Query 010747
Match_columns 502
No_of_seqs 140 out of 716
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 2E-161 4E-166 1285.7 33.4 462 40-502 39-500 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 3E-146 7E-151 1206.4 40.8 448 49-502 1-451 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 6.9E-91 1.5E-95 770.5 37.5 421 55-501 1-434 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 1.1E-83 2.4E-88 709.3 23.9 402 71-500 1-411 (624)
5 TIGR00733 putative oligopeptid 98.9 1.4E-07 3.1E-12 104.8 21.4 220 72-338 2-225 (591)
6 COG1297 Predicted membrane pro 88.6 25 0.00055 39.8 17.4 168 67-259 10-179 (624)
7 PRK10983 putative inner membra 52.0 38 0.00082 36.1 6.7 78 403-482 170-247 (368)
8 COG0628 yhhT Predicted permeas 46.5 38 0.00082 35.4 5.7 92 399-493 160-253 (355)
9 cd03508 Delta4-sphingolipid-FA 39.9 47 0.001 34.4 5.0 39 444-487 16-55 (289)
10 TIGR02106 cyd_oper_ybgT cyd op 36.9 37 0.0008 23.8 2.5 18 76-93 5-22 (30)
11 PF08173 YbgT_YccB: Membrane b 34.9 42 0.00092 23.1 2.5 18 76-93 5-22 (28)
12 PF06645 SPC12: Microsomal sig 32.6 46 0.001 27.7 3.0 44 446-490 11-54 (76)
13 PRK14749 hypothetical protein; 32.6 49 0.0011 23.1 2.5 18 76-93 5-22 (30)
14 PF03606 DcuC: C4-dicarboxylat 29.1 1E+02 0.0022 33.9 5.8 19 443-461 251-269 (465)
15 TIGR02872 spore_ytvI sporulati 26.5 1.2E+02 0.0026 30.9 5.4 84 408-493 169-253 (341)
16 TIGR00802 nico high-affinity n 26.3 1.3E+02 0.0028 31.3 5.5 54 435-491 130-192 (280)
17 PF11166 DUF2951: Protein of u 26.1 57 0.0012 28.6 2.5 18 74-91 72-89 (98)
18 PLN02579 sphingolipid delta-4 26.1 1.3E+02 0.0029 31.6 5.8 15 471-485 67-82 (323)
19 PF05208 ALG3: ALG3 protein; 25.3 2.7E+02 0.0059 30.1 7.8 75 372-482 40-115 (368)
20 PF13829 DUF4191: Domain of un 23.9 1.9E+02 0.0042 29.1 6.1 43 440-487 24-66 (224)
21 PF11292 DUF3093: Protein of u 23.8 1.6E+02 0.0035 27.6 5.2 30 443-475 9-38 (143)
22 PF11674 DUF3270: Protein of u 23.3 1.6E+02 0.0035 25.6 4.7 18 472-489 65-82 (90)
23 TIGR03141 cytochro_ccmD heme e 22.6 1.2E+02 0.0025 22.7 3.3 31 390-421 6-37 (45)
24 PF14715 FixP_N: N-terminal do 22.3 1.2E+02 0.0026 23.5 3.4 27 440-467 17-43 (51)
25 PRK05978 hypothetical protein; 22.0 1.6E+02 0.0035 27.8 4.8 47 442-491 69-120 (148)
26 KOG3817 Uncharacterized conser 20.8 52 0.0011 35.4 1.5 17 40-56 423-439 (452)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-161 Score=1285.69 Aligned_cols=462 Identities=60% Similarity=1.101 Sum_probs=450.4
Q ss_pred cccccccccccCChhhhhhhcccCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHhhhhhhh
Q 010747 40 EITEAVVEEEENSPVKQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLM 119 (502)
Q Consensus 40 ~~~~~~~~~~~~SPy~eVra~v~~~DDp~~P~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~~plG~~~ 119 (502)
++|+++++++|||||||||++||++|||++|++|||||+||+++|+++|++||||.+|+|+++||.+++|+++||+||+|
T Consensus 39 ~~~e~~~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklm 118 (761)
T KOG2262|consen 39 IDDENELEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLM 118 (761)
T ss_pred ccccccccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHH
Confidence 34444457788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCceeecCCCceeeecCCCCCcccceeeeeecccCCCchhHHHHHHHHHHHhccCchHHHHHHHHHHHhhhhhhHh
Q 010747 120 AAKLTDRVFFKSTPLEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQVLGFGWA 199 (502)
Q Consensus 120 a~~lP~~~~~~~~~~~f~LNPGPFniKEH~litIma~~~~~~aya~~ii~~q~lfy~~~~~~~~~ill~lstQliGyG~A 199 (502)
||+||+|++..+++|+|+|||||||+|||++|||+||++++++||+++|.+|+.|||+++++++++|++++||++|||+|
T Consensus 119 a~~lP~~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwA 198 (761)
T KOG2262|consen 119 AKTLPTWKFGLGGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWA 198 (761)
T ss_pred HHhCCceeeecCcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHh
Confidence 99999999832789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceecCCCcccchhHHHHHHHHHhhhccccCCCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhccCCCc
Q 010747 200 GIFRRYLVEPAAMWWPANLVQVSLFRALHEREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSV 279 (502)
Q Consensus 200 Gl~R~~LV~P~~miWP~~L~~vaL~~aLh~~~~~~~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~ 279 (502)
||+||+||||++|+||++|++|+||||||++|++.+.++||+|||.++|+++|+|||+|+||||.||+|||+||+.|+|+
T Consensus 199 Gl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~ 278 (761)
T KOG2262|consen 199 GLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSI 278 (761)
T ss_pred hhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccH
Confidence 99999999999999999999999999999999888877999999999999999999999999999999999999999999
Q ss_pred eEEEeccccccccccccccchhhhhhhcCCCccccHHHHHHHHHHHHHHHHHHhhhhhhccccCCcCccCcccccccCCC
Q 010747 280 VAQQVGSGLYGLGVAAVGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTG 359 (502)
Q Consensus 280 ~~~~lfGg~~GLGl~p~tfDW~~I~~~~~sPL~~P~~a~~N~~~G~v~~~~ii~p~lyy~N~w~s~~~Pi~S~~lfd~~G 359 (502)
++||||||.+|||++|+||||++|++|++|||++||||.+|+++|+++++||++|++||+|+|+++||||+|+++||++|
T Consensus 279 ~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG 358 (761)
T KOG2262|consen 279 TANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTG 358 (761)
T ss_pred HHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecceecCCCCccCHHHHHHhCCCcchHHHHHHHHHHHHHHHhHhhhhhhhcCHHHHHHhhhcccCCCCCchHHhhhc
Q 010747 360 REYNITAIIDSNFHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGREIWEQSRASFQEKGMDIHTKLMRK 439 (502)
Q Consensus 360 ~~Ynvs~Vl~~~~~ld~~aY~~yspp~ls~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~~~~~~~~~D~H~rlM~~ 439 (502)
++||++||||+|++||.+|||+|||+|+|++|+++||++||+++|+++|++||||||||++.|.+ .++++|+|+|||||
T Consensus 359 ~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~-~~k~~DiHtrlMkk 437 (761)
T KOG2262|consen 359 NSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKA-FNKKMDIHTRLMKK 437 (761)
T ss_pred cEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhc-cccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 57889999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHhhhhhheeccCCCC
Q 010747 440 YKRVPESWFVIILLINIAATVFACEYYNDQLQLPWWGVLLACAIAITFTLPIGIITAITNQVL 502 (502)
Q Consensus 440 YkevP~WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl~~al~i~~i~~lP~gii~A~tn~~~ 502 (502)
|||||+|||++++++++++++++|++|+++.|+||||+++|++|++++++|+|+|+|+|||++
T Consensus 438 YKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~ 500 (761)
T KOG2262|consen 438 YKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTP 500 (761)
T ss_pred hccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCc
Confidence 999999999999999999999999999988899999999999999999999999999999985
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=3.1e-146 Score=1206.37 Aligned_cols=448 Identities=32% Similarity=0.644 Sum_probs=433.9
Q ss_pred ccCChhhhhhhcccCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHhhhhhhhhcccCCcee
Q 010747 49 EENSPVKQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVF 128 (502)
Q Consensus 49 ~~~SPy~eVra~v~~~DDp~~P~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~~plG~~~a~~lP~~~~ 128 (502)
||||||||||++|+++|||++|++|||+|++|++++++++++||+|.+|+|+++++++++||++||+||+|||+||++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCceeeecCCCCCcccceeeeeecccCCCchhHHHHHHHHHHHhccCchHHHHHHHHHHHhhhhhhHhhhcccceec
Q 010747 129 FKSTPLEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVE 208 (502)
Q Consensus 129 ~~~~~~~f~LNPGPFniKEH~litIma~~~~~~aya~~ii~~q~lfy~~~~~~~~~ill~lstQliGyG~AGl~R~~LV~ 208 (502)
+.++++|+|||||||+|||++|+||||++++.+|+++++.+|++|||++.+++++|++++|+|++|||+||++||++||
T Consensus 81 -~~~g~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~ 159 (681)
T TIGR00727 81 -TIRGRKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVVY 159 (681)
T ss_pred -ccccceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEec
Confidence 3344678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhHHHHHHHHHhhhcccc--CCCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhccCCCceEEEecc
Q 010747 209 PAAMWWPANLVQVSLFRALHEREKR--ASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGS 286 (502)
Q Consensus 209 P~~miWP~~L~~vaL~~aLh~~~~~--~~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~~~~lfG 286 (502)
|++|+||++|++++|+|+||+++++ ++|++||+|||+++|+++|+|||+|+||||+||+|||+|||+|||+++|||||
T Consensus 160 p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g 239 (681)
T TIGR00727 160 PARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFG 239 (681)
T ss_pred cccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhc
Confidence 9999999999999999999986643 23779999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-cccchhhhhhhcCCCccccHHHHHHHHHHHHHHHHHHhhhhhhccccCCcCccCcccccccCCCceeecc
Q 010747 287 GLYGLGVAA-VGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTGREYNIT 365 (502)
Q Consensus 287 g~~GLGl~p-~tfDW~~I~~~~~sPL~~P~~a~~N~~~G~v~~~~ii~p~lyy~N~w~s~~~Pi~S~~lfd~~G~~Ynvs 365 (502)
|.+|||++| +|||||+|+++.+|||++|+|+++|+++|+++++|+++|++||+|+|+++||||+||++|||+|++||+|
T Consensus 240 ~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~vs 319 (681)
T TIGR00727 240 GSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNVT 319 (681)
T ss_pred cccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCccccc
Confidence 999999999 8999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccCHHHHHHhCCCcchHHHHHHHHHHHHHHHhHhhhhhhhcCHHHHHHhhhcccCCCCCchHHhhhcCCCCCh
Q 010747 366 AIIDSNFHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGREIWEQSRASFQEKGMDIHTKLMRKYKRVPE 445 (502)
Q Consensus 366 ~Vl~~~~~ld~~aY~~yspp~ls~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~~~~~~~~~D~H~rlM~~YkevP~ 445 (502)
||||+|++||+||||||||||++++|+++||++||+++|+++|++||||||||+++|+ ++++|+|+|+||||||||+
T Consensus 320 ~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~---~~~~D~h~rlM~~Y~evP~ 396 (681)
T TIGR00727 320 EILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD---DDYPDPHSNLMKAYKEVPD 396 (681)
T ss_pred eeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc---CCCCChhHHHhhcCCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999974 5678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHhhhhhheeccCCCC
Q 010747 446 SWFVIILLINIAATVFACEYYNDQLQLPWWGVLLACAIAITFTLPIGIITAITNQVL 502 (502)
Q Consensus 446 WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl~~al~i~~i~~lP~gii~A~tn~~~ 502 (502)
|||+++++++++++++++++|+ +|+|||++++|++|++++++|+|+++|+||+|+
T Consensus 397 WWy~~~l~is~~~~~~~v~~~~--t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~ 451 (681)
T TIGR00727 397 WWYLAVFLGFFGMGIATVEHWP--TETPVWGLFVCLIFNFVFLIPTTILQATTNISF 451 (681)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHhhhheEeecCCcc
Confidence 9999999999999999999996 799999999999999999999999999999984
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=6.9e-91 Score=770.46 Aligned_cols=421 Identities=38% Similarity=0.667 Sum_probs=393.2
Q ss_pred hhhhhcccCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHhhhhhhhhcccCCceeecCCCc
Q 010747 55 KQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPL 134 (502)
Q Consensus 55 ~eVra~v~~~DDp~~P~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~~plG~~~a~~lP~~~~~~~~~~ 134 (502)
||||+ ||++|||++|++|||+|++|++++++++++||+|.+|++.++++++++|+++||+||+|+|++|+|+ ++
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~-----~~ 74 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE-----GW 74 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc-----cc
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999986 37
Q ss_pred eeeecCCCCCcccceeeeeecccCCCchhHHHHHHHHHHHhccCchHHHHHHHHHHHhh--hhhhHhhhcccceecCCCc
Q 010747 135 EFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQV--LGFGWAGIFRRYLVEPAAM 212 (502)
Q Consensus 135 ~f~LNPGPFniKEH~litIma~~~~~~aya~~ii~~q~lfy~~~~~~~~~ill~lstQl--iGyG~AGl~R~~LV~P~~m 212 (502)
+|+|||||||+|||+++++|||++.+.+++++++.+|++||+++.++++++++++++|+ +|+|+||++||++|+|++|
T Consensus 75 ~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l 154 (654)
T TIGR00728 75 KFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKL 154 (654)
T ss_pred ceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccc
Confidence 78999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccchhHHHHHHHHHhhhccccC-CCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhccCCCceEEEeccccccc
Q 010747 213 WWPANLVQVSLFRALHEREKRA-SGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGL 291 (502)
Q Consensus 213 iWP~~L~~vaL~~aLh~~~~~~-~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~~~~lfGg~~GL 291 (502)
+||+.+++++|+|+||++.+.. +++++| +++.+ |.++|+.++.++|+||+.|++..++ +|| |+
T Consensus 155 ~~P~~la~a~l~~al~~~~~~~~g~~~~r---~l~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---gl 218 (654)
T TIGR00728 155 PWPSGLATAELFKALHGKFHTANGDTIAK---NLLRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---GL 218 (654)
T ss_pred cCCcccHHHHHHHHhhhccCccCCCccch---hHHHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---cc
Confidence 9999999999999998754433 234555 33222 8899999999999999999988885 555 89
Q ss_pred cccccccchhhhhhhcCCCccccHHHHHHHHHHHHHHHHHHhhhhhhccccCCcCccCcccccccCCCceeec-ceecCC
Q 010747 292 GVAAVGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTGREYNI-TAIIDS 370 (502)
Q Consensus 292 Gl~p~tfDW~~I~~~~~sPL~~P~~a~~N~~~G~v~~~~ii~p~lyy~N~w~s~~~Pi~S~~lfd~~G~~Ynv-s~Vl~~ 370 (502)
|++|++|||+++.++.++|+.+|+++++|.++|.+++.|+++|++||+|+|+++++|++|++.||++|++||. ++|+++
T Consensus 219 g~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~ 298 (654)
T TIGR00728 219 GSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVVD 298 (654)
T ss_pred cccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEeC
Confidence 9999999999997788999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred C-CccCHHHHHHhCCCcchHHHHHHHHHHHHHHHhHhhhhhhhcCHHHHHHhhhcccCCCCCchHHhhhcC--------C
Q 010747 371 N-FHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGREIWEQSRASFQEKGMDIHTKLMRKY--------K 441 (502)
Q Consensus 371 ~-~~ld~~aY~~yspp~ls~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~~~~~~~~~D~H~rlM~~Y--------k 441 (502)
+ .++|++||++|||+|++++| |+++||+++++++|++++|+||+++++|+. .++.+|.|.|+||+| |
T Consensus 299 ~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~ 374 (654)
T TIGR00728 299 GLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDH-YKLGRDDHVRLLSRDEDLKVKNYK 374 (654)
T ss_pred CCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-hhccCCCChHHHhhcccccccccC
Confidence 8 79999999999999999999 999999999999999999999999998776 455678888887776 9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHhhhhhheeccCCC
Q 010747 442 RVPESWFVIILLINIAATVFACEYYNDQLQLPWWGVLLACAIAITFTLPIGIITAITNQV 501 (502)
Q Consensus 442 evP~WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl~~al~i~~i~~lP~gii~A~tn~~ 501 (502)
|||+|||+++++++++++++++++|+.++++|||++++|+++++++.+|.|.++|+||.+
T Consensus 375 ~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~ 434 (654)
T TIGR00728 375 EVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPV 434 (654)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeeccc
Confidence 999999999999999999999999976689999999999999999999999999999875
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.1e-83 Score=709.26 Aligned_cols=402 Identities=37% Similarity=0.666 Sum_probs=381.4
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHhhhhhhhhcccCCceeecCCCceeeecCCCCCccccee
Q 010747 71 VLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVKEHVL 150 (502)
Q Consensus 71 ~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~~plG~~~a~~lP~~~~~~~~~~~f~LNPGPFniKEH~l 150 (502)
|+|||++++|++++++++++||+|.+|++.+..+++++|+++||+||+|+| .+++++|||||||+|||++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~----------~~~~~~ln~gp~~~kE~~~ 70 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLAR----------IGWRFSLNPGPFTIKENNL 70 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHh----------hccccccCCCCCCHHHHHH
Confidence 689999999999999999999999999999999999999999999999998 1245679999999999999
Q ss_pred eeeecccCCCchhHHHHHHH--HHHHhccCchHHHHHHHHHHHhhhhhhHhhhcccceecCCCcccchhHHHHHHHHHhh
Q 010747 151 ITIFANSGAGSVYAIHIVTV--VKVFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRALH 228 (502)
Q Consensus 151 itIma~~~~~~aya~~ii~~--q~lfy~~~~~~~~~ill~lstQliGyG~AGl~R~~LV~P~~miWP~~L~~vaL~~aLh 228 (502)
+.+||+++++.+++.+++.+ |.+|||++++++.++++++++|++|+|+||++||++|+|++|+||+.+++++++++||
T Consensus 71 vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh 150 (624)
T PF03169_consen 71 VQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALH 150 (624)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHhc
Confidence 99999999999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhccCCCceEEEeccccccccccccccchhhhhhhcC
Q 010747 229 EREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGLGVAAVGIDWSTISSYLG 308 (502)
Q Consensus 229 ~~~~~~~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~~~~lfGg~~GLGl~p~tfDW~~I~~~~~ 308 (502)
+++.. +..++|+|+|+++|+++|+|+|+|+|+||+|+.++|+||++|+|++++++||+.. ++||||.+. .+
T Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~~--~g 221 (624)
T PF03169_consen 151 SGGGW-REAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPIL--IG 221 (624)
T ss_pred cCccc-hhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHHh--cC
Confidence 98721 1235999999999999999999999999999999999999999999999998866 999999986 68
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhhhhhhc-cccCCcCccCcccccccCCCceeecceecCCCCccCHHHHHHhCCCcc
Q 010747 309 SPLASPWFATANVAAGFVLVMYVLTPLCYWL-NIYNAKTFPIFSDQLFTTTGREYNITAIIDSNFHIDIAAYQREGPLYL 387 (502)
Q Consensus 309 sPL~~P~~a~~N~~~G~v~~~~ii~p~lyy~-N~w~s~~~Pi~S~~lfd~~G~~Ynvs~Vl~~~~~ld~~aY~~yspp~l 387 (502)
+|+.+|+++++|.++|.+++.|++.|++||+ |.|+++++|++|+++||++|+ +|+++|.++|++||++++
T Consensus 222 ~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~~~~ 292 (624)
T PF03169_consen 222 SGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGPMYG 292 (624)
T ss_pred CCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999 889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhHhhhhhhhcCHHHHHHhhhc------ccCCCCCchHHhhhcCCCCChHHHHHHHHHHHHHHHH
Q 010747 388 SIFFATTYGLGFAALTATIVHVALFHGREIWEQSRAS------FQEKGMDIHTKLMRKYKRVPESWFVIILLINIAATVF 461 (502)
Q Consensus 388 s~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~~~------~~~~~~D~H~rlM~~YkevP~WWy~~il~vs~~l~i~ 461 (502)
++.++++|+..|+.++++++|.+++|+|+++++++++ .+++++|+|+|+||+|||||+|||++.++++++++++
T Consensus 293 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~ 372 (624)
T PF03169_consen 293 SGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAII 372 (624)
T ss_pred hHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877432 2456789999999999999999999999999999999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHHHHhhhhhheeccCC
Q 010747 462 ACEYYNDQLQLPWWGVLLACAIAITFTLPIGIITAITNQ 500 (502)
Q Consensus 462 ~~~~~~~~t~lP~Wgl~~al~i~~i~~lP~gii~A~tn~ 500 (502)
+++.+.+++++|||++++++++++++.+|.+.++|+||+
T Consensus 373 ~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~ 411 (624)
T PF03169_consen 373 VVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI 411 (624)
T ss_pred HHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999998778999999999999999999999999999998
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=98.89 E-value=1.4e-07 Score=104.80 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=157.8
Q ss_pred cchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHhhhhhhhhcccCCceeecCCCceeeecCCCCCcccceee
Q 010747 72 LTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVKEHVLI 151 (502)
Q Consensus 72 ~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~~plG~~~a~~lP~~~~~~~~~~~f~LNPGPFniKEH~li 151 (502)
.|+|+.++|++++++-++.|....+|.=-..=.++.+-++++-+=|++. ++|+.|+.++
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~---------------------~~t~~Enniv 60 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR---------------------DRSILENNMV 60 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc---------------------cCChhHHHHH
Confidence 6999999999999999999999999976666666777777766555331 2689999998
Q ss_pred eeecccCCCchhHHHHHHHH-HHHh-c--cCchHHHHHHHHHHHhhhhhhHhhhcccceecCCCcccchhHHHHHHHHHh
Q 010747 152 TIFANSGAGSVYAIHIVTVV-KVFY-K--QHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRAL 227 (502)
Q Consensus 152 tIma~~~~~~aya~~ii~~q-~lfy-~--~~~~~~~~ill~lstQliGyG~AGl~R~~LV~P~~miWP~~L~~vaL~~aL 227 (502)
--+|+++.+-+ . ++.+. .++. + ++++++.-++.+++--++|--++=.+||.+|...+.-||+--.+.-+.++-
T Consensus 61 QT~asA~~~~a--g-~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g 137 (591)
T TIGR00733 61 QTAASAAGTLS--S-VIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAG 137 (591)
T ss_pred HHHHHHHHHHH--H-HHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcc
Confidence 88877765333 2 33332 2322 2 357788888888899999999999999999999999999999998888864
Q ss_pred hhccccCCCCcccchhhHHHHHHHHHHHhhhhHHHHhhhhhhhhhhccCCCceEEEeccccccccccccccchhhhhhhc
Q 010747 228 HEREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGLGVAAVGIDWSTISSYL 307 (502)
Q Consensus 228 h~~~~~~~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~~~~lfGg~~GLGl~p~tfDW~~I~~~~ 307 (502)
.+. + +.++.|.-...++.+++|.++++ +.... ...-.|.. .|.+..-+++||+- .++
T Consensus 138 ~~g--~---~~~~~~~l~~g~~~s~~~~~~~~--~~~~~-~~~~~~~~-------------~g~~~~~~~~~~Sp--alv 194 (591)
T TIGR00733 138 DKA--R---NGTGAKPIAYGGILASIYAFLGS--LRVWS-GTLSAAKL-------------VGRRALYFGSDLSL--ALI 194 (591)
T ss_pred ccc--c---chhhHHHHHHHHHHHHHHHHHHH--hccCC-chHHHHHh-------------cCCcceEEEecccH--HHH
Confidence 221 1 12456777778888899988843 22211 11111211 01112224578874 367
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhhhhhh
Q 010747 308 GSPLASPWFATANVAAGFVLVMYVLTPLCYW 338 (502)
Q Consensus 308 ~sPL~~P~~a~~N~~~G~v~~~~ii~p~lyy 338 (502)
|.=..++.-..+..++|.++.-.++.|.+..
T Consensus 195 G~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~ 225 (591)
T TIGR00733 195 GVGYLVGLNIGFAMFLGGAIAWGVAIPIYTA 225 (591)
T ss_pred cCceeeChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788999999999999999977778887764
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=88.65 E-value=25 Score=39.85 Aligned_cols=168 Identities=19% Similarity=0.284 Sum_probs=108.7
Q ss_pred CCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHhhhhhhhhcccCCceeecCCCceeeecCCCCCcc
Q 010747 67 TCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVK 146 (502)
Q Consensus 67 p~~P~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~ql~~~plG~~~a~~lP~~~~~~~~~~~f~LNPGPFniK 146 (502)
-++|-.|+|..++|+..+++..+-|..+-+|.---..+++-+-+++. +-+.+ | .++|+-
T Consensus 10 ~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISm--avlk~---------------~----~~~sil 68 (624)
T COG1297 10 AFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISM--AVLKA---------------F----KGSSIL 68 (624)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHH--HHHHH---------------h----Cccchh
Confidence 36899999999999999999999999999997777777777777662 11111 1 278999
Q ss_pred cceeeeeecccCCCchh-HHHHHHHHHH-HhccCchHHHHHHHHHHHhhhhhhHhhhcccceecCCCcccchhHHHHHHH
Q 010747 147 EHVLITIFANSGAGSVY-AIHIVTVVKV-FYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLF 224 (502)
Q Consensus 147 EH~litIma~~~~~~ay-a~~ii~~q~l-fy~~~~~~~~~ill~lstQliGyG~AGl~R~~LV~P~~miWP~~L~~vaL~ 224 (502)
|+-++--||+++.+.+- .+.++..... =|.|++++.--....-.--++|-=+.==+||-+|-+++.=||.--...-++
T Consensus 69 ENNmVQT~ASAagtlsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEvL 148 (624)
T COG1297 69 ENNMVQTQASAAGTLSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEVL 148 (624)
T ss_pred hhHHHHHHHhhhccccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHHH
Confidence 99999889888765444 3344433332 234555543322222222233333333379999999999999999999999
Q ss_pred HHhhhccccCCCCcccchhhHHHHHHHHHHHhhhh
Q 010747 225 RALHEREKRASGGVTRTQFFMMGFVCSFAYYVFPG 259 (502)
Q Consensus 225 ~aLh~~~~~~~~~isR~rfF~~~f~~~Fvy~~~P~ 259 (502)
++...++... |-.|--.+......+|-++-+
T Consensus 149 ~~g~~~~gd~----~g~~~i~~g~~~~~~~~~l~~ 179 (624)
T COG1297 149 KAGNQREGDA----SGIKLIALGGALAALYSLLAS 179 (624)
T ss_pred HhcCCCCCCc----ccchhhhhhhHHHHHHHHHhc
Confidence 9987333221 222333334444455554443
No 7
>PRK10983 putative inner membrane protein; Provisional
Probab=51.99 E-value=38 Score=36.12 Aligned_cols=78 Identities=8% Similarity=0.014 Sum_probs=35.0
Q ss_pred HhHhhhhhhhcCHHHHHHhhhcccCCCCCchHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 010747 403 TATIVHVALFHGREIWEQSRASFQEKGMDIHTKLMRKYKRVPESWFVIILLINIAATVFACEYYNDQLQLPWWGVLLACA 482 (502)
Q Consensus 403 ta~i~h~~L~~~~~i~~~~~~~~~~~~~D~H~rlM~~YkevP~WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl~~al~ 482 (502)
+-.++..++.+++.+++.+++....-.+|.+.++.++..+.=.-+....++++++.|+++...+- =.++| .+++++++
T Consensus 170 ~l~~~ff~l~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~~l~a~i~gvl~~ig~~-i~gvp-~a~llg~l 247 (368)
T PRK10983 170 MLLFSALLYWRGEQVALGIRHFATRLAGKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLA-ISGVP-YATLLTVL 247 (368)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC-HHHHHHHH
Confidence 34445555666777766665421122234454554444333333344444555544443333322 14566 23444443
No 8
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=46.46 E-value=38 Score=35.40 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=53.2
Q ss_pred HHHHHhHhhhhhhhcCHHHHHHhhhcccCCCCCchHHhhhc-CCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Q 010747 399 FAALTATIVHVALFHGREIWEQSRASFQEKGMDIHTKLMRK-YKRVPESWFVIILLINIAATVFACEYYNDQLQLPWWGV 477 (502)
Q Consensus 399 fa~~ta~i~h~~L~~~~~i~~~~~~~~~~~~~D~H~rlM~~-YkevP~WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl 477 (502)
...+.-.++..+|.+++++++.+++...++..+...|..++ .+.+-.|.. .-.+++++.|+.+..++- =.++| .++
T Consensus 160 ~~~l~~~~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~-gq~i~al~~gi~~~igl~-ilgvp-~al 236 (355)
T COG0628 160 SLLLVLVLLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLR-GQVLVALIVGILTGIGLL-ILGVP-YAL 236 (355)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHccc-HHH
Confidence 33444556666777899999988665323323333333333 445544544 444556666665444432 25566 466
Q ss_pred HHHHHHHHHHHhh-hhh
Q 010747 478 LLACAIAITFTLP-IGI 493 (502)
Q Consensus 478 ~~al~i~~i~~lP-~gi 493 (502)
.++++.++.-.+| +|-
T Consensus 237 llgil~g~~~lIP~iG~ 253 (355)
T COG0628 237 LLGLLAGLLSLIPYIGP 253 (355)
T ss_pred HHHHHHHHHHhhccccc
Confidence 7888888888888 543
No 9
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=39.88 E-value=47 Score=34.37 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH-HHHHHHHHHH
Q 010747 444 PESWFVIILLINIAATVFACEYYNDQLQLPWWGV-LLACAIAITF 487 (502)
Q Consensus 444 P~WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl-~~al~i~~i~ 487 (502)
|..+++++..+.+.++.+. .. .+.+||.. ++|++++...
T Consensus 16 ~~~~~~~~~~v~~~~~~~~--~l---~~~sw~~~ll~a~vi~~~~ 55 (289)
T cd03508 16 PLTKWVVLGVVLLQIITAY--LL---RDSSWWKILLVAYFFGGTI 55 (289)
T ss_pred cchHHHHHHHHHHHHHHHH--HH---hcCcHHHHHHHHHHHHHHH
Confidence 5555555555544444322 22 23577754 5555555444
No 10
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=36.91 E-value=37 Score=23.76 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 010747 76 MWVLGTLSCVLLSFLNQF 93 (502)
Q Consensus 76 ~~~lG~~~~~~ga~inq~ 93 (502)
+|++|+.+++..+.+|.+
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999865
No 11
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=34.89 E-value=42 Score=23.11 Aligned_cols=18 Identities=33% Similarity=0.759 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 010747 76 MWVLGTLSCVLLSFLNQF 93 (502)
Q Consensus 76 ~~~lG~~~~~~ga~inq~ 93 (502)
+|++|+.+++..+.+|.+
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998865
No 12
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=32.64 E-value=46 Score=27.74 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHhh
Q 010747 446 SWFVIILLINIAATVFACEYYNDQLQLPWWGVLLACAIAITFTLP 490 (502)
Q Consensus 446 WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl~~al~i~~i~~lP 490 (502)
..+-.+++++.++|+++..... +..+..+.+..+++++++.++|
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q-~~~~~~~~~~~g~~~~~lv~vP 54 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQ-SFSYTFYIYGAGVVLTLLVVVP 54 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhheeC
Confidence 3445667777777776665543 5778889999999998888877
No 13
>PRK14749 hypothetical protein; Provisional
Probab=32.57 E-value=49 Score=23.12 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 010747 76 MWVLGTLSCVLLSFLNQF 93 (502)
Q Consensus 76 ~~~lG~~~~~~ga~inq~ 93 (502)
+|++|+.+++..+.+|-+
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999865
No 14
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=29.06 E-value=1e+02 Score=33.85 Aligned_cols=19 Identities=0% Similarity=0.300 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 010747 443 VPESWFVIILLINIAATVF 461 (502)
Q Consensus 443 vP~WWy~~il~vs~~l~i~ 461 (502)
.++++|++++++.+++-+.
T Consensus 251 ~~~~~~~~~~~l~~~~li~ 269 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIY 269 (465)
T ss_pred cccceeehHHHHHHHHHHh
Confidence 5788999999999887765
No 15
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=26.51 E-value=1.2e+02 Score=30.87 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=38.9
Q ss_pred hhhhhcCHHHHHHhhhcccCCCCCchHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHH
Q 010747 408 HVALFHGREIWEQSRASFQEKGMDIHTKLMRKYKRVPESWFVIILLINIAATVFACEYYNDQLQLPWWGVLLACAIAITF 487 (502)
Q Consensus 408 h~~L~~~~~i~~~~~~~~~~~~~D~H~rlM~~YkevP~WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl~~al~i~~i~ 487 (502)
...+..++++++.+++-..+++++...+++++-.++=.=+....++++++.++++...+- =.++| .+++++++.++.-
T Consensus 169 ff~l~d~~~~~~~~~~l~p~~~~~~~~~i~~~i~~~~~~y~~~~~~~~~i~g~~~~i~~~-~~gvp-~a~~~~~l~~~~~ 246 (341)
T TIGR02872 169 FFISKDLPRLKSKLFSILPERTSQKLKNIFSELKKAAFGFLKAQLILVLITFVIVLIGLL-IIGVD-YALTLALIIGIVD 246 (341)
T ss_pred HHHHccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCc-hHHHHHHHHHHHH
Confidence 334445555666554331111112222333332222222344455555555554443332 25677 4566777777777
Q ss_pred Hhh-hhh
Q 010747 488 TLP-IGI 493 (502)
Q Consensus 488 ~lP-~gi 493 (502)
.+| +|.
T Consensus 247 ~IP~vG~ 253 (341)
T TIGR02872 247 ILPILGP 253 (341)
T ss_pred hhhhcCc
Confidence 777 344
No 16
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=26.30 E-value=1.3e+02 Score=31.25 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=26.8
Q ss_pred Hhhhc-CCCCChHHHHHHHHHHHHHHH--------HHHHhcCCCCCccHHHHHHHHHHHHHHHhhh
Q 010747 435 KLMRK-YKRVPESWFVIILLINIAATV--------FACEYYNDQLQLPWWGVLLACAIAITFTLPI 491 (502)
Q Consensus 435 rlM~~-YkevP~WWy~~il~vs~~l~i--------~~~~~~~~~t~lP~Wgl~~al~i~~i~~lP~ 491 (502)
|+.++ +|-|-.-|.+...-+=|++|+ +....-....++|||.+++ +++.|+.-+
T Consensus 130 Rll~~lf~~v~~pw~mypvG~LFGLGFDTATEIaLL~isa~~a~~g~~~~~il~---lP~LFtaGM 192 (280)
T TIGR00802 130 RLLGPLFRLVTKSWHMYPVGFLFGLGFDTATEVALLGLSASAAARGLSIAAVLS---LPVLFAAGM 192 (280)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHcccchHHHHHHHHHHHHHhccCCChHHHHH---HHHHHHhhh
Confidence 55555 555767776655444444331 2221221124699998743 344444433
No 17
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=26.13 E-value=57 Score=28.63 Aligned_cols=18 Identities=28% Similarity=0.763 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 010747 74 FRMWVLGTLSCVLLSFLN 91 (502)
Q Consensus 74 fR~~~lG~~~~~~ga~in 91 (502)
+|||++|++-+++|+.+=
T Consensus 72 ~KmwilGlvgTi~gslii 89 (98)
T PF11166_consen 72 IKMWILGLVGTIFGSLII 89 (98)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999987653
No 18
>PLN02579 sphingolipid delta-4 desaturase
Probab=26.08 E-value=1.3e+02 Score=31.60 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=8.8
Q ss_pred CccHHHHHH-HHHHHH
Q 010747 471 QLPWWGVLL-ACAIAI 485 (502)
Q Consensus 471 ~lP~Wgl~~-al~i~~ 485 (502)
+.+||.+++ |.+++.
T Consensus 67 ~~~w~~~l~~a~~~~g 82 (323)
T PLN02579 67 DAGWPKILLVAYFFGG 82 (323)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 478887666 344443
No 19
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.26 E-value=2.7e+02 Score=30.12 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=46.3
Q ss_pred CccCHHHHH-HhCCCcchHHHHHHHHHHHHHHHhHhhhhhhhcCHHHHHHhhhcccCCCCCchHHhhhcCCCCChHHHHH
Q 010747 372 FHIDIAAYQ-REGPLYLSIFFATTYGLGFAALTATIVHVALFHGREIWEQSRASFQEKGMDIHTKLMRKYKRVPESWFVI 450 (502)
Q Consensus 372 ~~ld~~aY~-~yspp~ls~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~~~~~~~~~D~H~rlM~~YkevP~WWy~~ 450 (502)
|+.|-++.+ .-||.-++++|+..|..-+ -+ .++.+|++.- ++-|..
T Consensus 40 Ge~DYs~i~GdTGPlVYPAGfVyiY~~Ly---------~l---------------T~~G~~I~~a---------Q~iF~~ 86 (368)
T PF05208_consen 40 GERDYSKIKGDTGPLVYPAGFVYIYSFLY---------YL---------------TDGGENIRLA---------QYIFAG 86 (368)
T ss_pred CcccHHHhcCCCCCccccchHHHHHHHHH---------HH---------------hcCCCcHHHH---------HHHHHH
Confidence 677776665 3589999999987663322 11 2333455543 567777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 010747 451 ILLINIAATVFACEYYNDQLQLPWWGVLLACA 482 (502)
Q Consensus 451 il~vs~~l~i~~~~~~~~~t~lP~Wgl~~al~ 482 (502)
+-++.+++-+.+ |....++|.|.+++.++
T Consensus 87 lyl~t~~~v~~~---Y~~~~~~Pp~~~~ll~l 115 (368)
T PF05208_consen 87 LYLATLALVFRI---YSRSRKLPPWLLILLCL 115 (368)
T ss_pred HHHHHHHHHHHH---HHhccCCCchHHHHHHH
Confidence 777766655433 31236788888876654
No 20
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.89 E-value=1.9e+02 Score=29.12 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHH
Q 010747 440 YKRVPESWFVIILLINIAATVFACEYYNDQLQLPWWGVLLACAIAITF 487 (502)
Q Consensus 440 YkevP~WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wgl~~al~i~~i~ 487 (502)
+|.+| ||-+..+++.++++++....+ +.+|+.+++++.++++.
T Consensus 24 dp~l~-~~ml~a~l~~~~v~v~ig~l~----~~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 24 DPKLP-WLMLGAFLGPIAVFVLIGLLF----GSWWYWLIIGILLGLLA 66 (224)
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHH
Confidence 67776 444555556666666555554 35677777777776544
No 21
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=23.82 E-value=1.6e+02 Score=27.63 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCCCccHH
Q 010747 443 VPESWFVIILLINIAATVFACEYYNDQLQLPWW 475 (502)
Q Consensus 443 vP~WWy~~il~vs~~l~i~~~~~~~~~t~lP~W 475 (502)
+|.||+++-++++-.++....... ..++.|
T Consensus 9 ~p~~wW~~~~~~~~~~~~~v~~~~---~~~~~~ 38 (143)
T PF11292_consen 9 VPWWWWLAAAAVAALLAAEVVLGP---PSLWAW 38 (143)
T ss_pred CCHHHHHHHHHHHHHHHHhhhcCc---chHHHH
Confidence 788888777666334343333222 345555
No 22
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=23.31 E-value=1.6e+02 Score=25.58 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.7
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 010747 472 LPWWGVLLACAIAITFTL 489 (502)
Q Consensus 472 lP~Wgl~~al~i~~i~~l 489 (502)
-|||++.+|++++...+.
T Consensus 65 ~t~~Af~~Ai~~Sl~~~~ 82 (90)
T PF11674_consen 65 NTFWAFPLAILISLAITQ 82 (90)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 489999999999966554
No 23
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=22.59 E-value=1.2e+02 Score=22.71 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.1
Q ss_pred HHHH-HHHHHHHHHHhHhhhhhhhcCHHHHHHh
Q 010747 390 FFAT-TYGLGFAALTATIVHVALFHGREIWEQS 421 (502)
Q Consensus 390 ~~~~-~y~~~fa~~ta~i~h~~L~~~~~i~~~~ 421 (502)
.|++ +||++++++...+.+...-+++ +.+.+
T Consensus 6 ~yVW~sYg~t~l~l~~li~~~~~~~r~-~~~~l 37 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLILWSLLDRRR-LLREL 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4665 8999999999888887776533 33433
No 24
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=22.31 E-value=1.2e+02 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=19.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 010747 440 YKRVPESWFVIILLINIAATVFACEYYN 467 (502)
Q Consensus 440 YkevP~WWy~~il~vs~~l~i~~~~~~~ 467 (502)
-..+|.||. .+|.+++++|++-...|+
T Consensus 17 dnplP~ww~-~~f~~tivfa~~Y~~~yp 43 (51)
T PF14715_consen 17 DNPLPRWWL-WLFYGTIVFAVGYLVLYP 43 (51)
T ss_pred cCCCCHHHH-HHHHHHHHHHHHHHHHHh
Confidence 467899886 456677888877666665
No 25
>PRK05978 hypothetical protein; Provisional
Probab=21.99 E-value=1.6e+02 Score=27.79 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH-----HHHHHHHHHHHHhhh
Q 010747 442 RVPESWFVIILLINIAATVFACEYYNDQLQLPWWG-----VLLACAIAITFTLPI 491 (502)
Q Consensus 442 evP~WWy~~il~vs~~l~i~~~~~~~~~t~lP~Wg-----l~~al~i~~i~~lP~ 491 (502)
|-|- |++++++..++..+....+- -.+.|+|. +.++++++.+++-|+
T Consensus 69 DgpA--y~~i~ivg~ivv~~~l~~~~-~~~pp~w~~~~i~~~l~lil~L~LL~p~ 120 (148)
T PRK05978 69 DLPA--YLVIVIVGHIVVGGFMGTET-TFNLPVWLHLAIWLPITLIASLALLQPI 120 (148)
T ss_pred ccCc--chhHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566 55555544433322222111 13578883 445555666666554
No 26
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=52 Score=35.39 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=9.6
Q ss_pred cccccccccccCChhhh
Q 010747 40 EITEAVVEEEENSPVKQ 56 (502)
Q Consensus 40 ~~~~~~~~~~~~SPy~e 56 (502)
...|+.+.+.++|||+|
T Consensus 423 ~~~p~~~s~~~~s~~~~ 439 (452)
T KOG3817|consen 423 NSEPEPESESDDSEEEE 439 (452)
T ss_pred cCCCCCcccccCchhhh
Confidence 34444445556677766
Done!