|...-.| .+...+. .|. -|.++|.|.+ +++ |..|++
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~-Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN-SALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT-TCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 4667788 9999999999999764333 2222222 344 8899999997 544 677777
No 256
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=39.40 E-value=5.1 Score=46.73 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCCEEEEEchhhHHHHHccc------CCCccchHHHh
Q 010743 220 NGTILVGHSLNNDLEVLKLD------HPRVIDTSLIF 250 (502)
Q Consensus 220 ~g~ILVGHnl~fDl~fLk~~------~p~vIDT~~L~ 250 (502)
..+|+||||+.||...++-. --+++||+.|.
T Consensus 193 ~~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLH 229 (1172)
T 3ikm_A 193 QEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMH 229 (1172)
T ss_dssp SCCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHH
T ss_pred CccEEEeCCcchhHHHHHHHHhcccCCceeeechhhh
Confidence 46899999999999887753 23589997653
No 257
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=37.80 E-value=25 Score=29.84 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=36.9
Q ss_pred CCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhh
Q 010743 324 RIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENV 376 (502)
Q Consensus 324 ~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l 376 (502)
..|+.+...+|..+|...-.+.|+=.. -++|+|+|++++-|..|...+
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhc
Confidence 789999999999998764333322111 368999999999999999987
No 258
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.12 E-value=35 Score=30.34 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHhh
Q 010743 460 LKVIERLKRELREKDFQISMQDKNISDLKKKVAEMKDQ 497 (502)
Q Consensus 460 ~k~ie~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 497 (502)
.|||..||.+|.+-.-++-.+.+-++.|++++.+...+
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555554433
No 259
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=33.89 E-value=23 Score=28.11 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=25.4
Q ss_pred HHHHHHhhhccccchhhhhhhHHHHHHHHH
Q 010743 464 ERLKRELREKDFQISMQDKNISDLKKKVAE 493 (502)
Q Consensus 464 e~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 493 (502)
..|..+|..|.-||-.|.+||-+|.-||.+
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888999999999999999888877765
No 260
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=28.82 E-value=32 Score=29.26 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=38.9
Q ss_pred CCCCCCChHhhhccCCCCceeeeccccccCCcceeEEEEeCCHHHHHHHHHhhc
Q 010743 324 RIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVK 377 (502)
Q Consensus 324 ~iP~~~~~eel~~~f~~~~~i~~k~~~~~~g~~~~~~~~f~~~~ea~~af~~l~ 377 (502)
..|+.+...+|..+|...-.+.|+=.. -++|+|+|++++-|..|...+.
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 789999999999999875444443222 3689999999999999999873
No 261
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=28.32 E-value=30 Score=25.62 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=19.5
Q ss_pred hhccccchhhhHHHHHHHHHHhhh
Q 010743 449 ADTNQCKCEDHLKVIERLKRELRE 472 (502)
Q Consensus 449 ~~~~~~~~~~h~k~ie~~~~~~~~ 472 (502)
+..-+..|+..-.|||||+.-|++
T Consensus 20 v~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 20 IQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHH
Confidence 344466799999999999998875
No 262
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.98 E-value=23 Score=23.24 Aligned_cols=10 Identities=50% Similarity=0.707 Sum_probs=7.6
Q ss_pred hhhHHHHHHH
Q 010743 457 EDHLKVIERL 466 (502)
Q Consensus 457 ~~h~k~ie~~ 466 (502)
-.-+||||||
T Consensus 18 AqAL~eIERL 27 (29)
T 1xnl_A 18 AQALREIERL 27 (29)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4568899987
No 263
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.74 E-value=43 Score=31.45 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHH
Q 010743 460 LKVIERLKRELREKDFQISMQDKNISDLKKKVAEMK 495 (502)
Q Consensus 460 ~k~ie~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 495 (502)
.-|+.+|+|+|.+|+=||+.+.+=+.+|+......+
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 358889999999999999998888888887775543
No 264
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.02 E-value=56 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=39.4
Q ss_pred hhhhccccchhhhHH---HHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHhhh
Q 010743 447 KIADTNQCKCEDHLK---VIERLKRELREKDFQISMQDKNISDLKKKVAEMKDQK 498 (502)
Q Consensus 447 ~~~~~~~~~~~~h~k---~ie~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 498 (502)
.++--|- |++.++ +++.|.+++.+++-||..+..=+.+++.++++.++..
T Consensus 60 VLaALNi--adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 60 DMMYLNI--ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 888887 8999999999999999888888888888888776654
No 265
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.84 E-value=62 Score=23.58 Aligned_cols=10 Identities=40% Similarity=0.684 Sum_probs=7.2
Q ss_pred HHHHHHHHHh
Q 010743 461 KVIERLKREL 470 (502)
Q Consensus 461 k~ie~~~~~~ 470 (502)
-+.|++||+|
T Consensus 7 ~dle~~KqEI 16 (45)
T 1use_A 7 SDLQRVKQEL 16 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3678888875
No 266
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.31 E-value=62 Score=23.39 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHH
Q 010743 460 LKVIERLKRELREKDFQISMQDKNISDLKKKVAEMK 495 (502)
Q Consensus 460 ~k~ie~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 495 (502)
-|.|-|||..--|-+-.-+.+.|||++|..++..+.
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 367888876543333334678999999988776543
No 267
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=25.96 E-value=46 Score=30.48 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=27.6
Q ss_pred ceeEEEEeCCHHHHHHHHHhhcCCCCCCCCCCcceE
Q 010743 356 NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKL 391 (502)
Q Consensus 356 ~~~~~~~f~~~~ea~~af~~l~g~~~~d~~G~~qk~ 391 (502)
.++++|.|.+.++|..|++.|.|+.- .||+-..
T Consensus 175 ~G~~fv~f~~~~~a~~a~~~l~gr~~---~gr~i~~ 207 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQALNGRWF---AGRKVVA 207 (222)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBS---SSSBCEE
T ss_pred eeEEEEEECCHHHHHHHHHHhcCceE---CCeEEEE
Confidence 68999999999999999999988753 5666543
No 268
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.23 E-value=34 Score=28.06 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=35.9
Q ss_pred hhhhccccchhhhHHHHHHHHHHhhhccccchhhhhhhHHHHHHH
Q 010743 447 KIADTNQCKCEDHLKVIERLKRELREKDFQISMQDKNISDLKKKV 491 (502)
Q Consensus 447 ~~~~~~~~~~~~h~k~ie~~~~~~~~~~~~~~~~~~~i~~~~~~~ 491 (502)
.+|...+.-=++-+.|.+.|.+++.+|+-||..+..+...|+.--
T Consensus 24 ~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 24 EVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555677899999999999999999999888888876543
No 269
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=20.67 E-value=38 Score=35.32 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=12.6
Q ss_pred CcEEEEEEeccCCC
Q 010743 142 NIMYAVDCEMVLCE 155 (502)
Q Consensus 142 ~~~VaID~ETTGl~ 155 (502)
.+|||||+|++|+.
T Consensus 22 ~~fVAiD~Ef~Gi~ 35 (430)
T 2a1r_A 22 ADFFAIDGEFSGIS 35 (430)
T ss_dssp CSEEEEEEEESCSC
T ss_pred CCEEEEeeeecccc
Confidence 47999999999995
Done!