Query 010747
Match_columns 502
No_of_seqs 140 out of 716
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 61.7 10 0.00035 36.2 5.4 58 428-495 100-161 (214)
2 2knc_A Integrin alpha-IIB; tra 27.0 61 0.0021 24.5 3.6 21 470-490 8-28 (54)
3 2k1a_A Integrin alpha-IIB; sin 26.5 68 0.0023 23.0 3.7 22 469-490 5-26 (42)
4 2l8s_A Integrin alpha-1; trans 22.1 78 0.0027 24.0 3.4 20 470-489 5-24 (54)
5 2l8s_A Integrin alpha-1; trans 13.6 2.7E+02 0.0091 21.0 4.6 41 308-349 2-43 (54)
6 3s0x_A Peptidase A24B, FLAK do 9.4 4.7E+02 0.016 25.1 6.0 24 439-462 27-50 (237)
7 2v2f_A Penicillin binding prot 9.1 1.1E+02 0.0038 18.9 1.0 13 350-362 5-17 (26)
8 3mk7_C Cytochrome C oxidase, C 8.2 2.6E+02 0.0091 27.2 3.8 28 439-467 50-77 (311)
9 2knc_A Integrin alpha-IIB; tra 7.5 5.4E+02 0.018 19.3 4.3 40 310-350 7-47 (54)
10 2kr6_A Presenilin-1; protease, 5.6 9.1E+02 0.031 22.2 5.6 12 74-85 120-131 (176)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=61.75 E-value=10 Score=36.16 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCCchHHhhhcCCCCChHHHHHHHHHHHHHHHHH----HHhcCCCCCccHHHHHHHHHHHHHHHhhhhhhe
Q 010747 428 KGMDIHTKLMRKYKRVPESWFVIILLINIAATVFA----CEYYNDQLQLPWWGVLLACAIAITFTLPIGIIT 495 (502)
Q Consensus 428 ~~~D~H~rlM~~YkevP~WWy~~il~vs~~l~i~~----~~~~~~~t~lP~Wgl~~al~i~~i~~lP~gii~ 495 (502)
-.++||.| |++|=|+ .|-|-..+.+-+-++-++ +..|+ .+- -|...+.+.++|.++++
T Consensus 100 v~esPH~r-~~~yIE~-AW~fST~lGi~LFL~evall~WVKF~~----~~~----~aa~~~t~vliPv~i~F 161 (214)
T 4hkr_A 100 VHESPHER-LHWYIET-AWAFSTLLGLILFLLEIAILCWVKFYD----LSR----RAAWSATVVLIPVMIIF 161 (214)
T ss_dssp ----CHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTT----TCH----HHHHHHHHHTHHHHHHH
T ss_pred cCCChHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHhheEEeec----CCc----HHHHHHHHHHHHHHHHH
Confidence 34689999 6889886 777765443333333222 23343 121 24455567778888765
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.02 E-value=61 Score=24.52 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=13.1
Q ss_pred CCccHHHHHHHHHHHHHHHhh
Q 010747 470 LQLPWWGVLLACAIAITFTLP 490 (502)
Q Consensus 470 t~lP~Wgl~~al~i~~i~~lP 490 (502)
...|||-+++|++.+.+++..
T Consensus 8 ~~vp~wiIi~svl~GLllL~l 28 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTI 28 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHH
Confidence 457777777776666555443
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=26.52 E-value=68 Score=22.99 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHHHHHhh
Q 010747 469 QLQLPWWGVLLACAIAITFTLP 490 (502)
Q Consensus 469 ~t~lP~Wgl~~al~i~~i~~lP 490 (502)
+...|||-+++|++.+.++...
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~l 26 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLTI 26 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHH
Confidence 3457888887777776655543
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.11 E-value=78 Score=23.97 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=11.6
Q ss_pred CCccHHHHHHHHHHHHHHHh
Q 010747 470 LQLPWWGVLLACAIAITFTL 489 (502)
Q Consensus 470 t~lP~Wgl~~al~i~~i~~l 489 (502)
...|||-+++|++.+.+++.
T Consensus 5 ~~vp~WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLM 24 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHH
Confidence 34666666666665554443
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=13.64 E-value=2.7e+02 Score=21.03 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCccccHHHHHHH-HHHHHHHHHHHhhhhhhccccCCcCccC
Q 010747 308 GSPLASPWFATANV-AAGFVLVMYVLTPLCYWLNIYNAKTFPI 349 (502)
Q Consensus 308 ~sPL~~P~~a~~N~-~~G~v~~~~ii~p~lyy~N~w~s~~~Pi 349 (502)
|.|-..|+|-++-. .+|.++ .-+++.++|--+.+.-++-+.
T Consensus 2 ~~~~~vp~WiIi~svl~GLLL-L~Lii~~LwK~GFFKR~~~~~ 43 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLL-LMLLILALWKIGFFKRPLKKK 43 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHH-HHHHHHHHHHHHHTTSCCSCC
T ss_pred CCCccCchHHHHHHHHHHHHH-HHHHHHHHHHcCcccCCCcch
Confidence 45667898876555 455555 445566888778776665444
No 6
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=9.36 E-value=4.7e+02 Score=25.05 Aligned_cols=24 Identities=0% Similarity=0.383 Sum_probs=16.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHH
Q 010747 439 KYKRVPESWFVIILLINIAATVFA 462 (502)
Q Consensus 439 ~YkevP~WWy~~il~vs~~l~i~~ 462 (502)
|++++|+|-...++++++.+++..
T Consensus 27 k~R~IpN~l~~~ll~~gi~l~~~~ 50 (237)
T 3s0x_A 27 RSREIEDYIWIFLAVFGVLFAIYS 50 (237)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHH
T ss_pred hhcEeCchhHHHHHHHHHHHHHHH
Confidence 467899998888887777766543
No 7
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=9.12 E-value=1.1e+02 Score=18.89 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=10.0
Q ss_pred cccccccCCCcee
Q 010747 350 FSDQLFTTTGREY 362 (502)
Q Consensus 350 ~S~~lfd~~G~~Y 362 (502)
.++.+||++|+.-
T Consensus 5 ~ss~IYD~~g~~i 17 (26)
T 2v2f_A 5 TSSKIYDNKNQLI 17 (26)
T ss_pred CCCEEEeCCCCEe
Confidence 5678999998753
No 8
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=8.17 E-value=2.6e+02 Score=27.21 Aligned_cols=28 Identities=14% Similarity=0.406 Sum_probs=20.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 010747 439 KYKRVPESWFVIILLINIAATVFACEYYN 467 (502)
Q Consensus 439 ~YkevP~WWy~~il~vs~~l~i~~~~~~~ 467 (502)
--+.+|.||... |+++++++++-...|+
T Consensus 50 ~~nplp~ww~~~-f~~~iv~~~~y~~~yp 77 (311)
T 3mk7_C 50 YDNPLPRWWFLL-FIGTLVFGILYLVLYP 77 (311)
T ss_dssp CCCCCCHHHHHH-HHHHHHHHHHHHHHST
T ss_pred ccCCCChHHHHH-HHHHHHHHHHHHHHHh
Confidence 356789999755 6677788877777776
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.46 E-value=5.4e+02 Score=19.28 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=26.5
Q ss_pred CccccHHHHHHH-HHHHHHHHHHHhhhhhhccccCCcCccCc
Q 010747 310 PLASPWFATANV-AAGFVLVMYVLTPLCYWLNIYNAKTFPIF 350 (502)
Q Consensus 310 PL~~P~~a~~N~-~~G~v~~~~ii~p~lyy~N~w~s~~~Pi~ 350 (502)
+--.|+|-++-. .+|.++ .-+++.++|--+.+.-++-|..
T Consensus 7 ~~~vp~wiIi~svl~GLll-L~li~~~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLL-LTILVLAMWKVGFFKRNRPPLE 47 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTCCSCC
T ss_pred CCCcchHHHHHHHHHHHHH-HHHHHHHHHHcCcccCCCCCcc
Confidence 445799986555 455555 4455668888888877776654
No 10
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=5.58 E-value=9.1e+02 Score=22.24 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=4.6
Q ss_pred hhHHHHHHHHHH
Q 010747 74 FRMWVLGTLSCV 85 (502)
Q Consensus 74 fR~~~lG~~~~~ 85 (502)
|.++++|++.+.
T Consensus 120 ~vaIL~GL~~TL 131 (176)
T 2kr6_A 120 FVAILIGLCLTL 131 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444433333
Done!