Query 010746
Match_columns 502
No_of_seqs 312 out of 2036
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 4.1E-26 1.4E-30 205.7 13.0 155 43-216 2-157 (163)
2 2anr_A Neuro-oncological ventr 99.9 1.8E-26 6.1E-31 211.2 10.7 161 41-217 3-177 (178)
3 2jzx_A Poly(RC)-binding protei 99.9 6.2E-26 2.1E-30 203.9 9.7 155 42-215 3-159 (160)
4 2anr_A Neuro-oncological ventr 99.9 4.9E-25 1.7E-29 201.6 11.8 174 138-423 3-177 (178)
5 1j4w_A FUSE binding protein; s 99.9 4.8E-25 1.7E-29 200.8 11.2 156 43-213 2-174 (174)
6 2jvz_A KH type-splicing, FAR u 99.9 3E-25 1E-29 200.4 9.4 154 44-215 2-160 (164)
7 3krm_A Insulin-like growth fac 99.9 2.1E-24 7.1E-29 194.6 14.8 155 141-422 3-157 (163)
8 2jvz_A KH type-splicing, FAR u 99.9 7.1E-24 2.4E-28 191.3 15.1 160 141-422 2-161 (164)
9 2jzx_A Poly(RC)-binding protei 99.9 5.4E-24 1.8E-28 191.3 10.4 157 139-421 3-159 (160)
10 1j4w_A FUSE binding protein; s 99.9 1.5E-23 5E-28 191.1 12.5 173 140-419 2-174 (174)
11 3n89_A Defective in GERM LINE 99.9 6.5E-23 2.2E-27 203.8 10.8 231 136-421 25-261 (376)
12 3n89_A Defective in GERM LINE 99.8 4.9E-21 1.7E-25 190.3 10.4 286 39-409 25-326 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 3.2E-18 1.1E-22 149.9 9.9 139 261-421 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 6.8E-18 2.3E-22 147.8 10.5 136 43-215 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.7 4E-16 1.4E-20 145.2 11.1 155 139-421 32-191 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.6 2.6E-16 8.8E-21 146.5 8.6 144 43-217 33-193 (219)
17 2hh2_A KH-type splicing regula 99.5 6.4E-15 2.2E-19 122.0 7.2 73 348-422 8-80 (107)
18 2axy_A Poly(RC)-binding protei 99.5 5.3E-15 1.8E-19 113.7 6.2 70 345-421 3-72 (73)
19 1dtj_A RNA-binding neurooncolo 99.5 1.2E-14 4E-19 113.0 7.4 73 347-421 3-75 (76)
20 1zzk_A Heterogeneous nuclear r 99.5 2.2E-14 7.4E-19 113.1 8.7 73 345-422 5-77 (82)
21 2p2r_A Poly(RC)-binding protei 99.5 1.3E-14 4.3E-19 112.7 6.1 73 345-422 3-75 (76)
22 1wvn_A Poly(RC)-binding protei 99.5 1.9E-14 6.4E-19 113.5 6.8 73 345-422 4-76 (82)
23 2axy_A Poly(RC)-binding protei 99.5 1.4E-14 4.9E-19 111.3 5.7 70 139-215 3-72 (73)
24 2hh3_A KH-type splicing regula 99.5 2.7E-14 9.2E-19 117.7 7.5 72 347-423 11-82 (106)
25 1tua_A Hypothetical protein AP 99.5 7.6E-14 2.6E-18 126.5 10.9 151 142-421 5-160 (191)
26 1ec6_A RNA-binding protein NOV 99.5 2.3E-14 7.9E-19 114.3 5.7 77 347-425 3-79 (87)
27 1j5k_A Heterogeneous nuclear r 99.5 3E-14 1E-18 114.1 6.1 75 343-422 10-84 (89)
28 2opv_A KHSRP protein; KH domai 99.5 1.4E-13 4.6E-18 109.3 8.7 74 345-421 12-85 (85)
29 1x4n_A FAR upstream element bi 99.5 7.6E-14 2.6E-18 112.4 7.1 73 345-422 13-85 (92)
30 1tua_A Hypothetical protein AP 99.5 6.7E-14 2.3E-18 126.9 6.9 144 46-216 6-161 (191)
31 2dgr_A Ring finger and KH doma 99.4 4.2E-14 1.4E-18 111.0 4.6 69 345-421 8-76 (83)
32 1wvn_A Poly(RC)-binding protei 99.4 8.6E-14 3E-18 109.6 6.2 74 138-216 3-76 (82)
33 1dtj_A RNA-binding neurooncolo 99.4 1.1E-13 3.8E-18 107.4 6.7 72 141-215 3-75 (76)
34 1zzk_A Heterogeneous nuclear r 99.4 1.6E-13 5.5E-18 108.0 7.7 72 139-215 5-76 (82)
35 2p2r_A Poly(RC)-binding protei 99.4 8.2E-14 2.8E-18 108.1 5.7 73 139-216 3-75 (76)
36 1x4m_A FAR upstream element bi 99.4 1.1E-13 3.9E-18 111.8 6.0 75 345-422 13-87 (94)
37 1we8_A Tudor and KH domain con 99.4 4.2E-13 1.4E-17 110.6 8.5 77 345-424 13-89 (104)
38 2opv_A KHSRP protein; KH domai 99.4 5.4E-13 1.9E-17 105.7 8.3 75 138-215 11-85 (85)
39 1j5k_A Heterogeneous nuclear r 99.4 2.4E-13 8.4E-18 108.7 5.5 74 137-215 10-83 (89)
40 1we8_A Tudor and KH domain con 99.4 4.2E-13 1.5E-17 110.6 6.5 87 137-226 11-97 (104)
41 1x4n_A FAR upstream element bi 99.4 4.5E-13 1.6E-17 107.8 6.3 74 138-216 12-85 (92)
42 1ec6_A RNA-binding protein NOV 99.4 2.8E-13 9.7E-18 107.9 5.0 73 141-216 3-76 (87)
43 1x4m_A FAR upstream element bi 99.4 3.3E-13 1.1E-17 109.1 5.5 77 137-216 11-87 (94)
44 2dgr_A Ring finger and KH doma 99.4 1.8E-13 6.3E-18 107.4 3.8 70 138-215 7-76 (83)
45 2hh2_A KH-type splicing regula 99.4 7.1E-13 2.4E-17 109.7 6.6 73 142-216 8-80 (107)
46 2hh3_A KH-type splicing regula 99.4 8.5E-13 2.9E-17 108.7 6.5 71 141-216 11-81 (106)
47 2ctm_A Vigilin; K homology typ 99.3 1.4E-12 4.6E-17 105.4 7.3 74 345-424 15-88 (95)
48 1vig_A Vigilin; RNA-binding pr 99.3 8.3E-13 2.8E-17 100.8 5.4 67 346-419 4-70 (71)
49 2cte_A Vigilin; K homology typ 99.3 1.3E-12 4.5E-17 105.5 6.3 72 345-423 15-86 (94)
50 2ctl_A Vigilin; K homology typ 99.3 3.3E-12 1.1E-16 103.6 7.8 72 346-421 16-87 (97)
51 2ctl_A Vigilin; K homology typ 99.3 3.3E-12 1.1E-16 103.6 5.6 73 139-215 15-87 (97)
52 1vig_A Vigilin; RNA-binding pr 99.3 3E-12 1E-16 97.7 4.9 67 140-213 4-70 (71)
53 2cte_A Vigilin; K homology typ 99.3 4.9E-12 1.7E-16 102.1 5.8 73 137-216 13-85 (94)
54 2ctm_A Vigilin; K homology typ 99.3 6E-12 2E-16 101.6 6.2 73 137-215 13-85 (95)
55 2ctk_A Vigilin; K homology typ 99.2 6.2E-12 2.1E-16 103.2 6.1 71 346-423 16-86 (104)
56 2ctk_A Vigilin; K homology typ 99.1 3.6E-11 1.2E-15 98.6 5.4 70 139-215 15-84 (104)
57 2ctj_A Vigilin; K homology typ 99.1 5.5E-11 1.9E-15 95.7 6.0 71 345-422 15-86 (95)
58 2ctf_A Vigilin; K homology typ 99.1 1.8E-10 6.3E-15 94.0 7.7 68 346-423 26-94 (102)
59 2ctj_A Vigilin; K homology typ 99.1 1.1E-10 3.8E-15 93.9 4.9 73 136-215 12-85 (95)
60 2ctf_A Vigilin; K homology typ 99.0 2.4E-10 8.2E-15 93.3 6.7 65 141-215 27-92 (102)
61 2cpq_A FragIle X mental retard 98.8 1.6E-09 5.5E-14 85.5 3.9 67 345-421 13-81 (91)
62 2cpq_A FragIle X mental retard 98.7 9.2E-09 3.2E-13 81.1 5.0 65 137-211 11-77 (91)
63 1k1g_A SF1-BO isoform; splicin 98.6 1.1E-07 3.9E-12 80.8 8.7 76 346-421 6-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.6 1.8E-07 6.1E-12 78.0 9.1 76 346-421 11-99 (119)
65 1k1g_A SF1-BO isoform; splicin 98.5 2.9E-07 9.8E-12 78.3 7.5 77 139-215 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.4 4.9E-07 1.7E-11 75.3 6.5 77 139-215 10-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.1 1.9E-06 6.6E-11 73.6 4.9 76 141-216 2-102 (140)
68 2bl5_A MGC83862 protein, quaki 98.1 4.1E-06 1.4E-10 71.5 5.4 74 347-420 2-100 (140)
69 3u1k_A Polyribonucleotide nucl 98.0 3.2E-06 1.1E-10 90.3 5.2 95 108-213 534-629 (630)
70 3v69_A Protein filia; RNA-bind 97.8 3.7E-05 1.3E-09 64.2 7.2 69 348-422 57-125 (140)
71 3u1k_A Polyribonucleotide nucl 97.6 2.3E-05 7.8E-10 83.7 3.6 65 344-419 564-629 (630)
72 2cxc_A NUSA; transcription ter 97.5 1.1E-05 3.6E-10 69.4 -0.5 109 40-178 32-140 (144)
73 4aid_A Polyribonucleotide nucl 97.5 4.7E-05 1.6E-09 82.2 3.9 97 108-215 537-634 (726)
74 2cxc_A NUSA; transcription ter 97.3 6.6E-05 2.3E-09 64.5 1.9 104 262-383 36-139 (144)
75 3v69_A Protein filia; RNA-bind 97.2 0.00053 1.8E-08 57.3 6.3 68 142-215 57-124 (140)
76 4aid_A Polyribonucleotide nucl 96.9 0.00034 1.2E-08 75.6 2.4 68 345-423 568-636 (726)
77 2asb_A Transcription elongatio 95.6 0.0093 3.2E-07 55.7 4.5 97 53-180 126-223 (251)
78 2asb_A Transcription elongatio 95.6 0.0094 3.2E-07 55.6 4.3 97 271-387 126-224 (251)
79 1k0r_A NUSA; two component arr 95.6 0.0048 1.6E-07 60.9 2.4 97 53-180 249-346 (366)
80 3cdi_A Polynucleotide phosphor 95.3 0.0041 1.4E-07 67.5 1.1 96 108-214 527-623 (723)
81 1k0r_A NUSA; two component arr 95.2 0.012 4.2E-07 58.0 4.2 96 271-386 249-346 (366)
82 1e3p_A Guanosine pentaphosphat 94.9 0.0022 7.6E-08 69.8 -2.3 94 108-213 566-660 (757)
83 1hh2_P NUSA, N utilization sub 93.7 0.04 1.4E-06 54.1 3.8 96 53-179 245-341 (344)
84 1hh2_P NUSA, N utilization sub 93.5 0.078 2.7E-06 52.1 5.4 96 271-385 245-341 (344)
85 3cdi_A Polynucleotide phosphor 93.1 0.016 5.6E-07 62.8 0.0 66 345-421 558-624 (723)
86 1e3p_A Guanosine pentaphosphat 90.1 0.016 5.4E-07 63.2 -4.3 63 346-419 597-660 (757)
87 2pt7_G HP1451, hypothetical pr 73.4 1.2 4.1E-05 38.3 1.5 30 45-74 34-63 (152)
88 2pt7_G HP1451, hypothetical pr 64.2 2.2 7.5E-05 36.6 1.2 65 142-215 34-98 (152)
89 1wh9_A 40S ribosomal protein S 61.9 2.5 8.4E-05 33.0 1.0 29 45-73 36-64 (92)
90 2kl8_A OR15; structural genomi 55.9 26 0.0009 24.8 5.3 28 395-422 40-67 (85)
91 1wh9_A 40S ribosomal protein S 52.2 4.2 0.00014 31.6 0.9 28 142-169 36-63 (92)
92 4hhu_A OR280; engineered prote 46.3 46 0.0016 26.6 6.0 47 368-423 104-150 (170)
93 4hhu_A OR280; engineered prote 41.0 1.4E+02 0.0047 23.9 10.8 97 88-215 42-148 (170)
94 3gku_A Probable RNA-binding pr 39.8 9.2 0.00031 35.0 1.2 34 45-78 93-126 (225)
95 3gku_A Probable RNA-binding pr 36.8 3.6 0.00012 37.6 -2.0 69 349-424 94-162 (225)
96 2ba0_A Archeal exosome RNA bin 31.5 74 0.0025 28.9 5.9 50 349-409 138-187 (229)
97 3dhx_A Methionine import ATP-b 30.4 77 0.0026 24.8 5.2 51 160-211 35-87 (106)
98 3j20_C 30S ribosomal protein S 28.0 15 0.00053 33.1 0.6 28 46-73 42-69 (210)
99 3u5c_D RP13, YS3, 40S ribosoma 27.5 15 0.00052 33.7 0.5 30 45-74 45-74 (240)
100 2ba0_A Archeal exosome RNA bin 27.5 70 0.0024 29.1 5.0 54 145-209 140-193 (229)
101 2xzm_C KH domain containing pr 27.2 20 0.00067 33.1 1.2 30 44-73 47-76 (243)
102 3iev_A GTP-binding protein ERA 25.3 24 0.00081 33.7 1.4 39 344-382 237-284 (308)
103 3u5c_D RP13, YS3, 40S ribosoma 25.1 23 0.00077 32.6 1.2 28 348-375 45-72 (240)
104 2z0s_A Probable exosome comple 24.9 1E+02 0.0036 28.0 5.7 52 349-411 150-202 (235)
105 3iz6_B 40S ribosomal protein S 24.7 16 0.00054 33.4 0.0 30 45-74 45-74 (227)
106 3iev_A GTP-binding protein ERA 24.4 23 0.00079 33.8 1.2 38 139-176 238-284 (308)
107 3dhx_A Methionine import ATP-b 24.2 1E+02 0.0034 24.1 4.8 54 365-418 34-88 (106)
108 2pk2_A Cyclin-T1, protein TAT; 24.0 26 0.00088 34.4 1.4 19 404-422 230-248 (358)
109 3j20_C 30S ribosomal protein S 22.7 25 0.00085 31.7 0.9 36 143-178 42-84 (210)
110 3r8n_C 30S ribosomal protein S 22.0 16 0.00055 32.8 -0.5 28 46-73 63-90 (206)
111 2xzm_C KH domain containing pr 22.0 32 0.0011 31.7 1.5 28 142-169 48-75 (243)
112 2zkq_c 40S ribosomal protein S 21.8 18 0.00063 33.3 -0.1 31 44-74 44-74 (243)
113 1twf_C B44.5, DNA-directed RNA 21.6 37 0.0013 32.7 2.0 18 405-422 241-258 (318)
114 3iz6_B 40S ribosomal protein S 21.6 23 0.00078 32.3 0.4 28 348-375 45-72 (227)
115 3i1m_C 30S ribosomal protein S 20.4 18 0.00063 33.1 -0.4 28 46-73 64-91 (233)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=4.1e-26 Score=205.75 Aligned_cols=155 Identities=25% Similarity=0.381 Sum_probs=130.4
Q ss_pred ceEEEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCC-CCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHH
Q 010746 43 DTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISET-VPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVH 121 (502)
Q Consensus 43 ~~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~-~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~ 121 (502)
.-+++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|++++ +.+|..+++
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~-------------v~~A~~~I~ 68 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA-------------QFKAQGRIY 68 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 4589999999999999999999999999999999999875 57889999999998765 567777777
Q ss_pred HHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHH
Q 010746 122 DRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAV 201 (502)
Q Consensus 122 ~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~ 201 (502)
+.+.+..... ......++++|+||.+++|+||||+|++|++|+++|||+|.|.++ ..|. ...++.|+|+|++++
T Consensus 69 ~~~~e~~~~~---~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~ 142 (163)
T 3krm_A 69 GKLKEENFFG---PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYA 142 (163)
T ss_dssp HHHHHTTSSC---SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHH
T ss_pred HHHhcccccc---cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHH
Confidence 7765542211 122345788999999999999999999999999999999999765 4454 134458999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 010746 202 VRKALVQIASRLHEN 216 (502)
Q Consensus 202 V~~A~~~I~~~l~~~ 216 (502)
|.+|+.+|.++|.+.
T Consensus 143 v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 143 SQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 2
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=1.8e-26 Score=211.19 Aligned_cols=161 Identities=27% Similarity=0.438 Sum_probs=129.0
Q ss_pred CCceEEEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCC---CCCCCccEEEEEcCCCCcccccCCccCCCHHHHHH
Q 010746 41 SEDTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISET---VPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDAL 117 (502)
Q Consensus 41 ~~~~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~---~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al 117 (502)
.+.++++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|+.++ +.+|+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~-------------v~~A~ 69 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA-------------LNAVH 69 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH-------------HHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH-------------HHHHH
Confidence 467999999999999999999999999999999999999854 46889999999998665 45565
Q ss_pred HHHHHHHhhhcccCC-----------CcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCccc
Q 010746 118 FRVHDRIVAEDSLAD-----------DEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCA 186 (502)
Q Consensus 118 ~~i~~~i~~~~~~~~-----------~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~ 186 (502)
.++.+.+........ .........+++|+||.+++|+||||+|++|++|+++|||+|+|.++.. +.
T Consensus 70 ~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~ 146 (178)
T 2anr_A 70 GFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GI 146 (178)
T ss_dssp HHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------
T ss_pred HHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CC
Confidence 555555432211000 0011223578999999999999999999999999999999999987633 33
Q ss_pred CCCCceEEEecCHHHHHHHHHHHHHHHhcCC
Q 010746 187 LSFDELLQVAGEPAVVRKALVQIASRLHENP 217 (502)
Q Consensus 187 ~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~ 217 (502)
.+.++.|+|+|++++|.+|+.+|.++|.++|
T Consensus 147 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 147 NLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999865
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=6.2e-26 Score=203.94 Aligned_cols=155 Identities=35% Similarity=0.515 Sum_probs=129.5
Q ss_pred CceEEEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHH
Q 010746 42 EDTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVH 121 (502)
Q Consensus 42 ~~~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~ 121 (502)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+.++ +.+|..++.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~-------------v~~A~~~I~ 67 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA-------------IFKAFAMII 67 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH-------------HHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH-------------HHHHHHHHH
Confidence 56889999999999999999999999999999999999976 678999999998665 456766676
Q ss_pred HHHhhhcccCCC--cCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCH
Q 010746 122 DRIVAEDSLADD--EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199 (502)
Q Consensus 122 ~~i~~~~~~~~~--~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~ 199 (502)
+.+.+....... .......++++|+||.+++|+||||+|.+|++|+++|||+|.|.++ .+|. +.++.|+|+|++
T Consensus 68 ~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~~---~~~~~v~I~G~~ 143 (160)
T 2jzx_A 68 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLPN---STERAITIAGIP 143 (160)
T ss_dssp HHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CSTT---CCEEEEEEEECH
T ss_pred HHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCCC---CCceEEEEEcCH
Confidence 666543221100 0122346899999999999999999999999999999999999765 4454 678999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010746 200 AVVRKALVQIASRLHE 215 (502)
Q Consensus 200 ~~V~~A~~~I~~~l~~ 215 (502)
++|.+|+.+|.+++.+
T Consensus 144 ~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 144 QSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999876
No 4
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=4.9e-25 Score=201.59 Aligned_cols=174 Identities=22% Similarity=0.398 Sum_probs=134.3
Q ss_pred CccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecC-CCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE-HLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 138 ~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~-~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
...++++|+||.+++|.||||+|++|++|+++|||+|+|.++. ..|. +.+|+|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~---~~er~v~I~G~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG---TTERVCLIQGTIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT---SSEEEEEEEECHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC---CCCceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999999999999998653 2443 67899999999999999999999999774
Q ss_pred CCccccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCCccccccccCcccccchhhhcCCeEE
Q 010746 217 PSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIK 296 (502)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~ 296 (502)
+.... ... + +.
T Consensus 80 ~~~~~------------------------------------~~~--------~-------------------------~~ 90 (178)
T 2anr_A 80 PQNVA------------------------------------KTE--------P-------------------------VS 90 (178)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCccc------------------------------------cCC--------c-------------------------cc
Confidence 22100 000 0 00
Q ss_pred ecCCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEEEEEecCCceeeeeCCCchhHHHHHHHh
Q 010746 297 VDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSAT 376 (502)
Q Consensus 297 v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~t 376 (502)
+.... . . .......+.+|.||.+++|+||||+|++|++|+++|
T Consensus 91 ~~~~~-----------~---------~-----------------~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~t 133 (178)
T 2anr_A 91 ILQPQ-----------T---------T-----------------VNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQS 133 (178)
T ss_dssp ----------------------------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHS
T ss_pred ccCCc-----------c---------C-----------------CCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHH
Confidence 00000 0 0 001123678999999999999999999999999999
Q ss_pred CCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhch
Q 010746 377 RASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (502)
Q Consensus 377 Ga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 423 (502)
||+|+|.+....| .++++.|+|+|++++|+.|+.+|.++|++++
T Consensus 134 ga~I~i~~~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 134 GAWVQLSQKPDGI---NLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp SCEEEECCCC-------CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 9999997654333 4678999999999999999999999998754
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.92 E-value=4.8e-25 Score=200.84 Aligned_cols=156 Identities=23% Similarity=0.355 Sum_probs=123.0
Q ss_pred ceEEEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHHH
Q 010746 43 DTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHD 122 (502)
Q Consensus 43 ~~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~~ 122 (502)
..+++|+||.+++|.||||+|++|++|+++|+|+|+|.+..+++++|+|+|+|+.++ +.+|+.+|.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~~ 68 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR-------------AQHAAEIITD 68 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH-------------HHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH-------------HHHHHHHHHH
Confidence 467999999999999999999999999999999999987666888999999998766 3445555544
Q ss_pred HHhhhcccC---C-----------Cc---CCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcc
Q 010746 123 RIVAEDSLA---D-----------DE---FGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185 (502)
Q Consensus 123 ~i~~~~~~~---~-----------~~---~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 185 (502)
.+....... . .+ ......++++|+||.+++|+||||+|++|++|+++|||+|+|.++. +.+
T Consensus 69 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~ 146 (174)
T 1j4w_A 69 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPN 146 (174)
T ss_dssp HHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTT
T ss_pred HHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCC
Confidence 443221000 0 00 0012346889999999999999999999999999999999998752 334
Q ss_pred cCCCCceEEEecCHHHHHHHHHHHHHHH
Q 010746 186 ALSFDELLQVAGEPAVVRKALVQIASRL 213 (502)
Q Consensus 186 ~~~~er~v~I~G~~~~V~~A~~~I~~~l 213 (502)
..+.++.|+|+|++++|.+|+.+|.++|
T Consensus 147 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 5577899999999999999999998864
No 6
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=200.36 Aligned_cols=154 Identities=25% Similarity=0.377 Sum_probs=124.0
Q ss_pred eEEEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCC--CCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHH
Q 010746 44 TVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISET--VPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVH 121 (502)
Q Consensus 44 ~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~--~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~ 121 (502)
++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .++..+|+|+|+|++++ +..|+..|.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~ 68 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK-------------VQQACEMVM 68 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH-------------HHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 689999999999999999999999999999999999754 35677999999998665 456666666
Q ss_pred HHHhhhcc---cCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecC
Q 010746 122 DRIVAEDS---LADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGE 198 (502)
Q Consensus 122 ~~i~~~~~---~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~ 198 (502)
+.+.+... ....+......++++|+||.+++|+||||+|.+|++|+++|||+|.|.+.+ + .+.++.|+|+|+
T Consensus 69 ~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~ 143 (164)
T 2jvz_A 69 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGP 143 (164)
T ss_dssp HHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESC
T ss_pred HHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcC
Confidence 65543221 000111111135688999999999999999999999999999999998762 2 256899999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010746 199 PAVVRKALVQIASRLHE 215 (502)
Q Consensus 199 ~~~V~~A~~~I~~~l~~ 215 (502)
+++|.+|+.+|.++|.+
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998875
No 7
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=194.58 Aligned_cols=155 Identities=27% Similarity=0.439 Sum_probs=129.8
Q ss_pred EEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCCCcc
Q 010746 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPSRS 220 (502)
Q Consensus 141 ~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~~~ 220 (502)
.+++|+||.+.+|.||||+|++|++|+++|||+|+|.++ ..| .+.+|+|+|+|+++++.+|+.+|.+++.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~-~~~---~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~-- 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP-ETP---DSKVRMVIITGPPEAQFKAQGRIYGKLKEENF-- 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC-SST---TCSEEEEEEEECHHHHHHHHHHHHHHHHHTTS--
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC-CCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcccc--
Confidence 488999999999999999999999999999999999875 233 37899999999999999999999998876310
Q ss_pred ccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCCccccccccCcccccchhhhcCCeEEecCC
Q 010746 221 QHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSS 300 (502)
Q Consensus 221 ~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~v~~~ 300 (502)
+ -| .
T Consensus 77 -----------~-----------------------------------~~-----------------------------~- 80 (163)
T 3krm_A 77 -----------F-----------------------------------GP-----------------------------K- 80 (163)
T ss_dssp -----------S-----------------------------------CS-----------------------------S-
T ss_pred -----------c-----------------------------------cc-----------------------------c-
Confidence 0 00 0
Q ss_pred CCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeE
Q 010746 301 GAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASI 380 (502)
Q Consensus 301 ~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I 380 (502)
.....+.+|.||.+++|+|||++|++|++|++.|||+|
T Consensus 81 ------------------------------------------~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I 118 (163)
T 3krm_A 81 ------------------------------------------EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV 118 (163)
T ss_dssp ------------------------------------------CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEE
T ss_pred ------------------------------------------cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeE
Confidence 00135678999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 381 RILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 381 ~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
+|++. ..|. ..+++.|+|+|++++|+.|+.+|.++|++.
T Consensus 119 ~i~~~-~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 119 VVPRD-QTPD--ENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp ECCTT-CCCC--TTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EECCC-CCCC--CCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 99654 3443 344558999999999999999999999874
No 8
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=7.1e-24 Score=191.33 Aligned_cols=160 Identities=23% Similarity=0.390 Sum_probs=128.5
Q ss_pred EEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCCCcc
Q 010746 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPSRS 220 (502)
Q Consensus 141 ~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~~~ 220 (502)
++.+|+||.+++|+||||+|++|++|+++|||+|+|.++...+ ...+|.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRERDQG- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS---SSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC-
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC-
Confidence 5789999999999999999999999999999999998763222 367899999999999999999999988763110
Q ss_pred ccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCCccccccccCcccccchhhhcCCeEEecCC
Q 010746 221 QHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSS 300 (502)
Q Consensus 221 ~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~v~~~ 300 (502)
.|. |.. .++
T Consensus 78 ----------~~~-----------------------------------~~~------------------~~~-------- 86 (164)
T 2jvz_A 78 ----------GFG-----------------------------------DRN------------------EYG-------- 86 (164)
T ss_dssp ----------CCS-----------------------------------SCS------------------SCT--------
T ss_pred ----------CCC-----------------------------------Ccc------------------ccC--------
Confidence 000 000 000
Q ss_pred CCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeE
Q 010746 301 GAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASI 380 (502)
Q Consensus 301 ~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I 380 (502)
. ....+.+|.||.+++|+||||+|++|++|+++|||+|
T Consensus 87 -------------~-----------------------------~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I 124 (164)
T 2jvz_A 87 -------------S-----------------------------RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 124 (164)
T ss_dssp -------------T-----------------------------SCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEE
T ss_pred -------------C-----------------------------CCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeE
Confidence 0 0012356889999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 381 RILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 381 ~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
+|.+.+ + .+.++.|+|+|++++|+.|+.+|.++|++.
T Consensus 125 ~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 125 QFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp EECCCC--T---TSSEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCC--C---CCCcEEEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 997642 2 356799999999999999999999999763
No 9
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.90 E-value=5.4e-24 Score=191.26 Aligned_cols=157 Identities=27% Similarity=0.520 Sum_probs=130.4
Q ss_pred ccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCCC
Q 010746 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPS 218 (502)
Q Consensus 139 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~ 218 (502)
.+++++|+||.+.+|.||||+|++|++|+++|||+|+|.... ..+|.|+|+|++++|.+|+.+|.+++.+...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~-------~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~ 75 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-------CPERIITLAGPTNAIFKAFAMIIDKLEEDIS 75 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCT-------TTEEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCC-------CCceEEEEEeCHHHHHHHHHHHHHHHHhhcc
Confidence 467999999999999999999999999999999999998651 4589999999999999999999998876210
Q ss_pred ccccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCCccccccccCcccccchhhhcCCeEEec
Q 010746 219 RSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVD 298 (502)
Q Consensus 219 ~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~v~ 298 (502)
. . .+. +
T Consensus 76 ~-----------------------------------------~------~~~-----------~---------------- 81 (160)
T 2jzx_A 76 S-----------------------------------------S------MTN-----------S---------------- 81 (160)
T ss_dssp S-----------------------------------------C------CCS-----------S----------------
T ss_pred c-----------------------------------------c------CCC-----------C----------------
Confidence 0 0 000 0
Q ss_pred CCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEEEEEecCCceeeeeCCCchhHHHHHHHhCC
Q 010746 299 SSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRA 378 (502)
Q Consensus 299 ~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa 378 (502)
. . ......+.+|.||.+++|+|||++|++|++|+++|||
T Consensus 82 --~-----------~----------------------------~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga 120 (160)
T 2jzx_A 82 --T-----------A----------------------------ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 120 (160)
T ss_dssp --S-----------C----------------------------CCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSS
T ss_pred --c-----------c----------------------------CCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCC
Confidence 0 0 0012367899999999999999999999999999999
Q ss_pred eEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 379 SIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 379 ~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
+|+|.+. .+| .++++.|+|+|++++|+.|+.+|.+.|.+
T Consensus 121 ~I~i~~~-~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 121 QVQVAGD-MLP---NSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EECCCCC-CST---TCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEECCC-CCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 9999653 344 46789999999999999999999999876
No 10
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=1.5e-23 Score=191.05 Aligned_cols=173 Identities=20% Similarity=0.334 Sum_probs=128.0
Q ss_pred cEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCCCc
Q 010746 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPSR 219 (502)
Q Consensus 140 ~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~~~ 219 (502)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+.+ + ...+|+|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--G---TTPERIAQITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--T---SCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 35789999999999999999999999999999999997642 2 256899999999999999999999999873210
Q ss_pred cccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCCccccccccCcccccchhhhcCCeEEecC
Q 010746 220 SQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDS 299 (502)
Q Consensus 220 ~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~v~~ 299 (502)
.+.+ + -|.. .-.++ ..
T Consensus 77 -----------~~~~------------------~--------------~p~~---~~~~~-------~~----------- 92 (174)
T 1j4w_A 77 -----------NPGG------------------P--------------GPGG---RGRGR-------GQ----------- 92 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------CCCC------------------C--------------CCCC---CCCCC-------CC-----------
Confidence 0000 0 0000 00000 00
Q ss_pred CCCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCe
Q 010746 300 SGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRAS 379 (502)
Q Consensus 300 ~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~ 379 (502)
..+.. .......+.+|.||.+++|+||||+|++|++|+++|||+
T Consensus 93 ---------------~~~~~---------------------~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~ 136 (174)
T 1j4w_A 93 ---------------GNWNM---------------------GPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGAR 136 (174)
T ss_dssp -----------------------------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCE
T ss_pred ---------------Ccccc---------------------CCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCE
Confidence 00000 000123578999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 010746 380 IRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRL 419 (502)
Q Consensus 380 I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 419 (502)
|+|.+. .+++.+++++.|+|+|++++|+.|+.+|.++|
T Consensus 137 I~i~~~--~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 137 IELQRN--PPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEECC--CTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred EEECCC--CCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 999764 23344577899999999999999999998864
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=6.5e-23 Score=203.78 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=155.4
Q ss_pred CCCccEEEEEEeeCCceeeeecCCC--hHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHH
Q 010746 136 GELTLITVRMLVPADQIGCVIGKGG--QVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRL 213 (502)
Q Consensus 136 ~~~~~~~~~llVp~~~vg~IIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l 213 (502)
.....+|+++-||..+|++||||+| ++|++|+++|+|+|+|+..+.-..........|+|+|.+++|++|+.+|.+++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999 99999999999999997652000011134567999999999999999887733
Q ss_pred hcCCCccccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCCccccccccCcccccchhhhcCC
Q 010746 214 HENPSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGA 293 (502)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga 293 (502)
. +++.+.+|...+.. ......|.+ ++.+++
T Consensus 105 P-----------------------------------------------l~i~~elp~~~i~~--~~l~~~I~q-q~~y~V 134 (376)
T 3n89_A 105 H-----------------------------------------------FTVFMALSKMKMPL--HELQAHVRQ-NPIQNV 134 (376)
T ss_dssp E-----------------------------------------------EEEEEECTTCSSCH--HHHHHHHHH-CCCTTC
T ss_pred C-----------------------------------------------ceEEEEccccccCc--chhhhhhcc-ceeCce
Confidence 1 13344444432221 011223433 567999
Q ss_pred eEEecCCCCC--CCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEEEEEecCCceeeeeCCCc--hhH
Q 010746 294 SIKVDSSGAE--GDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGG--AII 369 (502)
Q Consensus 294 ~I~v~~~~~~--~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G--~~I 369 (502)
+|.|+..... .....|+|.|.+. +...+.+|+..+...+.+. .......++..|.|+..+|..|||++| ..|
T Consensus 135 ~I~Fp~~~~~~~~~sd~V~IrG~~~--nv~~akeA~~~Ll~~l~~~--e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~I 210 (376)
T 3n89_A 135 EMSFVDAPEKNGIVTTYLRITAREK--NQHELIEAAKRLNEILFRE--SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLM 210 (376)
T ss_dssp EEEEEEEC-----CEEEEEEEEEGG--GHHHHHHHHHHHHHHHCC----CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHH
T ss_pred EEEeCCcccccCCCCCEEEEEcChh--hHHHHHHHHHHHHHHHHhh--hcccccceEEEEEeCHHHHHHhhcCCCcchHH
Confidence 9999764321 1256788888641 0112334433333222221 111234689999999999999999999 667
Q ss_pred HHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 370 SEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 370 k~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
++|+++|||+|.++..++ +.........|+|+|++++|..|+.+|+++|=-
T Consensus 211 kkIr~eTGv~I~FP~~~d-~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLPv 261 (376)
T 3n89_A 211 PVIERETTTIISYPCYNN-RNETRGNIYEIKVVGNIDNVLKARRYIMDLLPI 261 (376)
T ss_dssp HHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHHTSEE
T ss_pred HHHHHhhCCEEECCCCCC-cccccCCceEEEEEeCHHHHHHHHHHHHhhCCE
Confidence 999999999999975432 110112456899999999999999999988744
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.84 E-value=4.9e-21 Score=190.32 Aligned_cols=286 Identities=11% Similarity=0.060 Sum_probs=177.9
Q ss_pred CCCCceEEEEEecCCceeeeecCCh--hHHHHHHHhhCCeEEecCCC-----CCCCccEEEEEcCCCCcccccCCccCCC
Q 010746 39 IGSEDTVYRYLCPLRKIGSIIGKGG--EIVKQLRSETKSNIRISETV-----PGCDERIVTIYSSSEGTNLFEDSGEFVS 111 (502)
Q Consensus 39 ~~~~~~~~~i~vp~~~~g~iIGk~G--~~I~~I~~~tga~I~i~~~~-----~~~~ervv~I~G~~e~~~~~~~~~~~~~ 111 (502)
.....+++++.||..+|++||||+| ++|++|+++|+|+|+|++.. +......|+|+|.+++|
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enV----------- 93 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDV----------- 93 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHH-----------
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHH-----------
Confidence 3467899999999999999999999 99999999999999999764 11345789999998885
Q ss_pred HHHHHHHHHHHHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCc
Q 010746 112 PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191 (502)
Q Consensus 112 ~a~~al~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er 191 (502)
++|..++.+. ..+++.+-+|...+.. ..-...|.. ++.++++|.|....... .....
T Consensus 94 --E~AR~~I~~l---------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~---~~~sd 150 (376)
T 3n89_A 94 --DRARMLMRRN---------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN---GIVTT 150 (376)
T ss_dssp --HHHHHHHHHS---------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEE
T ss_pred --HHHHHHHHhc---------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc---CCCCC
Confidence 3344444331 1335555556543222 111234544 67899999997652211 11245
Q ss_pred eEEEecCHHHHHHHHHHHHHHHhcCCCccccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCC
Q 010746 192 LLQVAGEPAVVRKALVQIASRLHENPSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAG 271 (502)
Q Consensus 192 ~v~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~ 271 (502)
.|+|+|...+|.+|++++..++..-.... ......+++.|.|+..
T Consensus 151 ~V~IrG~~~nv~~akeA~~~Ll~~l~~~e-----------------------------------~~~~~~~s~~v~V~~~ 195 (376)
T 3n89_A 151 YLRITAREKNQHELIEAAKRLNEILFRES-----------------------------------PAPENNFTLHFTLSTY 195 (376)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHCC-------------------------------------CCCSSCEEEEEEEEGG
T ss_pred EEEEEcChhhHHHHHHHHHHHHHHHHhhh-----------------------------------cccccceEEEEEeCHH
Confidence 79999999777766655555443311100 0123457889999999
Q ss_pred ccccccccCccc--ccchhhhcCCeEEecCCCCC----CCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCc
Q 010746 272 NIGGVIGKGGGI--IKQIRQESGASIKVDSSGAE----GDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDP 345 (502)
Q Consensus 272 ~~g~IIGk~G~~--Ik~i~~~sga~I~v~~~~~~----~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 345 (502)
++..|||++|.+ |++|+++|||+|.||+..+. .....|+|+|.. ..+++|.+....+ -
T Consensus 196 ~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~------e~V~~Ark~I~~l----------L 259 (376)
T 3n89_A 196 YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNI------DNVLKARRYIMDL----------L 259 (376)
T ss_dssp GHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCH------HHHHHHHHHHHHT----------S
T ss_pred HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCH------HHHHHHHHHHHhh----------C
Confidence 999999999955 59999999999999975432 235688999874 3444444433222 2
Q ss_pred eeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCC---ceEEEEEcCHHHHH
Q 010746 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYED---EEMVQITGSLDVAS 409 (502)
Q Consensus 346 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~---~r~v~I~G~~~~v~ 409 (502)
.+...+.++.+..-.-.-.--..|..+.++.++-|.|.++.-.|..--++ -..|.|..-.-++.
T Consensus 260 Pv~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~n~~ 326 (376)
T 3n89_A 260 PISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCASLRSKEFNIK 326 (376)
T ss_dssp EEEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEEEECCSSSSCCCEEEEEEEEEEEGGGHH
T ss_pred CEEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeecCCCchhhcccccccceEEEEEEeccHH
Confidence 46677776654332223333333445668889999997764323100111 13577777444443
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.75 E-value=3.2e-18 Score=149.92 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=101.2
Q ss_pred cceEEEeccCCccccccccCcccccchhhhcCCeEEecCCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCcccccccc
Q 010746 261 EFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTER 340 (502)
Q Consensus 261 ~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (502)
.++.++.||.+.+|++||++|++|++|++++|+.+..+... .+.++...... ..+..+..+..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~---~~~~i~~~~~p------~~v~~~~~~l~-------- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDED---TCTFHIYGEDQ------DAVKKARSFLE-------- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETT---TTEEEEEESSH------HHHHHHHHHHC--------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCC---chheeeccCCH------HHHHHHHHhhh--------
Confidence 46789999999999999999999999999999544333322 33343333321 23333322211
Q ss_pred CCCCceeEEEEEecCCceeeeeCCCchhHHHHHHHhCC-eEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 010746 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRA-SIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRL 419 (502)
Q Consensus 341 ~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa-~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 419 (502)
..+.++.||.+++|++|||+|.+|+.|++.||| +|+|.+.++......+..+.|+|+|++++|+.|+.+|.++|
T Consensus 66 -----~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 66 -----FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHL 140 (144)
T ss_dssp -----EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -----cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHH
Confidence 124889999999999999999999999999997 99998754321101112246899999999999999999998
Q ss_pred Hh
Q 010746 420 RA 421 (502)
Q Consensus 420 ~~ 421 (502)
..
T Consensus 141 ~~ 142 (144)
T 2qnd_A 141 NY 142 (144)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.74 E-value=6.8e-18 Score=147.85 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=100.3
Q ss_pred ceEEEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCCCCCCCccEEEEEc-CCCCcccccCCccCCCHHHHHHHHHH
Q 010746 43 DTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYS-SSEGTNLFEDSGEFVSPAQDALFRVH 121 (502)
Q Consensus 43 ~~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G-~~e~~~~~~~~~~~~~~a~~al~~i~ 121 (502)
.++.+|+||.+.+|++||++|++|++|++++| |++.... ..+++ +++.+ +++. +.++.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~-~i~~~~~p~~-----------------v~~~~ 61 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCT-FHIYGEDQDA-----------------VKKAR 61 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTE-EEEEESSHHH-----------------HHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchh-eeeccCCHHH-----------------HHHHH
Confidence 56889999999999999999999999999999 5443221 12344 44544 3332 22221
Q ss_pred HHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCc-eEEEeecCCCCcccCCCCc--eEEEecC
Q 010746 122 DRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRA-QIRILKDEHLPLCALSFDE--LLQVAGE 198 (502)
Q Consensus 122 ~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~er--~v~I~G~ 198 (502)
..+ . + .++++.||.+++|++|||+|++|+.|++.||| +|+|..+++... ...++ .|+|+|+
T Consensus 62 ~~l-~--~-----------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~ 125 (144)
T 2qnd_A 62 SFL-E--F-----------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGT 125 (144)
T ss_dssp HHH-C--E-----------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEE
T ss_pred Hhh-h--c-----------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeC
Confidence 111 0 0 13789999999999999999999999999997 999998643211 12344 4899999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010746 199 PAVVRKALVQIASRLHE 215 (502)
Q Consensus 199 ~~~V~~A~~~I~~~l~~ 215 (502)
+++|.+|+.+|.++|.+
T Consensus 126 ~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 126 KDSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999865
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.65 E-value=4e-16 Score=145.21 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=109.5
Q ss_pred ccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecC-----HHHHHHHHHHHHHHH
Q 010746 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGE-----PAVVRKALVQIASRL 213 (502)
Q Consensus 139 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~-----~~~V~~A~~~I~~~l 213 (502)
.+...++.||.+.++.|||++|.+|+.|+++|||+|.|..+ ++.|+|.++ ++++.+|+.+|.++.
T Consensus 32 aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~----------~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 32 FKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE----------TGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp -CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT----------TCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC----------CCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 34467899999999999999999999999999999999643 456888875 699999999999987
Q ss_pred hcCCCccccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCCccccccccCcccccchhhhcCC
Q 010746 214 HENPSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGA 293 (502)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga 293 (502)
....... +.++ +.++..+
T Consensus 102 rg~~~e~-----------------------------------------------------g~~l---------l~dd~~~ 119 (219)
T 2e3u_A 102 RGFSPER-----------------------------------------------------AFRL---------LNEGEYL 119 (219)
T ss_dssp TTCCHHH-----------------------------------------------------HGGG---------GSTTCEE
T ss_pred ccCCccc-----------------------------------------------------ccee---------ccCCccc
Confidence 5311000 0000 0000000
Q ss_pred eEEecCCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEEEEEecCCceeeeeCCCchhHHHHH
Q 010746 294 SIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMR 373 (502)
Q Consensus 294 ~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~ 373 (502)
. ++.+..- .+...-..+...+|+||||+|++|+.|+
T Consensus 120 e-------------~i~i~~~-------------------------------~v~~~~~~~~r~~GriIGk~G~tik~ie 155 (219)
T 2e3u_A 120 E-------------IINLTDI-------------------------------IIGNEKNALPRVRGRIIGRKGRTRQIIE 155 (219)
T ss_dssp E-------------EEEGGGC-------------------------------C------CHHHHHHHHHCGGGHHHHHHH
T ss_pred e-------------eEEcccc-------------------------------cccCCchhhhhhhheeECCCchHHHHHH
Confidence 0 0000000 0000001123468999999999999999
Q ss_pred HHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 374 SATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 374 ~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
+.|||+|.|.. +.|+|.|++++|+.|..+|+++|..
T Consensus 156 ~~Tg~~I~v~~------------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 156 EMSGASVSVYG------------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHCCEEEEET------------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HHhCceEEECC------------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 99999999952 3799999999999999999999965
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.64 E-value=2.6e-16 Score=146.50 Aligned_cols=144 Identities=22% Similarity=0.195 Sum_probs=104.0
Q ss_pred ceEEEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHHH
Q 010746 43 DTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHD 122 (502)
Q Consensus 43 ~~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~~ 122 (502)
.-..++.||.+.++.|||++|++|+.|+++|||+|+|+.. ++.|+|+++...- ....+++|...|..
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~--------d~~~i~kA~~~I~~ 99 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETE--------DPLAVWKARDIVLA 99 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCC--------SHHHHHHHHHHHHH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCC--------CHHHHHHHHHHHHH
Confidence 3456999999999999999999999999999999999743 5789999864210 01124555555544
Q ss_pred HHhh------hcccCCCcCCCCccEEEEEEe-----eC------CceeeeecCCChHHHHHHhhcCceEEEeecCCCCcc
Q 010746 123 RIVA------EDSLADDEFGELTLITVRMLV-----PA------DQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185 (502)
Q Consensus 123 ~i~~------~~~~~~~~~~~~~~~~~~llV-----p~------~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 185 (502)
.+.. ..+..+ + ...-.+-+ +. ..+|+||||+|.+|+.|++.|||+|.|..
T Consensus 100 i~rg~~~e~g~~ll~d---d---~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------- 166 (219)
T 2e3u_A 100 IGRGFSPERAFRLLNE---G---EYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------- 166 (219)
T ss_dssp HHTTCCHHHHGGGGST---T---CEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET-------
T ss_pred HhccCCccccceeccC---C---ccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC-------
Confidence 3310 111111 0 11111222 21 26899999999999999999999999952
Q ss_pred cCCCCceEEEecCHHHHHHHHHHHHHHHhcCC
Q 010746 186 ALSFDELLQVAGEPAVVRKALVQIASRLHENP 217 (502)
Q Consensus 186 ~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~~ 217 (502)
+.|+|.|+.++|+.|..+|.++|...+
T Consensus 167 -----~~v~i~G~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 167 -----KTVAIIGNPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp -----TEEEEEECHHHHHHHHHHHHHHHTTCC
T ss_pred -----eEEEEEeCHHHHHHHHHHHHHHHcCCC
Confidence 469999999999999999999996643
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6.4e-15 Score=122.04 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=64.2
Q ss_pred EEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 348 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
+.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. .| ..+.++++|+|+|++++|+.|+.+|.++|++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999997642 22 23457899999999999999999999998663
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.54 E-value=5.3e-15 Score=113.73 Aligned_cols=70 Identities=23% Similarity=0.437 Sum_probs=64.4
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
..++.+|+||.+++|+|||++|++|++|+++|||+|+|.+. +..+|.|+|.|++++|..|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999754 24689999999999999999999999976
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.53 E-value=1.2e-14 Score=113.02 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=64.0
Q ss_pred eEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 347 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
.+.+|.||.+++|+|||++|++|++|++.|||+|+|.+..+.. .++.++.|+|+|++++|+.|+.+|.++|.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999998653322 246789999999999999999999998754
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.53 E-value=2.2e-14 Score=113.05 Aligned_cols=73 Identities=29% Similarity=0.514 Sum_probs=65.9
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .| +++++.|+|+|++++|+.|+.+|.+++++.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999642 22 467899999999999999999999999874
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=112.73 Aligned_cols=73 Identities=34% Similarity=0.528 Sum_probs=65.6
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
..++.+|.||.+++|+|||++|++|++|++.|||+|+|.+. .| +++++.|+|+|++++|+.|+.+|.+.|++.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--VE---GSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT---TCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--CC---CCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 35789999999999999999999999999999999999752 22 578999999999999999999999998763
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=1.9e-14 Score=113.46 Aligned_cols=73 Identities=36% Similarity=0.498 Sum_probs=64.7
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .| +++++.|+|+|++++|+.|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--VE---GSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT---TCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--CC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999753 22 568999999999999999999999999775
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.50 E-value=1.4e-14 Score=111.30 Aligned_cols=70 Identities=29% Similarity=0.553 Sum_probs=64.9
Q ss_pred ccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 139 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.++ ...+|+|+|.|++++|.+|+.+|.++|.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999865 14689999999999999999999999986
No 24
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-14 Score=117.67 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=64.0
Q ss_pred eEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhch
Q 010746 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (502)
Q Consensus 347 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 423 (502)
.+.+|.||.+++++||||+|++||+|+++|||+|+|.+++ + .+.+|.|+|+|++++|++|+.+|.+++++..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999997542 1 3568999999999999999999999998753
No 25
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.50 E-value=7.6e-14 Score=126.54 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=110.2
Q ss_pred EEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEe-----cCHHHHHHHHHHHHHHHhcC
Q 010746 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVA-----GEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 142 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~-----G~~~~V~~A~~~I~~~l~~~ 216 (502)
..+++||...+|.|||++|++++.|++.++++|++... ++.|+|. |++.++.+|..+|..+.+..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~----------~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE----------NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT----------TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC----------CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999999999999643 5678888 99999999999998888753
Q ss_pred CCccccccccCCCCccCCCCccccCCCcCCCCCCCcccCccccccceEEEeccCCccccccccCcccccchhhhcCCeEE
Q 010746 217 PSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIK 296 (502)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~ 296 (502)
+......+ ..+.+.+.
T Consensus 75 ~~e~A~~L---------------------------------l~Dd~~~e------------------------------- 90 (191)
T 1tua_A 75 PPEKAFRL---------------------------------LEEDQILV------------------------------- 90 (191)
T ss_dssp CHHHHGGG---------------------------------GSTTEEEE-------------------------------
T ss_pred CHHHhhhc---------------------------------ccCcceeE-------------------------------
Confidence 21100000 00000000
Q ss_pred ecCCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEEEEEecCCceeeeeCCCchhHHHHHHHh
Q 010746 297 VDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSAT 376 (502)
Q Consensus 297 v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~t 376 (502)
++.+. ..... . -..+...+|+|||++|.+|+.|+..|
T Consensus 91 -----------~i~i~-------------~~~~~------------~-------~~~~~r~~GrIIGk~G~tik~iE~~T 127 (191)
T 1tua_A 91 -----------VVDLK-------------QVVGD------------S-------QNHLKRIKGRIIGEGGRARRTIEEMT 127 (191)
T ss_dssp -----------EEETH-------------HHHTT------------C-------HHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -----------EEEcc-------------ccccc------------C-------chhHHHHhhheeCCCccHHHHHHHHH
Confidence 00000 00000 0 00124578999999999999999999
Q ss_pred CCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 377 RASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 377 Ga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
||+|.|.. ..|.|.|++++++.|...|..+|..
T Consensus 128 g~~I~v~~------------~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 128 DTYINVGE------------YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp TCEEEECS------------SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CceEEEcC------------CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 99999942 2799999999999999999999864
No 26
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=2.3e-14 Score=114.28 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=67.2
Q ss_pred eEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhchhc
Q 010746 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFE 425 (502)
Q Consensus 347 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~ 425 (502)
.+.+|.||.+++|+|||++|++|++|++.|||+|+|.+..+.. .++.++.|+|+|++++|+.|+.+|.++|.+....
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc
Confidence 5789999999999999999999999999999999997653321 2467899999999999999999999999886543
No 27
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.48 E-value=3e-14 Score=114.06 Aligned_cols=75 Identities=29% Similarity=0.530 Sum_probs=67.2
Q ss_pred CCceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 343 ~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
....++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .| +++++.|+|+|++++|+.|+.+|.+++++.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4467899999999999999999999999999999999999642 22 467899999999999999999999999874
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=109.25 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=64.8
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
...+.+|.||.+++|+||||+|++|++|+++|||+|.|.++...+ .+.+|.|+|+|++++++.|+.+|.+++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 356789999999999999999999999999999999997643222 46789999999999999999999998853
No 29
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.46 E-value=7.6e-14 Score=112.36 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=65.8
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. + +..++.|+|+|++++|+.|+.+|.++|++.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999997542 2 457899999999999999999999999874
No 30
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.45 E-value=6.7e-14 Score=126.89 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=101.9
Q ss_pred EEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHHHHHh
Q 010746 46 YRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIV 125 (502)
Q Consensus 46 ~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~~~i~ 125 (502)
++++||...+|.|||++|++++.|+++++|+|.++.. ++.|+|..+.+.-. ...+++|...|.....
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~-----~~~V~i~t~~~t~d--------p~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE-----NSMVIVEPEAEGIP--------PVNLMKAAEVVKAISL 72 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT-----TTEEEEEESSTTSC--------HHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC-----CCeEEEEeCCCCCC--------HHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999999754 78899985433210 1113444433332211
Q ss_pred hhcccCCCc-CCCCccEEEE-EEee----------CCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceE
Q 010746 126 AEDSLADDE-FGELTLITVR-MLVP----------ADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193 (502)
Q Consensus 126 ~~~~~~~~~-~~~~~~~~~~-llVp----------~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v 193 (502)
.+..++. .-..+.+.+. +-++ ....|+||||+|.+|+.|++.|||+|.|.. +.|
T Consensus 73 --gf~~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------------~~v 138 (191)
T 1tua_A 73 --GFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------------YEV 138 (191)
T ss_dssp --TCCHHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------------SEE
T ss_pred --CCCHHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------------CEE
Confidence 1110000 0001122333 2233 235899999999999999999999999942 379
Q ss_pred EEecCHHHHHHHHHHHHHHHhcC
Q 010746 194 QVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 194 ~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
.|.|+.++++.|...|++++...
T Consensus 139 ~i~G~~~~i~~Ar~~i~~li~g~ 161 (191)
T 1tua_A 139 AIIGDYERAMAAKQAIEMLAEGR 161 (191)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTTC
T ss_pred EEEeChHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999653
No 31
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.2e-14 Score=111.01 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=61.9
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|++. ++++.|+|+|++++|+.|+.+|.+++..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999753 2357899999999999999999997654
No 32
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=8.6e-14 Score=109.64 Aligned_cols=74 Identities=30% Similarity=0.446 Sum_probs=65.4
Q ss_pred CccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 138 ~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
...++++|+||.+++|+||||+|++|++|+++|||+|+|.+. +..+.++.|+|+|++++|.+|+.+|.+++.++
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999999999999764 12367999999999999999999999999875
No 33
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.44 E-value=1.1e-13 Score=107.44 Aligned_cols=72 Identities=31% Similarity=0.499 Sum_probs=64.0
Q ss_pred EEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCC-CCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH-LPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 141 ~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
.+++|+||.+.+|+||||+|++|++|+++|||+|.|.++.+ .| .+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---GTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST---TCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999987632 23 36789999999999999999999998764
No 34
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.44 E-value=1.6e-13 Score=108.04 Aligned_cols=72 Identities=32% Similarity=0.542 Sum_probs=65.3
Q ss_pred ccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 139 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
..++++|+||.+++|+||||+|++|++|+++|||+|+|.+. .| .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999999999754 23 36789999999999999999999999976
No 35
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.44 E-value=8.2e-14 Score=108.13 Aligned_cols=73 Identities=32% Similarity=0.495 Sum_probs=65.8
Q ss_pred ccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 139 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
..++++|+||.+++|+||||+|++|++|+++|||+|.|.+. .| .+.++.|+|+|++++|.+|+.+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--VE---GSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT---TCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--CC---CCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 45789999999999999999999999999999999999763 22 467999999999999999999999998763
No 36
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.43 E-value=1.1e-13 Score=111.79 Aligned_cols=75 Identities=19% Similarity=0.339 Sum_probs=66.0
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+....+ ..++|.|+|+|++++|+.|+.+|.++|++.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999997643211 347899999999999999999999999763
No 37
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.41 E-value=4.2e-13 Score=110.60 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=66.8
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhchh
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTF 424 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 424 (502)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... + ..++++.|+|+|++++|+.|+.+|.++|++...
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~~ 89 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSEDEE 89 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhChH
Confidence 5678999999999999999999999999999999999976432 1 124689999999999999999999999977543
No 38
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-13 Score=105.74 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=65.8
Q ss_pred CccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 138 ~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
....+.+|+||.+.+|+||||+|++|++|+++|||+|.|.++...+ .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3457889999999999999999999999999999999998763222 36789999999999999999999998854
No 39
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.39 E-value=2.4e-13 Score=108.71 Aligned_cols=74 Identities=31% Similarity=0.504 Sum_probs=66.6
Q ss_pred CCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 137 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
....++++|+||.+.++.||||+|++|++|+++|||+|+|.+. .| .+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999999753 23 36789999999999999999999999987
No 40
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.38 E-value=4.2e-13 Score=110.56 Aligned_cols=87 Identities=25% Similarity=0.382 Sum_probs=72.7
Q ss_pred CCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 137 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
...+++++|+||.+.+|+||||+|++|++|+++|||+|.|.+... .+ ...++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE--GT-LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC--CS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC--CC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 446688999999999999999999999999999999999987522 11 246899999999999999999999999887
Q ss_pred CCcccccccc
Q 010746 217 PSRSQHLLLS 226 (502)
Q Consensus 217 ~~~~~~~~~~ 226 (502)
+...+++..+
T Consensus 88 ~~~~~~~~~~ 97 (104)
T 1we8_A 88 EELRKRIAHS 97 (104)
T ss_dssp HHHHHHHHCC
T ss_pred hHHHHHhccC
Confidence 6655554443
No 41
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.38 E-value=4.5e-13 Score=107.79 Aligned_cols=74 Identities=24% Similarity=0.395 Sum_probs=66.7
Q ss_pred CccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 138 ~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
...++++|+||.+++|+||||+|++|++|+++|||+|+|.++. + ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999998752 2 256899999999999999999999999874
No 42
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=2.8e-13 Score=107.92 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=65.6
Q ss_pred EEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCC-CCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH-LPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 141 ~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
++++|+||.+.+|+||||+|++|++|+++|||+|.|.++.+ .| .+.++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~---g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---GTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBST---TSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999987632 33 367899999999999999999999999774
No 43
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.38 E-value=3.3e-13 Score=109.06 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=67.7
Q ss_pred CCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 137 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
....++++|+||.+++++||||+|++|++|+++|||+|.|.++.... ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34668999999999999999999999999999999999998763211 247899999999999999999999999773
No 44
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.8e-13 Score=107.35 Aligned_cols=70 Identities=24% Similarity=0.341 Sum_probs=63.5
Q ss_pred CccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 138 ~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
...++++|.||.+++|+||||+|++||+|+++|||+|+|.+. ..+++|+|+|++++|++|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999765 2368999999999999999999998765
No 45
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=7.1e-13 Score=109.68 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=64.7
Q ss_pred EEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 142 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
+++|+||.+++++||||+|++|++|+++|||+|+|.++. .| +....++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999998762 22 22356899999999999999999999999874
No 46
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=8.5e-13 Score=108.68 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=63.7
Q ss_pred EEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 141 ~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
.+++|+||.+++++||||+|++|++|+++|+|+|+|.+++ + .+.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999998652 1 256899999999999999999999999873
No 47
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.4e-12 Score=105.37 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=65.3
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhchh
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTF 424 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 424 (502)
..++.+|.||.++++.|||++|++|++|+++|||+|+|+++. ..+++.|+|+|++++|+.|+.+|.+++++...
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999996542 13467899999999999999999999887653
No 48
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.34 E-value=8.3e-13 Score=100.78 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=59.7
Q ss_pred eeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 010746 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRL 419 (502)
Q Consensus 346 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 419 (502)
..+.+|.||.+++|.|||++|++|++|+++|||+|+|+++. +.++.|+|+|++++|+.|+.+|.+.+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999996532 35679999999999999999998753
No 49
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=1.3e-12 Score=105.45 Aligned_cols=72 Identities=18% Similarity=0.320 Sum_probs=64.0
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhch
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 423 (502)
..++.+|.||.+++|.|||++|++|++|+++|||+|+|++.+ +.++.|+|+|++++|+.|+.+|.+++++..
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 468999999999999999999999999999999999996532 234689999999999999999999997743
No 50
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=3.3e-12 Score=103.57 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=63.8
Q ss_pred eeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 010746 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (502)
Q Consensus 346 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 421 (502)
.++..|.||.++++.|||++|++|++|+++|||+|+|++... | ...++.|+|+|++++|..|+.+|..++++
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999976432 2 23678999999999999999999998876
No 51
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=3.3e-12 Score=103.61 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=64.5
Q ss_pred ccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 139 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
..+++.|.||.++++.||||+|++|++|+++|||+|.|.++.. |. ..++.|+|+|..++|.+|+.+|..++.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~~---~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-GN---QPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-CS---SCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-CC---CCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999987631 21 3678999999999999999999998866
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.27 E-value=3e-12 Score=97.69 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=60.0
Q ss_pred cEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHH
Q 010746 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRL 213 (502)
Q Consensus 140 ~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l 213 (502)
..+..|.||.++++.|||++|++|++|+++|||+|.|+++. ..++.|+|+|+.++|.+|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999997652 35689999999999999999998753
No 53
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=4.9e-12 Score=102.08 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=64.9
Q ss_pred CCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010746 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (502)
Q Consensus 137 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (502)
....++.+|.||.+.++.|||++|.+|++|+++|||+|.|.+.+ ..++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 34568999999999999999999999999999999999997642 23578999999999999999999998773
No 54
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=6e-12 Score=101.57 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=65.0
Q ss_pred CCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 137 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
....++..|.||..+++.|||++|++|++|+++|||+|+|..+.. ..++.|+|+|.+++|.+|+.+|..++.+
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999976521 2467899999999999999999998876
No 55
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=6.2e-12 Score=103.25 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=63.1
Q ss_pred eeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhch
Q 010746 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (502)
Q Consensus 346 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 423 (502)
..+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. +..+.|+|+|++++|+.|+.+|.+++++..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 57899999999999999999999999999999999997542 234589999999999999999999988744
No 56
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=3.6e-11 Score=98.65 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=62.6
Q ss_pred ccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 139 ~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
.+++..|.||.+.++.|||++|++|++|+++|||+|.|.++. ...+.|+|+|+.++|.+|+.+|..++.+
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 357899999999999999999999999999999999997652 2345899999999999999999998876
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=5.5e-11 Score=95.71 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=63.3
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHh-CCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSAT-RASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
..++..|.||.++++.|||++|.+|++|+++| ||+|.|+.. ++..+.|+|.|+.++|+.|+.+|.+++++.
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999999 999999653 234568999999999999999999998763
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=1.8e-10 Score=93.97 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=60.5
Q ss_pred eeEEEEEecCCceeeeeCCCchhHHHHHHH-hCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhch
Q 010746 346 VITTRILVPSAQIGCLIGRGGAIISEMRSA-TRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (502)
Q Consensus 346 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~-tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 423 (502)
.++.+|.||+.+|++|||++|++|++|+++ ++++|++++ .++.|+|+|+++.|.+|..+|...+++..
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 589999864 23589999999999999999999997743
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=1.1e-10 Score=93.90 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=64.8
Q ss_pred CCCccEEEEEEeeCCceeeeecCCChHHHHHHhhc-CceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHh
Q 010746 136 GELTLITVRMLVPADQIGCVIGKGGQVIQNIRTET-RAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLH 214 (502)
Q Consensus 136 ~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~ 214 (502)
+..+.++..|.||.++++.|||++|.+|++|+++| ||+|.|+.+. +..+.|+|.|+..+|.+|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-------SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-------TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 34567789999999999999999999999999999 9999997652 345689999999999999999999987
Q ss_pred c
Q 010746 215 E 215 (502)
Q Consensus 215 ~ 215 (502)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=2.4e-10 Score=93.29 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=59.4
Q ss_pred EEEEEEeeCCceeeeecCCChHHHHHHhh-cCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTE-TRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 141 ~~~~llVp~~~vg~IIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
++.+|.||..+|++|||++|++|++|+++ ++++|.|+.. ++.|+|+|+++.|.+|+.+|..++.+
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----------~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----------EDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS----------SCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC----------CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999997 5999998642 46899999999999999999998876
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.84 E-value=1.6e-09 Score=85.46 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=57.8
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCe-EEEecCCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHh
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRAS-IRILTNENVPKVAYEDEEMVQITG-SLDVASSALSQVTLRLRA 421 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~-I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l~~ 421 (502)
..+...|.||.+++|.|||++|++|++|+++|||+ |.|.. ++..|+|.| +.+++++|+.+|...-+.
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 45788999999999999999999999999999998 99952 236899999 899999998887654433
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.73 E-value=9.2e-09 Score=81.11 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=57.1
Q ss_pred CCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCce-EEEeecCCCCcccCCCCceEEEec-CHHHHHHHHHHHHH
Q 010746 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQ-IRILKDEHLPLCALSFDELLQVAG-EPAVVRKALVQIAS 211 (502)
Q Consensus 137 ~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~er~v~I~G-~~~~V~~A~~~I~~ 211 (502)
....+...|.||.+.++.|||++|.+|++|+++|||+ |.|..+ +..|+|.| +.+++.+|+.+|..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed----------dG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----------TGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT----------TTEEEEEESSHHHHHHHHHHHSC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC----------CCEEEEEECCHHHHHHHHHHHHh
Confidence 4456789999999999999999999999999999998 999533 46899999 89999999987754
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.61 E-value=1.1e-07 Score=80.83 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=61.7
Q ss_pred eeEEEEEecCC------ceeeeeCCCchhHHHHHHHhCCeEEEecCCCC-----------CCCCCCCceEEEEEc-CHHH
Q 010746 346 VITTRILVPSA------QIGCLIGRGGAIISEMRSATRASIRILTNENV-----------PKVAYEDEEMVQITG-SLDV 407 (502)
Q Consensus 346 ~~~~~i~VP~~------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~-----------P~~~~~~~r~v~I~G-~~~~ 407 (502)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... +.....++-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 47889999988 88999999999999999999999999764210 111123456788999 7899
Q ss_pred HHHHHHHHHHHHHh
Q 010746 408 ASSALSQVTLRLRA 421 (502)
Q Consensus 408 v~~A~~~I~~~l~~ 421 (502)
++.|+.+|..+|..
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999966
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=1.8e-07 Score=77.96 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=58.2
Q ss_pred eeEEEEEecCC-------ceeeeeCCCchhHHHHHHHhCCeEEEecCCC-----CCCCCCCCceEEEEEc-CHHHHHHHH
Q 010746 346 VITTRILVPSA-------QIGCLIGRGGAIISEMRSATRASIRILTNEN-----VPKVAYEDEEMVQITG-SLDVASSAL 412 (502)
Q Consensus 346 ~~~~~i~VP~~-------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~-----~P~~~~~~~r~v~I~G-~~~~v~~A~ 412 (502)
..+.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.. .......++-.|.|.+ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46778888754 7899999999999999999999999964421 0001112344677776 799999999
Q ss_pred HHHHHHHHh
Q 010746 413 SQVTLRLRA 421 (502)
Q Consensus 413 ~~I~~~l~~ 421 (502)
.+|.++|..
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999876
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=2.9e-07 Score=78.33 Aligned_cols=77 Identities=27% Similarity=0.352 Sum_probs=61.2
Q ss_pred ccEEEEEEeeCC------ceeeeecCCChHHHHHHhhcCceEEEeecCCCC-----------cccCCCCceEEEec-CHH
Q 010746 139 TLITVRMLVPAD------QIGCVIGKGGQVIQNIRTETRAQIRILKDEHLP-----------LCALSFDELLQVAG-EPA 200 (502)
Q Consensus 139 ~~~~~~llVp~~------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p-----------~~~~~~er~v~I~G-~~~ 200 (502)
..++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|....... ......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999988 788999999999999999999999997642100 00012355688899 688
Q ss_pred HHHHHHHHHHHHHhc
Q 010746 201 VVRKALVQIASRLHE 215 (502)
Q Consensus 201 ~V~~A~~~I~~~l~~ 215 (502)
++.+|+.+|..+|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=4.9e-07 Score=75.33 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=58.1
Q ss_pred ccEEEEEEeeCC-------ceeeeecCCChHHHHHHhhcCceEEEeecCCC---C--cccCCCCceEEEec-CHHHHHHH
Q 010746 139 TLITVRMLVPAD-------QIGCVIGKGGQVIQNIRTETRAQIRILKDEHL---P--LCALSFDELLQVAG-EPAVVRKA 205 (502)
Q Consensus 139 ~~~~~~llVp~~-------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~---p--~~~~~~er~v~I~G-~~~~V~~A 205 (502)
..++.+|.||-+ .++.|||++|.+||+|+++|||+|.|..+... + ......+-.|.|.+ +.+++.+|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 457888998865 67999999999999999999999999743110 0 00011233577775 69999999
Q ss_pred HHHHHHHHhc
Q 010746 206 LVQIASRLHE 215 (502)
Q Consensus 206 ~~~I~~~l~~ 215 (502)
+.+|.++|.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999876
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.13 E-value=1.9e-06 Score=73.57 Aligned_cols=76 Identities=18% Similarity=0.352 Sum_probs=56.5
Q ss_pred EEEEEEeeCCc------eeeeecCCChHHHHHHhhcCceEEEeecCCC------------Cccc-CCCCceEEEecC-HH
Q 010746 141 ITVRMLVPADQ------IGCVIGKGGQVIQNIRTETRAQIRILKDEHL------------PLCA-LSFDELLQVAGE-PA 200 (502)
Q Consensus 141 ~~~~llVp~~~------vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~------------p~~~-~~~er~v~I~G~-~~ 200 (502)
++.+|.||.+. +|.|||++|.++|+|+++|||+|.|..+... |... ...+--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 57789999655 8999999999999999999999999865211 1100 112235778884 32
Q ss_pred -----HHHHHHHHHHHHHhcC
Q 010746 201 -----VVRKALVQIASRLHEN 216 (502)
Q Consensus 201 -----~V~~A~~~I~~~l~~~ 216 (502)
.+.+|+.+|..+|...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 7899999999988753
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.05 E-value=4.1e-06 Score=71.54 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=54.3
Q ss_pred eEEEEEecCC------ceeeeeCCCchhHHHHHHHhCCeEEEecCCCC------------CC-CCCCCceEEEEEcC-HH
Q 010746 347 ITTRILVPSA------QIGCLIGRGGAIISEMRSATRASIRILTNENV------------PK-VAYEDEEMVQITGS-LD 406 (502)
Q Consensus 347 ~~~~i~VP~~------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~------------P~-~~~~~~r~v~I~G~-~~ 406 (502)
++.+|.||.+ ++|.|||++|.++|+|+++|||+|.|-.+... |. ...+++--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4667888854 49999999999999999999999999765311 00 00122236778883 43
Q ss_pred -----HHHHHHHHHHHHHH
Q 010746 407 -----VASSALSQVTLRLR 420 (502)
Q Consensus 407 -----~v~~A~~~I~~~l~ 420 (502)
.++.|+.+|..+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78899999988885
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.03 E-value=3.2e-06 Score=90.32 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=72.1
Q ss_pred cCCCHHHHHHHHHHHHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccC
Q 010746 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187 (502)
Q Consensus 108 ~~~~~a~~al~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 187 (502)
+.+..|.++...+++.+.+.......+.....+....|.||.+.++.|||++|.+||.|+++|||+|.|..
T Consensus 534 ~aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------- 604 (630)
T 3u1k_A 534 EAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD--------- 604 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------
Confidence 34556777788887766554433333333445668889999999999999999999999999999999953
Q ss_pred CCCceEEEecC-HHHHHHHHHHHHHHH
Q 010746 188 SFDELLQVAGE-PAVVRKALVQIASRL 213 (502)
Q Consensus 188 ~~er~v~I~G~-~~~V~~A~~~I~~~l 213 (502)
+-.|.|.+. .+++.+|+.+|..++
T Consensus 605 --~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 605 --EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp --SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred --CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 347999996 688999998887654
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.83 E-value=3.7e-05 Score=64.19 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=59.9
Q ss_pred EEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 348 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
...+.|...+++.|||++|+.|++|+..|++.|+|..-+ .+....|+|.|++..-..|+.+|.....-+
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999997542 245678999999999999999998777554
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.62 E-value=2.3e-05 Score=83.75 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=54.9
Q ss_pred CceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 010746 344 DPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGS-LDVASSALSQVTLRL 419 (502)
Q Consensus 344 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l 419 (502)
.......|.||.+.++.|||+||++||+|+++|||+|.|.. +..|.|.++ .+++++|+.+|.+.+
T Consensus 564 ~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 564 NGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD-----------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp TCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred cCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999942 348999995 788999999887654
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.52 E-value=1.1e-05 Score=69.45 Aligned_cols=109 Identities=24% Similarity=0.310 Sum_probs=74.1
Q ss_pred CCCceEEEEEecCCceeeeecCChhHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHH
Q 010746 40 GSEDTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFR 119 (502)
Q Consensus 40 ~~~~~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~ 119 (502)
+++.-.+.++|+...+|..||++|+.|+.|++++|-+|.|-+-. .++ .+ .
T Consensus 32 d~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s-----------~d~----------------~~---f 81 (144)
T 2cxc_A 32 DEENNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS-----------SDL----------------ER---I 81 (144)
T ss_dssp EGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC-----------SSH----------------HH---H
T ss_pred eCCCCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC-----------CCH----------------HH---H
Confidence 34446788999999999999999999999999999999874321 000 00 0
Q ss_pred HHHHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEee
Q 010746 120 VHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILK 178 (502)
Q Consensus 120 i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~ 178 (502)
+.+.+.......-.-...+....+.+.||..+.+..|||+|++++-..+-||.+|.|..
T Consensus 82 I~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 82 VKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp HHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred HHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 11111000000000000023457889999999999999999999999999999887743
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.50 E-value=4.7e-05 Score=82.22 Aligned_cols=97 Identities=24% Similarity=0.354 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHHHHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccC
Q 010746 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187 (502)
Q Consensus 108 ~~~~~a~~al~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 187 (502)
+.+..|.++...|++.+.........+-....+....|.||.+.++.|||++|.+||+|+++|||+|.|..+
T Consensus 537 ~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd-------- 608 (726)
T 4aid_A 537 QALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD-------- 608 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC--------
Confidence 345667778888887765443332222233345567899999999999999999999999999999998533
Q ss_pred CCCceEEEecC-HHHHHHHHHHHHHHHhc
Q 010746 188 SFDELLQVAGE-PAVVRKALVQIASRLHE 215 (502)
Q Consensus 188 ~~er~v~I~G~-~~~V~~A~~~I~~~l~~ 215 (502)
..|.|.+. .+++.+|+..|..++.+
T Consensus 609 ---G~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 609 ---GVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp --------CCSCHHHHHHHHHC-------
T ss_pred ---ceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 35777775 88899999999887754
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.31 E-value=6.6e-05 Score=64.48 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=74.0
Q ss_pred ceEEEeccCCccccccccCcccccchhhhcCCeEEecCCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccC
Q 010746 262 FSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERE 341 (502)
Q Consensus 262 ~~~~i~vp~~~~g~IIGk~G~~Ik~i~~~sga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (502)
-.+.+.|+...+|..||++|++|+.|.++.|-+|.+-.-+.+ +..-+..++ .|.-...+...
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d----------------~~~fI~naL--sPA~V~~V~i~ 97 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD----------------LERIVKNLF--PGVKIESINVR 97 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS----------------HHHHHHHHS--TTSCEEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC----------------HHHHHHHhc--CCceEEEEEEe
Confidence 467788999999999999999999999999999888764321 111122222 11111111110
Q ss_pred CCCceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEe
Q 010746 342 SGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRIL 383 (502)
Q Consensus 342 ~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~ 383 (502)
..+......+.||.++.+..|||+|.+++-..+.||.+|.|.
T Consensus 98 ~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 98 ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 002345678899999999999999999999999999988774
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.23 E-value=0.00053 Score=57.27 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=59.2
Q ss_pred EEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 142 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
.+.|.|.+..++.|+|++|+.|+.|+..|++.|++..-+. +..--|+|.|.+..-.+|+.+|..+...
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999986521 2355699999999999999999887754
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.85 E-value=0.00034 Score=75.56 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=12.7
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHhch
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG-SLDVASSALSQVTLRLRANT 423 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l~~~~ 423 (502)
......+.||.+.++.|||+||.+||+|+++||++|.|.. +..|.|.+ +.++++.|+.+|...+.+..
T Consensus 568 ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d-----------dG~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 568 APKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND-----------DGVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp CCC------------------------------------------------------CCSCHHHHHHHHHC---------
T ss_pred CCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----------CceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 3456789999999999999999999999999999999842 34677877 58899999999988876643
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.62 E-value=0.0093 Score=55.67 Aligned_cols=97 Identities=23% Similarity=0.227 Sum_probs=63.4
Q ss_pred CceeeeecCChhHHHHH-HHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHHHHHhhhcccC
Q 010746 53 RKIGSIIGKGGEIVKQL-RSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLA 131 (502)
Q Consensus 53 ~~~g~iIGk~G~~I~~I-~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~~~i~~~~~~~ 131 (502)
+-+|..||++|++|+.| ++-.|=+|.|-.-. ++ .. ..+...+.......
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s--------------~d-------------p~---~fi~nalsPA~V~~ 175 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD--------------DD-------------PA---RFVANALSPAKVVS 175 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC--------------SS-------------HH---HHHHHHTTTSCCSE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEec--------------CC-------------HH---HHHHhccCCcceEE
Confidence 46899999999999999 55567788763221 00 00 11111111100000
Q ss_pred CCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecC
Q 010746 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180 (502)
Q Consensus 132 ~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~ 180 (502)
-.- .....-.+.+.||..+.+..|||+|++++.-..-||.+|.|....
T Consensus 176 V~i-~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 176 VSV-IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEE-EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEE-EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 000 000113688999999999999999999999999999999998763
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.57 E-value=0.0094 Score=55.65 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=65.8
Q ss_pred CccccccccCcccccch-hhhcCCeEEecCCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccc-cCCCCceeE
Q 010746 271 GNIGGVIGKGGGIIKQI-RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTE-RESGDPVIT 348 (502)
Q Consensus 271 ~~~g~IIGk~G~~Ik~i-~~~sga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 348 (502)
+-+|..||++|++|+.| ++-.|-+|.+-.-+.+ +..-+..+ +.+.-...+. .+. ....
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d----------------p~~fi~na--lsPA~V~~V~i~~~--~~~~ 185 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD----------------PARFVANA--LSPAKVVSVSVIDQ--TARA 185 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS----------------HHHHHHHH--TTTSCCSEEEEEET--TTTE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC----------------HHHHHHhc--cCCcceEEEEEEcC--CCcE
Confidence 45799999999999999 6666777777653321 11112222 2121111111 011 1246
Q ss_pred EEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCC
Q 010746 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNEN 387 (502)
Q Consensus 349 ~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~ 387 (502)
..+.||.++.+.-|||+|.+|+--.+.||.+|.|....+
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 789999999999999999999999999999999976543
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.55 E-value=0.0048 Score=60.95 Aligned_cols=97 Identities=25% Similarity=0.241 Sum_probs=65.1
Q ss_pred CceeeeecCChhHHHHHHHhh-CCeEEecCCCCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHHHHHhhhcccC
Q 010746 53 RKIGSIIGKGGEIVKQLRSET-KSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLA 131 (502)
Q Consensus 53 ~~~g~iIGk~G~~I~~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~~~i~~~~~~~ 131 (502)
+-+|..||++|++|+.|.++. |=+|.|-+-. ++ .. ..+...+.......
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s--------------~d-------------p~---~fi~nalsPA~V~~ 298 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD--------------DD-------------PA---RFVANALSPAKVVS 298 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC--------------SS-------------HH---HHHHHHTTTSCCSE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC--------------CC-------------HH---HHHHHhcCCcceeE
Confidence 568999999999999999999 8788764321 00 00 11111111100000
Q ss_pred CCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecC
Q 010746 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180 (502)
Q Consensus 132 ~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~ 180 (502)
-.. .....-.+.+.||..+.+..|||+|++++-...-||.+|.|..+.
T Consensus 299 V~~-~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 299 VSV-IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEE-EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEE-EcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 000 001123688999999999999999999999999999999998773
No 80
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.31 E-value=0.0041 Score=67.51 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=13.2
Q ss_pred cCCCHHHHHHHHHHHHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccC
Q 010746 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187 (502)
Q Consensus 108 ~~~~~a~~al~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 187 (502)
+.+..|.++...+++.+.........+-....+....+.||.+.++.+||++|.+|+.|.++||+.|.|..+
T Consensus 527 ~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d-------- 598 (723)
T 3cdi_A 527 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD-------- 598 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecCC--------
Confidence 345557777777777665433222222223345567789999999999999999999999999999988533
Q ss_pred CCCceEEEecC-HHHHHHHHHHHHHHHh
Q 010746 188 SFDELLQVAGE-PAVVRKALVQIASRLH 214 (502)
Q Consensus 188 ~~er~v~I~G~-~~~V~~A~~~I~~~l~ 214 (502)
..|.|.+. .+.+.+|...|..++.
T Consensus 599 ---g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 599 ---GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------
T ss_pred ---ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 35666664 5667778777766553
No 81
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.23 E-value=0.012 Score=58.03 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=66.4
Q ss_pred CccccccccCcccccchhhhc-CCeEEecCCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCcccccc-ccCCCCceeE
Q 010746 271 GNIGGVIGKGGGIIKQIRQES-GASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKT-ERESGDPVIT 348 (502)
Q Consensus 271 ~~~g~IIGk~G~~Ik~i~~~s-ga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 348 (502)
+-+|..||++|.+|+.|.++. |-+|.+-.-+.+ +..-+..+ +.+.-...+ ..+. ....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d----------------p~~fi~na--lsPA~V~~V~~~~~--~~~~ 308 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD----------------PARFVANA--LSPAKVVSVSVIDQ--TARA 308 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS----------------HHHHHHHH--TTTSCCSEEEEEET--TTTE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC----------------HHHHHHHh--cCCcceeEEEEEcC--CCcE
Confidence 457999999999999999998 777777653311 11112222 212111111 0011 1346
Q ss_pred EEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCC
Q 010746 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNE 386 (502)
Q Consensus 349 ~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~ 386 (502)
..+.||.++.+..|||+|.+++-..+.||.+|.|....
T Consensus 309 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 309 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 78999999999999999999999999999999997654
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.94 E-value=0.0022 Score=69.82 Aligned_cols=94 Identities=24% Similarity=0.335 Sum_probs=37.1
Q ss_pred cCCCHHHHHHHHHHHHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccC
Q 010746 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187 (502)
Q Consensus 108 ~~~~~a~~al~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 187 (502)
+.+..|.++...|++.+....... .+.....+....|.||.+.++.+||++|.+|+.|+++||+.|.|..+
T Consensus 566 ~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~d-------- 636 (757)
T 1e3p_A 566 AALKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDD-------- 636 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecCC--------
Confidence 445667777777777665433222 22222334445688999999999999999999999999999988533
Q ss_pred CCCceEEEec-CHHHHHHHHHHHHHHH
Q 010746 188 SFDELLQVAG-EPAVVRKALVQIASRL 213 (502)
Q Consensus 188 ~~er~v~I~G-~~~~V~~A~~~I~~~l 213 (502)
..|.|+. +.+...+|...|..+.
T Consensus 637 ---G~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 637 ---GTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ------CCCBSSHHHHCC---------
T ss_pred ---ceEEEecCCHHHHHHHHHHHHHhc
Confidence 3466665 3566667766665543
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.72 E-value=0.04 Score=54.14 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=63.5
Q ss_pred CceeeeecCChhHHHHHHHhh-CCeEEecCCCCCCCccEEEEEcCCCCcccccCCccCCCHHHHHHHHHHHHHhhhcccC
Q 010746 53 RKIGSIIGKGGEIVKQLRSET-KSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLA 131 (502)
Q Consensus 53 ~~~g~iIGk~G~~I~~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~~~i~~~~~~~ 131 (502)
+-+|..||.+|+.|+.|.++. |-+|.|-.- . ++ .. ..+...+.......
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~------------s--~d-------------~~---~fi~nal~Pa~v~~ 294 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW------------S--DD-------------PK---QLIANALAPATVIE 294 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC------------C--SS-------------HH---HHHHHHTCSSCCSE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec------------C--CC-------------HH---HHHHHhcCccEEEE
Confidence 468999999999999999998 667765321 1 00 00 11111110000000
Q ss_pred CCcCCCCccEEEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeec
Q 010746 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKD 179 (502)
Q Consensus 132 ~~~~~~~~~~~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~ 179 (502)
-. -..+..-.+.+.||..+.+..|||+|++++.-..-||.+|.|..+
T Consensus 295 v~-~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 295 VE-ILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EE-EEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EE-EEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 00 000112368899999999999999999999999999999999765
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.48 E-value=0.078 Score=52.11 Aligned_cols=96 Identities=30% Similarity=0.389 Sum_probs=64.5
Q ss_pred CccccccccCcccccchhhhc-CCeEEecCCCCCCCCeEEEecCCCccCCCchhHHHHHhhCCccccccccCCCCceeEE
Q 010746 271 GNIGGVIGKGGGIIKQIRQES-GASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITT 349 (502)
Q Consensus 271 ~~~g~IIGk~G~~Ik~i~~~s-ga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 349 (502)
+-+|+.||.+|.+|+.+.++. |-+|.+-.-+.+ +..-+..+ +.+.-...+... .......
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d----------------~~~fi~na--l~Pa~v~~v~~~-d~~~~~~ 305 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD----------------PKQLIANA--LAPATVIEVEIL-DKENKAA 305 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS----------------HHHHHHHH--TCSSCCSEEEEE-ETTTTEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC----------------HHHHHHHh--cCccEEEEEEEE-cCCCCEE
Confidence 357999999999999999888 566666542211 11112222 212111111110 0113467
Q ss_pred EEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecC
Q 010746 350 RILVPSAQIGCLIGRGGAIISEMRSATRASIRILTN 385 (502)
Q Consensus 350 ~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~ 385 (502)
.+.||.++.+.-|||+|.+++--.+.||.+|.|...
T Consensus 306 ~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 306 RVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 899999999999999999999999999999999653
No 85
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.13 E-value=0.016 Score=62.77 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred ceeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHh
Q 010746 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG-SLDVASSALSQVTLRLRA 421 (502)
Q Consensus 345 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l~~ 421 (502)
......+.||.+.++.|||++|.+|+.|.++||+.|.|.. +..|.|.+ ..+.++.|..+|...+.+
T Consensus 558 ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 558 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 3456788999999999999999999999999999998842 34666766 456777787777666544
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.11 E-value=0.016 Score=63.19 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=21.9
Q ss_pred eeEEEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q 010746 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG-SLDVASSALSQVTLRL 419 (502)
Q Consensus 346 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l 419 (502)
.....|.||.+.++.|||++|.+||+|++.||+.|.|.. +..|.|.. ..+..+.|+.+|....
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CBCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 445678899999999999999999999999999999842 34677777 4566677766665544
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=73.41 E-value=1.2 Score=38.29 Aligned_cols=30 Identities=20% Similarity=-0.006 Sum_probs=25.2
Q ss_pred EEEEEecCCceeeeecCChhHHHHHHHhhC
Q 010746 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSETK 74 (502)
Q Consensus 45 ~~~i~vp~~~~g~iIGk~G~~I~~I~~~tg 74 (502)
++.+.+-.+..|.||||.|.|+++|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 455666788999999999999999987763
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=64.24 E-value=2.2 Score=36.62 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=41.2
Q ss_pred EEEEEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 142 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
++.+.+..+..|.||||.|++++.||--+..- +.+.. ...=.+-|.+-.+.-++.+..++..+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~--vn~~~-------~~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNW--IHPTY-------GYSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH--HHHHH-------SCEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHH--hhhcC-------CceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 56677788999999999999999998443211 11100 0001234556667777777777766655
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=61.93 E-value=2.5 Score=32.99 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=24.1
Q ss_pred EEEEEecCCceeeeecCChhHHHHHHHhh
Q 010746 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (502)
Q Consensus 45 ~~~i~vp~~~~g~iIGk~G~~I~~I~~~t 73 (502)
..++.|....-|.|||++|+.|.+|+.+.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 46777778889999999999999987654
No 90
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=55.95 E-value=26 Score=24.76 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.5
Q ss_pred CceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 010746 395 DEEMVQITGSLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 395 ~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 422 (502)
++-.+.|+|.|++|.+-+..-.++|...
T Consensus 40 ndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 40 NDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 4557999999999999888888888764
No 91
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=52.15 E-value=4.2 Score=31.63 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=22.9
Q ss_pred EEEEEeeCCceeeeecCCChHHHHHHhh
Q 010746 142 TVRMLVPADQIGCVIGKGGQVIQNIRTE 169 (502)
Q Consensus 142 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~ 169 (502)
.+++.|....-|.|||++|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4667777888899999999999887754
No 92
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=46.29 E-value=46 Score=26.64 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=33.8
Q ss_pred hHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhch
Q 010746 368 IISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (502)
Q Consensus 368 ~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 423 (502)
.|++-++-.|+--.... .++-.+.|+|-|+||.+-+..-.++|...+
T Consensus 104 mirqarkfagtvtytl~---------gn~l~i~itgvpeqvrkelakeaerl~~ef 150 (170)
T 4hhu_A 104 MIRQARKFAGTVTYTLS---------GNRLVIVITGVPEQVRKELAKEAERLKAEF 150 (170)
T ss_dssp HHHHHHHTTCEEEEEEC---------SSEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEEe---------CCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 36777777775332221 244578999999999999888889988754
No 93
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=40.98 E-value=1.4e+02 Score=23.89 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCCcccccCCccCCCHHHHHHHHHHHHHhhhcccCCCcCCCCccEEEEEEeeCCceeeeecCCC-------
Q 010746 88 ERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGG------- 160 (502)
Q Consensus 88 ervv~I~G~~e~~~~~~~~~~~~~~a~~al~~i~~~i~~~~~~~~~~~~~~~~~~~~llVp~~~vg~IIGk~G------- 160 (502)
+-+|.|+|-+|.+ .+.+.+-.+++..+ -+-.++..++-..+-+-.|.=.+-
T Consensus 42 ~l~i~itgvpeqv-------------rkelakeaerl~~e---------fni~v~y~imgsgsgvm~i~f~gddlea~ek 99 (170)
T 4hhu_A 42 RLVIVITGVPEQV-------------RKELAKEAERLKAE---------FNINVQYQIMGSGSGVMVIVFEGDDLEALEK 99 (170)
T ss_dssp EEEEEEESCCHHH-------------HHHHHHHHHHHHHH---------HTCEEEEEEECTTCCEEEEEEECSCHHHHHH
T ss_pred EEEEEEeCCcHHH-------------HHHHHHHHHHHHHh---------cceEEEEEEEeCCceEEEEEEecCcHHHHHH
Confidence 5679999998874 34444444444322 123445555554444433332221
Q ss_pred ---hHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010746 161 ---QVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (502)
Q Consensus 161 ---~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I~~~l~~ 215 (502)
+.|++-+.-.|+ +...-+ .++-.+.|+|.|++|.+-+..=.+.|..
T Consensus 100 alkemirqarkfagt-vtytl~--------gn~l~i~itgvpeqvrkelakeaerl~~ 148 (170)
T 4hhu_A 100 ALKEMIRQARKFAGT-VTYTLS--------GNRLVIVITGVPEQVRKELAKEAERLKA 148 (170)
T ss_dssp HHHHHHHHHHHTTCE-EEEEEC--------SSEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcce-EEEEEe--------CCEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 233444444443 332222 3455789999999999987777777765
No 94
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=39.82 E-value=9.2 Score=34.97 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=27.1
Q ss_pred EEEEEecCCceeeeecCChhHHHHHHHhhCCeEE
Q 010746 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIR 78 (502)
Q Consensus 45 ~~~i~vp~~~~g~iIGk~G~~I~~I~~~tga~I~ 78 (502)
.+.+.|..+..|.||||.|++++.|+.-+...+.
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 3455566778999999999999999988865443
No 95
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=36.82 E-value=3.6 Score=37.65 Aligned_cols=69 Identities=9% Similarity=0.144 Sum_probs=45.1
Q ss_pred EEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhchh
Q 010746 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTF 424 (502)
Q Consensus 349 ~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 424 (502)
..|.|..+..|.+||+.|.+++.||-.+..-++ .... ....-++-|-|=.+.-+..+..+...+.+...
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn--~~~~-----~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~ 162 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN--KSSS-----DYIRVKLDTENYRERRKETLETLAKNIAYKVK 162 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH--HTCS-----SCCEEEEESTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHH--hcCC-----CceEEEEecchHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778999999999999999988864332 2110 01123456666666666677777777766543
No 96
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=31.49 E-value=74 Score=28.93 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=39.9
Q ss_pred EEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHH
Q 010746 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVAS 409 (502)
Q Consensus 349 ~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G~~~~v~ 409 (502)
.-+.++...+..++|+++..++.|.+.+++.|-+-. +-.|=|.++.....
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~ 187 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVS 187 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHH
Confidence 456899999999999999999999999999998832 22566888776333
No 97
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=30.35 E-value=77 Score=24.82 Aligned_cols=51 Identities=8% Similarity=0.015 Sum_probs=35.6
Q ss_pred ChHHHHHHhhcCceEEEeecCC--CCcccCCCCceEEEecCHHHHHHHHHHHHH
Q 010746 160 GQVIQNIRTETRAQIRILKDEH--LPLCALSFDELLQVAGEPAVVRKALVQIAS 211 (502)
Q Consensus 160 G~~Ik~I~~~tga~I~i~~~~~--~p~~~~~~er~v~I~G~~~~V~~A~~~I~~ 211 (502)
.-.|.+|..++++.++|....- +-... -..-+|.+.|+.+++.+|+..+.+
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~~-~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGVK-FGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTEE-EEEEEEEEESCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCee-EEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4578999999999999976521 00000 112368899999999999877754
No 98
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.98 E-value=15 Score=33.06 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.8
Q ss_pred EEEEecCCceeeeecCChhHHHHHHHhh
Q 010746 46 YRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (502)
Q Consensus 46 ~~i~vp~~~~g~iIGk~G~~I~~I~~~t 73 (502)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4566667788999999999999987654
No 99
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=27.53 E-value=15 Score=33.69 Aligned_cols=30 Identities=10% Similarity=0.240 Sum_probs=24.6
Q ss_pred EEEEEecCCceeeeecCChhHHHHHHHhhC
Q 010746 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSETK 74 (502)
Q Consensus 45 ~~~i~vp~~~~g~iIGk~G~~I~~I~~~tg 74 (502)
..++.|....-|.|||++|+.|++|+.+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~ 74 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLVQ 74 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 356777778899999999999999876653
No 100
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.49 E-value=70 Score=29.08 Aligned_cols=54 Identities=28% Similarity=0.382 Sum_probs=40.7
Q ss_pred EEeeCCceeeeecCCChHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHH
Q 010746 145 MLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQI 209 (502)
Q Consensus 145 llVp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~er~v~I~G~~~~V~~A~~~I 209 (502)
+-++...+.+++|+++..++.|.+.+++.|-+-.. -.|=|.+.......+...|
T Consensus 140 ~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N-----------G~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 140 VAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN-----------GLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT-----------SEEEEESCHHHHHHHHHHH
T ss_pred EEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC-----------cEEEEeCCchhHHHHHHHH
Confidence 56778888899999999999999999999988332 2477888776444444444
No 101
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=27.17 E-value=20 Score=33.09 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=25.2
Q ss_pred eEEEEEecCCceeeeecCChhHHHHHHHhh
Q 010746 44 TVYRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (502)
Q Consensus 44 ~~~~i~vp~~~~g~iIGk~G~~I~~I~~~t 73 (502)
...++.|....-|.|||++|+.|++|+.+.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 346777788889999999999999988764
No 102
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.31 E-value=24 Score=33.68 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.5
Q ss_pred CceeEEEEEecCC-ceeeeeCCCchhHHHHHH--------HhCCeEEE
Q 010746 344 DPVITTRILVPSA-QIGCLIGRGGAIISEMRS--------ATRASIRI 382 (502)
Q Consensus 344 ~~~~~~~i~VP~~-~vg~IIGk~G~~Ik~I~~--------~tGa~I~i 382 (502)
...+...+.|..+ +-+-|||++|++||+|.. ..|++|.+
T Consensus 237 ~~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 237 MLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp SEEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred eEEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 3457788888854 668999999999996644 45777666
No 103
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=25.13 E-value=23 Score=32.58 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=22.7
Q ss_pred EEEEEecCCceeeeeCCCchhHHHHHHH
Q 010746 348 TTRILVPSAQIGCLIGRGGAIISEMRSA 375 (502)
Q Consensus 348 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 375 (502)
.+++.|....-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3567777788899999999999987644
No 104
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=24.88 E-value=1e+02 Score=28.00 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=40.2
Q ss_pred EEEEecCCceeeeeCCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEc-CHHHHHHH
Q 010746 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG-SLDVASSA 411 (502)
Q Consensus 349 ~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~~r~v~I~G-~~~~v~~A 411 (502)
.-+.|+...+..++|+++..++.|.+.++++|-+-. +..|-|.+ ++.....+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~~~ 202 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEAIA 202 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHHHH
Confidence 456899999999999999999999999999998842 23677886 44444433
No 105
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.73 E-value=16 Score=33.38 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=25.2
Q ss_pred EEEEEecCCceeeeecCChhHHHHHHHhhC
Q 010746 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSETK 74 (502)
Q Consensus 45 ~~~i~vp~~~~g~iIGk~G~~I~~I~~~tg 74 (502)
..++.|....-|.|||++|+.|++|+.+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 467778888899999999999999877643
No 106
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=24.42 E-value=23 Score=33.78 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=27.7
Q ss_pred ccEEEEEEeeCC-ceeeeecCCChHHHHHHh--------hcCceEEE
Q 010746 139 TLITVRMLVPAD-QIGCVIGKGGQVIQNIRT--------ETRAQIRI 176 (502)
Q Consensus 139 ~~~~~~llVp~~-~vg~IIGk~G~~Ik~I~~--------~tga~I~i 176 (502)
..+...++|..+ +.+.||||+|++||+|.. -++++|.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 346677777754 778899999999987754 35665554
No 107
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=24.22 E-value=1e+02 Score=24.14 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=36.2
Q ss_pred CchhHHHHHHHhCCeEEEecCCCCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 010746 365 GGAIISEMRSATRASIRILTNENVPK-VAYEDEEMVQITGSLDVASSALSQVTLR 418 (502)
Q Consensus 365 ~G~~Ik~I~~~tGa~I~i~~~~~~P~-~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 418 (502)
....|.+|.+++++.+.|....-..- ...-..-+|.+.|..+++++|+..+.+.
T Consensus 34 ~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 34 DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 34589999999999998875321000 0001123689999999999998877643
No 108
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=24.00 E-value=26 Score=34.41 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 010746 404 SLDVASSALSQVTLRLRAN 422 (502)
Q Consensus 404 ~~~~v~~A~~~I~~~l~~~ 422 (502)
+.+.+......|++.++..
T Consensus 230 t~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 230 TLELLDELTHEFLQILEKT 248 (358)
T ss_dssp CHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 6888888888888776554
No 109
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.68 E-value=25 Score=31.69 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=26.3
Q ss_pred EEEEeeCCceeeeecCCChHHHHHHh----hcC---ceEEEee
Q 010746 143 VRMLVPADQIGCVIGKGGQVIQNIRT----ETR---AQIRILK 178 (502)
Q Consensus 143 ~~llVp~~~vg~IIGk~G~~Ik~I~~----~tg---a~I~i~~ 178 (502)
+++.|....-|.|||++|+.|++|+. .++ +.|.+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~e 84 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVEE 84 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEEE
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEEE
Confidence 45667777789999999999988764 455 4555543
No 110
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=22.00 E-value=16 Score=32.85 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=21.8
Q ss_pred EEEEecCCceeeeecCChhHHHHHHHhh
Q 010746 46 YRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (502)
Q Consensus 46 ~~i~vp~~~~g~iIGk~G~~I~~I~~~t 73 (502)
.++.|....-|.|||++|+.|++|+.+.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l 90 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVV 90 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4455666678899999999999887653
No 111
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=21.98 E-value=32 Score=31.72 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.5
Q ss_pred EEEEEeeCCceeeeecCCChHHHHHHhh
Q 010746 142 TVRMLVPADQIGCVIGKGGQVIQNIRTE 169 (502)
Q Consensus 142 ~~~llVp~~~vg~IIGk~G~~Ik~I~~~ 169 (502)
.+++.|....-+.|||++|+.|++|+..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4677788888899999999999888754
No 112
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.84 E-value=18 Score=33.29 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=25.3
Q ss_pred eEEEEEecCCceeeeecCChhHHHHHHHhhC
Q 010746 44 TVYRYLCPLRKIGSIIGKGGEIVKQLRSETK 74 (502)
Q Consensus 44 ~~~~i~vp~~~~g~iIGk~G~~I~~I~~~tg 74 (502)
...++.|....-|.|||++|+.|++|+++..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 3466777778899999999999999987653
No 113
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=21.64 E-value=37 Score=32.70 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010746 405 LDVASSALSQVTLRLRAN 422 (502)
Q Consensus 405 ~~~v~~A~~~I~~~l~~~ 422 (502)
.+.+..|+..|.+++...
T Consensus 241 eeav~~A~kIL~~kl~~f 258 (318)
T 1twf_C 241 DQVVVRGIDTLQKKVASI 258 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 557888988888877663
No 114
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.60 E-value=23 Score=32.31 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=23.1
Q ss_pred EEEEEecCCceeeeeCCCchhHHHHHHH
Q 010746 348 TTRILVPSAQIGCLIGRGGAIISEMRSA 375 (502)
Q Consensus 348 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 375 (502)
.+++.|....-|.|||++|+.|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4667788888899999999999987543
No 115
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=20.45 E-value=18 Score=33.09 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=22.0
Q ss_pred EEEEecCCceeeeecCChhHHHHHHHhh
Q 010746 46 YRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (502)
Q Consensus 46 ~~i~vp~~~~g~iIGk~G~~I~~I~~~t 73 (502)
+++.|....-|.|||++|+.|++|+.+.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L 91 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVV 91 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4555666778899999999999887653
Done!