Query 010744
Match_columns 502
No_of_seqs 450 out of 1389
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 13:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1.9E-41 6.5E-46 335.3 32.8 378 36-432 23-410 (451)
2 3o7q_A L-fucose-proton symport 100.0 5.8E-39 2E-43 316.3 29.8 358 37-435 22-411 (438)
3 4gc0_A D-xylose-proton symport 100.0 3.8E-38 1.3E-42 315.1 24.9 387 37-431 8-432 (491)
4 2gfp_A EMRD, multidrug resista 100.0 1.3E-36 4.5E-41 293.0 15.6 348 44-432 3-353 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.9E-34 6.5E-39 288.3 24.2 379 45-431 17-448 (491)
6 2xut_A Proton/peptide symporte 100.0 3.2E-29 1.1E-33 252.5 25.5 375 47-431 18-467 (524)
7 2cfq_A Lactose permease; trans 100.0 1.8E-30 6.1E-35 253.4 14.5 346 52-432 18-376 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.6 2.8E-14 9.7E-19 140.3 15.7 174 44-222 255-435 (451)
9 2cfq_A Lactose permease; trans 99.5 7.9E-14 2.7E-18 135.6 11.2 147 75-226 258-405 (417)
10 3o7q_A L-fucose-proton symport 99.4 1.1E-12 3.9E-17 128.3 14.1 157 51-215 268-427 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.4 2.1E-12 7.2E-17 128.4 12.9 168 51-224 293-475 (491)
12 4gc0_A D-xylose-proton symport 99.3 3.7E-11 1.3E-15 119.4 13.6 182 46-227 282-469 (491)
13 2gfp_A EMRD, multidrug resista 99.2 1.3E-11 4.6E-16 118.0 7.2 131 289-432 21-151 (375)
14 2xut_A Proton/peptide symporte 99.2 4.8E-11 1.7E-15 119.6 9.6 151 270-432 13-175 (524)
15 3mkt_A Multi antimicrobial ext 45.0 2E+02 0.0067 26.9 25.3 36 144-179 139-174 (460)
16 2g9p_A Antimicrobial peptide l 44.1 6.4 0.00022 19.0 0.4 14 95-108 2-15 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.9e-41 Score=335.33 Aligned_cols=378 Identities=13% Similarity=0.073 Sum_probs=295.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhchhhHHHHHhhcCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHH
Q 010744 36 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 115 (502)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 115 (502)
++.++..+..+++..+...++....++.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 355677888888999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hhHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHHHHHhhh
Q 010744 116 WAFSTAAVGA----SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGH 191 (502)
Q Consensus 116 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 191 (502)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccCccc-chHHHHHHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhHhhhcCCCcchhHHHhHHHHhhhcchhH
Q 010744 192 QFWGVPG-WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPT 270 (502)
Q Consensus 192 ~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (502)
.+ ||+.|++.+++.++..++.++..||++......++++.+.+.... ...+.+++...++ ...++.+++|.
T Consensus 182 -----~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 253 (451)
T 1pw4_A 182 -----FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-YNEKAEQELTAKQ--IFMQYVLPNKL 253 (451)
T ss_dssp -----TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH--HHHHHTSSCHH
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-chhhhhccccccc--chHHHHHcCHH
Confidence 78 999999999988887777766666544332222111111111000 0000000111111 11356788888
Q ss_pred HHHHHHHHHhhhhhhhhH-HHHHHHHHH-hCCChhhHHHHHHHHHhhhcccccchhhhhhhh--ccccCCcchhHHhhhh
Q 010744 271 FQIIVLQGIVGSLPWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI--SQAYPHSGRVMCAQFS 346 (502)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~ 346 (502)
++...+..++....+... .++|.|+++ +|+++.+++.+.+...++.+++.++.+++.||+ ++|+.. ..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-------~~~ 326 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-------GVF 326 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-------HHH
Confidence 888877777666554444 789999988 899999999999999999999999999999999 877631 111
Q ss_pred hhhhhhHHHHHhhhccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHHHHHhhhh-hhhhhHHHH
Q 010744 347 AFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGS-FSSFAAPLV 425 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~ 425 (502)
..+......+. ..... ....+......++.|++.+...+ ....+..|.+|++.|+++.|+.+.+.++ ++.++|.+.
T Consensus 327 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 327 FMTLVTIATIV-YWMNP-AGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHHHHHHHHH-TTSCC-TTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhc-ccCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 11111 11344455667777887777666 5678999999999999999999999999 999999999
Q ss_pred HHHHHHh
Q 010744 426 GILSEKM 432 (502)
Q Consensus 426 g~l~~~~ 432 (502)
|.+.|..
T Consensus 404 g~l~~~~ 410 (451)
T 1pw4_A 404 GYTVDFF 410 (451)
T ss_dssp HHHHHSS
T ss_pred HHHHHhc
Confidence 9999984
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.8e-39 Score=316.26 Aligned_cols=358 Identities=13% Similarity=0.116 Sum_probs=283.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhchhhHHHHHhhcCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHHH
Q 010744 37 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCW 116 (502)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 116 (502)
++++..+..+++..+..+++....++..|.+.+++|++..+.|++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 45566777788888888999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHHHHHh-hhc
Q 010744 117 AFSTAAV---GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMA-GHQ 192 (502)
Q Consensus 117 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~ 192 (502)
+++.+++ ++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +.
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~- 180 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN- 180 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS-
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999988 44
Q ss_pred ccCccc-------------------------chHHHHHHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhHhhhc
Q 010744 193 FWGVPG-------------------------WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKG 247 (502)
Q Consensus 193 ~~~~~~-------------------------wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (502)
.+ ||+.|++.+++.++..++.++.. .|+...+++ ++++
T Consensus 181 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~-~~~~----------- 243 (438)
T 3o7q_A 181 ----VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK-FPALQSDNH-SDAK----------- 243 (438)
T ss_dssp ----SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCTTTCC-CCSS-----------
T ss_pred ----cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCccccccc-cccc-----------
Confidence 33 99999988877776666554432 222111110 0000
Q ss_pred CCCcchhHHHhHHHHhhhcchhHHHHHHHHHHhhhhhhhhH-HHHHHH-HHH-hCCChhhHHHHHHHHHhhhcccccchh
Q 010744 248 NTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWTAM-VFFTMW-FEL-IGFDHSSTAALLSLFAIGCAVGSFLGG 324 (502)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g 324 (502)
+ ++..+..++++++|.++...+..++........ .++|.| +++ +|++..+++...+...++.++++++.+
T Consensus 244 ----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 244 ----Q---GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp ----T---TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----c---cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112234566788888888877776666654444 789999 888 699999999999999999999999999
Q ss_pred hhhhhhccccCCcchhHHhhhhhhhhhhHHHHHhhhccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhcccCCCchh
Q 010744 325 VVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRT 404 (502)
Q Consensus 325 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 404 (502)
++.||+++|+.. ..+.++........ . ..++. . .....++.|++.+...+ ....+..|.+|++ ++
T Consensus 317 ~l~~r~~~~~~~-------~~~~~~~~~~~~~~-~---~~~~~-~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 317 WLISRFAPHKVL-------AAYALIAMALCLIS-A---FAGGH-V-GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TK 381 (438)
T ss_dssp HHHHHSCHHHHH-------HHHHHHHHHHHHHH-H---HCCHH-H-HHHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HH
T ss_pred HHHHHhcchHHH-------HHHHHHHHHHHHHH-H---HcCCc-H-HHHHHHHHHHHHHHHHH-HHHHHHHhhcccc-cc
Confidence 999999998731 12222221111111 1 11222 2 23444677777777776 6788878888866 88
Q ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHhcCC
Q 010744 405 MIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 435 (502)
Q Consensus 405 ~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 435 (502)
.+.++.. ...+++.++|.+.|.+.|..+++
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~ 411 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI 411 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcch
Confidence 8988887 77899999999999999997645
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.8e-38 Score=315.14 Aligned_cols=387 Identities=13% Similarity=0.085 Sum_probs=273.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhchhhHHHHHhhcCCC--------CCCchHHHHHHHHHHhhhcchhhhhhhhcCCchh
Q 010744 37 LGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAG--------PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAV 108 (502)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~ 108 (502)
++.+.+..+.+++.++.++|...++..+|.+.++++.+ ..+.|++.+++.+|..++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 44556666677888999999999999999999988532 2357899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHH
Q 010744 109 LTIGILCWAFSTAAVG------------------ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLL 170 (502)
Q Consensus 109 l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 170 (502)
++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999998 4789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHhhhcc---cCcccchHHHHHHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhHhhhc
Q 010744 171 SLVGTMGGIGGGVLATIMAGHQF---WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKG 247 (502)
Q Consensus 171 ~~~~~~G~~~g~~~~~~l~~~~~---~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (502)
+.+..+|.++++.++..+..... ....+||+.+.+..+..++..+..++.||+|++...++++++++...++...++
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 99999999999999887765422 123578999988888888888888888888888766654443332222211111
Q ss_pred CCCc-----chhHHHhHH--HHhhhcchhHHHHHHHHHH-hhhhhhhhH-HHHHHHHHHhCCChhhHHHHHHHHHhhhcc
Q 010744 248 NTSV-----SSVWLESWM--ATKAVIKVPTFQIIVLQGI-VGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCAV 318 (502)
Q Consensus 248 ~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 318 (502)
...+ +....+..+ .....++.+.......... ......... .|.|.+.+..+.+...........++..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLT 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHH
Confidence 0000 000000000 1112233333333333322 223333333 567777777888888887777888899999
Q ss_pred cccchhhhhhhhccccCCcchhHHhhhhhhhhhhHHHHHhhhccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhccc
Q 010744 319 GSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVV 398 (502)
Q Consensus 319 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 398 (502)
+.++.+++.||+|||+... ... .........+.......... +. ..+..++...+.+....++.+.+.+|++
T Consensus 328 ~~~~~~~l~dr~Grr~~~~----~~~--~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~f 399 (491)
T 4gc0_A 328 FTVLAIMTVDKFGRKPLQI----IGA--LGMAIGMFSLGTAFYTQAPG-IV-ALLSMLFYVAAFAMSWGPVCWVLLSEIF 399 (491)
T ss_dssp HHHHHHHHHHHHCSHHHHH----HHH--HHHHHHHHHHHHHHHTTCCH-HH-HHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhcCcchhc----cch--HHHHHHHHHHHHHHhcccch-HH-HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 9999999999999997421 111 11111111111111222222 22 2222223333333333335678999999
Q ss_pred CCCchhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 010744 399 PAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 431 (502)
Q Consensus 399 p~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~ 431 (502)
|++.|+++.|+.+.++++++.+++.+.+.+.+.
T Consensus 400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.3e-36 Score=293.01 Aligned_cols=348 Identities=14% Similarity=0.146 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHHhhhhchhhHHHHHhhcCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHHHHHHHHHH
Q 010744 44 ILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV 123 (502)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 123 (502)
..+++..++..++.....+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHHHHHhhhcccCcccchHHH
Q 010744 124 GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAF 203 (502)
Q Consensus 124 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~~~~wr~~f 203 (502)
++++|++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++++.+. .+||+.|
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~ 157 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 7999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhHhhhcCCCcchhHHHhHHHHhhhcchhHHHHHHHHHHhhhh
Q 010744 204 ILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL 283 (502)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (502)
++.+++.++..++.++..||++..++++ ++ ..+..++.+|+|.++...+..++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T 2gfp_A 158 LFLLVLCAGVTFSMARWMPETRPVDAPR-----------------TR-------LLTSYKTLFGNSGFNCYLLMLIGGLA 213 (375)
T ss_dssp HHHHHHHHHHHCCCCCSSCCCSTTTCCC-----------------CC-------TTTCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcccCCCCccc-----------------cc-------HHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 9998888777665555455433221110 00 00122345666777777666666555
Q ss_pred hhhhH-HHHHHHHHH-hCCChhhHHHHHHHHHhhhcccccchhhhhhhhccccCCcchhHHhhhh-hhhhhhHHHHHhhh
Q 010744 284 PWTAM-VFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFS-AFMGIPFSWFLLTA 360 (502)
Q Consensus 284 ~~~~~-~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 360 (502)
..... .+.|.|+++ +|.++.+++.+.+...++.+++.++.+++.||++++. ...... ...+.... ...
T Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~~---~~~ 284 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLMW---IPD 284 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH------HHHHHHHHHTSSSSS---HHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---HHh
Confidence 44444 778999887 8999999999999999999999999999999998732 111111 11111100 000
Q ss_pred ccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 010744 361 IPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 432 (502)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 432 (502)
. ......+......++.|++.+...+ ....+..|..| ++|+++.|+.+...+++..++|.+.|.+.+..
T Consensus 285 ~-~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 285 W-FGVMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred h-hccccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 0111234455666777888888777 78899999998 89999999999999999999999999998763
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.9e-34 Score=288.29 Aligned_cols=379 Identities=9% Similarity=-0.005 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHhhhhc-hhhHHHHHhh-----cCCCCCCchHHHHHHHHHHhhhcchhhhhhhh-cCCchhHHHHHHHHH
Q 010744 45 LINLAAIMERADENLL-PSVYKEVSEA-----FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN-YDRPAVLTIGILCWA 117 (502)
Q Consensus 45 ~~~~~~~~~~~~~~~~-~~~~~~i~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~ 117 (502)
.+++..+...+..... ....+.+.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 3334444444444433 3334445555 99999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCC--cchhhhHHHHHHhhhhhHHHHHHHHHhhhcccC
Q 010744 118 FSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGV--RGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 195 (502)
Q Consensus 118 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~ 195 (502)
++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---- 172 (491)
T 4aps_A 97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---- 172 (491)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 999999999999999999999999999999999999999999988 77788889999999999999999999987
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhH-hh------------------hcCCCcchh--
Q 010744 196 VPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDEL-VE------------------KGNTSVSSV-- 254 (502)
Q Consensus 196 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~-- 254 (502)
.+||+.|++.++..++..++.++..++......+..+++.+.+..+. .+ .+.......
T Consensus 173 -~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 173 -AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 89999999988777666665554433322211111111111111000 00 000000000
Q ss_pred -----------------HHHhHHHHhhhcchhHHHHHHHHHHhhhhhhhh-HHHHHHHHHH-hCCChhhHHHHHHHHHhh
Q 010744 255 -----------------WLESWMATKAVIKVPTFQIIVLQGIVGSLPWTA-MVFFTMWFEL-IGFDHSSTAALLSLFAIG 315 (502)
Q Consensus 255 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~g~s~~~~~~~~~~~~~~ 315 (502)
+++......+..+....+...+........+.. ..++|.|.++ .+.+..+.+.......++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLF 331 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHH
Confidence 000000000111111223333333333333333 3678888877 777767778888888888
Q ss_pred hcccccchhhhhhhhccccCCcchhHHhhhhhhhhhhHHHHHhhhc---c-CCcchhHHHHHHHHHHHHHHhhhccCCCc
Q 010744 316 CAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAI---P-QSVSNYYTYAVTLVLMGLTISWNATAANG 391 (502)
Q Consensus 316 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 391 (502)
.+++.++.+++.||++||+... ......+..+............ . ..+...+......++.|++.+...+ ...
T Consensus 332 ~~~~~~~~~~l~~r~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~-~~~ 408 (491)
T 4aps_A 332 IMLYTPFFAWLWTAWKKNQPSS--PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP-VGL 408 (491)
T ss_dssp HHHHHHHHHHHHHHTTTC---C--HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT-HHH
T ss_pred HHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH-HHH
Confidence 8889999999999999987532 1111112221111111111100 0 1122344455677788888887776 678
Q ss_pred cchhcccCCCchhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 010744 392 PMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 431 (502)
Q Consensus 392 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~ 431 (502)
.++.|.+|++.|+++.|+.+...++|..++|.+.+.+.+.
T Consensus 409 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 409 SVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999998887664
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.2e-29 Score=252.46 Aligned_cols=375 Identities=10% Similarity=-0.035 Sum_probs=228.7
Q ss_pred HHHHHHHHHhhhhchhhH-HHHHhhcC------CCCCCchHHHHHHHHHHhhhcchhhhhhhhc-CCchhHHHHHHHHHH
Q 010744 47 NLAAIMERADENLLPSVY-KEVSEAFN------AGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIGILCWAF 118 (502)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~-~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~ 118 (502)
.+..++..+......+.+ +.+.+++| .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 333444444443344444 45677899 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhh-HHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhH---HHHHHhhhhhHHHHHHHHHhhhccc
Q 010744 119 STAAVGASQ-HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGL---LSLVGTMGGIGGGVLATIMAGHQFW 194 (502)
Q Consensus 119 ~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~~ 194 (502)
+.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--- 174 (524)
T 2xut_A 98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN--- 174 (524)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 999999999 999999999999999999999999999999999999877666 8999999999999999999887
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHhccCCccccCCCCC-CCCCCc-hhhHhhhcCCCc---------------------
Q 010744 195 GVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHG-TGENFD-RDELVEKGNTSV--------------------- 251 (502)
Q Consensus 195 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~--------------------- 251 (502)
.+||+.|++.+++.++..++.++..++.+....+.++ .+.... ...........+
T Consensus 175 --~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (524)
T 2xut_A 175 --FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNI 252 (524)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGT
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhccc
Confidence 8999999998887766555544433322111110000 000000 000000000000
Q ss_pred ---------------------chhHHHhHHH---H--hhhcchhHHHHHHHHHHhh---hhhhhh-HHHHHHHHHHhCCC
Q 010744 252 ---------------------SSVWLESWMA---T--KAVIKVPTFQIIVLQGIVG---SLPWTA-MVFFTMWFELIGFD 301 (502)
Q Consensus 252 ---------------------~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~g~s 301 (502)
+.++.+.... . .+..+.+..+......... ...+.. ..+++.+..+.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
T 2xut_A 253 PTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP 332 (524)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC
T ss_pred chhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC
Confidence 0000000000 0 0001112222121111111 111111 12333443333332
Q ss_pred h-hhHHHHHHHHHhhhcccccchhhhh----hhhccccCCcchhHHhhhhhhhhhhHHHHHhhhcc-----CCcchhHHH
Q 010744 302 H-SSTAALLSLFAIGCAVGSFLGGVVA----DRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP-----QSVSNYYTY 371 (502)
Q Consensus 302 ~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 371 (502)
. ...+.+.....++.+++..+.+++. ||.++|... ......+..+..... +.+.... ......+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 408 (524)
T 2xut_A 333 QWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA---LRKMGAGIAITGLSW-IVVGTIQLMMDGGSALSIFWQ 408 (524)
T ss_dssp SSSCHHHHHTTSGGGHHHHGGGTTTC------------CC---HHHHHTHHHHHHHHH-HTTTTTTTTTTTTCCCCSHHH
T ss_pred eeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh---HHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcCHHHH
Confidence 2 2355555555555555666666653 343332211 111222222211111 1111111 011223445
Q ss_pred HHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 010744 372 AVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 431 (502)
Q Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~ 431 (502)
.+..++.|++.+...+ ....+..|..|++.||+++|+.+...++|+.++|.+.|.+.+.
T Consensus 409 ~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 409 ILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5667778888877777 6788999999999999999999999999999999999988764
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=1.8e-30 Score=253.39 Aligned_cols=346 Identities=13% Similarity=0.068 Sum_probs=224.5
Q ss_pred HHHHhhhhchhhHHH-HHhhcCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHHHHHHH---HHHHhhh
Q 010744 52 MERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST---AAVGASQ 127 (502)
Q Consensus 52 ~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~ 127 (502)
+.........+.+|. +.+++|.++.+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ...++++
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2cfq_A 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555666 556799999999999999999999999999999999999999999888776532 2223333
Q ss_pred HHH-HHHHHHHHHhhhhhhhhhhhHHHHhhccCC--CCcchhhhHHHHHHhhhhhHHHHHHHHHhhhcccCcccchHHHH
Q 010744 128 HFL-HVGMWRAVNGFGLAIVIPALQSFIADSYKD--GVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFI 204 (502)
Q Consensus 128 ~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~~~~wr~~f~ 204 (502)
... .+...+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|+
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------~~~~~~f~ 171 (417)
T 2cfq_A 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT------INNQFVFW 171 (417)
T ss_dssp HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH------HCSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------hchhHHHH
Confidence 322 245567777776666555555555555543 456777888888889999999999999886 48999999
Q ss_pred HHHHHHHHHHHHHHHhccCCccccCCCCCCCCCCchhhHhhhcCCCcchhHHHhHHHHhhhcchhHHHHHHHHHHhhhhh
Q 010744 205 LMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLP 284 (502)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (502)
+.+++.++..+..++.+||+++..+ +++++. .+.++.. .++.++++++|.++...+..+.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 172 LGSGCALILAVLLFFAKTDAPSSAT---VANAVG---------ANHSAFS----LKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp TTTTTTTTHHHHSCSSCCCCSCSSC---SSSSSS---------SCCCCCC----HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccccc---cccccc---------ccccccc----HHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 8877655444444444444432110 000000 0000111 12334567788877666554443333
Q ss_pred hhhH-HHHHHHHHH-hC---CChhhHHHHHHHHHhhhcccccchhhhhhhhccccCCcchhHHhhhhhhhhhhHHHHHhh
Q 010744 285 WTAM-VFFTMWFEL-IG---FDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLT 359 (502)
Q Consensus 285 ~~~~-~~~~~~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (502)
+... .++|.|+++ ++ .+....+...+...++.+++.++.+++.||++||+.. ..+..+.. +.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l-------~~~~~~~~----~~~~ 304 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL-------LLAGTIMS----VRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-------HHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH-------HHHHHHHH----HHHH
Confidence 3333 567888765 33 2244557777777888888999999999999998731 11111111 1111
Q ss_pred hccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHHH-HHhhhhhhhhhHHHHHHHHHHh
Q 010744 360 AIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFD-RAFEGSFSSFAAPLVGILSEKM 432 (502)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~g~l~~~~ 432 (502)
.....++ .+.+.+...+.+++.+...+ ....+..|.+|++.|+++.++. +....+++.++|.+.|.+.|..
T Consensus 305 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 305 GSSFATS-ALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHTTCCS-HHHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred HHHHhcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 1122222 22333444445555444333 3567899999999999999994 7888899999999999999874
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=2.8e-14 Score=140.30 Aligned_cols=174 Identities=13% Similarity=0.128 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHhhhhchhhHHHHHhh-cCCCCCCchHHHHHHHHHHhhhcchhhhhhhhc--CCchhHHHHHHHHH-HH
Q 010744 44 ILINLAAIMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY--DRPAVLTIGILCWA-FS 119 (502)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~~~~~~~~-~~ 119 (502)
..+.+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 344444455555555566677777776 899999999999999999999999999999999 99999888887776 67
Q ss_pred HHHHHhh--hHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhh-hhhHHHHHHHHHhhhcccCc
Q 010744 120 TAAVGAS--QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTM-GGIGGGVLATIMAGHQFWGV 196 (502)
Q Consensus 120 ~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~~~ 196 (502)
.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|++++|+.+....+ |..++|.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~----- 409 (451)
T 1pw4_A 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF----- 409 (451)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 7776665 47788888889999999999999999999999999999999999999999 999999999999987
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcc
Q 010744 197 PGWRCAFILMATLSVLIAFLVLVFVV 222 (502)
Q Consensus 197 ~~wr~~f~~~~~~~~~~~~~~~~~~~ 222 (502)
.||+..|++.+++.++..++.++..+
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999998888877776666543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=7.9e-14 Score=135.58 Aligned_cols=147 Identities=12% Similarity=0.188 Sum_probs=126.1
Q ss_pred CCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010744 75 PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFI 154 (502)
Q Consensus 75 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 154 (502)
..+.+++.++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999888888888888888888888888888777777788999
Q ss_pred hhccCCCCcchhhhH-HHHHHhhhhhHHHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHhccCCcc
Q 010744 155 ADSYKDGVRGAGFGL-LSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRK 226 (502)
Q Consensus 155 ~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~~~~~ 226 (502)
.|.+|++.|+++.++ ++....+|..++|.+++++.+. .|++..|.+.+++.++..++.++..+++++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999998 4788889999999999999887 789999999888888777776665555433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=1.1e-12 Score=128.26 Aligned_cols=157 Identities=10% Similarity=-0.054 Sum_probs=128.4
Q ss_pred HHHHHhhhhchhhHHHH-Hhh-cCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHHHHHHHHHHHhhhH
Q 010744 51 IMERADENLLPSVYKEV-SEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQH 128 (502)
Q Consensus 51 ~~~~~~~~~~~~~~~~i-~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~ 128 (502)
++............|.+ .++ +|.+..+.+++.+.+.++..++.++.|++.||+|||+++..+.++.+++.++..+.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG 347 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333334444455555 555 5999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHHHHHhhhcccCccc-chHHHHHHH
Q 010744 129 FLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG-WRCAFILMA 207 (502)
Q Consensus 129 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~~~~-wr~~f~~~~ 207 (502)
.+.++.. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+. .| ++..|++.+
T Consensus 348 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-----~g~~~~~~~~~~ 419 (438)
T 3o7q_A 348 HVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-----AGNIPTAELIPA 419 (438)
T ss_dssp HHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-----HTSSGGGGHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHH
Confidence 7765554 8899999999999999999999765 888888877 6679999999999999987 67 999998865
Q ss_pred HHHHHHHH
Q 010744 208 TLSVLIAF 215 (502)
Q Consensus 208 ~~~~~~~~ 215 (502)
+..++..+
T Consensus 420 ~~~~~~~~ 427 (438)
T 3o7q_A 420 LCFAVIFI 427 (438)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.38 E-value=2.1e-12 Score=128.44 Aligned_cols=168 Identities=12% Similarity=0.091 Sum_probs=132.7
Q ss_pred HHHHHhhhhchhhHHHHHhh-cCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHH-----HHHHHHHHHHHHHH
Q 010744 51 IMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLT-----IGILCWAFSTAAVG 124 (502)
Q Consensus 51 ~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-----~~~~~~~~~~~~~~ 124 (502)
+............+|.+.++ ++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555544 6777788999999999999999999999999999987655 77888888877777
Q ss_pred hhh---------HHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHHHHHhhhcccC
Q 010744 125 ASQ---------HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWG 195 (502)
Q Consensus 125 ~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~ 195 (502)
+.. +.+.+.+.-++.|++.+...+....++.|.+|+++|+++.|+......+|..+++.+.+.+.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----- 447 (491)
T 4aps_A 373 IPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----- 447 (491)
T ss_dssp HHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----
T ss_pred HHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 654 677788888999999999999999999999999999999999999999999999999888765
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhccCC
Q 010744 196 VPGWRCAFILMATLSVLIAFLVLVFVVDP 224 (502)
Q Consensus 196 ~~~wr~~f~~~~~~~~~~~~~~~~~~~~~ 224 (502)
.++.+.|.+.++++++..++.+++.++.
T Consensus 448 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 448 -KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp -SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888777777665543
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.26 E-value=3.7e-11 Score=119.39 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=130.8
Q ss_pred HHHHHHHHHHhhhhchhhHHHHHhhcCCCCCCchHHHHHHHHHHhhhcchhhhhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 010744 46 INLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGA 125 (502)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 125 (502)
.....+........+....|.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 33333333444445555667888888877777777778888889999999999999999999999999888888776654
Q ss_pred h-----hHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhhHHHHHHHHHhhhcc-cCcccc
Q 010744 126 S-----QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-WGVPGW 199 (502)
Q Consensus 126 ~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~~~~~w 199 (502)
. ++...++..-+..+.......+....+.+|.+|.+.|++++|+......+|..+++.+...+.+... ....++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~ 441 (491)
T 4gc0_A 362 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN 441 (491)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3 1222222222222222233446778899999999999999999999999999998888766543210 011467
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCccc
Q 010744 200 RCAFILMATLSVLIAFLVLVFVVDPRKK 227 (502)
Q Consensus 200 r~~f~~~~~~~~~~~~~~~~~~~~~~~~ 227 (502)
.+.|++.++++++..+..+++.||++.+
T Consensus 442 ~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 442 GFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 7789999999999999888888887543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.21 E-value=1.3e-11 Score=118.00 Aligned_cols=131 Identities=8% Similarity=0.037 Sum_probs=102.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhhhcccccchhhhhhhhccccCCcchhHHhhhhhhhhhhHHHHHhhhccCCcchh
Q 010744 289 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 368 (502)
Q Consensus 289 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (502)
..+|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+... .+..+.......... . ++.
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-------~~~~~~~~~~~~~~~----~-~~~ 88 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL-------VGMSIFMLATLVAVT----T-SSL 88 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH-------HHHHHHHHHHHHHHH----H-HHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-------HHHHHHHHHHHHHHH----h-ccH
Confidence 5577777889999999999999999999999999999999999998642 111111111111111 1 234
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 010744 369 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 432 (502)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 432 (502)
+.+.+..++.|++.+...+ ....++.|..|+++|++++++.+....+|..++|.+.+.+.+..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 151 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 5566777788888887777 67899999999999999999999999999999999999988764
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.17 E-value=4.8e-11 Score=119.62 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhhhh-hhhHHHHHHHHHH-hC------CChhhHHHHHHHHHhhhcccccchhhhhhhh-ccccCCcchh
Q 010744 270 TFQIIVLQGIVGSLP-WTAMVFFTMWFEL-IG------FDHSSTAALLSLFAIGCAVGSFLGGVVADRI-SQAYPHSGRV 340 (502)
Q Consensus 270 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~ 340 (502)
.++...+..++.... +....+++.|+++ +| +++.+.+++.+...++..++.++.|+++||+ |||+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~---- 88 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI---- 88 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH----
Confidence 334444444443333 4445788888876 88 9999999999999999999999999999999 998732
Q ss_pred HHhhhhhhhhhhHHHHHhhhccCCcchhHHHHHHHHHHHHHHhhhccCCCccchhcccCCCchhhHHHH---HHHhhhhh
Q 010744 341 MCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAF---DRAFEGSF 417 (502)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~ 417 (502)
..+.++......+. ...+...+.+.+..++.|++.+...+ ...+++.|.+|+++|+++.+. .+...++|
T Consensus 89 ---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 89 ---LWLSLIYCVGHAFL----AIFEHSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp ---HHHHHHHHHHHHHH----HHTSSCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 11221111111111 11121244456677788988888777 688999999999999876666 88889999
Q ss_pred hhhhHHHHHHHHHHh
Q 010744 418 SSFAAPLVGILSEKM 432 (502)
Q Consensus 418 ~~~~~~~~g~l~~~~ 432 (502)
..++|.+.+.+.+..
T Consensus 161 ~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 161 SFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHTSTHHHHTS
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998763
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=44.96 E-value=2e+02 Score=26.87 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=21.5
Q ss_pred hhhhhhhHHHHhhccCCCCcchhhhHHHHHHhhhhh
Q 010744 144 AIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGI 179 (502)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 179 (502)
+.............+..++|.+...+.+....+-.+
T Consensus 139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 174 (460)
T 3mkt_A 139 AVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNI 174 (460)
T ss_dssp HHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 333344445566677777787777776665554443
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=44.11 E-value=6.4 Score=19.05 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=11.0
Q ss_pred hhhhhhhhcCCchh
Q 010744 95 LAGVLVINYDRPAV 108 (502)
Q Consensus 95 ~~G~l~dr~Grr~~ 108 (502)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788999999864
Done!