BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010747
         (502 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
           Aglycone
 pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
           Aglycone
 pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
           Thymidine Diphosphate
 pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
           Thymidine Diphosphate
          Length = 387

 Score = 33.9 bits (76), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 414 GREIWEQSRASFQEKGMDIHTKLMRKYKRVPESWFVIILLINIAATV 460
           GR++WEQ+ ++  +  +D     + +Y R+ E+W   +LL+++ A +
Sbjct: 84  GRQLWEQTASNVAQSSLD----QLPEYLRLAEAWRPSVLLVDVCALI 126


>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
 pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
          Length = 391

 Score = 33.9 bits (76), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 414 GREIWEQSRASFQEKGMDIHTKLMRKYKRVPESWFVIILLINIAATV 460
           GR++WEQ+ ++  +  +D     + +Y R+ E+W   +LL+++ A +
Sbjct: 84  GRQLWEQTASNVAQSSLD----QLPEYLRLAEAWRPSVLLVDVCALI 126


>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
           Chain Aminotransferase In Complex With
           Pyridoxal-5'-Phosphate At 1.9 Angstrom.
 pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
           Chain Aminotransferase In Complex With
           Pyridoxal-5'-Phosphate At 1.9 Angstrom
          Length = 373

 Score = 30.4 bits (67), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 130 KSTPLEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTV 170
            S PLEFT++       + V  +I AN G G  Y  H+V++
Sbjct: 7   NSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSI 47


>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
           Aminotransferase- Implications For Inhibitor Design
 pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
           Aminotransferase- Implications For Inhibitor Design
 pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
           Aminotransferase- Implications For Inhibitor Design
 pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
           Aminotransferase- Implications For Inhibitor Design
          Length = 372

 Score = 30.4 bits (67), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 130 KSTPLEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTV 170
            S PLEFT++       + V  +I AN G G  Y  H+V++
Sbjct: 6   NSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSI 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,055,500
Number of Sequences: 62578
Number of extensions: 486472
Number of successful extensions: 1306
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 5
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)