Query 010748
Match_columns 502
No_of_seqs 794 out of 4248
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0270 WD40 repeat-containing 100.0 6.7E-83 1.4E-87 580.5 34.8 458 1-493 3-462 (463)
2 KOG0271 Notchless-like WD40 re 100.0 2E-46 4.2E-51 335.6 25.5 301 136-492 112-451 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-43 9.7E-48 318.1 20.7 286 137-478 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.5E-41 3.2E-46 304.3 24.1 290 136-478 154-479 (480)
5 KOG0286 G-protein beta subunit 100.0 3.7E-40 8E-45 285.9 27.2 292 136-478 52-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-41 3.3E-46 308.2 18.7 248 206-494 184-432 (459)
7 KOG0284 Polyadenylation factor 100.0 6.7E-39 1.5E-43 289.7 17.4 284 139-479 96-379 (464)
8 KOG0273 Beta-transducin family 100.0 3.6E-37 7.8E-42 283.3 27.2 298 138-489 177-491 (524)
9 KOG0263 Transcription initiati 100.0 1.4E-37 3.1E-42 303.3 24.6 264 206-485 387-654 (707)
10 KOG0315 G-protein beta subunit 100.0 1.2E-36 2.7E-41 258.3 26.7 290 153-494 12-302 (311)
11 KOG0286 G-protein beta subunit 100.0 3E-35 6.4E-40 255.5 27.0 253 194-494 59-317 (343)
12 KOG0279 G protein beta subunit 100.0 1.2E-34 2.6E-39 250.3 28.6 288 136-481 12-314 (315)
13 KOG0295 WD40 repeat-containing 100.0 2.8E-35 6E-40 262.8 25.1 287 136-479 105-405 (406)
14 KOG0277 Peroxisomal targeting 100.0 1.3E-35 2.7E-40 252.9 21.5 293 143-479 12-308 (311)
15 KOG0296 Angio-associated migra 100.0 1.2E-34 2.7E-39 258.9 27.5 283 137-480 62-398 (399)
16 KOG0291 WD40-repeat-containing 100.0 2.4E-34 5.3E-39 278.3 31.6 291 140-490 266-560 (893)
17 KOG0279 G protein beta subunit 100.0 9.3E-35 2E-39 251.0 24.8 249 208-495 27-277 (315)
18 KOG0273 Beta-transducin family 100.0 1.1E-33 2.3E-38 260.5 28.6 282 138-480 234-523 (524)
19 KOG0263 Transcription initiati 100.0 2.2E-34 4.8E-39 281.1 22.8 274 139-468 378-703 (707)
20 KOG0265 U5 snRNP-specific prot 100.0 2.5E-33 5.4E-38 244.5 25.0 249 206-494 56-310 (338)
21 KOG0284 Polyadenylation factor 100.0 1.2E-34 2.6E-39 262.2 16.1 244 193-486 99-343 (464)
22 KOG0265 U5 snRNP-specific prot 100.0 7.1E-33 1.5E-37 241.7 25.7 287 136-476 44-334 (338)
23 KOG0285 Pleiotropic regulator 100.0 5.8E-34 1.3E-38 253.6 19.2 240 204-488 158-397 (460)
24 KOG0313 Microtubule binding pr 100.0 1E-32 2.3E-37 247.6 26.5 292 136-480 102-418 (423)
25 PLN00181 protein SPA1-RELATED; 100.0 8.1E-32 1.7E-36 289.5 38.0 295 137-479 481-792 (793)
26 cd00200 WD40 WD40 domain, foun 100.0 1E-31 2.3E-36 253.7 34.3 283 137-478 7-289 (289)
27 KOG0319 WD40-repeat-containing 100.0 3.2E-33 6.9E-38 270.3 23.7 290 138-482 322-621 (775)
28 KOG0266 WD40 repeat-containing 100.0 2.7E-32 5.9E-37 273.2 29.5 286 138-480 158-454 (456)
29 KOG0276 Vesicle coat complex C 100.0 1.9E-32 4.1E-37 260.0 26.5 286 138-481 12-299 (794)
30 KOG0318 WD40 repeat stress pro 100.0 2.1E-31 4.6E-36 248.4 30.9 324 135-485 186-565 (603)
31 KOG0319 WD40-repeat-containing 100.0 2.1E-32 4.6E-37 264.6 24.8 297 139-494 281-591 (775)
32 KOG0264 Nucleosome remodeling 100.0 6.1E-32 1.3E-36 248.6 25.3 251 206-481 134-405 (422)
33 KOG0645 WD40 repeat protein [G 100.0 2.3E-31 5.1E-36 229.0 27.0 283 136-480 11-311 (312)
34 KOG0293 WD40 repeat-containing 100.0 1.3E-31 2.8E-36 242.9 24.4 290 136-482 221-515 (519)
35 KOG0282 mRNA splicing factor [ 100.0 2.2E-32 4.8E-37 252.8 19.7 289 136-478 211-503 (503)
36 KOG0277 Peroxisomal targeting 100.0 5.1E-32 1.1E-36 231.0 18.7 220 265-494 59-279 (311)
37 KOG0291 WD40-repeat-containing 100.0 1.4E-30 2.9E-35 252.5 30.7 322 139-485 96-513 (893)
38 KOG0281 Beta-TrCP (transducin 100.0 8.6E-33 1.9E-37 245.3 14.3 277 138-485 196-482 (499)
39 KOG0285 Pleiotropic regulator 100.0 2.6E-31 5.6E-36 236.8 23.6 284 136-479 148-438 (460)
40 KOG0295 WD40 repeat-containing 100.0 6.9E-32 1.5E-36 241.2 19.6 244 205-490 116-374 (406)
41 KOG0310 Conserved WD40 repeat- 100.0 7.7E-31 1.7E-35 243.1 26.4 286 138-483 25-312 (487)
42 KOG0275 Conserved WD40 repeat- 100.0 4E-32 8.7E-37 239.0 16.6 289 138-478 212-507 (508)
43 KOG0281 Beta-TrCP (transducin 100.0 1.1E-32 2.3E-37 244.7 12.9 231 193-485 200-433 (499)
44 KOG0266 WD40 repeat-containing 100.0 1.6E-30 3.4E-35 260.5 28.5 250 204-492 166-421 (456)
45 KOG0315 G-protein beta subunit 100.0 3.2E-30 7E-35 219.3 25.9 282 109-458 21-309 (311)
46 KOG0305 Anaphase promoting com 100.0 3.1E-30 6.7E-35 248.2 29.2 280 142-483 180-464 (484)
47 KOG0292 Vesicle coat complex C 100.0 1.4E-30 3E-35 256.1 26.2 288 138-483 8-324 (1202)
48 KOG0276 Vesicle coat complex C 100.0 3.7E-31 8.1E-36 251.3 21.2 240 206-486 22-263 (794)
49 KOG0292 Vesicle coat complex C 100.0 6.3E-31 1.4E-35 258.5 22.3 254 203-488 15-288 (1202)
50 KOG0283 WD40 repeat-containing 100.0 2.1E-30 4.5E-35 255.6 24.9 265 204-481 274-577 (712)
51 PTZ00421 coronin; Provisional 100.0 3.8E-29 8.2E-34 249.6 31.7 255 206-487 29-297 (493)
52 PLN00181 protein SPA1-RELATED; 100.0 4.8E-29 1E-33 268.1 34.6 252 194-484 487-742 (793)
53 KOG0264 Nucleosome remodeling 100.0 1.6E-29 3.4E-34 232.7 25.6 267 137-436 122-405 (422)
54 KOG0316 Conserved WD40 repeat- 100.0 4.7E-30 1E-34 216.6 19.5 235 206-487 26-264 (307)
55 KOG0641 WD40 repeat protein [G 100.0 2.2E-28 4.8E-33 205.2 29.3 292 138-480 31-349 (350)
56 KOG0318 WD40 repeat stress pro 100.0 1.1E-28 2.5E-33 230.2 30.5 314 122-484 42-396 (603)
57 KOG0645 WD40 repeat protein [G 100.0 7.4E-29 1.6E-33 213.7 26.8 234 206-481 23-262 (312)
58 PTZ00420 coronin; Provisional 100.0 1.9E-28 4E-33 245.6 34.0 229 215-483 50-296 (568)
59 KOG0299 U3 snoRNP-associated p 100.0 1.8E-29 3.8E-34 232.3 22.5 291 137-480 140-456 (479)
60 KOG0306 WD40-repeat-containing 100.0 3E-29 6.4E-34 243.1 24.9 286 136-484 370-668 (888)
61 KOG0282 mRNA splicing factor [ 100.0 3.4E-30 7.5E-35 238.3 17.0 253 194-491 218-473 (503)
62 KOG0275 Conserved WD40 repeat- 100.0 1.3E-29 2.8E-34 223.2 18.0 255 205-491 221-478 (508)
63 cd00200 WD40 WD40 domain, foun 100.0 5.9E-28 1.3E-32 228.0 30.9 246 194-489 13-258 (289)
64 KOG0772 Uncharacterized conser 100.0 1.1E-28 2.3E-33 229.8 25.0 303 136-478 164-485 (641)
65 KOG0643 Translation initiation 100.0 1.6E-28 3.4E-33 211.2 23.1 235 206-481 19-318 (327)
66 KOG1407 WD40 repeat protein [F 100.0 2.7E-28 5.9E-33 209.1 22.9 249 194-491 24-272 (313)
67 KOG0274 Cdc4 and related F-box 100.0 2.7E-28 5.8E-33 243.7 26.6 288 138-493 207-495 (537)
68 KOG0647 mRNA export protein (c 100.0 5.5E-28 1.2E-32 211.3 24.9 277 138-471 26-315 (347)
69 PTZ00421 coronin; Provisional 100.0 2.4E-27 5.2E-32 236.6 32.9 248 194-482 79-333 (493)
70 KOG0278 Serine/threonine kinas 100.0 4.5E-29 9.7E-34 212.5 16.0 289 135-485 10-302 (334)
71 KOG0313 Microtubule binding pr 100.0 3.1E-28 6.6E-33 219.0 22.2 241 209-491 115-388 (423)
72 KOG0316 Conserved WD40 repeat- 100.0 6.9E-28 1.5E-32 203.6 22.5 280 136-479 14-298 (307)
73 KOG0269 WD40 repeat-containing 100.0 2.3E-28 5E-33 237.9 21.2 296 139-481 39-341 (839)
74 KOG0269 WD40 repeat-containing 100.0 1.3E-28 2.7E-33 239.7 18.3 258 206-494 48-310 (839)
75 KOG0296 Angio-associated migra 100.0 7.5E-28 1.6E-32 215.5 21.3 254 206-494 73-370 (399)
76 KOG0973 Histone transcription 100.0 1.4E-27 2.9E-32 241.5 24.9 314 138-483 12-358 (942)
77 KOG0268 Sof1-like rRNA process 100.0 1.6E-28 3.5E-33 219.4 15.5 293 129-485 57-350 (433)
78 KOG0288 WD40 repeat protein Ti 100.0 3.9E-28 8.5E-33 220.5 17.5 282 136-477 172-458 (459)
79 KOG1036 Mitotic spindle checkp 100.0 9E-27 2E-31 204.6 25.3 272 138-470 12-294 (323)
80 KOG0274 Cdc4 and related F-box 100.0 4.2E-27 9.1E-32 235.1 23.7 235 209-491 218-452 (537)
81 KOG0772 Uncharacterized conser 100.0 5.1E-27 1.1E-31 218.7 21.6 253 206-491 176-456 (641)
82 KOG1446 Histone H3 (Lys4) meth 100.0 2.4E-25 5.2E-30 196.6 30.7 245 206-491 23-273 (311)
83 KOG0294 WD40 repeat-containing 100.0 8.1E-26 1.8E-30 198.9 27.2 230 208-483 52-284 (362)
84 KOG0308 Conserved WD40 repeat- 100.0 2.4E-27 5.3E-32 226.6 19.2 246 207-489 35-294 (735)
85 KOG1332 Vesicle coat complex C 100.0 9E-27 1.9E-31 197.9 20.4 241 208-480 22-286 (299)
86 KOG1446 Histone H3 (Lys4) meth 100.0 2.9E-25 6.4E-30 196.1 30.5 282 138-482 13-305 (311)
87 PTZ00420 coronin; Provisional 100.0 2.5E-25 5.5E-30 223.1 33.1 231 193-462 77-319 (568)
88 KOG0307 Vesicle coat complex C 99.9 1.8E-27 3.8E-32 241.7 15.4 304 144-483 11-330 (1049)
89 KOG0647 mRNA export protein (c 99.9 6.5E-26 1.4E-30 198.4 22.4 243 204-487 34-288 (347)
90 KOG0289 mRNA splicing factor [ 99.9 1.5E-25 3.3E-30 204.8 25.1 283 140-479 220-505 (506)
91 KOG0640 mRNA cleavage stimulat 99.9 3.4E-26 7.4E-31 200.6 19.8 289 137-480 110-426 (430)
92 KOG0305 Anaphase promoting com 99.9 4.3E-26 9.3E-31 219.7 22.3 246 138-438 216-464 (484)
93 KOG0293 WD40 repeat-containing 99.9 2.7E-26 5.8E-31 208.4 19.6 250 204-493 231-483 (519)
94 KOG0301 Phospholipase A2-activ 99.9 1.5E-25 3.2E-30 216.0 25.7 278 136-481 11-289 (745)
95 KOG0288 WD40 repeat protein Ti 99.9 7.8E-27 1.7E-31 212.1 14.9 245 207-494 185-431 (459)
96 KOG0640 mRNA cleavage stimulat 99.9 1.1E-26 2.4E-31 203.7 15.2 218 261-491 107-346 (430)
97 KOG0299 U3 snoRNP-associated p 99.9 1.8E-25 3.9E-30 206.1 22.9 254 206-484 151-414 (479)
98 KOG0639 Transducin-like enhanc 99.9 8.1E-26 1.8E-30 210.0 20.6 288 136-479 416-703 (705)
99 KOG0289 mRNA splicing factor [ 99.9 2.2E-25 4.8E-30 203.8 22.9 230 207-478 229-460 (506)
100 KOG0302 Ribosome Assembly prot 99.9 1.4E-25 3E-30 201.8 20.9 252 208-479 164-437 (440)
101 KOG1407 WD40 repeat protein [F 99.9 1.6E-24 3.4E-29 186.0 26.0 276 136-471 17-293 (313)
102 KOG0646 WD40 repeat protein [G 99.9 1E-25 2.2E-30 208.0 20.1 280 152-479 51-349 (476)
103 KOG0643 Translation initiation 99.9 5.7E-25 1.2E-29 189.3 22.7 226 261-495 5-235 (327)
104 KOG0306 WD40-repeat-containing 99.9 7.8E-25 1.7E-29 212.7 26.4 243 206-494 382-636 (888)
105 KOG0310 Conserved WD40 repeat- 99.9 1.3E-25 2.7E-30 208.6 19.3 212 262-487 64-275 (487)
106 KOG0283 WD40 repeat-containing 99.9 1.8E-25 3.9E-30 220.8 20.7 218 264-496 265-548 (712)
107 KOG0270 WD40 repeat-containing 99.9 2.2E-24 4.8E-29 198.1 23.2 242 151-439 192-453 (463)
108 KOG0300 WD40 repeat-containing 99.9 1.9E-24 4.2E-29 190.2 21.1 317 136-482 145-478 (481)
109 KOG0278 Serine/threonine kinas 99.9 1.5E-25 3.2E-30 191.1 13.4 245 136-439 56-301 (334)
110 KOG2055 WD40 repeat protein [G 99.9 2.8E-24 6E-29 198.2 22.5 293 139-480 213-512 (514)
111 KOG1408 WD40 repeat protein [F 99.9 3.6E-24 7.7E-29 206.7 24.1 320 142-483 327-716 (1080)
112 KOG0641 WD40 repeat protein [G 99.9 1.7E-23 3.7E-28 176.0 25.2 249 204-481 39-304 (350)
113 KOG1036 Mitotic spindle checkp 99.9 5.2E-24 1.1E-28 187.3 22.3 239 205-489 21-271 (323)
114 KOG0973 Histone transcription 99.9 3.6E-24 7.7E-29 216.9 24.2 250 206-486 22-318 (942)
115 KOG2445 Nuclear pore complex c 99.9 1.3E-23 2.9E-28 184.4 24.2 245 206-480 22-318 (361)
116 KOG0646 WD40 repeat protein [G 99.9 7.7E-24 1.7E-28 195.7 23.7 240 209-489 50-316 (476)
117 KOG0302 Ribosome Assembly prot 99.9 2.5E-24 5.4E-29 193.7 19.6 219 258-484 143-382 (440)
118 KOG0300 WD40 repeat-containing 99.9 2.2E-24 4.7E-29 189.9 17.4 246 208-496 159-444 (481)
119 KOG4283 Transcription-coupled 99.9 9.6E-24 2.1E-28 184.1 20.2 217 208-438 55-279 (397)
120 KOG1539 WD repeat protein [Gen 99.9 1.9E-23 4.2E-28 205.3 24.6 325 128-481 277-649 (910)
121 KOG4283 Transcription-coupled 99.9 5.2E-24 1.1E-28 185.8 18.2 220 263-493 40-289 (397)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.2E-22 7E-27 191.3 32.3 278 152-489 2-288 (300)
123 KOG1539 WD repeat protein [Gen 99.9 9.9E-23 2.1E-27 200.4 28.2 296 138-488 201-614 (910)
124 KOG0308 Conserved WD40 repeat- 99.9 9.7E-24 2.1E-28 202.1 20.7 282 144-481 29-328 (735)
125 KOG1273 WD40 repeat protein [G 99.9 1.7E-23 3.6E-28 184.3 19.7 247 206-492 32-292 (405)
126 KOG0290 Conserved WD40 repeat- 99.9 1.4E-22 3E-27 176.7 24.0 300 141-476 46-361 (364)
127 KOG4328 WD40 protein [Function 99.9 4.3E-23 9.3E-28 190.2 21.9 267 191-493 187-463 (498)
128 KOG4378 Nuclear protein COP1 [ 99.9 3.5E-23 7.6E-28 192.3 21.2 282 153-489 5-289 (673)
129 KOG0268 Sof1-like rRNA process 99.9 4.7E-24 1E-28 191.0 14.9 245 180-484 61-306 (433)
130 KOG0267 Microtubule severing p 99.9 7.4E-25 1.6E-29 212.1 10.2 222 207-471 38-259 (825)
131 KOG0267 Microtubule severing p 99.9 8.3E-25 1.8E-29 211.7 9.3 211 263-489 25-235 (825)
132 KOG1408 WD40 repeat protein [F 99.9 1.9E-22 4.1E-27 194.9 24.8 306 145-494 264-685 (1080)
133 KOG1274 WD40 repeat protein [G 99.9 3.1E-22 6.8E-27 199.1 26.6 276 138-477 12-297 (933)
134 KOG2106 Uncharacterized conser 99.9 1.4E-21 3.1E-26 182.2 29.1 282 139-481 200-522 (626)
135 KOG0301 Phospholipase A2-activ 99.9 1E-22 2.2E-27 196.6 20.0 225 208-480 24-249 (745)
136 KOG1332 Vesicle coat complex C 99.9 2.8E-22 6.2E-27 170.7 19.9 256 135-436 7-287 (299)
137 KOG4378 Nuclear protein COP1 [ 99.9 6E-22 1.3E-26 184.2 23.1 268 141-461 36-305 (673)
138 KOG1274 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 194.1 26.6 242 206-481 22-263 (933)
139 KOG4328 WD40 protein [Function 99.9 1.7E-22 3.8E-27 186.3 18.2 208 263-480 183-399 (498)
140 KOG1034 Transcriptional repres 99.9 1.2E-21 2.5E-26 173.7 22.1 304 135-480 34-383 (385)
141 KOG0321 WD40 repeat-containing 99.9 9.2E-22 2E-26 188.3 22.8 247 194-483 104-394 (720)
142 KOG2096 WD40 repeat protein [G 99.9 2.8E-21 6E-26 170.6 23.8 304 136-478 83-400 (420)
143 KOG0321 WD40 repeat-containing 99.9 2.2E-21 4.8E-26 185.7 21.7 256 207-489 62-356 (720)
144 KOG2106 Uncharacterized conser 99.9 3.3E-20 7.1E-25 173.1 27.9 296 138-494 153-491 (626)
145 KOG2048 WD40 repeat protein [G 99.9 1.4E-20 3E-25 181.6 26.3 283 140-481 26-320 (691)
146 KOG0650 WD40 repeat nucleolar 99.9 3.7E-21 8E-26 182.9 22.0 312 136-477 397-732 (733)
147 KOG2919 Guanine nucleotide-bin 99.9 6.8E-21 1.5E-25 168.5 21.6 291 139-471 49-361 (406)
148 KOG2445 Nuclear pore complex c 99.9 1.2E-20 2.5E-25 166.1 22.7 268 135-436 9-319 (361)
149 KOG0294 WD40 repeat-containing 99.9 7.4E-21 1.6E-25 167.8 21.4 250 211-496 3-253 (362)
150 KOG1007 WD repeat protein TSSC 99.9 2.3E-20 4.9E-25 162.8 23.4 208 264-481 121-362 (370)
151 KOG1587 Cytoplasmic dynein int 99.9 2.4E-20 5.2E-25 185.2 25.7 251 194-481 246-517 (555)
152 KOG0303 Actin-binding protein 99.9 1.7E-20 3.6E-25 170.2 22.3 223 258-493 73-307 (472)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-19 4.4E-24 171.9 28.0 238 209-488 1-245 (300)
154 KOG1188 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 167.5 18.2 195 209-437 40-244 (376)
155 KOG2048 WD40 repeat protein [G 99.9 1.7E-19 3.7E-24 174.2 26.3 236 206-484 34-279 (691)
156 KOG0307 Vesicle coat complex C 99.9 5.7E-21 1.2E-25 194.7 16.8 251 140-438 65-330 (1049)
157 KOG1063 RNA polymerase II elon 99.9 8.9E-20 1.9E-24 176.4 23.6 300 136-487 264-657 (764)
158 KOG0290 Conserved WD40 repeat- 99.9 5.1E-20 1.1E-24 160.8 19.7 253 193-482 47-320 (364)
159 KOG0639 Transducin-like enhanc 99.9 1.1E-20 2.3E-25 176.2 16.1 250 128-434 454-703 (705)
160 KOG1273 WD40 repeat protein [G 99.9 1.5E-19 3.3E-24 159.5 22.5 290 142-482 26-324 (405)
161 KOG2919 Guanine nucleotide-bin 99.8 1.9E-19 4.2E-24 159.4 20.6 247 206-481 58-328 (406)
162 KOG1538 Uncharacterized conser 99.8 8.6E-20 1.9E-24 175.5 19.7 274 141-481 14-294 (1081)
163 KOG0642 Cell-cycle nuclear pro 99.8 3.4E-20 7.3E-25 175.6 15.6 259 205-495 302-576 (577)
164 KOG1063 RNA polymerase II elon 99.8 7.2E-19 1.6E-23 170.2 22.5 332 120-490 172-612 (764)
165 KOG1007 WD repeat protein TSSC 99.8 1.3E-18 2.9E-23 151.8 21.6 269 137-435 61-361 (370)
166 KOG0650 WD40 repeat nucleolar 99.8 3E-19 6.4E-24 170.0 18.3 230 206-478 409-678 (733)
167 KOG1009 Chromatin assembly com 99.8 1.2E-18 2.7E-23 158.8 21.2 307 139-484 13-376 (434)
168 KOG1517 Guanine nucleotide bin 99.8 2.6E-18 5.7E-23 173.3 25.1 304 142-483 1067-1384(1387)
169 KOG0303 Actin-binding protein 99.8 2.4E-18 5.3E-23 156.3 22.1 231 194-462 85-322 (472)
170 KOG2096 WD40 repeat protein [G 99.8 1.6E-18 3.6E-23 153.2 20.0 206 260-480 80-308 (420)
171 KOG2055 WD40 repeat protein [G 99.8 2.6E-18 5.7E-23 159.0 20.9 238 206-482 222-469 (514)
172 KOG1524 WD40 repeat-containing 99.8 3.3E-18 7.2E-23 160.9 20.6 280 137-485 12-291 (737)
173 KOG1445 Tumor-specific antigen 99.8 1.2E-18 2.5E-23 166.9 17.8 260 206-498 588-862 (1012)
174 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-16 2.5E-21 159.6 31.6 297 136-483 62-362 (466)
175 KOG0649 WD40 repeat protein [G 99.8 3.1E-17 6.6E-22 140.0 21.9 243 206-481 19-275 (325)
176 KOG1310 WD40 repeat protein [G 99.8 3.2E-18 7E-23 161.5 16.1 230 260-491 44-314 (758)
177 KOG1188 WD40 repeat protein [G 99.8 1E-17 2.2E-22 149.7 17.3 199 280-487 41-249 (376)
178 KOG0642 Cell-cycle nuclear pro 99.8 3.8E-18 8.2E-23 161.9 15.3 270 137-448 292-572 (577)
179 KOG1445 Tumor-specific antigen 99.8 7.3E-18 1.6E-22 161.5 17.0 213 193-439 630-848 (1012)
180 KOG4227 WD40 repeat protein [G 99.8 5.7E-17 1.2E-21 147.1 20.7 294 136-480 53-387 (609)
181 KOG0322 G-protein beta subunit 99.8 1.7E-17 3.8E-22 143.2 16.2 290 128-479 5-322 (323)
182 KOG4227 WD40 repeat protein [G 99.8 4.8E-17 1E-21 147.6 19.5 244 205-482 64-324 (609)
183 KOG1963 WD40 repeat protein [G 99.8 4.8E-16 1E-20 155.1 28.0 308 142-493 163-551 (792)
184 KOG1587 Cytoplasmic dynein int 99.8 1.3E-16 2.7E-21 158.9 23.4 266 139-436 242-517 (555)
185 KOG1034 Transcriptional repres 99.8 4.4E-17 9.5E-22 144.9 17.7 217 264-485 87-342 (385)
186 PRK11028 6-phosphogluconolacto 99.8 2.9E-15 6.3E-20 145.3 31.7 242 206-481 43-305 (330)
187 KOG1009 Chromatin assembly com 99.8 6.6E-17 1.4E-21 147.7 18.2 254 209-487 26-336 (434)
188 KOG2110 Uncharacterized conser 99.8 1.1E-15 2.4E-20 138.3 25.7 230 206-483 14-251 (391)
189 KOG1523 Actin-related protein 99.8 3.2E-16 7E-21 139.1 21.8 251 189-477 9-275 (361)
190 KOG0771 Prolactin regulatory e 99.7 5.1E-16 1.1E-20 142.9 23.1 204 270-483 148-357 (398)
191 KOG0644 Uncharacterized conser 99.7 7.7E-18 1.7E-22 166.1 11.8 236 205-485 198-473 (1113)
192 COG2319 FOG: WD40 repeat [Gene 99.7 2.2E-15 4.7E-20 150.4 30.0 244 206-489 74-323 (466)
193 KOG0649 WD40 repeat protein [G 99.7 3.2E-15 6.9E-20 127.8 25.3 289 140-478 11-314 (325)
194 KOG1517 Guanine nucleotide bin 99.7 7.6E-16 1.7E-20 155.8 23.2 247 205-484 1072-1337(1387)
195 KOG0644 Uncharacterized conser 99.7 9.9E-18 2.1E-22 165.3 8.0 226 257-491 181-437 (1113)
196 KOG1334 WD40 repeat protein [G 99.7 1.8E-16 3.9E-21 147.9 15.3 306 136-484 139-470 (559)
197 KOG1538 Uncharacterized conser 99.7 3.5E-16 7.5E-21 150.9 17.1 230 203-479 18-251 (1081)
198 KOG1272 WD40-repeat-containing 99.7 3.2E-17 6.9E-22 152.0 9.5 224 205-478 137-360 (545)
199 KOG2139 WD40 repeat protein [G 99.7 2.7E-14 6E-19 128.9 26.9 306 140-480 99-431 (445)
200 KOG4497 Uncharacterized conser 99.7 5.6E-15 1.2E-19 131.6 21.8 290 145-488 14-399 (447)
201 KOG2394 WD40 protein DMR-N9 [G 99.7 3.8E-15 8.1E-20 140.8 20.2 231 142-414 126-384 (636)
202 KOG2111 Uncharacterized conser 99.7 3.6E-14 7.9E-19 126.2 25.3 180 289-484 75-260 (346)
203 PRK11028 6-phosphogluconolacto 99.7 5.7E-14 1.2E-18 136.2 28.7 249 140-435 35-304 (330)
204 KOG1310 WD40 repeat protein [G 99.7 7.7E-16 1.7E-20 145.6 14.9 221 180-439 45-307 (758)
205 KOG1523 Actin-related protein 99.7 3.1E-15 6.7E-20 132.9 17.5 209 265-483 9-239 (361)
206 KOG2139 WD40 repeat protein [G 99.7 1E-14 2.2E-19 131.6 20.9 241 206-487 107-390 (445)
207 KOG1272 WD40-repeat-containing 99.7 3.4E-16 7.4E-21 145.3 11.6 279 143-485 133-414 (545)
208 KOG1524 WD40 repeat-containing 99.7 3.1E-15 6.8E-20 141.2 16.6 183 279-482 75-257 (737)
209 KOG3881 Uncharacterized conser 99.7 1.9E-14 4.1E-19 131.2 21.0 213 264-491 103-331 (412)
210 KOG2321 WD40 repeat protein [G 99.7 3.8E-14 8.1E-19 135.1 23.0 286 136-481 48-344 (703)
211 PRK01742 tolB translocation pr 99.7 2.4E-14 5.2E-19 143.4 23.1 212 204-460 210-426 (429)
212 PRK01742 tolB translocation pr 99.6 3.1E-14 6.6E-19 142.6 23.5 203 263-489 200-412 (429)
213 KOG1240 Protein kinase contain 99.6 4E-14 8.7E-19 145.7 24.1 311 137-478 1046-1431(1431)
214 KOG1963 WD40 repeat protein [G 99.6 1.8E-13 3.9E-18 137.0 27.8 119 263-385 202-324 (792)
215 KOG1240 Protein kinase contain 99.6 2.7E-14 5.8E-19 147.0 20.5 224 256-491 1038-1284(1431)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 5.3E-15 1.2E-19 139.8 14.0 204 146-362 180-384 (636)
217 KOG2110 Uncharacterized conser 99.6 2E-12 4.4E-17 117.4 29.4 234 140-436 6-249 (391)
218 KOG0771 Prolactin regulatory e 99.6 8.1E-15 1.7E-19 135.1 14.1 192 206-436 153-355 (398)
219 KOG0309 Conserved WD40 repeat- 99.6 1.5E-14 3.2E-19 141.5 13.6 296 139-481 24-340 (1081)
220 KOG3881 Uncharacterized conser 99.6 2.8E-13 6.1E-18 123.7 18.8 214 209-460 115-342 (412)
221 PF10282 Lactonase: Lactonase, 99.6 7.2E-12 1.6E-16 121.7 30.2 279 163-480 12-322 (345)
222 PF02239 Cytochrom_D1: Cytochr 99.6 7.8E-12 1.7E-16 121.4 30.0 252 206-489 45-356 (369)
223 KOG4497 Uncharacterized conser 99.6 2.7E-14 5.8E-19 127.4 11.1 231 205-486 16-246 (447)
224 PF08662 eIF2A: Eukaryotic tra 99.6 5.5E-13 1.2E-17 117.6 19.1 156 313-486 9-184 (194)
225 PRK03629 tolB translocation pr 99.5 3.6E-12 7.8E-17 127.4 27.2 206 264-489 196-414 (429)
226 PRK02889 tolB translocation pr 99.5 1.7E-12 3.6E-17 129.9 24.8 200 264-479 193-402 (427)
227 PRK03629 tolB translocation pr 99.5 5.1E-12 1.1E-16 126.3 28.1 209 206-460 207-428 (429)
228 PRK05137 tolB translocation pr 99.5 2.5E-12 5.4E-17 129.3 25.9 203 264-484 199-416 (435)
229 KOG0322 G-protein beta subunit 99.5 4.2E-13 9.2E-18 116.4 16.5 159 264-434 148-322 (323)
230 PRK04922 tolB translocation pr 99.5 4.4E-12 9.6E-17 127.3 25.6 200 264-481 201-412 (433)
231 PRK04922 tolB translocation pr 99.5 7.8E-12 1.7E-16 125.5 26.2 211 203-459 209-432 (433)
232 KOG0280 Uncharacterized conser 99.5 1.4E-11 3.1E-16 108.6 24.0 244 208-483 83-336 (339)
233 KOG1354 Serine/threonine prote 99.5 4.6E-12 1E-16 114.0 21.1 295 139-485 25-364 (433)
234 KOG1334 WD40 repeat protein [G 99.5 5.1E-13 1.1E-17 125.2 15.3 257 206-493 151-437 (559)
235 KOG2321 WD40 repeat protein [G 99.5 2.6E-12 5.7E-17 122.7 20.2 241 206-487 60-309 (703)
236 KOG0280 Uncharacterized conser 99.5 1.9E-12 4E-17 114.1 15.8 201 206-436 130-334 (339)
237 PRK05137 tolB translocation pr 99.5 2.7E-11 5.9E-16 121.8 26.0 209 205-460 209-433 (435)
238 KOG4547 WD40 repeat-containing 99.5 9E-12 1.9E-16 120.0 20.5 189 278-481 4-221 (541)
239 PRK02889 tolB translocation pr 99.4 3E-11 6.5E-16 120.9 24.9 212 204-460 202-425 (427)
240 KOG2111 Uncharacterized conser 99.4 4.7E-10 1E-14 100.3 28.4 234 142-436 8-257 (346)
241 KOG2315 Predicted translation 99.4 5.2E-11 1.1E-15 114.0 23.3 287 141-489 75-399 (566)
242 KOG1409 Uncharacterized conser 99.4 2.3E-11 5.1E-16 109.5 19.4 250 135-436 20-271 (404)
243 PF08662 eIF2A: Eukaryotic tra 99.4 1.8E-11 3.8E-16 108.1 18.5 152 270-437 9-181 (194)
244 PRK04792 tolB translocation pr 99.4 1.8E-10 3.9E-15 115.7 26.9 206 264-487 215-431 (448)
245 TIGR02800 propeller_TolB tol-p 99.4 2.2E-10 4.8E-15 115.0 26.8 199 264-480 187-397 (417)
246 COG5354 Uncharacterized protei 99.4 4.4E-10 9.5E-15 106.5 26.4 306 138-483 31-398 (561)
247 PRK00178 tolB translocation pr 99.4 3E-10 6.4E-15 114.4 26.4 200 264-481 196-407 (430)
248 PF10282 Lactonase: Lactonase, 99.4 1.6E-09 3.5E-14 105.3 30.3 286 141-457 38-345 (345)
249 KOG4547 WD40 repeat-containing 99.4 2.2E-10 4.7E-15 110.6 23.2 194 206-436 2-221 (541)
250 PRK01029 tolB translocation pr 99.4 6.4E-10 1.4E-14 110.9 27.3 207 265-484 183-407 (428)
251 PF02239 Cytochrom_D1: Cytochr 99.3 3.6E-10 7.9E-15 109.8 24.3 196 280-487 6-209 (369)
252 KOG0974 WD-repeat protein WDR6 99.3 5E-10 1.1E-14 114.6 25.5 199 141-385 89-290 (967)
253 TIGR02800 propeller_TolB tol-p 99.3 7E-10 1.5E-14 111.4 25.4 190 204-436 196-398 (417)
254 KOG0974 WD-repeat protein WDR6 99.3 3.1E-10 6.6E-15 116.2 22.0 191 272-481 93-289 (967)
255 PRK04792 tolB translocation pr 99.3 1.6E-09 3.4E-14 108.9 26.8 214 203-460 223-447 (448)
256 COG2706 3-carboxymuconate cycl 99.3 2.2E-08 4.7E-13 91.8 31.1 287 164-491 16-332 (346)
257 PRK01029 tolB translocation pr 99.3 2E-09 4.3E-14 107.4 26.6 181 268-461 232-426 (428)
258 PRK00178 tolB translocation pr 99.3 2.1E-09 4.6E-14 108.2 26.9 211 205-460 206-428 (430)
259 KOG1064 RAVE (regulator of V-A 99.3 1.5E-11 3.3E-16 131.3 11.1 201 264-492 2206-2410(2439)
260 PLN02919 haloacid dehalogenase 99.3 8.8E-09 1.9E-13 113.0 31.3 262 206-484 576-892 (1057)
261 KOG2314 Translation initiation 99.2 3.2E-09 6.9E-14 101.6 22.8 291 141-484 251-577 (698)
262 KOG4714 Nucleoporin [Nuclear s 99.2 1.3E-10 2.8E-15 101.0 11.9 149 279-436 101-255 (319)
263 TIGR02658 TTQ_MADH_Hv methylam 99.2 6E-08 1.3E-12 92.3 29.7 250 206-488 54-338 (352)
264 KOG1409 Uncharacterized conser 99.2 2.1E-09 4.6E-14 97.1 18.4 235 207-483 34-273 (404)
265 PF04762 IKI3: IKI3 family; I 99.2 3.3E-08 7.2E-13 106.6 30.5 314 138-482 74-458 (928)
266 KOG2315 Predicted translation 99.2 1.5E-08 3.3E-13 97.4 24.6 284 141-488 36-352 (566)
267 KOG4532 WD40-like repeat conta 99.2 1.2E-08 2.5E-13 89.4 20.9 238 208-481 83-332 (344)
268 KOG1354 Serine/threonine prote 99.2 7.1E-10 1.5E-14 100.1 13.8 206 265-481 24-302 (433)
269 COG2706 3-carboxymuconate cycl 99.2 3.3E-07 7.1E-12 84.2 30.8 289 137-458 37-345 (346)
270 KOG2041 WD40 repeat protein [G 99.1 6.5E-09 1.4E-13 102.3 20.8 126 194-340 18-145 (1189)
271 COG5170 CDC55 Serine/threonine 99.1 2.6E-09 5.7E-14 95.2 15.4 253 206-479 35-366 (460)
272 KOG4532 WD40-like repeat conta 99.1 2.7E-08 5.9E-13 87.1 20.6 201 280-489 85-291 (344)
273 KOG4190 Uncharacterized conser 99.1 1.4E-10 2.9E-15 110.7 6.6 210 260-485 729-953 (1034)
274 KOG1064 RAVE (regulator of V-A 99.1 8.6E-10 1.9E-14 118.3 13.2 186 140-385 2209-2400(2439)
275 KOG0309 Conserved WD40 repeat- 99.1 9.5E-10 2.1E-14 108.4 12.2 221 206-462 33-258 (1081)
276 KOG2314 Translation initiation 99.0 8E-08 1.7E-12 92.3 23.0 282 142-481 213-526 (698)
277 PF15492 Nbas_N: Neuroblastoma 99.0 4.6E-07 1E-11 80.8 26.1 237 145-438 3-262 (282)
278 PF15492 Nbas_N: Neuroblastoma 99.0 5.7E-07 1.2E-11 80.2 25.8 196 267-488 44-267 (282)
279 KOG1912 WD40 repeat protein [G 99.0 1.2E-07 2.7E-12 94.5 23.0 298 138-485 14-369 (1062)
280 PRK04043 tolB translocation pr 99.0 4.4E-07 9.5E-12 90.1 27.2 196 268-481 189-401 (419)
281 PLN02919 haloacid dehalogenase 99.0 6.4E-07 1.4E-11 98.6 29.6 168 269-439 685-892 (1057)
282 KOG1912 WD40 repeat protein [G 99.0 1.5E-07 3.2E-12 93.9 21.9 241 206-481 24-305 (1062)
283 PF04762 IKI3: IKI3 family; I 99.0 3.6E-06 7.8E-11 91.1 34.4 304 138-483 208-567 (928)
284 COG4946 Uncharacterized protei 98.9 6.8E-07 1.5E-11 84.5 24.1 175 274-467 327-506 (668)
285 COG5170 CDC55 Serine/threonine 98.9 3.4E-08 7.4E-13 88.2 14.5 274 138-434 25-366 (460)
286 KOG2695 WD40 repeat protein [G 98.9 7.2E-09 1.6E-13 93.8 9.5 171 316-495 218-391 (425)
287 KOG1645 RING-finger-containing 98.9 4E-08 8.7E-13 90.8 14.5 221 261-491 188-430 (463)
288 KOG3914 WD repeat protein WDR4 98.9 3.4E-08 7.3E-13 91.4 13.9 161 141-345 64-228 (390)
289 COG4946 Uncharacterized protei 98.9 3.2E-06 6.9E-11 80.1 26.2 197 146-385 273-479 (668)
290 KOG0882 Cyclophilin-related pe 98.9 3.7E-08 8.1E-13 92.2 13.4 250 208-487 19-312 (558)
291 KOG2695 WD40 repeat protein [G 98.9 8.7E-09 1.9E-13 93.3 8.5 177 273-459 218-402 (425)
292 TIGR03300 assembly_YfgL outer 98.9 4.9E-06 1.1E-10 82.3 29.0 229 208-489 104-347 (377)
293 KOG3914 WD repeat protein WDR4 98.8 7.7E-08 1.7E-12 89.1 14.1 160 314-487 67-230 (390)
294 KOG0882 Cyclophilin-related pe 98.8 2.8E-08 6E-13 93.1 11.0 212 264-488 7-239 (558)
295 PF08450 SGL: SMP-30/Gluconola 98.8 1.2E-05 2.6E-10 74.4 28.5 220 208-469 11-245 (246)
296 KOG1275 PAB-dependent poly(A) 98.8 1.2E-07 2.5E-12 96.3 15.4 186 208-433 146-340 (1118)
297 TIGR03300 assembly_YfgL outer 98.8 5.5E-06 1.2E-10 81.9 27.5 262 150-477 104-376 (377)
298 KOG4714 Nucleoporin [Nuclear s 98.8 2.7E-08 5.9E-13 86.8 9.4 199 269-481 39-255 (319)
299 KOG1008 Uncharacterized conser 98.8 4.2E-09 9.2E-14 102.7 4.7 245 194-479 60-334 (783)
300 PRK04043 tolB translocation pr 98.8 4.9E-06 1.1E-10 82.7 26.2 192 204-438 194-403 (419)
301 TIGR02658 TTQ_MADH_Hv methylam 98.8 2.1E-05 4.5E-10 75.2 28.3 241 146-438 52-333 (352)
302 COG5354 Uncharacterized protei 98.7 1.3E-06 2.8E-11 83.5 18.1 240 204-489 39-357 (561)
303 KOG2041 WD40 repeat protein [G 98.7 2.6E-07 5.6E-12 91.3 13.4 198 266-478 14-245 (1189)
304 KOG1275 PAB-dependent poly(A) 98.7 8.2E-07 1.8E-11 90.4 16.0 182 279-478 147-340 (1118)
305 KOG4190 Uncharacterized conser 98.7 2E-07 4.4E-12 89.4 11.2 232 207-478 745-986 (1034)
306 KOG2066 Vacuolar assembly/sort 98.6 1.4E-06 3E-11 87.8 17.1 188 265-480 38-233 (846)
307 KOG1832 HIV-1 Vpr-binding prot 98.6 1.9E-08 4.1E-13 101.4 3.4 201 259-488 1094-1299(1516)
308 KOG1008 Uncharacterized conser 98.6 1.5E-08 3.2E-13 99.0 2.0 204 265-481 55-276 (783)
309 PF08450 SGL: SMP-30/Gluconola 98.6 6.4E-05 1.4E-09 69.5 25.5 198 271-488 4-220 (246)
310 PF00400 WD40: WD domain, G-be 98.6 2.1E-07 4.6E-12 58.5 6.1 39 299-338 1-39 (39)
311 KOG1645 RING-finger-containing 98.6 5.1E-07 1.1E-11 83.7 10.3 167 291-470 175-351 (463)
312 KOG1920 IkappaB kinase complex 98.5 2.3E-05 4.9E-10 82.7 23.2 286 138-479 67-364 (1265)
313 KOG2114 Vacuolar assembly/sort 98.5 1.1E-05 2.4E-10 82.0 19.7 192 206-438 32-246 (933)
314 PF11768 DUF3312: Protein of u 98.5 0.00022 4.7E-09 70.4 28.0 113 268-385 207-331 (545)
315 PF13360 PQQ_2: PQQ-like domai 98.5 4.8E-05 1E-09 69.9 22.9 183 280-486 37-236 (238)
316 KOG2114 Vacuolar assembly/sort 98.5 1.4E-05 3E-10 81.4 19.2 199 268-481 27-244 (933)
317 KOG3617 WD40 and TPR repeat-co 98.5 5.5E-06 1.2E-10 83.7 16.2 104 206-340 24-131 (1416)
318 KOG2066 Vacuolar assembly/sort 98.4 3.1E-05 6.8E-10 78.3 20.6 181 208-436 48-234 (846)
319 KOG1832 HIV-1 Vpr-binding prot 98.4 1.4E-07 3E-12 95.3 3.9 199 206-462 1110-1314(1516)
320 PF00400 WD40: WD domain, G-be 98.4 6.8E-07 1.5E-11 56.2 5.7 38 395-433 2-39 (39)
321 KOG3617 WD40 and TPR repeat-co 98.4 1.7E-05 3.7E-10 80.4 17.6 112 143-297 19-131 (1416)
322 PF07433 DUF1513: Protein of u 98.4 0.00012 2.6E-09 67.6 20.9 205 269-487 7-254 (305)
323 PF06977 SdiA-regulated: SdiA- 98.4 0.00016 3.5E-09 65.8 21.4 204 264-477 19-247 (248)
324 PF11768 DUF3312: Protein of u 98.3 3.8E-05 8.2E-10 75.6 17.7 133 351-495 204-344 (545)
325 PRK11138 outer membrane biogen 98.3 0.00062 1.3E-08 67.7 27.0 222 209-479 160-393 (394)
326 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00051 1.1E-08 60.7 22.6 103 209-341 63-166 (354)
327 PRK11138 outer membrane biogen 98.3 0.0009 2E-08 66.6 27.0 229 208-488 119-361 (394)
328 PF07433 DUF1513: Protein of u 98.3 0.00083 1.8E-08 62.2 24.0 226 206-470 13-276 (305)
329 KOG3621 WD40 repeat-containing 98.2 0.00021 4.6E-09 71.5 19.7 142 141-319 35-180 (726)
330 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00071 1.5E-08 66.1 23.2 269 139-471 42-349 (353)
331 COG0823 TolB Periplasmic compo 98.2 0.00013 2.9E-09 72.1 17.8 203 265-481 191-401 (425)
332 KOG1920 IkappaB kinase complex 98.1 0.00032 7E-09 74.4 20.8 202 266-483 68-325 (1265)
333 PRK02888 nitrous-oxide reducta 98.1 0.00069 1.5E-08 68.6 21.7 258 212-481 69-405 (635)
334 PF06433 Me-amine-dh_H: Methyl 98.1 0.0049 1.1E-07 57.9 25.3 247 206-489 44-329 (342)
335 COG0823 TolB Periplasmic compo 98.0 0.00048 1E-08 68.2 18.1 180 290-484 174-362 (425)
336 PF13360 PQQ_2: PQQ-like domai 98.0 0.0014 2.9E-08 60.2 20.4 184 208-438 35-233 (238)
337 KOG3621 WD40 repeat-containing 98.0 7.1E-05 1.5E-09 74.8 11.7 138 206-374 42-189 (726)
338 PF08553 VID27: VID27 cytoplas 98.0 0.00076 1.6E-08 70.8 19.5 143 279-434 493-646 (794)
339 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0043 9.4E-08 55.1 19.3 149 274-436 18-166 (354)
340 PF08553 VID27: VID27 cytoplas 97.9 0.00047 1E-08 72.3 15.6 144 323-480 494-647 (794)
341 COG3391 Uncharacterized conser 97.8 0.0071 1.5E-07 59.7 23.4 212 268-487 75-290 (381)
342 PF04053 Coatomer_WDAD: Coatom 97.8 0.0075 1.6E-07 60.1 23.5 231 189-481 31-263 (443)
343 PF02897 Peptidase_S9_N: Proly 97.8 0.027 5.9E-07 56.4 27.8 254 141-442 125-411 (414)
344 PF08596 Lgl_C: Lethal giant l 97.8 0.0031 6.7E-08 61.9 19.9 213 268-489 3-299 (395)
345 cd00216 PQQ_DH Dehydrogenases 97.8 0.019 4.2E-07 58.7 26.3 233 210-488 111-432 (488)
346 PF08596 Lgl_C: Lethal giant l 97.8 0.0026 5.6E-08 62.4 19.0 252 206-469 10-325 (395)
347 PF00780 CNH: CNH domain; Int 97.8 0.012 2.6E-07 55.3 23.1 239 207-491 5-266 (275)
348 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.00099 2.1E-08 51.5 12.5 102 269-378 2-109 (111)
349 PF06433 Me-amine-dh_H: Methyl 97.7 0.034 7.5E-07 52.4 24.5 252 142-440 38-325 (342)
350 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.013 2.9E-07 57.3 22.7 90 397-489 300-407 (415)
351 PF04841 Vps16_N: Vps16, N-ter 97.7 0.019 4.1E-07 57.1 24.3 174 267-462 81-272 (410)
352 KOG2444 WD40 repeat protein [G 97.7 5.9E-05 1.3E-09 65.5 5.4 147 323-483 31-180 (238)
353 PF04841 Vps16_N: Vps16, N-ter 97.7 0.012 2.6E-07 58.6 22.3 180 290-485 62-251 (410)
354 PF03178 CPSF_A: CPSF A subuni 97.7 0.013 2.9E-07 56.4 22.2 182 279-477 42-262 (321)
355 KOG2395 Protein involved in va 97.7 0.0026 5.6E-08 62.0 16.5 145 323-481 347-501 (644)
356 PF04053 Coatomer_WDAD: Coatom 97.7 0.011 2.3E-07 59.1 21.1 216 142-435 35-262 (443)
357 PF02897 Peptidase_S9_N: Proly 97.6 0.035 7.6E-07 55.7 25.4 241 206-485 132-409 (414)
358 PF06977 SdiA-regulated: SdiA- 97.6 0.016 3.4E-07 53.0 20.3 202 140-380 22-247 (248)
359 KOG4640 Anaphase-promoting com 97.6 0.00027 5.8E-09 70.0 9.2 94 266-362 20-115 (665)
360 KOG1897 Damage-specific DNA bi 97.6 0.075 1.6E-06 56.1 26.8 300 137-493 528-869 (1096)
361 PF14583 Pectate_lyase22: Olig 97.6 0.071 1.5E-06 51.3 30.4 178 290-480 169-381 (386)
362 COG3391 Uncharacterized conser 97.6 0.021 4.5E-07 56.4 22.6 208 268-487 32-246 (381)
363 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.025 5.4E-07 55.3 23.0 200 266-479 42-312 (353)
364 PF03178 CPSF_A: CPSF A subuni 97.6 0.012 2.6E-07 56.7 20.5 161 264-432 86-262 (321)
365 PRK02888 nitrous-oxide reducta 97.6 0.0045 9.7E-08 62.9 17.7 159 274-436 200-405 (635)
366 COG3386 Gluconolactonase [Carb 97.5 0.11 2.3E-06 49.3 24.5 227 206-471 33-277 (307)
367 KOG2444 WD40 repeat protein [G 97.4 0.00032 6.8E-09 61.1 6.0 107 208-341 69-178 (238)
368 KOG2079 Vacuolar assembly/sort 97.4 0.0048 1E-07 65.1 15.3 102 208-339 98-202 (1206)
369 smart00320 WD40 WD40 repeats. 97.4 0.00064 1.4E-08 41.3 5.5 39 299-338 2-40 (40)
370 KOG2395 Protein involved in va 97.3 0.0069 1.5E-07 59.2 14.5 141 281-435 348-500 (644)
371 KOG4441 Proteins containing BT 97.2 0.024 5.2E-07 58.8 18.6 194 269-483 325-549 (571)
372 PHA02713 hypothetical protein; 97.2 0.026 5.6E-07 58.7 17.8 186 279-483 304-536 (557)
373 COG3204 Uncharacterized protei 97.1 0.21 4.5E-06 45.8 20.2 165 264-437 83-265 (316)
374 KOG4640 Anaphase-promoting com 97.1 0.0032 6.9E-08 62.7 9.5 80 404-488 20-100 (665)
375 smart00320 WD40 WD40 repeats. 97.0 0.0016 3.5E-08 39.4 5.0 38 395-433 3-40 (40)
376 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.043 9.4E-07 42.6 13.5 103 355-476 2-110 (111)
377 cd00216 PQQ_DH Dehydrogenases 97.0 0.11 2.4E-06 53.2 20.1 191 281-487 63-326 (488)
378 PF05694 SBP56: 56kDa selenium 96.9 0.14 3.1E-06 49.7 18.7 185 276-469 139-393 (461)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.81 1.7E-05 47.3 30.0 25 464-488 474-498 (527)
380 PF14583 Pectate_lyase22: Olig 96.8 0.12 2.6E-06 49.7 17.2 200 273-484 42-276 (386)
381 PHA02713 hypothetical protein; 96.8 0.1 2.2E-06 54.2 18.4 147 279-441 352-539 (557)
382 PF00780 CNH: CNH domain; Int 96.8 0.42 9.1E-06 44.8 21.1 150 279-443 7-173 (275)
383 PF05694 SBP56: 56kDa selenium 96.8 0.3 6.6E-06 47.5 19.7 117 268-385 182-344 (461)
384 KOG3630 Nuclear pore complex, 96.7 0.018 3.9E-07 61.3 12.1 98 266-365 155-256 (1405)
385 KOG2247 WD40 repeat-containing 96.7 0.00039 8.4E-09 66.9 -0.1 210 265-492 33-292 (615)
386 PF10168 Nup88: Nuclear pore c 96.7 0.32 7E-06 51.6 21.0 79 266-346 84-185 (717)
387 KOG3630 Nuclear pore complex, 96.7 0.027 5.9E-07 60.0 12.7 147 311-468 102-262 (1405)
388 KOG2079 Vacuolar assembly/sort 96.6 0.0088 1.9E-07 63.2 9.0 102 367-480 101-203 (1206)
389 PF15390 DUF4613: Domain of un 96.6 0.15 3.3E-06 51.0 16.9 155 266-437 19-188 (671)
390 KOG4441 Proteins containing BT 96.5 0.3 6.6E-06 50.8 19.7 147 279-439 381-550 (571)
391 COG3386 Gluconolactonase [Carb 96.5 0.74 1.6E-05 43.7 20.6 200 273-491 31-253 (307)
392 COG3204 Uncharacterized protei 96.3 0.21 4.6E-06 45.7 14.8 175 305-482 81-265 (316)
393 PRK13616 lipoprotein LpqB; Pro 96.3 0.34 7.5E-06 50.4 18.5 191 267-474 350-562 (591)
394 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1.7 3.6E-05 44.9 29.5 56 290-345 272-338 (527)
395 PRK13616 lipoprotein LpqB; Pro 96.2 0.36 7.8E-06 50.3 17.9 174 288-480 328-525 (591)
396 PHA03098 kelch-like protein; P 96.2 0.16 3.4E-06 52.9 15.6 187 279-483 295-514 (534)
397 PF12894 Apc4_WD40: Anaphase-p 96.2 0.023 4.9E-07 36.8 5.8 35 449-485 11-45 (47)
398 PRK10115 protease 2; Provision 96.0 2.7 5.9E-05 45.0 23.8 199 267-480 127-344 (686)
399 KOG4499 Ca2+-binding protein R 96.0 0.45 9.7E-06 42.1 14.4 154 139-328 108-272 (310)
400 PF15390 DUF4613: Domain of un 95.9 0.37 7.9E-06 48.4 15.4 160 309-483 19-189 (671)
401 PF14727 PHTB1_N: PTHB1 N-term 95.9 2 4.3E-05 42.5 25.0 152 208-384 36-205 (418)
402 KOG1897 Damage-specific DNA bi 95.9 3.2 6.8E-05 44.6 27.2 174 290-479 751-941 (1096)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 0.7 1.5E-05 45.6 17.2 52 267-319 57-118 (415)
404 PF12894 Apc4_WD40: Anaphase-p 95.8 0.028 6.1E-07 36.4 5.0 35 265-301 10-44 (47)
405 PHA03098 kelch-like protein; P 95.7 0.48 1E-05 49.3 16.7 159 279-453 343-529 (534)
406 PF07995 GSDH: Glucose / Sorbo 95.6 2.3 4.9E-05 41.1 25.8 79 395-475 244-330 (331)
407 COG3490 Uncharacterized protei 95.6 1.6 3.4E-05 40.0 16.8 207 269-487 70-317 (366)
408 TIGR03074 PQQ_membr_DH membran 95.6 4.2 9.1E-05 43.8 23.2 195 281-487 196-484 (764)
409 PF10446 DUF2457: Protein of u 95.6 0.0049 1.1E-07 58.9 1.1 18 6-26 14-31 (458)
410 PHA02790 Kelch-like protein; P 95.5 0.45 9.8E-06 48.6 15.3 183 279-483 272-473 (480)
411 PRK10115 protease 2; Provision 95.4 4.7 0.0001 43.3 29.5 250 140-439 127-398 (686)
412 KOG1916 Nuclear protein, conta 95.3 0.032 6.9E-07 58.1 5.8 169 139-345 132-328 (1283)
413 COG3490 Uncharacterized protei 95.2 1.4 3.1E-05 40.3 15.1 142 311-462 69-238 (366)
414 COG5276 Uncharacterized conser 95.2 2.6 5.6E-05 38.9 20.3 167 309-495 86-255 (370)
415 PF10647 Gmad1: Lipoprotein Lp 95.1 2.7 5.8E-05 38.8 20.5 161 268-431 25-192 (253)
416 COG5167 VID27 Protein involved 95.1 1 2.2E-05 44.5 14.8 140 281-435 482-632 (776)
417 PF10313 DUF2415: Uncharacteri 94.8 0.12 2.7E-06 32.3 5.4 35 450-484 1-37 (43)
418 PF10168 Nup88: Nuclear pore c 94.7 7.2 0.00016 41.8 22.2 36 264-299 144-181 (717)
419 PF10647 Gmad1: Lipoprotein Lp 94.7 3.6 7.8E-05 38.0 17.8 156 311-476 25-192 (253)
420 COG5167 VID27 Protein involved 94.6 0.87 1.9E-05 44.9 13.1 142 324-481 482-633 (776)
421 KOG2280 Vacuolar assembly/sort 94.4 2.6 5.6E-05 43.9 16.3 161 268-444 85-255 (829)
422 PF05096 Glu_cyclase_2: Glutam 94.4 4.1 8.8E-05 37.4 19.7 184 267-468 45-249 (264)
423 PF14727 PHTB1_N: PTHB1 N-term 94.3 6.1 0.00013 39.2 32.1 296 151-487 37-367 (418)
424 KOG1916 Nuclear protein, conta 94.3 0.0036 7.8E-08 64.7 -3.8 70 269-341 186-266 (1283)
425 KOG4499 Ca2+-binding protein R 94.2 3.8 8.2E-05 36.5 18.8 139 311-460 110-264 (310)
426 PF08728 CRT10: CRT10; InterP 94.0 3.3 7.1E-05 43.6 16.6 163 209-382 49-245 (717)
427 PF10214 Rrn6: RNA polymerase 93.7 7.5 0.00016 42.4 19.8 135 350-486 77-238 (765)
428 PF10446 DUF2457: Protein of u 93.7 0.025 5.4E-07 54.3 0.8 12 207-218 190-201 (458)
429 COG4590 ABC-type uncharacteriz 93.6 0.46 9.9E-06 46.1 8.9 169 302-483 213-389 (733)
430 PF14870 PSII_BNR: Photosynthe 93.4 4 8.6E-05 38.6 15.0 151 265-432 143-301 (302)
431 PF10313 DUF2415: Uncharacteri 93.3 0.31 6.7E-06 30.6 4.9 32 310-341 1-34 (43)
432 PF12234 Rav1p_C: RAVE protein 93.1 3.5 7.7E-05 42.9 15.2 120 311-435 31-156 (631)
433 KOG2247 WD40 repeat-containing 92.8 0.015 3.3E-07 56.4 -2.0 135 206-374 43-179 (615)
434 PF12768 Rax2: Cortical protei 92.7 8.7 0.00019 35.9 16.6 96 289-385 16-125 (281)
435 PF14870 PSII_BNR: Photosynthe 92.6 9.3 0.0002 36.2 24.9 160 306-477 141-301 (302)
436 PHA02790 Kelch-like protein; P 92.5 9.5 0.00021 39.0 17.6 58 279-342 363-425 (480)
437 PF12234 Rav1p_C: RAVE protein 92.4 4.6 9.9E-05 42.1 14.8 100 367-479 43-155 (631)
438 KOG4460 Nuclear pore complex, 92.4 4.4 9.4E-05 40.4 13.7 82 405-488 104-206 (741)
439 PF08728 CRT10: CRT10; InterP 92.4 6.9 0.00015 41.3 16.1 105 323-434 115-245 (717)
440 TIGR03118 PEPCTERM_chp_1 conse 92.1 10 0.00022 35.4 21.8 219 268-490 24-289 (336)
441 PF05096 Glu_cyclase_2: Glutam 92.1 9.7 0.00021 35.0 20.7 185 190-424 44-250 (264)
442 PF02333 Phytase: Phytase; In 92.0 13 0.00028 36.3 21.7 198 279-483 68-293 (381)
443 PLN02153 epithiospecifier prot 92.0 7.3 0.00016 37.8 15.4 54 427-483 217-287 (341)
444 KOG2280 Vacuolar assembly/sort 91.9 7.8 0.00017 40.5 15.4 181 286-486 61-252 (829)
445 PF03022 MRJP: Major royal jel 91.8 12 0.00025 35.4 20.3 176 290-468 35-253 (287)
446 PLN00033 photosystem II stabil 91.7 15 0.00032 36.4 18.0 153 312-477 241-396 (398)
447 COG5276 Uncharacterized conser 91.6 11 0.00025 34.8 22.7 153 266-438 86-244 (370)
448 TIGR03548 mutarot_permut cycli 91.1 15 0.00032 35.3 17.1 23 418-440 173-199 (323)
449 TIGR02604 Piru_Ver_Nterm putat 91.1 11 0.00025 36.9 15.8 149 310-469 14-202 (367)
450 PF07569 Hira: TUP1-like enhan 90.7 3.6 7.7E-05 37.0 10.8 86 349-439 9-99 (219)
451 PLN02153 epithiospecifier prot 90.6 17 0.00037 35.2 20.2 22 279-300 86-112 (341)
452 PLN02193 nitrile-specifier pro 90.3 9.7 0.00021 38.8 14.9 64 418-483 330-413 (470)
453 PF14781 BBS2_N: Ciliary BBSom 90.2 8.6 0.00019 31.1 12.5 110 272-385 4-127 (136)
454 PRK14131 N-acetylneuraminic ac 90.2 20 0.00043 35.3 19.5 50 429-481 314-369 (376)
455 TIGR03547 muta_rot_YjhT mutatr 90.1 19 0.00042 34.9 18.7 41 428-471 291-331 (346)
456 KOG1900 Nuclear pore complex, 89.5 13 0.00028 41.5 15.3 154 328-486 95-278 (1311)
457 PF11715 Nup160: Nucleoporin N 89.4 2 4.3E-05 44.9 9.3 96 207-306 156-257 (547)
458 PF07569 Hira: TUP1-like enhan 89.0 2.5 5.5E-05 38.0 8.5 78 207-299 20-97 (219)
459 PF14781 BBS2_N: Ciliary BBSom 88.9 11 0.00024 30.5 13.2 120 357-485 3-130 (136)
460 PF11635 Med16: Mediator compl 88.9 25 0.00053 38.3 17.2 69 265-335 258-345 (753)
461 TIGR03548 mutarot_permut cycli 88.9 13 0.00029 35.6 14.1 104 279-385 73-196 (323)
462 KOG2377 Uncharacterized conser 88.9 12 0.00027 36.7 13.1 145 328-482 39-187 (657)
463 PF12657 TFIIIC_delta: Transcr 88.4 3.7 8.1E-05 35.3 8.9 32 267-298 86-122 (173)
464 TIGR03074 PQQ_membr_DH membran 88.2 43 0.00092 36.4 22.1 64 280-345 261-349 (764)
465 PF07676 PD40: WD40-like Beta 88.2 2.6 5.6E-05 25.7 5.8 31 447-477 6-38 (39)
466 PLN02193 nitrile-specifier pro 87.7 35 0.00076 34.8 19.1 102 279-385 229-353 (470)
467 smart00036 CNH Domain found in 87.6 26 0.00057 33.3 24.6 242 209-489 13-279 (302)
468 PF10214 Rrn6: RNA polymerase 87.5 48 0.001 36.2 25.1 122 352-481 145-277 (765)
469 PF04931 DNA_pol_phi: DNA poly 87.5 0.29 6.2E-06 53.3 1.7 15 21-36 619-633 (784)
470 PF10395 Utp8: Utp8 family; I 87.2 43 0.00092 35.3 23.1 168 308-489 128-314 (670)
471 KOG2377 Uncharacterized conser 86.8 34 0.00075 33.8 19.9 115 265-383 65-185 (657)
472 KOG1896 mRNA cleavage and poly 86.1 37 0.00081 37.8 16.0 115 264-383 1095-1213(1366)
473 PF10433 MMS1_N: Mono-function 85.7 47 0.001 34.3 25.7 108 363-478 220-340 (504)
474 PF14761 HPS3_N: Hermansky-Pud 85.6 25 0.00055 31.1 13.3 102 280-385 29-165 (215)
475 TIGR02604 Piru_Ver_Nterm putat 85.5 39 0.00084 33.2 22.6 59 267-329 72-142 (367)
476 KOG1983 Tomosyn and related SN 85.4 18 0.00039 40.5 14.0 25 413-438 243-267 (993)
477 KOG3616 Selective LIM binding 85.3 22 0.00047 37.3 13.2 35 138-175 13-47 (1636)
478 KOG1983 Tomosyn and related SN 85.1 18 0.00039 40.5 13.8 30 267-297 36-65 (993)
479 COG4257 Vgb Streptogramin lyas 85.1 31 0.00068 31.8 16.0 198 267-481 62-263 (353)
480 KOG1900 Nuclear pore complex, 84.5 25 0.00054 39.4 14.1 148 286-436 96-273 (1311)
481 PF02333 Phytase: Phytase; In 84.2 44 0.00095 32.7 21.9 197 206-437 65-292 (381)
482 TIGR02276 beta_rpt_yvtn 40-res 84.2 4.8 0.0001 24.8 5.6 32 276-307 1-32 (42)
483 PF12657 TFIIIC_delta: Transcr 84.1 8.7 0.00019 33.1 8.9 32 353-384 86-122 (173)
484 KOG3616 Selective LIM binding 83.2 20 0.00044 37.5 12.0 69 309-382 14-82 (1636)
485 PF07995 GSDH: Glucose / Sorbo 82.8 47 0.001 32.0 18.9 71 353-430 253-330 (331)
486 TIGR03118 PEPCTERM_chp_1 conse 82.6 43 0.00094 31.4 22.6 225 203-459 28-307 (336)
487 KOG2063 Vacuolar assembly/sort 82.2 45 0.00098 36.4 14.8 76 208-301 25-100 (877)
488 KOG2727 Rab3 GTPase-activating 82.1 5.9 0.00013 42.3 8.0 77 406-487 323-413 (1244)
489 COG4880 Secreted protein conta 81.9 55 0.0012 32.2 15.7 182 291-486 408-598 (603)
490 PF14779 BBS1: Ciliary BBSome 81.6 43 0.00093 30.7 17.3 73 404-477 176-255 (257)
491 PRK14131 N-acetylneuraminic ac 80.2 33 0.00071 33.8 12.6 17 282-298 43-59 (376)
492 COG4257 Vgb Streptogramin lyas 79.8 51 0.0011 30.5 19.3 226 203-480 67-305 (353)
493 COG3823 Glutamine cyclotransfe 79.6 43 0.00094 29.5 14.8 103 279-385 56-160 (262)
494 PF08801 Nucleoporin_N: Nup133 79.5 34 0.00073 34.3 12.6 31 450-481 190-220 (422)
495 KOG4460 Nuclear pore complex, 79.1 19 0.00041 36.2 9.9 97 265-385 102-200 (741)
496 PF14761 HPS3_N: Hermansky-Pud 78.2 49 0.0011 29.4 11.7 106 367-484 30-167 (215)
497 PF07676 PD40: WD40-like Beta 76.8 12 0.00026 22.7 5.4 32 401-432 5-38 (39)
498 PF11715 Nup160: Nucleoporin N 76.0 11 0.00023 39.4 8.2 38 450-488 215-256 (547)
499 smart00036 CNH Domain found in 75.7 75 0.0016 30.2 16.8 111 323-434 14-130 (302)
500 COG4590 ABC-type uncharacteriz 75.3 55 0.0012 32.4 11.7 162 262-439 216-390 (733)
No 1
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-83 Score=580.48 Aligned_cols=458 Identities=44% Similarity=0.781 Sum_probs=390.7
Q ss_pred CcceeeeccCCCCCcCCcccCCCCHHHHHHHHhccccccccccCCCCCchhhhhhhhhhhccchhHHHHHHHhhcCCCcc
Q 010748 1 MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQSDDASQAVAVANALGKTSK 80 (502)
Q Consensus 1 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (502)
||||++|||||+||++|+|++| +++|++|||. +++ +..+ +++.+ .+.++ +++.+++..+..-
T Consensus 3 ~Vsa~swvprG~ake~Pdk~~l-~~~e~~rii~------~e~-~~~~-~ee~~---~e~~~------~~~~a~~~~~~~l 64 (463)
T KOG0270|consen 3 MVSALSWVPRGVAKEFPDKIEL-DDEELKRIIQ------LEG-AIAD-DEESE---SESDD------AEESAEEQGKGML 64 (463)
T ss_pred eeeeeeeeeccchhhCCccccC-CHHHHHHHhh------hcc-cccc-ccccc---cccch------hhhhhhhhccccc
Confidence 8999999999999999999999 9999999875 111 2122 11110 00000 1111122222211
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCc-ccccccCcccceeccCCCCCCcccCCCC-CCccccccccccCCCceEEEEE
Q 010748 81 SKNSGTKFDDITDGLKELDMDHYDDEDD-GVEIFGKGLGDLYYASNQMDPYLKDKDD-EDSEDLEDMTINPNDAVIVCAR 158 (502)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~e~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~ 158 (502)
+...+.+.+..+..|+||+|++||+|.+ .+.+|.++.++.+|.+++.|||++++++ +++++...+.+.|++++|+||.
T Consensus 65 ~~~~d~d~~~~~~~l~e~d~d~ydee~~g~~~~f~s~~g~~~y~sne~DPYvt~~d~e~deee~de~~V~psDnlIl~ar 144 (463)
T KOG0270|consen 65 DSSGDVDDDLKEYELKEYDMDEYDEEADGEIELFSSLLGIAVYPSNEKDPYVTIPDDEDDEEEKDEEQVKPSDNLILCAR 144 (463)
T ss_pred ccccccCccchhhhhhhhccccchhcccccccccccccCceeccCCCCCCccccCCcccchhhcccceeccCCcEEEEee
Confidence 1111234444556899999999999975 4889999999999999999999999765 4556689999999999999999
Q ss_pred ecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceec
Q 010748 159 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 238 (502)
Q Consensus 159 ~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l 238 (502)
.++++++|+||+|+.... ++|+||+.++++||+|++|+++.......|||+|+|++++.|.|||++..+.+.|..+|
T Consensus 145 ~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L 221 (463)
T KOG0270|consen 145 NEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTL 221 (463)
T ss_pred ccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceee
Confidence 999999999999999887 99999999999999999999995544556999999999999999999999999999999
Q ss_pred CCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEc
Q 010748 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN 318 (502)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~ 318 (502)
|.....+++ +..+......+|+++|.+|+|+...+++|||||.|.+|++||+.++++..++..|..+|+++.|+
T Consensus 222 Gs~~sk~~~------k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 222 GSKASKKKK------KKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH 295 (463)
T ss_pred chhhhhhhh------hhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec
Confidence 965543222 22224445568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce
Q 010748 319 HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 398 (502)
Q Consensus 319 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 398 (502)
|..+.+|++|+.|++|.+.|+|........|...+.|..++|+|+..+.|++++.||+|+.+|+|+. .++++
T Consensus 296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vw 367 (463)
T KOG0270|consen 296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVW 367 (463)
T ss_pred CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCcee
Confidence 9999999999999999999999888888899999999999999999999999999999999999998 68999
Q ss_pred EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
++.+|..+|+++++++..+++|+|++.|+.|++|++....+..+.......+...|+++.|+-.++||.||..+.++|||
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 99999999999999999999999999999999999988877677777766778899999999999999999999999999
Q ss_pred CCCCccccccccCCC
Q 010748 479 TLSDAGISNRFSKYS 493 (502)
Q Consensus 479 ~~~~~~~~~~~~~~~ 493 (502)
+.+...+++.|+.+.
T Consensus 448 ~~~~~~V~kaF~~~~ 462 (463)
T KOG0270|consen 448 IFTNSPVRKAFGSRL 462 (463)
T ss_pred cccChhHHHhhcccc
Confidence 999999999998764
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-46 Score=335.62 Aligned_cols=301 Identities=26% Similarity=0.379 Sum_probs=262.6
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
..|.+.|.+++|+|++..||+|+.+. ++++|..++... ......|..- .+|++| +|||+.||+|
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~---TvR~WD~~TeTp-~~t~KgH~~W-----Vlcvaw-------sPDgk~iASG 175 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDT---TVRLWDLDTETP-LFTCKGHKNW-----VLCVAW-------SPDGKKIASG 175 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCc---eEEeeccCCCCc-ceeecCCccE-----EEEEEE-------CCCcchhhcc
Confidence 57999999999999999999999775 778888887764 1122234333 379999 8999999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC----CcEEEEEecCCcE
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----RNILASASADKQV 291 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~sgs~dg~v 291 (502)
+.+|+|++||..++.+.. ..+.+|+..|++|+|.|-+ ..+||++|.||+|
T Consensus 176 ~~dg~I~lwdpktg~~~g--------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v 229 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIG--------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV 229 (480)
T ss_pred ccCCeEEEecCCCCCccc--------------------------ccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence 999999999987654432 3566999999999998742 3489999999999
Q ss_pred EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC----------
Q 010748 292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD---------- 361 (502)
Q Consensus 292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~---------- 361 (502)
+|||+..++++..+.+|+.+|+|++|--+| ++++|+.|++|++|+...+.....+.+|...|+.++.+
T Consensus 230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred EEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 999999999999999999999999998776 99999999999999999988888888999999988876
Q ss_pred -CCCC------------------------CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748 362 -PHAE------------------------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 362 -~~~~------------------------~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
|.+. ..+++|+.|.++.+|+.... .+++..+.+|..-|+.+.|+|++
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--------kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--------KKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--------ccchhhhhchhhheeeEEECCCc
Confidence 2222 25999999999999998776 47889999999999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748 417 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
+++|+++.|+.|++|+.++++ .+.++.+|.++|+.++|+.|.+ ||++|+.|.+++||++++.+....+.+|.
T Consensus 380 -r~IASaSFDkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 380 -RYIASASFDKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred -cEEEEeecccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCC
Confidence 999999999999999999998 6888999999999999999999 79999999999999999998887776654
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-43 Score=318.11 Aligned_cols=286 Identities=20% Similarity=0.297 Sum_probs=252.7
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
..+..|..+.|+++++.||+|+.+| .++||..... .....++.|...+ .++.|.+.. ++..||+|+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG---~~kvW~~~~~-~~~~~l~gH~~~v-----~~~~fhP~~-----~~~~lat~s 238 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSG---LVKVWSVPQC-NLLQTLRGHTSRV-----GAAVFHPVD-----SDLNLATAS 238 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCC---ceeEeecCCc-ceeEEEeccccce-----eeEEEccCC-----Cccceeeec
Confidence 3457899999999999999999998 5688877655 2233555665444 577774220 377899999
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
.||++++|+++.. .+...+.+|...|..++|+|+ +.+|+|+|.|.+-++||+
T Consensus 239 ~Dgtvklw~~~~e---------------------------~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE---------------------------TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDL 290 (459)
T ss_pred cCCceeeeccCCC---------------------------cchhhhhcchhhheeeeecCC-Cceeeecccccchhhccc
Confidence 9999999999853 233356689999999999999 569999999999999999
Q ss_pred CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~ 376 (502)
.++..+....+|+..|.+++|+|+| .+++||+.|..-+|||+|+++++..+.+|..+|.+|.|+|+| +.+++|+.|++
T Consensus 291 ~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt 368 (459)
T KOG0272|consen 291 ETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNT 368 (459)
T ss_pred ccchhhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCc
Confidence 9999988889999999999999999 999999999999999999999999899999999999999976 58999999999
Q ss_pred EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
++|||+|.. ..+..+.+|..-|+.+.|+|..+.+|+|++.|++++||...+.+ ++.++.+|.+.|.++.
T Consensus 369 ~kVWDLR~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 369 CKVWDLRMR---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVISLD 437 (459)
T ss_pred EEEeeeccc---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEEEE
Confidence 999999986 67999999999999999999766999999999999999999888 7889999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEE
Q 010748 457 FSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 457 ~spd~~~ll~sg~~dg~i~vwd 478 (502)
.+|++.+ ++|++.|.++++|.
T Consensus 438 is~d~~~-i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 ISPDSQA-IATSSFDRTIKLWR 458 (459)
T ss_pred eccCCce-EEEeccCceeeecc
Confidence 9999995 99999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-41 Score=304.33 Aligned_cols=290 Identities=23% Similarity=0.334 Sum_probs=249.4
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
..|...|.+++|+|||..||+|+.++ .+.+|.-..+......|..|...+ .+++|-+... .|..++||++
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg---~I~lwdpktg~~~g~~l~gH~K~I-----t~Lawep~hl--~p~~r~las~ 223 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDG---SIRLWDPKTGQQIGRALRGHKKWI-----TALAWEPLHL--VPPCRRLASS 223 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCC---eEEEecCCCCCcccccccCcccce-----eEEeeccccc--CCCccceecc
Confidence 57999999999999999999999998 344444434443333455555444 6899976644 5778899999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+.||.|+|||+..+ .....+.+|+.+|+|+.|-.+ .+|++||.|++|++|+
T Consensus 224 skDg~vrIWd~~~~---------------------------~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLG---------------------------TCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWR 274 (480)
T ss_pred cCCCCEEEEEccCc---------------------------eEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEE
Confidence 99999999999753 344466799999999999765 4999999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEc-----------CCC------------------------CcEEEEEeCCCcEEEEecC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWN-----------HHS------------------------PQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~-----------~~~------------------------~~~l~s~s~dg~i~iwd~~ 340 (502)
...|++.+.+++|...|+.|+.+ |.+ +..|++|+.|.++.+|+..
T Consensus 275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 99999999999999999999887 222 2359999999999999976
Q ss_pred CCC-CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748 341 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 341 ~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 419 (502)
..+ ++....+|..-|+.+.|+|++. ++++++-|..|++|+.+++ +.+.++.+|-.+|..++|+.+. ++
T Consensus 355 ~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaDs-RL 423 (480)
T KOG0271|consen 355 KSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSADS-RL 423 (480)
T ss_pred ccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccCc-cE
Confidence 554 5566778999999999999875 8999999999999999998 8899999999999999999997 99
Q ss_pred EEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
|++|+.|.++++|++++.+ +...+.+|...|+++.|+|||. .+++|+.|..+++|.
T Consensus 424 lVS~SkDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEcCCCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 9999999999999999987 6788999999999999999999 699999999999994
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.7e-40 Score=285.95 Aligned_cols=292 Identities=19% Similarity=0.325 Sum_probs=246.8
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
..|...|.++.|+++.+.|++++.++ ++.+|+.-.. ....++|+...|+. ..+|+|.|+++|.|
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~Tt----------nK~haipl~s~WVM-tCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTT----------NKVHAIPLPSSWVM-TCAYSPSGNFVACG 115 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCC-----eEEEEEcccc----------cceeEEecCceeEE-EEEECCCCCeEEec
Confidence 35889999999999999999999998 5555553332 11234456667753 35669999999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+.|....||++.+.+.- ........+.+|++-+.|+.|.++ ..|+++|.|.++.+||
T Consensus 116 GLdN~Csiy~ls~~d~~---------------------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAE---------------------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWD 172 (343)
T ss_pred CcCceeEEEeccccccc---------------------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEE
Confidence 99999999999753211 112334457799999999999987 3788999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg 375 (502)
+++++.+..|.+|.+.|.+|.++|..++.|++|+.|+..++||+|.+...+.+.+|.+.|++|+|.|+|. -|++|++|+
T Consensus 173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~ 251 (343)
T KOG0286|consen 173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDA 251 (343)
T ss_pred cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCc
Confidence 9999999999999999999999995559999999999999999999999998999999999999999876 799999999
Q ss_pred cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 455 (502)
+.++||+|.... ..++.-..-..+|++++||..| ++|++|..|.++.+||.-.++ .+..+.+|.+.|.|+
T Consensus 252 tcRlyDlRaD~~-------~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 252 TCRLYDLRADQE-------LAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCL 321 (343)
T ss_pred eeEEEeecCCcE-------EeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEE
Confidence 999999998731 2233333445789999999998 999999999999999998877 566778999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEE
Q 010748 456 AFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 456 ~~spd~~~ll~sg~~dg~i~vwd 478 (502)
..+|||. .|++|+.|..++||.
T Consensus 322 ~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCc-EEEecchhHheeecC
Confidence 9999998 699999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-41 Score=308.17 Aligned_cols=248 Identities=23% Similarity=0.320 Sum_probs=231.0
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s 284 (502)
+.+++.||||+.+|.++||+..... ....+.+|+..|.++.|+|. ...-|||
T Consensus 184 S~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 184 SRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred ecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccccceeeEEEccCCCccceee
Confidence 7899999999999999999987542 23356799999999999998 4668999
Q ss_pred EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 364 (502)
|+.||+|++|++.+..++..+.+|...|..++|+|+| ++|+|+++|.+-++||++++.......+|...|.+++|+|+|
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred eccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence 9999999999999999999999999999999999999 999999999999999999999888889999999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. ++++|+.|..-++||+|++ .++..+.+|..+|.+|+|+|+| ..|||||.|++++|||++..+ .+++
T Consensus 316 S-L~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~ly~ 382 (459)
T KOG0272|consen 316 S-LAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--ELYT 382 (459)
T ss_pred c-eeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--ccee
Confidence 7 8999999999999999998 8899999999999999999998 999999999999999999887 5889
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+.+|..-|+.+.|+|...+.|+|++.|++++||...+..+++.+.+|..+
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k 432 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK 432 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc
Confidence 99999999999999966567999999999999999999999999888654
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.7e-39 Score=289.69 Aligned_cols=284 Identities=21% Similarity=0.396 Sum_probs=242.3
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d 218 (502)
.-.|..+.|.|+|+.|++|+..|++ .+|.-..-. .+ .+..-|+.++ .++.| +++|.++++|..+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEF---tLWNg~~fn-FE-tilQaHDs~V----r~m~w-------s~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEF---TLWNGTSFN-FE-TILQAHDSPV----RTMKW-------SHNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccE---EEecCceee-HH-HHhhhhcccc----eeEEE-------ccCCCEEEEcCCC
Confidence 4578999999999999999999854 455331110 01 2223444443 68888 7899999999999
Q ss_pred CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~ 298 (502)
|.|++|+.+-. ..+.....|..+|++++|+|+ ...+++||.||+|+|||...
T Consensus 160 G~iKyWqpnmn---------------------------nVk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 160 GMIKYWQPNMN---------------------------NVKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred ceEEecccchh---------------------------hhHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccC
Confidence 99999998621 111222346699999999998 56999999999999999999
Q ss_pred CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~ 378 (502)
.+.-..+.+|.-.|.|+.|||.. .++++|+.|..|++||.+++.++..+..|...|..+.|+|++ ++|++++.|..++
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~k 289 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCK 289 (464)
T ss_pred CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEE
Confidence 99888999999999999999998 899999999999999999999999899999999999999987 6999999999999
Q ss_pred EEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
+||+|+. +-++.+.+|...|+++.|+|-.+.+|.+|+.||.|..|.+....+. ...-.+|.+.|++++|+
T Consensus 290 v~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-~~i~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 290 VFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-GEIPPAHDGEIWSLAYH 359 (464)
T ss_pred EEehhHh---------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc-cCCCcccccceeeeecc
Confidence 9999976 7789999999999999999998899999999999999999865543 33446799999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEC
Q 010748 459 EDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 459 pd~~~ll~sg~~dg~i~vwd~ 479 (502)
|-|. +|++|+.|.++++|.-
T Consensus 360 PlGh-il~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 360 PLGH-ILATGSNDRTVRFWTR 379 (464)
T ss_pred ccce-eEeecCCCcceeeecc
Confidence 9997 8999999999999975
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-37 Score=283.27 Aligned_cols=298 Identities=23% Similarity=0.406 Sum_probs=254.4
Q ss_pred CccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCCC--CCCe------eeeeccccCCCcceeeeecCCCCCCCC
Q 010748 138 DSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGG--DPNL------YVHHHIIIPAFPLCMAWLDCPLKDREK 208 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~--~~~l------~~~~~~~~~~~~~~~~~~~~~~~~s~~ 208 (502)
|+.+|.+.+|+|-.. +|++|+.+- ..++|.+...... .+.. +..+..+...-.+|++| +.+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s---~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W-------n~~ 246 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDS---TARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW-------NND 246 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCcc---ceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe-------cCC
Confidence 888999999999988 777776553 5678877652211 1111 12233333444688999 688
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
|++||+|+.+|.++||+.+ ......+..|+++|.+|.|+.. +++|++++.|
T Consensus 247 G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD 297 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPIFSLKWNKK-GTYILSGGVD 297 (524)
T ss_pred CCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCceEEEEEcCC-CCEEEeccCC
Confidence 9999999999999999987 3344456689999999999999 6799999999
Q ss_pred CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 368 (502)
+++.+||..++.+...+..|+.+-..+.|-.+. -|++++.|+.|+++.+....+...+.+|.++|.++.|+|.+. +|
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LL 374 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LL 374 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eE
Confidence 999999999999999999999987889997764 799999999999999999888888889999999999999876 89
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC--------CEEEEEeCCCcEEEEECCCCCee
Q 010748 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP--------NLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--------~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
++++.|++++||..... .....+.+|...|..+.|+|.++ ..+++++.|++|++||+..+.
T Consensus 375 aS~SdD~TlkiWs~~~~---------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-- 443 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQS---------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-- 443 (524)
T ss_pred EEecCCCeeEeeecCCC---------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc--
Confidence 99999999999998876 77888999999999999999763 579999999999999999988
Q ss_pred EEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 441 ~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
++..+..|..+|.+++|+|+|+| +|+|+.||.|.+|++.+++.++..-
T Consensus 444 ~i~~f~kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 444 PIHTLMKHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred eeEeeccCCCceEEEEecCCCcE-EEecCCCCeeEeccccchheeEeec
Confidence 67888899999999999999996 9999999999999999998876654
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-37 Score=303.33 Aligned_cols=264 Identities=22% Similarity=0.423 Sum_probs=223.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCC--CcCcceecCCcchh--hhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVID--EVQPHVILGGIDEE--KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~--~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
++++.+||.|..|..|++|.+.... .+....-+...... .................+.||.++|..++|+|+ +++
T Consensus 387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd-~rf 465 (707)
T KOG0263|consen 387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD-RRF 465 (707)
T ss_pred cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-ccc
Confidence 8999999999999999999997421 11110000000000 000001111223334457899999999999999 779
Q ss_pred EEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 361 (502)
Q Consensus 282 l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~ 361 (502)
|++||.|++|++|.+.+..++..+++|..+|+.+.|+|.| .+|+|++.|++.++|......+.....+|-+.|.|+.|+
T Consensus 466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FH 544 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH 544 (707)
T ss_pred eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEEEC
Confidence 9999999999999999999999999999999999999999 999999999999999999888888888999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
|+. +++++|+.|.+|++||+.++ ..++.+.+|.++|++++|+|+| .+|++|+.||.|++||+.++. .
T Consensus 545 PNs-~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~--~ 611 (707)
T KOG0263|consen 545 PNS-NYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS--L 611 (707)
T ss_pred Ccc-cccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc--c
Confidence 975 58999999999999999998 7789999999999999999998 999999999999999999988 6
Q ss_pred EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
+..+.+|.+.|.++.|+.+|. +||+||.|.+|++||+..-...
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred hhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence 778889999999999999999 7999999999999999764443
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=258.28 Aligned_cols=290 Identities=17% Similarity=0.244 Sum_probs=236.0
Q ss_pred eEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCc
Q 010748 153 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEV 232 (502)
Q Consensus 153 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~ 232 (502)
+|++++.+. ++++|....+.. ..-..|.+..+ ..++- .|++++||+++. ..||+||+++...
T Consensus 12 iLvsA~YDh---TIRfWqa~tG~C--~rTiqh~dsqV----NrLei-------Tpdk~~LAaa~~-qhvRlyD~~S~np- 73 (311)
T KOG0315|consen 12 ILVSAGYDH---TIRFWQALTGIC--SRTIQHPDSQV----NRLEI-------TPDKKDLAAAGN-QHVRLYDLNSNNP- 73 (311)
T ss_pred EEEeccCcc---eeeeeehhcCeE--EEEEecCccce----eeEEE-------cCCcchhhhccC-CeeEEEEccCCCC-
Confidence 567777665 556655554432 12223444333 22222 789999999975 7999999986443
Q ss_pred CcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCe
Q 010748 233 QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV 312 (502)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v 312 (502)
.+...+.+|+..|+++.|..+ +..+++||.||+++|||++...+.+.++ |.++|
T Consensus 74 ------------------------~Pv~t~e~h~kNVtaVgF~~d-grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spV 127 (311)
T KOG0315|consen 74 ------------------------NPVATFEGHTKNVTAVGFQCD-GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPV 127 (311)
T ss_pred ------------------------CceeEEeccCCceEEEEEeec-CeEEEecCCCceEEEEeccCcccchhcc-CCCCc
Confidence 244566789999999999999 5699999999999999999988877776 77999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748 313 QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391 (502)
Q Consensus 313 ~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~ 391 (502)
+++..+|.. .-|++|..+|.|++||++...+..... .....|.++...|+|. .++++...|..++|++-+.....
T Consensus 128 n~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s-- 203 (311)
T KOG0315|consen 128 NTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTAS-- 203 (311)
T ss_pred ceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccc--
Confidence 999999998 789999999999999999876655433 2346799999999887 78889999999999998743211
Q ss_pred CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748 392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 392 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d 471 (502)
...++..+++|.+.+..+.+||++ ++||++|.|.+++||+..+. ......+.+|...++.++||.++.| |++|+.|
T Consensus 204 -~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd 279 (311)
T KOG0315|consen 204 -ELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY-LVTASSD 279 (311)
T ss_pred -cceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE-EEecCCC
Confidence 247788899999999999999998 99999999999999999988 4567788899999999999999997 8999999
Q ss_pred CcEEEEECCCCccccccccCCCC
Q 010748 472 GKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 472 g~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+.+++|++..++.++..-+|+..
T Consensus 280 ~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 280 HTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred CceeecccccCceeeecCCcccc
Confidence 99999999999999888777654
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-35 Score=255.51 Aligned_cols=253 Identities=22% Similarity=0.343 Sum_probs=228.0
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
+|+.| ++++++|++++.||.+.|||.-+.+.+..+ .--...|+.++
T Consensus 59 ~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~hai---------------------------pl~s~WVMtCA 104 (343)
T KOG0286|consen 59 YAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAI---------------------------PLPSSWVMTCA 104 (343)
T ss_pred eeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEE---------------------------ecCceeEEEEE
Confidence 68888 799999999999999999998764433322 23457899999
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCC------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 347 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 347 (502)
|+|. ++++|+|+.|+...||++.+. +..+.+.+|++.+.|+.|-+++ .|+|++.|.++.+||+.+++....
T Consensus 105 ~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 105 YSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred ECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEE
Confidence 9999 679999999999999999865 4567789999999999999865 799999999999999999999888
Q ss_pred eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
+.+|.+.|.++.+.|...+.|++|+-|+..++||+|.+ .+++++.+|...|++++|.|+| .-++||+.|+
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G-~afatGSDD~ 251 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG-DAFATGSDDA 251 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-CeeeecCCCc
Confidence 88999999999999976779999999999999999997 8899999999999999999998 9999999999
Q ss_pred cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+.++||++..+...++.......+|++++||..|+ +|.+|..|.++.|||...++.+..+.+|...
T Consensus 252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred eeEEEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 99999999998778888777788999999999999 5777899999999999999999888888664
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-34 Score=250.28 Aligned_cols=288 Identities=19% Similarity=0.333 Sum_probs=221.9
Q ss_pred CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCC---CC-CeeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010748 136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGG---DP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~---~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 210 (502)
+.|.+.|..+++.+.+ ..|+.++.+. .+-+|.+...... .. .+..|. ..+. .+. .+++|+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk---~ii~W~L~~dd~~~G~~~r~~~GHs-H~v~----dv~-------~s~dg~ 76 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDK---TIIVWKLTSDDIKYGVPVRRLTGHS-HFVS----DVV-------LSSDGN 76 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccce---EEEEEEeccCccccCceeeeeeccc-eEec----ceE-------EccCCc
Confidence 4588999999999985 4666676665 5666766654321 11 223332 2221 111 178999
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
+.++++.|+++++||+.++. ....|.+|+..|++++|+++ ...++|||.|.+
T Consensus 77 ~alS~swD~~lrlWDl~~g~---------------------------~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkT 128 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGE---------------------------STRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKT 128 (315)
T ss_pred eEEeccccceEEEEEecCCc---------------------------EEEEEEecCCceEEEEecCC-CceeecCCCcce
Confidence 99999999999999998642 33356699999999999999 458999999999
Q ss_pred EEEEeCCCCeeeEeeccC--CCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748 291 VKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 367 (502)
|++|++.. .|..++..+ .+.|+|++|+|.. ..+|++++.|++|++||+++.+......+|.+.++.+.++|+|. +
T Consensus 129 iklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-l 206 (315)
T KOG0279|consen 129 IKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-L 206 (315)
T ss_pred eeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-E
Confidence 99999764 455555433 7899999999984 47999999999999999999998888889999999999999987 8
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-
Q 010748 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN- 446 (502)
Q Consensus 368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~- 446 (502)
.++|+.||.+.+||++.. +.++.+ .|...|.+++|+|+. +.+++..+..|+|||+.++....-....
T Consensus 207 casGgkdg~~~LwdL~~~---------k~lysl-~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEG---------KNLYSL-EAFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EecCCCCceEEEEEccCC---------ceeEec-cCCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccc
Confidence 999999999999999987 555554 478899999999964 4444555666999999987632211111
Q ss_pred -C-----CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 447 -P-----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 447 -~-----~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+ ..-...+++|+++|.. |.+|-.|+.|++|.+..
T Consensus 275 ~g~s~~~~~~~clslaws~dG~t-Lf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQT-LFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccccccCCcEEEEEEEcCCCcE-EEeeecCCcEEEEEeec
Confidence 1 1223578899999994 88899999999998753
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-35 Score=262.82 Aligned_cols=287 Identities=22% Similarity=0.393 Sum_probs=252.8
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
..|...|..+.|+|+-.++++++.+. ++++|.+.+++. ...|..|.+.. ..+. |+..|++||++
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~---tikv~D~~tg~~-e~~LrGHt~sv-----~di~-------~~a~Gk~l~tc 168 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDA---TIKVFDTETGEL-ERSLRGHTDSV-----FDIS-------FDASGKYLATC 168 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCc---eEEEEEccchhh-hhhhhccccce-----eEEE-------EecCccEEEec
Confidence 45888999999999999999998665 678887777664 44566666542 2333 36779999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+.|-.+.+||++.. ......+.+|...|.++.|-|. +.+++|++.|.+|+.|+
T Consensus 169 SsDl~~~LWd~~~~--------------------------~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTF--------------------------FRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWE 221 (406)
T ss_pred CCccchhheeHHHH--------------------------HHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEe
Confidence 99999999999741 2233345689999999999999 57999999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC-----------
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA----------- 364 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~----------- 364 (502)
+.++-++.+|.+|+..|..++.+.+| .++++++.|.+|++|-+.+.++......|..+|.|++|.|..
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 99999999999999999999999999 999999999999999999998888888999999999998732
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748 365 ---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 365 ---~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
..++++++.|++|++||+.++ .+++++.+|...|..++|+|.| ++|+++..|+++++||+++.+ |
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~--c 368 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTG---------MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ--C 368 (406)
T ss_pred CCCccEEEeecccceEEEEeccCC---------eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce--e
Confidence 248899999999999999997 8999999999999999999988 999999999999999999988 8
Q ss_pred EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
......|...|+++.|+.+.+| +++|+-|..+++|..
T Consensus 369 mk~~~ah~hfvt~lDfh~~~p~-VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 369 MKTLEAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWEC 405 (406)
T ss_pred eeccCCCcceeEEEecCCCCce-EEeccccceeeeeec
Confidence 8889999999999999999996 999999999999964
No 14
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=252.93 Aligned_cols=293 Identities=23% Similarity=0.331 Sum_probs=239.3
Q ss_pred ccccccCC-CceEEEE--EecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCC-CCEEEEecCC
Q 010748 143 EDMTINPN-DAVIVCA--RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSME 218 (502)
Q Consensus 143 ~~~~~~p~-~~~l~~~--~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~la~g~~d 218 (502)
.+++|||- .+.||+| ..-|-.+.-++++.+..... .+..........--+.++| +++ .+.+++++.|
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~--gi~e~~s~d~~D~LfdV~W-------se~~e~~~~~a~GD 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK--GIQECQSYDTEDGLFDVAW-------SENHENQVIAASGD 82 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC--CeEEEEeeecccceeEeee-------cCCCcceEEEEecC
Confidence 56788875 3344333 33333334477777664221 2222111112222245566 554 7889999999
Q ss_pred CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~ 298 (502)
|+++|||+.. +..+...++.|...|.++.|++..+..++++|.|++|++|+...
T Consensus 83 GSLrl~d~~~--------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 83 GSLRLFDLTM--------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ceEEEeccCC--------------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 9999999641 13355677789999999999998888899999999999999999
Q ss_pred CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~ 378 (502)
++.+.++.+|...|....|+|..+++++++|.|+++++||+|.+........|...+.|+.|+....+++++|+.|+.|+
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 99999999999999999999999999999999999999999998776667788889999999999999999999999999
Q ss_pred EEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
+||+|+. ..++..+.+|.-.|..+.|||....+|++++.|=+++|||...+. .++.+...|...+..+.|+
T Consensus 217 ~wDir~~--------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 217 GWDIRNL--------RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWS 287 (311)
T ss_pred EEehhhc--------cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-hhhhhhhccceEEeccccc
Confidence 9999998 588999999999999999999988999999999999999998654 3566777899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEC
Q 010748 459 EDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 459 pd~~~ll~sg~~dg~i~vwd~ 479 (502)
+-.+..+|+.+.|+.++||+.
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 977778999999999999984
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=258.87 Aligned_cols=283 Identities=16% Similarity=0.278 Sum_probs=227.7
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC-CeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
.|..+|.++.++|+.+++++|+.++ .-++|+...+... .+..|.+.+ .|+.| |.+|.|||||
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD-----~AflW~~~~ge~~~eltgHKDSV-----t~~~F-------shdgtlLATG 124 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDD-----LAFLWDISTGEFAGELTGHKDSV-----TCCSF-------SHDGTLLATG 124 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCc-----eEEEEEccCCcceeEecCCCCce-----EEEEE-------ccCceEEEec
Confidence 4889999999999999999999887 6667766655322 233555554 57766 7899999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
.++|.|+||...++.... .+..-...|.-|.|+|. .++|+.|+.||.|.+|.
T Consensus 125 dmsG~v~v~~~stg~~~~---------------------------~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQW---------------------------KLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQ 176 (399)
T ss_pred CCCccEEEEEcccCceEE---------------------------EeecccCceEEEEeccc-ccEEEeecCCCcEEEEE
Confidence 999999999998643222 22234567889999997 67999999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--------------------------
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------------------------- 349 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------------------- 349 (502)
+.++...+.+.+|+.++++=.|.|+| ..++++..||+|++|++.++.+.....
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 99988889999999999999999998 899999999999999998765432111
Q ss_pred -------------------------eecCCeeEEEeCCCCC--CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec
Q 010748 350 -------------------------AVAADVESLAWDPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA 402 (502)
Q Consensus 350 -------------------------~~~~~v~~v~~~~~~~--~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 402 (502)
.+...+.|+.+.|... .++++|+-||+|.|||+... .++..-.
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------~~R~~c~ 325 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------TLRHICE 325 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------hhheecc
Confidence 0001122232222211 26888999999999999864 4555667
Q ss_pred cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
|..+|+.+.|-+ . .+|++++.+|.|+.||.++++ +++.+.+|...|.+++++|+.+ +++|+|.|++.+||++.
T Consensus 326 he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 326 HEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCceEEEEEcC-c-chheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 999999999998 3 789999999999999999999 7889999999999999999999 69999999999999874
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=278.28 Aligned_cols=291 Identities=23% Similarity=0.390 Sum_probs=235.9
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCc-ceeeeecCCCCCCCCCCEEEEecCC
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP-LCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~la~g~~d 218 (502)
..|.+..|||.-++||+|-..+ ..+.|+-. .+..-|...+...+ ..+.| +..|.+||.|+..
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG-----~f~LyelP-----~f~lih~LSis~~~I~t~~~-------N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSG-----EFGLYELP-----DFNLIHSLSISDQKILTVSF-------NSTGDWIAFGCSK 328 (893)
T ss_pred cceeeeeccCCceEEEEEecCC-----eeEEEecC-----CceEEEEeecccceeeEEEe-------cccCCEEEEcCCc
Confidence 5799999999999999999887 44444433 22333434444333 34444 5679999999876
Q ss_pred -CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
|.+-||+..+. ......++|...+++++++|+ +.++|+|+.||.|+|||..
T Consensus 329 lgQLlVweWqsE---------------------------sYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 329 LGQLLVWEWQSE---------------------------SYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred cceEEEEEeecc---------------------------ceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEecc
Confidence 89999999752 233345689999999999999 5699999999999999999
Q ss_pred CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeCCC-
Q 010748 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDG- 375 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~dg- 375 (502)
++-|+.+|..|++.|+.++|+..+ +.+++++.||+|+.||+...+....+. ..+....|++..|.|. ++++|+.|.
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F 458 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF 458 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence 999999999999999999999999 999999999999999998766544222 3345578899999776 677777666
Q ss_pred cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 455 (502)
.|++|+++++ +.+-.+.+|.++|.+++|+|.+ ..|+++|.|.+||+||+-.... .+.++ .+...+..+
T Consensus 459 ~IfvWS~qTG---------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~-~vEtl-~i~sdvl~v 526 (893)
T KOG0291|consen 459 EIFVWSVQTG---------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG-TVETL-EIRSDVLAV 526 (893)
T ss_pred EEEEEEeecC---------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc-eeeeE-eeccceeEE
Confidence 5999999998 7888999999999999999998 8999999999999999976531 12233 345679999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748 456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 456 ~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
+|+|+|.. ||++..||.|.+||+..+..+..+-+
T Consensus 527 sfrPdG~e-laVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 527 SFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred EEcCCCCe-EEEEEecceEEEEEhhhceeeccccc
Confidence 99999994 99999999999999988877754433
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-35 Score=250.96 Aligned_cols=249 Identities=24% Similarity=0.324 Sum_probs=212.5
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+...++++++|..|.+|++...+. +...+...+.||...|..+..+++ +++.+++|.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~----------------------~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~sw 83 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDI----------------------KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASW 83 (315)
T ss_pred CCceEEEcccceEEEEEEeccCcc----------------------ccCceeeeeeccceEecceEEccC-CceEEeccc
Confidence 577899999999999999975322 224556677899999999999999 679999999
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee-cCCeeEEEeCCCC-C
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHA-E 365 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~-~ 365 (502)
|+++++||+.+++..+.|.+|...|.+++|++++ +.+++|+.|++|.+|++............ ...|.|++|+|.. .
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999999999999999999999999999999 89999999999999999875543322222 6789999999984 4
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010748 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
-++++++.|++|++||+++. +....+.+|++.++.+.+||+| .++++|+.||.+.+||++.++ .++.+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~---------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k--~lysl 230 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNC---------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK--NLYSL 230 (315)
T ss_pred cEEEEccCCceEEEEccCCc---------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc--eeEec
Confidence 48899999999999999986 7778889999999999999999 999999999999999999988 55555
Q ss_pred cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748 446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 446 ~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
.|...|.+++|+|+..+ |+.+ ....|+|||+.++..+..+-....++
T Consensus 231 -~a~~~v~sl~fspnryw-L~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~ 277 (315)
T KOG0279|consen 231 -EAFDIVNSLCFSPNRYW-LCAA-TATSIKIWDLESKAVVEELKLDGIGP 277 (315)
T ss_pred -cCCCeEeeEEecCCcee-Eeec-cCCceEEEeccchhhhhhcccccccc
Confidence 46789999999999864 6544 44569999999999987765554444
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-33 Score=260.48 Aligned_cols=282 Identities=20% Similarity=0.353 Sum_probs=240.6
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
....|+++.|+.+|.+||+|+.+| .++||..+...- ..+..|..++ +.+.| +..|+||++|+.
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G---~~riw~~~G~l~---~tl~~HkgPI----~slKW-------nk~G~yilS~~v 296 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDG---EARIWNKDGNLI---STLGQHKGPI----FSLKW-------NKKGTYILSGGV 296 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCc---EEEEEecCchhh---hhhhccCCce----EEEEE-------cCCCCEEEeccC
Confidence 446899999999999999999998 345555443332 4445555554 78889 688999999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
|+++.+||..++...+ .+.-|..+-..+.|-.+ ..+++++.|+.|+|+.+.
T Consensus 297 D~ttilwd~~~g~~~q---------------------------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~ 347 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQ---------------------------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVG 347 (524)
T ss_pred CccEEEEeccCceEEE---------------------------eeeeccCCccceEEecC--ceEeecCCCceEEEEEec
Confidence 9999999987644333 33357777788999876 379999999999999999
Q ss_pred CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC--------CEEE
Q 010748 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE--------HSFV 369 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~--------~~~~ 369 (502)
...++.++.+|.++|.+|.|+|.+ .+|++++.|++++||.+........+..|...|..+.|+|.++ ..++
T Consensus 348 ~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 348 EDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred CCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 999999999999999999999999 9999999999999999998888877888999999999998653 3788
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010748 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 449 (502)
Q Consensus 370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~ 449 (502)
+++.|++|++||+..+ .++..+..|+.+|.+++|+|++ .++|+|+.||.|.+|+.++++ .+....+ .
T Consensus 427 sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~--l~~s~~~-~ 493 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK--LVKSYQG-T 493 (524)
T ss_pred EeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh--eeEeecC-C
Confidence 9999999999999987 8899999999999999999998 999999999999999999998 4555544 4
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 450 ~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
+.|+.++|+.+|.+ |+.+-.||.+++-|++
T Consensus 494 ~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 494 GGIFELCWNAAGDK-LGACASDGSVCVLDLR 523 (524)
T ss_pred CeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence 66999999999985 7777889999999875
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-34 Score=281.10 Aligned_cols=274 Identities=22% Similarity=0.341 Sum_probs=227.0
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---------CC---------------------CCeeeeeccc
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---------GD---------------------PNLYVHHHII 188 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---------~~---------------------~~l~~~~~~~ 188 (502)
...+.|..|+++..+||+|..+- .+++|.+..... .. ..++.|.. +
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS---~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G-P 453 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDS---SVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG-P 453 (707)
T ss_pred CCcceeEeecCCcchhhcccccc---EEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC-c
Confidence 45789999999999999998774 678887763210 00 01222221 1
Q ss_pred cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748 189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268 (502)
Q Consensus 189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 268 (502)
+ + ...|+|+.++|++++.|++||+|.+.+ ......+.||..+
T Consensus 454 V----y-------g~sFsPd~rfLlScSED~svRLWsl~t---------------------------~s~~V~y~GH~~P 495 (707)
T KOG0263|consen 454 V----Y-------GCSFSPDRRFLLSCSEDSSVRLWSLDT---------------------------WSCLVIYKGHLAP 495 (707)
T ss_pred e----e-------eeeecccccceeeccCCcceeeeeccc---------------------------ceeEEEecCCCcc
Confidence 1 2 234589999999999999999999986 3344456699999
Q ss_pred eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 348 (502)
|+++.|+|. +.++||||.|++-++|.....++++.+.+|-+.|.|+.|||+. +++++||.|.+|++||+.++..+..+
T Consensus 496 VwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 496 VWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF 573 (707)
T ss_pred eeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe
Confidence 999999998 7899999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
.+|.++|++++|+|.|. ++++|+.+|.|.+||+.++ .++..+.+|++.|.++.|+.+| ..||+|+.|++
T Consensus 574 ~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~Dns 642 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNS 642 (707)
T ss_pred cCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEecCC-CEEEecCCCCe
Confidence 89999999999999765 8999999999999999987 7889999999999999999998 99999999999
Q ss_pred EEEEECCCCCe----------------------eEEEEecCCCCcEEEEEEcCCCCcEEEEE
Q 010748 429 VKLWDLSNNQP----------------------SCIASRNPKAGAVFSVAFSEDSPFVLAIG 468 (502)
Q Consensus 429 i~vwd~~~~~~----------------------~~~~~~~~~~~~v~~~~~spd~~~ll~sg 468 (502)
|++||+..... .++..+.....+|.++.|....- +|++|
T Consensus 643 V~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g 703 (707)
T KOG0263|consen 643 VRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG 703 (707)
T ss_pred EEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence 99999865321 13444444556777777776552 44443
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=244.49 Aligned_cols=249 Identities=21% Similarity=0.345 Sum_probs=214.0
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|+|.+||+|+.|..|.+|++.... .-...+++|+++|+.+.|.++ ++.|+++
T Consensus 56 ~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------eN~~~lkgHsgAVM~l~~~~d-~s~i~S~ 108 (338)
T KOG0265|consen 56 HPDGSCFASGGSDRAIVLWNVYGDC--------------------------ENFWVLKGHSGAVMELHGMRD-GSHILSC 108 (338)
T ss_pred CCCCCeEeecCCcceEEEEeccccc--------------------------cceeeeccccceeEeeeeccC-CCEEEEe
Confidence 7999999999999999999975311 111234489999999999999 6699999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 365 (502)
+.|.+|+.||+++|++++.+++|..-|.++.-+.-|..++.+++.||++++||+|+..... ......+++++.|...+.
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-TFENKYQLTAVGFKDTSD 187 (338)
T ss_pred cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-ccccceeEEEEEeccccc
Confidence 9999999999999999999999999999999888888899999999999999999877665 455677899999998766
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEE
Q 010748 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIA 443 (502)
Q Consensus 366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~ 443 (502)
.+.+|+-|+.|++||+|.. ..++.+.+|..+|+.+..+|.| .++.+-+.|.++++||++...+ .++.
T Consensus 188 -qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 188 -QVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred -ceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEE
Confidence 6999999999999999987 7899999999999999999998 9999999999999999986433 2455
Q ss_pred EecCCC----CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 444 SRNPKA----GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 444 ~~~~~~----~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
.+.+|. -....++|+|++.+ +.+|+.|..+++||..+...+..+-+|.-.
T Consensus 257 if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~gs 310 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYGS 310 (338)
T ss_pred EeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCccee
Confidence 555442 23567899999996 888999999999999988888777776543
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=262.20 Aligned_cols=244 Identities=20% Similarity=0.360 Sum_probs=215.4
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748 193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
...+.| .|+|+.|++|+..|.+.+|+..+ ......++.|..+|+++
T Consensus 99 V~~v~W-------tPeGRRLltgs~SGEFtLWNg~~---------------------------fnFEtilQaHDs~Vr~m 144 (464)
T KOG0284|consen 99 VNVVRW-------TPEGRRLLTGSQSGEFTLWNGTS---------------------------FNFETILQAHDSPVRTM 144 (464)
T ss_pred eeeEEE-------cCCCceeEeecccccEEEecCce---------------------------eeHHHHhhhhcccceeE
Confidence 345666 79999999999999999999843 23344567899999999
Q ss_pred EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee
Q 010748 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (502)
.|+++ +.+++||+.+|.|++|+..-.. ++.++ +|...|++++|+|.. ..|++++.||+|+|||.+..+.-..+.+|
T Consensus 145 ~ws~~-g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GH 221 (464)
T KOG0284|consen 145 KWSHN-GTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGH 221 (464)
T ss_pred EEccC-CCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccC
Confidence 99999 6699999999999999976544 44454 455999999999987 89999999999999999998887777899
Q ss_pred cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748 352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
.-.|.++.|+|..+ ++++|+.|..|++||.+++ .++.++..|+..|..+.|+|++ ++|+|+|.|..+++
T Consensus 222 gwdVksvdWHP~kg-LiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKV 290 (464)
T ss_pred CCCcceeccCCccc-eeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEE
Confidence 99999999999754 8999999999999999998 8899999999999999999998 99999999999999
Q ss_pred EECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~ 486 (502)
||+++.+ -++.+.+|...|+++.|+|-...+|++||.||.|..|.+...+.+.
T Consensus 291 ~DiR~mk--El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 291 FDIRTMK--ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred EehhHhH--HHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 9999665 5778889999999999999888899999999999999998555443
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.1e-33 Score=241.66 Aligned_cols=287 Identities=17% Similarity=0.270 Sum_probs=237.5
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
..|..+|..+.|+|+|.++|+|+.+. .+-+|...........+..|...+ +-+.| .++++.|+++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr---~I~LWnv~gdceN~~~lkgHsgAV-----M~l~~-------~~d~s~i~S~ 108 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDR---AIVLWNVYGDCENFWVLKGHSGAV-----MELHG-------MRDGSHILSC 108 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcc---eEEEEeccccccceeeecccccee-----Eeeee-------ccCCCEEEEe
Confidence 56899999999999999999999997 334444333332112233333222 45555 6899999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+.|.+|+.||+.++.... .+++|..-|+++.-+.-|..++.||+.|++++|||
T Consensus 109 gtDk~v~~wD~~tG~~~r---------------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIR---------------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred cCCceEEEEecccceeee---------------------------hhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 999999999998755433 45589999999997777778999999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg 375 (502)
+++..+++++. ....++++.|...+ ..+++|+-|+.|++||+|.......+.+|...|+.+..+|.|. ++++-+.|.
T Consensus 162 ~R~k~~~~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~ 238 (338)
T KOG0265|consen 162 IRKKEAIKTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDN 238 (338)
T ss_pred ecccchhhccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccc
Confidence 99998888886 46789999999988 7899999999999999999999888899999999999999876 789999999
Q ss_pred cEEEEECCCCCCCCCCCCCccceEEeccC----CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 451 (502)
++++||+|..... ..++..+.+|. .....++|+|++ ..+.+|+.|..+++||..... .++.+++|.+.
T Consensus 239 tvrvwd~rp~~p~-----~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gs 310 (338)
T KOG0265|consen 239 TVRVWDVRPFAPS-----QRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR--ILYKLPGHYGS 310 (338)
T ss_pred eEEEEEecccCCC-----CceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc--EEEEcCCccee
Confidence 9999999976331 24456665553 345678999998 899999999999999998876 78899999999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748 452 VFSVAFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 452 v~~~~~spd~~~ll~sg~~dg~i~v 476 (502)
|.++.|+|..+ +|.+++.|.+|++
T Consensus 311 vn~~~Fhp~e~-iils~~sdk~i~l 334 (338)
T KOG0265|consen 311 VNEVDFHPTEP-IILSCSSDKTIYL 334 (338)
T ss_pred EEEeeecCCCc-EEEEeccCceeEe
Confidence 99999999999 6888999999876
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.8e-34 Score=253.62 Aligned_cols=240 Identities=26% Similarity=0.419 Sum_probs=218.0
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
++.|...+|++|+.|++|.|||+.++ .++..+.||...|..+++++-. .+|+
T Consensus 158 avdP~n~wf~tgs~DrtikIwDlatg---------------------------~LkltltGhi~~vr~vavS~rH-pYlF 209 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLATG---------------------------QLKLTLTGHIETVRGVAVSKRH-PYLF 209 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcccC---------------------------eEEEeecchhheeeeeeecccC-ceEE
Confidence 34788999999999999999999873 4445667999999999999984 4999
Q ss_pred EEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 284 sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 363 (502)
+++.|+.|+.||+...+.++.+.+|-+.|.|++.+|.- ..|++|+.|.++++||+|+...+..+.+|...|.++.+.|.
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 99999999999999999999999999999999999998 89999999999999999999988888899999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
++ .+++|+.|++|++||++.+ +....+..|...|.+++.+|.- ..+|+++.|. |+-|++..+. .+.
T Consensus 289 dp-qvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g~--f~~ 354 (460)
T KOG0285|consen 289 DP-QVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEGE--FLQ 354 (460)
T ss_pred CC-ceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCccc--hhh
Confidence 77 6999999999999999997 7788899999999999999976 8888888875 9999999887 566
Q ss_pred EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
.+.+|.+-|++++...|+ ++++|+.+|.|.+||.+++...++.
T Consensus 355 nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 355 NLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccc
Confidence 688999999999999998 5889999999999999998876544
No 24
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-32 Score=247.64 Aligned_cols=292 Identities=21% Similarity=0.322 Sum_probs=241.0
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
-.|++.|.+++.. +..|++|+.++ .++||....... ..+..|..++ ..+.|+.- .+....|+++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg---~~riWd~~Gk~~---~~~~Ght~~i----k~v~~v~~----n~~~~~fvsa 165 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDG---TSRIWDLKGKSI---KTIVGHTGPI----KSVAWVIK----NSSSCLFVSA 165 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCC---eeEEEecCCceE---EEEecCCcce----eeeEEEec----CCccceEEEe
Confidence 3588999999999 88999999998 557776655443 5666666555 45677632 2335589999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
++|.++++|.++.++.+.. ......||...|-+++..++ +.++++||.|.+|+||+
T Consensus 166 s~Dqtl~Lw~~~~~~~~~~-----------------------~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGENKVK-----------------------ALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWS 221 (423)
T ss_pred cCCceEEEEEecCchhhhh-----------------------HHhHhcccccceeEEEecCC-CCeEEeecccceeeecc
Confidence 9999999999986554322 11122399999999999999 67999999999999999
Q ss_pred CC-------------------------CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe
Q 010748 296 VA-------------------------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 350 (502)
Q Consensus 296 ~~-------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (502)
.. ++.++.++.+|..+|.++.|++. ..+++++.|.+|+.||+.++.... ...
T Consensus 222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~-~~~ 298 (423)
T KOG0313|consen 222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS-TLT 298 (423)
T ss_pred cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee-eee
Confidence 32 22456788999999999999994 589999999999999999988766 455
Q ss_pred ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430 (502)
Q Consensus 351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~ 430 (502)
....+.|+..+|.. .++++|+.|..+++||.|++.. ....+++.+|+..|.++.|+|....+|++|+.|++++
T Consensus 299 ~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 299 TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 67789999999964 5899999999999999999843 4567889999999999999999989999999999999
Q ss_pred EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
+||+++.+. +++.+.+|...|.++.|...+ ++++||.|.+|+|+.-.
T Consensus 372 lWDvRS~k~-plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 372 LWDVRSTKA-PLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEeccCCC-cceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 999998762 578889999999999998765 59999999999998754
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.1e-32 Score=289.53 Aligned_cols=295 Identities=18% Similarity=0.224 Sum_probs=228.7
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--C---CCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--G---DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 211 (502)
.|...|.+++|+|++++||+|+.++ .++||....... . .+.....+ .....++.|. ++.+++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~---~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~------~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNK---KIKIFECESIIKDGRDIHYPVVELAS----RSKLSGICWN------SYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCC---EEEEEECCcccccccccccceEEecc----cCceeeEEec------cCCCCE
Confidence 3788899999999999999999887 566666542110 0 00111111 1223566774 235889
Q ss_pred EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 291 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v 291 (502)
||+|+.||+|+|||+.+.. ....+.+|...|++++|+|..+.+|++|+.||+|
T Consensus 548 las~~~Dg~v~lWd~~~~~---------------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v 600 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQ---------------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV 600 (793)
T ss_pred EEEEeCCCeEEEEECCCCe---------------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEE
Confidence 9999999999999997532 2224457999999999998547799999999999
Q ss_pred EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeCCCCCCEEEE
Q 010748 292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~ 370 (502)
++||+.++.++..+..+ ..|.++.|++..+.+|++|+.||.|++||++.... ......|...|.++.|.+ + ..+++
T Consensus 601 ~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~-~~lvs 677 (793)
T PLN00181 601 KLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S-STLVS 677 (793)
T ss_pred EEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C-CEEEE
Confidence 99999999998888754 68999999765448999999999999999987653 334457888999999974 3 47999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE------
Q 010748 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS------ 444 (502)
Q Consensus 371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~------ 444 (502)
++.|+.|++||++...... ...++..+.+|...+.+++|+|++ .+|++|+.|+.|++|+.....+...+.
T Consensus 678 ~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~ 753 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP 753 (793)
T ss_pred EECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence 9999999999998642100 025677889999999999999997 899999999999999987665332222
Q ss_pred -----ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 445 -----RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 445 -----~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
...+...|.+++|+|++. +|++|+.+|.|+||++
T Consensus 754 ~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 754 VSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred ccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 123456799999999999 5889999999999996
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-31 Score=253.69 Aligned_cols=283 Identities=30% Similarity=0.492 Sum_probs=230.8
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
.|...|.++.|+|++++|++++.++ .+.+|.+..... ......|... ..++.| ++++++|++++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g---~i~i~~~~~~~~--~~~~~~~~~~----i~~~~~-------~~~~~~l~~~~ 70 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDG---TIKVWDLETGEL--LRTLKGHTGP----VRDVAA-------SADGTYLASGS 70 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCc---EEEEEEeeCCCc--EEEEecCCcc----eeEEEE-------CCCCCEEEEEc
Confidence 4788999999999999999998776 556666654321 1111122111 135566 67889999999
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
.+|.|++|++..... ...+..|...|.++.|+++ +.++++++.++.|++||+
T Consensus 71 ~~~~i~i~~~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 71 SDKTIRLWDLETGEC---------------------------VRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122 (289)
T ss_pred CCCeEEEEEcCcccc---------------------------eEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEEC
Confidence 999999999975321 1233468889999999998 568888888999999999
Q ss_pred CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~ 376 (502)
.+++....+..|...|.++.|+|++ .++++++.++.|++||++..+.......+...+.++.|+|++. .+++++.+|.
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~ 200 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGT 200 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCc
Confidence 9999999999999999999999997 7888888899999999998777666667777899999999875 6777778999
Q ss_pred EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
|++||++.. ..+..+..|...+.++.|+|++ .++++++.+|.|++|++.+++ ....+..|...|.+++
T Consensus 201 i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~ 268 (289)
T cd00200 201 IKLWDLSTG---------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLA 268 (289)
T ss_pred EEEEECCCC---------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEE
Confidence 999999875 5566666888899999999985 888888889999999998876 4555568888999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEE
Q 010748 457 FSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 457 ~spd~~~ll~sg~~dg~i~vwd 478 (502)
|+|++. .|++++.||.|++|+
T Consensus 269 ~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 269 WSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred ECCCCC-EEEEecCCCeEEecC
Confidence 999988 588999999999996
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-33 Score=270.33 Aligned_cols=290 Identities=22% Similarity=0.351 Sum_probs=242.4
Q ss_pred Ccccccccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 138 DSEDLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
-.++|.+|+|. |..+.||+|++.. .+++|....... .++..|+-.+ +.+.- ..+|-+||+|+
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~---~lr~y~~~~~~c---~ii~GH~e~v----lSL~~-------~~~g~llat~s 384 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSP---ELRLYTLPTSYC---QIIPGHTEAV----LSLDV-------WSSGDLLATGS 384 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCC---ceEEEecCCCce---EEEeCchhhe----eeeee-------cccCcEEEEec
Confidence 35689999987 8899999999887 567775444444 3554444333 34431 24678999999
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
.|.++++|.++..... ........+|+..|.+++++..+..+|+++|.|+++++|++
T Consensus 385 KD~svilWr~~~~~~~-----------------------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSK-----------------------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred CCceEEEEEecCCcch-----------------------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 9999999998532221 22223445899999999999988899999999999999999
Q ss_pred CCCee-----e----EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748 297 AAGKC-----N----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 297 ~~~~~-----~----~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 367 (502)
...+. + .+...|...|+|++.+|+. .+++|||.|++.++|++........+.+|...|.||.|+|... +
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~ 519 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-L 519 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-e
Confidence 76221 1 1335699999999999999 9999999999999999998887888889999999999999754 8
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 447 (502)
Q Consensus 368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~ 447 (502)
+++++.|++|+||.+.+. .++.++.+|+..|..+.|-.++ ..|++++.||.|++|+++++. |..++..
T Consensus 520 laT~SgD~TvKIW~is~f---------SClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e--C~~tlD~ 587 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTF---------SCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE--CEMTLDA 587 (775)
T ss_pred eEeccCCceEEEEEeccc---------eeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh--hhhhhhh
Confidence 999999999999999997 8999999999999999999998 899999999999999999998 8999999
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
|...|++++.+|... +++||+.||.|.+|.=-+.
T Consensus 588 H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ccceeEEEeecCccc-eeEecCCCeEEEEeecCcH
Confidence 999999999999998 6999999999999965443
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=273.23 Aligned_cols=286 Identities=22% Similarity=0.366 Sum_probs=232.1
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCC-CCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
+...|.++.|+|+|+.+++++.++ .+.+|...... .....+..|+..+ .+++| +|+++++++|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~---~i~~~~~~~~~~~~~~~l~~h~~~v-----~~~~f-------s~d~~~l~s~s 222 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDG---LIRIWKLEGIKSNLLRELSGHTRGV-----SDVAF-------SPDGSYLLSGS 222 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCC---cEEEeecccccchhhccccccccce-----eeeEE-------CCCCcEEEEec
Confidence 467899999999999999998887 55777663332 1112232333222 45555 89999999999
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
.|++|+|||+... ......+.+|...|++++|+|.+ +++++|+.|++|+|||+
T Consensus 223 ~D~tiriwd~~~~--------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 223 DDKTLRIWDLKDD--------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDV 275 (456)
T ss_pred CCceEEEeeccCC--------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEec
Confidence 9999999999321 23344566999999999999996 89999999999999999
Q ss_pred CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC--ccceEeecC--CeeEEEeCCCCCCEEEEEe
Q 010748 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAA--DVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~--~v~~v~~~~~~~~~~~~~~ 372 (502)
++++++..+.+|...|++++|++++ ++|++++.|+.|++||+.++.. ......+.. .+.+++|+|++. ++++++
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~ 353 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSAS 353 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEec
Confidence 9999999999999999999999999 8999999999999999999883 333333333 599999999876 899999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCccceEEeccCCC---eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-
Q 010748 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA---VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK- 448 (502)
Q Consensus 373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~- 448 (502)
.|+.+++||++.. ..+....+|... +.+..+++.+ .++++|+.|+.|++|++.++. .+..+.+|
T Consensus 354 ~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h~ 421 (456)
T KOG0266|consen 354 LDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG--ILQRLEGHS 421 (456)
T ss_pred CCCeEEEEEccCC---------cceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc--hhhhhcCCC
Confidence 9999999999987 667777777764 3344456666 999999999999999999876 46667778
Q ss_pred CCcEEEEEEcCCCCcEEEEEe--CCCcEEEEECC
Q 010748 449 AGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTL 480 (502)
Q Consensus 449 ~~~v~~~~~spd~~~ll~sg~--~dg~i~vwd~~ 480 (502)
...+..+.++|... ++++++ .|+.+++|...
T Consensus 422 ~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 KAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 88999999999998 588887 68899999753
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=260.04 Aligned_cols=286 Identities=20% Similarity=0.303 Sum_probs=239.2
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
+.+.|.++.|||+...++++-..| .+.||.|++... ....+ +...|... ..|-...+++++|+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG---~V~IWnyetqtm----Vksfe---V~~~PvRa------~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNG---DVQIWNYETQTM----VKSFE---VSEVPVRA------AKFIARKNWIVTGSD 75 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecC---eeEEEeccccee----eeeee---ecccchhh------heeeeccceEEEecC
Confidence 678899999999999999999888 569999987652 22222 22222221 112356889999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
|..||||++++++. ...+..|.+-|.||+.+|. ..+++|+|.|-+|++||.+
T Consensus 76 D~~IrVfnynt~ek---------------------------V~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEK---------------------------VKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred CceEEEEeccccee---------------------------eEEeeccccceeeeeecCC-CCeEEecCCccEEEEeecc
Confidence 99999999987543 3456789999999999999 5599999999999999997
Q ss_pred CC-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC-CCEEEEEeCCC
Q 010748 298 AG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-EHSFVVSLEDG 375 (502)
Q Consensus 298 ~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~~dg 375 (502)
.. .|.++|.+|+..|.+++|+|..++.+++++.|++|++|.+.++.+...+.+|...|+|+.+-+-+ .-++++|+.|.
T Consensus 128 ~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 128 NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 65 78999999999999999999999999999999999999999998888888999999999998754 23899999999
Q ss_pred cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 455 (502)
.|++||.++. .++.++.+|...|+.+.|+|.- -+++|||.||++|||+..+.+ ...++......|+|+
T Consensus 208 tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~--lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 208 TIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYK--LEKTLNYGLERVWCI 275 (794)
T ss_pred eEEEeecchH---------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCccee--hhhhhhcCCceEEEE
Confidence 9999999997 8999999999999999999987 799999999999999988876 455566667889999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 456 AFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 456 ~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+-.+.+. .++.|...|.|. ..+..
T Consensus 276 ~~~k~~~-~i~vG~Deg~i~-v~lgr 299 (794)
T KOG0276|consen 276 AAHKGDG-KIAVGFDEGSVT-VKLGR 299 (794)
T ss_pred eecCCCC-eEEEeccCCcEE-EEccC
Confidence 9988887 477776666543 34433
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-31 Score=248.39 Aligned_cols=324 Identities=16% Similarity=0.262 Sum_probs=245.8
Q ss_pred CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
..+|..-|.|+.|+|+|.++++++.++ ++++|+...+.....+. ......+-.+.+.| +||+..+++
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDg-----ki~iyDGktge~vg~l~-~~~aHkGsIfalsW-------sPDs~~~~T 252 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDG-----KIYIYDGKTGEKVGELE-DSDAHKGSIFALSW-------SPDSTQFLT 252 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCc-----cEEEEcCCCccEEEEec-CCCCccccEEEEEE-------CCCCceEEE
Confidence 356889999999999999999999999 99999987762211111 01122233478888 899999999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchh------hhhh----------ccccCCcccccccccCcccceeeEEeccCC
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKK----------KSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 278 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~----------~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 278 (502)
++.|.+++|||+.+.........-.....+ ++.. .--..........+.+|...|++|..+|++
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence 999999999999887555443322221111 0000 000011223556778999999999999995
Q ss_pred CcEEEEEecCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc----------
Q 010748 279 RNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---------- 347 (502)
Q Consensus 279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------- 347 (502)
.+|++|+.||.|.-|+..++..-+.. ++|+..|.+++-+..+ .+++++.|.++++.++........
T Consensus 333 -~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 333 -KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred -CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 79999999999999999998776554 7899999999988755 588999999999997642111000
Q ss_pred ---------------------e--------EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce
Q 010748 348 ---------------------K--------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 398 (502)
Q Consensus 348 ---------------------~--------~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 398 (502)
+ ....-...+++++|++. .+++|+.||.|++|.+..... ....
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l-------~ee~ 481 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDEL-------KEEA 481 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEecccceEEEEEecCCcc-------ccee
Confidence 0 01122457889999765 899999999999999987631 3445
Q ss_pred EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
.+..|.++|++++|+|++ .+||+|...+.+.+||+.+.+. .......|.+.|.|++|+|+.. ++|+|+.|..|.||+
T Consensus 482 ~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYS 558 (603)
T ss_pred eeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEE
Confidence 667899999999999998 9999999999999999998875 3444456899999999999998 799999999999999
Q ss_pred CCCCccc
Q 010748 479 TLSDAGI 485 (502)
Q Consensus 479 ~~~~~~~ 485 (502)
+......
T Consensus 559 v~kP~~~ 565 (603)
T KOG0318|consen 559 VKKPAKH 565 (603)
T ss_pred ccChhhh
Confidence 9775544
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=264.65 Aligned_cols=297 Identities=23% Similarity=0.330 Sum_probs=243.5
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
.+++..+...+....+++.+.+. .+..|+..+... ..+.+.|+.+ +.+.++ .|..++||+++.
T Consensus 281 ~~e~~~~~~~~~~~~~l~vtaeQ-----nl~l~d~~~l~i~k~ivG~ndEI-----~Dm~~l------G~e~~~laVATN 344 (775)
T KOG0319|consen 281 SEEIDHLLAIESMSQLLLVTAEQ-----NLFLYDEDELTIVKQIVGYNDEI-----LDMKFL------GPEESHLAVATN 344 (775)
T ss_pred chhhhcceeccccCceEEEEccc-----eEEEEEccccEEehhhcCCchhh-----eeeeec------CCccceEEEEeC
Confidence 34477777777777777777776 555665444311 1233445444 445554 678899999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
.+.+|+|++.+..+. .+.||+..|++|..... +.+|+|||.|+++++|.++
T Consensus 345 s~~lr~y~~~~~~c~----------------------------ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ----------------------------IIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLN 395 (775)
T ss_pred CCceEEEecCCCceE----------------------------EEeCchhheeeeeeccc-CcEEEEecCCceEEEEEec
Confidence 999999988765543 34589999999995555 4699999999999999885
Q ss_pred CC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc--c-------ceEeecCCeeEEEeCCCC
Q 010748 298 AG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--G-------FKWAVAADVESLAWDPHA 364 (502)
Q Consensus 298 ~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~-------~~~~~~~~v~~v~~~~~~ 364 (502)
.+ -++....+|+..|.+++++..+..+|+++|.|+++++|++...+.. . ....|...|+|++.+|+.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 44 3456668999999999999999999999999999999999872211 1 123578899999999976
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. ++++|+.|.+.++|++... .....+.+|+..|.++.|+|.. ++++|+|.|++|+||.+.+.. |+.+
T Consensus 476 k-LiAT~SqDktaKiW~le~~---------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS--ClkT 542 (775)
T KOG0319|consen 476 K-LIATGSQDKTAKIWDLEQL---------RLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS--CLKT 542 (775)
T ss_pred c-eEEecccccceeeecccCc---------eEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce--eeee
Confidence 5 9999999999999999965 7889999999999999999987 999999999999999999887 9999
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+.+|...|..+.|-.++.+ |++++.||.|++|+++++.|+.++-.|..+
T Consensus 543 ~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred ecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 9999999999999999995 889999999999999999999988777543
No 32
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-32 Score=248.61 Aligned_cols=251 Identities=22% Similarity=0.389 Sum_probs=216.8
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+.+.+++|+++..+.|.|||.......... .....+...+.+|...-.+|+|++.....|++|
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----------------~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKA-----------------SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccc-----------------cccCCCceEEEeecccccccccccccceeEeec
Confidence 346888999999999999998754332210 002344556778999899999999977799999
Q ss_pred ecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC--CCCccceEeecCCee
Q 010748 286 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGFKWAVAADVE 356 (502)
Q Consensus 286 s~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~ 356 (502)
+.|++|++||+... .+...+.+|...|..++|++....+|++++.|+.+.|||+|+ .+.......|.+.+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 99999999999754 235567899999999999999989999999999999999995 444555668899999
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
|++|+|.+..+|++|+.|++|++||+|+. ..++.++.+|...|.+|.|+|+...+||+++.|+.+.|||+..
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 99999999999999999999999999998 5789999999999999999999989999999999999999864
Q ss_pred ------------CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 437 ------------NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 437 ------------~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+.+.+++...+|...|..+.|+|..+++|++.+.|+.+.||.+..
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567899999999999999999999999999999999999863
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=229.04 Aligned_cols=283 Identities=21% Similarity=0.389 Sum_probs=223.2
Q ss_pred CCCccccccccccCC-CceEEEEEecCCcceeEEEEEecCCCCCCCeeee------eccccCCCcceeeeecCCCCCCCC
Q 010748 136 DEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH------HHIIIPAFPLCMAWLDCPLKDREK 208 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~s~~ 208 (502)
+.|.+.+-.++|+|- |.+||+++.+. .++||.... .. .+... |...+ -.++| +|.
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk---~vriw~~~~-~~---s~~ck~vld~~hkrsV----RsvAw-------sp~ 72 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDK---AVRIWSTSS-GD---SWTCKTVLDDGHKRSV----RSVAW-------SPH 72 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCc---eEEEEecCC-CC---cEEEEEeccccchhee----eeeee-------cCC
Confidence 347778999999999 99999999887 456665553 11 22211 22222 35566 899
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
|++||+|+.|.++.||.-... .......+.||...|.|++|+++ +++||+||.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~-------------------------efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRD 126 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDG-------------------------EFECVATLEGHENEVKCVAWSAS-GNYLATCSRD 126 (312)
T ss_pred CcEEEEeeccceEEEeecCCC-------------------------ceeEEeeeeccccceeEEEEcCC-CCEEEEeeCC
Confidence 999999999999999975421 13334566799999999999999 6699999999
Q ss_pred CcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC---CCccceEeecCCeeEEEeCC
Q 010748 289 KQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 289 g~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~ 362 (502)
+.|.||.+..+ .+...++.|+..|..+.|||.. .+|+++++|.+|++|.-... .+...+..+...|.+++|++
T Consensus 127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 99999998744 6888999999999999999998 89999999999999987632 23455567778999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--e-
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P- 439 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--~- 439 (502)
.|. .+++++.|++|+||-..+. - -..|+..+..+.|. + ..|++++.|+.|+||.-...- +
T Consensus 206 ~G~-rl~s~sdD~tv~Iw~~~~~---------~----~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~ 268 (312)
T KOG0645|consen 206 IGS-RLVSCSDDGTVSIWRLYTD---------L----SGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPS 268 (312)
T ss_pred CCc-eEEEecCCcceEeeeeccC---------c----chhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCch
Confidence 875 7999999999999987643 1 12478889999999 3 689999999999999766421 1
Q ss_pred --eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 440 --SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 440 --~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
........|...|++++|.|..+.+|++||.||.|++|.+.
T Consensus 269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11223456888999999999655579999999999999874
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=242.86 Aligned_cols=290 Identities=16% Similarity=0.293 Sum_probs=233.3
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 213 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la 213 (502)
.+|.++|.-++|+++|++||+|+.+. +.-||....... ....+..|+..+ ..+.| |||.++|+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh~~~V-----~yi~w-------SPDdryLl 285 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGHSQPV-----SYIMW-------SPDDRYLL 285 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecccCce-----EEEEE-------CCCCCeEE
Confidence 57999999999999999999999886 456665544331 011223344333 46677 89999999
Q ss_pred EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748 214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v 293 (502)
+++.+..+.+||+.+++..... ..+|...+.+++|.|+ +..+++|+.|+++..
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y--------------------------~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLY--------------------------PSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIM 338 (519)
T ss_pred ecCchHheeeccCCcchhhhhc--------------------------ccCcCCCcceeEEccC-CceeEecCCCCcEEE
Confidence 9999999999999987654321 1246688999999999 568999999999999
Q ss_pred EeCCCCeeeEeeccC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe
Q 010748 294 WDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 294 wd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~ 372 (502)
||+. |......++- ...|.+++..++| .++++.+.|..|++++..+..... ......+|++++.+.++. ++++.-
T Consensus 339 wdlD-gn~~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k-~~LvnL 414 (519)
T KOG0293|consen 339 WDLD-GNILGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGK-LALVNL 414 (519)
T ss_pred ecCC-cchhhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCc-EEEEEc
Confidence 9986 4444445443 2579999999999 888888899999999998765543 456678899999999865 888888
Q ss_pred CCCcEEEEECCCCCCCCCCCCCccceEEeccCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010748 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 450 (502)
Q Consensus 373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 450 (502)
.+..+++||+... ..+..+.+|... +..-+|.-....++++||.|+.|+||+..+++ ++..+.+|..
T Consensus 415 ~~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~ 483 (519)
T KOG0293|consen 415 QDQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSK 483 (519)
T ss_pred ccCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCcc
Confidence 9999999999965 777888888754 44445655445799999999999999999998 6888999999
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
.|+|++|+|..+++||+||.||+|+||-....
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999999999987643
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=252.79 Aligned_cols=289 Identities=16% Similarity=0.294 Sum_probs=239.4
Q ss_pred CCCccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 136 DEDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
..|...|+++.|.| .+.+|++++.++ .++||.+..... ....|.+|..++ ..+.| +++|..+++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~---~vklW~vy~~~~-~lrtf~gH~k~V----rd~~~-------s~~g~~fLS 275 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDG---LVKLWNVYDDRR-CLRTFKGHRKPV----RDASF-------NNCGTSFLS 275 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCc---eEEEEEEecCcc-eehhhhcchhhh----hhhhc-------cccCCeeee
Confidence 57999999999999 899999999997 556665554332 234456665554 33444 788999999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
++.|+.|++||++++.+...+. -...++|+.|+|++.+.+++|+.|+.|+.|
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~----------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFH----------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred eecceeeeeeccccceEEEEEe----------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 9999999999999877654321 235689999999988999999999999999
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEeCCCCCCEEEEEeC
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~ 373 (502)
|+++++.++.+..|-+.|..+.|-+.+ ..+++++.|++++||+.+.+....... .......|+..+|+++ .+++-+.
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~ 405 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSM 405 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhcc
Confidence 999999999999999999999999999 899999999999999999887654333 3345678899999876 7888899
Q ss_pred CCcEEEEECCCCCCCCCCCCCccceEEeccC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451 (502)
Q Consensus 374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 451 (502)
++.|.+|.+..... ......+.+|. +.-+.+.|||+| .+|++|..||.+.+||.++.+ .+..+..|.++
T Consensus 406 dN~i~ifs~~~~~r------~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~ 476 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFR------LNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQP 476 (503)
T ss_pred CceEEEEecccccc------cCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh--hhhccccCCcc
Confidence 99999999765421 23344556664 567889999998 999999999999999999887 57778889999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 452 VFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 452 v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
+..+.|+|..+..+||+|.+|.|++|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 999999999888899999999999996
No 36
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-32 Score=230.95 Aligned_cols=220 Identities=23% Similarity=0.396 Sum_probs=198.6
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCC-CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 343 (502)
-.+.+..++|++...+.+++++.||+++|||+.. .++++.++.|...|.++.|++.....++++|.|++|++|+...+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4578999999999999999999999999999653 368889999999999999999888899999999999999999988
Q ss_pred CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748 344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~ 423 (502)
.+..+.+|...|....|+|..+++|++++.||.+++||++.. .+. ..+..|...|.++.|+...+++|+||
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKF-MSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC--------Cce-eEEEeccceeEeecccccCCcEEEec
Confidence 888888899999999999999999999999999999999987 234 44899999999999999888999999
Q ss_pred eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+.|+.|++||+++.+ .++..+.+|.-.|+.+.|||....+||+++.|-+++|||...+....+...++..
T Consensus 210 ~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE 279 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE 279 (311)
T ss_pred CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce
Confidence 999999999999876 4688889999999999999998889999999999999999987776666655543
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=252.49 Aligned_cols=322 Identities=18% Similarity=0.283 Sum_probs=252.2
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEec
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
...|.+++|||+|+++|+|+.. .++||..-.......+.++.|...+..+ ..++.| +.|.++|++|+
T Consensus 96 k~~v~~i~fSPng~~fav~~gn----~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~W-------s~DSr~l~~gs 164 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGN----LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDW-------SDDSRLLVTGS 164 (893)
T ss_pred cCccceEEECCCCcEEEEEecc----eeEEEecCcchhcccCcceEeeeecCCccceeEEEe-------ccCCceEEecc
Confidence 3578999999999999999866 4788876544432334555554444333 357777 78999999999
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchh--------------------------h-hhhcccc-----------------
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEE--------------------------K-KKKKSKK----------------- 252 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~--------------------------~-~~~~~~~----------------- 252 (502)
.|-+++||.++..+.+.+....|-.... . +.....+
T Consensus 165 rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~ 244 (893)
T KOG0291|consen 165 RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG 244 (893)
T ss_pred ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence 9999999999877765443332211110 0 0000000
Q ss_pred -------CCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEE
Q 010748 253 -------GKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 325 (502)
Q Consensus 253 -------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 325 (502)
.-.+..++.+......|++.+|++. .++|++|-..|...+|.+....+++.+.-...+|..+.|+..| ..|
T Consensus 245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~-t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWi 322 (893)
T KOG0291|consen 245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKG-TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWI 322 (893)
T ss_pred hhhhcceEEEEEEeeeecccccceeeeeccCC-ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEE
Confidence 0011112333444478999999998 7899999999999999999999999998777899999999999 666
Q ss_pred EEEeC-CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748 326 LSGSF-DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404 (502)
Q Consensus 326 ~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~ 404 (502)
+.|+. -|.+.+|+.++...+....+|...+++++++|+|. ++++|++||.|++||.+++ -+..++..|+
T Consensus 323 A~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg---------fC~vTFteHt 392 (893)
T KOG0291|consen 323 AFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG---------FCFVTFTEHT 392 (893)
T ss_pred EEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCc---------eEEEEeccCC
Confidence 66654 58999999999988888889999999999999976 8999999999999999987 8899999999
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC------------------------------------------eeEE
Q 010748 405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ------------------------------------------PSCI 442 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~------------------------------------------~~~~ 442 (502)
..|+.+.|+..+ +.|++.+.||+|+.||+...+ ...+
T Consensus 393 s~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 393 SGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred CceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 999999999998 999999999999999986431 0123
Q ss_pred EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
-.+.+|.+||.+++|+|.+. +|++|+.|.+|++||+-.....
T Consensus 472 DiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 472 DILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred ehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCce
Confidence 34568999999999999999 7999999999999999776443
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.6e-33 Score=245.25 Aligned_cols=277 Identities=20% Similarity=0.376 Sum_probs=231.4
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
....|.|+++ ++..+++|..++ +++||..+.... ...|++|...+ +|+.+ +.+.|++|+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDn---TikiWD~n~~~c-~~~L~GHtGSV-----LCLqy---------d~rviisGSS 255 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDN---TIKIWDKNSLEC-LKILTGHTGSV-----LCLQY---------DERVIVSGSS 255 (499)
T ss_pred cCCceEEEEe--cchhhhcccccC---ceEEeccccHHH-HHhhhcCCCcE-----Eeeec---------cceEEEecCC
Confidence 3456777776 566788898886 678887665432 22455555444 78876 5779999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
|.+|+|||+++++++. .+.+|..+|..+.|+.. +++++|.|.++.|||+.
T Consensus 256 DsTvrvWDv~tge~l~---------------------------tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~ 305 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLN---------------------------TLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMA 305 (499)
T ss_pred CceEEEEeccCCchhh---------------------------HHhhhcceeEEEEEeCC---EEEEecCCceeEEEecc
Confidence 9999999999866544 44589999999999865 89999999999999998
Q ss_pred CCe---eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748 298 AGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 298 ~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d 374 (502)
... +.+.+.+|...|..+.|+. .++++++.|.+|++|++.+...+....+|...|.|+.+.. .++++|+.|
T Consensus 306 sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~---rlvVSGSSD 379 (499)
T KOG0281|consen 306 SPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSD 379 (499)
T ss_pred CchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhccC---eEEEecCCC
Confidence 764 4456789999999999976 5899999999999999999999998899999999999863 489999999
Q ss_pred CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------eEEEEecC
Q 010748 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRNP 447 (502)
Q Consensus 375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-------~~~~~~~~ 447 (502)
.+|++||+..+ .++..+.+|..-|.++.|.. ..+++|+.||+|+|||+..... .|+.....
T Consensus 380 ntIRlwdi~~G---------~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 380 NTIRLWDIECG---------ACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 447 (499)
T ss_pred ceEEEEecccc---------HHHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence 99999999987 88999999999999999985 7899999999999999987532 36677778
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
|.|.|+.+.|..- .+++++.|.+|.|||+..+..-
T Consensus 448 hsgRVFrLQFD~f---qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 448 HSGRVFRLQFDEF---QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccceeEEEeecce---EEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999654 4778889999999999887654
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-31 Score=236.82 Aligned_cols=284 Identities=16% Similarity=0.299 Sum_probs=235.4
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeee-eeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-HHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
..|.+.|.++++.|-+.++++|+.++ +++||.+..+.. .+.. .|... +. .+++|+...||++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~Dr---tikIwDlatg~L---kltltGhi~~-------vr----~vavS~rHpYlFs 210 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADR---TIKIWDLATGQL---KLTLTGHIET-------VR----GVAVSKRHPYLFS 210 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCc---eeEEEEcccCeE---EEeecchhhe-------ee----eeeecccCceEEE
Confidence 56899999999999999999999997 778888877654 2221 12111 11 1233788999999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
++.|+.|+.|||.. .+....+.||-..|+||+.+|. -..|++|+.|.+++||
T Consensus 211 ~gedk~VKCwDLe~---------------------------nkvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEY---------------------------NKVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVW 262 (460)
T ss_pred ecCCCeeEEEechh---------------------------hhhHHHhccccceeEEEecccc-ceeEEecCCcceEEEe
Confidence 99999999999974 3445567799999999999998 5699999999999999
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d 374 (502)
|+++...+..+.+|..+|.++.+.|.+ ..+++|+.|++|++||++.++.......|...+.+++.+|.. +.|++++.|
T Consensus 263 DiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-~~fASas~d 340 (460)
T KOG0285|consen 263 DIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-NLFASASPD 340 (460)
T ss_pred eecccceEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch-hhhhccCCc
Confidence 999999999999999999999999988 679999999999999999999888888999999999999963 456666554
Q ss_pred CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE-Ee--cC---C
Q 010748 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SR--NP---K 448 (502)
Q Consensus 375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~-~~--~~---~ 448 (502)
.|+.|++..+ ..+..+.+|+.-|++++.+.+ .++++|+..|.+.+||.+++...... +. .+ .
T Consensus 341 -nik~w~~p~g---------~f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s 408 (460)
T KOG0285|consen 341 -NIKQWKLPEG---------EFLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES 408 (460)
T ss_pred -cceeccCCcc---------chhhccccccceeeeeeeccC--ceEEEcCCceEEEEEecCcCcccccccccccCCcccc
Confidence 6899999887 667779999999999999986 58999999999999999987521111 11 11 2
Q ss_pred CCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
...|++.+|...+. .|++|..|.+|++|.-
T Consensus 409 EagI~as~fDktg~-rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 409 EAGIFASCFDKTGS-RLITGEADKTIKMYKE 438 (460)
T ss_pred ccceeEEeecccCc-eEEeccCCcceEEEec
Confidence 34689999999998 5999999999999974
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-32 Score=241.17 Aligned_cols=244 Identities=21% Similarity=0.300 Sum_probs=220.6
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|+|+-.++++++.|++|++||+.+++. ...++||++.|..|+|+.. +.+|++
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~---------------------------e~~LrGHt~sv~di~~~a~-Gk~l~t 167 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGEL---------------------------ERSLRGHTDSVFDISFDAS-GKYLAT 167 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhh---------------------------hhhhhccccceeEEEEecC-ccEEEe
Confidence 378899999999999999999987544 3356799999999999998 569999
Q ss_pred EecCCcEEEEeCCC-CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748 285 ASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 285 gs~dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 363 (502)
+|.|-.+++||..+ .++++.+.+|...|.++.|-|.| .++++++.|.+|+.|++.++-++..+.+|...|..+..+.+
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD 246 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence 99999999999987 57888889999999999999999 99999999999999999999998888899999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC--------------CCCEEEEEeCCCcE
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------------VPNLLATGSTDKMV 429 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--------------~~~~l~t~s~dg~i 429 (502)
|. ++++++.|.+|++|-+.+. .+...+..|..+|-+++|.|. +..++++++.|++|
T Consensus 247 Gt-i~As~s~dqtl~vW~~~t~---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 247 GT-IIASCSNDQTLRVWVVATK---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred ee-EEEecCCCceEEEEEeccc---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 75 8999999999999999986 677788889999999999762 22599999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
++||+.++. +++++.+|...|..++|+|.|+| |+++..|+++++||+.+..++.....
T Consensus 317 k~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 317 KIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred EEEeccCCe--EEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceeeeccCC
Confidence 999999997 89999999999999999999997 88889999999999999999877653
No 41
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-31 Score=243.06 Aligned_cols=286 Identities=22% Similarity=0.316 Sum_probs=226.8
Q ss_pred CccccccccccCCCce-EEEEEecCCcceeEEEEEecCCCCCCC-eeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 138 DSEDLEDMTINPNDAV-IVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~-l~~~~~~~~~~~l~v~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
+.+.|.+++|+|...+ +|++++- ++-+|......... +....+.. .. +.|..||.+||+|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~------rvqly~~~~~~~~k~~srFk~~v-----~s-------~~fR~DG~LlaaG 86 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSV------RVQLYSSVTRSVRKTFSRFKDVV-----YS-------VDFRSDGRLLAAG 86 (487)
T ss_pred ccCcceeEecCCCCCCceEEeccc------EEEEEecchhhhhhhHHhhccce-----eE-------EEeecCCeEEEcc
Confidence 4578999999998765 3444322 55555544321111 11122111 12 2236799999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
...|.|+|||+.+ ......+.+|+.+|..+.|+|.+..+|++|+.|+.+++||
T Consensus 87 D~sG~V~vfD~k~---------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 87 DESGHVKVFDMKS---------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred CCcCcEEEecccc---------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 9999999999643 3445567799999999999999889999999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg 375 (502)
+.+......+.+|++.|.|.+|+|..+++++||++||.|++||+|..........|..+|.++.+-|.|. ++++++ ..
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~iasAg-Gn 217 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIASAG-GN 217 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEEcC-CC
Confidence 9999887789999999999999999988999999999999999999876666789999999999999765 455544 56
Q ss_pred cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 455 (502)
.|++||+.++ .+.+..+..|...|+|+++..++ ..|++|+-|+.|++||+.+.+ .+.... -.++|.++
T Consensus 218 ~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~K--vv~s~~-~~~pvLsi 285 (487)
T KOG0310|consen 218 SVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYK--VVHSWK-YPGPVLSI 285 (487)
T ss_pred eEEEEEecCC--------ceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceE--EEEeee-cccceeeE
Confidence 8999999987 46666666799999999999987 999999999999999987776 344333 45899999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 456 AFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 456 ~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
+.+|+++ .++.|..+|.+.+=+....+
T Consensus 286 avs~dd~-t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 286 AVSPDDQ-TVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EecCCCc-eEEEecccceeeeehhhccc
Confidence 9999998 58889999988777544433
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4e-32 Score=238.98 Aligned_cols=289 Identities=16% Similarity=0.271 Sum_probs=242.2
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeee--ccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH--HIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
....++|..|+|+|++|++|+.++ .++||.|-.+.-+.-.-|.-. -.+.....+|+.+ |.+...||+|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDG---FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-------SRDsEMlAsG 281 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDG---FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-------SRDSEMLASG 281 (508)
T ss_pred cccchhheeeCCCCceEeeccccc---eeeeehhccchhhhhhhhhhhcceeecccceEEEee-------cccHHHhhcc
Confidence 346789999999999999999997 899999987654322223221 1223444578766 8899999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+.||.|+||.+.++.++..+ -..|+..|+|++|+.++ ..+++++.|.++++.-
T Consensus 282 sqDGkIKvWri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHG 334 (508)
T ss_pred CcCCcEEEEEEecchHHHHh--------------------------hhhhccCeeEEEEccCc-chhhcccccceEEEec
Confidence 99999999999998876542 23799999999999994 5788999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--ecCCeeEEEeCCCCCCEEEEEeC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~ 373 (502)
+.+|+++..|++|++.|+...|.++| +.+++++.||+|++|+..+..+...+.. ...+|.++-.-|.++..++++..
T Consensus 335 lKSGK~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 335 LKSGKCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred cccchhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence 99999999999999999999999999 8999999999999999999888764443 34578899999988889999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCccceEEecc---CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010748 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 450 (502)
Q Consensus 374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 450 (502)
.++|++.++.. +.+.++... .+...+...+|.| .++++.+.|+.++.|.+.+++ +-.++..|..
T Consensus 414 sntv~imn~qG----------QvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~--LE~tl~VhEk 480 (508)
T KOG0275|consen 414 SNTVYIMNMQG----------QVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGK--LERTLPVHEK 480 (508)
T ss_pred CCeEEEEeccc----------eEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCc--eeeeeecccc
Confidence 99999999874 455555433 3456677789998 999999999999999999998 5667777888
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 451 AVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
.|..++-+|... +||+-+.||.+++|.
T Consensus 481 dvIGl~HHPHqN-llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQN-LLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccc-hhhhhcccchhhhcC
Confidence 899999999988 799999999999995
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=244.65 Aligned_cols=231 Identities=26% Similarity=0.462 Sum_probs=204.1
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748 193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
.+|+++ +...+++|..|.+|+|||.++.. ....+.||++.|.||
T Consensus 200 VYClQY---------DD~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHtGSVLCL 243 (499)
T KOG0281|consen 200 VYCLQY---------DDEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHTGSVLCL 243 (499)
T ss_pred eEEEEe---------cchhhhcccccCceEEeccccHH---------------------------HHHhhhcCCCcEEee
Confidence 367765 67789999999999999987633 334567999999999
Q ss_pred EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc---cceE
Q 010748 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKW 349 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~ 349 (502)
.|... +|++||.|.+|+|||+++++++.++.+|...|..+.|+. .++++++.|.++.+||+.++... ..+.
T Consensus 244 qyd~r---viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLv 317 (499)
T KOG0281|consen 244 QYDER---VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLV 317 (499)
T ss_pred eccce---EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHh
Confidence 99743 999999999999999999999999999999999999985 58999999999999999987643 3356
Q ss_pred eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
+|...|+.+.|+. .++++++.|.+|++|++.+. ..+.++.+|...|.|+.+. ++++++|+.|.+|
T Consensus 318 GHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr---~rlvVSGSSDntI 382 (499)
T KOG0281|consen 318 GHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTI 382 (499)
T ss_pred hhhhheeeecccc---ceEEEecCCceEEEEeccce---------eeehhhhcccccceehhcc---CeEEEecCCCceE
Confidence 8889999999975 38999999999999999997 8899999999999999987 3899999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
++||+..+. ++..+.+|..-|.|+.|... .+++|+.||+|+|||+.++...
T Consensus 383 Rlwdi~~G~--cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 383 RLWDIECGA--CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred EEEeccccH--HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence 999999998 78888999999999999765 4899999999999999876543
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=1.6e-30 Score=260.51 Aligned_cols=250 Identities=26% Similarity=0.421 Sum_probs=213.1
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
.|+++|++|++++.++.|++|++..... .....+.+|...|.+++|+|+ +.+++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~~~v~~~~fs~d-~~~l~ 219 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHTRGVSDVAFSPD-GSYLL 219 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccccceeeeEECCC-CcEEE
Confidence 3489999999999999999999954321 122233689999999999999 55999
Q ss_pred EEecCCcEEEEeC-CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 284 SASADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 284 sgs~dg~v~vwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
+|+.|++|+|||+ ..+++++++.+|...|++++|+|.+ +++++|+.|++|++||++++++...+..|...|++++|++
T Consensus 220 s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 220 SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 9999999999999 5568999999999999999999999 9999999999999999999888888889999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
++. ++++++.||.|++||+.++.. .++..+..+... ++++.|+|++ .++++++.|+.+++||+....
T Consensus 299 d~~-~l~s~s~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~-- 367 (456)
T KOG0266|consen 299 DGN-LLVSASYDGTIRVWDLETGSK-------LCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK-- 367 (456)
T ss_pred CCC-EEEEcCCCccEEEEECCCCce-------eeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc--
Confidence 876 788889999999999998721 034556665554 9999999998 999999999999999999887
Q ss_pred EEEEecCCCC---cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748 441 CIASRNPKAG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 441 ~~~~~~~~~~---~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
+.....+|.. .+.+...++.+.+ +++|+.|+.|++|++.++..+.+.-++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGHS 421 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCCC
Confidence 5556666655 4455566788884 9999999999999999988887777773
No 45
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=3.2e-30 Score=219.34 Aligned_cols=282 Identities=17% Similarity=0.263 Sum_probs=223.2
Q ss_pred ccccccCcccceeccCCCCCCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccc
Q 010748 109 GVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII 188 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~ 188 (502)
.+.+|....|..+....- .+..|+.+.+.|++++||+|+.. ++++|.++........-|..|..-
T Consensus 21 TIRfWqa~tG~C~rTiqh-----------~dsqVNrLeiTpdk~~LAaa~~q----hvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQH-----------PDSQVNRLEITPDKKDLAAAGNQ----HVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred eeeeeehhcCeEEEEEec-----------CccceeeEEEcCCcchhhhccCC----eeEEEEccCCCCCceeEEeccCCc
Confidence 455666666666544321 35689999999999999999877 478887777665322223333211
Q ss_pred cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748 189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268 (502)
Q Consensus 189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 268 (502)
+ ..+ +|..+|+++++|+.||+++|||+....+.+ ...|..+
T Consensus 86 V----taV-------gF~~dgrWMyTgseDgt~kIWdlR~~~~qR----------------------------~~~~~sp 126 (311)
T KOG0315|consen 86 V----TAV-------GFQCDGRWMYTGSEDGTVKIWDLRSLSCQR----------------------------NYQHNSP 126 (311)
T ss_pred e----EEE-------EEeecCeEEEecCCCceEEEEeccCcccch----------------------------hccCCCC
Confidence 1 233 336789999999999999999997532221 2257899
Q ss_pred eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---
Q 010748 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--- 344 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--- 344 (502)
|+++..+|+ ..-|++|..+|.|++||+.+..+.+.+. .....|+++...|+| .+|+.+...|.+++|++-....
T Consensus 127 Vn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 127 VNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred cceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcccc
Confidence 999999999 5689999999999999999988777663 345689999999999 8999999999999999876432
Q ss_pred ---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748 345 ---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421 (502)
Q Consensus 345 ---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 421 (502)
+..+..|.+.+..+.++|++. ++++++.|.+++||+.... .+.-..+.+|...+...+||.++ .+|+
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~--------~kle~~l~gh~rWvWdc~FS~dg-~Ylv 274 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF--------FKLELVLTGHQRWVWDCAFSADG-EYLV 274 (311)
T ss_pred ceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc--------eeeEEEeecCCceEEeeeeccCc-cEEE
Confidence 223456788899999999865 8999999999999999876 36677889999999999999998 9999
Q ss_pred EEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
||+.|+.+++|++..++ .+....+|.....|++..
T Consensus 275 Tassd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 275 TASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCCCceeecccccCc--eeeecCCcccccEEEEee
Confidence 99999999999999998 567778887777777653
No 46
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.1e-30 Score=248.17 Aligned_cols=280 Identities=22% Similarity=0.377 Sum_probs=231.4
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 221 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I 221 (502)
.+=+.|+ ..+.|++|... .||.|+...+ .+...++.. ...++++.| +++|++||+|..+|.|
T Consensus 180 ~nlldWs-s~n~laValg~------~vylW~~~s~---~v~~l~~~~-~~~vtSv~w-------s~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQ------SVYLWSASSG---SVTELCSFG-EELVTSVKW-------SPDGSHLAVGTSDGTV 241 (484)
T ss_pred hhHhhcc-cCCeEEEEecc------eEEEEecCCC---ceEEeEecC-CCceEEEEE-------CCCCCEEEEeecCCeE
Confidence 4556777 67788888654 7888888776 333333222 555678888 7899999999999999
Q ss_pred EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccC-cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300 (502)
Q Consensus 222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~ 300 (502)
.|||....... ..+.+ |...|.+|+|+. ..+.+|+.++.|..+|++..+
T Consensus 242 ~iwD~~~~k~~---------------------------~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 242 QIWDVKEQKKT---------------------------RTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred EEEehhhcccc---------------------------ccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecch
Confidence 99998643222 22334 999999999994 489999999999999999887
Q ss_pred eeEe-eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEE--eCCCcE
Q 010748 301 CNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS--LEDGTI 377 (502)
Q Consensus 301 ~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--~~dg~v 377 (502)
.... +.+|...|+.++|++++ .+|++|+.|+.+.|||............|.+.|.+++|+|....+|++| +.|++|
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 6555 88999999999999999 9999999999999999988888888889999999999999998899987 579999
Q ss_pred EEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
++||..++ ..+..+. ....|++|.|++....++.+.+ .++.|.||++.+.+ .+..+.+|...|..++
T Consensus 371 ~fwn~~~g---------~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 371 KFWNTNTG---------ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLA 438 (484)
T ss_pred EEEEcCCC---------cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEE
Confidence 99999986 4444443 4567999999998755555543 47789999999876 6888899999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 457 FSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 457 ~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
++|||.+ +++|+.|.++++|++-...
T Consensus 439 ~SPdg~~-i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 439 LSPDGET-IVTGAADETLRFWNLFDER 464 (484)
T ss_pred ECCCCCE-EEEecccCcEEeccccCCC
Confidence 9999995 9999999999999997753
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.4e-30 Score=256.09 Aligned_cols=288 Identities=16% Similarity=0.297 Sum_probs=236.8
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
....|..++|||...+|+++-..+ .+++|.|.-... ..-+-.|+.++.+ +. |+|.+.++++|+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG---~IQlWDYRM~tl--i~rFdeHdGpVRg----v~-------FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSG---VIQLWDYRMGTL--IDRFDEHDGPVRG----VD-------FHPTQPLFVSGGD 71 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCc---eeeeehhhhhhH--HhhhhccCCccce----ee-------ecCCCCeEEecCC
Confidence 456789999999999999998887 778888875542 1334566666533 33 3899999999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
|-.|+||++.. .+....+.||-+-|..+.|++.. .+++|+|.|.+|+||+..
T Consensus 72 DykIkVWnYk~---------------------------rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 72 DYKIKVWNYKT---------------------------RRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred ccEEEEEeccc---------------------------ceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEecc
Confidence 99999999975 44455677999999999999994 599999999999999999
Q ss_pred CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-----------------------------ccce
Q 010748 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-----------------------------SGFK 348 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------------~~~~ 348 (502)
+++|+..+.+|+..|.|.+|+|.. .+++++|.|.+|++||+..-+. ....
T Consensus 124 sr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 124 SRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred CCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999999999999999999988 8999999999999999863110 0112
Q ss_pred EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
.+|...|+-++|+|.-+ ++++|+.|..|++|.+...+. --+-+..+|...|+++-|+|.. .++++.|.|++
T Consensus 203 EGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDks 273 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKS 273 (1202)
T ss_pred cccccccceEEecCCcc-eEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc-ceeEecCCCcc
Confidence 35677899999999877 899999999999999876421 3345567999999999999987 89999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
|+|||+...+ .+.++....+..+.++-+|... ++| ++.|+.+.||.+....
T Consensus 274 irVwDm~kRt--~v~tfrrendRFW~laahP~lN-LfA-AgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 274 IRVWDMTKRT--SVQTFRRENDRFWILAAHPELN-LFA-AGHDSGMIVFKLERER 324 (1202)
T ss_pred EEEEeccccc--ceeeeeccCCeEEEEEecCCcc-eee-eecCCceEEEEEcccC
Confidence 9999998877 5667766678899999999998 566 5567777888776443
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.7e-31 Score=251.26 Aligned_cols=240 Identities=20% Similarity=0.337 Sum_probs=215.5
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|...+++++-..|.|.|||.++...+.. +.-..-+|.+..|-+- .+++++|
T Consensus 22 HPtePw~la~LynG~V~IWnyetqtmVks---------------------------feV~~~PvRa~kfiaR-knWiv~G 73 (794)
T KOG0276|consen 22 HPTEPWILAALYNGDVQIWNYETQTMVKS---------------------------FEVSEVPVRAAKFIAR-KNWIVTG 73 (794)
T ss_pred CCCCceEEEeeecCeeEEEecccceeeee---------------------------eeecccchhhheeeec-cceEEEe
Confidence 78899999999999999999987544433 3335578889999887 7899999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeCCCC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~ 364 (502)
+.|..|+||+.+++..++.|..|.+.|.|++.||.. .+++++|.|-+|++||....-. .+.+.+|..-|.+++|+|..
T Consensus 74 sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred cCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC
Confidence 999999999999999999999999999999999999 7899999999999999987643 44456888999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC-CCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
.+.|++++-|++|++|.+.+. .+.+++.+|...|+|+.|-+-+ .-+|+||+.|.+|+|||..+.. |+.
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~--CV~ 221 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS--CVQ 221 (794)
T ss_pred ccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--HHH
Confidence 999999999999999999886 7899999999999999999854 2499999999999999999987 899
Q ss_pred EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~ 486 (502)
++.+|...|..+.|+|.-+ ++++|+.||+++||+..+-+.-.
T Consensus 222 TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred HhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh
Confidence 9999999999999999999 79999999999999998866543
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.3e-31 Score=258.48 Aligned_cols=254 Identities=19% Similarity=0.356 Sum_probs=222.6
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
++|+|...+++++-..|.|++||..- ......|..|.++|..+.|+|. +.++
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM---------------------------~tli~rFdeHdGpVRgv~FH~~-qplF 66 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRM---------------------------GTLIDRFDEHDGPVRGVDFHPT-QPLF 66 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhh---------------------------hhHHhhhhccCCccceeeecCC-CCeE
Confidence 34589999999999999999999863 3444567789999999999999 5699
Q ss_pred EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
+||+.|..|+||+..+.+|+.++.+|-+.|..+.||+.- ..++++|.|.+|+||+..+.+++....+|..-|.|.+|+|
T Consensus 67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred EecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence 999999999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCC--------------------CccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS--------------------QQSSFTLHAHDKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~--------------------~~~~~~~~~h~~~v~~l~~sp~~~~~l~t 422 (502)
... ++++++-|.+|++||+...+.....+. ....+.+.+|...|+-++|+|.- -+|++
T Consensus 146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVS 223 (1202)
T KOG0292|consen 146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVS 223 (1202)
T ss_pred ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEe
Confidence 644 899999999999999865432111100 11235567999999999999987 79999
Q ss_pred EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
|+.|..|++|.+...+...+-+..+|.+.|.++-|+|... ++++.|.|++|+|||+.....+.+.
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeee
Confidence 9999999999999888777788899999999999999887 7999999999999999988877654
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=255.57 Aligned_cols=265 Identities=20% Similarity=0.317 Sum_probs=198.7
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCC--------------------cCcceecC-Ccchh----h--------hhhcc
Q 010748 204 KDREKGNFMAVGSMEPAIEIWDLDVIDE--------------------VQPHVILG-GIDEE----K--------KKKKS 250 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~--------------------~~~~~~l~-~~~~~----~--------~~~~~ 250 (502)
.||++|+|||+||.|+.|+||.+-..+. ..|...-. ..... . .....
T Consensus 274 KFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~ 353 (712)
T KOG0283|consen 274 KFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLK 353 (712)
T ss_pred EeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCc
Confidence 3499999999999999999999854110 00000000 00000 0 00000
Q ss_pred ccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC
Q 010748 251 KKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF 330 (502)
Q Consensus 251 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~ 330 (502)
...-..++...+.||.+.|+.|+|+.+ ++|+|+|.|.||+||++....|++.|. |.+.|+|++|+|.+.++|++|+.
T Consensus 354 ~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 354 AFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred cccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccc
Confidence 001123445567899999999999987 489999999999999999999999997 99999999999999899999999
Q ss_pred CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc------C
Q 010748 331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------D 404 (502)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h------~ 404 (502)
||.|+||++...+... -.....-|++++|.|+|. ..++|+-+|.+++|+....+. ..-..+..| .
T Consensus 431 D~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~-------~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKL-------VSDFHIRLHNKKKKQG 501 (712)
T ss_pred ccceEEeecCcCeeEe-ehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeE-------EEeeeEeeccCccccC
Confidence 9999999998766543 224557799999999976 899999999999999987632 111122222 2
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+.|+++.|.|..+..+++.+.|..|||||.++..+.+.+.-......-....|+.||.| |++++.|..|+||++..
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDS 577 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCC
Confidence 37999999998777788889999999999988775444443333445567899999997 78888999999999844
No 51
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.8e-29 Score=249.55 Aligned_cols=255 Identities=18% Similarity=0.206 Sum_probs=193.1
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
++++..+++++.+.....|+...+..+.+....| +.......+.+|.+.|++++|+|..+++|++|
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G--------------~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG--------------KLASNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccc--------------cCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 4566666777777777788765433222211111 11111234668999999999999436799999
Q ss_pred ecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748 286 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 286 s~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 358 (502)
+.|++|++||+.++ .++..+.+|...|.+++|+|.+.++|++|+.|++|++||++++........|...|.++
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 99999999999765 35678899999999999999876799999999999999999887666555688899999
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC-eeEEEEcCCCCCEEEEEe----CCCcEEEEE
Q 010748 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISYNPLVPNLLATGS----TDKMVKLWD 433 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~l~t~s----~dg~i~vwd 433 (502)
+|+|++. ++++++.||.|++||++++ ..+..+.+|.+. +..+.|.+.+ .++++++ .|+.|++||
T Consensus 175 a~spdG~-lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 175 EWNLDGS-LLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred EEECCCC-EEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEe
Confidence 9999865 8999999999999999986 667788888765 4567888877 5555544 478999999
Q ss_pred CCCCCeeEEEEec-CCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCccccc
Q 010748 434 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 434 ~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~ll~sg~-~dg~i~vwd~~~~~~~~~ 487 (502)
+++... .+.... .+...+....|++++.+ |++|+ .|+.|++||+.++..+..
T Consensus 244 lr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 244 TRKMAS-PYSTVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCCCC-ceeEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCCceEEE
Confidence 987642 222222 23345667789999985 65555 699999999998886654
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.8e-29 Score=268.07 Aligned_cols=252 Identities=20% Similarity=0.322 Sum_probs=204.7
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
.+++| +|+|++||+|+.|+.|+||++........ ........+ .+...|.+++
T Consensus 487 ~~i~f-------s~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l~ 539 (793)
T PLN00181 487 CAIGF-------DRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGIC 539 (793)
T ss_pred EEEEE-------CCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeEE
Confidence 56666 79999999999999999999863210000 000011112 2346899999
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 353 (502)
|++..+.+|++|+.||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||+|++||+++...... .....
T Consensus 540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-~~~~~ 618 (793)
T PLN00181 540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-IKTKA 618 (793)
T ss_pred eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE-EecCC
Confidence 99876779999999999999999999999999999999999999985448999999999999999998766543 33456
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+.++.|++..+.++++|+.||.|++||+++. ..++..+.+|...|+++.|.+ + .+|++++.|++|++||
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~--------~~~~~~~~~h~~~V~~v~f~~-~-~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNP--------KLPLCTMIGHSKTVSYVRFVD-S-STLVSSSTDNTLKLWD 688 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--------CccceEecCCCCCEEEEEEeC-C-CEEEEEECCCEEEEEe
Confidence 89999997665668999999999999999876 245677889999999999974 4 7899999999999999
Q ss_pred CCCCC----eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 434 LSNNQ----PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 434 ~~~~~----~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
++... ..++..+.+|...+.+++|+|++. +|++|+.||.|++|+......
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCc
Confidence 97531 235677889999999999999998 599999999999999876543
No 53
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.6e-29 Score=232.74 Aligned_cols=267 Identities=21% Similarity=0.375 Sum_probs=214.5
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC---------CeeeeeccccCCCcceeeeecCCCCCCC
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP---------NLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 207 (502)
.|+++|+.+.+.|+...|+++.+.+ +.+.||.|........ .|.+|+. .+ +.+.|.. .
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~--~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~---eg--~glsWn~------~ 188 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSS--GDVYVFDYTKHPSKPKASGECRPDLRLKGHEK---EG--YGLSWNR------Q 188 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCC--CCEEEEEeccCCCcccccccCCCceEEEeecc---cc--ccccccc------c
Confidence 3889999999999999888876655 2456666654443221 3456665 12 3466731 2
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
..-+|++|+.|+.|++||+...... .+.......+.+|...|..++|++....+|++++.
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~--------------------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKE--------------------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccC--------------------CccccceEEeecCCcceehhhccccchhhheeecC
Confidence 4668999999999999999754321 12244556778999999999999998999999999
Q ss_pred CCcEEEEeCC--CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc-cceEeecCCeeEEEeCCCC
Q 010748 288 DKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 288 dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~ 364 (502)
|+.+.|||++ +.++.+...+|++.|.|++|+|.+..+|||||.|++|++||+|..... ..+..|...|.+|.|+|+.
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999999999 567778889999999999999999899999999999999999986654 3455789999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCC-----CCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
..++++++.|+.+.+||+....... ......+++.-.+|...|+.+.|+|+.+..|++.+.|+.+.||.+..
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999999999997653321 11223556788899999999999999999999999999999999864
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.7e-30 Score=216.62 Aligned_cols=235 Identities=23% Similarity=0.392 Sum_probs=198.4
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+-+|+|.++++.|.+|++|+.-. ......+.+|...|..++.+.+ ...|++|
T Consensus 26 N~dGnY~ltcGsdrtvrLWNp~r---------------------------g~liktYsghG~EVlD~~~s~D-nskf~s~ 77 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDRTVRLWNPLR---------------------------GALIKTYSGHGHEVLDAALSSD-NSKFASC 77 (307)
T ss_pred ccCCCEEEEcCCCceEEeecccc---------------------------cceeeeecCCCceeeecccccc-ccccccC
Confidence 67899999999999999999854 3344466799999999999998 5689999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC--ccceEeecCCeeEEEeCCC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~ 363 (502)
+.|..|.+||+.+|+.++.|.+|.+.|+.++|+... ..+++|+.|.++++||.|+... ++.+-.....|.++..+.
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~- 155 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE- 155 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-
Confidence 999999999999999999999999999999999988 8999999999999999997654 444445677899998875
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
..+++|+.||+++.||+|.+. . ...-...+|++++|++++ ++.++++.|+++++.|-.+++ .+.
T Consensus 156 --heIvaGS~DGtvRtydiR~G~---------l--~sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk--lL~ 219 (307)
T KOG0316|consen 156 --HEIVAGSVDGTVRTYDIRKGT---------L--SSDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK--LLK 219 (307)
T ss_pred --cEEEeeccCCcEEEEEeecce---------e--ehhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhH--HHH
Confidence 379999999999999999872 1 122245689999999998 999999999999999999998 566
Q ss_pred EecCCCCcEE--EEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 444 SRNPKAGAVF--SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 444 ~~~~~~~~v~--~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
.+.+|...=+ .++++.... .+++|+.||.|++||+.....+..
T Consensus 220 sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred Hhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccceeeee
Confidence 6777765443 445666556 489999999999999988776654
No 55
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-28 Score=205.23 Aligned_cols=292 Identities=21% Similarity=0.309 Sum_probs=229.7
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---------CCCCee----eeeccccCCCcceeeeecCCCC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---------GDPNLY----VHHHIIIPAFPLCMAWLDCPLK 204 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---------~~~~l~----~~~~~~~~~~~~~~~~~~~~~~ 204 (502)
+...|.++.|+|.|.+.++|++.. +++|.-|..-.. ..+.+. .||.. -.+|++|
T Consensus 31 dsqairav~fhp~g~lyavgsnsk---t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkg----siyc~~w------ 97 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSK---TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKG----SIYCTAW------ 97 (350)
T ss_pred chhheeeEEecCCCceEEeccCCc---eEEEEccccccCcccccccccCCCeEEeeeccccCc----cEEEEEe------
Confidence 456899999999999999999886 678877754332 111222 24433 3489999
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC---CCcE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNI 281 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~ 281 (502)
||.|.+||+|+.|.+|++.-++...+.. ......+.-|.+.|..++|..+ ++.+
T Consensus 98 -s~~geliatgsndk~ik~l~fn~dt~~~----------------------~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 98 -SPCGELIATGSNDKTIKVLPFNADTCNA----------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred -cCccCeEEecCCCceEEEEecccccccc----------------------cCcceeeeecCCceeeeEEecCCCcCceE
Confidence 7899999999999999998765322211 1122345579999999999643 4557
Q ss_pred EEEEec-CCcEEEEeCCCCeeeEeeccCCCCeEEE-EEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe-------ec
Q 010748 282 LASASA-DKQVKIWDVAAGKCNLTLEHHTDKVQAV-AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VA 352 (502)
Q Consensus 282 l~sgs~-dg~v~vwd~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~ 352 (502)
|++++. |..|++-|..+|+..+.+.+|++.|.++ .|+ + -.+++|+.|.+|++||+|-+.++...-. ..
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence 888765 6678888999999999999999999887 343 4 7899999999999999998776543221 13
Q ss_pred CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
+.|.+++..|.|. ++++|..|....+||+|.+ .+++.+..|+..|.|+.|+|.. .+|+||+.|..|++-
T Consensus 232 savaav~vdpsgr-ll~sg~~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~iklt 300 (350)
T KOG0641|consen 232 SAVAAVAVDPSGR-LLASGHADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLT 300 (350)
T ss_pred ceeEEEEECCCcc-eeeeccCCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEe
Confidence 5689999999875 8999999999999999987 8899999999999999999976 999999999999999
Q ss_pred ECCCCC--eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 433 DLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 433 d~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
|+...- ...+.....|...+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 987531 234555567888899999999875 48888999999999763
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.1e-28 Score=230.25 Aligned_cols=314 Identities=15% Similarity=0.219 Sum_probs=250.4
Q ss_pred ccCCCCCCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecC
Q 010748 122 YASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC 201 (502)
Q Consensus 122 ~~~~~~d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 201 (502)
|..+-++|.....-.+|...++-..|+|.|-++|+|-..+ .++||.....+ .+..+.-.++.+....++|
T Consensus 42 ~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG---~vRIWdtt~~~----hiLKnef~v~aG~I~Di~W--- 111 (603)
T KOG0318|consen 42 IIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSG---KVRIWDTTQKE----HILKNEFQVLAGPIKDISW--- 111 (603)
T ss_pred EEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcC---cEEEEeccCcc----eeeeeeeeeccccccccee---
Confidence 3334444544444467999999999999999999998877 45666665443 5555555666666677778
Q ss_pred CCCCCCCCCEEEEecCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC
Q 010748 202 PLKDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE 277 (502)
Q Consensus 202 ~~~~s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~ 277 (502)
+.++++|++.+.. |.+.+||- +..+. .+.+|...|++++|-|.
T Consensus 112 ----d~ds~RI~avGEGrerfg~~F~~DS--G~SvG---------------------------ei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 112 ----DFDSKRIAAVGEGRERFGHVFLWDS--GNSVG---------------------------EITGHSRRINSVDFKPS 158 (603)
T ss_pred ----CCCCcEEEEEecCccceeEEEEecC--CCccc---------------------------eeeccceeEeeeeccCC
Confidence 7888887776543 45566664 33222 34589999999999999
Q ss_pred CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE---eecCC
Q 010748 278 FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAAD 354 (502)
Q Consensus 278 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~ 354 (502)
.+..+++|+.|++|.+|.-.--+...+++.|+..|+|+.|+|+| .+|++++.||++.+||-.++.....+. .|.+.
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs 237 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS 237 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCcccc
Confidence 78899999999999999977778888899999999999999999 899999999999999999998876655 78999
Q ss_pred eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCC----------------------------------CCCCCCccceEE
Q 010748 355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD----------------------------------PDSTSQQSSFTL 400 (502)
Q Consensus 355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~----------------------------------~~~~~~~~~~~~ 400 (502)
|.+++|+|++. .|++++.|.++++||+.+.... .+.....++..+
T Consensus 238 IfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i 316 (603)
T KOG0318|consen 238 IFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI 316 (603)
T ss_pred EEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee
Confidence 99999999876 7999999999999999876430 011112466778
Q ss_pred eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 401 ~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
.+|...|+++..+|++ .+|++|+.||.|.-|+..++.. ....-.+|...|.+++.+..+. |.+.|.|.++++.++.
T Consensus 317 ~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~-~~~~g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 317 SGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTS-DRLAGKGHTNQIKGMAASESGE--LFTIGWDDTLRVISLK 392 (603)
T ss_pred cccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccc-cccccccccceEEEEeecCCCc--EEEEecCCeEEEEecc
Confidence 8999999999999998 9999999999999999998863 2233367889999999988775 6778999999999886
Q ss_pred CCcc
Q 010748 481 SDAG 484 (502)
Q Consensus 481 ~~~~ 484 (502)
.+..
T Consensus 393 ~~~~ 396 (603)
T KOG0318|consen 393 DNGY 396 (603)
T ss_pred cCcc
Confidence 5443
No 57
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.4e-29 Score=213.67 Aligned_cols=234 Identities=25% Similarity=0.417 Sum_probs=197.5
Q ss_pred CCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 206 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 206 s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
+|. |..||+|+.|..|+||++..++...-..+ .-.+|+..|++++|+|.+ ++||+
T Consensus 23 hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v-----------------------ld~~hkrsVRsvAwsp~g-~~La~ 78 (312)
T KOG0645|consen 23 HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV-----------------------LDDGHKRSVRSVAWSPHG-RYLAS 78 (312)
T ss_pred ccCCceEEEeecCCceEEEEecCCCCcEEEEEe-----------------------ccccchheeeeeeecCCC-cEEEE
Confidence 566 88999999999999999875443332222 223799999999999995 59999
Q ss_pred EecCCcEEEEeCCCC--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC---CccceEeecCCeeEEE
Q 010748 285 ASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLA 359 (502)
Q Consensus 285 gs~dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~ 359 (502)
||.|.++.||.-..+ +++.++.+|...|.|++|+++| ++|++++.|+.|-||.+.... +...+..|...|..+.
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 999999999986544 7899999999999999999999 999999999999999988543 4556678999999999
Q ss_pred eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
|+|.. .+|++++-|.+|++|.-..... ..++.++.+|...|.+++|+|.| ..|++++.|++|+||-+...-
T Consensus 158 WHPt~-dlL~S~SYDnTIk~~~~~~ddd------W~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 158 WHPTE-DLLFSCSYDNTIKVYRDEDDDD------WECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL- 228 (312)
T ss_pred EcCCc-ceeEEeccCCeEEEEeecCCCC------eeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc-
Confidence 99964 4899999999999998763211 57899999999999999999998 899999999999999865321
Q ss_pred eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
...|...++.+.|. ++ +||+++.|+.|+||.-..
T Consensus 229 -----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 229 -----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD 262 (312)
T ss_pred -----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence 23467889999999 55 699999999999998764
No 58
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.9e-28 Score=245.59 Aligned_cols=229 Identities=22% Similarity=0.302 Sum_probs=180.3
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
|+..+.|++|++... .....+.+|...|++++|+|..+++||||+.||+|+||
T Consensus 50 GG~~gvI~L~~~~r~---------------------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIW 102 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---------------------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVW 102 (568)
T ss_pred CCceeEEEeeecCCC---------------------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Confidence 566788888887531 22335568999999999999766799999999999999
Q ss_pred eCCCCe--------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748 295 DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 295 d~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 366 (502)
|+.++. ++..+.+|...|.+++|+|.+..+|++++.|++|++||++++.... ...+...|.+++|+|++.
T Consensus 103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~~~~~V~SlswspdG~- 180 (568)
T PTZ00420 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QINMPKKLSSLKWNIKGN- 180 (568)
T ss_pred ECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEecCCcEEEEEECCCCC-
Confidence 997642 3456788999999999999985667899999999999999877543 334667899999999876
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE-----EEcCCCCCEEEEEeCCC----cEEEEECCC-
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-----SYNPLVPNLLATGSTDK----MVKLWDLSN- 436 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-----~~sp~~~~~l~t~s~dg----~i~vwd~~~- 436 (502)
+|++++.|+.|++||++++ ..+..+.+|.+.+.+. .|++++ .+|++++.++ .|+|||++.
T Consensus 181 lLat~s~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEEEecCCEEEEEECCCC---------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC
Confidence 7888899999999999987 6677888998765433 345776 7888877764 799999995
Q ss_pred CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
.++.....+..+.+.+......+++. ++++|+.|+.|++|++..+.
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCc
Confidence 45544555555556555555555666 68899999999999998764
No 59
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=232.31 Aligned_cols=291 Identities=23% Similarity=0.317 Sum_probs=221.9
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCC--eeeeecccc-------CCCcceeeeecCCCC
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPN--LYVHHHIII-------PAFPLCMAWLDCPLK 204 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~--l~~~~~~~~-------~~~~~~~~~~~~~~~ 204 (502)
.|.-.+.++.++|++.+++.++.++ +|.-|....+... .+. +...|-.++ ..-.+|++.
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g---~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av------ 210 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDG---TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV------ 210 (479)
T ss_pred cccCcceEEEeeccccceeecCCCc---ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE------
Confidence 4778899999999999999999887 3333333332210 000 000010000 011244443
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|++|+|||+|+.|..|.||+.++.+.+ ..+.+|.+.|.+++|-.. .+.|++
T Consensus 211 -S~Dgkylatgg~d~~v~Iw~~~t~ehv---------------------------~~~~ghr~~V~~L~fr~g-t~~lys 261 (479)
T KOG0299|consen 211 -SSDGKYLATGGRDRHVQIWDCDTLEHV---------------------------KVFKGHRGAVSSLAFRKG-TSELYS 261 (479)
T ss_pred -cCCCcEEEecCCCceEEEecCcccchh---------------------------hcccccccceeeeeeecC-ccceee
Confidence 899999999999999999999875433 346699999999999876 779999
Q ss_pred EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 364 (502)
+|.|++|++|++.....+.++.+|.+.|.+|.-...+ +.+.+|+.|+++++|++.... ...+.++.+.+.|++|-.+
T Consensus 262 ~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~- 338 (479)
T KOG0299|consen 262 ASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND- 338 (479)
T ss_pred eecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-
Confidence 9999999999999999999999999999999988887 777777899999999994433 3345677889999999874
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-c-----------cCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-A-----------HDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~-----------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
..|++|+.+|.|.+|++.+. +++++.. + +...|++++..|.. .++++|+.+|.|++|
T Consensus 339 -~HfvsGSdnG~IaLWs~~KK---------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 339 -EHFVSGSDNGSIALWSLLKK---------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLW 407 (479)
T ss_pred -cceeeccCCceEEEeeeccc---------CceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEE
Confidence 36999999999999999887 3343332 2 22489999999976 999999999999999
Q ss_pred ECCCC--CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 433 DLSNN--QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 433 d~~~~--~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
-+..+ +..++..+. -.+.|++++|+++|.++++..|....+--|-..
T Consensus 408 ~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 408 KIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred EecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 99887 223344444 568899999999999878877777666666543
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3e-29 Score=243.13 Aligned_cols=286 Identities=18% Similarity=0.310 Sum_probs=241.3
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
..|..+|..++++.+..++++|..+ +++||..+.... +.. +...+.+|..+ -|.++++++|
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~----SikiWn~~t~kc----iRT----i~~~y~l~~~F-------vpgd~~Iv~G 430 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGE----SIKIWNRDTLKC----IRT----ITCGYILASKF-------VPGDRYIVLG 430 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCC----cEEEEEccCcce----eEE----eccccEEEEEe-------cCCCceEEEe
Confidence 5688999999999999999988766 578888775543 211 11224466655 4789999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+..|.+.|||+.+...+.. ...|.++|++++.+|+ +..+++||+|.+|++||
T Consensus 431 ~k~Gel~vfdlaS~~l~Et---------------------------i~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVET---------------------------IRAHDGAIWSISLSPD-NKGFVTGSADKTVKFWD 482 (888)
T ss_pred ccCCceEEEEeehhhhhhh---------------------------hhccccceeeeeecCC-CCceEEecCCcEEEEEe
Confidence 9999999999987554432 3379999999999999 55899999999999999
Q ss_pred CCC-----C--eee------EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 296 VAA-----G--KCN------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 296 ~~~-----~--~~~------~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
..- + +.+ +++. -...|.|+.++|++ .+|+++-.|.+|++|-+.+-+....+.+|.-+|.|+..+|
T Consensus 483 f~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 483 FKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred EEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence 741 1 111 1222 35789999999999 9999999999999999999888888899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~ 442 (502)
++. ++++|+.|.+|++|-+.-+ .+..++.+|...|.++.|.|.. .++.|+|.|+.|+-||-.... ++
T Consensus 561 DSk-livTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe--~i 627 (888)
T KOG0306|consen 561 DSK-LIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE--EI 627 (888)
T ss_pred CcC-eEEeccCCCceEEeccccc---------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh--hh
Confidence 865 8999999999999999876 7888999999999999999976 999999999999999988776 78
Q ss_pred EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
..+.+|...|+|++.+|+|.| +++++.|.+|++|.......
T Consensus 628 q~L~~H~~ev~cLav~~~G~~-vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGSF-VVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred eeeccchheeeeeEEcCCCCe-EEeccCCceeEeeeccCcce
Confidence 899999999999999999996 88999999999999765433
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3.4e-30 Score=238.34 Aligned_cols=253 Identities=18% Similarity=0.272 Sum_probs=208.0
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
.++.|+ ...+.+|++|++|+.|+||++.. .......+.+|..+|.+++
T Consensus 218 sai~~f------p~~~hLlLS~gmD~~vklW~vy~--------------------------~~~~lrtf~gH~k~Vrd~~ 265 (503)
T KOG0282|consen 218 SAIQWF------PKKGHLLLSGGMDGLVKLWNVYD--------------------------DRRCLRTFKGHRKPVRDAS 265 (503)
T ss_pred chhhhc------cceeeEEEecCCCceEEEEEEec--------------------------Ccceehhhhcchhhhhhhh
Confidence 566664 22799999999999999999864 1344456779999999999
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 353 (502)
|+++ +..++|+|.|+.|++||+++|+++..|. ....++|+.|+|++.+.|++|+.|+.|+.||+|+++.+...-.|-+
T Consensus 266 ~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 266 FNNC-GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred cccc-CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 9999 5588899999999999999999999986 3567899999999999999999999999999999998887788899
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.|..+.|-+.+. .|+++++++++++|+.+.+- ........+.....++..+|++ .++++=+.|+.|.+|.
T Consensus 344 ~i~~i~F~~~g~-rFissSDdks~riWe~~~~v--------~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 344 AILDITFVDEGR-RFISSSDDKSVRIWENRIPV--------PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFS 413 (503)
T ss_pred heeeeEEccCCc-eEeeeccCccEEEEEcCCCc--------cchhhcchhhccCcceecCCCC-CeehhhccCceEEEEe
Confidence 999999999876 79999999999999999762 2222222334456788889998 8999999999999998
Q ss_pred CCCCCe-eEEEEecCC--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748 434 LSNNQP-SCIASRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 434 ~~~~~~-~~~~~~~~~--~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
+...-. .....+.+| .|.-..+.|||||++ |++|..+|.+.+||.++.+.+...-.+
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccC
Confidence 754321 122334455 455678999999995 999999999999999998888766655
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=223.16 Aligned_cols=255 Identities=19% Similarity=0.303 Sum_probs=212.0
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|||+|+||++|+.||.|.|||+.++..... -+......+.-|..+|.|+.|+.+ ..+||+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-------------------LkYQAqd~fMMmd~aVlci~FSRD-sEMlAs 280 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-------------------LKYQAQDNFMMMDDAVLCISFSRD-SEMLAS 280 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhh-------------------hhhhhhcceeecccceEEEeeccc-HHHhhc
Confidence 499999999999999999999976532111 112223345568899999999999 679999
Q ss_pred EecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748 285 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 363 (502)
|+.||.|++|.+.+|.|++.|. .|+..|+|+.|+.++ ..+++++.|.++++.-+.++++...+.+|.+-|+.+.|.++
T Consensus 281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 9999999999999999999995 899999999999999 78999999999999999999999888999999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe--ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
|. .+++++.||+|++|+..+. .++.++. +...+|.++..-|.++..++.|...++|.|.++...-...
T Consensus 360 G~-~iisaSsDgtvkvW~~Ktt---------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs 429 (508)
T KOG0275|consen 360 GH-HIISASSDGTVKVWHGKTT---------ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS 429 (508)
T ss_pred CC-eEEEecCCccEEEecCcch---------hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence 76 7999999999999999987 4444443 4567899999999888999999999999999987543222
Q ss_pred EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
...-....+...+++.+|.|.| +.+.+.|+.++.|.+.+|..-+.+.-+
T Consensus 430 fsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred eccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeecc
Confidence 2222233566778899999996 778899999999999999876554433
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.9e-28 Score=227.95 Aligned_cols=246 Identities=32% Similarity=0.516 Sum_probs=207.8
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
.|+.| +|++++|++|+.+|.|++|++.... ....+..|...+.++.
T Consensus 13 ~~~~~-------~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------~~~~~~~~~~~i~~~~ 58 (289)
T cd00200 13 TCVAF-------SPDGKLLATGSGDGTIKVWDLETGE---------------------------LLRTLKGHTGPVRDVA 58 (289)
T ss_pred EEEEE-------cCCCCEEEEeecCcEEEEEEeeCCC---------------------------cEEEEecCCcceeEEE
Confidence 67777 7889999999999999999997532 1223446888899999
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 353 (502)
|+|+ +.+|++++.+|.|++|++.+++.+..+..|...+.++.|++++ .++++++.++.|.+|++++.+.......+..
T Consensus 59 ~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 136 (289)
T cd00200 59 ASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136 (289)
T ss_pred ECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCC
Confidence 9999 4689999999999999999988888898999999999999996 7888888899999999997666554556778
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+.+++|+|++ .++++++.+|.|++||++.. .....+..|...+.++.|+|++ ..+++++.++.|++||
T Consensus 137 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d 205 (289)
T cd00200 137 WVNSVAFSPDG-TFVASSSQDGTIKLWDLRTG---------KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWD 205 (289)
T ss_pred cEEEEEEcCcC-CEEEEEcCCCcEEEEEcccc---------ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEE
Confidence 89999999974 46777777999999999875 5677777899999999999987 7888888899999999
Q ss_pred CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
++.++ .+..+..|...+.++.|+|++. ++++++.+|.|++|++.++..+....
T Consensus 206 ~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 206 LSTGK--CLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred CCCCc--eecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 99876 4555557788999999999976 57777779999999999877766554
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=229.77 Aligned_cols=303 Identities=17% Similarity=0.229 Sum_probs=224.4
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
..|...|.++.+.|.|-.+++|+.+. .++.|.|..... .+. +...+.|.-...+.- +.||+.|..|++.
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy---~v~~wDf~gMda---s~~-~fr~l~P~E~h~i~s----l~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDY---TVKFWDFQGMDA---SMR-SFRQLQPCETHQINS----LQYSVTGDQILVV 232 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccc---eEEEEecccccc---cch-hhhccCcccccccce----eeecCCCCeEEEE
Confidence 34678899999999999999999886 668888876553 221 122222222222222 2237889988888
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+....++|+|-+....++.. +......-....+||...++|.+|+|.....+++++.||++++||
T Consensus 233 sg~aqakl~DRdG~~~~e~~---------------KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFS---------------KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred ecCcceeEEccCCceeeeee---------------ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 88899999997754332210 111122334456799999999999999889999999999999999
Q ss_pred CCCCee-eEee-----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc---ceEeecC--CeeEEEeCCCC
Q 010748 296 VAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAA--DVESLAWDPHA 364 (502)
Q Consensus 296 ~~~~~~-~~~~-----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~--~v~~v~~~~~~ 364 (502)
+...+. +..| .+..-++++++|++++ .+|++|+.||.|.+|+.+...... ....|.. .|+|+.|+++|
T Consensus 298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cCCchhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 986542 2223 2334578999999999 789999999999999986543322 2234554 89999999987
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEeC------CCcEEEEECCC
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGST------DKMVKLWDLSN 436 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~------dg~i~vwd~~~ 436 (502)
. +|++-+.|+++++||+|..+ +++....+- ..+-+.++|||+. .+|+||+. .|.+.+||..+
T Consensus 377 ~-~LlSRg~D~tLKvWDLrq~k--------kpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 377 N-YLLSRGFDDTLKVWDLRQFK--------KPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred c-hhhhccCCCceeeeeccccc--------cchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccc
Confidence 6 79999999999999999883 555555433 3456788999997 89999865 46799999988
Q ss_pred CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
.. .++.+.-....|..+.|+|.-.. |.+|+.||+++||=
T Consensus 447 ~d--~v~ki~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 447 LD--TVYKIDISTASVVRCLWHPKLNQ-IFAGSGDGTAHVYY 485 (641)
T ss_pred ee--eEEEecCCCceEEEEeecchhhh-eeeecCCCceEEEE
Confidence 77 56666666788999999999886 55678889998873
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-28 Score=211.19 Aligned_cols=235 Identities=22% Similarity=0.298 Sum_probs=196.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+.+|.+|.+++.|.++.||-...++. .-.+.+|+++|+|+....+ ...|++|
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGer---------------------------lGty~GHtGavW~~Did~~-s~~liTG 70 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGER---------------------------LGTYDGHTGAVWCCDIDWD-SKHLITG 70 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCce---------------------------eeeecCCCceEEEEEecCC-cceeeec
Confidence 68999999999999999997654332 2245699999999999988 6699999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-----CCCcEEEEecCCC-------CCccceEeecC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARIS-------THSGFKWAVAA 353 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-----~dg~i~iwd~~~~-------~~~~~~~~~~~ 353 (502)
++|.+++|||+.+|+++.+++ ...+|..+.|++.+ ++++.+. ..+.|.++|++.. .+......+.+
T Consensus 71 SAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s 148 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS 148 (327)
T ss_pred cccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence 999999999999999999997 57889999999999 6555554 3468999999843 33333445678
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.++.+.|.|-+. ++++|.++|.|.+||++++ ...+.+...|...|+.++++|+. .+++|++.|.+-++||
T Consensus 149 kit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 149 KITSALWGPLGE-TIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVD 218 (327)
T ss_pred ceeeeeecccCC-EEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCc-ceEEecccCccceeee
Confidence 899999999866 8999999999999999998 46777778899999999999998 9999999999999999
Q ss_pred CCCCCee-----------------------------------------------------EEEEecCCCCcEEEEEEcCC
Q 010748 434 LSNNQPS-----------------------------------------------------CIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 434 ~~~~~~~-----------------------------------------------------~~~~~~~~~~~v~~~~~spd 460 (502)
+.+.... .+-...+|-++|++++|+|+
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 8763210 12233568899999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCC
Q 010748 461 SPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 461 ~~~ll~sg~~dg~i~vwd~~~ 481 (502)
|. ..++||.||.|++.-+..
T Consensus 299 Gk-sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GK-SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred Cc-ccccCCCCceEEEEEecc
Confidence 99 599999999999986644
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.7e-28 Score=209.07 Aligned_cols=249 Identities=23% Similarity=0.447 Sum_probs=213.1
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
..++| +-+|..||+|+.|+++.||+++... ........+|.+.|-.++
T Consensus 24 ~Sv~w-------n~~g~~lasgs~dktv~v~n~e~~r-------------------------~~~~~~~~gh~~svdql~ 71 (313)
T KOG1407|consen 24 HSVAW-------NCDGTKLASGSFDKTVSVWNLERDR-------------------------FRKELVYRGHTDSVDQLC 71 (313)
T ss_pred eEEEE-------cccCceeeecccCCceEEEEecchh-------------------------hhhhhcccCCCcchhhhe
Confidence 45667 5789999999999999999997531 223335568999999999
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 353 (502)
|+|....+|++++.|.+|++||+++++++..+....+.+ -+.|+|+| .++++++.|..|.+.|.|+.+... ......
T Consensus 72 w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~-~~~~~~ 148 (313)
T KOG1407|consen 72 WDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVN-EEQFKF 148 (313)
T ss_pred eCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceee-hhcccc
Confidence 999989999999999999999999999999887544444 57899999 899999999999999999877554 445566
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+.-++|+.. ..+|+..+..|+|.|...... +++.++.+|.....||.|+|.| +++|+|+.|..+.+||
T Consensus 149 e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 149 EVNEISWNNS-NDLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWD 217 (313)
T ss_pred eeeeeeecCC-CCEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCC-ceEeeccccceeeccC
Confidence 7888899854 457777777899999988865 8999999999999999999998 9999999999999999
Q ss_pred CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748 434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
+... .|+..+..+.-+|+.+.|+.+|+ +||+|+.|..|-|=++.+|..+..+...
T Consensus 218 ~~EL--iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 218 VDEL--ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred hhHh--hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeecc
Confidence 9765 48888888999999999999999 5999999999999999998887665443
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=243.73 Aligned_cols=288 Identities=26% Similarity=0.381 Sum_probs=235.2
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
+...+.+.+|+ +..+++++.+. .|.+|...........+..|.. .+ .+++. ...+++|++|+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~---tl~~~~~~~~~~i~~~l~GH~g-~V----~~l~~-------~~~~~~lvsgS~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDS---TLHLWDLNNGYLILTRLVGHFG-GV----WGLAF-------PSGGDKLVSGST 269 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCc---eeEEeecccceEEEeeccCCCC-Cc----eeEEE-------ecCCCEEEEEec
Confidence 45678888888 77787887665 5555554443321112333332 22 34444 235899999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
|.+++|||+.++.+.. .+.+|...|.++...+. ++++||.|.+|++|++.
T Consensus 270 D~t~rvWd~~sg~C~~---------------------------~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTH---------------------------SLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVT 319 (537)
T ss_pred CCcEEeEecCCCcEEE---------------------------EecCCCceEEEEEccCc---eEeeccCCceEEEEecc
Confidence 9999999998765543 45689999999998765 88899999999999999
Q ss_pred CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v 377 (502)
+++++..+.+|.++|.++..+ + .++++|+.|++|++|++++.++.....+|...|.++.+.+. ..+++|+.|+.|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence 999999999999999999998 4 78999999999999999999999888899999999988764 589999999999
Q ss_pred EEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-CCCcEEEEE
Q 010748 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVA 456 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~ 456 (502)
++||+++. .+++..+.+|..-+.++.+.. ++|++++.|++|++||..+++ ++....+ |.+.|.+++
T Consensus 395 kvWdl~~~--------~~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 395 KVWDLRTK--------RKCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSALA 461 (537)
T ss_pred EeecCCch--------hhhhhhhcCCccccccccccc---ceeEeccccccEEEeecccCc--eeeeeccCCcccEEEee
Confidence 99999986 368899999999998887663 889999999999999999998 5666666 678899988
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748 457 FSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 457 ~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
+. .. .+++++.+|.+++||+.++..+++.+....
T Consensus 462 ~~--~~-~il~s~~~~~~~l~dl~~~~~~~~l~~~~~ 495 (537)
T KOG0274|consen 462 LG--KE-EILCSSDDGSVKLWDLRSGTLIRTLLSTDL 495 (537)
T ss_pred cC--cc-eEEEEecCCeeEEEecccCchhhhhhhccc
Confidence 87 23 588899999999999999999988765543
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.5e-28 Score=211.31 Aligned_cols=277 Identities=16% Similarity=0.291 Sum_probs=217.2
Q ss_pred CccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 138 DSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
.++.|.++.||| ...++++++.++ .+++|.++.... +.......+.+.++|++| +.+|+.+++|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~---tVR~wevq~~g~----~~~ka~~~~~~PvL~v~W-------sddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDG---TVRIWEVQNSGQ----LVPKAQQSHDGPVLDVCW-------SDDGSKVFSGG 91 (347)
T ss_pred cccchheeEeccccCceEEecccCC---ceEEEEEecCCc----ccchhhhccCCCeEEEEE-------ccCCceEEeec
Confidence 467899999999 577777888887 568888776532 222333345666799999 78999999999
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCCcEEEEe
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWD 295 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~vwd 295 (502)
.|+.+++|||.+++.. ....|.++|.++.|-+.. ...|++||.|++|+.||
T Consensus 92 ~Dk~~k~wDL~S~Q~~----------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVS----------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred cCCceEEEEccCCCee----------------------------eeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 9999999999875322 234799999999998762 23899999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc--ceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~~~~~~~ 373 (502)
++...++.++. -.+.|.++..-. .+++++..++.|.+|+++.+.... ......-.++|++..++.. .++.|+-
T Consensus 144 ~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsi 218 (347)
T KOG0647|consen 144 TRSSNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSI 218 (347)
T ss_pred cCCCCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeee
Confidence 99999999887 467888887654 578999999999999998764332 2224556789999988766 4699999
Q ss_pred CCcEEEEECCCCCCCCCCCCCccceEEeccCC---------CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
.|.+.+..+..+.. ..-+++..|.. .|++|+|+|.. ..|+|++.||++.+||-.... .+..
T Consensus 219 EGrv~iq~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~--kLk~ 288 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART--KLKT 288 (347)
T ss_pred cceEEEEecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh--hhhc
Confidence 99999999887532 34456666652 58899999987 899999999999999987665 5667
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~d 471 (502)
...|.++|++++|+.+|.+...+.|.|
T Consensus 289 s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 289 SETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cCcCCCccceeEecCCCCEEEEEeecc
Confidence 788999999999999999644455544
No 69
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.4e-27 Score=236.64 Aligned_cols=248 Identities=20% Similarity=0.236 Sum_probs=185.5
Q ss_pred ceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748 194 LCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 194 ~~~~~~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
.+++| +| ++++||+|+.|++|+||++....... ........+.+|...|.++
T Consensus 79 ~~v~f-------sP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------------~~~~~l~~L~gH~~~V~~l 131 (493)
T PTZ00421 79 IDVAF-------NPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------------NISDPIVHLQGHTKKVGIV 131 (493)
T ss_pred EEEEE-------cCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------ccCcceEEecCCCCcEEEE
Confidence 67777 66 78999999999999999997532110 0012334567899999999
Q ss_pred EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 352 (502)
+|+|.+.++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.......|.
T Consensus 132 ~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 132 SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 9999866799999999999999999999999999999999999999998 899999999999999999887665455555
Q ss_pred CC-eeEEEeCCCCCCEEEEE---eCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEe-CC
Q 010748 353 AD-VESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGS-TD 426 (502)
Q Consensus 353 ~~-v~~v~~~~~~~~~~~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s-~d 426 (502)
+. +..+.|.+.+..++.+| +.++.|++||+++. ..++.....+ ...+....|++++ ++|++++ .|
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~--------~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgD 281 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM--------ASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGE 281 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC--------CCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCC
Confidence 43 45778998766444444 34789999999976 2344444333 3456667789987 7777776 59
Q ss_pred CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
+.|++||+.++++.....+ .+..++..++|.|... +-+ ..--..++|.+...
T Consensus 282 g~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~--~dv-~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWS--LDT-RKCEIARFYALTYH 333 (493)
T ss_pred CeEEEEEeeCCceEEEeec-cCCCCCcceEeccccc--ccc-cceeeeEEEEecCC
Confidence 9999999998875433332 3456788899998643 211 11224567776544
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.5e-29 Score=212.46 Aligned_cols=289 Identities=19% Similarity=0.300 Sum_probs=226.4
Q ss_pred CCCCcccccccccc---CCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748 135 DDEDSEDLEDMTIN---PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 135 ~~~~~~~v~~~~~~---p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 211 (502)
...|.-.|-++.|+ |+|-+|++++.++. -..-+...+.-...+..|.. .-|..+ ...+...
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~-----pmlr~g~tgdwigtfeghkg--------avw~~~---l~~na~~ 73 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGK-----PMLRNGDTGDWIGTFEGHKG--------AVWSAT---LNKNATR 73 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCC-----chhccCCCCCcEEeeeccCc--------ceeeee---cCchhhh
Confidence 45688889999988 67889999998762 11111111101111222221 123211 1456677
Q ss_pred EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 291 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v 291 (502)
.|+++.|=+-+|||.-+++.+..+ .|...|.+++|+.+ .++|++|+.+..+
T Consensus 74 aasaaadftakvw~a~tgdelhsf----------------------------~hkhivk~~af~~d-s~~lltgg~ekll 124 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVTGDELHSF----------------------------EHKHIVKAVAFSQD-SNYLLTGGQEKLL 124 (334)
T ss_pred hhhhcccchhhhhhhhhhhhhhhh----------------------------hhhheeeeEEeccc-chhhhccchHHHh
Confidence 888999999999998876655432 58899999999999 7799999999999
Q ss_pred EEEeCCCCe-eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEE
Q 010748 292 KIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 292 ~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 370 (502)
+|||++..+ +...+.+|++.|..+-|+... +.+++++.|++||+||.+++.... ....+.+|+++.++++|. +++
T Consensus 125 rvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~-sL~~~s~VtSlEvs~dG~--ilT 200 (334)
T KOG0278|consen 125 RVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ-SLEFNSPVTSLEVSQDGR--ILT 200 (334)
T ss_pred hhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE-EEecCCCCcceeeccCCC--EEE
Confidence 999998764 567789999999999999888 888899999999999999988766 667889999999999875 666
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010748 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 450 (502)
Q Consensus 371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 450 (502)
-...+.|.+||..+. .++.... -...|.+.+++|+. ..+++|+.|..++.||+.++..+..+ ..+|.+
T Consensus 201 ia~gssV~Fwdaksf---------~~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~g 268 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSF---------GLLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFG 268 (334)
T ss_pred EecCceeEEeccccc---------cceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCC
Confidence 667788999999886 4454444 34568999999987 89999999999999999999843322 478999
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
+|.|+.|+|+|. +.|+|+.||+|++|.+..++..
T Consensus 269 pVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 269 PVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence 999999999999 7999999999999999776654
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.1e-28 Score=219.00 Aligned_cols=241 Identities=25% Similarity=0.367 Sum_probs=199.9
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC--CcEEEEEe
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILASAS 286 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~sgs 286 (502)
+.++++|++||.++||+.. .+......+|+++|.+++|.-.. ...|+++|
T Consensus 115 ~~~IltgsYDg~~riWd~~----------------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK----------------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred CceEEEeecCCeeEEEecC----------------------------CceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 7899999999999999986 33444566999999999885432 23699999
Q ss_pred cCCcEEEEeCCCCee----eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC---------------------
Q 010748 287 ADKQVKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--------------------- 341 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~--------------------- 341 (502)
.|.++++|-++.+.. +..-++|...|.++...+++ ..+++|+.|.+|.+|+..+
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 999999999887643 33345999999999999999 8999999999999999321
Q ss_pred ----CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748 342 ----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 342 ----~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
..+.....+|..+|.++.|++ ...+++++.|.+|+.||+.++ ....++. ....++++.++|..
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg---------~~~~~~~-~~ksl~~i~~~~~~- 312 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG---------GLKSTLT-TNKSLNCISYSPLS- 312 (423)
T ss_pred cccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecc---------cceeeee-cCcceeEeeccccc-
Confidence 112223457888999999998 347999999999999999987 3444443 46779999999976
Q ss_pred CEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-cccccccC
Q 010748 418 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA-GISNRFSK 491 (502)
Q Consensus 418 ~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~-~~~~~~~~ 491 (502)
.+|++|+.|..|++||.+++.. ....++.+|.+.|.++.|+|...|+|++|+.|+++++||+++.+ .+..+.+|
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 9999999999999999998753 35677889999999999999999999999999999999999988 66666665
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.9e-28 Score=203.56 Aligned_cols=280 Identities=18% Similarity=0.218 Sum_probs=218.8
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
+-+.+.|.++.|+-+|++.++++.+. ++++|+- ..+....-|..|...+ +. .+.+.+...+++|
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdr---tvrLWNp--~rg~liktYsghG~EV----lD-------~~~s~Dnskf~s~ 77 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDR---TVRLWNP--LRGALIKTYSGHGHEV----LD-------AALSSDNSKFASC 77 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCc---eEEeecc--cccceeeeecCCCcee----ee-------ccccccccccccC
Confidence 34778999999999999999999887 4555544 3332223344443222 11 1125678889999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+.|..|.+||++++... ..+.+|...|+.++|+.. ...+++||.|.++++||
T Consensus 78 GgDk~v~vwDV~TGkv~---------------------------Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVD---------------------------RRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWD 129 (307)
T ss_pred CCCceEEEEEcccCeee---------------------------eecccccceeeEEEecCc-ceEEEeccccceeEEEE
Confidence 99999999999985433 356799999999999998 67999999999999999
Q ss_pred CCCC--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748 296 VAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 296 ~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 373 (502)
.++. ++++.+....+.|.++..+. +.+++|+.||+++.||+|.++...- -...+|+|++|++++. ..++++.
T Consensus 130 CRS~s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~n-c~La~~l 203 (307)
T KOG0316|consen 130 CRSRSFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGN-CSLASSL 203 (307)
T ss_pred cccCCCCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCC-EEEEeec
Confidence 9765 68888888889999999976 5699999999999999998876542 3467899999999876 8889999
Q ss_pred CCcEEEEECCCCCCCCCCCCCccceEEeccCCCe--eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV--CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451 (502)
Q Consensus 374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 451 (502)
+++|++.|-.++ +.+....+|...- ...+++... ..+++|+.||.|++||+.... .+..+..+...
T Consensus 204 ~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v 271 (307)
T KOG0316|consen 204 DSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDET--QISKLSVVSTV 271 (307)
T ss_pred cceeeecccchh---------HHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccce--eeeeeccCCce
Confidence 999999999987 7888888887643 334555544 789999999999999999887 45566666666
Q ss_pred -EEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 452 -VFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 452 -v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
|..+.++|.-.- |+++.. +.+.+|--
T Consensus 272 ~v~dl~~hp~~~~-f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 272 IVTDLSCHPTMDD-FITATG-HGDLFWYQ 298 (307)
T ss_pred eEEeeecccCccc-eeEecC-Cceeceee
Confidence 789999998764 444443 34666643
No 73
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=237.91 Aligned_cols=296 Identities=20% Similarity=0.242 Sum_probs=234.3
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeec-cccCCC---cceeeeecCCCCCCCCCCEEEE
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAF---PLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~---~~~~~~~~~~~~~s~~~~~la~ 214 (502)
+..+.++...++-+.|++++.. .++||.++.... .....|. ...+.. ...+.|. .-..++|||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs----~lklyai~~~~~---~~~~~~~~k~kqn~~~S~~DVkW~------~~~~NlIAT 105 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS----LLKLYAINPNDF---SEKCNHRFKTKQNKFYSAADVKWG------QLYSNLIAT 105 (839)
T ss_pred ccccceEeecCCcceeEEeccc----ceeeEeeCcccC---Ccceeeecccccceeeehhhcccc------cchhhhhee
Confidence 3457788888998888887654 689998876654 2222221 111111 1224443 236899999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
++..|.|.+||+... ...+....+..|...|+++.|++...++|+|||.||+|++|
T Consensus 106 ~s~nG~i~vWdlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~ 161 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCW 161 (839)
T ss_pred ecCCCcEEEEecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEE
Confidence 999999999999731 12344456778999999999999999999999999999999
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc-cceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 373 (502)
|++..+...++.+.+..|..+.|+|..+..|+++...|.+++||+|.+... ..+..|.++|.|+.|+|+ ..++++|+.
T Consensus 162 DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGR 240 (839)
T KOG0269|consen 162 DLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGR 240 (839)
T ss_pred eeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCC
Confidence 999999999999999999999999998899999999999999999987654 445689999999999995 569999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCc
Q 010748 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGA 451 (502)
Q Consensus 374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~ 451 (502)
|+.|+||++.... ..+..++. ...+|.++.|-|..+.+|++++. |-.|+|||++..- ++..++..|...
T Consensus 241 DK~vkiWd~t~~~-------~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~ 311 (839)
T KOG0269|consen 241 DKMVKIWDMTDSR-------AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDS 311 (839)
T ss_pred CccEEEEeccCCC-------ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccceeeeccCcc
Confidence 9999999998753 13344433 35789999999998889999876 7789999998754 467788889999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 452 v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
++.++|....+.+|.+++.||+|..-.+++
T Consensus 312 vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 312 VTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 999999775555788999999876655443
No 74
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=239.70 Aligned_cols=258 Identities=20% Similarity=0.332 Sum_probs=212.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.++-+.|++++. ..+.||.+.......+...-.+ . + ..-.-.+..+.|+....++||++
T Consensus 48 nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k-------------~-k------qn~~~S~~DVkW~~~~~NlIAT~ 106 (839)
T KOG0269|consen 48 NRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFK-------------T-K------QNKFYSAADVKWGQLYSNLIATC 106 (839)
T ss_pred cCCcceeEEecc-cceeeEeeCcccCCcceeeecc-------------c-c------cceeeehhhcccccchhhhheee
Confidence 466666777764 5778888765444333322100 0 0 01123467788987778899999
Q ss_pred ecCCcEEEEeCCC---CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 286 SADKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 286 s~dg~v~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
+..|.|.+||+.. .+.+..|..|...+.++.|++..+++|++|+.||+|++||+|..+...........|+.|.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 9999999999987 5677788999999999999999999999999999999999999888877778888899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~ 442 (502)
..++.|+++.+.|.|++||+|.. .++...+.+|.++|.|+.|+|++ .+|||||.|++|+||++.+.+...+
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp--------~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQP--------DRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred CCCceEEEecCCceEEEeeccCc--------hhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccce
Confidence 98899999999999999999988 58889999999999999999976 9999999999999999998776566
Q ss_pred EEecCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCccccccccCCCC
Q 010748 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
.++. ...+|.++.|-|..+|.||+++. |-.|+|||++..-.....|..+..
T Consensus 258 ~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 258 HTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred eEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 6654 35789999999999999998765 568999999887766666655443
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=7.5e-28 Score=215.55 Aligned_cols=254 Identities=19% Similarity=0.268 Sum_probs=202.7
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|+.+++|||+.|..-.||++.+++.. ..+.+|++.|+++.|+.+ +.+||||
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------------~eltgHKDSVt~~~Fshd-gtlLATG 124 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTGEFA---------------------------GELTGHKDSVTCCSFSHD-GTLLATG 124 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCCcce---------------------------eEecCCCCceEEEEEccC-ceEEEec
Confidence 689999999999999999999876522 234589999999999999 6699999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 365 (502)
..+|.|+||...++.....+...-..+.=|.|||.+ .+|++|+.||.+-+|.+.++.....+.+|..++++-.|.|+|+
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence 999999999999999888887667778889999988 9999999999999999999766666788999999999999976
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCC----------------------------------CCccceEEe--------cc
Q 010748 366 HSFVVSLEDGTIKGFDIRTAKSDPDST----------------------------------SQQSSFTLH--------AH 403 (502)
Q Consensus 366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~----------------------------------~~~~~~~~~--------~h 403 (502)
.++++..||+|++|++.++.+..... ..+.+.... .+
T Consensus 204 -r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 204 -RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred -eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 79999999999999999874310000 000001111 12
Q ss_pred CCCeeEEEEcCCC--CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 404 DKAVCTISYNPLV--PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 404 ~~~v~~l~~sp~~--~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
...+.|+.+.|.. -.++|+|+.||+|.|||+...++ +..-.|..+|..+.|.+ ..| |++++.+|.|+.||.++
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~---R~~c~he~~V~~l~w~~-t~~-l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL---RHICEHEDGVTKLKWLN-TDY-LLTACANGKVRQWDART 357 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchh---heeccCCCceEEEEEcC-cch-heeeccCceEEeeeccc
Confidence 2223333333321 14788999999999999998873 33445778899999999 565 77889999999999999
Q ss_pred CccccccccCCCC
Q 010748 482 DAGISNRFSKYSK 494 (502)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (502)
|.++..+.+|...
T Consensus 358 G~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 358 GQLKFTYTGHQMG 370 (399)
T ss_pred cceEEEEecCchh
Confidence 9999998888654
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.4e-27 Score=241.51 Aligned_cols=314 Identities=18% Similarity=0.294 Sum_probs=228.5
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCC----CC---CCeeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GD---PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 210 (502)
++..|.++.++|++..+++|+.-.|. .+.||..+.-.. .. +.+...+.. ..+...|+.| ++||+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~-~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~-------S~dG~ 82 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDG-GIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRF-------SPDGS 82 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccc-cceeeccccccchhhhhhcccchhheeecc-ccCceeEEEE-------CCCCC
Confidence 34568999999999999999833332 234776543221 00 111111111 1233367777 89999
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
+||+|+.|+.|.||..... . ....+|.... .+.....+....+.+|...|..++|+|+ ..+|+++|.|++
T Consensus 83 ~lAsGSDD~~v~iW~~~~~-~--~~~~fgs~g~------~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~Dns 152 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEI-G--SGTVFGSTGG------AKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNS 152 (942)
T ss_pred eEeeccCcceEEEeeeccc-C--Cccccccccc------ccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccce
Confidence 9999999999999998741 1 1111211111 0112234556677899999999999998 669999999999
Q ss_pred EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE------eecCCeeEEEeCCCC
Q 010748 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHA 364 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~~v~~v~~~~~~ 364 (502)
|.||+..+.+++..+.+|.+.|..+.|.|-| ++|++-+.|++|++|.+.......... .....+..+.|+|+|
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG 231 (942)
T ss_pred EEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence 9999999999999999999999999999999 999999999999999976543322111 123457899999998
Q ss_pred CCEEEEE-eCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC--------C----CC----EEEEEe
Q 010748 365 EHSFVVS-LEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------V----PN----LLATGS 424 (502)
Q Consensus 365 ~~~~~~~-~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--------~----~~----~l~t~s 424 (502)
. +|++. +.++ ++.|.+-.+. +.-..+.+|.+++.+++|+|. | +. .+|+|+
T Consensus 232 ~-~las~nA~n~~~~~~~IieR~tW---------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 232 H-HLASPNAVNGGKSTIAIIERGTW---------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred C-eecchhhccCCcceeEEEecCCc---------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 7 45554 3333 5667665443 667788999999999999982 1 11 788999
Q ss_pred CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
.|++|.||.....+|..+ ...-....|..++|+|||. .|.+++.||+|.+..+...+
T Consensus 302 qDrSlSVW~T~~~RPl~v-i~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFV-IHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCccEEEEecCCCCchhh-hhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcchHH
Confidence 999999999988776433 3333457899999999998 47778999999999986543
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=219.44 Aligned_cols=293 Identities=19% Similarity=0.404 Sum_probs=232.8
Q ss_pred CcccCCCCCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748 129 PYLKDKDDEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 207 (502)
|++..- ..|.+.|.+++=+|.. ..+++|+.+| .++||.+..... ...+.-|...+.++ |+
T Consensus 57 PFv~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG---~VkiWnlsqR~~--~~~f~AH~G~V~Gi--~v----------- 117 (433)
T KOG0268|consen 57 PFVGSL-DGHRDGVSCLAKHPNKLSTVASGSCDG---EVKIWNLSQREC--IRTFKAHEGLVRGI--CV----------- 117 (433)
T ss_pred cchhhc-cccccccchhhcCcchhhhhhccccCc---eEEEEehhhhhh--hheeecccCceeeE--Ee-----------
Confidence 555432 5699999999999998 7889999998 457777765442 23334454444332 22
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+...+++++.|.+|+.|.++.. +. ..+ .....++.|.-+.. .+.+|||+.
T Consensus 118 ~~~~~~tvgdDKtvK~wk~~~~----p~------------------------~ti-lg~s~~~gIdh~~~-~~~FaTcGe 167 (433)
T KOG0268|consen 118 TQTSFFTVGDDKTVKQWKIDGP----PL------------------------HTI-LGKSVYLGIDHHRK-NSVFATCGE 167 (433)
T ss_pred cccceEEecCCcceeeeeccCC----cc------------------------eee-eccccccccccccc-cccccccCc
Confidence 2267888889999999998741 11 111 12356777777766 568999987
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 367 (502)
+ |-|||.....++.++.--...|.++.|+|....+|++++.|+.|.+||+|+..+.. .......-+.++|+| ....
T Consensus 168 ~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mRTN~IswnP-eafn 243 (433)
T KOG0268|consen 168 Q--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMRTNTICWNP-EAFN 243 (433)
T ss_pred e--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeeccccceecCc-cccc
Confidence 4 99999999999999988889999999999998999999999999999999988765 455666778999999 5567
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 447 (502)
Q Consensus 368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~ 447 (502)
|+++++|..++.||+|.. ..++....+|.+.|.++.|||.| .-+++||.|.+|+||.++.+...-++ ...
T Consensus 244 F~~a~ED~nlY~~DmR~l--------~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiY-htk 313 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNL--------SRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIY-HTK 313 (433)
T ss_pred eeeccccccceehhhhhh--------cccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhh-hHh
Confidence 999999999999999998 58889999999999999999998 89999999999999999887632222 223
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
..+.|+|+.|+.|.+| +++|+.|+.|++|.....+.+
T Consensus 314 RMq~V~~Vk~S~Dsky-i~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKY-IISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhheeeEEEEeccccE-EEecCCCcceeeeecchhhhc
Confidence 4567999999999997 889999999999998765554
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.9e-28 Score=220.48 Aligned_cols=282 Identities=18% Similarity=0.299 Sum_probs=219.1
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
+-|..++.++.|.++...|++|+.+. .+++|....... ....|++.. +..+.+. |.++++++++
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr---~Ik~W~v~~~k~~~~~tLaGs~-----g~it~~d-------~d~~~~~~iA 236 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDR---IIKLWNVLGEKSELISTLAGSL-----GNITSID-------FDSDNKHVIA 236 (459)
T ss_pred hccccccceeEEccCcchhhhcchhh---hhhhhhcccchhhhhhhhhccC-----CCcceee-------ecCCCceEEe
Confidence 45889999999999999999999887 456665543321 001111110 0012222 3678999999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
++.|+.+++|+++. .+....+.+|++.|+++.|... ...+++|+.|.+|++|
T Consensus 237 as~d~~~r~Wnvd~---------------------------~r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDS---------------------------LRLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLW 288 (459)
T ss_pred ecCCCceeeeeccc---------------------------hhhhhhhcccccceeeehhhcc-ccceeeccccchhhhh
Confidence 99999999999985 3445567799999999999887 4459999999999999
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d 374 (502)
|+....|.+++. ..+.+..|..++ ..+++|-.|+.|++||.|+..... .....+.|+++..++++. .+++++.|
T Consensus 289 Dl~k~~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~-sv~~gg~vtSl~ls~~g~-~lLsssRD 362 (459)
T KOG0288|consen 289 DLQKAYCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR-SVPLGGRVTSLDLSMDGL-ELLSSSRD 362 (459)
T ss_pred hhhhhheecccc-ccccccceEecc---eeeeecccccceEEEeccCCceee-EeecCcceeeEeeccCCe-EEeeecCC
Confidence 999999988875 345566666663 678999999999999999988765 455667999999999765 67788999
Q ss_pred CcEEEEECCCCCCCCCCCCCccceEEecc----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010748 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 450 (502)
Q Consensus 375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 450 (502)
.++.++|+++. .....+.+. ....+.+.|||++ .|+++||.||.|+||++.+++...+........
T Consensus 363 dtl~viDlRt~---------eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~ 432 (459)
T KOG0288|consen 363 DTLKVIDLRTK---------EIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA 432 (459)
T ss_pred Cceeeeecccc---------cEEEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence 99999999987 333333321 2348899999998 999999999999999999998655555444444
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748 451 AVFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 451 ~v~~~~~spd~~~ll~sg~~dg~i~vw 477 (502)
.|++++|+|.|.+ |++++.++.+.+|
T Consensus 433 aI~s~~W~~sG~~-Llsadk~~~v~lW 458 (459)
T KOG0288|consen 433 AITSLSWNPSGSG-LLSADKQKAVTLW 458 (459)
T ss_pred ceEEEEEcCCCch-hhcccCCcceEec
Confidence 6999999999998 6678889999999
No 79
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9e-27 Score=204.58 Aligned_cols=272 Identities=22% Similarity=0.364 Sum_probs=212.1
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
..+.|.++.|+|..+.|++++.++ +|++|....... .+...|..++ ++.++. +...+++|+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDg---slrlYdv~~~~l---~~~~~~~~pl----L~c~F~--------d~~~~~~G~~ 73 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDG---SLRLYDVPANSL---KLKFKHGAPL----LDCAFA--------DESTIVTGGL 73 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccC---cEEEEeccchhh---hhheecCCce----eeeecc--------CCceEEEecc
Confidence 457899999999999999999998 667777766543 3334444444 666663 4778999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
||.|+.+|++++... .+..|..+|.||.+++. ...+++||+|++|++||.+
T Consensus 74 dg~vr~~Dln~~~~~----------------------------~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNED----------------------------QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred CceEEEEEecCCcce----------------------------eeccCCCceEEEEeecc-CCeEEEcccCccEEEEecc
Confidence 999999999864332 33469999999999987 6699999999999999999
Q ss_pred CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce--EeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~dg 375 (502)
...+..++.. ..+|.|+.... +.|++|+.+..+.+||+|+....... ....-.++|+++.|.+. -+++++-+|
T Consensus 125 ~~~~~~~~d~-~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieG 199 (323)
T KOG1036|consen 125 NKVVVGTFDQ-GKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEG 199 (323)
T ss_pred cccccccccc-CceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecc
Confidence 8666666653 45899988764 67999999999999999987654322 24566799999999655 478888999
Q ss_pred cEEEEECCCCCCCCCCCCCccceEEeccC---------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.|.+=.+..... .....+.+..|. -+|++|+|+|-. +.|+||+.||.|.+||+.+.+ .+..+.
T Consensus 200 RVavE~~d~s~~-----~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK--rl~q~~ 271 (323)
T KOG1036|consen 200 RVAVEYFDDSEE-----AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK--RLKQLA 271 (323)
T ss_pred eEEEEccCCchH-----HhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh--hhhhcc
Confidence 988765544311 024456666665 379999999986 899999999999999999887 455666
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeC
Q 010748 447 PKAGAVFSVAFSEDSPFVLAIGGS 470 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~ll~sg~~ 470 (502)
.....|.+++|+.+|. +||+|++
T Consensus 272 ~~~~SI~slsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSMDGS-LLAIASS 294 (323)
T ss_pred CCCCceEEEEeccCCC-eEEEEec
Confidence 6677899999999999 6888765
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.2e-27 Score=235.14 Aligned_cols=235 Identities=27% Similarity=0.435 Sum_probs=207.6
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
..++++|+.+++|++|+...+.. ....+.+|.+.|+++++.. +..+|++|+.|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~--------------------------i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D 270 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYL--------------------------ILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD 270 (537)
T ss_pred cCeEEecCCCceeEEeecccceE--------------------------EEeeccCCCCCceeEEEec-CCCEEEEEecC
Confidence 77999999999999999875332 2223679999999999987 46799999999
Q ss_pred CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 368 (502)
.++++||+.+|.|.+++.+|.+.|.++...+ .++++|+.|.+|++|++.++.......+|..+|.++..+ ..++
T Consensus 271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~l 344 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLL 344 (537)
T ss_pred CcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEE
Confidence 9999999999999999999999999998876 568899999999999999998888666799999999998 3489
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC
Q 010748 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK 448 (502)
Q Consensus 369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~ 448 (502)
++|+.||+|++|++.+. +++..+.+|...|.++.+.+. ..+++|+.|++|++||+.+.. .++..+.+|
T Consensus 345 vsgs~d~~v~VW~~~~~---------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h 412 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTG---------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-KCIHTLQGH 412 (537)
T ss_pred EEEecCceEEEEEhhhc---------eeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-hhhhhhcCC
Confidence 99999999999999976 899999999999999988863 789999999999999999982 388899999
Q ss_pred CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748 449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
..-+..+.+.. . .|++++.|+.|++||..++++++...++
T Consensus 413 ~~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 413 TSLVSSLLLRD--N-FLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred ccccccccccc--c-eeEeccccccEEEeecccCceeeeeccC
Confidence 98887666644 4 5999999999999999999999888775
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.1e-27 Score=218.69 Aligned_cols=253 Identities=19% Similarity=0.254 Sum_probs=193.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.|.|-.|++|+.|-.|++||+..++...+. .+...-.....|.+++|++.+. .|++.
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------------fr~l~P~E~h~i~sl~ys~Tg~-~iLvv 232 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------------FRQLQPCETHQINSLQYSVTGD-QILVV 232 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchh----------------------hhccCcccccccceeeecCCCC-eEEEE
Confidence 789999999999999999999876643321 1111223456899999999954 66666
Q ss_pred ecCCcEEEEeCCCCeeeE------------eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee--
Q 010748 286 SADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-- 351 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-- 351 (502)
+.....+|+|-.....+. .-++|...++|.+|+|.....|+|++.||++++|++...+.....+.+
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 667789999954322222 225799999999999999899999999999999999876654433332
Q ss_pred ----cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC--CeeEEEEcCCCCCEEEEEeC
Q 010748 352 ----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 352 ----~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~ 425 (502)
.-.+++++|++++. .|++|+.||.|.+|+.+.... ......-.+|.. .|+||.||++| ++|++-+.
T Consensus 313 ~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v------~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~ 384 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV------RPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGF 384 (641)
T ss_pred CCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCccc------ccceEeeeccCCCCceeEEEecccc-chhhhccC
Confidence 33589999999987 699999999999999876532 123344467876 89999999998 99999999
Q ss_pred CCcEEEEECCCCCeeEEEEec--CCCCcEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCccccccccC
Q 010748 426 DKMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 426 dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~ll~sg~~------dg~i~vwd~~~~~~~~~~~~~ 491 (502)
|++++|||++..+. ++.... ...-+-+.++|||+.+ ||++|.+ .|.+.+||..+-..++++.-.
T Consensus 385 D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred CCceeeeecccccc-chhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 99999999998653 333332 2334567899999998 6888764 367999999988888776543
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-25 Score=196.62 Aligned_cols=245 Identities=18% Similarity=0.282 Sum_probs=194.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+++|.+|++++.|.+|+|||...+..+.. ...+.-.|..++|... .+.++.+
T Consensus 23 s~~G~~litss~dDsl~LYd~~~g~~~~t---------------------------i~skkyG~~~~~Fth~-~~~~i~s 74 (311)
T KOG1446|consen 23 SDDGLLLITSSEDDSLRLYDSLSGKQVKT---------------------------INSKKYGVDLACFTHH-SNTVIHS 74 (311)
T ss_pred cCCCCEEEEecCCCeEEEEEcCCCceeeE---------------------------eecccccccEEEEecC-CceEEEc
Confidence 89999999999999999999976544332 2234456777777665 4466666
Q ss_pred ec--CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748 286 SA--DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 286 s~--dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 363 (502)
+. |.+|+..++.+.+.++.|.||...|.+|+.+|.+ ..+++++.|++|++||+|..++...+.. ..-..++|+|.
T Consensus 75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~ 151 (311)
T KOG1446|consen 75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPE 151 (311)
T ss_pred cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCC
Confidence 66 8899999999999999999999999999999999 8999999999999999998887764332 33445789997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
|- +|+++.....|++||+|+... .|..++. ......+.+.|+|+| ++|+.++..+.+++.|.-++...
T Consensus 152 GL-ifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~ 222 (311)
T KOG1446|consen 152 GL-IFALANGSELIKLYDLRSFDK-------GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVK 222 (311)
T ss_pred Cc-EEEEecCCCeEEEEEecccCC-------CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEe
Confidence 64 778887777999999998742 3444443 336778999999999 88888888999999999998854
Q ss_pred EEEEecCCCCc-EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748 441 CIASRNPKAGA-VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 441 ~~~~~~~~~~~-v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
..+......+. -...+|+||++| +.+|+.||+|.+|++.++..+...-+.
T Consensus 223 ~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 223 STFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred eeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 44444333332 257889999996 778999999999999999998776664
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.1e-26 Score=198.92 Aligned_cols=230 Identities=20% Similarity=0.289 Sum_probs=185.6
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEe
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs 286 (502)
++.|+|+|+.|-+|+|||+..... ...+..|.+.|++|.|.+.. .+.|++|+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~q---------------------------lg~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQ---------------------------LGILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhh---------------------------hcceeccccceEEEEecCCcchhheeeec
Confidence 699999999999999999974222 22344699999999999872 13799999
Q ss_pred cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 366 (502)
.||.|.+|+.....++.++++|.+.|+.++.||.+ .+.++.+.|+.+++|++-.++... ........+.+.|+|.|.
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~-v~~L~~~at~v~w~~~Gd- 181 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAF-VLNLKNKATLVSWSPQGD- 181 (362)
T ss_pred CCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccce-eeccCCcceeeEEcCCCC-
Confidence 99999999999999999999999999999999999 999999999999999998776543 444555566699999887
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.|+++..+ .|-+|.+.+. . ++........+.++.|.. ...|++|+.++.|++||..+.. +...+.
T Consensus 182 ~F~v~~~~-~i~i~q~d~A---------~-v~~~i~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~--~~~~~~ 246 (362)
T KOG0294|consen 182 HFVVSGRN-KIDIYQLDNA---------S-VFREIENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDT--PLTEFL 246 (362)
T ss_pred EEEEEecc-EEEEEecccH---------h-HhhhhhccccceeeeecC--CceEEEecCCceEEEeccCCCc--cceeee
Confidence 45555544 5888988764 2 222222335567777765 3789999999999999998865 677888
Q ss_pred CCCCcEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 447 PKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 447 ~~~~~v~~~~~--spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
+|..+|-.+.+ .|++. +|+++++||.|+|||+....
T Consensus 247 AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred cchhheeeeEEEecCCce-EEEEeccCceEEEEEccccc
Confidence 99999999984 45665 69999999999999998773
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-27 Score=226.59 Aligned_cols=246 Identities=22% Similarity=0.330 Sum_probs=207.4
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
|.++||.+||.||.|++|++....... .......+..|.+.|+.+....+ ++.|+|+|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------------s~~~~asme~HsDWVNDiiL~~~-~~tlIS~S 92 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP---------------------STPYIASMEHHSDWVNDIILCGN-GKTLISAS 92 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc---------------------ccchhhhhhhhHhHHhhHHhhcC-CCceEEec
Confidence 678899999999999999986422111 01124456789999999999988 55899999
Q ss_pred cCCcEEEEeCCCC--eeeEeeccCCCCeEEEEE-cCCCCcEEEEEeCCCcEEEEecCCCCC--cc--------ceE-eec
Q 010748 287 ADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAW-NHHSPQILLSGSFDRSVVMKDARISTH--SG--------FKW-AVA 352 (502)
Q Consensus 287 ~dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~--------~~~-~~~ 352 (502)
.|-+|++|+...+ -|+.++..|.+.|.|+++ .++. .++++|+.|+.|.+||+.++.. .. ... ++.
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9999999999877 688899999999999999 5555 8999999999999999997632 11 111 456
Q ss_pred CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
..|.+++.++.+ ..+++|+..+.|++||.++. ..+..+.+|+..|.++..+++| ..++++|.||+|++|
T Consensus 172 ~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 172 DSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLW 240 (735)
T ss_pred cceeeeecCCcc-eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEee
Confidence 779999999976 48999999999999999997 7788889999999999999998 899999999999999
Q ss_pred ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
|+...+ |+.++..|...|+++..+|+-.+ +.+|+.||.|..=|+++......++
T Consensus 241 dLgqQr--Cl~T~~vH~e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~~~tlic 294 (735)
T KOG0308|consen 241 DLGQQR--CLATYIVHKEGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPAKSTLIC 294 (735)
T ss_pred eccccc--eeeeEEeccCceEEEeeCCCcce-EEecCCCCcEEecccCCchhheEee
Confidence 998777 89999999999999999999885 8999999999999998854433333
No 85
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9e-27 Score=197.93 Aligned_cols=241 Identities=24% Similarity=0.383 Sum_probs=193.1
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe-ccCCCcEEEEEe
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~sgs 286 (502)
-|++|||++.|++|+|+.+...... .....+.+|.++|+.++| +|..+.+|||++
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s------------------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQS------------------------KLLAELTGHSGPVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCc------------------------eeeeEecCCCCCeeEEeecccccCcEeeEee
Confidence 4999999999999999998653322 334456799999999999 567788999999
Q ss_pred cCCcEEEEeCCCCe--eeEeeccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCC---CccceEeecCCeeEEEe
Q 010748 287 ADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLAW 360 (502)
Q Consensus 287 ~dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~~ 360 (502)
.||.|.||.-.+++ ....+..|...|++++|.|.+ +-+|++++.||.|.+.+.+... .......|.-.|++++|
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 99999999988774 344557899999999999875 2578899999999999988762 23345678889999999
Q ss_pred CCC---C----------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC---CCEEEEEe
Q 010748 361 DPH---A----------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---PNLLATGS 424 (502)
Q Consensus 361 ~~~---~----------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---~~~l~t~s 424 (502)
.|. | .+.|++|+.|..|+||+..... ...-.++.+|...|..++|.|.. ..+||+|+
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 985 2 1359999999999999998762 24455689999999999999964 35899999
Q ss_pred CCCcEEEEECCCC-CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 425 TDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 425 ~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
.||+|.||-.... .+.....+......++++.||+.|. +|+.++.|+.|.+|.-.
T Consensus 231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeC
Confidence 9999999987632 1112222333457799999999998 69999999999999754
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-25 Score=196.08 Aligned_cols=282 Identities=17% Similarity=0.247 Sum_probs=208.5
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
....|+++.|+++|.+|++++.++ .|++|....... ......+...+ -+..+ ....+.++.++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dD---sl~LYd~~~g~~--~~ti~skkyG~----~~~~F-------th~~~~~i~sSt 76 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDD---SLRLYDSLSGKQ--VKTINSKKYGV----DLACF-------THHSNTVIHSST 76 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCC---eEEEEEcCCCce--eeEeecccccc----cEEEE-------ecCCceEEEccC
Confidence 356899999999999999988776 455555544332 11111111111 12222 233445555554
Q ss_pred --CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 218 --EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 218 --dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
|.+||..++.+ .+....+.||...|++|+.+|- ...++|++.|++|++||
T Consensus 77 k~d~tIryLsl~d---------------------------NkylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWD 128 (311)
T KOG1446|consen 77 KEDDTIRYLSLHD---------------------------NKYLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWD 128 (311)
T ss_pred CCCCceEEEEeec---------------------------CceEEEcCCCCceEEEEEecCC-CCeEEecccCCeEEeeE
Confidence 78999999875 4445578899999999999998 47999999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-ccceE----eecCCeeEEEeCCCCCCEEEE
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKW----AVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~----~~~~~v~~v~~~~~~~~~~~~ 370 (502)
++..+|...+..... ..++|.|.| -++|++.....|++||+|.-.. +...+ ......+.+.|+|+|+ .++.
T Consensus 129 lR~~~cqg~l~~~~~--pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLl 204 (311)
T KOG1446|consen 129 LRVKKCQGLLNLSGR--PIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILL 204 (311)
T ss_pred ecCCCCceEEecCCC--cceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEE
Confidence 999888877754333 357899999 8888888888999999997632 22222 2346789999999987 7888
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe---eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 447 (502)
Q Consensus 371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~ 447 (502)
++..+.+++.|.-.+ ....++..+...- .+.+|+|++ +++++|+.||+|.+|++.++.. +..+.+
T Consensus 205 sT~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~ 272 (311)
T KOG1446|consen 205 STNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK--VAVLRG 272 (311)
T ss_pred EeCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE--eeEecC
Confidence 889999999999887 4566666555432 577899998 9999999999999999999984 444444
Q ss_pred -CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 448 -KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 448 -~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
+.+++.++.|+|... ++++++ ..+.+|=....
T Consensus 273 ~~~~~~~~~~fnP~~~-mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 273 PNGGPVSCVRFNPRYA-MFVSAS--SNLVFWLPDED 305 (311)
T ss_pred CCCCCccccccCCcee-eeeecC--ceEEEEecccc
Confidence 789999999999876 576554 46888866543
No 87
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.5e-25 Score=223.13 Aligned_cols=231 Identities=14% Similarity=0.195 Sum_probs=170.8
Q ss_pred cceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee
Q 010748 193 PLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 271 (502)
Q Consensus 193 ~~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 271 (502)
.++++| +|+ +++||+|+.||.|+||++........ ........+.+|...|.+
T Consensus 77 V~~laf-------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------------~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 77 ILDLQF-------NPCFSEILASGSEDLTIRVWEIPHNDESVK-------------------EIKDPQCILKGHKKKISI 130 (568)
T ss_pred EEEEEE-------cCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------ccccceEEeecCCCcEEE
Confidence 478888 665 88999999999999999975321000 001122345689999999
Q ss_pred EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee
Q 010748 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (502)
++|+|++..+|++|+.|++|+|||+.+++.+..+. |...|.+++|+|+| .+|++++.|+.|++||++++........|
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99999977678899999999999999998887776 56789999999999 89999999999999999998776655566
Q ss_pred cCCeeE-----EEeCCCCCCEEEEEeCC----CcEEEEECCCCCCCCCCCCCccceEEe--ccCCCeeEEEEcCCCCCEE
Q 010748 352 AADVES-----LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 352 ~~~v~~-----v~~~~~~~~~~~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l 420 (502)
.+.+.+ ..|++++. ++++++.+ +.|++||++.. ..++..+. .+.+.+......+.+ .++
T Consensus 209 ~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~L~p~~D~~tg-~l~ 278 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAPLIPHYDESTG-LIY 278 (568)
T ss_pred cCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccceEEeeeCCCC-CEE
Confidence 665433 23456655 66666555 37999999975 24454443 233333334334444 889
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC
Q 010748 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
++|+.|++|++|++..+....+..+ .+..++.+++|.|...
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~~-~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNEY-KSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeeccc-ccCCCccceEEccccc
Confidence 9999999999999987754333333 3667889999999853
No 88
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-27 Score=241.69 Aligned_cols=304 Identities=22% Similarity=0.345 Sum_probs=233.3
Q ss_pred cccccCCCc-eEEEEEecCC-------cceeEEEEEecCCCCC-CCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 144 DMTINPNDA-VIVCARNEDD-------VSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 144 ~~~~~p~~~-~l~~~~~~~~-------~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
-++|+|.+. ++++|...+. .++++||.++...... ...+..+ .......++.|..+.. .+ .-+||.
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~--~~-~GlIaG 85 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGS--HS-HGLIAG 85 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCC--Cc-cceeec
Confidence 467888887 5555543321 1367888777555410 1112111 1222235777843311 01 135899
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
|..||.|.+|+.... .+............|++.|..|.|++..+++||+|+.+|.|.||
T Consensus 86 G~edG~I~ly~p~~~---------------------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASI---------------------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred cccCCceEEecchhh---------------------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 999999999998642 12223444455668999999999999988999999999999999
Q ss_pred eCCCCeeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec--CCeeEEEeCCCCCCEEEE
Q 010748 295 DVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 295 d~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~ 370 (502)
|+...+.-.++ ....+.|.+++|+..-.++|++++.+|.+.|||+|..+.+..+..+. ..+..++|+|++...+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99876544444 22467899999999888999999999999999999987655443333 347889999998888888
Q ss_pred EeCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748 371 SLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 447 (502)
Q Consensus 371 ~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~ 447 (502)
++.|. .|.+||+|.. ..++..+.+|...|.++.|++.++.+|++++.|+.|.+|+..+++ .+..+..
T Consensus 225 As~dd~~PviqlWDlR~a--------ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--vl~~~p~ 294 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFA--------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--VLGELPA 294 (1049)
T ss_pred ecCCCCCceeEeeccccc--------CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--EeeecCC
Confidence 87655 5999999987 578888899999999999999988999999999999999999988 5777777
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
....++.+.|+|..+.+|++++-+|.|.||.+.+..
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 788999999999999889999999999999997765
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.5e-26 Score=198.42 Aligned_cols=243 Identities=21% Similarity=0.324 Sum_probs=187.6
Q ss_pred CCCC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748 204 KDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 204 ~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
+||| ...+|++|+.||+||+|++.......+ .....|.++|.+++|+.+ +..+
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------------------ka~~~~~~PvL~v~Wsdd-gskV 87 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------------------KAQQSHDGPVLDVCWSDD-GSKV 87 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccc-------------------------hhhhccCCCeEEEEEccC-CceE
Confidence 3477 577888999999999999975322211 123469999999999999 5799
Q ss_pred EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 361 (502)
Q Consensus 283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~ 361 (502)
++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... ..|+|||.|.+|++||+|....+. ....+..+.++..-
T Consensus 88 f~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~~LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TLQLPERVYAADVL 165 (347)
T ss_pred EeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee-eeeccceeeehhcc
Confidence 999999999999999994 566778999999999987652 489999999999999999877655 56677778777654
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
. + +++++..+..|.+|+++++.. ..... ..-.-.+.||+..++. ...+.|+-.|.+-+..+..+.+.
T Consensus 166 ~--p-m~vVata~r~i~vynL~n~~t--------e~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 166 Y--P-MAVVATAERHIAVYNLENPPT--------EFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred C--c-eeEEEecCCcEEEEEcCCCcc--------hhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCcc
Confidence 3 3 788899999999999987632 11111 1123457888888887 55689999999999998876443
Q ss_pred EEEEecCCC---------CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 441 CIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 441 ~~~~~~~~~---------~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
.-+++..|. ..|++++|+|... .|+|+|+||++.+||-.....+..
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhc
Confidence 444444443 3688999999877 699999999999999776655543
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=204.84 Aligned_cols=283 Identities=17% Similarity=0.239 Sum_probs=231.3
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg 219 (502)
..+.++.+.|..+.+++|+.+. .+.+++...++...++..|. ..+.|+.+ +|+...+++++.|-
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~-----~av~~d~~s~q~l~~~~Gh~-------kki~~v~~----~~~~~~v~~aSad~ 283 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDK-----TAVLFDKPSNQILATLKGHT-------KKITSVKF----HKDLDTVITASADE 283 (506)
T ss_pred CCeeEEeecCCCCcceecCCCC-----ceEEEecchhhhhhhccCcc-------eEEEEEEe----ccchhheeecCCcc
Confidence 5688999999989999999886 45555555543334454443 33445433 88999999999999
Q ss_pred cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~ 299 (502)
.|+||....... ......|..+|+.+..+|. +.||++++.||+..+.|++++
T Consensus 284 ~i~vws~~~~s~---------------------------~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g 335 (506)
T KOG0289|consen 284 IIRVWSVPLSSE---------------------------PTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSG 335 (506)
T ss_pred eEEeeccccccC---------------------------ccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCC
Confidence 999999864321 1233479999999999999 569999999999999999999
Q ss_pred eeeEeeccC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748 300 KCNLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 300 ~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v 377 (502)
.++...... .-.+++.+|||+| .+|.+|+.||.|+|||+..+.....+.+|.++|..++|+-+| +++++++.|+.|
T Consensus 336 ~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V 413 (506)
T KOG0289|consen 336 SQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSV 413 (506)
T ss_pred cEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeE
Confidence 988777542 2358999999999 999999999999999999999888778899999999999865 689999999999
Q ss_pred EEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748 378 KGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
++||+|.. +...++... ..++.++.|.+.| .+|+.++.+=+|++++-.+....++..+..|.+..+++.
T Consensus 414 ~lwDLRKl---------~n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~ 483 (506)
T KOG0289|consen 414 KLWDLRKL---------KNFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR 483 (506)
T ss_pred EEEEehhh---------cccceeeccccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceee
Confidence 99999987 344444433 3479999999998 899999888888888877777778888889999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEC
Q 010748 457 FSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 457 ~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
|....++ ++++|.|..++++.+
T Consensus 484 Fg~~aq~-l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQY-LASTSMDAILRLYAL 505 (506)
T ss_pred ecccceE-EeeccchhheEEeec
Confidence 9999885 999999999888764
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=200.62 Aligned_cols=289 Identities=14% Similarity=0.224 Sum_probs=217.6
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecC------CC-----------CCCCeeeeeccccCCCcceeeee
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES------DG-----------GDPNLYVHHHIIIPAFPLCMAWL 199 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~------~~-----------~~~~l~~~~~~~~~~~~~~~~~~ 199 (502)
.|...+.+.+|+|+|.++|+|+.+- +++|...+.. .. -...||-|-+.+ .++.
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~---SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev-----n~l~-- 179 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADA---SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV-----NDLD-- 179 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcc---eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc-----ccee--
Confidence 5889999999999999999999886 5566555410 00 011233333222 3443
Q ss_pred cCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748 200 DCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 200 ~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
|+|....|++|+.|++|++||+..... +..+.......+|.+|+|+|. +
T Consensus 180 -----FHPre~ILiS~srD~tvKlFDfsK~sa-------------------------KrA~K~~qd~~~vrsiSfHPs-G 228 (430)
T KOG0640|consen 180 -----FHPRETILISGSRDNTVKLFDFSKTSA-------------------------KRAFKVFQDTEPVRSISFHPS-G 228 (430)
T ss_pred -----ecchhheEEeccCCCeEEEEecccHHH-------------------------HHHHHHhhccceeeeEeecCC-C
Confidence 489999999999999999999963211 111112235678999999999 5
Q ss_pred cEEEEEecCCcEEEEeCCCCeeeEee---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-ee-cCC
Q 010748 280 NILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV-AAD 354 (502)
Q Consensus 280 ~~l~sgs~dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~-~~~ 354 (502)
.+|+.|..-.++++||+++-+|...- ..|++.|+++.+++.+ ++.++|+.||.|++||--+.+++.... .| ...
T Consensus 229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 59999999999999999999887654 4699999999999999 999999999999999988888765433 33 456
Q ss_pred eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-----CCCeeEEEEcCCCCCEEEEEe-CCCc
Q 010748 355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGS-TDKM 428 (502)
Q Consensus 355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~t~s-~dg~ 428 (502)
|.+..|..++. ++++++.|..+++|.+.++ .++....+- ..--+...|+... .+++.-. ..+.
T Consensus 308 vcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~---------R~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~s 376 (430)
T KOG0640|consen 308 VCSAVFTKNGK-YILSSGKDSTVKLWEISTG---------RMLKEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNS 376 (430)
T ss_pred eeeEEEccCCe-EEeecCCcceeeeeeecCC---------ceEEEEecCCcccchhhhhhhhhcCcc-ceEEccccccCc
Confidence 99999999765 8999999999999999987 555555432 1122344566654 4554433 3577
Q ss_pred EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
+.-||.++.....+.. .+|.+.+..+.-+|.++ .+++|+.|-.+++|--+
T Consensus 377 lcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 377 LCSWDARTADRVALLS-LGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeccccchhhhhhcc-cCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 9999999987544443 47999999999999999 59999999999999643
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-26 Score=219.69 Aligned_cols=246 Identities=21% Similarity=0.366 Sum_probs=204.5
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
+.+.|.++.|+|+|.+|++|...+ .+.||....... ...+..+|... .-|++| ++..+.+|+.
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g---~v~iwD~~~~k~-~~~~~~~h~~r----vg~laW---------~~~~lssGsr 278 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDG---TVQIWDVKEQKK-TRTLRGSHASR----VGSLAW---------NSSVLSSGSR 278 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCC---eEEEEehhhccc-cccccCCcCce----eEEEec---------cCceEEEecC
Confidence 378999999999999999999988 445555444332 23444445333 379999 3889999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
++.|.++|+...+... ..+.+|...|..|+|+++ ..+||+|+.|+.|.|||..
T Consensus 279 ~~~I~~~dvR~~~~~~--------------------------~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVV--------------------------STLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred CCcEEEEEEecchhhh--------------------------hhhhcccceeeeeEECCC-CCeeccCCCccceEeccCC
Confidence 9999999997543221 136689999999999999 6699999999999999998
Q ss_pred CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEE-EeCC
Q 010748 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLED 374 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~~~d 374 (502)
...+...+..|.+.|.+++|+|-...+||+|+ .|+.|++||..++.... .....+.|.+|.|++....++.+ |..+
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-~vdtgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-SVDTGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-ccccCCceeeEEEcCCCCEEEEecCCCC
Confidence 88899999999999999999999888999975 59999999999877655 55667899999999987544443 4677
Q ss_pred CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
+.|.+|...+. ..+..+.+|...|..++++|++ ..+++|+.|.++++|++-...
T Consensus 411 n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 411 NQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CcEEEEecccc---------ceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence 78999999986 7889999999999999999998 999999999999999987653
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=208.44 Aligned_cols=250 Identities=18% Similarity=0.272 Sum_probs=200.2
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
.||++|+|||+++.|.+..||.+... ...+..+.+.+|..+|..+.|+|+ ..+|+
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d------------------------~~~kl~~tlvgh~~~V~yi~wSPD-dryLl 285 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYD------------------------VHFKLKKTLVGHSQPVSYIMWSPD-DRYLL 285 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecC------------------------cceeeeeeeecccCceEEEEECCC-CCeEE
Confidence 35999999999999999999997521 113455667799999999999999 45888
Q ss_pred EEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 284 SASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 284 sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
+|+.+..+++||+.+|.+.+.+. +|...+++++|.|++ ..+++|+.|+++..||+.....-.........|.+++..+
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence 89999999999999999988874 356889999999999 8899999999999999987654433333345699999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~ 442 (502)
+|. .+++.+.|..|++|+..+. .. ..+.....+|+++++|.++ +++++.-.+..+++||+.... .+
T Consensus 365 Dgk-~vl~v~~d~~i~l~~~e~~---------~d-r~lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~--lv 430 (519)
T KOG0293|consen 365 DGK-YVLLVTVDKKIRLYNREAR---------VD-RGLISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENK--LV 430 (519)
T ss_pred CCc-EEEEEecccceeeechhhh---------hh-hccccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhh--HH
Confidence 987 6777778999999998764 11 2234456789999999998 888888889999999999665 56
Q ss_pred EEecCCCCc--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748 443 ASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 443 ~~~~~~~~~--v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
..+.+|... +..-+|---..-++|+|+.|+.|+||+..+++++..+-+|..
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~ 483 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK 483 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence 666676543 444456544323699999999999999999999988877753
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.5e-25 Score=216.03 Aligned_cols=278 Identities=19% Similarity=0.338 Sum_probs=214.9
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCC-CCCCEEEE
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR-EKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~la~ 214 (502)
..|+..|..+++-+.. .+++++-++ +++||.- ... ....+|...-+ ..|+.+.+.+. .++-.|++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~---t~~vw~~--~~~---~~l~~~~~~~~-----~g~i~~~i~y~e~~~~~l~~ 76 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDG---TVKVWAK--KGK---QYLETHAFEGP-----KGFIANSICYAESDKGRLVV 76 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCC---ceeeeec--cCc---ccccceecccC-----cceeeccceeccccCcceEe
Confidence 4578888887766555 566676666 3455543 332 22222221110 11111111112 25667999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
|++|..|.+|.+.... +...+.+|...|.|++...+ . .++|||.|.++++|
T Consensus 77 g~~D~~i~v~~~~~~~---------------------------P~~~LkgH~snVC~ls~~~~-~-~~iSgSWD~TakvW 127 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAE---------------------------PLYTLKGHKSNVCSLSIGED-G-TLISGSWDSTAKVW 127 (745)
T ss_pred ecccceEEEEecCCCC---------------------------chhhhhccccceeeeecCCc-C-ceEecccccceEEe
Confidence 9999999999987533 33456799999999998777 3 38999999999999
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d 374 (502)
-+ +++...+.+|+..|+++..-|.+ .++||+.|.+|++|.- ++....+.+|...|+.+++-+++ .|++++.|
T Consensus 128 ~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~flScsND 199 (745)
T KOG0301|consen 128 RI--GELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSND 199 (745)
T ss_pred cc--hhhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--CeEeecCC
Confidence 74 56777799999999999999987 7999999999999987 44555567899999999999865 49999999
Q ss_pred CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 454 (502)
Q Consensus 375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 454 (502)
|.|++|++. + ..+..+.+|+..|.+++..+++ ..+++++.|++++||+.. .+...+......|++
T Consensus 200 g~Ir~w~~~-g---------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWs 264 (745)
T KOG0301|consen 200 GSIRLWDLD-G---------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWS 264 (745)
T ss_pred ceEEEEecc-C---------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC----ceEEEEecCccceEE
Confidence 999999994 3 7899999999999999977766 899999999999999976 356666655668999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 455 VAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 455 ~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+.+-++|. +++|++||.||||....
T Consensus 265 a~~L~NgD--Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 265 AKVLLNGD--IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEeeCCC--EEEeccCceEEEEEecc
Confidence 99999997 88899999999999874
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=7.8e-27 Score=212.09 Aligned_cols=245 Identities=20% Similarity=0.281 Sum_probs=198.9
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
++...|++|+.|..|.+|++.... ......+.+..++|+++.|.++ +..+++++
T Consensus 185 ~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~g~it~~d~d~~-~~~~iAas 238 (459)
T KOG0288|consen 185 RNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSLGNITSIDFDSD-NKHVIAAS 238 (459)
T ss_pred cCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccCCCcceeeecCC-CceEEeec
Confidence 667899999999999999986422 2233455677789999999999 56788889
Q ss_pred cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 366 (502)
.|+.+++|++...+...++.+|+++|+++.|.... ..+++|+.|.+|++||+....+.... -..+.+..++.++ .
T Consensus 239 ~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~~---~ 313 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCSI---S 313 (459)
T ss_pred CCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc-cccccccceEecc---e
Confidence 99999999999999999999999999999998877 55999999999999999986665432 2334455555553 3
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.+++|..|+.|++||.|+. .++.....+. .|+++..++++ ..|++++.|.++.+.|+++......+.-.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred eeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeecc
Confidence 6899999999999999987 6677777665 89999999998 77888899999999999998754444333
Q ss_pred CC--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 447 PK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 447 ~~--~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+. ....+.+.|||++.| +++||.||.|+||++.++++....-.....
T Consensus 383 g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~ 431 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSLSTSN 431 (459)
T ss_pred ccccccccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence 22 234789999999997 889999999999999999987665544433
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=203.75 Aligned_cols=218 Identities=24% Similarity=0.395 Sum_probs=182.3
Q ss_pred cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC------------C------eeeEeeccCCCCeEEEEEcCCCC
Q 010748 261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA------------G------KCNLTLEHHTDKVQAVAWNHHSP 322 (502)
Q Consensus 261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~------------~------~~~~~~~~h~~~v~~l~~~~~~~ 322 (502)
.+..|+.++.+.+|+|+ +.++|+||.|..|+|.|++. + -.++++..|...|+++.|+|..
T Consensus 107 ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 45689999999999999 56999999999999999861 1 2467888899999999999999
Q ss_pred cEEEEEeCCCcEEEEecCCCCCcc--ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE
Q 010748 323 QILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 400 (502)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 400 (502)
.+|++|+.|++|++||+....... ..+....+|.+++|+|.|. ++++|+.-..+++||+.+.+.. .+...-
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcf------vsanPd 257 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCF------VSANPD 257 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEe------eecCcc
Confidence 999999999999999998755432 2334567899999999876 8999999999999999987321 111223
Q ss_pred eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-CC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 401 ~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-~~-~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
..|++.|+++.+++.+ ++.+|++.||.|++||--+++ |+.++. .| ...|.+..|..+++| +.++|.|..+++|.
T Consensus 258 ~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGKDSTVKLWE 333 (430)
T ss_pred cccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeE-EeecCCcceeeeee
Confidence 5689999999999998 999999999999999988877 555442 34 456999999999998 67788999999999
Q ss_pred CCCCccccccccC
Q 010748 479 TLSDAGISNRFSK 491 (502)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (502)
+.++.++.+..+.
T Consensus 334 i~t~R~l~~YtGA 346 (430)
T KOG0640|consen 334 ISTGRMLKEYTGA 346 (430)
T ss_pred ecCCceEEEEecC
Confidence 9999999888765
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=206.05 Aligned_cols=254 Identities=19% Similarity=0.242 Sum_probs=205.8
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|+..++++++.+|+|.-|++.++....-...-. . ..+...........+|...|.+++.+++ +.+||+|
T Consensus 151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~---e------v~k~~~~~~k~~r~~h~keil~~avS~D-gkylatg 220 (479)
T KOG0299|consen 151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD---E------VLKSHGNPLKESRKGHVKEILTLAVSSD-GKYLATG 220 (479)
T ss_pred eccccceeecCCCcceeeeehhcCcccccccccc---h------hhhhccCCCCcccccccceeEEEEEcCC-CcEEEec
Confidence 7999999999999999999998765431111000 0 0000111111111489999999999999 5699999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 365 (502)
+.|..|.||+..+.+.++.+.+|.+.|.+++|-... +.|++++.|++|++|++.....+..+++|+..|..+....-.
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re- 298 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE- 298 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-
Confidence 999999999999999999999999999999998766 889999999999999999988888899999999999877644
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010748 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
..+.+|+.|+++++|++.. .....+.+|.+.+-|++|-.+ ..+++|+.+|.|.+|++...+|.++...
T Consensus 299 R~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 299 RCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred ceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeec
Confidence 4677788999999999953 445567788999999999874 6899999999999999999987665544
Q ss_pred cCC----------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 446 NPK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 446 ~~~----------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
..+ ...|++++..|... |+|+|+.+|.|++|.+..+-.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc
Confidence 322 12789999999888 799999999999999998844
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=8.1e-26 Score=209.96 Aligned_cols=288 Identities=17% Similarity=0.297 Sum_probs=231.5
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
-.|.+-|.++.|+...+.+.+|+.. .++||.+.....+.+ ..+-++..+.--+.. ....|+|+-|++|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkg----cVKVWdis~pg~k~P--vsqLdcl~rdnyiRS------ckL~pdgrtLivG 483 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKG----CVKVWDISQPGNKSP--VSQLDCLNRDNYIRS------CKLLPDGRTLIVG 483 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCC----eEEEeeccCCCCCCc--cccccccCcccceee------eEecCCCceEEec
Confidence 3577788999999888888888755 478998877654221 122222211111111 1126899999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+.-.++.|||+.... ..++..+....-++.+|+.+|+ .++.++|..||.|.|||
T Consensus 484 GeastlsiWDLAapT-------------------------prikaeltssapaCyALa~spD-akvcFsccsdGnI~vwD 537 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWD 537 (705)
T ss_pred cccceeeeeeccCCC-------------------------cchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEE
Confidence 999999999997522 2222333445567889999999 77999999999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg 375 (502)
+.+...++.|++|++.+.||..+++| ..|-||+.|.+|+.||+|..+... .....+.|.++.++|.+. .+++|..++
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qhdF~SQIfSLg~cP~~d-WlavGMens 614 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QHDFSSQIFSLGYCPTGD-WLAVGMENS 614 (705)
T ss_pred cccceeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hhhhhhhheecccCCCcc-ceeeecccC
Confidence 99999999999999999999999999 889999999999999999887654 456678899999999876 799999999
Q ss_pred cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEE
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 455 (502)
.+.+..... ...+.+..|...|.++.|.+.| +++++.+.|+.+..|.+.-+. .++... -..+|.++
T Consensus 615 ~vevlh~sk----------p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa--siFqsk-E~SsVlsC 680 (705)
T KOG0639|consen 615 NVEVLHTSK----------PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA--SIFQSK-ESSSVLSC 680 (705)
T ss_pred cEEEEecCC----------ccceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc--ceeecc-ccCcceee
Confidence 999888774 4567788899999999999998 999999999999999998876 444443 35789999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 456 AFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 456 ~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
.++.+.+| ++||+.+....||.+
T Consensus 681 DIS~ddky-IVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 681 DISFDDKY-IVTGSGDKKATVYEV 703 (705)
T ss_pred eeccCceE-EEecCCCcceEEEEE
Confidence 99999995 999999988888875
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=203.78 Aligned_cols=230 Identities=22% Similarity=0.321 Sum_probs=195.5
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
+..+.+++|+.|..+.++|..+ .+....+.||+..|+.+.++|+ ...+++++
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s---------------------------~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aS 280 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPS---------------------------NQILATLKGHTKKITSVKFHKD-LDTVITAS 280 (506)
T ss_pred CCCCcceecCCCCceEEEecch---------------------------hhhhhhccCcceEEEEEEeccc-hhheeecC
Confidence 4468899999999999999875 3344467799999999999999 56899999
Q ss_pred cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--ecCCeeEEEeCCCC
Q 010748 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHA 364 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~ 364 (502)
.|..|+||......+......|..+|+.+..+|.| .+|++++.||+..+.|++++........ ..-.+++.+|+|+|
T Consensus 281 ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 281 ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred CcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence 99999999998888888888999999999999999 9999999999999999999887653332 22358999999987
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
- +|.+|+.||.|++||+.+. ..+..+.+|+++|..++|+.+| .+|++++.|+.|++||++..+....+.
T Consensus 360 L-ifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 360 L-IFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred e-EEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceee
Confidence 5 8999999999999999987 5788899999999999999998 999999999999999999877444444
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
.... ..+.++.|.+.|.| |+.+|.+=.|++++
T Consensus 429 l~~~-~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 429 LDEK-KEVNSLSFDQSGTY-LGIAGSDLQVYICK 460 (506)
T ss_pred cccc-ccceeEEEcCCCCe-EEeecceeEEEEEe
Confidence 4333 37999999999997 66677765555555
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=201.79 Aligned_cols=252 Identities=22% Similarity=0.354 Sum_probs=199.8
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+..++|+-+..|.|+||++...-.. +.... ...+.+..++.+.+.+|...=++|+|||-....|+||..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~-----l~~~~------~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNA-----LSEPG------LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhh-----hcCcc------ccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 5677888888999999998632111 10000 012235567788899999999999999964446889988
Q ss_pred CCcEEEEeCCCCee---eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc--cceEeecCCeeEEEeCC
Q 010748 288 DKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWDP 362 (502)
Q Consensus 288 dg~v~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~ 362 (502)
-+.|++|...++.- ...|.+|+..|-.|+|+|....+|++||.||+|+|||+|..... .....|.+.|+.+.|+.
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR 312 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC
Confidence 89999999988753 23466799999999999999899999999999999999987432 23457889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC----
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---- 438 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~---- 438 (502)
.-+ +|++|+.+|+++|||+|+.+. .+++..+..|..+|++|.|+|.....|++++.|.+|.+||+.-..
T Consensus 313 ~~~-lLasG~DdGt~~iwDLR~~~~------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 313 REP-LLASGGDDGTLSIWDLRQFKS------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred Ccc-eeeecCCCceEEEEEhhhccC------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 766 899999999999999998754 578999999999999999999887899999999999999985421
Q ss_pred -------------eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 439 -------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 439 -------------~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
|.+++...+ ...|--+.|++.-+.+|++.+.+| +.||..
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred hccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 123333333 345788999999888888888887 666653
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.6e-24 Score=186.05 Aligned_cols=276 Identities=15% Similarity=0.229 Sum_probs=223.6
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
..|...+.+++|+-+|..|++|+.++ ++.||..+..... ....+.|+..+ -.+.|- .+...+|++
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dk---tv~v~n~e~~r~~~~~~~~gh~~sv-----dql~w~------~~~~d~~at 82 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDK---TVSVWNLERDRFRKELVYRGHTDSV-----DQLCWD------PKHPDLFAT 82 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCC---ceEEEEecchhhhhhhcccCCCcch-----hhheeC------CCCCcceEE
Confidence 45778899999999999999999987 5678877655321 12344566444 355663 456889999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
++.|.+|++||+....+..... .+..=.-+.|+|+ +.+++.++.|..|...
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~----------------------------~~~eni~i~wsp~-g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIE----------------------------TKGENINITWSPD-GEYIAVGNKDDRITFI 133 (313)
T ss_pred ecCCceEEEEEeccCcEEEEee----------------------------ccCcceEEEEcCC-CCEEEEecCcccEEEE
Confidence 9999999999997654432211 1222345789999 5599999999999999
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCC
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~d 374 (502)
|.++.+.+...+ ..-.+.-+.|+..+ .+|+.....|.|.|.....-+++.....|+....|+.|+|+|. +|++|+.|
T Consensus 134 d~r~~~~~~~~~-~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsAD 210 (313)
T KOG1407|consen 134 DARTYKIVNEEQ-FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSAD 210 (313)
T ss_pred Eecccceeehhc-ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeecccc
Confidence 999988887776 45667888999666 7777777789999999888888887889999999999999876 89999999
Q ss_pred CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 454 (502)
Q Consensus 375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 454 (502)
..+.+||+... .+++.+..+.-+|..++|+.+| ++||+||.|..|-|=++.++. .+..++ +.++.+.
T Consensus 211 AlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd--~~~eI~-~~~~t~t 277 (313)
T KOG1407|consen 211 ALVSLWDVDEL---------ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD--RVWEIP-CEGPTFT 277 (313)
T ss_pred ceeeccChhHh---------hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC--eEEEee-ccCCcee
Confidence 99999999986 7889999999999999999998 999999999999999999998 455543 6789999
Q ss_pred EEEcCCCCcEEEEEeCC
Q 010748 455 VAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 455 ~~~spd~~~ll~sg~~d 471 (502)
++|+|..+ |||-++.|
T Consensus 278 VAWHPk~~-LLAyA~dd 293 (313)
T KOG1407|consen 278 VAWHPKRP-LLAYACDD 293 (313)
T ss_pred EEecCCCc-eeeEEecC
Confidence 99999988 67766655
No 102
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-25 Score=208.04 Aligned_cols=280 Identities=18% Similarity=0.261 Sum_probs=216.9
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCC
Q 010748 152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE 231 (502)
Q Consensus 152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~ 231 (502)
.+++++..... .|.+|.+.... ..+...++|+...|++- +|.|.||+.|+..|.|++|.+.++..
T Consensus 51 ~yllsaq~~rp--~l~vw~i~k~~------~~~q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lYlWelssG~L 115 (476)
T KOG0646|consen 51 EYLLSAQLKRP--LLHVWEILKKD------QVVQYIVLPGPVHALAS-------SNLGYFLLAGTISGNLYLWELSSGIL 115 (476)
T ss_pred hheeeecccCc--cccccccCchh------hhhhhcccccceeeeec-------CCCceEEEeecccCcEEEEEeccccH
Confidence 56777765553 45555554332 23466778888888765 68899999999999999999987654
Q ss_pred cCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC---------CCeee
Q 010748 232 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKCN 302 (502)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~---------~~~~~ 302 (502)
+. .+.+|-..|+||.|+.+ +.+|+|||.||.|.+|.+. +.++.
T Consensus 116 L~---------------------------v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 116 LN---------------------------VLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred HH---------------------------HHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 33 44589999999999999 5699999999999999874 34678
Q ss_pred EeeccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE
Q 010748 303 LTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381 (502)
Q Consensus 303 ~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d 381 (502)
+.|..|+-+|+.+...+.+ ..+|+|+|.|.++++||+..+.... ....+..+.+++.+|. ...+++|+.+|.|.+.+
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-ti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-TITFPSSIKAVALDPA-ERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-EEecCCcceeEEEccc-ccEEEecCCcceEEeee
Confidence 8999999999999988763 3689999999999999999886554 5677889999999995 55899999999999998
Q ss_pred CCCCCCCCC-------CCCCccceEEeccCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcE
Q 010748 382 IRTAKSDPD-------STSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 452 (502)
Q Consensus 382 ~~~~~~~~~-------~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v 452 (502)
+........ ......+..+.+|.. .|+|++++-+| .+|++|+.||.|+|||+.+.+ ++.++....++|
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpV 322 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPV 322 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH--HHHHHhhhcccc
Confidence 876542111 112344567778887 99999999998 999999999999999999887 566665567899
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 453 FSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 453 ~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
+.+.+.|-.+-.+..-...-.+-+|++
T Consensus 323 tnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 323 TNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred ceeEeeccccceecccccCccCCchHh
Confidence 999997765533332233334445544
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=5.7e-25 Score=189.32 Aligned_cols=226 Identities=18% Similarity=0.302 Sum_probs=196.9
Q ss_pred cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
.+.+|..+++.|.++.+ +.+|++|+.|.++.||-..+|..+.++.+|++.|+|+....+. ..+++|+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence 35689999999999999 5699999999999999988999999999999999999999888 899999999999999999
Q ss_pred CCCCccceEeecCCeeEEEeCCCCCCEEEEEe-----CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748 341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 341 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
+++... .+..+.+|..+.|++.+. ++++++ ..+.|.++|++....... ...|...+..+...++++-|.|.
T Consensus 83 tGk~la-~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 83 TGKQLA-TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDID--SEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred CCcEEE-EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhc--ccCceEEecCCccceeeeeeccc
Confidence 998776 788899999999999765 555554 346799999996532211 14678889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
+ .+|++|..+|.|..||++++.. .+.....|...|+.++++|+..| +++|+.|.+-++||+.+-+.+++....++..
T Consensus 159 ~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~PvN 235 (327)
T KOG0643|consen 159 G-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPVN 235 (327)
T ss_pred C-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeeccccc
Confidence 8 9999999999999999999863 56666778889999999999995 9999999999999999999888777665543
No 104
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=7.8e-25 Score=212.65 Aligned_cols=243 Identities=22% Similarity=0.353 Sum_probs=210.7
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
|.+...+++|+ .+.|.||+.++..+...+ -..-+.+..|-|. ..++++|
T Consensus 382 S~d~~~~~Sga-~~SikiWn~~t~kciRTi-----------------------------~~~y~l~~~Fvpg-d~~Iv~G 430 (888)
T KOG0306|consen 382 SSDSILLASGA-GESIKIWNRDTLKCIRTI-----------------------------TCGYILASKFVPG-DRYIVLG 430 (888)
T ss_pred ecCceeeeecC-CCcEEEEEccCcceeEEe-----------------------------ccccEEEEEecCC-CceEEEe
Confidence 56666666665 579999999887665532 2247889999998 5699999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC------c------cceEeecC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------S------GFKWAVAA 353 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~------~~~~~~~~ 353 (502)
...|.+.+||+.+...+.+++.|.+.|.+++.+|++ ..+++||.|.+|++||..--.. . ........
T Consensus 431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred ccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 999999999999999999999999999999999999 8899999999999999752111 0 12334577
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.|.|+.++|++. +++++--|.+|++|-+.+. +...++.+|.-||.|+.++|++ .+++|||.|.+|++|-
T Consensus 510 dvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWG 578 (888)
T KOG0306|consen 510 DVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWG 578 (888)
T ss_pred cEEEEEEcCCCc-EEEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCCc-CeEEeccCCCceEEec
Confidence 899999999876 8999999999999999987 7788999999999999999998 9999999999999999
Q ss_pred CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+.-+. |-.++.+|...|.++.|.|... ++.++|.|+.|+-||-...++++.+.+|+..
T Consensus 579 LdFGD--CHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 579 LDFGD--CHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred cccch--hhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheeeccchhe
Confidence 98888 7888899999999999999776 6899999999999999999999988888654
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=208.59 Aligned_cols=212 Identities=21% Similarity=0.260 Sum_probs=182.0
Q ss_pred ccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748 262 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 262 ~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~ 341 (502)
+......|.++.|-.+ +.+||+|...|.|+|+|+.+...++.+.+|+.+|..+.|+|++...|++|+.|+.+++||+.+
T Consensus 64 ~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred HHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3346688999999999 559999999999999998887788899999999999999999989999999999999999998
Q ss_pred CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421 (502)
Q Consensus 342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 421 (502)
........+|..-|.|.+|+|....++++|+-||.|++||+|.. . ....-..|..+|.++.+-|.| .+++
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~--------~-~~v~elnhg~pVe~vl~lpsg-s~ia 212 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL--------T-SRVVELNHGCPVESVLALPSG-SLIA 212 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC--------C-ceeEEecCCCceeeEEEcCCC-CEEE
Confidence 87654566889999999999998889999999999999999986 2 333344599999999999987 8888
Q ss_pred EEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
+++. ..|+|||+.++.. .+.....|...|+|+.+..++. .|++||-|+.|++||+.+-+.+..
T Consensus 213 sAgG-n~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 213 SAGG-NSVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred EcCC-CeEEEEEecCCce-ehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEEe
Confidence 8875 4699999997653 4445555889999999999987 699999999999999877666543
No 106
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=220.81 Aligned_cols=218 Identities=15% Similarity=0.269 Sum_probs=181.0
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC---------------------------------------------
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--------------------------------------------- 298 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~--------------------------------------------- 298 (502)
.|.++|+++.|+++ +.+||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 89999999999999 56999999999999998654
Q ss_pred ---------------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748 299 ---------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 299 ---------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 363 (502)
.++++.|.+|.+.|..|.|+.++ +|++++.|.+|+||++....+.. .+.|..-|+||+|+|.
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~-~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLK-VFSHNDFVTCVAFNPV 420 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceee-EEecCCeeEEEEeccc
Confidence 02234567899999999999876 99999999999999999888776 7899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
..++|++|+-||.|+||++... .+.....-..-|++++|.|+| +..+.|+.+|.+++|+....+.....
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~----------~Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDK----------KVVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred CCCcEeecccccceEEeecCcC----------eeEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEee
Confidence 9999999999999999999864 333344445889999999998 99999999999999999988754443
Q ss_pred EecCC------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCC
Q 010748 444 SRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK 496 (502)
Q Consensus 444 ~~~~~------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 496 (502)
.+..| ...|+.+.|.|..+-.|++.+.|..|+|||.+....+...-+.+....
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S 548 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS 548 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc
Confidence 33332 237999999987654455668999999999988777766655555443
No 107
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=198.06 Aligned_cols=242 Identities=20% Similarity=0.266 Sum_probs=188.3
Q ss_pred CceEEEEEecCCcceeEEEEEecCCCCCCCeee-------------------eeccccCCCcceeeeecCCCCCCCCCCE
Q 010748 151 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-------------------HHHIIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 151 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 211 (502)
||++|+|+.+. .+.||.++....-.|.+.. +|.-. .+.+.|.. .-.+.
T Consensus 192 gNyvAiGtmdp---~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTda----vl~Ls~n~------~~~nV 258 (463)
T KOG0270|consen 192 GNYVAIGTMDP---EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDA----VLALSWNR------NFRNV 258 (463)
T ss_pred cceEEEeccCc---eeEEeccccccccccceeechhhhhhhhhhcccccccccchHH----HHHHHhcc------cccee
Confidence 78999999987 6799988866653333321 12111 14566642 24789
Q ss_pred EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 291 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v 291 (502)
||+|+.|.+|.+||++++++.. .+..|...|.+++|+|..+.+|++||.|++|
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred EEecCCCceEEEEEcCCCCcce---------------------------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 9999999999999999765433 3446999999999999989999999999999
Q ss_pred EEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CccceEeecCCeeEEEeCCCCCCEEEE
Q 010748 292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~ 370 (502)
.+.|.+...+....-...+.|-.+.|.|.....+++++.||+|+-+|+|... +......|..+|.++++++..++++++
T Consensus 312 ~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 312 ALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred EeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence 9999985433322222567899999999999999999999999999999984 455566899999999999999999999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
++.++.|++|++..... ..+..-.-.-+...|+++.|+-..+|+.|+..+.++|||+.+..+
T Consensus 392 ~s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 99999999999976532 112111111234788899998888999999999999999987753
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=190.20 Aligned_cols=317 Identities=17% Similarity=0.262 Sum_probs=240.0
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
..|.+.|..++-....+++.+++.+. +-.||.++.+.. ...|..|...+ .|+.+ ++.+.+++++
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADh---TA~iWs~Esg~C--L~~Y~GH~GSV----Nsikf-------h~s~~L~lTa 208 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADH---TARIWSLESGAC--LATYTGHTGSV----NSIKF-------HNSGLLLLTA 208 (481)
T ss_pred cccccceeeehhhcCCcceeeccccc---ceeEEeeccccc--eeeecccccce----eeEEe-------ccccceEEEc
Confidence 57899999999999999888888886 558888887663 23355554433 45544 7889999999
Q ss_pred cCCCcEEEeeCCCC----CCcCcceecCCcchh---h-hhhcc--ccC---CcccccccccCcccceeeEEeccCCCcEE
Q 010748 216 SMEPAIEIWDLDVI----DEVQPHVILGGIDEE---K-KKKKS--KKG---KKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 216 ~~dg~I~iwdl~~~----~~~~~~~~l~~~~~~---~-~~~~~--~~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
+.|++..||..... ....+.-..+..... . ..... .+. ....+...+.+|...|.+..|... +..+
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~ 287 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQM 287 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-ccee
Confidence 99999999984321 111111111110000 0 00000 011 123345567899999999999987 5689
Q ss_pred EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeC
Q 010748 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWD 361 (502)
Q Consensus 283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~ 361 (502)
+++|.|.+..+||++++.++..+.+|....+.++-+|.. +++++++.|.+.++||+|..-. +..+.+|...|+++.|.
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 999999999999999999999999999999999999998 9999999999999999994332 34566889999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
.+. .+++|+.|.+|++||+++. ..++.++. ...+++.++.+..+ ..|+.-..+..|++||+...+...
T Consensus 367 ~dd--~vVSgSDDrTvKvWdLrNM--------RsplATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 367 TDD--RVVSGSDDRTVKVWDLRNM--------RSPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred cCC--ceeecCCCceEEEeeeccc--------cCcceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCcccc
Confidence 854 5999999999999999998 46666665 46778999998855 688888888899999998876422
Q ss_pred --EEEecCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCC
Q 010748 442 --IASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 442 --~~~~~~~~~~v~~~~~spd~~~-ll~sg~~dg~i~vwd~~~~ 482 (502)
.....+|...|.|++|..+.+. -|.++|.|..+.-|.+...
T Consensus 435 lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 435 LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 2356788899999999765421 1678899999999998654
No 109
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=191.05 Aligned_cols=245 Identities=22% Similarity=0.346 Sum_probs=194.6
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
+.|...|....+..+-...|+|..+= +-+||.--.+.. ..-+.|..++ -.+ +|+.+.++|++|
T Consensus 56 eghkgavw~~~l~~na~~aasaaadf---takvw~a~tgde--lhsf~hkhiv-----k~~-------af~~ds~~lltg 118 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADF---TAKVWDAVTGDE--LHSFEHKHIV-----KAV-------AFSQDSNYLLTG 118 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccc---hhhhhhhhhhhh--hhhhhhhhee-----eeE-------Eecccchhhhcc
Confidence 56788888888877777777776553 346665544432 1223333322 233 348899999999
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
+++..+||||++..+ .+...+.+|++.|..+-|... .+.++|.+.|++|++||
T Consensus 119 g~ekllrvfdln~p~--------------------------App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPK--------------------------APPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWD 171 (334)
T ss_pred chHHHhhhhhccCCC--------------------------CCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEE
Confidence 999999999998532 222345689999999999887 56788889999999999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg 375 (502)
.++++.++++. ...+|+++..+++| + +++....+.|.+||..+..... ....+..|++.+.+|.. .++++|+.|.
T Consensus 172 ~rTgt~v~sL~-~~s~VtSlEvs~dG-~-ilTia~gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P~k-~~fVaGged~ 246 (334)
T KOG0278|consen 172 HRTGTEVQSLE-FNSPVTSLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLLK-SYKMPCNVESASLHPKK-EFFVAGGEDF 246 (334)
T ss_pred eccCcEEEEEe-cCCCCcceeeccCC-C-EEEEecCceeEEecccccccee-eccCccccccccccCCC-ceEEecCcce
Confidence 99999999997 57889999999999 4 5666778899999999877654 55677889999999976 6899999999
Q ss_pred cEEEEECCCCCCCCCCCCCccceE-EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
.++.||..++ .-+-. ..+|.++|.|+.|+|+| .+.++||.||+|+||.+..++.
T Consensus 247 ~~~kfDy~Tg---------eEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 247 KVYKFDYNTG---------EEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEEeccCC---------ceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence 9999999998 33333 48899999999999998 8999999999999999877663
No 110
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-24 Score=198.20 Aligned_cols=293 Identities=15% Similarity=0.229 Sum_probs=224.2
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEecC
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSM 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~la~g~~ 217 (502)
...|++++|||.-.+|++|+.++ .++||-.+.... . .-+.+.+..+|+..+- |.|+|. .+++++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~---~lrifqvDGk~N---~--~lqS~~l~~fPi~~a~------f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDG---TLRIFQVDGKVN---P--KLQSIHLEKFPIQKAE------FAPNGHSVIFTSGR 278 (514)
T ss_pred cCCceEEEecCCCceEEEecCCC---cEEEEEecCccC---h--hheeeeeccCccceee------ecCCCceEEEeccc
Confidence 36799999999999999999997 678887776654 2 1222335566654432 278888 9999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc-ccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
...++.||+.+..... ...+.++ ...+.....+++ +++|+..+..|.|.|...
T Consensus 279 rky~ysyDle~ak~~k-------------------------~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTK-------------------------LKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHA 332 (514)
T ss_pred ceEEEEeecccccccc-------------------------ccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehh
Confidence 9999999997532211 1111223 345777888999 669999999999999999
Q ss_pred CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCe--eEEEeCCCCCCEEEEEeCC
Q 010748 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV--ESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~~~~~~~d 374 (502)
.++..+.+++ -.+.|..++|+.++ ..|++++.+|.|.+||++...+.. .+.-.+.| ++++.++++. +|++|+..
T Consensus 333 kT~eli~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~v~gts~~~S~ng~-ylA~GS~~ 408 (514)
T KOG2055|consen 333 KTKELITSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLH-RFVDDGSVHGTSLCISLNGS-YLATGSDS 408 (514)
T ss_pred hhhhhhheee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEE-EEeecCccceeeeeecCCCc-eEEeccCc
Confidence 9999999987 57899999999998 888888889999999999986554 55555554 5666678766 89999999
Q ss_pred CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEE-EecCCCCc
Q 010748 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIA-SRNPKAGA 451 (502)
Q Consensus 375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~-~~~~~~~~ 451 (502)
|.|.|||..+...... .+|+..+..-...|+++.|+|+. .+||.+|. ...+|+-.+.+.....-+ ......+.
T Consensus 409 GiVNIYd~~s~~~s~~---PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~ 484 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTN---PKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH 484 (514)
T ss_pred ceEEEeccchhhccCC---CCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence 9999999765432222 37888888888999999999998 88888875 667999888765411101 11334567
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 452 v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
|+||+|+|.+.| ||.|...|.+.+|.+.
T Consensus 485 vtc~aFSP~sG~-lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 485 VTCMAFSPNSGY-LAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEEecCCCce-EEeecCCCceeeEeec
Confidence 999999999986 9999999999999874
No 111
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=206.73 Aligned_cols=320 Identities=18% Similarity=0.259 Sum_probs=220.7
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCC----CCEEEEec
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK----GNFMAVGS 216 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~la~g~ 216 (502)
.-++.|.|+...|.+..++. .|.||..+.-.. +.......| .+-.+.++-++|.+.-++. ...+.+++
T Consensus 327 ~IA~~Fdet~~klscVYndh---SlYvWDvrD~~kvgk~~s~lyH----S~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDH---SLYVWDVRDVNKVGKCSSMLYH----SACIWDVENLPCNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred eeEEEecCCCceEEEEEcCc---eEEEEeccccccccceeeeeec----cceeeeeccccccccCcccccCCccceeEec
Confidence 35788999999999998886 344444433221 111111222 1222444445544432221 23488999
Q ss_pred CCCcEEEeeCCCCC--CcCcceecCCcch--------hhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 217 MEPAIEIWDLDVID--EVQPHVILGGIDE--------EKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 217 ~dg~I~iwdl~~~~--~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
.|++||+|+++... .+....++..... .+.......+--.+-..........+.+|+.+|+ +.+||+|.
T Consensus 400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGD 478 (1080)
T KOG1408|consen 400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGD 478 (1080)
T ss_pred CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceecccC
Confidence 99999999997621 2211122211000 0000000000001111122344567999999999 56999999
Q ss_pred cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCC-CccceEeecCCe--------
Q 010748 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADV-------- 355 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v-------- 355 (502)
.-|+++||++........+..|...|.|+.|+.- +..+|++++.|+.|.+||+...- .....-.|...|
T Consensus 479 r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~ 558 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN 558 (1080)
T ss_pred ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeec
Confidence 9999999999999988999999999999999852 33789999999999999986322 122222333333
Q ss_pred -----------------------------------------eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 010748 356 -----------------------------------------ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ 394 (502)
Q Consensus 356 -----------------------------------------~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~ 394 (502)
..++..|..+ ++++++.|..|+||++.++
T Consensus 559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sg--------- 628 (1080)
T KOG1408|consen 559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESG--------- 628 (1080)
T ss_pred CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEecccc---------
Confidence 3444555433 7899999999999999987
Q ss_pred ccceEE---eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748 395 QSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 395 ~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d 471 (502)
+.+..+ +.|.+....+...|.| .+|+|.+.|+++.++|+.+++ ++....+|...|+.+.|.+|.++ |++.+.|
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCkH-lISvsgD 704 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCKH-LISVSGD 704 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccchh-heeecCC
Confidence 444444 4577888999999998 999999999999999999998 88899999999999999999997 7888999
Q ss_pred CcEEEEECCCCc
Q 010748 472 GKLEIWDTLSDA 483 (502)
Q Consensus 472 g~i~vwd~~~~~ 483 (502)
|.|.||.+....
T Consensus 705 gCIFvW~lp~~m 716 (1080)
T KOG1408|consen 705 GCIFVWKLPLTM 716 (1080)
T ss_pred ceEEEEECchhH
Confidence 999999996543
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=175.97 Aligned_cols=249 Identities=22% Similarity=0.342 Sum_probs=191.7
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
+|+|.|.+.|+|+...+++|--....-.+.. ++.. .+..........+.|.+.|+|.+|+|. +.+||
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~-----~hea-------~~~pp~v~~kr~khhkgsiyc~~ws~~-gelia 105 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRH-----AHEA-------AKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIA 105 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCccc-----cccc-------ccCCCeEEeeeccccCccEEEEEecCc-cCeEE
Confidence 3489999999999999999976543221110 0000 000111112233468999999999999 56999
Q ss_pred EEecCCcEEEEeCCCCee-----eEeeccCCCCeEEEEEcCC---CCcEEEEEe-CCCcEEEEecCCCCCccceEeecCC
Q 010748 284 SASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHH---SPQILLSGS-FDRSVVMKDARISTHSGFKWAVAAD 354 (502)
Q Consensus 284 sgs~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~ 354 (502)
+||.|.+|++.-++...+ -..|..|.+.|..++|-.+ ++.+|++++ .|..|++-|...++......+|.+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 999999999987764433 2356779999999999643 335676655 4778888899888887778889998
Q ss_pred eeEE-EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe--cc-----CCCeeEEEEcCCCCCEEEEEeCC
Q 010748 355 VESL-AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AH-----DKAVCTISYNPLVPNLLATGSTD 426 (502)
Q Consensus 355 v~~v-~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~h-----~~~v~~l~~sp~~~~~l~t~s~d 426 (502)
|.++ .|+ ...|++|+.|.+|++||+|-. .++..+. .| ...|.+++..|.| ++|++|..|
T Consensus 186 ilalyswn---~~m~~sgsqdktirfwdlrv~---------~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~d 252 (350)
T KOG0641|consen 186 ILALYSWN---GAMFASGSQDKTIRFWDLRVN---------SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHAD 252 (350)
T ss_pred EEEEEEec---CcEEEccCCCceEEEEeeecc---------ceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCC
Confidence 8877 465 348999999999999999976 3444432 12 3579999999998 999999999
Q ss_pred CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
....+||++.++ ++..+.+|...|.|+.|+|...| |.+++.|..|++-|+..
T Consensus 253 ssc~lydirg~r--~iq~f~phsadir~vrfsp~a~y-llt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 253 SSCMLYDIRGGR--MIQRFHPHSADIRCVRFSPGAHY-LLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CceEEEEeeCCc--eeeeeCCCccceeEEEeCCCceE-EEEecccceEEEeeccc
Confidence 999999999998 68889999999999999999886 88899999999999854
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.2e-24 Score=187.29 Aligned_cols=239 Identities=18% Similarity=0.249 Sum_probs=184.8
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|+|.++.|++++.||++++|++...... ....|..++++++|.+. ..+++
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------------~~~~~~~plL~c~F~d~--~~~~~ 70 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------------LKFKHGAPLLDCAFADE--STIVT 70 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchhhh----------------------------hheecCCceeeeeccCC--ceEEE
Confidence 4788899999999999999999754221 11258899999999986 47899
Q ss_pred EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 364 (502)
|+.||.|+++|+.++... .+..|..+|+||.+++.. ..+++|+.|++|++||.|...... .......|.++....
T Consensus 71 G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~g-- 145 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVSG-- 145 (323)
T ss_pred eccCceEEEEEecCCcce-eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccc-ccccCceEEEEeccC--
Confidence 999999999999988654 455699999999999877 789999999999999999744433 334455788887763
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc-eEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--eeE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSC 441 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--~~~ 441 (502)
+.|++|+.+..|.+||+|+... +. ..-..-.-.+.|+++.|++ .-+++++-||.|.+=.+.... ...
T Consensus 146 -~~LvVg~~~r~v~iyDLRn~~~--------~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 146 -NRLVVGTSDRKVLIYDLRNLDE--------PFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred -CEEEEeecCceEEEEEcccccc--------hhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhh
Confidence 4799999999999999998742 22 1122334568999999976 567788899998875554431 112
Q ss_pred EEEecCCC---------CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 442 IASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 442 ~~~~~~~~---------~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
.+.+..|. -+|++++|+|-.. .|||||.||.|.+||+.+.+.+.++.
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhcc
Confidence 34444442 3799999999977 59999999999999999988876543
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=3.6e-24 Score=216.93 Aligned_cols=250 Identities=21% Similarity=0.306 Sum_probs=201.3
Q ss_pred CCCCCEEEEec--CCCcEEEeeCCCCCC-cCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748 206 REKGNFMAVGS--MEPAIEIWDLDVIDE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 206 s~~~~~la~g~--~dg~I~iwdl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
+|+|..+|+|+ .||.++||+.+.... ... +.-...........|.+.|+|+.|+|+ +.+|
T Consensus 22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------------~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~l 84 (942)
T KOG0973|consen 22 HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------------KNENLPKHLCTMDDHDGSVNCVRFSPD-GSYL 84 (942)
T ss_pred cCCceeEecCCccccccceeeccccccchhhh----------------hhcccchhheeeccccCceeEEEECCC-CCeE
Confidence 89999999999 999999999864221 100 001123444566789999999999999 5699
Q ss_pred EEEecCCcEEEEeCCC------------------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748 283 ASASADKQVKIWDVAA------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 283 ~sgs~dg~v~vwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 344 (502)
|+||.|+.|.||.... .+++..+.+|...|..++|+|++ .+|++++.|++|.+|+.++...
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccccee
Confidence 9999999999998762 24678889999999999999988 9999999999999999999988
Q ss_pred ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc------CCCeeEEEEcCCCCC
Q 010748 345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPN 418 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~ 418 (502)
...+..|.+.|..+.|+|-|. +|++-+.|++|++|.+... .....+..+ ......+.|+|+| .
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG-~ 232 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDG-H 232 (942)
T ss_pred eeeeecccccccceEECCccC-eeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCc-C
Confidence 888889999999999999876 8999999999999997664 233333322 3457899999999 8
Q ss_pred EEEEEeC----CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC------C---------Cc-EEEEEeCCCcEEEEE
Q 010748 419 LLATGST----DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED------S---------PF-VLAIGGSKGKLEIWD 478 (502)
Q Consensus 419 ~l~t~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd------~---------~~-ll~sg~~dg~i~vwd 478 (502)
+|++... -.++.|.+-.+.+ .-..+-+|.+++.++.|+|. . .| ++|+|+.|++|.||.
T Consensus 233 ~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred eecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 8887643 2357888775554 56778899999999999983 1 22 789999999999999
Q ss_pred CCCCcccc
Q 010748 479 TLSDAGIS 486 (502)
Q Consensus 479 ~~~~~~~~ 486 (502)
....+++.
T Consensus 311 T~~~RPl~ 318 (942)
T KOG0973|consen 311 TALPRPLF 318 (942)
T ss_pred cCCCCchh
Confidence 97766654
No 115
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-23 Score=184.44 Aligned_cols=245 Identities=20% Similarity=0.311 Sum_probs=187.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe-ccCCCcEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~s 284 (502)
.+.|+.+|+|+.|++|.|||+..... ........+.|.+.|..+.| +|..+..+|+
T Consensus 22 D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 22 DFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHDGSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred cccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecCCcEEEEEecCccccceEEE
Confidence 56799999999999999999854322 23344455689999999999 5677889999
Q ss_pred EecCCcEEEEeCC---------CCeeeEeeccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCcc------c-
Q 010748 285 ASADKQVKIWDVA---------AGKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSG------F- 347 (502)
Q Consensus 285 gs~dg~v~vwd~~---------~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~------~- 347 (502)
||.|+++.||.=. ......++....+.|+.++|.|.. +-.|++++.||.+|||+.-...... .
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 9999999999752 112345666678899999999853 2678999999999999865432111 0
Q ss_pred ------eEeecCCeeEEEeCCC--CCCEEEEEeCC-----CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748 348 ------KWAVAADVESLAWDPH--AEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 348 ------~~~~~~~v~~v~~~~~--~~~~~~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
...+.....|+.|+|. ...+|++|+.+ +.++||........ ...+..+..|+.+|+.|+|.|
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeeecc
Confidence 1124566789999974 23468888766 47888877654210 245667789999999999999
Q ss_pred CCC---CEEEEEeCCCcEEEEECCCC------------------CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 010748 415 LVP---NLLATGSTDKMVKLWDLSNN------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 473 (502)
Q Consensus 415 ~~~---~~l~t~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~ 473 (502)
+-+ .+||+++.|| |+||.+... ....+..+..|.+.|+.+.|+-.|. +|++.|.||.
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~ 311 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGC 311 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCce
Confidence 743 4799999999 999998741 1234566789999999999999998 7999999999
Q ss_pred EEEEECC
Q 010748 474 LEIWDTL 480 (502)
Q Consensus 474 i~vwd~~ 480 (502)
|++|...
T Consensus 312 VRLWkan 318 (361)
T KOG2445|consen 312 VRLWKAN 318 (361)
T ss_pred eeehhhh
Confidence 9999763
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.7e-24 Score=195.70 Aligned_cols=240 Identities=17% Similarity=0.238 Sum_probs=193.7
Q ss_pred CCEEEEecC-CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 209 GNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 209 ~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+.|++++.. -+.|.+|.+...+.+.. ..--.++|.||+-+|. +++|+.|+.
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q---------------------------~~v~Pg~v~al~s~n~-G~~l~ag~i 101 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQ---------------------------YIVLPGPVHALASSNL-GYFLLAGTI 101 (476)
T ss_pred hhheeeecccCccccccccCchhhhhh---------------------------hcccccceeeeecCCC-ceEEEeecc
Confidence 567776654 47899999864332221 1124578999999999 678888889
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC---------CCCccceEeecCCeeEE
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---------STHSGFKWAVAADVESL 358 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~v 358 (502)
.|.|++|.+.+|..+..+.+|-..|+|+.|+-++ .+|+||+.||.|.+|.+.. .........|.-+|+.+
T Consensus 102 ~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 102 SGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred cCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE
Confidence 9999999999999999999999999999999999 8999999999999998642 22233344677789998
Q ss_pred EeCCCC-CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 359 AWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 359 ~~~~~~-~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
...+.+ ...+++++.|.++++||+..+ ..+.++. ....+.+++..|.. ..+++|+.+|.|.+.++...
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---------~LLlti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLG---------VLLLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccc---------eeeEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhcC
Confidence 887642 347999999999999999987 4444444 56789999999987 99999999999999887543
Q ss_pred C--------------eeEEEEecCCCC--cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 438 Q--------------PSCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 438 ~--------------~~~~~~~~~~~~--~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
. ...+..+.+|.+ .|+|++.+-||. +|++|+.||.|+|||+.+.+++++..
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence 2 123555677887 999999999999 79999999999999999999988766
No 117
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=193.74 Aligned_cols=219 Identities=24% Similarity=0.380 Sum_probs=181.6
Q ss_pred ccccccCcccceeeEEeccCC-CcEEEEEecCCcEEEEeCCC----------------CeeeEeeccCCCCeEEEEEcCC
Q 010748 258 IKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAA----------------GKCNLTLEHHTDKVQAVAWNHH 320 (502)
Q Consensus 258 ~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~vwd~~~----------------~~~~~~~~~h~~~v~~l~~~~~ 320 (502)
......+|.+.|+.+...+.+ ..+.|+-+..|.|+||++.. .+++.++.+|...-+.|+|+|-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 334445788888888877763 45777778899999999852 3567888999999999999996
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCC---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc
Q 010748 321 SPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS 397 (502)
Q Consensus 321 ~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 397 (502)
....|++|..-+.|++|...++.- ...+..|...|..++|+|....+|++|+-||+|+|||+|.+.. ++.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-------~~~ 295 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-------KAA 295 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------cce
Confidence 656799999999999999887542 2234568899999999999889999999999999999998743 444
Q ss_pred eEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 398 ~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v 476 (502)
....+|.+-|+.|.|+..- .+||+|+.||+++|||++..+. ..+..+..|..+|+++.|+|....+|+++|.|..|.|
T Consensus 296 ~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 4558999999999999987 4999999999999999987543 3577888999999999999987778999999999999
Q ss_pred EECCCCcc
Q 010748 477 WDTLSDAG 484 (502)
Q Consensus 477 wd~~~~~~ 484 (502)
||+....-
T Consensus 375 WDlsvE~D 382 (440)
T KOG0302|consen 375 WDLSVEAD 382 (440)
T ss_pred EEeeccCC
Confidence 99975443
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.2e-24 Score=189.90 Aligned_cols=246 Identities=22% Similarity=0.326 Sum_probs=206.1
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
....+.+++.|.+.+||.+.++.++. .+.||.+.|+++.|++. +.+++++|.
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL~---------------------------~Y~GH~GSVNsikfh~s-~~L~lTaSG 210 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACLA---------------------------TYTGHTGSVNSIKFHNS-GLLLLTASG 210 (481)
T ss_pred CCcceeecccccceeEEeecccccee---------------------------eecccccceeeEEeccc-cceEEEccC
Confidence 35588999999999999999876654 45599999999999998 679999999
Q ss_pred CCcEEEEeC------CC----------------------------------CeeeEeeccCCCCeEEEEEcCCCCcEEEE
Q 010748 288 DKQVKIWDV------AA----------------------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLS 327 (502)
Q Consensus 288 dg~v~vwd~------~~----------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 327 (502)
|++..||.. .. ..++..+.+|.+.|.+..|-..+ ..+++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vT 289 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVT 289 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeee
Confidence 999999962 10 02456778999999999999988 89999
Q ss_pred EeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748 328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
++.|++..+||+.++.....+.+|....+.++-+|.. .++++++.|.+.++||+|.. ...+..+++|+..|
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--------I~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--------IQSVAVFQGHTDTV 360 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh--------cceeeeecccccce
Confidence 9999999999999999999889999999999999964 58999999999999999976 47788999999999
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
+++.|..+ ..+++|+.|.+|+|||+++.+. .+.++. ...+++.++.+..++ +||.--.+..|++||+......+-
T Consensus 361 TS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs-plATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 361 TSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS-PLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred eEEEEecC--CceeecCCCceEEEeeeccccC-cceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCccccC
Confidence 99999985 5799999999999999998873 344443 346799999999888 688888888999999976655443
Q ss_pred cccCCCCCC
Q 010748 488 RFSKYSKPK 496 (502)
Q Consensus 488 ~~~~~~~~~ 496 (502)
.-..+.+++
T Consensus 436 PrtsRqgHr 444 (481)
T KOG0300|consen 436 PRTSRQGHR 444 (481)
T ss_pred Ccccccccc
Confidence 333444443
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=9.6e-24 Score=184.15 Aligned_cols=217 Identities=21% Similarity=0.327 Sum_probs=173.6
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.|+|+++|+.||.|.|||+......+.....- +.+....+....+|.-.|.++.|-|-...++.++|.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~------------k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIA------------KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhcccee------------heeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 59999999999999999997644322111110 111111222345899999999999987779999999
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 365 (502)
|.+++|||.++.+....|+ ..+.|.+-+|+|-.. .++++|..+-.|++.|+.++.....+.+|...|.++.|+|...
T Consensus 123 DhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred cceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce
Confidence 9999999999999888887 477899999988542 5788888899999999999999998999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCC------CCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748 366 HSFVVSLEDGTIKGFDIRTAKSD------PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 366 ~~~~~~~~dg~v~i~d~~~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
..+++|+.||.|++||+|..... .+....+.+..-.+|.+.|.+++|+.++ .++++++.|..+++|+..+++
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCc
Confidence 99999999999999999986321 1111122333456789999999999998 899999999999999987764
No 120
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=205.33 Aligned_cols=325 Identities=15% Similarity=0.234 Sum_probs=244.1
Q ss_pred CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748 128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 207 (502)
-+.+......|.+.|....|.|...+|++++.+. ++++|+++...+....|.. .....+.|+|+.+. ..
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn---Slk~~vfD~~dg~pR~LR~--R~GHs~Pp~~irfy------~~ 345 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN---SLKVWVFDSGDGVPRLLRS--RGGHSAPPSCIRFY------GS 345 (910)
T ss_pred CeeeeeeeccccCCcccceecCCCceEeeccCCC---ceeEEEeeCCCCcchheee--ccCCCCCchheeee------cc
Confidence 3444444556889999999999999999999886 8999999976653222221 12235667999886 45
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCccee-------------------------cCCcchhhhhh-------------c
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVI-------------------------LGGIDEEKKKK-------------K 249 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~-------------------------l~~~~~~~~~~-------------~ 249 (502)
+|.++.+++.|++.+.+++.....-+.... +.......+.+ .
T Consensus 346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY 425 (910)
T ss_pred CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence 799999999999999988743211111111 00000000000 0
Q ss_pred cccCCcccc-ccc-----ccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee---ccCCCCeEEEEEcCC
Q 010748 250 SKKGKKSSI-KYK-----KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHH 320 (502)
Q Consensus 250 ~~~~~~~~~-~~~-----~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~ 320 (502)
...-+++.. .+. ++.-...+++++.++. +++.+.|+..|+|-+|++++|-...+| ..|.++|++++....
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT 504 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence 000001111 111 1112367899999998 679999999999999999999988888 589999999999988
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE
Q 010748 321 SPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 400 (502)
Q Consensus 321 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 400 (502)
+ +.+++++.+|.+.+||........ .+.....+.++..+.... +++++..+-.|+++|+.+. +.++.+
T Consensus 505 n-~~~vsa~~~Gilkfw~f~~k~l~~-~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~---------kvvR~f 572 (910)
T KOG1539|consen 505 N-RLLVSAGADGILKFWDFKKKVLKK-SLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR---------KVVREF 572 (910)
T ss_pred C-ceEEEccCcceEEEEecCCcceee-eeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh---------hhhHHh
Confidence 8 899999999999999998876433 567788889998888654 7889999999999999986 788999
Q ss_pred eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-CcEEEEEC
Q 010748 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDT 479 (502)
Q Consensus 401 ~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-g~i~vwd~ 479 (502)
.+|...|+.++|||+| ++|++++.|++|++||+.++.. +-.+ .-..+++++.|+|+|.| |||...| ..|++|--
T Consensus 573 ~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~l--ID~~-~vd~~~~sls~SPngD~-LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 573 WGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTL--IDGL-LVDSPCTSLSFSPNGDF-LATVHVDQNGIYLWSN 647 (910)
T ss_pred hccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcce--eeeE-ecCCcceeeEECCCCCE-EEEEEecCceEEEEEc
Confidence 9999999999999998 9999999999999999999983 3332 23478999999999996 8888888 67999964
Q ss_pred CC
Q 010748 480 LS 481 (502)
Q Consensus 480 ~~ 481 (502)
.+
T Consensus 648 ks 649 (910)
T KOG1539|consen 648 KS 649 (910)
T ss_pred hh
Confidence 33
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.2e-24 Score=185.77 Aligned_cols=220 Identities=23% Similarity=0.388 Sum_probs=184.3
Q ss_pred cCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe------------eeE---eeccCCCCeEEEEEcCCCCcEEEE
Q 010748 263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK------------CNL---TLEHHTDKVQAVAWNHHSPQILLS 327 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~------------~~~---~~~~h~~~v~~l~~~~~~~~~l~s 327 (502)
..|.+.|++|...+.-+.++++|++||.|.|||+++.. |+. .-.+|.-.|.++.|-|-..-+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999878899999999999999997532 211 114688899999999988789999
Q ss_pred EeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC--CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC
Q 010748 328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 405 (502)
Q Consensus 328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~ 405 (502)
++.|.++++||..+.+... .+..++.|.+-+|+|-. ..++++|..+-.|++.|+.++ .....+.+|..
T Consensus 120 sSFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~ 189 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRD 189 (397)
T ss_pred ccccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccC
Confidence 9999999999999876544 66778889988998853 347888899999999999997 78899999999
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC-------------eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 010748 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg 472 (502)
.|.++.|+|.....|+||+.||.|++||++... +..+.....|.+.|+.++|+.++.+ +++.+.|.
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~ 268 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDD 268 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCcc
Confidence 999999999988899999999999999997531 1122335578899999999999997 88888999
Q ss_pred cEEEEECCCCccccccccCCC
Q 010748 473 KLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~ 493 (502)
.+++|+..+|....+.++...
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~ 289 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPII 289 (397)
T ss_pred ceEEeecccCccccccccccc
Confidence 999999999987766665543
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=3.2e-22 Score=191.34 Aligned_cols=278 Identities=13% Similarity=0.105 Sum_probs=185.6
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCCCCC
Q 010748 152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID 230 (502)
Q Consensus 152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~~~~ 230 (502)
+++++++.++ .|++|+.........+.++ .-+.++.| +|+++.+ ++++.++.|++||+.++.
T Consensus 2 ~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~-----~~~~~l~~-------~~dg~~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKDN-----TISVIDTATLEVTRTFPVG-----QRPRGITL-------SKDGKLLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCCC-----EEEEEECCCCceEEEEECC-----CCCCceEE-------CCCCCEEEEEECCCCeEEEEECCCCc
Confidence 4667777666 4444554333111111211 12345555 7888876 567788999999987543
Q ss_pred CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCC
Q 010748 231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD 310 (502)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~ 310 (502)
... .+..+ ..+..++|+|++..++++++.++.|++||+.+++.+..+.. ..
T Consensus 65 ~~~---------------------------~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~ 115 (300)
T TIGR03866 65 VIG---------------------------TLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GV 115 (300)
T ss_pred EEE---------------------------eccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CC
Confidence 211 11122 22467899999654555667789999999999888877763 34
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 010748 311 KVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~ 389 (502)
.+.+++|+|++ .++++++.++ .+.+||.++..... .......+.+++|+|++..+++++..++.|++||+.+.
T Consensus 116 ~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---- 189 (300)
T TIGR03866 116 EPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVD-NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---- 189 (300)
T ss_pred CcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEE-EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc----
Confidence 56889999999 7787777765 56778987765433 22334556789999987754455567999999999876
Q ss_pred CCCCCccceEEecc-----C--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC
Q 010748 390 DSTSQQSSFTLHAH-----D--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 390 ~~~~~~~~~~~~~h-----~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
..+..+..+ . .....++|+|++..++++.+.++.|.+||+.+++... .. .+...+.+++|+|++.
T Consensus 190 -----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--~~-~~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 190 -----KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--YL-LVGQRVWQLAFTPDEK 261 (300)
T ss_pred -----eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--EE-EeCCCcceEEECCCCC
Confidence 333332211 1 1235688999984444555667789999998876432 22 2335789999999999
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccc
Q 010748 463 FVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 463 ~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
+++++++.+|.|+|||+.+++.+.+..
T Consensus 262 ~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 644445678999999999999877664
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=9.9e-23 Score=200.40 Aligned_cols=296 Identities=17% Similarity=0.270 Sum_probs=220.3
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEec
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~la~g~ 216 (502)
+...|+++.-+|--..+|+|..+| +|.+++...+.. .+...|+ -+..+.+.+ ..||+ .||+|+
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G-----~ViifNlK~dki-l~sFk~d---~g~VtslSF-------rtDG~p~las~~ 264 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENG-----TVIIFNLKFDKI-LMSFKQD---WGRVTSLSF-------RTDGNPLLASGR 264 (910)
T ss_pred cccceeEeccCCcceEEEEeccCc-----eEEEEEcccCcE-EEEEEcc---ccceeEEEe-------ccCCCeeEEecc
Confidence 457899999999999999999998 666666655521 1112232 122234433 55665 567777
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
..|.+.+||++.. +........|.+.|..+.|.|. ..+|++++.|+.+++|=.
T Consensus 265 ~~G~m~~wDLe~k--------------------------kl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 265 SNGDMAFWDLEKK--------------------------KLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVF 317 (910)
T ss_pred CCceEEEEEcCCC--------------------------eeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEe
Confidence 8899999999731 2222334479999999999998 779999999999999865
Q ss_pred CCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC--------------------------------
Q 010748 297 AAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-------------------------------- 340 (502)
Q Consensus 297 ~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~-------------------------------- 340 (502)
.++ +.++.-.+|+.+..|+.|.-....++++++.|++++.+++.
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 543 45666689999999999985555889999998877776643
Q ss_pred ---------------------------------CCCCccceEeec------CCeeEEEeCCCCCCEEEEEeCCCcEEEEE
Q 010748 341 ---------------------------------ISTHSGFKWAVA------ADVESLAWDPHAEHSFVVSLEDGTIKGFD 381 (502)
Q Consensus 341 ---------------------------------~~~~~~~~~~~~------~~v~~v~~~~~~~~~~~~~~~dg~v~i~d 381 (502)
....-.....+. ..+++++.++-| ++.+.|+..|.|-+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEE
Confidence 111101111111 346778888755 5899999999999999
Q ss_pred CCCCCCCCCCCCCccceEE---eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------------------
Q 010748 382 IRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------------- 439 (502)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~------------------- 439 (502)
++++ ....++ .+|.++|++++....+ +.+++++.+|.+++||+....+
T Consensus 477 mQSG---------i~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 477 MQSG---------IHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred cccC---------eeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 9987 333344 6899999999999876 8999999999999999976531
Q ss_pred --------------------eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 440 --------------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 440 --------------------~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
..+..+.+|.+.|+.++|||||+| |++++.|++|++||+.++.++-..
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCcceeeeE
Confidence 023344579999999999999997 888999999999999999987544
No 124
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.7e-24 Score=202.12 Aligned_cols=282 Identities=18% Similarity=0.322 Sum_probs=217.4
Q ss_pred ccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCC----eeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748 144 DMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPN----LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 144 ~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d 218 (502)
+++.+ |.+++|.+|+.++ .|++|........... -..||..-+..+.+| .+++.|++++.|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg---~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~-----------~~~~tlIS~SsD 94 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDG---IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC-----------GNGKTLISASSD 94 (735)
T ss_pred hccccCCCCceEEecCCCc---eEEEeccccccCCcccchhhhhhhhHhHHhhHHhh-----------cCCCceEEecCC
Confidence 45555 5677899999887 6788877655442111 112332222222222 468899999999
Q ss_pred CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEe-ccCCCcEEEEEecCCcEEEEeCC
Q 010748 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
-+|++|+..... ......+..|.+-|.||+. -++ ..++|||+-|+.|.|||++
T Consensus 95 tTVK~W~~~~~~-------------------------~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 95 TTVKVWNAHKDN-------------------------TFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDIN 148 (735)
T ss_pred ceEEEeecccCc-------------------------chhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEcc
Confidence 999999987532 1223345579999999999 555 6799999999999999999
Q ss_pred CC--eeeE--------eec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748 298 AG--KCNL--------TLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 298 ~~--~~~~--------~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 366 (502)
++ +.+. .+. ++...|++++.++.+ ..|++|+..+.+++||.++.+.+..+.+|...|.++..+++|.
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt- 226 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT- 226 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC-
Confidence 77 2222 233 788899999999999 8999999999999999999998888889999999999999876
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEe
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASR 445 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~ 445 (502)
.+++++.||+|++||+... .++.++..|...|+++..+|.- ..+++|+.||.|..=|+++... ..+..
T Consensus 227 ~~ls~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick- 295 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICK- 295 (735)
T ss_pred eEeecCCCceEEeeecccc---------ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeec-
Confidence 7999999999999999986 8899999999999999999987 8999999999999999998542 22222
Q ss_pred cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 446 ~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
...+|..+..+..... +-+++.|+.|+-|...-
T Consensus 296 --~daPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 296 --EDAPVLKLHLHEHDNS-VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred --CCCchhhhhhccccCC-ceeeeccccceecCCcc
Confidence 2356767777643332 34567888898887654
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=184.29 Aligned_cols=247 Identities=17% Similarity=0.261 Sum_probs=190.0
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
++.|.+||+|+.+|.|.|||+.+ ..+...+.+|..+|++|+|+++| .+|+|+
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T---------------------------~~iar~lsaH~~pi~sl~WS~dg-r~Llts 83 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDT---------------------------FRIARMLSAHVRPITSLCWSRDG-RKLLTS 83 (405)
T ss_pred ccCcceeeeeccCCcEEEEEccc---------------------------cchhhhhhccccceeEEEecCCC-CEeeee
Confidence 78899999999999999999986 23444667899999999999995 599999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee----cCCeeEEEeC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV----AADVESLAWD 361 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~ 361 (502)
|.|..|++||+..|.+++.+. ..++|+.+.|+|...+.+++.-.+..-.+-++..+......... .....+..|+
T Consensus 84 S~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred cCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc
Confidence 999999999999999999987 68899999999988777777766666666666653332211111 1123344688
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC---
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--- 437 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~--- 437 (502)
+.|. ++++|+..|.+.+++..+. .++..+.... ..|..+.++..| .+|++-+.|..||.|+++.-
T Consensus 163 r~g~-yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 163 RRGK-YIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred CCCC-EEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhccc
Confidence 8765 8999999999999999987 5666665555 788999999988 99999999999999998631
Q ss_pred ----CeeEEEEec--CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748 438 ----QPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 438 ----~~~~~~~~~--~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
.+.....+. -....-.+++|+.+|.|++|+...-..++||.-..|.+++-+.+..
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 111111111 1123346889999999877766666789999999999887665554
No 126
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=1.4e-22 Score=176.71 Aligned_cols=300 Identities=22% Similarity=0.329 Sum_probs=218.4
Q ss_pred cccccccc--CC-CceEEEEEecCC-cceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 141 DLEDMTIN--PN-DAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 141 ~v~~~~~~--p~-~~~l~~~~~~~~-~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
.+.++.|+ |+ .-.||.|+...+ ...++|..++.... .+........+-.++.+.|++-..+.. ..+||+.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~---e~~~~a~fd~~YP~tK~~wiPd~~g~~--pdlLATs~ 120 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG---ELVEDANFDHPYPVTKLMWIPDSKGVY--PDLLATSS 120 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC---ceeccCCCCCCCCccceEecCCccccC--cchhhccc
Confidence 34566666 33 446777775443 23566666665544 444333345566678888875432222 35677765
Q ss_pred CCCcEEEeeCCCCC-CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 217 MEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 217 ~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
..+|+|.+...+ .+.+...|.. ..-..+..++++..|+.-..++|.++|-|-+..|||
T Consensus 121 --D~LRlWri~~ee~~~~~~~~L~~-------------------~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWd 179 (364)
T KOG0290|consen 121 --DFLRLWRIGDEESRVELQSVLNN-------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWD 179 (364)
T ss_pred --CeEEEEeccCcCCceehhhhhcc-------------------CcccccCCcccccccccCCcceeEeecccCeEEEEE
Confidence 689999987422 2222222211 012246789999999998889999999999999999
Q ss_pred CCCCe---eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee---cCCeeEEEeCCCCCCEEE
Q 010748 296 VAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFV 369 (502)
Q Consensus 296 ~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~ 369 (502)
++++. ....+-.|...|..++|...+.++|++.+.||.||+||+|........... ..+...++|++...++++
T Consensus 180 ie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymA 259 (364)
T KOG0290|consen 180 IETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMA 259 (364)
T ss_pred EeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHh
Confidence 99873 356677899999999999988899999999999999999988776655533 457889999999888888
Q ss_pred EEeC-CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----eEEEE
Q 010748 370 VSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----SCIAS 444 (502)
Q Consensus 370 ~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----~~~~~ 444 (502)
+-.. ...|.+.|+|.. ..++..+..|.+.|++++|.|..+..|+|++.|.++.+||+...-. ..+..
T Consensus 260 Tf~~dS~~V~iLDiR~P--------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 260 TFAMDSNKVVILDIRVP--------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hhhcCCceEEEEEecCC--------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 7554 457999999998 5889999999999999999999989999999999999999976421 11222
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v 476 (502)
.. ..+.|..+.|++..+-.|+.+..+ ++.+
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 22 357799999997665557765543 4444
No 127
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=4.3e-23 Score=190.25 Aligned_cols=267 Identities=17% Similarity=0.241 Sum_probs=204.1
Q ss_pred CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccccee
Q 010748 191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 270 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 270 (502)
...+|++|+++ .+-+++|+|...|.|-+||+.+.+.. ......+..|..+|.
T Consensus 187 ~Rit~l~fHPt-----~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------------~d~v~~f~~hs~~Vs 238 (498)
T KOG4328|consen 187 RRITSLAFHPT-----ENRKLVAVGDKGGQVGLWNFGTQEKD-----------------------KDGVYLFTPHSGPVS 238 (498)
T ss_pred cceEEEEeccc-----CcceEEEEccCCCcEEEEecCCCCCc-----------------------cCceEEeccCCcccc
Confidence 33478888543 23579999999999999999633222 233445668999999
Q ss_pred eEEeccCCCcEEEEEecCCcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc-
Q 010748 271 GLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF- 347 (502)
Q Consensus 271 ~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 347 (502)
+|.|+|.....+++.|.||+|++-|++.+.. +.++......+.++.|+... ..++.+..=|...+||+|+......
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYEN 317 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchh
Confidence 9999999888999999999999999987643 33333355677888998888 5566666667999999999876433
Q ss_pred eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
..-|...|.+++++|..+.++++++.|++++|||+|...... .++.....|...|.+..|||.+.. |+|.+.|.
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~ 391 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDN 391 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEeeccCC
Confidence 335667999999999999999999999999999999874311 145666789999999999999845 99999999
Q ss_pred cEEEEECC----CCCeeEEEEecCCC---CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748 428 MVKLWDLS----NNQPSCIASRNPKA---GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 428 ~i~vwd~~----~~~~~~~~~~~~~~---~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
.|+|||.. .-.+.+........ -......|.|+.. ++++|..-..|-|+|-..++.+..+.....
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence 99999984 23333333322211 1356789999988 689999999999999998887776554443
No 128
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.5e-23 Score=192.32 Aligned_cols=282 Identities=20% Similarity=0.267 Sum_probs=206.2
Q ss_pred eEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec--CCCcEEEeeCCCCC
Q 010748 153 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--MEPAIEIWDLDVID 230 (502)
Q Consensus 153 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~--~dg~I~iwdl~~~~ 230 (502)
+.++.+.+ .+++|.+..... ..-|.||..... ...+.| +. .++|++++ .|..|++|.-+...
T Consensus 5 l~~aS~gd----~~kl~D~s~~~~--~~~~~~~t~~pg--~~s~~w-------~~-~n~lvvas~~gdk~~~~~~K~g~~ 68 (673)
T KOG4378|consen 5 LHVASTGD----KTKLSDFSDLET--KSEYVHQTAEPG--DFSFNW-------QR-RNFLVVASMAGDKVMRIKEKDGKT 68 (673)
T ss_pred eeeeccCC----ceEEeecccccC--ccccccCCCCCc--ceeeec-------cc-cceEEEeecCCceeEEEecccCCC
Confidence 44444434 368887776543 244566654432 356667 23 34455554 56789999755321
Q ss_pred CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCC
Q 010748 231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD 310 (502)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~ 310 (502)
.....+ ....+ +.-.|++.... ..++++|+..++|+|||++...+.+.++.|.+
T Consensus 69 --~~Vp~~---------------------~k~~g--d~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s 122 (673)
T KOG4378|consen 69 --PEVPRV---------------------RKLTG--DNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQS 122 (673)
T ss_pred --Ccccee---------------------ecccc--chHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcc
Confidence 111111 11112 23344444444 35899999999999999998888888899999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 010748 311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~ 389 (502)
.|+++.++... .+|++++..|-|.|..+.++.....+... ...|.-+.|+|....++.+++.+|.|.+||+...
T Consensus 123 tvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~---- 197 (673)
T KOG4378|consen 123 TVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM---- 197 (673)
T ss_pred eeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC----
Confidence 99999999988 89999999999999999987765533333 3446689999998888899999999999999876
Q ss_pred CCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748 390 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 390 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~ 469 (502)
.........|..+...|+|+|..+.+|++.+.|+.|.+||.+..+...... ...+..+++|.++|.+ |++|+
T Consensus 198 ----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~-L~aG~ 269 (673)
T KOG4378|consen 198 ----SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTY-LCAGN 269 (673)
T ss_pred ----CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceE-EEeec
Confidence 233444568999999999999998999999999999999999766322222 3467899999999985 89999
Q ss_pred CCCcEEEEECCCCccccccc
Q 010748 470 SKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 470 ~dg~i~vwd~~~~~~~~~~~ 489 (502)
..|.|..||++..+......
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVR 289 (673)
T ss_pred CCceEEEEecccCCCCceEe
Confidence 99999999998876544433
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.7e-24 Score=191.02 Aligned_cols=245 Identities=17% Similarity=0.215 Sum_probs=195.6
Q ss_pred CeeeeeccccCCCcceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccc
Q 010748 180 NLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSI 258 (502)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 258 (502)
.|..|.+.+ .|++- +|. -..+|+|+.||.|+|||+..- ..
T Consensus 61 ~L~gHrdGV-----~~lak-------hp~~ls~~aSGs~DG~VkiWnlsqR---------------------------~~ 101 (433)
T KOG0268|consen 61 SLDGHRDGV-----SCLAK-------HPNKLSTVASGSCDGEVKIWNLSQR---------------------------EC 101 (433)
T ss_pred hcccccccc-----chhhc-------CcchhhhhhccccCceEEEEehhhh---------------------------hh
Confidence 445566555 45544 454 378999999999999999753 33
Q ss_pred cccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748 259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd 338 (502)
...+..|.+.|..|++... .+++++.|.+|+.|-+.. .+++++-+ ...++.+.-+..+ ..++|++. .|.|||
T Consensus 102 ~~~f~AH~G~V~Gi~v~~~---~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQT---SFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWD 173 (433)
T ss_pred hheeecccCceeeEEeccc---ceEEecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecc
Confidence 4456789999999999873 688999999999999765 47777754 5567788777777 78888875 599999
Q ss_pred cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
.+...++..+.-....|.++.|+|....+|+++.+|+.|.+||+|+. .++..+.. ...-+.|+|+|.+ .
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~---------~Pl~KVi~-~mRTN~IswnPea-f 242 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA---------SPLKKVIL-TMRTNTICWNPEA-F 242 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC---------Cccceeee-eccccceecCccc-c
Confidence 98777766554455679999999988888888889999999999997 44444432 3345789999965 7
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
.+++|+.|..++.||++.... .+..+.+|...|..+.|+|.|+- +++||.|.+|+||.+..+..
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~-p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSR-PLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ceeeccccccceehhhhhhcc-cchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcc
Confidence 888999999999999998763 56778899999999999999995 99999999999999976653
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.4e-25 Score=212.06 Aligned_cols=222 Identities=25% Similarity=0.419 Sum_probs=195.6
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
..++.+++|+.+-.+-+|.+...... ..+.+|..+|.+|.|++. ..+|++|+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i---------------------------~S~~~hespIeSl~f~~~-E~Llaags 89 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAI---------------------------TSLTGHESPIESLTFDTS-ERLLAAGS 89 (825)
T ss_pred ccceeeccCCCceeeccccccCCchh---------------------------heeeccCCcceeeecCcc-hhhhcccc
Confidence 45789999999999999988643222 135689999999999998 66999999
Q ss_pred cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 366 (502)
.+|+|++||+...+.++++.+|...+.++.|+|.+ .++++|+.|+.+++||++...+...+..|...+.++.|+|+|.
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr- 167 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR- 167 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc-
Confidence 99999999999999999999999999999999999 8889999999999999998888877777888899999999876
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
+++.|++|..+++||++.+ +....+..|.+.+.++.|+|.. .++++|+.|++|++||+++.. .+....
T Consensus 168 ~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe--~I~s~~ 235 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE--VISSGK 235 (825)
T ss_pred eeeccCCcceeeeeccccc---------ccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE--EeeccC
Confidence 8999999999999999987 7788889999999999999986 899999999999999999776 455556
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748 447 PKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~ll~sg~~d 471 (502)
.....|.+.+|+|++. .+++|...
T Consensus 236 ~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred CccCCceeeeecCCce-eeecCchh
Confidence 6678899999999998 46665544
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.3e-25 Score=211.69 Aligned_cols=211 Identities=23% Similarity=0.346 Sum_probs=191.9
Q ss_pred cCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748 263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~ 342 (502)
..|...|.|+..-.. ...+++|+.|..+-+|.+....++..|.+|..+|.||.|++.. .+|++|+.+|+|++||+...
T Consensus 25 ~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhh
Confidence 368899999988544 5689999999999999998888888899999999999999998 89999999999999999998
Q ss_pred CCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748 343 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 343 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t 422 (502)
+....+.+|...+.++.|+|.+. +++.|+.|+.+.+||.+.. .+.+.+.+|...|.++.|+|+| .+++.
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~---------Gc~~~~~s~~~vv~~l~lsP~G-r~v~~ 171 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKK---------GCSHTYKSHTRVVDVLRLSPDG-RWVAS 171 (825)
T ss_pred hhhhhhhccccCcceeeeccceE-Eeccccccccceehhhhcc---------CceeeecCCcceeEEEeecCCC-ceeec
Confidence 88888889999999999999876 7789999999999999976 6888899999999999999998 99999
Q ss_pred EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
|+.|..++|||+..++ .+..+..|.+.+.++.|+|..- ++++||.|+++++||+++...+.+.-
T Consensus 172 g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 172 GGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred cCCcceeeeecccccc--cccccccccccccccccCchhh-hhccCCCCceeeeeccceeEEeeccC
Confidence 9999999999999988 6778899999999999999875 89999999999999999877765443
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=194.94 Aligned_cols=306 Identities=16% Similarity=0.192 Sum_probs=223.4
Q ss_pred ccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CCeeeee-----------------ccccCCCcceeeeecCCCCCC
Q 010748 145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHH-----------------HIIIPAFPLCMAWLDCPLKDR 206 (502)
Q Consensus 145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~s 206 (502)
-+|.-+.++|++|+.++ -|..|+.....- ..|..-| .....-||-|++. .|+
T Consensus 264 nCIcVs~r~I~cgCa~g-----~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~-----~Fd 333 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKG-----MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIAC-----QFD 333 (1080)
T ss_pred ceeeeecceEEEeeccc-----eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEE-----Eec
Confidence 34455788999999998 444444332200 0000001 0111234555543 357
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC--------
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-------- 278 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-------- 278 (502)
+....|.+...|..|+|||+.....+ .....+..|...|+++.--|-.
T Consensus 334 et~~klscVYndhSlYvWDvrD~~kv------------------------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~ac 389 (1080)
T KOG1408|consen 334 ETTDKLSCVYNDHSLYVWDVRDVNKV------------------------GKCSSMLYHSACIWDVENLPCNVHSPTAAC 389 (1080)
T ss_pred CCCceEEEEEcCceEEEEeccccccc------------------------cceeeeeeccceeeeeccccccccCccccc
Confidence 78889999999999999999754322 2233445688888888766511
Q ss_pred --CcEEEEEecCCcEEEEeCCCCe---eeE----------------------------------eeccCCCCeEEEEEcC
Q 010748 279 --RNILASASADKQVKIWDVAAGK---CNL----------------------------------TLEHHTDKVQAVAWNH 319 (502)
Q Consensus 279 --~~~l~sgs~dg~v~vwd~~~~~---~~~----------------------------------~~~~h~~~v~~l~~~~ 319 (502)
+..+.+||.|++|++|++..+. ..+ ..-...-.+.+++.+|
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP 469 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence 2368999999999999987521 100 0001234689999999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC--CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccc
Q 010748 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS 397 (502)
Q Consensus 320 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 397 (502)
++ +.|++|..-|.+++|++...........|...|.|+.|+.- +..++++++.|..|++||+... ..++
T Consensus 470 ~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--------y~l~ 540 (1080)
T KOG1408|consen 470 DG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--------YDLV 540 (1080)
T ss_pred Cc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------cchh
Confidence 99 99999999999999999998888888899999999999752 3457899999999999999876 3566
Q ss_pred eEEeccCCCeeEEEEcCCC------------------------------------------------CCEEEEEeCCCcE
Q 010748 398 FTLHAHDKAVCTISYNPLV------------------------------------------------PNLLATGSTDKMV 429 (502)
Q Consensus 398 ~~~~~h~~~v~~l~~sp~~------------------------------------------------~~~l~t~s~dg~i 429 (502)
.++.+|...|+++.|..+| ..++++++.|..|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 6677777777766653322 1689999999999
Q ss_pred EEEECCCCCeeEEEE-ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 430 KLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+||++.+++....+. -..|.|....+...|.|-| ||+...|.++.++|+.+++++.+.++|..-
T Consensus 621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred EEEeccccceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 999999988433222 2356788999999999997 899999999999999999999999998654
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=199.06 Aligned_cols=276 Identities=17% Similarity=0.249 Sum_probs=209.0
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
|...-..++|.|+|++|++++.+++ +++|.-.... ..|.....+ ....+++ ...+++|++|+.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~---ir~~~~~sd~-e~P~ti~~~----g~~v~~i---------a~~s~~f~~~s~ 74 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGD---IRKWKTNSDE-EEPETIDIS----GELVSSI---------ACYSNHFLTGSE 74 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCc---eEEeecCCcc-cCCchhhcc----CceeEEE---------eecccceEEeec
Confidence 6677889999999999999999983 3555444332 122222211 1111333 236779999999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
+++|.+|.+..++.-. .+...+-++++++|+.+ +.++|.||.|-.|++-++.
T Consensus 75 ~~tv~~y~fps~~~~~---------------------------iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDT---------------------------ILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred cceEEEeeCCCCCccc---------------------------eeeeeeccceEEEEecC-CcEEEeecCceeEEEEecc
Confidence 9999999997654321 22245678999999998 6799999999999999999
Q ss_pred CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--------ecCCeeEEEeCCCCCCEEE
Q 010748 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFV 369 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~~~ 369 (502)
.......+++|.++|.+|.|+|.+ .+|++.+.||.|++|++..+........ ....+..++|+|++. .++
T Consensus 127 D~s~~~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la 204 (933)
T KOG1274|consen 127 DSSQEKVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLA 204 (933)
T ss_pred ccchheeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEE
Confidence 999999999999999999999999 9999999999999999998765443221 134577889999977 577
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCccceEE--eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010748 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 447 (502)
Q Consensus 370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~ 447 (502)
+...++.|.+|+.... ...+.+ ..+...++.+.|+|+| .+||+++.+|.|.|||..+.. ...
T Consensus 205 ~~~~d~~Vkvy~r~~w---------e~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~------~~~ 268 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGW---------ELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE------RHE 268 (933)
T ss_pred eeccCCeEEEEccCCc---------eeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch------hcc
Confidence 7778999999998886 334443 3345559999999998 999999999999999998733 122
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vw 477 (502)
....|.+++|.|+..- +..-...|...+|
T Consensus 269 ~~~~Vc~~aw~p~~n~-it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNANA-ITLITALGTLGVS 297 (933)
T ss_pred ccceeEEEecCCCCCe-eEEEeeccccccC
Confidence 3467999999999873 5544455554444
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.4e-21 Score=182.17 Aligned_cols=282 Identities=21% Similarity=0.340 Sum_probs=210.8
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
.+.|....|+|.+.-|.+.+..+ ++..|.+..... +...++..++ ..+.+|+++ .++|. +++|..
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~---H~~Fw~~~~~~l~k~~~~fek~e---kk~Vl~v~F-------~engd-viTgDS 265 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKG---HLYFWTLRGGSLVKRQGIFEKRE---KKFVLCVTF-------LENGD-VITGDS 265 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCc---eEEEEEccCCceEEEeecccccc---ceEEEEEEE-------cCCCC-EEeecC
Confidence 45678999999988877777665 455554332221 0111222222 266788887 45564 789999
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
+|.|.||+..+.. .......|.+.|.+|+...+ + .|+||+.|..|..||-.
T Consensus 266 ~G~i~Iw~~~~~~---------------------------~~k~~~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd~~ 316 (626)
T KOG2106|consen 266 GGNILIWSKGTNR---------------------------ISKQVHAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWDDN 316 (626)
T ss_pred CceEEEEeCCCce---------------------------EEeEeeecCCceEEEEEecC-c-cEeecCccceEEecccc
Confidence 9999999975421 11122279999999999998 4 57779999999999832
Q ss_pred CCe----------------------------------------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748 298 AGK----------------------------------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 298 ~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw 337 (502)
-.+ ......+|......++.+|.. .++++++.|+.+++|
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLW 395 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEc
Confidence 000 011234688889999999998 889999999999999
Q ss_pred ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748 338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 338 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
+ ............++.|+.|+|.+ .+++|+..|...+.|..+. .+.+++....++++++|+|+|
T Consensus 396 ~---~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~----------~lv~~~~d~~~ls~v~ysp~G- 459 (626)
T KOG2106|consen 396 N---DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ----------DLVTIHTDNEQLSVVRYSPDG- 459 (626)
T ss_pred c---CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccc----------eeEEEEecCCceEEEEEcCCC-
Confidence 9 33344455678899999999976 7999999999999999874 344455458999999999998
Q ss_pred CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
.+||.|+.|+.|+||-+..+..........+..+|+.+.|++|++| |.+-+.|-.|..|....
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSGDYEILYWKPSE 522 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccCceEEEEEcccc
Confidence 9999999999999999987664444444445589999999999997 88888888999994433
No 135
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1e-22 Score=196.55 Aligned_cols=225 Identities=18% Similarity=0.250 Sum_probs=190.1
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee-EEeccCCCcEEEEEe
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs 286 (502)
++-.+++++.||++++|+-.. +.....+.+.+|.+-|.+ +++-+..+-.|++|+
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~-------------------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKG-------------------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGG 78 (745)
T ss_pred CCeEEeecCCCCceeeeeccC-------------------------cccccceecccCcceeeccceeccccCcceEeec
Confidence 466899999999999998532 222233445567777777 888764345799999
Q ss_pred cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 366 (502)
.|++|.+|.+.+..++.++++|...|+|+....++ . +++||.|.++++|-..... ....+|...|.++..-|.+
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~--~~l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV--YSLQGHTASVWAVASLPEN-- 152 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhhh--cccCCcchheeeeeecCCC--
Confidence 99999999999999999999999999999988877 3 9999999999999876433 3367899999999999865
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.+++|+.|.+|++|.-. ..+.++.+|+..|.++++-+. ..+++|+.||.|++|++ ++. ++....
T Consensus 153 ~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~-~ge--~l~~~~ 216 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDL-DGE--VLLEMH 216 (745)
T ss_pred cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecC--CCeEeecCCceEEEEec-cCc--eeeeee
Confidence 79999999999999864 668889999999999999985 46899999999999999 454 688899
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
+|...|+++...+++. +++++|.|++++||+..
T Consensus 217 ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 9999999999766666 69999999999999976
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.8e-22 Score=170.67 Aligned_cols=256 Identities=19% Similarity=0.271 Sum_probs=193.8
Q ss_pred CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCCeeeeeccccCCCcceeeeecCCCCCCC-CCCE
Q 010748 135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNF 211 (502)
Q Consensus 135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~ 211 (502)
+..|++.|.+++..--|..||++++++ .++|+....... ....| ..|. +....+.|. +| -|++
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~---tVkIf~v~~n~~s~ll~~L-~Gh~----GPVwqv~wa------hPk~G~i 72 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDG---TVKIFEVRNNGQSKLLAEL-TGHS----GPVWKVAWA------HPKFGTI 72 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCc---cEEEEEEcCCCCceeeeEe-cCCC----CCeeEEeec------ccccCcE
Confidence 456889999999999999999999998 556665554432 11122 2333 333788886 44 4999
Q ss_pred EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCCc
Q 010748 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQ 290 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~ 290 (502)
||++++||.|.||.-..++ .........|...|++++|.|.. +.+||+++.||.
T Consensus 73 LAScsYDgkVIiWke~~g~-------------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~ 127 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGR-------------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK 127 (299)
T ss_pred eeEeecCceEEEEecCCCc-------------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCCc
Confidence 9999999999999976531 33344566899999999999863 458999999999
Q ss_pred EEEEeCCCC---eeeEeeccCCCCeEEEEEcCC---C----------CcEEEEEeCCCcEEEEecCCCCC--ccceEeec
Q 010748 291 VKIWDVAAG---KCNLTLEHHTDKVQAVAWNHH---S----------PQILLSGSFDRSVVMKDARISTH--SGFKWAVA 352 (502)
Q Consensus 291 v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~---~----------~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~ 352 (502)
|.|.+.+.. ...+....|.-.|++++|.|. | ...|++|+.|..|+||+.....- -..+..|.
T Consensus 128 vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~ 207 (299)
T KOG1332|consen 128 VSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK 207 (299)
T ss_pred EEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc
Confidence 999988754 223345789999999999986 2 14699999999999999987532 22356789
Q ss_pred CCeeEEEeCCCC---CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748 353 ADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 353 ~~v~~v~~~~~~---~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
..|+.++|.|.- ..++++++.||+|.||-.+..... -....+......+.+++|++.| ++|+.++.|+.|
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkv 280 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKV 280 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCcceEEEEEeccc-cEEEEecCCcEE
Confidence 999999999963 347999999999999998843211 1122233356789999999998 999999999999
Q ss_pred EEEECCC
Q 010748 430 KLWDLSN 436 (502)
Q Consensus 430 ~vwd~~~ 436 (502)
.+|--..
T Consensus 281 tlwke~~ 287 (299)
T KOG1332|consen 281 TLWKENV 287 (299)
T ss_pred EEEEeCC
Confidence 9996543
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=6e-22 Score=184.21 Aligned_cols=268 Identities=17% Similarity=0.212 Sum_probs=206.8
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010748 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 220 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~ 220 (502)
.+.++.|..... |++++..++ ..+.+|.-+.... .+........ .-..|+... ....|+++|+..+.
T Consensus 36 g~~s~~w~~~n~-lvvas~~gd-k~~~~~~K~g~~~---~Vp~~~k~~g-d~~~Cv~~~-------s~S~y~~sgG~~~~ 102 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGD-KVMRIKEKDGKTP---EVPRVRKLTG-DNAFCVACA-------SQSLYEISGGQSGC 102 (673)
T ss_pred cceeeeccccce-EEEeecCCc-eeEEEecccCCCC---ccceeecccc-chHHHHhhh-------hcceeeeccCcCce
Confidence 388899988877 556655554 2334443333221 2221111111 123566553 34689999999999
Q ss_pred EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748 221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300 (502)
Q Consensus 221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~ 300 (502)
|.|||+.. +.....+.+|+..|+++.++.. ..+||+++..|.|.|..+.++.
T Consensus 103 Vkiwdl~~---------------------------kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 103 VKIWDLRA---------------------------KLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred eeehhhHH---------------------------HHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCc
Confidence 99999963 4445567799999999999988 5599999999999999999998
Q ss_pred eeEeeccCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748 301 CNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 301 ~~~~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~ 378 (502)
....|...+ ..|.-+.|+|....+|.+++.+|.|.+||+....... ....|..+...++|+|.++.+|++.+.|..|.
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence 888886543 4566899999987889999999999999998876543 23468889999999999999999999999999
Q ss_pred EEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
+||++.. .....+ ....+.+.++|+++| .+|++|...|.|..||++..+ .++..+..|...|++++|-
T Consensus 235 ~yD~~s~---------~s~~~l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 235 IYDIRSQ---------ASTDRL-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred Eeecccc---------ccccee-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEee
Confidence 9999965 233333 346788999999998 999999999999999999765 4678888899999999998
Q ss_pred CCC
Q 010748 459 EDS 461 (502)
Q Consensus 459 pd~ 461 (502)
|.-
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 764
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=194.07 Aligned_cols=242 Identities=17% Similarity=0.262 Sum_probs=193.8
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.|+|++|++++.||.|++|+...... .|.. ...|...|.+++.... +|++|
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd~e-~P~t-------------------------i~~~g~~v~~ia~~s~---~f~~~ 72 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSDEE-EPET-------------------------IDISGELVSSIACYSN---HFLTG 72 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCccc-CCch-------------------------hhccCceeEEEeeccc---ceEEe
Confidence 78999999999999999999764321 1110 1126788888887643 89999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 365 (502)
+.+++|.+|.+..+..-..+...+-++.+++|+.+| .+++.||.|-.|++.++..........+|.++|.++.|+|.+.
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC
Confidence 999999999999887666666667899999999999 8999999999999999998888888889999999999999865
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010748 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
++++++.||.|++|++..+..........+...+ .....++.++|+|++ ..++..+.|+.|++|+..+..+......
T Consensus 152 -fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 152 -FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-ILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred -EEEEEecCceEEEEEcccchhhhhcccCCccccc-cccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecc
Confidence 8999999999999999987321111000000000 114567889999998 6677777899999999999886555555
Q ss_pred cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 446 ~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
..+...+..++|+|.|.| ||+++.+|.|.|||+.+
T Consensus 229 ~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 666666999999999997 99999999999999986
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=186.27 Aligned_cols=208 Identities=20% Similarity=0.306 Sum_probs=172.7
Q ss_pred cCcccceeeEEeccCCC-cEEEEEecCCcEEEEeCCCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748 263 GSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~-~~l~sgs~dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw 337 (502)
..|.++|++++|+|... +++|+|..-|.|-+||+.+. .-+..+..|+.+|.+|.|+|.+...+++.|+||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 35889999999999855 79999999999999999532 23556788999999999999999999999999999999
Q ss_pred ecCCCCCccceEe--ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748 338 DARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 338 d~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
|+........... ....+..+.|+.... .++.+..=|.+.+||+|+. ......+..|...|++++++|.
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~--------~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTD--------GSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecC--------CccchhhhhhhcccceeecCCC
Confidence 9987654332222 344566777877655 5677777779999999998 3557777889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCeeE--EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 416 VPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
.+.+|+|+|.|++++|||++...... +.....|...|.++.|||.+.. |+|.+.|..|+|||..
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 99999999999999999998754322 4556678999999999999985 8888999999999984
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.2e-21 Score=173.72 Aligned_cols=304 Identities=17% Similarity=0.268 Sum_probs=209.2
Q ss_pred CCCCccccccccccCC----C-ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC-C
Q 010748 135 DDEDSEDLEDMTINPN----D-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-K 208 (502)
Q Consensus 135 ~~~~~~~v~~~~~~p~----~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-~ 208 (502)
.++|...|..++|.+- . ..+|+++.. .+.+|.+..... ...+....+...+.-.+.++|..- +. .
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~----rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd----~~~~ 104 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN----RVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYD----SNTG 104 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc----EEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEec----CCCC
Confidence 3567788888888842 2 233333322 466666655441 112222222222333355677421 22 3
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
..+||+|+.-|.|+|.|+.++. ....+.+|..+|+.|.++|...++|++||.|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~---------------------------~~~~~~ghG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQ---------------------------CSKNYRGHGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CeeEEeecceeEEEEEecchhh---------------------------hccceeccCccchhhhcCCCCCcEEEEecCC
Confidence 6689999999999999997533 3335668999999999999988999999999
Q ss_pred CcEEEEeCCCCeeeEee---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-------------------
Q 010748 289 KQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------------------- 346 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------- 346 (502)
.+|++|++++..|+..| .+|.+.|.++.|++++ .+|++++.|.+|++|++..++...
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt 236 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPT 236 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCc
Confidence 99999999999999988 5799999999999999 799999999999999998432110
Q ss_pred ---------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCC-----CCCCCCccceEEeccCCCeeEE--
Q 010748 347 ---------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD-----PDSTSQQSSFTLHAHDKAVCTI-- 410 (502)
Q Consensus 347 ---------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l-- 410 (502)
....|...|-|+.|-- .++++-+-++.|.+|-.-..... +.......+..+.-....|.-+
T Consensus 237 ~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 237 PKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 0112344566666653 37888788889999987322111 0000012223333344445444
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE--ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
+|.|.+ .+||.|...|.|.+||++...+....+ .......|...+|+.|+. +|+....+++|.-||..
T Consensus 314 ~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 314 AFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 556666 899999999999999999877632222 223356799999999999 56677899999999864
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=9.2e-22 Score=188.30 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=179.9
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
+.+.| -|....|++++.|.+|++||+........ ..+.+|...|.+++
T Consensus 104 fDl~w-------apge~~lVsasGDsT~r~Wdvk~s~l~G~-------------------------~~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 104 FDLKW-------APGESLLVSASGDSTIRPWDVKTSRLVGG-------------------------RLNLGHTGSVKSEC 151 (720)
T ss_pred Eeecc-------CCCceeEEEccCCceeeeeeeccceeecc-------------------------eeecccccccchhh
Confidence 56666 46677899999999999999986443321 13458999999999
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCe---------------------------eeEeeccCCCCeEE---EEEcCCCCc
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGK---------------------------CNLTLEHHTDKVQA---VAWNHHSPQ 323 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~---------------------------~~~~~~~h~~~v~~---l~~~~~~~~ 323 (502)
|.|.....|++|+.||.|.|||++-.. .++....|...|.+ +.+..++ .
T Consensus 152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~ 230 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-S 230 (720)
T ss_pred hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-c
Confidence 999999999999999999999986321 11122234445555 5555666 6
Q ss_pred EEEEEeC-CCcEEEEecCCCCCccceE--------ee---cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748 324 ILLSGSF-DRSVVMKDARISTHSGFKW--------AV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391 (502)
Q Consensus 324 ~l~s~s~-dg~i~iwd~~~~~~~~~~~--------~~---~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~ 391 (502)
.|++++. |+.|+|||+|......... .+ .-.+.++.....|. ++++.+.|+.|++|+++....
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~---- 305 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSI---- 305 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCc----
Confidence 7888877 9999999999765432111 11 33577888888777 455555699999999998753
Q ss_pred CCCccceEEeccCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748 392 TSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 392 ~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~ 469 (502)
.++..+.++... -..-..+|++ .+|++|+.|...++|.+.+... ....+.+|...|++++|.|..---+++++
T Consensus 306 ---sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcS 380 (720)
T KOG0321|consen 306 ---SPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCS 380 (720)
T ss_pred ---CchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeec
Confidence 445555444322 1222467887 9999999999999999988763 45566789999999999875433377789
Q ss_pred CCCcEEEEECCCCc
Q 010748 470 SKGKLEIWDTLSDA 483 (502)
Q Consensus 470 ~dg~i~vwd~~~~~ 483 (502)
.|.+++||++..+-
T Consensus 381 dD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 381 DDFRVKIWRLSNGL 394 (720)
T ss_pred cCcceEEEeccCch
Confidence 99999999996543
No 142
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=170.60 Aligned_cols=304 Identities=11% Similarity=0.144 Sum_probs=206.2
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE-E
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-V 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-~ 214 (502)
..|..+|++++|+.+|+.|++++.++ .++||..+.-.. ..|..+....++. .+..+.|+||-+-++ .
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr---~Ir~w~~~DF~~------~eHr~~R~nve~d---hpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDR---SIRLWDVRDFEN------KEHRCIRQNVEYD---HPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCc---eEEEEecchhhh------hhhhHhhccccCC---CceEEEECCCcceEEEE
Confidence 46899999999999999999999887 677777764322 2232222222221 122234478855544 4
Q ss_pred ecCCCcEEEeeCCCCCC-cCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748 215 GSMEPAIEIWDLDVIDE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v 293 (502)
.-...++++|.+..... ..+... ...-.......|.-.|..+-.... ..+|+|++.|..|.+
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~----------------v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHF----------------VHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICL 213 (420)
T ss_pred EccCCEEEEEEeeecccCCCCccc----------------ccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEE
Confidence 44557899998853211 111000 000111122346667777766655 679999999999999
Q ss_pred EeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC--------CccceEeecCCeeEEEeCCCCC
Q 010748 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--------HSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~v~~~~~~~ 365 (502)
|++. |+.+.++......-+..+.+|+| +++++++..--|++|.+--.+ ....+.+|.+.|..++|+++..
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 9998 99999988777778888999999 999999999999999863211 2233557899999999999765
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE----EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
.+++.+.||++++||+.-....... ...+.. +..-.+.-..+.++|.+ ..|+.+ ....+++|..++++...
T Consensus 292 -r~vtvSkDG~wriwdtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s-~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 292 -RAVTVSKDGKWRIWDTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVS-FGSDLKVFASEDGKDYP 366 (420)
T ss_pred -eeEEEecCCcEEEeeccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCC-cEEEee-cCCceEEEEcccCccch
Confidence 7999999999999998643211110 111111 22223444589999988 555543 34569999998876322
Q ss_pred EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
. --..|.+.|.+++|+++|+| ++++| |..++|+.
T Consensus 367 ~-~e~~h~~~Is~is~~~~g~~-~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 367 E-LEDIHSTTISSISYSSDGKY-IATCG-DRYVRVIR 400 (420)
T ss_pred h-HHHhhcCceeeEEecCCCcE-Eeeec-ceeeeeec
Confidence 2 22468899999999999996 77766 45777775
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2.2e-21 Score=185.71 Aligned_cols=256 Identities=20% Similarity=0.246 Sum_probs=183.4
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
.....||++..+|.|.++|.....-. -.......+..|..+|..+.|-| +...|++++
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr---------------------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsas 119 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFR---------------------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSAS 119 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcc---------------------hhhhhhcccccccceeEeeccCC-CceeEEEcc
Confidence 35788999999999999998532110 01222334558999999999999 588999999
Q ss_pred cCCcEEEEeCCCCeeeEe--eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc------------------
Q 010748 287 ADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------------------ 346 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------ 346 (502)
.|.++++||+.+.+++.. +.+|.+.|.+++|.|.++..|++|+.||.|.|||+|-.....
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 999999999999998877 889999999999999999999999999999999998432100
Q ss_pred ---------ceEeecCC----eeEEEeCCCCCCEEEEEeC-CCcEEEEECCCCCCCCCCCCCccceEEecc---CCCeeE
Q 010748 347 ---------FKWAVAAD----VESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCT 409 (502)
Q Consensus 347 ---------~~~~~~~~----v~~v~~~~~~~~~~~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h---~~~v~~ 409 (502)
.-..+... |+.+.| .+.. .|++++. |+.|++||+|+........ ......+..| ...+++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~-tlaSaga~D~~iKVWDLRk~~~~~r~e-p~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF-KDES-TLASAGAADSTIKVWDLRKNYTAYRQE-PRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE-eccc-eeeeccCCCcceEEEeecccccccccC-CCcccCccCcccceeeeEE
Confidence 00011222 444444 4444 5666665 9999999999874322110 1122233334 346788
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 410 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 410 l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
+.....|..++|+| .|++|++|++.......+..+.++... -..-..+|++.+ |++|+.+...++|.+.+-+.-..
T Consensus 277 L~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 277 LILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce-EeccCCCcceeeeeecCccCChh
Confidence 88888884555555 599999999998765555555554322 223356899997 88999999999999988766544
Q ss_pred cc
Q 010748 488 RF 489 (502)
Q Consensus 488 ~~ 489 (502)
.+
T Consensus 355 ~l 356 (720)
T KOG0321|consen 355 LL 356 (720)
T ss_pred hh
Confidence 33
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=3.3e-20 Score=173.14 Aligned_cols=296 Identities=14% Similarity=0.229 Sum_probs=215.0
Q ss_pred CccccccccccCC--CceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCC-CCEEEE
Q 010748 138 DSEDLEDMTINPN--DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAV 214 (502)
Q Consensus 138 ~~~~v~~~~~~p~--~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~la~ 214 (502)
-+..|.+++|++. |++| ++-.++....|.||.|..+.... ......+.+ +..+| +|. .+++++
T Consensus 153 f~~GV~~vaFsk~~~G~~l-~~vD~s~~h~lSVWdWqk~~~~~-~vk~sne~v-----~~a~F-------HPtd~nliit 218 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLL-CAVDDSNPHMLSVWDWQKKAKLG-PVKTSNEVV-----FLATF-------HPTDPNLIIT 218 (626)
T ss_pred ccccceeeeecccCCCceE-EEecCCCccccchhhchhhhccC-cceeccceE-----EEEEe-------ccCCCcEEEE
Confidence 3567999999976 3444 44444455688999998665311 111111111 33344 564 555666
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
.+ .|.+.+|++..+.......++.+ ..+.-|+|++|.+++. +++|..+|.|.||
T Consensus 219 ~G-k~H~~Fw~~~~~~l~k~~~~fek-----------------------~ekk~Vl~v~F~engd--viTgDS~G~i~Iw 272 (626)
T KOG2106|consen 219 CG-KGHLYFWTLRGGSLVKRQGIFEK-----------------------REKKFVLCVTFLENGD--VITGDSGGNILIW 272 (626)
T ss_pred eC-CceEEEEEccCCceEEEeecccc-----------------------ccceEEEEEEEcCCCC--EEeecCCceEEEE
Confidence 55 58999999876554433332221 1225699999999954 7899999999999
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC------------------------------
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------------------------------ 344 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------------------------------ 344 (502)
+..+.+..+....|.+.|.+++...+| .|++|+.|+.|..||-.-.+.
T Consensus 273 ~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 273 SKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred eCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 998888888777999999999999998 577799999999998321000
Q ss_pred ----------ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748 345 ----------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 345 ----------~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
......|......++.+|+.. ++++++.|+.+++|+ . .++.++.. -..++.|+.|+|
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~---------~k~~wt~~-~~d~~~~~~fhp 417 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--D---------HKLEWTKI-IEDPAECADFHP 417 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--C---------CceeEEEE-ecCceeEeeccC
Confidence 001123445677788899654 899999999999999 2 25666655 456789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010748 415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
.| .++.|+..|...+.|..+... +..... ..++++++|+|+|.+ ||.|+.|+.|+||-+..+.....+.+...+
T Consensus 418 sg--~va~Gt~~G~w~V~d~e~~~l--v~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 418 SG--VVAVGTATGRWFVLDTETQDL--VTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred cc--eEEEeeccceEEEEeccccee--EEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 76 899999999999999998663 333333 788999999999995 999999999999999888777666665544
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=181.61 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=223.4
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg 219 (502)
.+|.+|+|+...+.||++..++ .++||.....--.++.++++.+..+ -.++| . .+..|.+.+.+|
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g---~IEiwN~~~~w~~~~vi~g~~drsI----E~L~W-------~-e~~RLFS~g~sg 90 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG---NIEIWNLSNNWFLEPVIHGPEDRSI----ESLAW-------A-EGGRLFSSGLSG 90 (691)
T ss_pred cceEEEEEeccCCceeeeccCC---cEEEEccCCCceeeEEEecCCCCce----eeEEE-------c-cCCeEEeecCCc
Confidence 5799999999999999999998 7899988765543344444444333 45677 3 567788888899
Q ss_pred cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~ 299 (502)
.|.-||+.+.... .......++|++++.+|. ...++.|+.||.+..++...+
T Consensus 91 ~i~EwDl~~lk~~---------------------------~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 91 SITEWDLHTLKQK---------------------------YNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred eEEEEecccCcee---------------------------EEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCc
Confidence 9999999864332 233456689999999999 579999999998888888877
Q ss_pred eeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----e----ecCCeeEEEeCCCCCCEEE
Q 010748 300 KCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----A----VAADVESLAWDPHAEHSFV 369 (502)
Q Consensus 300 ~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~----~~~~v~~v~~~~~~~~~~~ 369 (502)
+... .|...++.|.++.|+|++ ..+++|+.||.|++||..++....... . ...-|.++.|-.++ .++
T Consensus 143 ~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~ 219 (691)
T KOG2048|consen 143 KITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIA 219 (691)
T ss_pred eEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEE
Confidence 6543 344457899999999999 789999999999999999877544111 1 12236777777543 799
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEEEecC
Q 010748 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNP 447 (502)
Q Consensus 370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~ 447 (502)
+|...|+|.+||...+ ..+.....|.+.|.+++.++++ ..+++++.|+.|..|...++.. .....+..
T Consensus 220 sgDS~G~V~FWd~~~g---------TLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 220 SGDSAGTVTFWDSIFG---------TLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred EecCCceEEEEcccCc---------chhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 9999999999999987 7788889999999999999987 8999999999999998876642 23445567
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
|...|.+++..++ .|++||.|..+.+-....
T Consensus 290 h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred Ccccceeeeeecc---eEEecceeeEEEEccccc
Confidence 8888999999988 588999999988876655
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.7e-21 Score=182.86 Aligned_cols=312 Identities=16% Similarity=0.228 Sum_probs=225.6
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
-.|.+.|.++...|.|.+|++|+.+| +++||.+.++. .++. ..+.+...|++|.+. ++-..||++
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDG---tvriWEi~TgR----cvr~---~~~d~~I~~vaw~P~-----~~~~vLAvA 461 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDG---TVRIWEIATGR----CVRT---VQFDSEIRSVAWNPL-----SDLCVLAVA 461 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCC---cEEEEEeecce----EEEE---EeecceeEEEEecCC-----CCceeEEEE
Confidence 46889999999999999999999887 67888887665 3332 224445589999532 344456666
Q ss_pred cCCCcEEEeeCCCCCCcCc---ceecCCc-ch-----hhhhhccccCC-cccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 216 SMEPAIEIWDLDVIDEVQP---HVILGGI-DE-----EKKKKKSKKGK-KSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~---~~~l~~~-~~-----~~~~~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.... +.|-+...++.+.. .-.|... .. +...|...... ...-......|...|..+.|+.. +.+|++.
T Consensus 462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV 539 (733)
T KOG0650|consen 462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATV 539 (733)
T ss_pred ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEe
Confidence 5444 66666544422211 1111111 00 00011111000 11112344468999999999999 4588887
Q ss_pred ecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 286 SAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 286 s~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
..+ ..|.|.++...+...-|+...+.|+++.|+|.. .+|++++ -..|++||+..+..+.........|.+++.+|
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 654 469999998887777777678899999999999 5555555 46899999988776665666677899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC-------C
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL-------S 435 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~-------~ 435 (502)
.|. .+++|+.++.+..||+.-. .++..++..|...+++++|++.- .++++|+.||++.||-- .
T Consensus 618 ~GD-nli~gs~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 618 NGD-NLILGSYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred CCC-eEEEecCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhc
Confidence 877 5888999999999999877 57889999999999999999987 79999999999999842 2
Q ss_pred CCCeeEEEEecCCCCc----EEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748 436 NNQPSCIASRNPKAGA----VFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 436 ~~~~~~~~~~~~~~~~----v~~~~~spd~~~ll~sg~~dg~i~vw 477 (502)
+.-...+..+.+|... |..+.|+|..++ |.++|.||+|++|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 2334566777777654 889999999997 7778899999998
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=6.8e-21 Score=168.54 Aligned_cols=291 Identities=19% Similarity=0.280 Sum_probs=208.4
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCC-----CCCCCeeeeec--cccCCCcceeeeecCCCCCCCCCCE
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-----GGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-----~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~ 211 (502)
.+-...+.|+|+|.-|++-+.++ .|.+|.+-... ........|.. .+-+...+.-.|.+.--...|+.++
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn---~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDN---CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred hhhhccceeCCCCceEEeecccC---eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 34556789999999999998886 56777553221 11111111111 1112223445665432333588999
Q ss_pred EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc---ceeeEEeccCCCcEEEEEecC
Q 010748 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD---SVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~sgs~d 288 (502)
+|+.+.+.-|++||.-++...... ....|.+ +..+|+|+|+|. .|++|- .
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy-------------------------~~ydh~de~taAhsL~Fs~DGe-qlfaGy-k 178 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASY-------------------------RAYDHQDEYTAAHSLQFSPDGE-QLFAGY-K 178 (406)
T ss_pred eeeccccCceeeeeccccccccch-------------------------hhhhhHHhhhhheeEEecCCCC-eEeecc-c
Confidence 999999999999998765432211 1123433 445899999955 666554 5
Q ss_pred CcEEEEeC-CCCee--eE-ee----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEe
Q 010748 289 KQVKIWDV-AAGKC--NL-TL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360 (502)
Q Consensus 289 g~v~vwd~-~~~~~--~~-~~----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 360 (502)
..|+++|+ +.|+- +. ++ .+..+-+.|++|+|.....++.|++..++-||.-....+.....+|.+.|+.++|
T Consensus 179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEe
Confidence 78999999 44432 11 11 2236788999999999789999999999999998888888878899999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC-CeeEE--EEcCCCCCEEEEEeCCCcEEEEECCC-
Q 010748 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTI--SYNPLVPNLLATGSTDKMVKLWDLSN- 436 (502)
Q Consensus 361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l--~~sp~~~~~l~t~s~dg~i~vwd~~~- 436 (502)
.++|.+++.-+..+-.|.+||+|.. ..+++.+..|.. .-..| ...|.+ ++|++|+.||.|++||+..
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~--------~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYS--------RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhc--------cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCC
Confidence 9998855555556889999999987 578888888866 33344 445777 9999999999999999988
Q ss_pred CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748 437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d 471 (502)
+. .+..+..+...++.++++|--+ ++|+++..
T Consensus 330 gn--~~sv~~~~sd~vNgvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 330 GN--EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred CC--cccccccccccccceecCcccc-eeeeccCc
Confidence 44 3555667888999999999977 68876643
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-20 Score=166.08 Aligned_cols=268 Identities=17% Similarity=0.310 Sum_probs=191.0
Q ss_pred CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCee---eeeccccCCCcceeeeecCCCCCCCC-CC
Q 010748 135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY---VHHHIIIPAFPLCMAWLDCPLKDREK-GN 210 (502)
Q Consensus 135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~s~~-~~ 210 (502)
+..|.+-|.++.|.+-|+.+|+++.+. +++||.++...+ .-... .-|+.. ...+.|. +|. |+
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq---~vkI~d~~~~s~-~W~~Ts~Wrah~~S----i~rV~WA------hPEfGq 74 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQ---TVKIWDSTSDSG-TWSCTSSWRAHDGS----IWRVVWA------HPEFGQ 74 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCC---cEEEEeccCCCC-ceEEeeeEEecCCc----EEEEEec------Cccccc
Confidence 346888899999999999999999997 678888755443 11111 223222 3678886 454 99
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEEEecCC
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADK 289 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg 289 (502)
.+|+++.|+++.||.-..... ....+.......+......|+.+.|.|.. +-+||+++.||
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~------------------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG 136 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSE------------------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG 136 (361)
T ss_pred eEEEEecCCceeeeeeccccc------------------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence 999999999999998531100 01112233444556677899999999963 45899999999
Q ss_pred cEEEEeCCCC------eeeEeec-------cCCCCeEEEEEcCCC--CcEEEEEeCC-----CcEEEEecCCCC----Cc
Q 010748 290 QVKIWDVAAG------KCNLTLE-------HHTDKVQAVAWNHHS--PQILLSGSFD-----RSVVMKDARIST----HS 345 (502)
Q Consensus 290 ~v~vwd~~~~------~~~~~~~-------~h~~~v~~l~~~~~~--~~~l~s~s~d-----g~i~iwd~~~~~----~~ 345 (502)
+|+||+.... ...+.++ .+..+..|+.|+|.. ..+|++|+.+ +.+.||...... ..
T Consensus 137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv 216 (361)
T KOG2445|consen 137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV 216 (361)
T ss_pred EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence 9999986543 2333333 466788999999753 3577777765 478888765443 23
Q ss_pred cceEeecCCeeEEEeCCCCC---CEEEEEeCCCcEEEEECCCCCC--------CC---CCCCCccceEEeccCCCeeEEE
Q 010748 346 GFKWAVAADVESLAWDPHAE---HSFVVSLEDGTIKGFDIRTAKS--------DP---DSTSQQSSFTLHAHDKAVCTIS 411 (502)
Q Consensus 346 ~~~~~~~~~v~~v~~~~~~~---~~~~~~~~dg~v~i~d~~~~~~--------~~---~~~~~~~~~~~~~h~~~v~~l~ 411 (502)
..+..+..+|+.++|.|.-+ .++++++.|| |+||.++.... .. .......+..+..|++.|..+.
T Consensus 217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR 295 (361)
T ss_pred hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence 33447889999999999733 4788999999 99999985321 00 0111234455678999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 412 YNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 412 ~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
|+-.| ..|++.|.||.||+|...-
T Consensus 296 wNmtG-tiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 296 WNMTG-TILSSTGDDGCVRLWKANY 319 (361)
T ss_pred Eeeee-eEEeecCCCceeeehhhhh
Confidence 99988 9999999999999997654
No 149
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.4e-21 Score=167.84 Aligned_cols=250 Identities=19% Similarity=0.237 Sum_probs=190.3
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
.|++|++...|.-++++....--. ........+.+.+..|..+|++++.+. .++||||.|-+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~---------------~s~~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDet 64 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCT---------------DSVKPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDET 64 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccc---------------cccceeeeccccccccccceeEEEecc---eeEeccCCCCc
Confidence 478899988888888764220000 011112234566789999999999974 49999999999
Q ss_pred EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEE
Q 010748 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 369 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~ 369 (502)
|+|||+.+.+.+..+-.|.+.|+++.|.+.-. +.|++|+.||.|.+|+...-.....+..|.+.|+.++.+|.+. +.+
T Consensus 65 I~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LAL 143 (362)
T KOG0294|consen 65 IHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LAL 143 (362)
T ss_pred EEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEE
Confidence 99999999999999999999999999988652 3799999999999999998887777888999999999999765 788
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010748 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 449 (502)
Q Consensus 370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~ 449 (502)
+.+.|+.++.||+-.++. -+.+.- ....+.+.|+|.| .+++.++.++ |-+|.+.+... +......
T Consensus 144 sVg~D~~lr~WNLV~Gr~---------a~v~~L-~~~at~v~w~~~G-d~F~v~~~~~-i~i~q~d~A~v---~~~i~~~ 208 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRV---------AFVLNL-KNKATLVSWSPQG-DHFVVSGRNK-IDIYQLDNASV---FREIENP 208 (362)
T ss_pred EEcCCceeeeehhhcCcc---------ceeecc-CCcceeeEEcCCC-CEEEEEeccE-EEEEecccHhH---hhhhhcc
Confidence 888999999999988732 222221 2223449999998 6666666654 89999887652 2222222
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCC
Q 010748 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK 496 (502)
Q Consensus 450 ~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 496 (502)
..+.|+.|...+ .|++|+.++.|++||..+..++....+|....+
T Consensus 209 ~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 209 KRILCATFLDGS--ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK 253 (362)
T ss_pred ccceeeeecCCc--eEEEecCCceEEEeccCCCccceeeecchhhee
Confidence 557788886655 388899999999999998777777666655443
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=2.3e-20 Score=162.77 Aligned_cols=208 Identities=20% Similarity=0.349 Sum_probs=167.9
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee-eEee-----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~-~~~~-----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw 337 (502)
.+-+.|.|+.|.|+ +..||+-. |..|.+|++..+.. +..+ ..|....++-+|+|...-..+....++++..|
T Consensus 121 eavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEE
Confidence 45568999999998 55676655 78999999987754 3333 23566788899999332334445568999999
Q ss_pred ecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748 338 DARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 338 d~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
|+|+..... ....|...|..+.|+|+...++++++.||.|++||.|+. ..+++.+.+|...|.++.|+|..
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEecCcc
Confidence 999866543 234677889999999998889999999999999999998 58999999999999999999988
Q ss_pred CCEEEEEeCCCcEEEEECCCCC------------------------e---eEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748 417 PNLLATGSTDKMVKLWDLSNNQ------------------------P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 417 ~~~l~t~s~dg~i~vwd~~~~~------------------------~---~~~~~~~~~~~~v~~~~~spd~~~ll~sg~ 469 (502)
..+|++|+.|..|.+|....-. + -.+.++..|...|++++|+.-.+++||+-+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 8999999999999999764310 0 124466778899999999999999999999
Q ss_pred CCCcEEEEECCC
Q 010748 470 SKGKLEIWDTLS 481 (502)
Q Consensus 470 ~dg~i~vwd~~~ 481 (502)
.||++.|=.+..
T Consensus 351 YDGRviIs~V~r 362 (370)
T KOG1007|consen 351 YDGRVIISSVPR 362 (370)
T ss_pred cCceEEeecCCh
Confidence 999999876643
No 151
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=2.4e-20 Score=185.23 Aligned_cols=251 Identities=18% Similarity=0.278 Sum_probs=194.2
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
.|+.+.++ +.++||.|+.+|.|.+||+....... ..........|..+|+.+.
T Consensus 246 ~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 246 TCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDTP---------------------PSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred eEEEeccC------CcceEEeeccCceEEEEEccCCCCCC---------------------CcccccccccCCcCeEEEE
Confidence 56666422 68899999999999999997543311 1223334457999999999
Q ss_pred eccCC-CcEEEEEecCCcEEEEeCCCCee------eEeec------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 274 WNKEF-RNILASASADKQVKIWDVAAGKC------NLTLE------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 274 ~~~~~-~~~l~sgs~dg~v~vwd~~~~~~------~~~~~------~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
|..+- ..-++++|.||.|+.|+++.-.. ..... .-...+++++|.+..++.|+.|+..|.|..-...
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 97652 13588999999999998764322 11111 1234689999999999999999999999874433
Q ss_pred CCCC--------ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE
Q 010748 341 ISTH--------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 341 ~~~~--------~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 412 (502)
..+. ......|.+.|.++.++|.+..+|++++ |.+|++|..... ..++..+..+...|++++|
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--------~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--------ASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC--------CCcchhhhhccceeeeeEE
Confidence 2221 2234467889999999999987777777 999999998843 3778888888889999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
||..+.+++++..+|.|.+||+......++.+...+....+.+.|++.|+ +|++|...|.+.+|++..
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 99999999999999999999998876656666666667778889999999 699999999999999964
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=1.7e-20 Score=170.21 Aligned_cols=223 Identities=19% Similarity=0.310 Sum_probs=178.5
Q ss_pred ccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeC
Q 010748 258 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF 330 (502)
Q Consensus 258 ~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~ 330 (502)
....+.||+.+|..++|+|.+.+.|||||.|.+|.||.+..+ .++..+.+|...|--+.|||.-.++|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 334567999999999999998999999999999999998754 4567788999999999999999999999999
Q ss_pred CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC-eeE
Q 010748 331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCT 409 (502)
Q Consensus 331 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~-v~~ 409 (502)
|.+|.+|++.++..... ..|...|.+++|+.+|. ++++.+.|..|++||.|++ ..+..-.+|.+. -..
T Consensus 153 Dn~v~iWnv~tgeali~-l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALIT-LDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPAR 221 (472)
T ss_pred CceEEEEeccCCceeee-cCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC---------cEeeecccccCCCcce
Confidence 99999999999887663 45999999999999876 8999999999999999997 666666777653 345
Q ss_pred EEEcCCCCCEEEEEe---CCCcEEEEECCCCC-eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 410 ISYNPLVPNLLATGS---TDKMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 410 l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
+.|-.++ .++.||- .+.++-+||..+.. +.....+.... .|.---|.++...+.++|-.|+.|+-|.+......
T Consensus 222 aifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~ 299 (472)
T KOG0303|consen 222 AIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF 299 (472)
T ss_pred eEEeccC-ceeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence 5666666 5444443 36789999987643 44555555544 46556678988877778888999999999887765
Q ss_pred cccccCCC
Q 010748 486 SNRFSKYS 493 (502)
Q Consensus 486 ~~~~~~~~ 493 (502)
...+..+.
T Consensus 300 ~hyln~f~ 307 (472)
T KOG0303|consen 300 VHYLNTFS 307 (472)
T ss_pred eEEecccc
Confidence 55444443
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=2.1e-19 Score=171.92 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=166.3
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
++++++++.++.|++||+.+..... .+..| ..+.+++|+|++..++++++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---------------------------~~~~~-~~~~~l~~~~dg~~l~~~~~~~ 52 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---------------------------TFPVG-QRPRGITLSKDGKLLYVCASDS 52 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---------------------------EEECC-CCCCceEECCCCCEEEEEECCC
Confidence 3578899999999999997543221 12223 3467899999966455778889
Q ss_pred CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 368 (502)
+.|++||+.+++.+..+..+.. +..+.|+|++..++++++.++.|++||+++.+... .......+.+++|+|++. ++
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~-~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIPVGVEPEGMAVSPDGK-IV 129 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-EeeCCCCcceEEECCCCC-EE
Confidence 9999999999988877765443 56789999994444555678999999998765433 233345578899999876 66
Q ss_pred EEEeCCC-cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCCeeEEEEec
Q 010748 369 VVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 369 ~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
+++..++ .+.+||.++. ....... ....+.+++|+|++ .+| +++..++.|++||+.+++........
T Consensus 130 ~~~~~~~~~~~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTY---------EIVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EEEecCCCeEEEEeCCCC---------eEEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 6666554 5777898765 3333322 23345789999998 555 55567999999999987632222221
Q ss_pred C---C--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 447 P---K--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 447 ~---~--~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
. + ......++|+|++++++++.+.++.|.+||+.+++.+...
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 1 1 1123468899999976666666778999999888766543
No 154
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=167.54 Aligned_cols=195 Identities=15% Similarity=0.244 Sum_probs=152.9
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEEEec
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASA 287 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs~ 287 (502)
.+.+|++...|.|++||..++..++ .+.+|...++.++|... +.+.+.+|+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~---------------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLE---------------------------EFKGPPATTNGVRFISCDSPHGVISCSS 92 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhh---------------------------eecCCCCcccceEEecCCCCCeeEEecc
Confidence 4679999999999999998754443 45578888889999764 6789999999
Q ss_pred CCcEEEEeCCCCeeeEee--ccCC-CCeEEEEEcCCCCcEEEEEeC----CCcEEEEecCCCCC-cc-ceEeecCCeeEE
Q 010748 288 DKQVKIWDVAAGKCNLTL--EHHT-DKVQAVAWNHHSPQILLSGSF----DRSVVMKDARISTH-SG-FKWAVAADVESL 358 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~--~~h~-~~v~~l~~~~~~~~~l~s~s~----dg~i~iwd~~~~~~-~~-~~~~~~~~v~~v 358 (502)
||+|++||++.......+ ..+. .+..|++.+-.+ +++++|+. +-.|.+||+|..+. +. ....|...|+++
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL 171 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence 999999999987554433 4455 466777777666 77887754 67899999998776 22 234789999999
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
+|+|..++++++|+.||.|.+||+..... ...+.....|...|.++.|...+-..|.+-+...+..+|++..+
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 99999999999999999999999987632 23444555577789999998766456888888888999987654
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.7e-19 Score=174.17 Aligned_cols=236 Identities=20% Similarity=0.300 Sum_probs=189.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+.+.+.||++-.+|.|.||++...=...+. ...+-.+.|-+|+|.+. ..|+|.
T Consensus 34 s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v-------------------------i~g~~drsIE~L~W~e~--~RLFS~ 86 (691)
T KOG2048|consen 34 SHKSNQLAVSRTDGNIEIWNLSNNWFLEPV-------------------------IHGPEDRSIESLAWAEG--GRLFSS 86 (691)
T ss_pred eccCCceeeeccCCcEEEEccCCCceeeEE-------------------------EecCCCCceeeEEEccC--CeEEee
Confidence 778888999999999999999752222111 11134578999999965 368999
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc--ceEeecCCeeEEEeCCC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPH 363 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~ 363 (502)
+.+|.|.-||+.++++...+....+.|++++.+|.+ ..++.|+.||.+..++........ .+....+.+.++.|+|+
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred cCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence 999999999999999999999889999999999999 889999999977777776654432 12244688999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce-------EEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-------TLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-------~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~ 435 (502)
+. .+++|+.||.|++||+.++. .+. .+.. ...-|+++.|-.+ ..|++|..-|+|++||..
T Consensus 166 ~~-~i~~Gs~Dg~Iriwd~~~~~---------t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 166 GT-KIAGGSIDGVIRIWDVKSGQ---------TLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSI 233 (691)
T ss_pred cc-EEEecccCceEEEEEcCCCc---------eEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEccc
Confidence 64 69999999999999999873 222 1111 2234778888754 689999999999999999
Q ss_pred CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 436 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 436 ~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
.+. ++..+..|.+.|.+++..+++.+ +.++|.|+.|..|...++..
T Consensus 234 ~gT--LiqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 234 FGT--LIQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred Ccc--hhhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCcc
Confidence 987 67788889999999999999884 88899999999998877754
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.7e-21 Score=194.74 Aligned_cols=251 Identities=20% Similarity=0.315 Sum_probs=193.4
Q ss_pred cccccccccCCCce----EEEEEecCCcceeEEEEEecC-CCCCCCee---eeeccccCCCcceeeeecCCCCCCC-CCC
Q 010748 140 EDLEDMTINPNDAV----IVCARNEDDVSHLEVYILEES-DGGDPNLY---VHHHIIIPAFPLCMAWLDCPLKDRE-KGN 210 (502)
Q Consensus 140 ~~v~~~~~~p~~~~----l~~~~~~~~~~~l~v~~~~~~-~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~s~-~~~ 210 (502)
..-..+.|.+.+.. ||.|..+| .|.+|.-..- .+....+. ..|... .+.+.+ ++ .++
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG---~I~ly~p~~~~~~~~~~~la~~~~h~G~----V~gLDf-------N~~q~n 130 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDG---NIVLYDPASIIANASEEVLATKSKHTGP----VLGLDF-------NPFQGN 130 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCC---ceEEecchhhccCcchHHHhhhcccCCc----eeeeec-------cccCCc
Confidence 34567788877776 55555555 4566655442 11111111 222222 244555 44 577
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
+||+|+.+|.|.|||+...+.-... ....-.+.|.+|+|+..-.++||+++.+|.
T Consensus 131 lLASGa~~geI~iWDlnn~~tP~~~-------------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 131 LLASGADDGEILIWDLNKPETPFTP-------------------------GSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred eeeccCCCCcEEEeccCCcCCCCCC-------------------------CCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 9999999999999999853321110 012356789999999998899999999999
Q ss_pred EEEEeCCCCeeeEeeccCCC--CeEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCccc-eEeecCCeeEEEeCCCC
Q 010748 291 VKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSGF-KWAVAADVESLAWDPHA 364 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~ 364 (502)
+.|||++..+.+..+..|.. .+..+.|||+....+++++.|. .|.+||+|....... ...|...|.++.|++.+
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence 99999999988888866554 4788999999988888888764 689999997665443 45899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
..++++++.|+.|.+|+..++ ..+..+......+..+.|+|..+.++++++.||.|.||.+....
T Consensus 266 ~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 889999999999999999997 77888888889999999999998999999999999999997754
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=8.9e-20 Score=176.38 Aligned_cols=300 Identities=14% Similarity=0.207 Sum_probs=222.7
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeee--ccccC---CCcceeeeecCCCCCCCCCC
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH--HIIIP---AFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~--~~~~~---~~~~~~~~~~~~~~~s~~~~ 210 (502)
..|++.|.++.|+|.+..|++++.+. ++-||.-+...+ +++-. -..+. .-.+..-| +|+++
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDk---smiiW~pd~~tG----iWv~~vRlGe~gg~a~GF~g~lw-------~~n~~ 329 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADK---SMIIWKPDENTG----IWVDVVRLGEVGGSAGGFWGGLW-------SPNSN 329 (764)
T ss_pred cCcccceEEEEEccchhhheecccCc---ceEEEecCCccc----eEEEEEEeecccccccceeeEEE-------cCCCC
Confidence 46999999999999999999999987 566666555442 22111 11111 00122334 78999
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
.+++-+..|-.++|..... ..........||.+.|.+++|.|.| .+|++.|.|.+
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~------------------------~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQT 384 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDK------------------------TFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQT 384 (764)
T ss_pred EEEEecccCcEEEEeccCc------------------------cceeeccccccccccceeeeecCCC-CEEEEeccccc
Confidence 9999999999999982211 1122233455899999999999995 59999999999
Q ss_pred EEEEeCCCC----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-------------------------
Q 010748 291 VKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI------------------------- 341 (502)
Q Consensus 291 v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~------------------------- 341 (502)
-+|+-.-.. -.+..-+-|...++|+++-+.. ..|++|.....+|+|+...
T Consensus 385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred eeeecccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 999865411 1233335688899999998864 7899999999999988530
Q ss_pred ------------------CCC---------------------------------ccceEeecCCeeEEEeCCCCCCEEEE
Q 010748 342 ------------------STH---------------------------------SGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 342 ------------------~~~---------------------------------~~~~~~~~~~v~~v~~~~~~~~~~~~ 370 (502)
+.. +..+++|...|.+++.+|++. ++++
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liAS 542 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIAS 542 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEee
Confidence 000 001234566799999999764 7888
Q ss_pred EeCCC-----cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEE
Q 010748 371 SLEDG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIA 443 (502)
Q Consensus 371 ~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~ 443 (502)
++... .|++|+..+. ..+..+..|+-.|+.++|||++ ++|++.|.|.++.+|....... ....
T Consensus 543 aCKS~~~ehAvI~lw~t~~W---------~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa 612 (764)
T KOG1063|consen 543 ACKSSLKEHAVIRLWNTANW---------LQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFA 612 (764)
T ss_pred hhhhCCccceEEEEEeccch---------hhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhc
Confidence 76543 5899999886 6677899999999999999998 9999999999999998855321 1122
Q ss_pred EecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--ccccc
Q 010748 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD--AGISN 487 (502)
Q Consensus 444 ~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~--~~~~~ 487 (502)
....|..-|+.+.|+|+..| |+|++.|.+|+||..... +.+.+
T Consensus 613 ~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 613 CLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred cccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhh
Confidence 36678889999999999997 999999999999999887 44444
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=5.1e-20 Score=160.76 Aligned_cols=253 Identities=20% Similarity=0.302 Sum_probs=192.5
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748 193 PLCMAWLDCPLKDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268 (502)
Q Consensus 193 ~~~~~~~~~~~~~s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 268 (502)
.+.+.|..- ...+-+||+|+.- +.|.|-.++.... . .... ....|.-+
T Consensus 47 lya~~Ws~~----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-e----------------------~~~~-a~fd~~YP 98 (364)
T KOG0290|consen 47 LYAMNWSVR----PDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-E----------------------LVED-ANFDHPYP 98 (364)
T ss_pred eeeeccccC----CCcceeEEEeeeccccCCeeEEEEEccCCC-c----------------------eecc-CCCCCCCC
Confidence 356667432 2246789999853 6777776652110 0 0000 11368999
Q ss_pred eeeEEeccCC----CcEEEEEecCCcEEEEeCCC--Cee--eEee-----ccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 010748 269 VLGLAWNKEF----RNILASASADKQVKIWDVAA--GKC--NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVV 335 (502)
Q Consensus 269 V~~l~~~~~~----~~~l~sgs~dg~v~vwd~~~--~~~--~~~~-----~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~ 335 (502)
++.+.|.|+. ..+|||++ ..+++|.+.. .+. ...+ ..+..++++..|+.-.++++.+++-|-++.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT 176 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT 176 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence 9999999983 23666655 3799999873 221 1111 346789999999999999999999999999
Q ss_pred EEecCCCCC---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE
Q 010748 336 MKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 336 iwd~~~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 412 (502)
|||+.++.. ...+..|...|..++|...+...|++.+.||.|++||+|.... ...++.-.....+...++|
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------STIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------STIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc------ceEEecCCCCCCcceeecc
Confidence 999998633 4557789999999999998888999999999999999998742 2233333333678899999
Q ss_pred cCCCCCEEEEEeCCC-cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 413 NPLVPNLLATGSTDK-MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 413 sp~~~~~l~t~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
+++.++++||-..|+ .|.|.|++... ..+..+.+|.+.|+.++|.|..+..|+++|.|..+.+||+..-
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 999999999987765 49999999865 3678899999999999999998878999999999999999753
No 159
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1.1e-20 Score=176.19 Aligned_cols=250 Identities=16% Similarity=0.224 Sum_probs=199.6
Q ss_pred CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748 128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 207 (502)
-|...++....++-|.++.++|+|+.|++|+. .++|.||.+..... .+...- ..+-|.|- +++.+|
T Consensus 454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---astlsiWDLAapTp---rikael---tssapaCy-----ALa~sp 519 (705)
T KOG0639|consen 454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---ASTLSIWDLAAPTP---RIKAEL---TSSAPACY-----ALAISP 519 (705)
T ss_pred CccccccccCcccceeeeEecCCCceEEeccc---cceeeeeeccCCCc---chhhhc---CCcchhhh-----hhhcCC
Confidence 34444555556788999999999999999975 46889998876654 222111 12222332 344489
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
|.++++++..||.|.|||+.. ......+.+|++.+.||..+++ +..|-+|+-
T Consensus 520 DakvcFsccsdGnI~vwDLhn---------------------------q~~VrqfqGhtDGascIdis~d-GtklWTGGl 571 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWDLHN---------------------------QTLVRQFQGHTDGASCIDISKD-GTKLWTGGL 571 (705)
T ss_pred ccceeeeeccCCcEEEEEccc---------------------------ceeeecccCCCCCceeEEecCC-CceeecCCC
Confidence 999999999999999999974 4455678899999999999999 568999999
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 367 (502)
|++|+-||+++++.+.... .++.|.++.++|++ ..|++|-.++.+-+...+....-. ...|.+.|.++.|.+.|. .
T Consensus 572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~kyq-lhlheScVLSlKFa~cGk-w 647 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKYQ-LHLHESCVLSLKFAYCGK-W 647 (705)
T ss_pred ccceeehhhhhhhhhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCCcccee-ecccccEEEEEEecccCc-e
Confidence 9999999999998776654 57889999999999 899999999999998887665443 567888999999999876 7
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 368 ~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
|++.+.|..+..|...-+ ..++... ...+|.++.++.+. ++|+||+.|+...||.+
T Consensus 648 fvStGkDnlLnawrtPyG---------asiFqsk-E~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYG---------ASIFQSK-ESSSVLSCDISFDD-KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCccc---------cceeecc-ccCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence 888899999999988766 4455444 45779999999987 99999999998888864
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=159.47 Aligned_cols=290 Identities=12% Similarity=0.218 Sum_probs=204.6
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 221 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I 221 (502)
.++++|++-|.+||+|+.+| .+-||.+.+-. ...+...|..++ .|++| |++|++|++++.|..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG---~vvI~D~~T~~--iar~lsaH~~pi----~sl~W-------S~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANG---RVVIYDFDTFR--IARMLSAHVRPI----TSLCW-------SRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCC---cEEEEEccccc--hhhhhhccccce----eEEEe-------cCCCCEeeeecCCcee
Confidence 78999999999999999998 44556555433 345555665555 68888 8999999999999999
Q ss_pred EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee
Q 010748 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 301 (502)
Q Consensus 222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~ 301 (502)
.+||+..+..+..+ ....+|+...|+|...+.+++.-.+..-.+-++..++.
T Consensus 90 ~lwDl~~gs~l~ri----------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h 141 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRI----------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH 141 (405)
T ss_pred EEEeccCCCceeEE----------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence 99999876544332 24688999999998777777776666666666665322
Q ss_pred eEeecc----CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec-CCeeEEEeCCCCCCEEEEEeCCCc
Q 010748 302 NLTLEH----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 302 ~~~~~~----h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~~~~dg~ 376 (502)
...-.. .+....+..|.+.| .++++|...|.+.+++..+.+++....... ..|..+.++..+. +|++-+.|..
T Consensus 142 ~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRv 219 (405)
T KOG1273|consen 142 SVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRV 219 (405)
T ss_pred eeccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCce
Confidence 111110 11222334688888 999999999999999999988776444433 6788899988765 8999999999
Q ss_pred EEEEECCCCCCCCCCCCCccceEEe--ccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCeeEEEEecCCC-CcE
Q 010748 377 IKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKA-GAV 452 (502)
Q Consensus 377 v~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~-~~v 452 (502)
|+.|+++............+.+.++ .....-.+++|+.+| .+++.++ .-..++||.-..+. ++..+.+.. ...
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~kgE~l 296 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGS--LVKILHGTKGEEL 296 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcc--eeeeecCCchhhe
Confidence 9999988432110000011111111 112344678899988 5555554 45679999999888 566666665 457
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
..+.|+|-.+ ++++- ..|.++||....-
T Consensus 297 ~DV~whp~rp-~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 297 LDVNWHPVRP-IIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeccccccee-eeeec-cCCceEEEEeecc
Confidence 7899999988 36654 7899999987553
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=159.38 Aligned_cols=247 Identities=17% Similarity=0.335 Sum_probs=180.8
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec-------cCC
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-------KEF 278 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-------~~~ 278 (502)
+|||..|++-+.|..+++|++......... ++ ...-+...... ......|...+|- |+
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~---~~----------~~~~~~~~~~r-~~eg~tvydy~wYs~M~s~qP~- 122 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKA---DG----------PLNFSKHLSYR-YQEGETVYDYCWYSRMKSDQPS- 122 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCC---CC----------ccccccceeEE-eccCCEEEEEEeeeccccCCCc-
Confidence 899999999999999999998632111000 00 00000111111 1234678888886 44
Q ss_pred CcEEEEEecCCcEEEEeCCCCeeeEeecc--CCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEec-CCCCCcc------
Q 010748 279 RNILASASADKQVKIWDVAAGKCNLTLEH--HTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDA-RISTHSG------ 346 (502)
Q Consensus 279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~------ 346 (502)
.+++|+.+.+.-|++||.-+|+...++.+ |.. ...+|+|+|+| ..|++ +..+.|++||+ |.+..-.
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhh
Confidence 57999999999999999999998877754 333 44689999999 55654 56789999999 4333211
Q ss_pred -ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748 347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 347 -~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
-.++..+-+.|++|+|.....+++|+-...+-||.-... .+++.+.+|.+.|+.+.|.++| +.|.+|+.
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~edG-n~lfsGaR 270 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCEDG-NKLFSGAR 270 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEeccCc-Ceeccccc
Confidence 122346678999999998889999998888888877665 7889999999999999999999 67777665
Q ss_pred -CCcEEEEECCCCCeeEEEEecCCCC-cEEEE--EEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 426 -DKMVKLWDLSNNQPSCIASRNPKAG-AVFSV--AFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 426 -dg~i~vwd~~~~~~~~~~~~~~~~~-~v~~~--~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+-.|.+||++..+. .+..+..|.+ .-..| ...|+++ +|++|+.+|.|++||+.+
T Consensus 271 k~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 77899999998653 4566666655 33344 4468898 599999999999999987
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=8.6e-20 Score=175.48 Aligned_cols=274 Identities=18% Similarity=0.344 Sum_probs=205.0
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg 219 (502)
.|.+++|.|+|..|+.+..+ ++++|+...+.. ..|..|.+.+ .|++| +.+|+++|+|+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~------rlliyD~ndG~llqtLKgHKDtV-----ycVAy-------s~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS------RLLVYDTSDGTLLQPLKGHKDTV-----YCVAY-------AKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEecCC------EEEEEeCCCcccccccccccceE-----EEEEE-------ccCCceeccCCCce
Confidence 79999999999988777644 788888776633 3445666655 79999 79999999999999
Q ss_pred cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~ 299 (502)
.|.||+-..... ....|.+.|.|+.|+|- .+.|+||+-. ..-+|.....
T Consensus 76 ~VI~W~~klEG~-----------------------------LkYSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK 124 (1081)
T KOG1538|consen 76 SVIIWTSKLEGI-----------------------------LKYSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQK 124 (1081)
T ss_pred eEEEecccccce-----------------------------eeeccCCeeeEeecCch-HHHhhhcchh-hccccChhhh
Confidence 999998642111 11269999999999998 6789999874 5788986543
Q ss_pred eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce--EeecCCeeEEEeCCCCC----CEEEEEeC
Q 010748 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAE----HSFVVSLE 373 (502)
Q Consensus 300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~~----~~~~~~~~ 373 (502)
. +...+ ....|.+++|..+| ++|+.|-.+|+|.+-+-......... .+..++|.+++|+|... ..+++...
T Consensus 125 ~-V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 125 S-VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW 201 (1081)
T ss_pred h-HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence 3 22222 35678999999999 99999999999999865443332211 13567899999999632 25666667
Q ss_pred CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 453 (502)
Q Consensus 374 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 453 (502)
..++.+|.+... .+-.-..-.-...|+.+.++| .+++.|+.|+.+++|--.. ..+-+.......|+
T Consensus 202 ~qTLSFy~LsG~----------~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~G---vrLGTvg~~D~WIW 267 (1081)
T KOG1538|consen 202 GQTLSFYQLSGK----------QIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDG---VRLGTVGEQDSWIW 267 (1081)
T ss_pred cceeEEEEecce----------eecccccCCCCchhheeccCC-cEEEEccCCCceEEEeecC---eEEeeccccceeEE
Confidence 777777776532 222222334456789999998 8999999999999996443 24555555678899
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 454 SVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 454 ~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+++..|++++ ++.|..||+|.-|++..
T Consensus 268 tV~~~PNsQ~-v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 268 TVQAKPNSQY-VVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEccCCce-EEEEEccCeeehhhhHH
Confidence 9999999996 88899999999999854
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.4e-20 Score=175.62 Aligned_cols=259 Identities=18% Similarity=0.222 Sum_probs=190.2
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|++....|++++.+|+|.+|++... .....+...+...+.+|.++|.|+++.+. +..+++
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~-------------------~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ys 361 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKA-------------------KKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYS 361 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhccc-------------------CCccccceeeeEEEecccCceEEEEecCC-ceEEEe
Confidence 3677889999999999999999420 01233446677888999999999999998 669999
Q ss_pred EecCCcEEEEeCCCC----------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecC
Q 010748 285 ASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA 353 (502)
Q Consensus 285 gs~dg~v~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~ 353 (502)
|+.||+|+.|++... .....+.||++.|+.+++|+.. ..|++++.||++++|............ ...+
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g 440 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG 440 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccccC
Confidence 999999999976421 2345678999999999999988 789999999999999988766522111 1223
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-----cCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----HDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
-..++.+-.......++...-+.-.++++..... ..++...+ ....+..+.++|.. .+.+++..|+.
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-------~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~ 512 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-------LLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRS 512 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhh-------eeeccccCCCcccccCccceEEecCCC-CeeEecccCCc
Confidence 3445555433222333333333333444433211 11111111 12346778888987 89999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
|+++|..++. .+.....|...++++++.|+|.| |++|+.||.+++|.+....++.....++..+
T Consensus 513 Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~~~~es~~~r~~~ 576 (577)
T KOG0642|consen 513 IRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKTCVLESTAHRKKP 576 (577)
T ss_pred eecccccccc--cchheeeccceecceeecCCCce-EEeecCCceeehhhccchheeeccccccccC
Confidence 9999999998 57777788899999999999996 9999999999999999888887777776544
No 164
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=7.2e-19 Score=170.18 Aligned_cols=332 Identities=17% Similarity=0.308 Sum_probs=228.8
Q ss_pred eeccCCCCCCcccCC-CCCCccccccccccCCCc---eEEEEEecCCcceeEEEEEecCCCCC-----------CCeeee
Q 010748 120 LYYASNQMDPYLKDK-DDEDSEDLEDMTINPNDA---VIVCARNEDDVSHLEVYILEESDGGD-----------PNLYVH 184 (502)
Q Consensus 120 ~~~~~~~~d~~~~~~-~~~~~~~v~~~~~~p~~~---~l~~~~~~~~~~~l~v~~~~~~~~~~-----------~~l~~~ 184 (502)
-+|... .|.+.... -..|.+.|.++.|...+. +||+++.+. +++||.+....... ++.++.
T Consensus 172 ~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~---yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f 247 (764)
T KOG1063|consen 172 DLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDR---YIRIWRIVLGDDEDSNEREDSLTTLSNLPVF 247 (764)
T ss_pred EEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCce---EEEEEEEEecCCccccccccccccccCCcee
Confidence 344444 44444332 367999999999986644 555555554 88999876555211 000000
Q ss_pred ----e-c------ccc---CCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcc-eecCCcchhhhhhc
Q 010748 185 ----H-H------III---PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPH-VILGGIDEEKKKKK 249 (502)
Q Consensus 185 ----~-~------~~~---~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~-~~l~~~~~~~~~~~ 249 (502)
+ . ..+ ..-...+.| +|.+..|+++++|.++.||.-+....+... ..+|
T Consensus 248 ~~l~~i~~~is~eall~GHeDWV~sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG---------- 310 (764)
T KOG1063|consen 248 MILEEIQYRISFEALLMGHEDWVYSVWW-------HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG---------- 310 (764)
T ss_pred eeeeeEEEEEehhhhhcCcccceEEEEE-------ccchhhheecccCcceEEEecCCccceEEEEEEee----------
Confidence 0 0 000 011234445 788999999999999999988754333221 1111
Q ss_pred cccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEE
Q 010748 250 SKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILL 326 (502)
Q Consensus 250 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~ 326 (502)
...+......+.-|+|+ ++.+++-+..|..++|-.... .....+.+|.+.|+.+.|+|.| .+|+
T Consensus 311 -----------e~gg~a~GF~g~lw~~n-~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflL 377 (764)
T KOG1063|consen 311 -----------EVGGSAGGFWGGLWSPN-SNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLL 377 (764)
T ss_pred -----------cccccccceeeEEEcCC-CCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEE
Confidence 12245567889999999 578888899999999983321 3444568999999999999999 8999
Q ss_pred EEeCCCcEEEEecCCCCC----ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCC---------------
Q 010748 327 SGSFDRSVVMKDARISTH----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS--------------- 387 (502)
Q Consensus 327 s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~--------------- 387 (502)
+.+.|.+-|+|-.-..+. ......|...++|+++-+. +..|++|.+...+|+|+....-.
T Consensus 378 svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~ 456 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSD 456 (764)
T ss_pred EeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCch
Confidence 999999999987652221 1223357778999999874 55799999999999998642100
Q ss_pred ------------------CC-C------------------------CC---------CCccceEEeccCCCeeEEEEcCC
Q 010748 388 ------------------DP-D------------------------ST---------SQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 388 ------------------~~-~------------------------~~---------~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
.+ . ++ ...-+..+.+|...|.+++.+|+
T Consensus 457 ~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~ 536 (764)
T KOG1063|consen 457 ELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT 536 (764)
T ss_pred hcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC
Confidence 00 0 00 00112345678899999999999
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748 416 VPNLLATGSTDK-----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 416 ~~~~l~t~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
+ +++|+++... .|++|+..+.. .+..+.+|.-.|+.++||||++| |++.+.|.++.+|...........|.
T Consensus 537 g-nliASaCKS~~~ehAvI~lw~t~~W~--~~~~L~~HsLTVT~l~FSpdg~~-LLsvsRDRt~sl~~~~~~~~~e~~fa 612 (764)
T KOG1063|consen 537 G-NLIASACKSSLKEHAVIRLWNTANWL--QVQELEGHSLTVTRLAFSPDGRY-LLSVSRDRTVSLYEVQEDIKDEFRFA 612 (764)
T ss_pred C-CEEeehhhhCCccceEEEEEeccchh--hhheecccceEEEEEEECCCCcE-EEEeecCceEEeeeeecccchhhhhc
Confidence 8 9999988654 38999988876 45678899999999999999997 77789999999999866655444433
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=1.3e-18 Score=151.81 Aligned_cols=269 Identities=17% Similarity=0.253 Sum_probs=193.6
Q ss_pred CCccccccccccCCCceEEEEEecCCc-----ceeEEEEEecCCCCCC--Ce--eeeeccccCCCcceeeeecCCCCCCC
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDV-----SHLEVYILEESDGGDP--NL--YVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~-----~~l~v~~~~~~~~~~~--~l--~~~~~~~~~~~~~~~~~~~~~~~~s~ 207 (502)
.+.++|..++-+|.++.|++....... ...-||.+.+..+..- .+ ..+-+...-+...|+.| .|
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew-------~P 133 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW-------EP 133 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE-------cC
Confidence 467899999999998887776654221 2334555544333100 01 11111111223478998 58
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEEEe
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs 286 (502)
++..||+-. +..|.+|+++........ .......+|....++-+|+|. .++.+++.
T Consensus 134 ns~klasm~-dn~i~l~~l~ess~~vae---------------------v~ss~s~e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 134 NSDKLASMD-DNNIVLWSLDESSKIVAE---------------------VLSSESAEMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred CCCeeEEec-cCceEEEEcccCcchhee---------------------ecccccccccceecccccCCCCccceEEEe-
Confidence 888888776 899999999864432110 001111236777888999993 45666654
Q ss_pred cCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCC
Q 010748 287 ADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHA 364 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~ 364 (502)
.|+++..||+++.++...+ ..|...|..+.|+|+...+|++|+.||.|++||+|..+.+. .+..|...|.+|.|+|..
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 4689999999998887777 57888999999999998999999999999999999877654 445788899999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCC--------------------CCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDP--------------------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 424 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~--------------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s 424 (502)
..++++|+.|..|.+|....-...+ .+.....+.++..|...|.+++|+...|-++|+-+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 8899999999999999876543200 00112234567789999999999998899999999
Q ss_pred CCCcEEEEECC
Q 010748 425 TDKMVKLWDLS 435 (502)
Q Consensus 425 ~dg~i~vwd~~ 435 (502)
.||.+.|=.+.
T Consensus 351 YDGRviIs~V~ 361 (370)
T KOG1007|consen 351 YDGRVIISSVP 361 (370)
T ss_pred cCceEEeecCC
Confidence 99999886654
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3e-19 Score=170.05 Aligned_cols=230 Identities=20% Similarity=0.291 Sum_probs=179.5
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.|.|.+||+|+.||+|+||.+.++.++.... -.+.|.|++|+|....-++++
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------------------~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------------------FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEe----------------------------ecceeEEEEecCCCCceeEEE
Confidence 6789999999999999999999988776432 235799999999865544444
Q ss_pred ecCCcEEEEeCCCC-------------------------------------eeeEeeccCCCCeEEEEEcCCCCcEEEEE
Q 010748 286 SADKQVKIWDVAAG-------------------------------------KCNLTLEHHTDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 286 s~dg~v~vwd~~~~-------------------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 328 (502)
+....+.|-+..-| +-++..-.|...|..|.||..| .+|++.
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV 539 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV 539 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence 44444555443211 0112233478899999999999 888887
Q ss_pred eCC---CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC
Q 010748 329 SFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 405 (502)
Q Consensus 329 s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~ 405 (502)
..+ ..|.|+++........+....+.|.++.|+|..+ +|++++ -..|++||+... ..+..+.....
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq---------elvKkL~tg~k 608 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ---------ELVKKLLTGSK 608 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH---------HHHHHHhcCCe
Confidence 653 5789999987776655556788899999999877 455554 467999999875 66777777888
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
.|.+++++|.| .-|+.|+.|+.+..||+.-+. .....+..|...+++++|++.-+ ||++|+.||++.|+-
T Consensus 609 wiS~msihp~G-Dnli~gs~d~k~~WfDldlss-kPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 609 WISSMSIHPNG-DNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred eeeeeeecCCC-CeEEEecCCCeeEEEEcccCc-chhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence 99999999998 678889999999999997654 25667788999999999999999 799999999998874
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.2e-18 Score=158.82 Aligned_cols=307 Identities=20% Similarity=0.322 Sum_probs=212.4
Q ss_pred ccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCCCCC--Ce-----eeeeccccCCCcceeeeecCCCCCCCCCC
Q 010748 139 SEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGGDP--NL-----YVHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 139 ~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~~~--~l-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 210 (502)
.+++..+.|++... .|++|+.+. .+++|..+....... .+ ..+|+..+ .++.| +|+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~---~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aV----N~vRf-------~p~ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDK---DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAV----NVVRF-------SPDGE 78 (434)
T ss_pred CCceEEEEeccCcccceecccCcc---ceeeeeeeecCCCCCceeEEEeecccCCccee----EEEEE-------cCCcC
Confidence 35788999998877 999999886 569998876655331 11 12332222 45555 89999
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
+||+|+.+|.|.+|.......... .. . ....+........+.+|...|..++|+|+ .+++++|+.|.+
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~----d~--e-----~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns 146 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDA----DT--E-----ADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNS 146 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccc----cc--h-----hhhCccceEEEEEecccccchhhhhccCC-Cceeeeeeccce
Confidence 999999999999998763111100 00 0 00111223445566789999999999999 679999999999
Q ss_pred EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-------------------Ee-
Q 010748 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------------------WA- 350 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------------------~~- 350 (502)
+++||+..|+....+..|...|+.++|.|.+ +++++-+.|...+.+.+...+..... .-
T Consensus 147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfh 225 (434)
T KOG1009|consen 147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFH 225 (434)
T ss_pred EEEEEeccceeEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeee
Confidence 9999999999999999999999999999999 89999999987777666543221100 00
Q ss_pred ---ecCCeeEEEeCCCCCCEEEEEeC----CC-----cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC---
Q 010748 351 ---VAADVESLAWDPHAEHSFVVSLE----DG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--- 415 (502)
Q Consensus 351 ---~~~~v~~v~~~~~~~~~~~~~~~----dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--- 415 (502)
...-...++|+|+|. ++++... .+ ..++|+-... .+|...+.....+...+.|+|-
T Consensus 226 DeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l--------~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 226 DETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDL--------KRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred cCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeEeeccccc--------cCceeecCCCCcceEEEEeeeeEEE
Confidence 122356678999876 5655421 22 2344544333 3666667766677766666651
Q ss_pred --------------CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 416 --------------VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 416 --------------~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
.+..+|.++ .+.|.|||..+..|..+ .-.-|-..|+.++|+++|.+ |+..+.||...+--+..
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~-v~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAV-VDNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEP 373 (434)
T ss_pred eccccccccccccccceEEEEee-cceEEEeccccccceEE-EeeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcc
Confidence 012344444 45699999998876444 33557789999999999995 77789999887777766
Q ss_pred Ccc
Q 010748 482 DAG 484 (502)
Q Consensus 482 ~~~ 484 (502)
.++
T Consensus 374 ~el 376 (434)
T KOG1009|consen 374 WEL 376 (434)
T ss_pred hhc
Confidence 554
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.6e-18 Score=173.27 Aligned_cols=304 Identities=18% Similarity=0.276 Sum_probs=204.3
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeec-cccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 220 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~ 220 (502)
-..+.|+|-...++++.... .+.||.|+... .+...+. ..-......++.++ ..+..++++|+.||.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~---~i~vwd~e~~~----~l~~F~n~~~~~t~Vs~l~liN-----e~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRE---RIRVWDWEKGR----LLNGFDNGAFPDTRVSDLELIN-----EQDDALLLTASSDGV 1134 (1387)
T ss_pred CceeeecCCCceeEEcCCcc---eEEEEecccCc----eeccccCCCCCCCccceeeeec-----ccchhheeeeccCce
Confidence 45678899988888886333 67788877665 2333332 22223334444442 246789999999999
Q ss_pred EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748 221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300 (502)
Q Consensus 221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~ 300 (502)
|+||+-.-..-..+..+.+- ..+.....+-.+.=.-+.|....++ |++++.-..|+|||+...+
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw---------------~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAW---------------SSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred EEEecccccccCCceeEEee---------------ccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccce
Confidence 99997432110011000000 0000011111122245679888664 4455556899999999888
Q ss_pred eeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---ccceEeecCC--eeEEEeCCCCCCEEEEEeCC
Q 010748 301 CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAAD--VESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 301 ~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~--v~~v~~~~~~~~~~~~~~~d 374 (502)
++..+. +....|+++.-+-..++++++|..||.|++||.|.... +.....|... |..+.+.+.|-..+++|+.+
T Consensus 1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 887774 34557788876655568999999999999999997654 2223355555 99999999776679999999
Q ss_pred CcEEEEECCCCCCCCCCCCCccceEEeccC--C-CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe----cC
Q 010748 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--K-AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR----NP 447 (502)
Q Consensus 375 g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~-~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~----~~ 447 (502)
|.|++||+|... ......+..|- + .++++..+++. ..+|+|+. +.|+||++...+...+... ..
T Consensus 1279 G~I~~~DlR~~~-------~e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSS-------KETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQ 1349 (1387)
T ss_pred CeEEEEecccCc-------ccccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccC
Confidence 999999999852 23344444443 3 48999999987 88999988 9999999976553222211 12
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
..+.+.|++|+|-.. +||+|..|.+|.||......
T Consensus 1350 ~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCCCcceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence 346789999999987 69999999999999876543
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=2.4e-18 Score=156.27 Aligned_cols=231 Identities=19% Similarity=0.294 Sum_probs=174.1
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
+.+.|.++ +.+.||+|+.|.+|.||.+.......+ ...+...+.+|...|--++
T Consensus 85 LDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~--------------------ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 85 LDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRD--------------------LTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred cccccCcc------CCceeecCCCCceEEEEECCCcccccC--------------------cccceEEEeecceeEEEEe
Confidence 67888643 788999999999999999964332221 1344556779999999999
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 353 (502)
|+|...+.|+|++.|.+|.+|++.+|..+.++. |.+.|+++.|+.+| .+|++++.|..|+|||.|+++.......|.+
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccC
Confidence 999999999999999999999999999998888 99999999999999 8999999999999999999987765545543
Q ss_pred -CeeEEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccc-eEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748 354 -DVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 354 -~v~~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
....+.|-.++. ++.+|. .+..+.+||..+.. .++ ..-...+..|.---|.++..-+.++|-.|+.
T Consensus 217 ~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~--------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 217 AKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLE--------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred CCcceeEEeccCc-eeeeccccccccceeccCccccc--------CcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence 456677777665 555553 56789999988773 332 2222334556666788887444455666999
Q ss_pred EEEEECCCCCeeE--EEEecCCCCcEEEEEEcCCCC
Q 010748 429 VKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 429 i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~spd~~ 462 (502)
||.|.+....|.. +.++. ...+-..+.|-|...
T Consensus 288 IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 288 IRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKRG 322 (472)
T ss_pred eEEEEecCCCceeEEecccc-cCCcccccccccccc
Confidence 9999998876421 22222 234556677777653
No 170
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=153.21 Aligned_cols=206 Identities=19% Similarity=0.243 Sum_probs=160.0
Q ss_pred ccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 010748 260 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334 (502)
Q Consensus 260 ~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i 334 (502)
..+.+|...|++++|+.+ +.+||+++.|++|+||+++.- ++++.- -.-+..+.+.|.|+-..++++.-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEE
Confidence 457899999999999999 569999999999999998753 222211 1123567899999997777777778899
Q ss_pred EEEecCCCCC---c--cce-------EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec
Q 010748 335 VMKDARISTH---S--GFK-------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA 402 (502)
Q Consensus 335 ~iwd~~~~~~---~--~~~-------~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 402 (502)
++|.+...+- . ... ..|.-.+..+-... +..++++++.|..|.+|+++ + +.+..+..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G---------q~L~~idt 226 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G---------QLLQSIDT 226 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C---------ceeeeecc
Confidence 9998754321 1 111 12334455555554 45589999999999999999 3 66777777
Q ss_pred cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC------CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v 476 (502)
....-+..+.||+| ++|++++.---|+||.+--. ....++.+.+|...|..++|+|+.. .+++.+.||+++|
T Consensus 227 nq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wri 304 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRI 304 (420)
T ss_pred ccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEE
Confidence 77777888999998 99999999888999986322 2345788899999999999999998 5999999999999
Q ss_pred EECC
Q 010748 477 WDTL 480 (502)
Q Consensus 477 wd~~ 480 (502)
||+.
T Consensus 305 wdtd 308 (420)
T KOG2096|consen 305 WDTD 308 (420)
T ss_pred eecc
Confidence 9984
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.6e-18 Score=158.99 Aligned_cols=238 Identities=13% Similarity=0.193 Sum_probs=187.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|...+|++++.|+.++||.++.. .......+.-...+|.+..|.|+|...++++
T Consensus 222 Hp~~plllvaG~d~~lrifqvDGk-------------------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 222 HPTAPLLLVAGLDGTLRIFQVDGK-------------------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred cCCCceEEEecCCCcEEEEEecCc-------------------------cChhheeeeeccCccceeeecCCCceEEEec
Confidence 788999999999999999999741 1122223333567899999999976699999
Q ss_pred ecCCcEEEEeCCCCeeeE--eeccCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 286 SADKQVKIWDVAAGKCNL--TLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
+....++.||+.+.+... .+.++. ..+.....++++ ++|+..+..|.|.+....+...+. .+...+.|..++|+.
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~-s~KieG~v~~~~fsS 354 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT-SFKIEGVVSDFTFSS 354 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh-eeeeccEEeeEEEec
Confidence 999999999999886533 333443 356677889999 899999999999999998887665 677889999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC----C
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN----N 437 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~----~ 437 (502)
++. .+++++.+|.|.+||++.. .++..+.... -.-++++.++++ .+||+|+..|.|.|||..+ .
T Consensus 355 dsk-~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 355 DSK-ELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred CCc-EEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccC
Confidence 875 7888888999999999986 4555554321 134667778887 8999999999999999654 4
Q ss_pred CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCC
Q 010748 438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSD 482 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~--dg~i~vwd~~~~ 482 (502)
.|.++..+..-...|++++|+|+.+ +||.++. +..+++-.+.+.
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce
Confidence 5567777777788999999999998 6776665 457888777654
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=3.3e-18 Score=160.94 Aligned_cols=280 Identities=16% Similarity=0.252 Sum_probs=191.7
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
-|.+-|.++.++.+...+.++... .+..+............ .+-..+|..+--.+...+.......|+.++
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh------~~~~~~~~~~~s~~~~~---~p~df~pt~~h~~~rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDH------QIFKWSDVSRDSVEVAK---LPDDFVPTDMHLGGRSSGGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeecccccceEEEeccCc------eEEEeecccchhhhhhh---CCcccCCccccccccccCCCCCcceEEEEc
Confidence 356677788888888777766433 33333322211101111 011112222211111111123456788999
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
.||.+.|.+-. .+.......|.++|.|-.|+|+ +.-|++++.||.|++|.
T Consensus 83 ~DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWS- 132 (737)
T KOG1524|consen 83 NDGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWS- 132 (737)
T ss_pred CCceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEe-
Confidence 99999887632 2333345589999999999999 45888999999999998
Q ss_pred CCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~ 376 (502)
++|-...++.....+|.|++|.|+..+.+++.+ +.+.+=-+.....+..-..|.+-|.++.|++.+. ++++|++|-.
T Consensus 133 rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~k 209 (737)
T KOG1524|consen 133 RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFR 209 (737)
T ss_pred ccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCcee
Confidence 667666666666789999999999977777654 5666666665555543447888899999999754 8999999999
Q ss_pred EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEE
Q 010748 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
.++||.. +.+++....|..+|++++|+|+ ..++.+|.. ++| --.+..|.|+.++
T Consensus 210 fKvWD~~----------G~~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R-------------~~~p~~GSifnls 263 (737)
T KOG1524|consen 210 FKIWDAQ----------GANLFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR-------------FSSPRVGSIFNLS 263 (737)
T ss_pred EEeeccc----------CcccccCChhccceeeeeeccc--cceeeeeee-eee-------------ecCCCccceEEEE
Confidence 9999987 3678888999999999999996 455555432 233 1234568899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 457 FSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 457 ~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
||+||.. +++|...|.+.+=-+-....+
T Consensus 264 WS~DGTQ-~a~gt~~G~v~~A~~ieq~l~ 291 (737)
T KOG1524|consen 264 WSADGTQ-ATCGTSTGQLIVAYAIEQQLV 291 (737)
T ss_pred EcCCCce-eeccccCceEEEeeeehhhhh
Confidence 9999995 888888887766444333333
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1.2e-18 Score=166.89 Aligned_cols=260 Identities=15% Similarity=0.229 Sum_probs=191.5
Q ss_pred CCCCCEEEE--ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748 206 REKGNFMAV--GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 206 s~~~~~la~--g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
..+..++|+ .+..|.|-||+++....+..- .+-.. -....|+.+.|.|-....||
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDg---------------------v~p~l--~Ngt~vtDl~WdPFD~~rLA 644 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDG---------------------VMPGL--FNGTLVTDLHWDPFDDERLA 644 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcc---------------------ccccc--ccCceeeecccCCCChHHee
Confidence 345666665 455699999999753322110 00011 23467999999998888999
Q ss_pred EEecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCee
Q 010748 284 SASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE 356 (502)
Q Consensus 284 sgs~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 356 (502)
.++.||.|++|.+..+ .+-..+..|..+|+++.|||-...+|+++++|-+|++||+++......+.+|...|.
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence 9999999999998754 345677889999999999999889999999999999999999988888889999999
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEEeCCC----cEEE
Q 010748 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDK----MVKL 431 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg----~i~v 431 (502)
.++|+|+|. .+++.+.||+|++|..++. ..+++.-.+.. ..-..|.|.-+| +++++.+.|. +|.+
T Consensus 725 ~~AWSpdGr-~~AtVcKDg~~rVy~Prs~--------e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 725 GIAWSPDGR-RIATVCKDGTLRVYEPRSR--------EQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred EEEECCCCc-ceeeeecCceEEEeCCCCC--------CCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhh
Confidence 999999876 7999999999999999987 35555444332 233567788887 7777776654 5889
Q ss_pred EECCCCCeeEEEEecCCCC-cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCCCC
Q 010748 432 WDLSNNQPSCIASRNPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKP 498 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~-~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 498 (502)
||..+-....+.+...... .+.--.+.+|...+|++|-.|..|.+|.+.-.....-.+.++..+...
T Consensus 795 Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~h 862 (1012)
T KOG1445|consen 795 YDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGH 862 (1012)
T ss_pred hhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcc
Confidence 9887644223332221111 122234567777789999999999999998777665555555554443
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.2e-16 Score=159.64 Aligned_cols=297 Identities=24% Similarity=0.432 Sum_probs=210.6
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC-EEEE
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~la~ 214 (502)
..+...+..+.+.+.+..++.++.++ .+.+|.+.........+..++...+ ..+.+ . ++++. +++.
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~-~~~~~~~~~~ 128 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDG---TIKLWDLDNGEKLIKSLEGLHDSSV----SKLAL-----S-SPDGNSILLA 128 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCC---cEEEEEcCCCceeEEEEeccCCCce----eeEEE-----E-CCCcceEEec
Confidence 34778899999999999999998665 4566665544310111112121011 11111 1 24555 5555
Q ss_pred e-cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec-CCcEE
Q 010748 215 G-SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVK 292 (502)
Q Consensus 215 g-~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-dg~v~ 292 (502)
. ..++.+.+|++... ......+..|...|.+++|+|++. .+++++. ++.++
T Consensus 129 ~~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 181 (466)
T COG2319 129 SSSLDGTVKLWDLSTP--------------------------GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIK 181 (466)
T ss_pred cCCCCccEEEEEecCC--------------------------CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceE
Confidence 4 44899999998740 122334557999999999999955 7777775 99999
Q ss_pred EEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeCCCCCCEEEEE
Q 010748 293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVS 371 (502)
Q Consensus 293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~ 371 (502)
+|++..+..+..+.+|...|.+++|+|++..++++++.|+.|++||.+...... ....+.... ...|+|++ .+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 259 (466)
T COG2319 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASG 259 (466)
T ss_pred EEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEe
Confidence 999999899999999999999999999884355566999999999888554444 233444443 33899987 578899
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCc
Q 010748 372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451 (502)
Q Consensus 372 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 451 (502)
+.++.+++|+++... ..+..+..|...+.++.|+|.+ ..+++++.|+.+++|++.............|...
T Consensus 260 ~~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (466)
T COG2319 260 SSDGTIRLWDLRSSS--------SLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330 (466)
T ss_pred cCCCcEEEeeecCCC--------cEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc
Confidence 999999999999762 2234446789999999999976 6677788898899999888764333333467778
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 452 v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
+..+.|.+++..++.++..++.+.+|++....
T Consensus 331 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred eEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 99999943324334443678899999998876
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.1e-17 Score=140.04 Aligned_cols=243 Identities=17% Similarity=0.232 Sum_probs=173.4
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|.+++|++|+.+|.|.+..+....... .+.+.+.+...+++|..+|+.++|+.+ +|++|
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~s-----------------a~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~ 78 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGS-----------------AEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSG 78 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccc-----------------cCCCCCcceeeccccCCCeeeeeeehh---heeec
Confidence 7899999999999999999987543221 122234445556899999999999954 67777
Q ss_pred ecCCcEEEEeCCCC------eeeEee--ccCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748 286 SADKQVKIWDVAAG------KCNLTL--EHHT-----DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 286 s~dg~v~vwd~~~~------~~~~~~--~~h~-----~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 352 (502)
+. |.|+-|..+.. +.+... ..|. -.|++|...|..+. ++.++.|+.++-||+.+++......+|.
T Consensus 79 gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 79 GD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred cC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 65 99999876532 111111 1222 36889999999844 5555589999999999999988888999
Q ss_pred CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
.-+.++.-...++ .+++|++||++++||+++.+........+....+..| ...|-+++.+. .+|++|+. ..+.+
T Consensus 157 DYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGgG-p~lsl 231 (325)
T KOG0649|consen 157 DYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGGG-PKLSL 231 (325)
T ss_pred ceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecCC-CceeE
Confidence 9999998844333 6999999999999999998543222211222222223 24567777663 67777764 46999
Q ss_pred EECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
|.++..++.+++.+++| +..+.|..+ .++++|..+.|.-|.+..
T Consensus 232 whLrsse~t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 232 WHLRSSESTCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EeccCCCceEEEecccc---eeEeeeecc---eEEEeccccceeeeeecc
Confidence 99999998888887754 777788776 355677777788887743
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.2e-18 Score=161.46 Aligned_cols=230 Identities=23% Similarity=0.320 Sum_probs=172.8
Q ss_pred ccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEE
Q 010748 260 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMK 337 (502)
Q Consensus 260 ~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~s~dg~i~iw 337 (502)
..+.||++.|+||.|+.+ +.+|+|||.|-.+.|||.-..+.++.+ .+|...|.|+.|-|.. ..++++|..|..|++|
T Consensus 44 ~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 356799999999999999 569999999999999999988888888 6899999999999854 3688999999999999
Q ss_pred ecCCCC----------CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCC-CCccceEEeccCCC
Q 010748 338 DARIST----------HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST-SQQSSFTLHAHDKA 406 (502)
Q Consensus 338 d~~~~~----------~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~h~~~ 406 (502)
|+...+ .......|...|..++-.|.+++.|.++++||+|+-||+|......... ....+..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 998522 1222235677888999999999999999999999999999863211110 01111122222245
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------------eEEEEe-cCCC-----------CcEEEEEEc
Q 010748 407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------------SCIASR-NPKA-----------GAVFSVAFS 458 (502)
Q Consensus 407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------------~~~~~~-~~~~-----------~~v~~~~~s 458 (502)
..|+.++|..+.+|+.|+.|-..++||.+...+ .++..+ .+|. ..++-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678999999999999999999999999543110 012111 1221 125678899
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748 459 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 459 pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
|+|.-+|++-+.+ .|+++|+..++.....+..
T Consensus 283 pNGtElLvs~~gE-hVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 283 PNGTELLVSWGGE-HVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred CCCcEEEEeeCCe-EEEEEeecCCCCceeecCc
Confidence 9998777765554 7999999998887776655
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1e-17 Score=149.68 Aligned_cols=199 Identities=17% Similarity=0.255 Sum_probs=157.7
Q ss_pred cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEecCCCCCccce-Eee--cCCe
Q 010748 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-WAV--AADV 355 (502)
Q Consensus 280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~--~~~v 355 (502)
+.+|++...|+|++||..+++.+..|+++...+..+.|... +++.+.+++.||+|++||+|........ +.. +.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57888888999999999999999999999999999999874 6689999999999999999987655432 222 2356
Q ss_pred eEEEeCCCCCCEEEEEe----CCCcEEEEECCCCCCCCCCCCCccceE-EeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748 356 ESLAWDPHAEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430 (502)
Q Consensus 356 ~~v~~~~~~~~~~~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~ 430 (502)
.|++.+-. .+++++|+ .+-.|.+||+|... +++.. ...|..-|++++|+|..+++|++||.||.|.
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~q--------q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQ--------QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEecccc--------chhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 67766543 34677774 46689999999873 43333 4679999999999999999999999999999
Q ss_pred EEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 431 LWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 431 vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
|||+..... -.+.....+...|.++.|..++--.|.+-+..++..+|++..+.+...
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 999976421 123333456778999999998833477788899999999999886543
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.8e-18 Score=161.86 Aligned_cols=270 Identities=19% Similarity=0.299 Sum_probs=188.8
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCCeeeeec-cccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
.|.+.|.++.|+|....|++|+.++ .|++|.+...... ...+..++. ....+..+|+.. ++++..+.+
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~---~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-------~~n~~~~ys 361 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDG---TLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-------PSNGEHCYS 361 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEecccc---chhhhhhcccCCccccceeeeEEEecccCceEEEEe-------cCCceEEEe
Confidence 4678899999999999999999886 7899998321110 001111111 111233377765 688999999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
|+-||+|+.|++... ..|. ...........+.||++.|+.+++++. ...|++|+.||+|++|
T Consensus 362 gg~Dg~I~~w~~p~n--~dp~---------------ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w 423 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPN--QDPD---------------DSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLW 423 (577)
T ss_pred eccCceeeeeccCCC--CCcc---------------cccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEee
Confidence 999999999988621 1111 111223445577899999999999998 6789999999999999
Q ss_pred eCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-------eecCCeeEEEeCCCCC
Q 010748 295 DVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAE 365 (502)
Q Consensus 295 d~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~ 365 (502)
+.....+ .+|.. ..+..+++.+-.......++...-+.-.++++........+. .....+..+.++|..+
T Consensus 424 ~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 424 EPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred ccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 9876655 44422 223345566654443344444444444444444333222111 1124578889999775
Q ss_pred CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010748 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 366 ~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
+.+++..++.|+++|..++ .++....+|...++++++.|+| -+|++++.|+.+++|.+.... ++...
T Consensus 503 -~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~--~~~es 569 (577)
T KOG0642|consen 503 -ITFTAHEDRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT--CVLES 569 (577)
T ss_pred -eeEecccCCceeccccccc---------ccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh--eeecc
Confidence 8999999999999999997 8899999999999999999998 899999999999999987665 55554
Q ss_pred cCC
Q 010748 446 NPK 448 (502)
Q Consensus 446 ~~~ 448 (502)
..|
T Consensus 570 ~~~ 572 (577)
T KOG0642|consen 570 TAH 572 (577)
T ss_pred ccc
Confidence 444
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=7.3e-18 Score=161.51 Aligned_cols=213 Identities=18% Similarity=0.303 Sum_probs=159.4
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE
Q 010748 193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 193 ~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
.+.+.|-+| |...||+++.||.|++|.+......++. ......+..|...|++|
T Consensus 630 vtDl~WdPF------D~~rLAVa~ddg~i~lWr~~a~gl~e~~--------------------~tPe~~lt~h~eKI~sl 683 (1012)
T KOG1445|consen 630 VTDLHWDPF------DDERLAVATDDGQINLWRLTANGLPENE--------------------MTPEKILTIHGEKITSL 683 (1012)
T ss_pred eeecccCCC------ChHHeeecccCceEEEEEeccCCCCccc--------------------CCcceeeecccceEEEE
Confidence 356677544 7889999999999999999765544332 33444667899999999
Q ss_pred EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--e
Q 010748 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--A 350 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~ 350 (502)
.|+|-..++|++++.|-+|++||+.+++....+.+|++.|..++|+|+| +.+++.+.||+|++|..++........ .
T Consensus 684 RfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp 762 (1012)
T KOG1445|consen 684 RFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGKGP 762 (1012)
T ss_pred EecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCCCC
Confidence 9999988899999999999999999999999999999999999999999 999999999999999998866543211 1
Q ss_pred ecCCeeEEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccceEEeccCC-CeeEEEEcCCCCCEEEEEeCC
Q 010748 351 VAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTD 426 (502)
Q Consensus 351 ~~~~v~~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~~~~l~t~s~d 426 (502)
....-..+.|.-++..++++|. ....|.+||..+... .++.+...... .+.--.+.++.+.+++||-.|
T Consensus 763 vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-------~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 763 VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-------RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-------CcceeeeecccCccccccccCCCceEEEecCCC
Confidence 2334456778777775555553 345688898877531 33333322111 122224555665788999999
Q ss_pred CcEEEEECCCCCe
Q 010748 427 KMVKLWDLSNNQP 439 (502)
Q Consensus 427 g~i~vwd~~~~~~ 439 (502)
..|.+|.+-...+
T Consensus 836 ~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 836 RFVNMYEVIYESP 848 (1012)
T ss_pred ceEEEEEecCCCc
Confidence 9999999876654
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.7e-17 Score=147.13 Aligned_cols=294 Identities=14% Similarity=0.204 Sum_probs=210.1
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC----CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 211 (502)
-+|.+-|+++.|+.++++||+|+.+. ++.||..+...- ....+..||. .+-.+|+++ .....+
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~---~~~~W~~de~~~~k~~KPI~~~~~~H---~SNIF~L~F-------~~~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDM---HGRVWNVDELMVRKTPKPIGVMEHPH---RSNIFSLEF-------DLENRF 119 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcc---eeeeechHHHHhhcCCCCceeccCcc---ccceEEEEE-------ccCCee
Confidence 46889999999999999999998765 667776653221 1122333332 233378877 456788
Q ss_pred EEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcE
Q 010748 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 291 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v 291 (502)
|.+|+.+++|.+-|+.+.+.+... ......+.|+.+..+|. .+.|++.+.++.|
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~-------------------------~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVA-------------------------NENNNRGDVYHMDQHPT-DNTLIVVTRAKLV 173 (609)
T ss_pred EecCCCcceeEeeecccceeeeee-------------------------cccCcccceeecccCCC-CceEEEEecCceE
Confidence 999999999999999864433211 11123459999999999 7899999999999
Q ss_pred EEEeCCCCe-eeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----eecC---CeeEEEeC
Q 010748 292 KIWDVAAGK-CNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAA---DVESLAWD 361 (502)
Q Consensus 292 ~vwd~~~~~-~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~---~v~~v~~~ 361 (502)
.+||.+..+ ... .+........++.|+|..+.+|++.+..+-+.+||+|.+....... ..+. .-..+.|+
T Consensus 174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 999998654 222 2233456788999999999999999999999999999876554322 2222 23678899
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-cc-----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h-----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~ 435 (502)
|.|. .|++-.....-.+||+-+.. .+++.+. .. ...+.+++|.-+ ..+++|+.+-.|++|.+.
T Consensus 254 ~~G~-Q~msiRR~~~P~~~D~~S~R--------~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 254 PSGN-QFMSIRRGKCPLYFDFISQR--------CFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLP 322 (609)
T ss_pred CCCC-eehhhhccCCCEEeeeeccc--------ceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecC
Confidence 9876 56665555666778887641 3333333 11 123566777754 569999999999999875
Q ss_pred CCC---------------------eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 436 NNQ---------------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 436 ~~~---------------------~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
... ...+..+.+|..-+..+.|+|... +|+++|-...++||.-.
T Consensus 323 ~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 323 RANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDH 387 (609)
T ss_pred CCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc-eEeccchhhheeccccc
Confidence 310 013456778999999999999876 79999999999999754
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=143.21 Aligned_cols=290 Identities=16% Similarity=0.233 Sum_probs=190.1
Q ss_pred CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCC
Q 010748 128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 207 (502)
||+..+. .|...|+++.|..+++ |.+|...| .+.+|.+..... ...+..++. .++.|+.. -|
T Consensus 5 dP~fvLR--p~~~~v~s~~fqa~~r-L~sg~~~G---~V~~w~lqt~r~-~~~~r~~g~-------~~it~lq~----~p 66 (323)
T KOG0322|consen 5 DPFFVLR--PHSSSVTSVLFQANER-LMSGLSVG---IVKMWVLQTERD-LPLIRLFGR-------LFITNLQS----IP 66 (323)
T ss_pred CCeeEec--cccchheehhhccchh-hhcccccc---eEEEEEeecCcc-chhhhhhcc-------ceeeceee----cC
Confidence 5655554 4778999999999998 66676555 789999987654 111222332 45566543 23
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+..|.+-+.|+.+.+|++.-.... .-|.-.++++-|.+. -+...+.
T Consensus 67 -~d~l~tqgRd~~L~lw~ia~s~~i------------------------------~i~Si~~nslgFCrf---Sl~~~~k 112 (323)
T KOG0322|consen 67 -NDSLDTQGRDPLLILWTIAYSAFI------------------------------SIHSIVVNSLGFCRF---SLVKKPK 112 (323)
T ss_pred -CcchhhcCCCceEEEEEccCcceE------------------------------EEeeeeccccccccc---eeccCCC
Confidence 367888889999999999742211 124444555555443 1111111
Q ss_pred CC-c-----------EEEEeCCCCeeeEee----ccCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCc----
Q 010748 288 DK-Q-----------VKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS---- 345 (502)
Q Consensus 288 dg-~-----------v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~---- 345 (502)
.. . +.+-|......+... .+..+.+.|..|..... -+|++|..+|.+.+||+.++...
T Consensus 113 ~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~ 192 (323)
T KOG0322|consen 113 NSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP 192 (323)
T ss_pred cchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc
Confidence 10 1 222222222222211 12346777777543322 35678888999999999986322
Q ss_pred ------cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748 346 ------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 346 ------~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 419 (502)
.....|..+|.++.+.+... .=++|+.+..+..|.+...... -+....+....-.|..+.+-|++ +.
T Consensus 193 ~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gs-----lq~~~e~~lknpGv~gvrIRpD~-KI 265 (323)
T KOG0322|consen 193 QSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGS-----LQIRKEITLKNPGVSGVRIRPDG-KI 265 (323)
T ss_pred cccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCc-----ccccceEEecCCCccceEEccCC-cE
Confidence 22335788899999987533 3566677777888888654211 01222233334568899999998 99
Q ss_pred EEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
+||++.|+.||||+.++.++ +..+..|.+.|++++|+|+.. ++|+++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 99999999999999999985 555667889999999999987 7999999999999986
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.8e-17 Score=147.62 Aligned_cols=244 Identities=15% Similarity=0.193 Sum_probs=181.1
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
||.++++||+|+.|..+++|+++..- .++..+.+...-..|...|.||+|+.. ..+|++
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~--------------------~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~S 122 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELM--------------------VRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYS 122 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHH--------------------hhcCCCCceeccCccccceEEEEEccC-CeeEec
Confidence 38889999999999999999986310 001112222233457789999999987 569999
Q ss_pred EecCCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce---EeecCCeeEEE
Q 010748 285 ASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLA 359 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~ 359 (502)
|..+++|.+.|+.+.+.+..+.. ..+.|+.+..+|.. +.|++.+.++.|.+||.|........ ........++.
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 99999999999999988877752 23589999999997 99999999999999999976632222 23456688999
Q ss_pred eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
|+|..+.++++.+..+-+.+||.|... .++...... ...-.++.|+|+| +.|++.-.-..-.+||
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~--------~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQA--------RPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFD 272 (609)
T ss_pred ecCCCceeEEeccccCCCCceeecccc--------chHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEee
Confidence 999999999999999999999999873 344333221 2233678899998 5565555555667889
Q ss_pred CCCCCeeEEEEecCC------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 434 LSNNQPSCIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~------~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
+-+.+. .++.+... ...+.+++|..+.. +++|+.+-.|++|.+...
T Consensus 273 ~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 273 FISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eecccc-eeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCC
Confidence 887653 34443311 23467888887764 899999999999998543
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.8e-16 Score=155.12 Aligned_cols=308 Identities=16% Similarity=0.201 Sum_probs=201.9
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg 219 (502)
-..+.+.+.+.+.+...... +.+|....... .......||... ..|.+. ||+++++|+|..||
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~----~~~~~v~~~~~~~~~~~~~~~Htf~----~t~~~~-------spn~~~~Aa~d~dG 227 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCK----IHIYFVPKHTKHTSSRDITVHHTFN----ITCVAL-------SPNERYLAAGDSDG 227 (792)
T ss_pred CccEEEcCCceEEEEEEeee----EEEEEecccceeeccchhhhhhccc----ceeEEe-------ccccceEEEeccCC
Confidence 56788899999888887663 34444444221 111223455433 244443 89999999999999
Q ss_pred cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC
Q 010748 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~ 299 (502)
.|.+|.--.. .........+.-|...|++++|+++| .+|+||+..|.+.+|.+.++
T Consensus 228 rI~vw~d~~~-----------------------~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 228 RILVWRDFGS-----------------------SDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred cEEEEecccc-----------------------ccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCC
Confidence 9999974220 01122233455689999999999995 59999999999999999999
Q ss_pred eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-----------EeecCCeeEEEeCCCCCCEE
Q 010748 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-----------WAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------~~~~~~v~~v~~~~~~~~~~ 368 (502)
+ .+-+..-.++|..+.++|++ .+.+....|+.|.+............ ....+-.+.++++|. .+.+
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~ 360 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSL 360 (792)
T ss_pred C-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCce
Confidence 8 44456678899999999999 77777888999999876433221111 112334567788884 3457
Q ss_pred EEEeCCCcEEEEECCCCCCCCC------------------------------------------CC------------CC
Q 010748 369 VVSLEDGTIKGFDIRTAKSDPD------------------------------------------ST------------SQ 394 (502)
Q Consensus 369 ~~~~~dg~v~i~d~~~~~~~~~------------------------------------------~~------------~~ 394 (502)
+..+..|.|.+||+.+...... .. ..
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 7777888888888766532000 00 00
Q ss_pred ccce-----EEeccCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEECCCC--------CeeEEEEecCCCCcEEEEEEcCC
Q 010748 395 QSSF-----TLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNN--------QPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 395 ~~~~-----~~~~h~~~v~~l~~sp-~~~~~l~t~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v~~~~~spd 460 (502)
..-+ ....|...+...++.+ .....++|++.||.++||-+... ...|......|..++++++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 0000 0122444444444433 33238999999999999988432 12344444458889999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748 461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 461 ~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
|. +++.+.+++|.+||..+...+....+.+.
T Consensus 521 Gs--lla~s~~~~Itiwd~~~~~~l~~~~~~~~ 551 (792)
T KOG1963|consen 521 GS--LLAVSFDDTITIWDYDTKNELLCTEGSRN 551 (792)
T ss_pred Cc--EEEEecCCEEEEecCCChhhhhccccccc
Confidence 97 44467888999999988544444444433
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=1.3e-16 Score=158.91 Aligned_cols=266 Identities=18% Similarity=0.219 Sum_probs=186.7
Q ss_pred ccccccccccCCCceEEEEE-ecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 139 SEDLEDMTINPNDAVIVCAR-NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~-~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
...|.++.|+|....+++|+ ..| .+-+|.........+....-+....+...+.+.|+.. +.+.-+++++.
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~G---qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~-----~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNG---QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN-----EHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCc---eEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc-----CCCCceEEEec
Confidence 35799999999976655554 444 3455554444331123333334444555678888752 33366888888
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe--
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD-- 295 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd-- 295 (502)
||.|..|+++..........+.. .........-...+++++|.+...+.++.|+..|.|..=.
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~---------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLES---------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred CCcEeeeeccccccchhhccccc---------------ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 99999998764332111111110 0000111123467899999998889999999999988733
Q ss_pred -CCCC-----eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC-CCCCccceEeecCCeeEEEeCCCCCCEE
Q 010748 296 -VAAG-----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-ISTHSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 296 -~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 368 (502)
.... +.+..+..|.++|.++.++|-+..+|++++ |-+++||... ...+..........+++++|+|..+.+|
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 2222 123355678999999999999977777776 9999999988 4444444445566699999999988899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 369 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
+++..+|.|.+||+..... .++.+...+....+.+.|++.+ .+|++|...|++.+|++..
T Consensus 458 ~~~d~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDDE-------EPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEcCCCceehhhhhcccc-------CCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCc
Confidence 9999999999999987643 6666666667778888999988 9999999999999999964
No 185
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=4.4e-17 Score=144.94 Aligned_cols=217 Identities=17% Similarity=0.307 Sum_probs=169.2
Q ss_pred CcccceeeEEeccC---CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 264 SHTDSVLGLAWNKE---FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 264 ~h~~~V~~l~~~~~---~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
.|......++|+-+ +..+||.|+.-|.|+|.|+.++++...+.+|...|..+.++|..+++++++|.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46777888888654 345889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceE---eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCC------------------CCCCCCccce-
Q 010748 341 ISTHSGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD------------------PDSTSQQSSF- 398 (502)
Q Consensus 341 ~~~~~~~~~---~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~------------------~~~~~~~~~~- 398 (502)
+..++..+. +|...|.++.|++++. ++++++.|.+|++|++...... +.....-+.+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 998877544 5788999999999987 8999999999999999843210 0000011122
Q ss_pred EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC------------CeeEEEEecCCCCcEEEEE--EcCCCCcE
Q 010748 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------------QPSCIASRNPKAGAVFSVA--FSEDSPFV 464 (502)
Q Consensus 399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~------------~~~~~~~~~~~~~~v~~~~--~spd~~~l 464 (502)
+-..|...|-|+.|-- .++++-|-++.|..|-.... ....+..+......|+-+. |.|-+. +
T Consensus 246 t~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~ 321 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-M 321 (385)
T ss_pred ccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-H
Confidence 3345888888888873 78999999999999987211 1112334444455566554 456677 5
Q ss_pred EEEEeCCCcEEEEECCCCccc
Q 010748 465 LAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 465 l~sg~~dg~i~vwd~~~~~~~ 485 (502)
||.|+..|.|.+||+......
T Consensus 322 la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred HhhccCCCcEEEEECCCCCCc
Confidence 999999999999999988874
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=2.9e-15 Score=145.28 Aligned_cols=242 Identities=10% Similarity=0.121 Sum_probs=151.6
Q ss_pred CCCCCEEEEec-CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 206 REKGNFMAVGS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~-~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
+|++++|++++ .++.|.+|+++....+... . .. ........++|+|+++ +|++
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~--------------------~--~~---~~~~~p~~i~~~~~g~-~l~v 96 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFA--------------------A--ES---PLPGSPTHISTDHQGR-FLFS 96 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEe--------------------e--ee---cCCCCceEEEECCCCC-EEEE
Confidence 89999987764 5789999998621111100 0 00 1122456899999965 5555
Q ss_pred E-ecCCcEEEEeCCC-C---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc------ceEeecC
Q 010748 285 A-SADKQVKIWDVAA-G---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------FKWAVAA 353 (502)
Q Consensus 285 g-s~dg~v~vwd~~~-~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~~~~~ 353 (502)
+ ..++.|.+|++.+ + +.+..+. +.....+++++|++..++++...++.|.+||+.+..... .......
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~ 175 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA 175 (330)
T ss_pred EEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC
Confidence 4 4589999999964 2 2233333 234567789999994444566677999999998633221 0112345
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc------CCCeeEEEEcCCCCCEEEEEe-CC
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGS-TD 426 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s-~d 426 (502)
....+.|+|++..++++...++.|.+|++...... ...+..+..+ ......+.++|++ ++|+++. .+
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~ 249 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTA 249 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCC
Confidence 57789999988744444445899999999742100 1222222221 1233468899998 6666664 47
Q ss_pred CcEEEEECCCCC--eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 427 KMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 427 g~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+.|.+|++.... ...+..... ......+.|+|+|++++++...+++|.+|++..
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 899999986532 112222221 124557899999998666666689999998853
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=6.6e-17 Score=147.68 Aligned_cols=254 Identities=21% Similarity=0.261 Sum_probs=174.4
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
.+.||+|+.|..|+||.+.....-.. ..+-.....+..|..+|+++.|+|+ +.+||||+.+
T Consensus 26 ~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~ 86 (434)
T KOG1009|consen 26 LNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDG 86 (434)
T ss_pred ccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCC
Confidence 44999999999999999876443221 0123344567789999999999999 5699999999
Q ss_pred CcEEEEeCC--------C--------CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748 289 KQVKIWDVA--------A--------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 289 g~v~vwd~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 352 (502)
|.|.+|-.. + ......+.+|...|..++|+|++ .++++++.|..+++||++.+........|.
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccccc
Confidence 999999765 2 23455678899999999999999 999999999999999999999988888999
Q ss_pred CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCC-----------CCccceEEeccC----CCeeEEEEcCCCC
Q 010748 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST-----------SQQSSFTLHAHD----KAVCTISYNPLVP 417 (502)
Q Consensus 353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~-----------~~~~~~~~~~h~----~~v~~l~~sp~~~ 417 (502)
.-+.-++|.|.+. ++++-+.|...+.+.+.......... ......++ -|. .-...++|+|+|
T Consensus 166 ~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL-fhDeTlksFFrRlsfTPdG- 242 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL-FHDETLKSFFRRLSFTPDG- 242 (434)
T ss_pred cccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee-eecCchhhhhhhcccCCCC-
Confidence 9999999999765 67777777766666655432110000 00011111 121 234567899998
Q ss_pred CEEEEEeC----CCc-----EEEEECCCCCeeEEEEecCCCCcEEEEEEcCC-----------------CCcEEEEEeCC
Q 010748 418 NLLATGST----DKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----------------SPFVLAIGGSK 471 (502)
Q Consensus 418 ~~l~t~s~----dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----------------~~~ll~sg~~d 471 (502)
.+|++.+. .+. .++|+-...+ .+...++....+...+.|+|- .+.++|.++.+
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~-rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~ 321 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLK-RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN 321 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeecccccc-CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc
Confidence 78877542 222 3455443322 133344444444555555441 12256666554
Q ss_pred CcEEEEECCCCccccc
Q 010748 472 GKLEIWDTLSDAGISN 487 (502)
Q Consensus 472 g~i~vwd~~~~~~~~~ 487 (502)
.|+|||..+-..+..
T Consensus 322 -svyvydtq~~~P~~~ 336 (434)
T KOG1009|consen 322 -SVYVYDTQTLEPLAV 336 (434)
T ss_pred -eEEEeccccccceEE
Confidence 799999988665543
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.1e-15 Score=138.31 Aligned_cols=230 Identities=17% Similarity=0.223 Sum_probs=169.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
..+...|.+|+.+|. ++|+.+...... ........|.-+-|+.. ++|..
T Consensus 14 Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---------------------------~~~~~~~~IvEmLFSSS---LvaiV 62 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDGY-KIFSCSPFEKCF---------------------------SKDTEGVSIVEMLFSSS---LVAIV 62 (391)
T ss_pred ccceeEEEccCCCce-eEEecCchHHhh---------------------------cccCCCeEEEEeecccc---eeEEE
Confidence 678889999999885 477775422100 11112234555667654 67766
Q ss_pred ecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---ecCCeeEEEe
Q 010748 286 SADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLAW 360 (502)
Q Consensus 286 s~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~~ 360 (502)
+.+.. +++.+++.+..+..+. ....|.++.++.+ .|+++-.+. |+|||++..+....... +...+.+++.
T Consensus 63 ~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 63 SIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP 137 (391)
T ss_pred ecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence 66544 9999999888887776 5678999999875 355555444 99999998876654332 3344555555
Q ss_pred CCCCCCEEEE--EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc-EEEEECCCC
Q 010748 361 DPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSNN 437 (502)
Q Consensus 361 ~~~~~~~~~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~-i~vwd~~~~ 437 (502)
++.+. +++. +...|.|.+||+.+. +++..+.+|.+++.+++|+++| .+|||+|..|+ ||||.+.++
T Consensus 138 n~~n~-ylAyp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 138 NNANC-YLAYPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCCCc-eEEecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCc
Confidence 55443 3433 345789999999987 8899999999999999999998 99999999998 799999999
Q ss_pred CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
+....+.+......|.+++|+|+++| |++.|+.++|+||.+....
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence 85444444444556899999999995 8888899999999997654
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=3.2e-16 Score=139.07 Aligned_cols=251 Identities=18% Similarity=0.233 Sum_probs=185.4
Q ss_pred cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748 189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268 (502)
Q Consensus 189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 268 (502)
+....+|.+| ++++..+|++.....|.||.....+. ....+.+..|...
T Consensus 9 ~~~pitchAw-------n~drt~iAv~~~~~evhiy~~~~~~~------------------------w~~~htls~Hd~~ 57 (361)
T KOG1523|consen 9 LLEPITCHAW-------NSDRTQIAVSPNNHEVHIYSMLGADL------------------------WEPAHTLSEHDKI 57 (361)
T ss_pred ccCceeeeee-------cCCCceEEeccCCceEEEEEecCCCC------------------------ceeceehhhhCcc
Confidence 3445578888 78999999999999999999865433 3344556689999
Q ss_pred eeeEEeccCCCcEEEEEecCCcEEEEeCCC-C--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-
Q 010748 269 VLGLAWNKEFRNILASASADKQVKIWDVAA-G--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH- 344 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 344 (502)
|+++.|+|. .+.|++|+.|..-+||.... + ++...+..++..++++.|+|.+ +.|++|+.-+.|.||-+....-
T Consensus 58 vtgvdWap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 58 VTGVDWAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred eeEEeecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccce
Confidence 999999999 67999999999999999833 3 4555666789999999999999 8999999999999998876542
Q ss_pred ---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCC-------CCC--CCCCccceEEeccCCCeeEEEE
Q 010748 345 ---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS-------DPD--STSQQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 345 ---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~-------~~~--~~~~~~~~~~~~h~~~v~~l~~ 412 (502)
......+.+.|+++.|+|++ -++++|+.|+.+++|..--... ... .+.......+....+.+..+.|
T Consensus 136 WVsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 136 WVSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred ehhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 22344567889999999975 4889999999999987532211 000 0111222333355688999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748 413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vw 477 (502)
+|.| ..|+-.+.|+++.+-|.....+... ......-+..++.|-.+.. +++++.+..-.++
T Consensus 215 s~sG-~~lawv~Hds~v~~~da~~p~~~v~-~~~~~~lP~ls~~~ise~~--vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 215 SPSG-NRLAWVGHDSTVSFVDAAGPSERVQ-SVATAQLPLLSVSWISENS--VVAAGYDCGPVLF 275 (361)
T ss_pred CCCC-CEeeEecCCCceEEeecCCCchhcc-chhhccCCceeeEeecCCc--eeecCCCCCceEE
Confidence 9998 8999999999999999877653222 2222236788888877664 5556666433333
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.1e-16 Score=142.90 Aligned_cols=204 Identities=18% Similarity=0.181 Sum_probs=156.3
Q ss_pred eeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748 270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 349 (502)
Q Consensus 270 ~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 349 (502)
.+++|+.+ +..|++|+.||++|||+..+...+.....|...|.+|.|+|++ .+|++.+.| ..+||+.+++.......
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC
Confidence 78899999 4599999999999999988888888888899999999999999 999999999 99999999985554333
Q ss_pred e--ecCCeeEEEeCCCC---CCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748 350 A--VAADVESLAWDPHA---EHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 350 ~--~~~~v~~v~~~~~~---~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~ 423 (502)
. .......+.|..++ ..++++. ..-+.|+.|++...... . ..+..+.......|++++.+++| ++++.|
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~---~l~~~~~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-N---FLRLRKKIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-c---ccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence 1 22335666776654 2123322 34456777777654221 0 11233333344579999999998 999999
Q ss_pred eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
+.||.|-|++..+.+. ..+....|.+.|+.+.|+|+.++ +++-+.+..+.|..+.-..
T Consensus 300 T~dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred ccCCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEeecc
Confidence 9999999999988874 44556789999999999999997 7778888888888876543
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=7.7e-18 Score=166.05 Aligned_cols=236 Identities=23% Similarity=0.372 Sum_probs=180.5
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|...|.++++|+.|..++||..++..++. ...||.+.|+.++.+.. ..++|+
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lA---------------------------s~rGhs~ditdlavs~~-n~~iaa 249 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLA---------------------------SCRGHSGDITDLAVSSN-NTMIAA 249 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhc---------------------------cCCCCccccchhccchh-hhhhhh
Confidence 36789999999999999999988755443 34589999999999988 669999
Q ss_pred EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCcc---ceEeec--------
Q 010748 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSG---FKWAVA-------- 352 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~---~~~~~~-------- 352 (502)
+|.|..|++|-+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+- ..... ..+...
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence 9999999999999999999999999999999999954 778999999999881 11000 000000
Q ss_pred ------------------CCeeEEEeCCC----------CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748 353 ------------------ADVESLAWDPH----------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404 (502)
Q Consensus 353 ------------------~~v~~v~~~~~----------~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~ 404 (502)
..+.+++|... ...+.+++-.+-.+++|++.++ .....+.+|.
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghs 395 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHS 395 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccc
Confidence 11222233221 1122333334455677777776 6677788899
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
..+..+.++|.++....+++.||...|||+..+.+...+. .+| +.+...+|+++|.. ++....-|.++|.....++.
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFSqdgts-~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFSQDGTS-IALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccCCCCce-EecCCCCCceEEeccCCCcc
Confidence 9999999999988899999999999999999988765555 444 66788899999985 77667778999988766654
Q ss_pred c
Q 010748 485 I 485 (502)
Q Consensus 485 ~ 485 (502)
.
T Consensus 473 ~ 473 (1113)
T KOG0644|consen 473 Q 473 (1113)
T ss_pred c
Confidence 4
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=2.2e-15 Score=150.39 Aligned_cols=244 Identities=32% Similarity=0.482 Sum_probs=188.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc-cceeeEEe-ccCCCcEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAW-NKEFRNILA 283 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-~~~~~~~l~ 283 (502)
.+.+..++.++.++.+.+|+...... ....+.++. ..+..+.+ ++++..+++
T Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 74 SPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHDSSVSKLALSSPDGNSILL 127 (466)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCCCceeeEEEECCCcceEEe
Confidence 57799999999999999999875320 111112222 36777777 777443555
Q ss_pred EEec-CCcEEEEeCCC-CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCccceEeecCCeeEEEe
Q 010748 284 SASA-DKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAVAADVESLAW 360 (502)
Q Consensus 284 sgs~-dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 360 (502)
..+. |+.+.+|++.. ......+..|...|.++.|+|.+ ..+++++. ++.+++|++...........+...+.+++|
T Consensus 128 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred ccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence 5444 99999999998 78888889999999999999999 67888875 999999999986666555568889999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce-EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
+|.+..++++++.++.|++||.+.. .... .+..|...+ ...|+|++ .++++++.|+.+++|++.....
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc
Confidence 9877634555589999999988844 4444 577787775 44899987 8888999999999999987764
Q ss_pred eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
.+.....|...|.++.|.|++.. +++++.++.+++|++.+........
T Consensus 276 -~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 276 -LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred -EEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee
Confidence 23333677889999999998875 5558888999999988877655443
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.2e-15 Score=127.83 Aligned_cols=289 Identities=17% Similarity=0.223 Sum_probs=181.8
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCCee--eeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~l~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
..|.+-+++|.+++|++|...+++..+.+-........ ...+. .-|+.++ ..+.+ ...+|++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpi----y~~~f---------~d~~Lls 77 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPI----YYLAF---------HDDFLLS 77 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCe----eeeee---------ehhheee
Confidence 35778899999999999999996555555444332221 11111 2233332 33333 2556777
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
|+ ||.|+=|..+........ +.. ... +.+...-...--.|+++...|. .+-++.++.|+.++-|
T Consensus 78 ~g-dG~V~gw~W~E~~es~~~---------K~l---we~--~~P~~~~~~evPeINam~ldP~-enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 78 GG-DGLVYGWEWNEEEESLAT---------KRL---WEV--KIPMQVDAVEVPEINAMWLDPS-ENSILFAGGDGVIYQV 141 (325)
T ss_pred cc-CceEEEeeehhhhhhccc---------hhh---hhh--cCccccCcccCCccceeEeccC-CCcEEEecCCeEEEEE
Confidence 76 499999987643221000 000 000 0011110122356899999998 4456666689999999
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe----------ecCCeeEEEeCCCC
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----------VAADVESLAWDPHA 364 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~v~~~~~~ 364 (502)
|+++|+..+++++|++.|.++.-.... ..+++|+.||++++||+++.+....... ....|-+++-+.
T Consensus 142 dlE~G~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-- 218 (325)
T KOG0649|consen 142 DLEDGRIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-- 218 (325)
T ss_pred EecCCEEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--
Confidence 999999999999999999999885555 5789999999999999999887653321 123466666554
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. .+++| ....+.+|.++.... .+++.+. .++..+.|.. .++++++..+.|.-|.+..- ....
T Consensus 219 d-WlvCG-gGp~lslwhLrsse~-------t~vfpip---a~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gv---l~a~ 280 (325)
T KOG0649|consen 219 D-WLVCG-GGPKLSLWHLRSSES-------TCVFPIP---ARVHLVDFVD---DCVLIGGEGNHVQSYTLNGV---LQAN 280 (325)
T ss_pred c-eEEec-CCCceeEEeccCCCc-------eEEEecc---cceeEeeeec---ceEEEeccccceeeeeeccE---EEEe
Confidence 2 44444 466799999998632 3344444 4466677774 67888888888999987542 1222
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
.+......++..|+..--.+|..+|..+.+.|+.
T Consensus 281 ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 281 IPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 2222234555555433322466677777777763
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=7.6e-16 Score=155.80 Aligned_cols=247 Identities=18% Similarity=0.215 Sum_probs=176.5
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec-cCCCcEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILA 283 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~ 283 (502)
|+|=...++++...-.|+|||...+..+..+- .-..-...|+.|.+- .+...+|+
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~------------------------n~~~~~t~Vs~l~liNe~D~aLlL 1127 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFD------------------------NGAFPDTRVSDLELINEQDDALLL 1127 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCceecccc------------------------CCCCCCCccceeeeecccchhhee
Confidence 45667788888877899999997654432211 001233568888874 34466899
Q ss_pred EEecCCcEEEEeCC-----CCeeeEeeccC-------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc-eEe
Q 010748 284 SASADKQVKIWDVA-----AGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWA 350 (502)
Q Consensus 284 sgs~dg~v~vwd~~-----~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~ 350 (502)
+|+.||.|+||+-- ..+.+..+.+- .+.-.-+.|.... .+|++++.-..|+|||........- ...
T Consensus 1128 tas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1128 TASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccC
Confidence 99999999999742 22344333221 1222446788777 4566666689999999987665432 223
Q ss_pred ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC--eeEEEEcCCCCCEEEEEeCCCc
Q 010748 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
....++++.-+...++++++|..||.|++||.|.... ...+.....|+.. |..+.+.+.|-..|++|+.+|.
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 4556888877666677999999999999999998732 2456777788877 9999999988667999999999
Q ss_pred EEEEECCCCCeeEEEEecCCC--C-cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 429 VKLWDLSNNQPSCIASRNPKA--G-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~--~-~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
|++||++........+...|. | .++++..++..+ ++|+|+. +.|+||++.....
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhh
Confidence 999999985322333333332 4 599999999999 7998888 8999999976554
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=9.9e-18 Score=165.31 Aligned_cols=226 Identities=16% Similarity=0.275 Sum_probs=173.5
Q ss_pred cccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748 257 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 336 (502)
Q Consensus 257 ~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~i 336 (502)
+....+.+|..+|+|+.|... +.++++|+.|..|+||.+.++.++.+..+|.+.|+.++.+..+ .++++++.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEE
Confidence 334456799999999999999 5699999999999999999999999999999999999999888 88999999999999
Q ss_pred EecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC-----CCCccceEEec---------
Q 010748 337 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-----TSQQSSFTLHA--------- 402 (502)
Q Consensus 337 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~-----~~~~~~~~~~~--------- 402 (502)
|.++.+..+..+.+|.+.|++++|+|. .+++.||++++||.+-......+ .....+..+..
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 999999999999999999999999994 37788999999999821110000 00000000000
Q ss_pred -------cCCCeeEEEEcC----------CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEE
Q 010748 403 -------HDKAVCTISYNP----------LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL 465 (502)
Q Consensus 403 -------h~~~v~~l~~sp----------~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll 465 (502)
.....-+++|.. +...+.+++-.+..+++|++.++. ......+|...+..+.++|-.+.+.
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCcHhh
Confidence 000111122222 111344445556678889998887 5667778899999999999988778
Q ss_pred EEEeCCCcEEEEECCCCccccccccC
Q 010748 466 AIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 466 ~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
.+++.||...|||+-.+..++..+..
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecc
Confidence 89999999999999999988777643
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.8e-16 Score=147.91 Aligned_cols=306 Identities=14% Similarity=0.180 Sum_probs=215.3
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCee-eeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
..|.+-|+.+.|...|..|++|+.+. .+-+|.|...... ..+. .|...+ +...|+++ .+..-+++
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~---~vv~WdW~~~~~~-l~f~SGH~~Nv-----fQaKFiP~-----s~d~ti~~ 204 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDL---QVVVWDWVSGSPK-LSFESGHCNNV-----FQAKFIPF-----SGDRTIVT 204 (559)
T ss_pred cCCCCccceeeecccCceeeccCccc---eEEeehhhccCcc-cccccccccch-----hhhhccCC-----CCCcCcee
Confidence 56899999999999999999999775 5566776655431 1112 233222 33344433 34667899
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
++.||.+++=.+....... ....+..|.++|.-++.-|...+.|.|++.|+.|.-.
T Consensus 205 ~s~dgqvr~s~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI 260 (559)
T ss_pred ccccCceeeeeecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeee
Confidence 9999999997765322222 1223457999999999999989999999999999999
Q ss_pred eCCCCeeeEee---ccCCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc------cceE------eecCCee
Q 010748 295 DVAAGKCNLTL---EHHTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS------GFKW------AVAADVE 356 (502)
Q Consensus 295 d~~~~~~~~~~---~~h~~---~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~------~~~~~v~ 356 (502)
|++++.+...+ ..+.. ...+++.+|...+.+++|+.|..+++||.|.-... .... ...-.|+
T Consensus 261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 99887654443 23333 56789999999889999999999999998853322 1010 2244699
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC-CCCC--CccceE-EeccCC--CeeEEEE-cCCCCCEEEEEeCCCcE
Q 010748 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-DSTS--QQSSFT-LHAHDK--AVCTISY-NPLVPNLLATGSTDKMV 429 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~-~~~~--~~~~~~-~~~h~~--~v~~l~~-sp~~~~~l~t~s~dg~i 429 (502)
+++|+.++. -++++..|-.|++|.-..+.... .+.. ...+.. +++|.. .|-++-| -|.. .++++|+.-|.|
T Consensus 341 gl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhI 418 (559)
T KOG1334|consen 341 GLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHI 418 (559)
T ss_pred eEEecCCcc-ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceE
Confidence 999997665 57777788889999544332210 0000 012222 567753 4666655 4554 899999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
.||+-.+++.+.. +.+...-|+|+.-+|--+ +||++|-|..|+||-..+.+.
T Consensus 419 FiW~K~t~eii~~--MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 419 FIWDKKTGEIIRF--MEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred EEEecchhHHHHH--hhcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence 9999999884333 344444899999999999 799999999999998855443
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=3.5e-16 Score=150.94 Aligned_cols=230 Identities=19% Similarity=0.302 Sum_probs=166.9
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
++|-|||..|+.+.. ..+.|||.+.+..++ .+++|.+.|+|++|+.+ +..+
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llq---------------------------tLKgHKDtVycVAys~d-GkrF 68 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---------------------------PLKGHKDTVYCVAYAKD-GKRF 68 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCccccc---------------------------ccccccceEEEEEEccC-Ccee
Confidence 344799988877754 578899998765555 35689999999999999 5699
Q ss_pred EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
|||+.|..|.+|.-.-. -+..+ .|++.|+||.|+|-. +.|++++.+ ..-+|........ .......+.+++|..
T Consensus 69 ASG~aDK~VI~W~~klE-G~LkY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLE-GILKY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWTN 142 (1081)
T ss_pred ccCCCceeEEEeccccc-ceeee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeecC
Confidence 99999999999985422 22233 499999999999998 788888754 3567766543322 344556789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC----CEEEEEeCCCcEEEEECCCCC
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP----NLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~----~~l~t~s~dg~i~vwd~~~~~ 438 (502)
+|. +++.|..+|+|.+-+..... ...+..-.+...+|.+++|+|..+ ..++......++.+|.+....
T Consensus 143 DGq-ylalG~~nGTIsiRNk~gEe-------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 143 DGQ-YLALGMFNGTISIRNKNGEE-------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ 214 (1081)
T ss_pred CCc-EEEEeccCceEEeecCCCCc-------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence 876 89999999999987544321 122233345678999999999642 467777778888888776432
Q ss_pred eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 439 ~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
+-.-..-.-...|+.+.|+|.| +..||.++.+++|--
T Consensus 215 ---Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 215 ---IGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFTR 251 (1081)
T ss_pred ---ecccccCCCCchhheeccCCcE-EEEccCCCceEEEee
Confidence 2211222233568999999998 556889999998853
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=3.2e-17 Score=152.01 Aligned_cols=224 Identities=17% Similarity=0.240 Sum_probs=182.0
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
++.+|.+|+.|+..|.|-.+|..++.....+ .-...|.++.|..+ .+++|+
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----------------------------~v~Etv~Dv~~LHn-eq~~AV 187 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI----------------------------NVMETVRDVTFLHN-EQFFAV 187 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeee----------------------------ehhhhhhhhhhhcc-hHHHHh
Confidence 3789999999999999999998764433221 23467889999877 556666
Q ss_pred EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 364 (502)
+- ...+.||| ..|..++.++.| ..|..|.|-|.. .+|++++..|.++--|+.+++.+.......+.+..++-+|.+
T Consensus 188 AQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 188 AQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred hh-hceEEEec-CCCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence 54 47899999 668888888755 468899999998 889999999999999999999888777777888899999976
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. ++-+|..+|+|.+|...+. .++..+..|.++|++|++.+.| ++++|.+.|..++|||+++... +.+
T Consensus 264 a-Vih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~q--l~t 330 (545)
T KOG1272|consen 264 A-VIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQ--LHT 330 (545)
T ss_pred c-eEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccc--cce
Confidence 5 7889999999999998876 7888899999999999999998 9999999999999999998762 333
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
... ..+...++||..| +||. |....|.||.
T Consensus 331 ~~t-p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 331 YRT-PHPASNLSLSQKG--LLAL-SYGDHVQIWK 360 (545)
T ss_pred eec-CCCcccccccccc--ceee-ecCCeeeeeh
Confidence 222 3456778898887 4664 4455799994
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.7e-14 Score=128.86 Aligned_cols=306 Identities=16% Similarity=0.214 Sum_probs=188.2
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg 219 (502)
-.+.-++|+|.-.-++++..++ .|.+|+.... .+....+. ...-..|++|-+. .++-|++|+. +
T Consensus 99 ~dlr~~aWhqH~~~fava~ndd-----vVriy~ksst-~pt~Lks~---sQrnvtclawRPl------saselavgCr-~ 162 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDD-----VVRIYDKSST-CPTKLKSV---SQRNVTCLAWRPL------SASELAVGCR-A 162 (445)
T ss_pred cceeeEeechhhhhhhhhccCc-----EEEEeccCCC-CCceecch---hhcceeEEEeccC------Ccceeeeeec-c
Confidence 4567889999888888888887 6666665553 22222221 2233479999633 4668888887 5
Q ss_pred cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec-CCcEEEEeCCC
Q 010748 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAA 298 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-dg~v~vwd~~~ 298 (502)
-|.||..+..-........+ ...........+| ..|++|+|+++|. .|++++. |..|.|||..+
T Consensus 163 gIciW~~s~tln~~r~~~~~-------------s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdt 227 (445)
T KOG2139|consen 163 GICIWSDSRTLNANRNIRMM-------------STHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDT 227 (445)
T ss_pred eeEEEEcCcccccccccccc-------------cccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCC
Confidence 58899886422211100000 0001112233356 7999999999954 7777665 67899999999
Q ss_pred CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~ 378 (502)
+.++......-+.++-+.|+|++ .+|++++.|+..++|..........-....+.|...+|+|.|..++++.+..-.|+
T Consensus 228 g~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 228 GQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 98776654456789999999999 89999999999999966543322212233558999999999997777776555444
Q ss_pred EEECCCCCCCCC-CC---CCccceEE-----ec----cCCCeeEEEEcCCCCCEEEEEeCCC--------cEEEEECCCC
Q 010748 379 GFDIRTAKSDPD-ST---SQQSSFTL-----HA----HDKAVCTISYNPLVPNLLATGSTDK--------MVKLWDLSNN 437 (502)
Q Consensus 379 i~d~~~~~~~~~-~~---~~~~~~~~-----~~----h~~~v~~l~~sp~~~~~l~t~s~dg--------~i~vwd~~~~ 437 (502)
-........... .. ...++..+ .+ ..+++.+++|.|.| .+||+.-..+ .|.+||.+..
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 333222211000 00 00001111 11 14678999999998 7777765433 3667887765
Q ss_pred CeeEEEE--ecCCCCcEEEEEEcC---CCCcEEEEEeCCCcEEEEECC
Q 010748 438 QPSCIAS--RNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 438 ~~~~~~~--~~~~~~~v~~~~~sp---d~~~ll~sg~~dg~i~vwd~~ 480 (502)
-+..... ..+. ....-++|+| +++ +|..+=+.|.+.-|.+.
T Consensus 386 p~vels~cg~i~g-e~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 386 PPVELSYCGMIGG-EYPAYISFGPLKNEGR-LLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CceEEEecccccC-CCCceEEeeecccCCc-EEEEEeccCceEeeeeE
Confidence 4322221 1111 1133455554 456 67778888888888764
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=5.6e-15 Score=131.61 Aligned_cols=290 Identities=16% Similarity=0.259 Sum_probs=182.3
Q ss_pred ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCE-EEEecCCCcEEE
Q 010748 145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF-MAVGSMEPAIEI 223 (502)
Q Consensus 145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-la~g~~dg~I~i 223 (502)
..|+|+|++||+++.. ++-|... . .+..||-...-.....++| ..+.-+ |.+...++.|.+
T Consensus 14 c~fSp~g~yiAs~~~y----rlviRd~--~-----tlq~~qlf~cldki~yieW-------~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY----RLVIRDS--E-----TLQLHQLFLCLDKIVYIEW-------KADSCHILCVAYKDPKVQV 75 (447)
T ss_pred eeECCCCCeeeeeeee----EEEEecc--c-----hhhHHHHHHHHHHhhheee-------eccceeeeeeeeccceEEE
Confidence 5799999999999744 2333322 2 4444543222112235667 455554 455677889999
Q ss_pred eeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeE
Q 010748 224 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 303 (502)
Q Consensus 224 wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~ 303 (502)
|++...+ -.........++.+++|+|+|+++|.+...+-.|.||.+.+.+...
T Consensus 76 wsl~Qpe---------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 76 WSLVQPE---------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred EEeecce---------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 9996321 1112234567899999999999999999999999999999877643
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEEeCC------------------------------------CcEEEEecCCCCCccc
Q 010748 304 TLEHHTDKVQAVAWNHHSPQILLSGSFD------------------------------------RSVVMKDARISTHSGF 347 (502)
Q Consensus 304 ~~~~h~~~v~~l~~~~~~~~~l~s~s~d------------------------------------g~i~iwd~~~~~~~~~ 347 (502)
++.-...+..++|+|+| ++.+..+.- ..+.+||.--.-.+ .
T Consensus 129 -~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-~ 205 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-Y 205 (447)
T ss_pred -ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee-e
Confidence 33344566888999998 666655432 12333332111110 0
Q ss_pred eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCC------------------------------------CCC-
Q 010748 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS------------------------------------DPD- 390 (502)
Q Consensus 348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~------------------------------------~~~- 390 (502)
.....-.+..++|+|.+. ++++|+.|+.+++.+--+-+. ...
T Consensus 206 aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~ 284 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL 284 (447)
T ss_pred eeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence 122345688899999654 899999999988765322211 000
Q ss_pred -------C-------------CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCC
Q 010748 391 -------S-------------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPK 448 (502)
Q Consensus 391 -------~-------------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~ 448 (502)
. ...++..-+......+.-++|+++. .+++|-.. -+.+-+||++..+. ...--.
T Consensus 285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l---~avLiQ 360 (447)
T KOG4497|consen 285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL---HAVLIQ 360 (447)
T ss_pred ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh---hhhhhh
Confidence 0 0000111111223457788999986 77777543 35699999998773 233334
Q ss_pred CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
..+|....|+|..+. |+.+.....+++|-......+...
T Consensus 361 k~piraf~WdP~~pr-L~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 361 KHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred ccceeEEEeCCCCce-EEEEcCCceEEEEcCCCceEEecC
Confidence 567999999999985 555666668999998775555443
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=3.8e-15 Score=140.79 Aligned_cols=231 Identities=13% Similarity=0.166 Sum_probs=160.1
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 221 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I 221 (502)
+....++-.|..|+..-.+ -|-||.|......... .....-...-|.|-.+.... -.+.+--|++|-..|.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~----~lyv~~~~g~~~~~~p--i~k~~y~gt~P~cHdfn~~~--a~~~g~dllIGf~tGqv 197 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR----ELYVYSYRGAADLSKP--IDKREYKGTSPTCHDFNSFT--ATPKGLDLLIGFTTGQV 197 (636)
T ss_pred eeeccccCCCCEEEEecCC----eEEEEEccCcchhccc--hhhhcccCCCCceecccccc--cCCCCcceEEeeccCce
Confidence 4455556667777666544 2455555532221111 11111122335565553221 14677788899888999
Q ss_pred EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC---
Q 010748 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--- 298 (502)
Q Consensus 222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~--- 298 (502)
.+.+... .+...| ......-.+..|+|+.|-|.+..+++.+-.+|.+.+||...
T Consensus 198 q~idp~~----~~~skl-------------------fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~ 254 (636)
T KOG2394|consen 198 QLIDPIN----FEVSKL-------------------FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG 254 (636)
T ss_pred EEecchh----hHHHHh-------------------hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence 9887643 110000 00001123478999999998888999999999999997531
Q ss_pred -----------C--------------eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748 299 -----------G--------------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 299 -----------~--------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 353 (502)
+ .++..+.--.+.|...+|+|+| .+|++.+.||.++|||..+..........-+
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG 333 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFG 333 (636)
T ss_pred CCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhcc
Confidence 1 1111222234578899999988 9999999999999999998887776667778
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
...|++|+|+++ ++++|++|-.|.+|.+... +.+..-++|..+|+.++|.|
T Consensus 334 GLLCvcWSPDGK-yIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGK-YIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCcc-EEEecCCcceEEEEEeccc---------eEEEeccccccceeeEeecc
Confidence 899999999986 8999999999999999876 77888899999999999997
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3.6e-14 Score=126.16 Aligned_cols=180 Identities=19% Similarity=0.338 Sum_probs=136.9
Q ss_pred CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCccceEee--cCCeeEEEeCCCCC
Q 010748 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAV--AADVESLAWDPHAE 365 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~--~~~v~~v~~~~~~~ 365 (502)
+.|.|||=...+++.++. ...+|.++.+.++. +++. ..+.|.+|.... .+........ +..+. +..|...
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC--~~~~~~~ 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLC--SLCPTSN 147 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccCCCceE--eecCCCC
Confidence 479999977778888886 57899999999854 4443 467899999873 3333222221 22333 3344333
Q ss_pred CEEEE--EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc-EEEEECCCCCeeEE
Q 010748 366 HSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSNNQPSCI 442 (502)
Q Consensus 366 ~~~~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~-i~vwd~~~~~~~~~ 442 (502)
..+++ |..-|.|++-|+..... .+...+.+|.+.|.|++.+.+| .++||+|..|+ |||||..++.+..-
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence 33333 56779999999987631 2467889999999999999998 99999999998 89999999997666
Q ss_pred EEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
.........|.+++|||+..+ ||+++..|+|+|+.++....
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred eecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCCC
Confidence 666666788999999999995 99999999999999977553
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=5.7e-14 Score=136.24 Aligned_cols=249 Identities=10% Similarity=0.105 Sum_probs=151.2
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-C
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-E 218 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~-d 218 (502)
.....+.++|++++|+++.... ..+.+|.++. .+ .+........+..|..+.+ +|++++|++++. +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~-~g---~l~~~~~~~~~~~p~~i~~-------~~~g~~l~v~~~~~ 101 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPE--FRVLSYRIAD-DG---ALTFAAESPLPGSPTHIST-------DHQGRFLFSASYNA 101 (330)
T ss_pred CCCccEEECCCCCEEEEEECCC--CcEEEEEECC-CC---ceEEeeeecCCCCceEEEE-------CCCCCEEEEEEcCC
Confidence 4567789999999998876533 3455566552 22 2322222223333444433 899998888764 7
Q ss_pred CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~ 298 (502)
+.|.+|+++....... ..... .+.....+++++|+++.++++...++.|.+||+.+
T Consensus 102 ~~v~v~~~~~~g~~~~-----------------------~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 102 NCVSVSPLDKDGIPVA-----------------------PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CeEEEEEECCCCCCCC-----------------------ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 8999999963211110 00001 12234677889999765556777789999999976
Q ss_pred CeeeE-------eeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEecCCC--CCc--cceEee------cCCeeEEEe
Q 010748 299 GKCNL-------TLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARIS--THS--GFKWAV------AADVESLAW 360 (502)
Q Consensus 299 ~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~--~~~--~~~~~~------~~~v~~v~~ 360 (502)
...+. .+. .......+.|+|++ ++++++.. +++|.+|++... ... ...... ......+.+
T Consensus 158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCcccccCCCceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 43221 111 13446789999999 66666655 999999999742 211 101111 112335889
Q ss_pred CCCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECC
Q 010748 361 DPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS 435 (502)
Q Consensus 361 ~~~~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~ 435 (502)
+|++. +++++ ..++.|.+|++...... ...+..... ......+.++|++ ++|+++. .+++|.+|++.
T Consensus 236 ~pdg~-~lyv~~~~~~~I~v~~i~~~~~~-----~~~~~~~~~-~~~p~~~~~~~dg-~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 236 TPDGR-HLYACDRTASLISVFSVSEDGSV-----LSFEGHQPT-ETQPRGFNIDHSG-KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCC-EEEEecCCCCeEEEEEEeCCCCe-----EEEeEEEec-cccCCceEECCCC-CEEEEEEccCCcEEEEEEc
Confidence 99876 55555 45789999999654100 011222222 1245678999998 5555555 58999999875
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=7.7e-16 Score=145.61 Aligned_cols=221 Identities=20% Similarity=0.297 Sum_probs=162.1
Q ss_pred CeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCccccc
Q 010748 180 NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIK 259 (502)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 259 (502)
.|.+|...+ .|++| +.+|.+||+|+.|-.+.|||.-.. +...
T Consensus 45 eL~GH~GCV-----N~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~--------------------------Kllh 86 (758)
T KOG1310|consen 45 ELTGHTGCV-----NCLEW-------NADGELLASGSDDTRLIVWDPFEY--------------------------KLLH 86 (758)
T ss_pred hhcccccee-----cceee-------cCCCCEEeecCCcceEEeecchhc--------------------------ceee
Confidence 455565444 68888 689999999999999999997521 2333
Q ss_pred ccccCcccceeeEEeccCC-CcEEEEEecCCcEEEEeCCCC----------eeeEeeccCCCCeEEEEEcCCCCcEEEEE
Q 010748 260 YKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 260 ~~~~~h~~~V~~l~~~~~~-~~~l~sgs~dg~v~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 328 (502)
....+|...|.++.|-|.. ..+++||+.|..|+|+|+... ...+.+..|...|..|+..|.+++.+.++
T Consensus 87 sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa 166 (758)
T KOG1310|consen 87 SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA 166 (758)
T ss_pred eeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe
Confidence 4456999999999999863 348899999999999999842 34455677999999999999999999999
Q ss_pred eCCCcEEEEecCCCCCccceE----------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC------C
Q 010748 329 SFDRSVVMKDARISTHSGFKW----------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS------T 392 (502)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~------~ 392 (502)
+.||+|+-+|+|.+....... ..--...|+..+|..+++|++|+.+-..++||.|........ .
T Consensus 167 sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~ 246 (758)
T KOG1310|consen 167 SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC 246 (758)
T ss_pred cCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence 999999999999754322111 111346789999999999999999999999996543221100 0
Q ss_pred ---CCccceEE-eccC-----------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 393 ---SQQSSFTL-HAHD-----------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 393 ---~~~~~~~~-~~h~-----------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
.-.++..+ .+|- ..++-+.|+|+|..+|++-+.+ .|++||+...+.
T Consensus 247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence 00112222 2222 1256788999997777776655 599999988774
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=3.1e-15 Score=132.93 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=166.6
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~ 341 (502)
-..+|+|.+|+++ +..+|.+.....|.||..... +..++++.|...|++++|+|.. +.|++++.|...++|....
T Consensus 9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence 3478999999999 779999999999999987655 4788999999999999999999 8899999999999999854
Q ss_pred C---CCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748 342 S---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 342 ~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
+ +....+..+....+++.|+|.. +.|++|+....|.+|-+.....-. .....-..+...|+++.|+|++ -
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccCCc-c
Confidence 3 2344567889999999999975 589999999999998887642211 1111233466789999999987 8
Q ss_pred EEEEEeCCCcEEEEECCCC----C----------e--eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 419 LLATGSTDKMVKLWDLSNN----Q----------P--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~----~----------~--~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
+|++|+.|+.++||..--. + | .++.......+.|..+.|+|+|. .|+-.+.|+.+.+=|....
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCC
Confidence 9999999999999974210 0 0 12333335678899999999999 6998999999999998766
Q ss_pred c
Q 010748 483 A 483 (502)
Q Consensus 483 ~ 483 (502)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 5
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1e-14 Score=131.56 Aligned_cols=241 Identities=18% Similarity=0.213 Sum_probs=161.5
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
++.-..+|+++.|-.|+||+-.. .+ + ..........|+|++|-|.+...|+.|
T Consensus 107 hqH~~~fava~nddvVriy~kss-t~--p------------------------t~Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 107 HQHIIAFAVATNDDVVRIYDKSS-TC--P------------------------TKLKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred chhhhhhhhhccCcEEEEeccCC-CC--C------------------------ceecchhhcceeEEEeccCCcceeeee
Confidence 55556688999999999998653 11 0 001112446799999999988899999
Q ss_pred ecCCcEEEEeCCCC----ee----------eEeeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCccceEe
Q 010748 286 SADKQVKIWDVAAG----KC----------NLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWA 350 (502)
Q Consensus 286 s~dg~v~vwd~~~~----~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~ 350 (502)
+.. -|++|..... +. +....+| .+|++|+|+++| ..+++++. +..|.|||..++......+.
T Consensus 160 Cr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~ 236 (445)
T KOG2139|consen 160 CRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPK 236 (445)
T ss_pred ecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccccc
Confidence 885 4999986422 11 1122344 689999999999 66666654 67899999999988776667
Q ss_pred ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010748 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430 (502)
Q Consensus 351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~ 430 (502)
..+.+.-+.|+|++. .+++++-|+..++|..... ... .......+.|...+|+|.|..+|++++..-.++
T Consensus 237 glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~--------wt~-erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQS--------WTK-ERWILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CCCceeeEEEcCCCC-EEEEecccceeeeehhccc--------cee-cceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 778899999999987 7888888999999965543 111 122223458999999999977777776554443
Q ss_pred EEECCCCCe-----------eEEEEe---------cCCCCcEEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCC
Q 010748 431 LWDLSNNQP-----------SCIASR---------NPKAGAVFSVAFSEDSPFVLAIGGSK--------GKLEIWDTLSD 482 (502)
Q Consensus 431 vwd~~~~~~-----------~~~~~~---------~~~~~~v~~~~~spd~~~ll~sg~~d--------g~i~vwd~~~~ 482 (502)
-..+....+ ..+..+ ....+.+.+++|.|.|.| ||+.-.. +.|.+||....
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhccccc
Confidence 322221110 011111 112467899999999997 5543322 23667777665
Q ss_pred ccccc
Q 010748 483 AGISN 487 (502)
Q Consensus 483 ~~~~~ 487 (502)
..+.-
T Consensus 386 p~vel 390 (445)
T KOG2139|consen 386 PPVEL 390 (445)
T ss_pred CceEE
Confidence 54433
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=3.4e-16 Score=145.28 Aligned_cols=279 Identities=18% Similarity=0.162 Sum_probs=203.8
Q ss_pred ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010748 143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 222 (502)
Q Consensus 143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~ 222 (502)
..+.+..+|+.|+.|+..| +|-...|.... | |..+.+......+.|+ .+.+++|++- ...++
T Consensus 133 Y~~~ytrnGrhlllgGrKG---HlAa~Dw~t~~-----L--~~Ei~v~Etv~Dv~~L-------Hneq~~AVAQ-K~y~y 194 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKG---HLAAFDWVTKK-----L--HFEINVMETVRDVTFL-------HNEQFFAVAQ-KKYVY 194 (545)
T ss_pred eeeeecCCccEEEecCCcc---ceeeeecccce-----e--eeeeehhhhhhhhhhh-------cchHHHHhhh-hceEE
Confidence 4567889999999998777 45555554332 2 2222232333445554 5688888874 57899
Q ss_pred EeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeee
Q 010748 223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 302 (502)
Q Consensus 223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~ 302 (502)
|||-.. .-.+.+..| ..|..|.|.|. -.+|++++..|.++.-|+.+|+.+
T Consensus 195 vYD~~G----------------------------tElHClk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 195 VYDNNG----------------------------TELHCLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLV 244 (545)
T ss_pred EecCCC----------------------------cEEeehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhh
Confidence 998652 222233333 67999999998 568999999999999999999999
Q ss_pred EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748 303 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382 (502)
Q Consensus 303 ~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~ 382 (502)
..+..-.+.+..|+-+|-+ .++-+|..+|+|.+|.............|.++|.++++.+.|. ++++.+.|..|+|||+
T Consensus 245 a~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeee
Confidence 9998888999999999998 7899999999999999999998888899999999999999765 8999999999999999
Q ss_pred CCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE-CCCCCeeEEEEe--cCCCCcEEEEEEcC
Q 010748 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD-LSNNQPSCIASR--NPKAGAVFSVAFSE 459 (502)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd-~~~~~~~~~~~~--~~~~~~v~~~~~sp 459 (502)
|+. ..+.+... ..+...++||..| +| +++....|.||. .-.+.+.+-..+ ....++|..+.|+|
T Consensus 323 R~~---------~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 323 RNF---------YQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred ccc---------cccceeec-CCCcccccccccc--ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence 987 33444443 4567788888743 44 445555799994 322111111111 22245899999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 460 DSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 460 d~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
-.. +|..|...|.-.|.=...|+..
T Consensus 390 ~ED-vLGIGH~~G~tsilVPGsGePN 414 (545)
T KOG1272|consen 390 YED-VLGIGHAGGITSILVPGSGEPN 414 (545)
T ss_pred HHH-eeeccccCCceeEeccCCCCCC
Confidence 776 6777777775555444555543
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.1e-15 Score=141.16 Aligned_cols=183 Identities=16% Similarity=0.234 Sum_probs=146.2
Q ss_pred CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748 279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 358 (502)
...|+.++.||.+.+.+ +.++.-+.+..|.+.+.|-.|+|+| .-|++++.||.|++|.... -..........+|.|+
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEE
Confidence 34788899999999988 6688888899999999999999999 7899999999999998543 2223344567789999
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
+|.|++.+.+++.+ +.+.+=.+... ..+....+|.+-|.++.|++.. .++++|+.|-..+|||....
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n---------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~- 218 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAAN---------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA- 218 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccc---------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc-
Confidence 99999887776654 55666555543 5667889999999999999987 99999999999999998654
Q ss_pred eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 439 ~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
.++....|..+|++++|.|+. +++.++.+ ++++=..+.|
T Consensus 219 --~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R~~~p~~G 257 (737)
T KOG1524|consen 219 --NLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TARFSSPRVG 257 (737)
T ss_pred --ccccCChhccceeeeeecccc--ceeeeeee-eeeecCCCcc
Confidence 367778899999999999994 46666543 5654333333
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.9e-14 Score=131.23 Aligned_cols=213 Identities=16% Similarity=0.190 Sum_probs=170.3
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe----eeEeeccCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEE
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMK 337 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~i~iw 337 (502)
..+.+|..++.... .|++|-.+|.+.+|....+. .+..+..+ ..+..|.-++..+.++++|+.. ..+.+|
T Consensus 103 l~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 103 LGTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred cccccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 34567777776543 78889999999999988442 23334333 5677788888887888889999 899999
Q ss_pred ecCCCCCccc---------eEeecCCeeEEEeCCC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748 338 DARISTHSGF---------KWAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 338 d~~~~~~~~~---------~~~~~~~v~~v~~~~~-~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
|+.+.+.+-. -...+-.++.+.|-+. ..+.|++++.-+.|++||.+.+ .+|+..+.....++
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPI 250 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcc
Confidence 9987632211 1122345778888774 1468999999999999999987 58999999889999
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
+++...|.+ +++++|..-|.+..||++.++. ....+.+..|.|+++..+|.++ +||++|-|..|||+|+.+.+++..
T Consensus 251 s~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 251 SSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred eeeeecCCC-cEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhh
Confidence 999999998 9999999999999999999873 3444788899999999999999 599999999999999999888877
Q ss_pred cccC
Q 010748 488 RFSK 491 (502)
Q Consensus 488 ~~~~ 491 (502)
.|-.
T Consensus 328 vYvK 331 (412)
T KOG3881|consen 328 VYVK 331 (412)
T ss_pred hhhh
Confidence 6643
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.8e-14 Score=135.11 Aligned_cols=286 Identities=15% Similarity=0.173 Sum_probs=191.0
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
-++...-+.+.++|||++|++.+... -.+++|.+..-.. .+-.|- .+-+..+..+ +.|-..++.-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YK--P~ikvydlanLSL---KFERhl----Dae~V~feiL------sDD~SK~v~L 112 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYK--PQIKVYDLANLSL---KFERHL----DAEVVDFEIL------SDDYSKSVFL 112 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccC--CceEEEEccccee---eeeecc----cccceeEEEe------ccchhhheEe
Confidence 35667788999999999998877665 2566666653322 222333 3333333333 4444445555
Q ss_pred cCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEe
Q 010748 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd 295 (502)
..|.+|.+-.-.. ..... .-...-..++++.-.. =|++++....|+-++
T Consensus 113 ~~DR~IefHak~G-------------------------~hy~~-----RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlN 161 (703)
T KOG2321|consen 113 QNDRTIEFHAKYG-------------------------RHYRT-----RIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLN 161 (703)
T ss_pred ecCceeeehhhcC-------------------------eeeee-----ecCcCCccccccCCCc-cEEEeecCcceEEEE
Confidence 5677776643211 00000 0112233455544423 344455556799999
Q ss_pred CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe------ec-----CCeeEEEeCCCC
Q 010748 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA------VA-----ADVESLAWDPHA 364 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~-----~~v~~v~~~~~~ 364 (502)
+..|+.+..|....+.++++..++-. .+|++|+.+|.|-+||.|.......+.. +. ..|+++.|+.+|
T Consensus 162 LEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g 240 (703)
T KOG2321|consen 162 LEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG 240 (703)
T ss_pred ccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc
Confidence 99999999998888999999999988 8999999999999999998765543221 22 239999999864
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
..+++|+..|.|.|||+|.. ...+..-+...-+|..+.|.+.+..--+.......++|||-.++++. ..
T Consensus 241 -L~~aVGts~G~v~iyDLRa~--------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~--as 309 (703)
T KOG2321|consen 241 -LHVAVGTSTGSVLIYDLRAS--------KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM--AS 309 (703)
T ss_pred -eeEEeeccCCcEEEEEcccC--------CceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce--ee
Confidence 57999999999999999987 23333444556789999998864233333344567999999999843 33
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
... ...+..+++-|++. ++.++..++.+..|=+..
T Consensus 310 iEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 310 IEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccc
Confidence 332 34588999999987 688888888777766544
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.4e-14 Score=143.37 Aligned_cols=212 Identities=16% Similarity=0.102 Sum_probs=137.1
Q ss_pred CCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748 204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 280 (502)
Q Consensus 204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 280 (502)
.|||+|+.||.++.+ ..|++||+.++... ....+.+| ...++|+|++..
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------------~l~~~~g~---~~~~~wSPDG~~ 261 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------------VVASFRGH---NGAPAFSPDGSR 261 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------------------------EEecCCCc---cCceeECCCCCE
Confidence 338999999987654 47999999753211 01112233 346899999654
Q ss_pred EEEEEecCCcEEEE--eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748 281 ILASASADKQVKIW--DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 281 ~l~sgs~dg~v~vw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 358 (502)
++++.+.+|.+.|| |+.+++. ..+..+...+.+..|+|++..+++++..+|...||++...........+.. .+.
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~ 338 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSA 338 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCc
Confidence 44444578876555 6665553 456667777889999999944555555788889998765332222222222 457
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
.|+|++. .++..+.++ +.+||+.++. .. .+..+ ....++.|+|++ .+|++++.++.+.+|.+....
T Consensus 339 ~~SpDG~-~ia~~~~~~-i~~~Dl~~g~---------~~-~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 339 QISADGK-TLVMINGDN-VVKQDLTSGS---------TE-VLSST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred cCCCCCC-EEEEEcCCC-EEEEECCCCC---------eE-EecCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECC
Confidence 8999887 455555554 6669998762 11 11111 123567899998 888888889988888764322
Q ss_pred eeEEEEecCCCCcEEEEEEcCC
Q 010748 439 PSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 439 ~~~~~~~~~~~~~v~~~~~spd 460 (502)
......+..|.+.+...+|+|-
T Consensus 405 G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEccCCCCCCCCcccCCC
Confidence 1246666677788889999985
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=3.1e-14 Score=142.59 Aligned_cols=203 Identities=15% Similarity=0.134 Sum_probs=135.5
Q ss_pred cCcccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEE-EeCCCcEEE
Q 010748 263 GSHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLS-GSFDRSVVM 336 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s-~s~dg~i~i 336 (502)
..|...+.+.+|+|++. .|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|++ +.|+. .+.+|.+.|
T Consensus 200 t~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG-~~La~~~~~~g~~~I 274 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDG-SRLAFASSKDGVLNI 274 (429)
T ss_pred ccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCC-CEEEEEEecCCcEEE
Confidence 35778899999999954 66666543 3699999988753 3334443 3468999999 55554 457887666
Q ss_pred E--ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748 337 K--DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 337 w--d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
| |+.++.... ...+...+....|+|++..+++++..+|...+|++.... .....+ .+.. .++.|+|
T Consensus 275 y~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~Sp 342 (429)
T PRK01742 275 YVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--------GGASLV-GGRG--YSAQISA 342 (429)
T ss_pred EEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCeEEe-cCCC--CCccCCC
Confidence 5 555544322 334455678899999988666666678888888876531 112222 3333 4578999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC--CCccccccc
Q 010748 415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL--SDAGISNRF 489 (502)
Q Consensus 415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~--~~~~~~~~~ 489 (502)
++ ..|+.++.++ +.+||+.+++...+. ... ...++.|+|+|++ |++++.+|.+.+|.+. ++..++++.
T Consensus 343 DG-~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 343 DG-KTLVMINGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIM-IIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CC-CEEEEEcCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCceEEcc
Confidence 98 7777777655 666999888743222 111 2356789999995 7777788888888763 455555443
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=4e-14 Score=145.73 Aligned_cols=311 Identities=14% Similarity=0.171 Sum_probs=192.2
Q ss_pred CCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 137 EDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
+|...+..++.++.. .++++|+.+| +++||....-.+........-... ..+...++.. -+.++.+|+
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DG---tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-------~~~~~~~Av 1115 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDG---TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-------CGNGDQFAV 1115 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCc---eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe-------ccCCCeEEE
Confidence 567777788877665 9999999887 789998876554211111111111 1222233333 257999999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc-EEEEEecCCcEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-ILASASADKQVKI 293 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~sgs~dg~v~v 293 (502)
|+.||.|++..++.......... .............|...+|....+. .|+.+..-+.|..
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~------------------~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVAT------------------QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred EcCCCeEEEEEccccccccceee------------------eeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence 99999999999986321111000 0001111112223444455443333 7888888899999
Q ss_pred EeCCCCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--ecCCeeEEEeCCCCC--CE
Q 010748 294 WDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHAE--HS 367 (502)
Q Consensus 294 wd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~--~~ 367 (502)
||++......+++ ...+.|++++.+|.+ +.+++|+..|.+.+||+|-+..+. .|. +..+++.+..+|..+ ..
T Consensus 1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~-sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPIL-SWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred ecchhhhhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceee-cccCcccCCcceEEeeccCCCCce
Confidence 9998776655553 235789999999999 899999999999999999776554 443 456788887777543 33
Q ss_pred EE-EEe-CCCcEEEEECCCCCCCCCCCC--Cccc--eEEe------ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748 368 FV-VSL-EDGTIKGFDIRTAKSDPDSTS--QQSS--FTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435 (502)
Q Consensus 368 ~~-~~~-~dg~v~i~d~~~~~~~~~~~~--~~~~--~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~ 435 (502)
.+ +|. ..+.|.+|++.++........ ..+. .... .+.-......+. .+..++++|+.|..|+.||..
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCCceeeecCCccceeeccCC
Confidence 33 444 578899999998743111000 0000 0000 011111222222 234799999999999999975
Q ss_pred CCCee------------------------------------------------------EEEEecCCCCcEEEEEEcCCC
Q 010748 436 NNQPS------------------------------------------------------CIASRNPKAGAVFSVAFSEDS 461 (502)
Q Consensus 436 ~~~~~------------------------------------------------------~~~~~~~~~~~v~~~~~spd~ 461 (502)
..... .......|..+|+.+++....
T Consensus 1335 ~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~ 1414 (1431)
T KOG1240|consen 1335 RPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSE 1414 (1431)
T ss_pred CcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccC
Confidence 42110 000012356788888887666
Q ss_pred CcEEEEEeCCCcEEEEE
Q 010748 462 PFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 462 ~~ll~sg~~dg~i~vwd 478 (502)
.-+|++++.+|.|+||.
T Consensus 1415 q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1415 QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccEEEEecCCCeeeecC
Confidence 55799999999999994
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.8e-13 Score=136.97 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=99.6
Q ss_pred cCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC--C--eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748 263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd 338 (502)
..|+..++|.+++|. +.++|+|..||.|.+|.--. . ...+.+.-|...|.++.|+++| .+|++|+..|.+.+|.
T Consensus 202 ~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 202 VHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEe
Confidence 357778999999999 56999999999999996332 1 2334566789999999999999 8999999999999999
Q ss_pred cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~ 385 (502)
+.+++ ...+....++|..+.++|++. +.++...|+.|.+....+.
T Consensus 280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 280 LETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccch
Confidence 99988 555778899999999999876 6777778999998877443
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=2.7e-14 Score=147.02 Aligned_cols=224 Identities=19% Similarity=0.268 Sum_probs=165.2
Q ss_pred ccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-------eeeEeeccCCCCeEEEEEcCCCCcEEEEE
Q 010748 256 SSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 256 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 328 (502)
......+..|...|..++.++....+++|||.||+|++|++..- ++..++......+.++...+.+ +.++++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVS 1116 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEE
Confidence 44556677899999999999987789999999999999998631 3344454457789999999988 889999
Q ss_pred eCCCcEEEEecCCCCCccc--e------EeecCCe-eEEEeCCCCC-CEEEEEeCCCcEEEEECCCCCCCCCCCCCccce
Q 010748 329 SFDRSVVMKDARISTHSGF--K------WAVAADV-ESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 398 (502)
Q Consensus 329 s~dg~i~iwd~~~~~~~~~--~------~~~~~~v-~~v~~~~~~~-~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 398 (502)
+.||.|++.++........ . ....+.+ ..-+|..... ..++.++..+.|..||+++. ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~---------~~~w 1187 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR---------HDAW 1187 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh---------hhHH
Confidence 9999999999875211110 0 0112223 3334443333 37888999999999999987 3333
Q ss_pred EE--eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCC---CcEEEEEe-CCC
Q 010748 399 TL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGG-SKG 472 (502)
Q Consensus 399 ~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~---~~ll~sg~-~dg 472 (502)
++ ....+.|++++.+|.+ .++++|+..|.+.+||++-+.+.+...++.+ .+|+.+..+|-. .+.+++|. ..+
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred hhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCC
Confidence 33 3345789999999998 8999999999999999999887776666554 788888887654 33344444 567
Q ss_pred cEEEEECCCCccccccccC
Q 010748 473 KLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~ 491 (502)
.|.+|++.++.+-...+..
T Consensus 1266 evs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred ceeeeecccCcceEEEEcC
Confidence 8999999999776555544
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=5.3e-15 Score=139.77 Aligned_cols=204 Identities=14% Similarity=0.182 Sum_probs=142.3
Q ss_pred cccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEee
Q 010748 146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 225 (502)
Q Consensus 146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwd 225 (502)
.=.|.+--|++|-..+ .|+.++........|+.........-.+|+.|++- +...++++-.+|.+++||
T Consensus 180 ~a~~~g~dllIGf~tG-----qvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg------~~~~Fl~a~~sGnlyly~ 248 (636)
T KOG2394|consen 180 TATPKGLDLLIGFTTG-----QVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG------SDSLFLVAHASGNLYLYD 248 (636)
T ss_pred ccCCCCcceEEeeccC-----ceEEecchhhHHHHhhhhcccccccceEEEEEEeC------CCceEEEEEecCceEEee
Confidence 3356777888888777 44444333322224454444444566799999843 566777777889999998
Q ss_pred CCCCCCcCc-ceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEe
Q 010748 226 LDVIDEVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 304 (502)
Q Consensus 226 l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~ 304 (502)
......... ....-.....-+.-..+.++...+...+.--...|+.++|+|+ +.+||+.|.||.++|+|..+..++..
T Consensus 249 ~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 249 KEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred ccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHH
Confidence 743322111 1100000000000001111112334444444569999999998 56999999999999999999988888
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 305 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
++..-+...|++|+|+| +++++|+.|-.|.||.+...+.+..-.+|.+.|..|+|+|
T Consensus 328 mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 88778899999999999 9999999999999999999888887789999999999997
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=2e-12 Score=117.40 Aligned_cols=234 Identities=15% Similarity=0.233 Sum_probs=164.5
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME- 218 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d- 218 (502)
..+..+.|..+..+|..|+.+| .++|..+.-.. +.|.. ..+... ++-+ | ...++|..+.+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k-----~~~~~--~~~~~I-vEmL-----F--SSSLvaiV~~~q 66 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG----YKIFSCSPFEK-----CFSKD--TEGVSI-VEML-----F--SSSLVAIVSIKQ 66 (391)
T ss_pred cceeeeeeccceeEEEccCCCc----eeEEecCchHH-----hhccc--CCCeEE-EEee-----c--ccceeEEEecCC
Confidence 3456667888999999998886 57776654432 11111 111111 1111 1 34566655544
Q ss_pred -CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
..+++.++... ...........|.++.++.+ .|+++-.+ .|.|||++
T Consensus 67 pr~Lkv~~~Kk~----------------------------~~ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~ 114 (391)
T KOG2110|consen 67 PRKLKVVHFKKK----------------------------TTICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIK 114 (391)
T ss_pred CceEEEEEcccC----------------------------ceEEEEecCCceEEEEEccc---eEEEEEcc-cEEEEecc
Confidence 34666665311 11111124578999999976 56666664 49999999
Q ss_pred CCeeeEeecc---CCCCeEEEEEcCCCCcEEEEE--eCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe
Q 010748 298 AGKCNLTLEH---HTDKVQAVAWNHHSPQILLSG--SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 298 ~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~ 372 (502)
+.+.++++.. +...+.++.+++.+ .+|+-- ...|.|.+||+.+-+.......|.+.+.+++|+++|. ++++++
T Consensus 115 ~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATAS 192 (391)
T KOG2110|consen 115 DMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATAS 192 (391)
T ss_pred cceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEec
Confidence 9999998853 44557777777766 555542 2368999999999888887889999999999999876 899999
Q ss_pred CCCc-EEEEECCCCCCCCCCCCCccceEEeccC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 373 EDGT-IKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 373 ~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
+.|+ ||+|.+.++ ..++.+.... ..|.+++|+|++ .+|++.|..++|++|.+..
T Consensus 193 eKGTVIRVf~v~~G---------~kl~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEG---------QKLYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cCceEEEEEEcCCc---------cEeeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecc
Confidence 9996 799999887 5666665433 468899999998 8999999999999998754
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8.1e-15 Score=135.08 Aligned_cols=192 Identities=19% Similarity=0.277 Sum_probs=145.4
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+.+|..|++|+.||++|||+..... .......|...|.+|.|+|+ +.+|++-
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~~---------------------------t~l~e~~~~~eV~DL~FS~d-gk~lasi 204 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSML---------------------------TILEEIAHHAEVKDLDFSPD-GKFLASI 204 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcch---------------------------hhhhhHhhcCccccceeCCC-CcEEEEe
Confidence 7899999999999999999976532 22234478999999999999 6699999
Q ss_pred ecCCcEEEEeCCCCeeeEeec--cCCCCeEEEEEcCCC--Cc-EEEEE-eCCCcEEEEecCCCCCc-----cceEeecCC
Q 010748 286 SADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHS--PQ-ILLSG-SFDRSVVMKDARISTHS-----GFKWAVAAD 354 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~--~~-~l~s~-s~dg~i~iwd~~~~~~~-----~~~~~~~~~ 354 (502)
+.| ..+||+++++.++.... .-......+.|+.++ +. ++++. ..-+.|+.|++...... .........
T Consensus 205 g~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 205 GAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 999 89999999997766654 223455667777654 12 33332 33467777776543321 111223457
Q ss_pred eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748 355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
|.+++.+++|. +++.|+.+|.|.+++..+. ....+...+|...|+.+.|+|+. +++++.+.+....|..+
T Consensus 284 iSsl~VS~dGk-f~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 284 ISSLAVSDDGK-FLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKL 353 (398)
T ss_pred ceeEEEcCCCc-EEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEE
Confidence 99999999876 8999999999999999887 34455567899999999999997 89999999998888876
Q ss_pred CC
Q 010748 435 SN 436 (502)
Q Consensus 435 ~~ 436 (502)
.-
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 54
No 219
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=1.5e-14 Score=141.47 Aligned_cols=296 Identities=19% Similarity=0.311 Sum_probs=210.6
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d 218 (502)
+..+.++.++|.|+-+|.|+.. .+|+.+......+..+.||. .|-....+.|.+ +|...+-++.+..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~-----h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSP-----HPAKPYWIVSTSN 90 (1081)
T ss_pred cCcccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--Ccchhcceeccc-----CCCCceeEEecCc
Confidence 4578999999999999999855 56666666666668888884 233334455532 2345555666556
Q ss_pred CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~ 298 (502)
..-.||++... ....+...+.+|+.+|+.+.|+|+.+.+|++++.|-.|..||+++
T Consensus 91 qkaiiwnlA~s------------------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 91 QKAIIWNLAKS------------------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred chhhhhhhhcC------------------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 66669998632 235566677899999999999999999999999999999999987
Q ss_pred C-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc-eEeecCCeeEEEeCCCCCCEEEEEeCCCc
Q 010748 299 G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 299 ~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~~dg~ 376 (502)
. .++..+..-......++|+...++ +++.+..+.|++||+|.+..+.. ..++...+..+.|+..-...+.+++.||+
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 6 455555544556778999998855 55567788999999998776543 33466677788887765557889999999
Q ss_pred EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC-cEEE---------EECCCCCeeEEEEec
Q 010748 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-MVKL---------WDLSNNQPSCIASRN 446 (502)
Q Consensus 377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg-~i~v---------wd~~~~~~~~~~~~~ 446 (502)
|++||..+.. ...........+|..-++.|.|..+++--...+ .+.+ |+..++ +..+..+.
T Consensus 226 vkfw~y~kSt--------~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~ 296 (1081)
T KOG0309|consen 226 VKFWDYSKST--------TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFV 296 (1081)
T ss_pred eeeecccccc--------cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC-Ccceeeec
Confidence 9999987652 222233344567777777777654444322222 3333 333332 34788999
Q ss_pred CCCCcEEEEEEcCC---------CCcEEEEEeCCCcEEEEECCC
Q 010748 447 PKAGAVFSVAFSED---------SPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 447 ~~~~~v~~~~~spd---------~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+|...|....|... ..|-|+|-+.|..+++|-+.+
T Consensus 297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 99988877766432 246799999999999999865
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.8e-13 Score=123.72 Aligned_cols=214 Identities=13% Similarity=0.155 Sum_probs=160.1
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
...|++|..+|.+.+|....++.... +...+..+ ..+..+.-++...+++|+|+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss-----------------------~l~~la~g-~g~~~~r~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSS-----------------------KLIKLATG-PGLYDVRQTDTDPYIVATGGKE 170 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccc-----------------------cceeeecC-CceeeeccCCCCCceEecCchh
Confidence 44677778899999999875442210 01111112 5677777777778899999999
Q ss_pred --CcEEEEeCCCCeeeEeeccC---------CCCeEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCCccceEe-ecCC
Q 010748 289 --KQVKIWDVAAGKCNLTLEHH---------TDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSGFKWA-VAAD 354 (502)
Q Consensus 289 --g~v~vwd~~~~~~~~~~~~h---------~~~v~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~ 354 (502)
..+++||+.+.+.+.+-+.- .-.++.+.|-+. . +.|++++.-+.+++||.+.++.+...+. ...+
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENP 249 (412)
T ss_pred cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence 88999999988665543321 124678888876 4 7899999999999999998776654443 4678
Q ss_pred eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748 355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 355 v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
+.++...|.+. ++++|..-|.+..||+|.+ ......+.+..+.|++|..+|.. .+|++||-|..|||+|+
T Consensus 250 is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~--------kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 250 ISSTGLTPSGN-FIYTGNTKGQLAKFDLRGG--------KLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDI 319 (412)
T ss_pred ceeeeecCCCc-EEEEecccchhheecccCc--------eeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeec
Confidence 99999999764 8999999999999999987 23444578889999999999987 89999999999999999
Q ss_pred CCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748 435 SNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 435 ~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
.+.++...... ...++++.+.++
T Consensus 320 ktrkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 320 KTRKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred ccchhhhhhhh---hccccEEEecCC
Confidence 99663222222 244666666554
No 221
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=7.2e-12 Score=121.74 Aligned_cols=279 Identities=14% Similarity=0.164 Sum_probs=175.1
Q ss_pred cceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC----CCcEEEeeCCCC-CCcCccee
Q 010748 163 VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVI-DEVQPHVI 237 (502)
Q Consensus 163 ~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~----dg~I~iwdl~~~-~~~~~~~~ 237 (502)
...|.++.++...+ .|...+......-|..+++ +|++++|.+... .|.|..|.+... ..+..
T Consensus 12 ~~gI~~~~~d~~~g---~l~~~~~~~~~~~Ps~l~~-------~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~--- 78 (345)
T PF10282_consen 12 GGGIYVFRFDEETG---TLTLVQTVAEGENPSWLAV-------SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL--- 78 (345)
T ss_dssp STEEEEEEEETTTT---EEEEEEEEEESSSECCEEE--------TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE---
T ss_pred CCcEEEEEEcCCCC---CceEeeeecCCCCCceEEE-------EeCCCEEEEEEccccCCCCEEEEEECCCcceeEE---
Confidence 34677788877766 6665554444455555554 789999988766 478999988642 11111
Q ss_pred cCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC-CeeeEe---ec-------
Q 010748 238 LGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLT---LE------- 306 (502)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-~~~~~~---~~------- 306 (502)
.............++++|+++.++++...+|+|.++++.. +..... +.
T Consensus 79 ---------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~ 137 (345)
T PF10282_consen 79 ---------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPN 137 (345)
T ss_dssp ---------------------EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESS
T ss_pred ---------------------eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCc
Confidence 0011112345567899999664444445689999999986 433222 21
Q ss_pred ---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-cc----ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEE
Q 010748 307 ---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 307 ---~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~----~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~ 378 (502)
.......++.|+|++..++++.-....|.+|++..... .. .........+.+.|+|++..++++.-.++.|.
T Consensus 138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 12355789999999944444444456899999987652 11 12234567899999999886667777788999
Q ss_pred EEECCCCCCCCCCCCCccceEEecc------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC--CCCeeEEEEecCCCC
Q 010748 379 GFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NNQPSCIASRNPKAG 450 (502)
Q Consensus 379 i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~--~~~~~~~~~~~~~~~ 450 (502)
+|++...... ...+..+... ......|+++|++..+.++....++|.+|++. ++.+..+........
T Consensus 218 v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~ 292 (345)
T PF10282_consen 218 VFDYDPSDGS-----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK 292 (345)
T ss_dssp EEEEETTTTE-----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS
T ss_pred EEeecccCCc-----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC
Confidence 9998832110 1222222211 12578899999994445555567889999993 355555555544445
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 451 ~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
..+.++++|+|++++++...++.|.+|++.
T Consensus 293 ~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 589999999999877776677899999874
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=7.8e-12 Score=121.40 Aligned_cols=252 Identities=13% Similarity=0.105 Sum_probs=158.0
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|+|+++.+++.||.|.++|+.+.+.+.... -.....+++++++|+.+++++
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~----------------------------~G~~~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLATGKVVATIK----------------------------VGGNPRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----------------------------SSEEEEEEE--TTTEEEEEE
T ss_pred cCCCCEEEEEcCCCeEEEEECCcccEEEEEe----------------------------cCCCcceEEEcCCCCEEEEEe
Confidence 8999999999999999999998654332211 123467899999977555566
Q ss_pred ecCCcEEEEeCCCCeeeEeeccC-------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeE
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVES 357 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~ 357 (502)
...+.|.++|..+.+.++.+... ...+.++..+|..+.++++.-..+.|.+.|........ ...........
T Consensus 97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence 78999999999999998887532 34678888888884455555556888888887764433 23345566788
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC----------------------------------------------CC
Q 010748 358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP----------------------------------------------DS 391 (502)
Q Consensus 358 v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~----------------------------------------------~~ 391 (502)
..|+|++.+++++......|.++|..+..... ..
T Consensus 177 ~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~ 256 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD 256 (369)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchh
Confidence 99999887666666667778888876653200 00
Q ss_pred CCCccceEEeccCCCeeEEEEcCCCCCEEEEE----eCCCcEEEEECCCCCeeEEEEecC-CCCcEEEEEEcCCCCcEEE
Q 010748 392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATG----STDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLA 466 (502)
Q Consensus 392 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~----s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~ll~ 466 (502)
...+.+..+.....+ .-+..+|++ .++.+. ...++|.++|..+.+ .+..+.. ....+..+.|+++|+++.+
T Consensus 257 ~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 257 YAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp TBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred hcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEEE
Confidence 111222333333333 556678988 666666 445889999999885 3344332 2235899999999998777
Q ss_pred EEeCCC-cEEEEECCCCccccccc
Q 010748 467 IGGSKG-KLEIWDTLSDAGISNRF 489 (502)
Q Consensus 467 sg~~dg-~i~vwd~~~~~~~~~~~ 489 (502)
+....+ .|.|||..+.+.+.++.
T Consensus 333 S~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 333 SVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEecCCCEEEEEECCCcEEEEEEE
Confidence 766665 89999999999887765
No 223
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=2.7e-14 Score=127.36 Aligned_cols=231 Identities=17% Similarity=0.250 Sum_probs=163.4
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|||+|+++|+.+.- .+.|-|..+.+..+-+. --+.|.-|.|..+..++|..
T Consensus 16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~----------------------------cldki~yieW~ads~~ilC~ 66 (447)
T KOG4497|consen 16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFL----------------------------CLDKIVYIEWKADSCHILCV 66 (447)
T ss_pred ECCCCCeeeeeeee-EEEEeccchhhHHHHHH----------------------------HHHHhhheeeeccceeeeee
Confidence 48999999999875 67787876544333221 13567788999887777888
Q ss_pred EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC
Q 010748 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 364 (502)
...++.|.+|++....-...+.....++.+++|+|+|..+|.+...+-.|.+|.+.+.+.... ......+..++|+|++
T Consensus 67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDG 145 (447)
T ss_pred eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCC
Confidence 899999999999999888888888899999999999988999999999999999998776542 2234556889999988
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. +.+..+.-.....+.+..-+ ....+..+...+-..+.+.|+|+| ..|+ |||---.- .+..
T Consensus 146 ~-f~ai~sRrDCkdyv~i~~c~------~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley--kv~a 206 (447)
T KOG4497|consen 146 Q-FCAILSRRDCKDYVQISSCK------AWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY--KVYA 206 (447)
T ss_pred c-eeeeeecccHHHHHHHHhhH------HHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--eeee
Confidence 7 44444433222222222110 023445555566778999999998 5554 56543221 1112
Q ss_pred ecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~ 486 (502)
.. ..-.+..++|+|.+++ |+.|+.|+.+||.+--+-+...
T Consensus 207 Ye-~~lG~k~v~wsP~~qf-lavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 207 YE-RGLGLKFVEWSPCNQF-LAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred ee-eccceeEEEeccccce-EEeeccchhhhhhceeeeeehh
Confidence 21 1235888999999994 9999999999997766655543
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=5.5e-13 Score=117.64 Aligned_cols=156 Identities=14% Similarity=0.257 Sum_probs=108.3
Q ss_pred EEEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCccceE--eecCCeeEEEeCCCCCCEEEE-EeCCCcEEEE
Q 010748 313 QAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVV-SLEDGTIKGF 380 (502)
Q Consensus 313 ~~l~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~-~~~dg~v~i~ 380 (502)
..+.|++.|..+++.... -+...+|.++......... ...++|..++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 468899999555555541 2346666665544333333 334579999999998755444 4567899999
Q ss_pred ECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCeeEEEEecCCCCcEEEEEE
Q 010748 381 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457 (502)
Q Consensus 381 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 457 (502)
|++. ..+..+. ...+..+.|+|+| ++|++++. .|.|.+||+++.+ .+.... | ..++.++|
T Consensus 89 d~~~----------~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~-~~~t~~~W 151 (194)
T PF08662_consen 89 DVKG----------KKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-H-SDATDVEW 151 (194)
T ss_pred cCcc----------cEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE--Eeeccc-c-CcEEEEEE
Confidence 9972 4555553 5678899999998 88888765 3669999999766 343333 3 34789999
Q ss_pred cCCCCcEEEEEeC-----CCcEEEEECCCCcccc
Q 010748 458 SEDSPFVLAIGGS-----KGKLEIWDTLSDAGIS 486 (502)
Q Consensus 458 spd~~~ll~sg~~-----dg~i~vwd~~~~~~~~ 486 (502)
+|+|+|++++.+. |+.++||++. |+.+.
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 9999985554443 7889999985 45543
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=3.6e-12 Score=127.41 Aligned_cols=206 Identities=11% Similarity=0.090 Sum_probs=129.9
Q ss_pred CcccceeeEEeccCCCcEEEEEe---cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEe
Q 010748 264 SHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs---~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd 338 (502)
.+...+.+.+|+|+|. .|+..+ ....|.+|++.+++... +....+.+....|+|+|..++++.+.+| .|.+||
T Consensus 196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 3567899999999965 555443 23579999998875432 2223334556899999954544555555 488899
Q ss_pred cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEE--ECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... .......+....|+|++..+++++...|...+| ++.++ ....+..+........|+|+|
T Consensus 274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG----------APQRITWEGSQNQDADVSSDG 342 (429)
T ss_pred CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----------CeEEeecCCCCccCEEECCCC
Confidence 98765433 233345678899999987555555555555555 55443 223344444556778999998
Q ss_pred CCEEEEEeC-C--CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc---EEEEECCCCccccccc
Q 010748 417 PNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK---LEIWDTLSDAGISNRF 489 (502)
Q Consensus 417 ~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~---i~vwd~~~~~~~~~~~ 489 (502)
.+|+..+. + ..|.+||+.++....+.. . .......|+|||++ |+.++.++. +.++++. +...+++.
T Consensus 343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~--~--~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~-G~~~~~l~ 414 (429)
T PRK03629 343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLTD--T--FLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTD-GRFKARLP 414 (429)
T ss_pred -CEEEEEEccCCCceEEEEECCCCCeEEeCC--C--CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-CCCeEECc
Confidence 66655544 3 358889998887433321 1 22346789999996 555555543 6777773 44444443
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.7e-12 Score=129.92 Aligned_cols=200 Identities=16% Similarity=0.166 Sum_probs=128.2
Q ss_pred CcccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
.+...+.+.+|+|++. .|+..+.. ..|.+||+.+++... +....+.+.+..|+|++..++++.+.+|...+|.+.
T Consensus 193 ~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 4667899999999954 66655532 359999999886543 333345567899999995555677888887777553
Q ss_pred --CCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748 341 --ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 341 --~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
...... ...+........|+|++..+++++...|...+|.+.... .....+..+.......+|+|+| +
T Consensus 271 ~~~~~~~~-lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--------g~~~~lt~~g~~~~~~~~SpDG-~ 340 (427)
T PRK02889 271 ADGSGLRR-LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--------GAAQRVTFTGSYNTSPRISPDG-K 340 (427)
T ss_pred CCCCCcEE-CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--------CceEEEecCCCCcCceEECCCC-C
Confidence 333222 223344456788999988666666556777777654321 1122222233344567899998 6
Q ss_pred EEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEEC
Q 010748 419 LLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDT 479 (502)
Q Consensus 419 ~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~--i~vwd~ 479 (502)
+|+..+.++ .|.+||+.+++...+. .. .......|+|++++++++....|. +.+.++
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt---~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTALT---DT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEcc---CC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 776666544 5999999887743322 11 234678999999976666555554 455555
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=5.1e-12 Score=126.32 Aligned_cols=209 Identities=16% Similarity=0.048 Sum_probs=132.5
Q ss_pred CCCCCEEEEec---CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748 206 REKGNFMAVGS---MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 206 s~~~~~la~g~---~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
||+|+.||..+ ....|.+|++.++... .... ....+..++|+|++..++
T Consensus 207 SPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------------------~l~~---~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 207 SPDGSKLAYVTFESGRSALVIQTLANGAVR-------------------------QVAS---FPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred cCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EccC---CCCCcCCeEECCCCCEEE
Confidence 89999998754 2457999998753211 0011 122345689999976555
Q ss_pred EEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEE--ecCCCCCccceEeecCCeeE
Q 010748 283 ASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMK--DARISTHSGFKWAVAADVES 357 (502)
Q Consensus 283 ~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~ 357 (502)
++.+.+| .|.+||+.+++... +..+...+....|+|++ +.|+.++ .++...+| ++.++.... ..........
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~ 335 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD 335 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence 5555555 48899998886644 43345567889999999 5555444 44555555 555543322 2223344567
Q ss_pred EEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc---EEEE
Q 010748 358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM---VKLW 432 (502)
Q Consensus 358 v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~---i~vw 432 (502)
..|+|++..+++++..++ .|.+||+.++. ...+.. ........|+|+| .+|+.++.++. +.++
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEE
Confidence 899999875555554443 58888987652 222221 1234567899998 77777777654 6777
Q ss_pred ECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748 433 DLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
++.... ...+..|.+.+...+|+|-
T Consensus 404 ~~~G~~---~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 404 STDGRF---KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ECCCCC---eEECccCCCCcCCcccCCC
Confidence 875544 3445567788888999873
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.5e-12 Score=129.25 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=135.6
Q ss_pred CcccceeeEEeccCCCcEEEEEec---CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEe
Q 010748 264 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--i~iwd 338 (502)
.|...+.+.+|+|++. .|+..+. +..|.+||+.+++.. .+..+.+.+.+..|+|+|..++++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 5777899999999955 5655543 468999999888653 444566677889999999555667777665 66778
Q ss_pred cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... ...+........|+|++..+++++..+| .|+++|+... ....+..+...+....|+|++
T Consensus 277 ~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 277 LRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS----------NPRRISFGGGRYSTPVWSPRG 345 (435)
T ss_pred CCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC----------CeEEeecCCCcccCeEECCCC
Confidence 87765433 3334445677899999875555554554 5777787653 233444445567778999998
Q ss_pred CCEEEEEeCC---CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCcc
Q 010748 417 PNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDAG 484 (502)
Q Consensus 417 ~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~~ 484 (502)
..|+..+.+ ..|.+|++..+... ... ....+....|+|+|++++.++... ..|.++++..+..
T Consensus 346 -~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 346 -DLIAFTKQGGGQFSIGVMKPDGSGER-ILT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -CEEEEEEcCCCceEEEEEECCCCceE-ecc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 666655443 35888898665422 222 122467889999999755554433 2578888865543
No 229
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=4.2e-13 Score=116.36 Aligned_cols=159 Identities=22% Similarity=0.296 Sum_probs=126.8
Q ss_pred CcccceeeEEeccCC--CcEEEEEecCCcEEEEeCCCCe----------eeEeeccCCCCeEEEEEcCCCCcEEEEEeCC
Q 010748 264 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAGK----------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~--~~~l~sgs~dg~v~vwd~~~~~----------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d 331 (502)
+..+.++|..|.-.. .-+|++|-.+|.|.+||+.++. .......|..+|.++.|.+.- ..=++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCcc
Confidence 455778888864331 3367788899999999999873 333445689999999998765 556788888
Q ss_pred CcEEEEecCCCC--Cc--cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748 332 RSVVMKDARIST--HS--GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 332 g~i~iwd~~~~~--~~--~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
..+..|.+.... .. ....-....+..+...|+++ ++++++-|+.|++|..++. .++..+.-|...|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl---------~pLAVLkyHsagv 296 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGV 296 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC---------Cchhhhhhhhcce
Confidence 889999886542 21 11222345688899999865 8999999999999999997 8888999999999
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748 408 CTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
++++|+|+. .++|+++.|++|.+|++
T Consensus 297 n~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCC-chhhhccCCceEEeeec
Confidence 999999987 89999999999999986
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.4e-12 Score=127.31 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=130.4
Q ss_pred CcccceeeEEeccCCCcEEEEEec---CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEe
Q 010748 264 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd 338 (502)
.|...+.+.+|+|++. .|+.++. ...|.+||+.+++... +..+.+...+..|+|++..++++.+.+| .|.+||
T Consensus 201 ~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 201 RSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 4667899999999955 6666653 3469999998876533 3334455568899999955556666666 589999
Q ss_pred cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... ...+.......+|+|++..+++++...|. |+++++.++ . ...+..+......++|+|++
T Consensus 279 ~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---------~-~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 279 LGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---------S-AERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-eEEeecCCCCccCEEECCCC
Confidence 98766433 23333445678999998755555555565 666666554 1 22232333445578999998
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEECCC
Q 010748 417 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLS 481 (502)
Q Consensus 417 ~~~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vwd~~~ 481 (502)
+.|+..+.++ .|.+||+.+++...+ . +........|+|+|++++++.... +.|.++++..
T Consensus 348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~~L---t-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 348 -KKIAMVHGSGGQYRIAVMDLSTGSVRTL---T-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -CEEEEEECCCCceeEEEEECCCCCeEEC---C-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 6666554332 599999988774322 2 222345679999999755555433 3577777744
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=7.8e-12 Score=125.54 Aligned_cols=211 Identities=15% Similarity=0.098 Sum_probs=131.9
Q ss_pred CCCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748 203 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 203 ~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
+.|+|+|+.|+..+.. ..|++|++.++... .+..+.....+++|+|++.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----------------------------LVASFRGINGAPSFSPDGR 260 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----------------------------EeccCCCCccCceECCCCC
Confidence 3448999999987643 46999998753211 0112233445789999977
Q ss_pred cEEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-CCCc--EEEEecCCCCCccceEeecCC
Q 010748 280 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRS--VVMKDARISTHSGFKWAVAAD 354 (502)
Q Consensus 280 ~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~ 354 (502)
.++++.+.+| .|++||+.+++. ..+..+.......+|+|++ +.|+.++ .+|. |.++++.++...... .....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeEEee-cCCCC
Confidence 6666767666 599999988765 4455565566788999999 5555444 4555 556666555433222 22334
Q ss_pred eeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC---CcE
Q 010748 355 VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD---KMV 429 (502)
Q Consensus 355 v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d---g~i 429 (502)
....+|+|++..++++...++ .|.+||+.++. . ..+. +........|+|++ ++|+..+.+ +.|
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~-~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L 405 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---------V-RTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVL 405 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---------e-EECC-CCCCCCCceECCCC-CEEEEEEecCCceEE
Confidence 557899999875444444333 58999987652 1 1222 23345567999998 655554442 357
Q ss_pred EEEECCCCCeeEEEEecCCCCcEEEEEEcC
Q 010748 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp 459 (502)
.++++.... ...+..+.+.+...+|+|
T Consensus 406 ~~~~~~g~~---~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTDGRV---RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEECCCCc---eEEcccCCCCCCCCccCC
Confidence 788886543 333333456677778876
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=1.4e-11 Score=108.63 Aligned_cols=244 Identities=15% Similarity=0.139 Sum_probs=169.0
Q ss_pred CCC-EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 208 KGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 208 ~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
+|. .|+.+-..|.|.++..+.....-.+.-+. ...-......++.|++. +..++++-
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls---------------------~~ki~~~~~lslD~~~~-~~~i~vs~ 140 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS---------------------SKKISVVEALSLDISTS-GTKIFVSD 140 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccc---------------------hhhhhheeeeEEEeecc-CceEEEEc
Confidence 455 56677778999999875322211111000 00001114568889988 55788888
Q ss_pred cCCcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc--eEeecCCeeEEEeCC
Q 010748 287 ADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDP 362 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~ 362 (502)
.+|.+.+-+...... ++.++.|.-.+....|+...++++++|+.|+.+..||+|.+..... ...|...|.++.-+|
T Consensus 141 s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~ 220 (339)
T KOG0280|consen 141 SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP 220 (339)
T ss_pred CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCC
Confidence 889999766555543 3478899999999999999989999999999999999996553221 335788999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee--
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS-- 440 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~-- 440 (502)
..+.++++|+-|-.|++||.|+. .++++.-. -.+.|..+.++|.....|+.++.-+-.+|-++..+...
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm--------~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~ 291 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNM--------GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQ 291 (339)
T ss_pred CCCceEEEeccccceeeeehhcc--------cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchh
Confidence 88889999999999999999976 35555443 34889999999964333444444444788887765533
Q ss_pred -EEEEecCCCCcEEEEEEcCCCCcEEEEEe-CCCcEE-EEECCCCc
Q 010748 441 -CIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLE-IWDTLSDA 483 (502)
Q Consensus 441 -~~~~~~~~~~~v~~~~~spd~~~ll~sg~-~dg~i~-vwd~~~~~ 483 (502)
.......|.+-+....|..... +|||++ .|..++ +|-..++.
T Consensus 292 ~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 292 IVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred eeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccCC
Confidence 4455566777777777855544 477754 456644 77665554
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=4.6e-12 Score=113.95 Aligned_cols=295 Identities=15% Similarity=0.214 Sum_probs=179.6
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC--CCee---eeeccc--------cCCCcceeeeecCCCCC
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLY---VHHHII--------IPAFPLCMAWLDCPLKD 205 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~--~~l~---~~~~~~--------~~~~~~~~~~~~~~~~~ 205 (502)
.+-|.++.|..+|.+|++|...| +|-.|....... -.++ ..|+.. +......+.|+.-
T Consensus 25 adiis~vef~~~Ge~LatGdkgG-----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~---- 95 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGG-----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD---- 95 (433)
T ss_pred hcceeeEEeecccceEeecCCCC-----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC----
Confidence 45789999999999999998887 666665443311 1122 122211 2223356777631
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.+...++..+.|.+|++|.+..... ++........+-...|++|..-. .+
T Consensus 96 -~n~a~FLlstNdktiKlWKi~er~~----------------------k~~~~~~~~~~~~~~~~~lr~p~-------~~ 145 (433)
T KOG1354|consen 96 -GNLAEFLLSTNDKTIKLWKIRERGS----------------------KKEGYNLPEEGPPGTITSLRLPV-------EG 145 (433)
T ss_pred -CCccEEEEecCCcceeeeeeecccc----------------------ccccccccccCCCCccceeecee-------ec
Confidence 3466788888999999999863111 00011111112223344433211 11
Q ss_pred ecCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--------ecCCee
Q 010748 286 SADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVE 356 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~ 356 (502)
..+-.| .-.|.+.+ .+|+.-|.++.++.+. ..++++ .|=.|.+|.+........... ...-|+
T Consensus 146 ~~~~~v------ea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT 217 (433)
T KOG1354|consen 146 RHDLEV------EASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT 217 (433)
T ss_pred ccccee------eeeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence 111111 01233333 4688899999999998 666655 577899999875443322221 233588
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC-------CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
+..|+|..-+.|+.++..|+|++.|+|........ ......--+..--..|+.+.|++.| ++|++-.. -+|
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltv 295 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTV 295 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-cee
Confidence 99999998889999999999999999954211100 0001111112223578899999998 88887543 579
Q ss_pred EEEECCC-CCeeEEEEecCCC------------C---cEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 430 KLWDLSN-NQPSCIASRNPKA------------G---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 430 ~vwd~~~-~~~~~~~~~~~~~------------~---~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
++||+.. .+| +.+...|. . .-+.++|+.++.+ ++||+....++++++..|...
T Consensus 296 k~wD~nme~~p--v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 296 KLWDLNMEAKP--VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred EEEeccccCCc--ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce-EecccccceEEEecCCCCcce
Confidence 9999954 343 33333331 1 2357899999985 999999999999997666543
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.1e-13 Score=125.17 Aligned_cols=257 Identities=19% Similarity=0.237 Sum_probs=185.5
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s 284 (502)
...|..|++|+.|..|.+||....... .....+|...|..-.|-|.. ..-+++
T Consensus 151 N~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 151 NQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHCNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred cccCceeeccCccceEEeehhhccCcc--------------------------cccccccccchhhhhccCCCCCcCcee
Confidence 678999999999999999999753322 22334788888888888762 347899
Q ss_pred EecCCcEEEEeCCC-Cee--eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE---eecC---Ce
Q 010748 285 ASADKQVKIWDVAA-GKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAA---DV 355 (502)
Q Consensus 285 gs~dg~v~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~---~v 355 (502)
++.||.|++=.+.. +.+ ...+..|.++|.-++.-|..+..|++++.|+.+.-+|++......... .... ..
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred ccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence 99999999887653 332 344567999999999999999999999999999999999876543222 2222 46
Q ss_pred eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe------ccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748 356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 356 ~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
..++.+|.+.+.|++|+.+-.+++||.|........ ..+..+. ...-.|++++|+..+..+| ++-.|-.|
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~I 360 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---GVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDEDI 360 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhcccc---chhhhcCCccccccCcccceeEEecCCcccee-eeecccce
Confidence 788999998889999999999999999986443222 1122222 2345699999998774444 55567779
Q ss_pred EEEECCCCCe----------eEE-EEecCCCC--cEEEEEE-cCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748 430 KLWDLSNNQP----------SCI-ASRNPKAG--AVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 430 ~vwd~~~~~~----------~~~-~~~~~~~~--~v~~~~~-spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
++|.-..+.. ..+ ..+.+|.. .|-.+-| -|...| +++|+.=|.|.||+-.+++.++-.-+.+.
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGSDCGhIFiW~K~t~eii~~MegDr~ 437 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGSDCGHIFIWDKKTGEIIRFMEGDRH 437 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecCccceEEEEecchhHHHHHhhcccc
Confidence 9995433211 111 22455643 4667766 567775 88888889999999999988876655443
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.6e-12 Score=122.74 Aligned_cols=241 Identities=14% Similarity=0.188 Sum_probs=161.5
Q ss_pred CCCCCEE-EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcc--cceeeEEeccCCCcEE
Q 010748 206 REKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRNIL 282 (502)
Q Consensus 206 s~~~~~l-a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~l 282 (502)
+|||+|+ |+|...+.|+|||+..... .+..|. ..|.-.-++.+. ..+
T Consensus 60 s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlDae~V~feiLsDD~-SK~ 109 (703)
T KOG2321|consen 60 SPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLDAEVVDFEILSDDY-SKS 109 (703)
T ss_pred cCCCcEEEEecccCCceEEEEccccee-----------------------------eeeecccccceeEEEeccch-hhh
Confidence 8999975 7888999999999974321 122232 344444445443 234
Q ss_pred EEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCC
Q 010748 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 283 ~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 362 (502)
+.-..|.+|-+.. .-|..- .++ -...-..|+++.-. .-|++++....|+-+++..+.....+....+.++++..++
T Consensus 110 v~L~~DR~IefHa-k~G~hy-~~R-IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 110 VFLQNDRTIEFHA-KYGRHY-RTR-IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred eEeecCceeeehh-hcCeee-eee-cCcCCccccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence 4445566666543 222211 111 12234456666555 3455566667788889998887776666678899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC-----CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
-.. ++++|+.+|.|.+||.|........ .....+..|.+ .|+++.|+.+| -.+++|+..|.|.|||+++.
T Consensus 186 ~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l---~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 186 EHG-LLACGTEDGVVEFWDPRDKSRVGTL---DAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ccc-eEEecccCceEEEecchhhhhheee---ecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccC
Confidence 654 8999999999999999986321111 11112233443 49999999887 89999999999999999999
Q ss_pred CeeEEEEecCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCccccc
Q 010748 438 QPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
+|..+.. .+..-+|..+.|.+.+. -.|++ .....++|||-.+|+....
T Consensus 261 ~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 261 KPLLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMAS 309 (703)
T ss_pred Cceeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceee
Confidence 9755544 34557899999977632 23554 4556899999999887654
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.47 E-value=1.9e-12 Score=114.15 Aligned_cols=201 Identities=18% Similarity=0.162 Sum_probs=146.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
++.+.-++++-.+|.+.+-+...+. .......+.|.-.++...|+....+++++|
T Consensus 130 ~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------le~vq~wk~He~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 130 STSGTKIFVSDSRGSISGVYETEMV-------------------------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred eccCceEEEEcCCCcEEEEecceee-------------------------eeecccccccceeeeeeecccCCCceEEec
Confidence 6778889999999999855443211 111224568999999999998888999999
Q ss_pred ecCCcEEEEeCC-CCeeeEe-eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748 286 SADKQVKIWDVA-AGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 286 s~dg~v~vwd~~-~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 363 (502)
+.|+.+..||++ .++.+.+ .+-|...|.++.-+|..+.++++|++|-.|++||.|+-..+.......+.|..+.++|.
T Consensus 185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred CCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence 999999999998 3344443 46789999999999988899999999999999999976666656677899999999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-CCcEE-EEECCC
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVK-LWDLSN 436 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~-vwd~~~ 436 (502)
....+++++.-.-.++.++....... .........|.+-+..-.|.... .+|+||+. |+.++ +|-.-+
T Consensus 265 ~~~~lL~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 265 IFHRLLAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred hhhHHHHHHHhcCceEEEecccccch----heeeeccccccceeecccccccc-ceeeeeeccccceeeeeeecc
Confidence 55455555555556777776653210 12344455677777777775543 67888764 66544 664433
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.7e-11 Score=121.79 Aligned_cols=209 Identities=12% Similarity=0.089 Sum_probs=133.5
Q ss_pred CCCCCCEEEEecC---CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748 205 DREKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 205 ~s~~~~~la~g~~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
|+|+|+.|+..+. ++.|.+|++.++... .+..+...+.+.+|+|++..+
T Consensus 209 wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 209 FSPNRQEITYMSYANGRPRVYLLDLETGQRE----------------------------LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred ECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------------EeecCCCcccCcEECCCCCEE
Confidence 3899999988764 468999999754221 112345567788999997766
Q ss_pred EEEEecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-CCC--cEEEEecCCCCCccceEeecCCee
Q 010748 282 LASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDR--SVVMKDARISTHSGFKWAVAADVE 356 (502)
Q Consensus 282 l~sgs~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~v~ 356 (502)
+++.+.++. |.+||+.++.. ..+..+........|+|++ +.|+..+ .+| .|.++|+....... .......+.
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 667777665 77779887765 4455566667789999999 5555444 444 57777876654433 222345567
Q ss_pred EEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-C-----Cc
Q 010748 357 SLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-D-----KM 428 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-d-----g~ 428 (502)
...|+|++..++++....+ .|.+|++... ....+. ....+..+.|+|++ ++|+..+. . ..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~----------~~~~lt-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS----------GERILT-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPK 405 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCC----------ceEecc-CCCCCCCCeECCCC-CEEEEEEccCCCCCcce
Confidence 7899999875555543333 5778887543 112222 22346788999998 55554433 2 25
Q ss_pred EEEEECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
+.++++..+... .+. ..+.+...+|+|-
T Consensus 406 L~~~dl~g~~~~---~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 406 LYTVDLTGRNER---EVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEEEECCCCceE---Ecc-CCCCccCcccCCC
Confidence 788888766532 222 2344666778763
No 238
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=9e-12 Score=119.95 Aligned_cols=189 Identities=13% Similarity=0.189 Sum_probs=156.4
Q ss_pred CCcEEEEEecCCcEEEEeCCCCeeeEeec---cCCCCeEEEEEc------C-------------CCCcEEEEEeCCCcEE
Q 010748 278 FRNILASASADKQVKIWDVAAGKCNLTLE---HHTDKVQAVAWN------H-------------HSPQILLSGSFDRSVV 335 (502)
Q Consensus 278 ~~~~l~sgs~dg~v~vwd~~~~~~~~~~~---~h~~~v~~l~~~------~-------------~~~~~l~s~s~dg~i~ 335 (502)
...++|....||.+++|+...++....|. .-++..++..|. | .+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 35689999999999999999988777663 234556666663 1 1335788899999999
Q ss_pred EEecCCCCCccceE--eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEc
Q 010748 336 MKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 413 (502)
Q Consensus 336 iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 413 (502)
+|++..++...... .|.+.|.++.|+.+.. .|++++.|+.+..|+.... .........+..+.+++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEK---------VIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccc---------eeeeeeccCCCccceEEEc
Confidence 99999888765443 5788999999988654 8999999999999999986 6667777788889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCC-----CCcEEEEEeCCCcEEEEECCC
Q 010748 414 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----SPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 414 p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----~~~ll~sg~~dg~i~vwd~~~ 481 (502)
|++ ..+++++ ++|++||+.+.+ .+..+.+|.++|++++|.-. |.|+|.+......+.+|-+..
T Consensus 154 ~D~-~~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDG-KILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCC-CEEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 997 8888877 479999999998 78899999999999999877 788888888888899998765
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=3e-11 Score=120.90 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=127.3
Q ss_pred CCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748 204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 280 (502)
Q Consensus 204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 280 (502)
.|+|+|+.|+..+.. ..|.+||+.++.... +......+.+.+|+|++..
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------------------------l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----------------------------VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----------------------------eecCCCCccceEECCCCCE
Confidence 338999999887643 469999997543210 1112234568899999765
Q ss_pred EEEEEecCCcEEEEe--CCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC--CCCCccceEeecCCee
Q 010748 281 ILASASADKQVKIWD--VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTHSGFKWAVAADVE 356 (502)
Q Consensus 281 ~l~sgs~dg~v~vwd--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~ 356 (502)
++++.+.+|...||. +..+. ...+..+........|+|+|..+++++...|...+|.+. ++.... .........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 556778888766665 44443 455655666667789999994444454445677777654 332222 111223345
Q ss_pred EEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-CCc--EEE
Q 010748 357 SLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKM--VKL 431 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~--i~v 431 (502)
..+|+|++..+++++...+ .|.+||+.++. ...+.. ........|+|++ +.|+.++. .|. +.+
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~----------~~~lt~-~~~~~~p~~spdg-~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQ----------VTALTD-TTRDESPSFAPNG-RYILYATQQGGRSVLAA 399 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCC----------eEEccC-CCCccCceECCCC-CEEEEEEecCCCEEEEE
Confidence 6789999875444443333 69999998752 122222 2334678999998 55555544 433 555
Q ss_pred EECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748 432 WDLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
.++.. . ....+..+.+.+...+|+|-
T Consensus 400 ~~~~g-~--~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSSDG-R--IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EECCC-C--ceEEeecCCCCCCCCccCCC
Confidence 56643 3 23333345566777788874
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=4.7e-10 Score=100.29 Aligned_cols=234 Identities=14% Similarity=0.189 Sum_probs=155.2
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE-EecCC--
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSME-- 218 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-~g~~d-- 218 (502)
..+++|..|..-.++|...| .+||..+.-... .-..+++ .+ +.+.=+- -..++|| +||..
T Consensus 8 ~lsvs~NQD~ScFava~~~G----friyn~~P~ke~--~~r~~~~---~G--~~~veML------fR~N~laLVGGg~~p 70 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG----FRIYNCDPFKES--ASRQFID---GG--FKIVEML------FRSNYLALVGGGSRP 70 (346)
T ss_pred eeEEEEccCCceEEEEecCc----eEEEecCchhhh--hhhcccc---Cc--hhhhhHh------hhhceEEEecCCCCC
Confidence 44589999999999998775 688877653220 0001111 11 1111010 1245554 44443
Q ss_pred ----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 219 ----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 219 ----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
..+.|||=....++ ..-....+|.++.+.++ .|++.- .+.|.||
T Consensus 71 ky~pNkviIWDD~k~~~i----------------------------~el~f~~~I~~V~l~r~---riVvvl-~~~I~Vy 118 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCI----------------------------IELSFNSEIKAVKLRRD---RIVVVL-ENKIYVY 118 (346)
T ss_pred CCCCceEEEEecccCcEE----------------------------EEEEeccceeeEEEcCC---eEEEEe-cCeEEEE
Confidence 47999993211111 11135678999999987 455544 4789999
Q ss_pred eCC-CCeeeEeeccC--CCCeEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCC--ccceEeecCCeeEEEeCCCCCCEE
Q 010748 295 DVA-AGKCNLTLEHH--TDKVQAVAWNHHSPQILLS-GSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 295 d~~-~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~~ 368 (502)
... +.+.++.+..- ...+.+++-+... .+|+. |-.-|.|+|-|+..... +.....|.+.|.|++.+.+|. ++
T Consensus 119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~v 196 (346)
T KOG2111|consen 119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LV 196 (346)
T ss_pred EcCCChhheeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EE
Confidence 988 55666666422 2334444333333 33433 44569999999987665 355678999999999999876 89
Q ss_pred EEEeCCCc-EEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 369 VVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 369 ~~~~~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
++++..|+ |+|||..++ ..+..+.. ....|.+++|||+. .+|+++|..|+|.||.++.
T Consensus 197 ATaStkGTLIRIFdt~~g---------~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDG---------TLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEeccCcEEEEEEEcCCC---------cEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeec
Confidence 99999997 899999997 55555543 34579999999998 9999999999999998876
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.2e-11 Score=113.98 Aligned_cols=287 Identities=17% Similarity=0.275 Sum_probs=180.0
Q ss_pred ccccccccCCCceEEEEE-----ecCCcc--eeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010748 141 DLEDMTINPNDAVIVCAR-----NEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 213 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~-----~~~~~~--~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la 213 (502)
.+.++.|+|-+++|.+=. .++..+ .+.+|...+ .. ..+..... ..-.| .+.|+.+..+.|
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~--~~s~~q~k------~Q~~W---~~qfs~dEsl~a 141 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GV--QRSQIQKK------MQNGW---VPQFSIDESLAA 141 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeecc--ce--ehhheehh------hhcCc---ccccccchhhhh
Confidence 678999999999997731 111111 344555444 20 11111111 12234 244577766554
Q ss_pred EecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEE-----Eec
Q 010748 214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILAS-----ASA 287 (502)
Q Consensus 214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s-----gs~ 287 (502)
-- ..+.+.+|++...... ... -|...|+.+.++|.. ...+|+ ++.
T Consensus 142 rl-v~nev~f~~~~~f~~~--------------------------~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 142 RL-VSNEVQFYDLGSFKTI--------------------------QHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred hh-hcceEEEEecCCccce--------------------------eee--eeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 33 3478999998752211 111 356789999999873 334443 466
Q ss_pred CCcEEEEeCCCCee-----eEeeccCCCCeEEEEEcCCCCcEEEEEeCC-----------CcEEEEecCCCCCccceEee
Q 010748 288 DKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----------RSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 288 dg~v~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~ 351 (502)
-..|+||....... .++|. -.+.| .+.|++.+..+|+.++.| .++++.++.... .......
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L~k 269 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPLLK 269 (566)
T ss_pred CcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEecCC
Confidence 67899998763222 12222 12333 588999886666655432 367888877333 3334455
Q ss_pred cCCeeEEEeCCCCCCE-EEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010748 352 AADVESLAWDPHAEHS-FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DK 427 (502)
Q Consensus 352 ~~~v~~v~~~~~~~~~-~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg 427 (502)
.++|.++.|+|.+..+ ++.|..-..+.|||++. .+++.+ ..++-+++-|+|.| ++|+.+|. -|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------KPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPG 336 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCC----------CEeEeC--CCCCccceEECCCC-CEEEEeecCCCCC
Confidence 7899999999987644 33466788999999984 455544 46777899999998 78877776 47
Q ss_pred cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCccccccc
Q 010748 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-----KGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~-----dg~i~vwd~~~~~~~~~~~ 489 (502)
.|-|||+.+.+ ++..+... .-+-+.|+|||.|+|.+... |+.++||+......-.+.|
T Consensus 337 ~mEvwDv~n~K--~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f 399 (566)
T KOG2315|consen 337 DMEVWDVPNRK--LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF 399 (566)
T ss_pred ceEEEeccchh--hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhh
Confidence 89999999866 55555433 34557999999985544443 6789999986544333333
No 242
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=2.3e-11 Score=109.52 Aligned_cols=250 Identities=15% Similarity=0.239 Sum_probs=172.0
Q ss_pred CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010748 135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~ 214 (502)
-+.|.+.+++...-|-..-+..++.+. +++||.-......-+. .+|. .|..+.++.+ .+....|++
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~dr---tvrv~lkrds~q~wps--I~~~--mP~~~~~~~y-------~~e~~~L~v 85 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDR---TVRVWLKRDSGQYWPS--IYHY--MPSPCSAMEY-------VSESRRLYV 85 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccc---eeeeEEeccccccCch--hhhh--CCCCceEeee-------eccceEEEE
Confidence 355777889999999999999998776 6788866555432232 3343 3455556655 577889999
Q ss_pred ecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEE
Q 010748 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vw 294 (502)
|-..|++.-+.+...- .+.........|...|..+-|+-. ...+++.+.|..+.--
T Consensus 86 g~~ngtvtefs~sedf-----------------------nkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~h 141 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDF-----------------------NKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWH 141 (404)
T ss_pred EEecceEEEEEhhhhh-----------------------hhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEE
Confidence 9999999888774210 112223344579999999999887 5688999998776544
Q ss_pred eCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC--CCccceEeecCCeeEEEeCCCCCCEEEEEe
Q 010748 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~ 372 (502)
-.+.+..+..+.. ....+++.+.- .+...|...|.|.+-.+... .......+|.+.+.+++|.+. +.++++|.
T Consensus 142 c~e~~~~lg~Y~~-~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~ 216 (404)
T KOG1409|consen 142 CTESGNRLGGYNF-ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGA 216 (404)
T ss_pred eeccCCcccceEe-eccCCCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEecc
Confidence 4444443332211 11111121111 13445555666655544333 334445578899999999995 55899999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 373 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
.|..+.+||+-.. ......+.+|...|..+...+.. +.+.+++.||.|.+|+++.
T Consensus 217 ~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 217 SDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence 9999999999876 35667888999999999888876 8899999999999999865
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.8e-11 Score=108.08 Aligned_cols=152 Identities=18% Similarity=0.331 Sum_probs=101.6
Q ss_pred eeEEeccCCCcEEEEEec---------CCcEEEEeCCC-CeeeEeecc-CCCCeEEEEEcCCCCcEEEE-EeCCCcEEEE
Q 010748 270 LGLAWNKEFRNILASASA---------DKQVKIWDVAA-GKCNLTLEH-HTDKVQAVAWNHHSPQILLS-GSFDRSVVMK 337 (502)
Q Consensus 270 ~~l~~~~~~~~~l~sgs~---------dg~v~vwd~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s-~s~dg~i~iw 337 (502)
..+.|++.|..+++.... -+...||-++. +..+..+.. ..++|.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899997666665552 13355555532 233444432 34579999999999444333 4467899999
Q ss_pred ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcC
Q 010748 338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 338 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
|++.. .. ..-....+..+.|+|+|. ++++++ ..|.|.+||+++. ..+.... | ..++.++|+|
T Consensus 89 d~~~~-~i--~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~---------~~i~~~~-~-~~~t~~~WsP 153 (194)
T PF08662_consen 89 DVKGK-KI--FSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK---------KKISTFE-H-SDATDVEWSP 153 (194)
T ss_pred cCccc-Ee--EeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC---------EEeeccc-c-CcEEEEEEcC
Confidence 99722 22 222356788999999987 455543 3577999999965 4444433 3 3478999999
Q ss_pred CCCCEEEEEeC------CCcEEEEECCCC
Q 010748 415 LVPNLLATGST------DKMVKLWDLSNN 437 (502)
Q Consensus 415 ~~~~~l~t~s~------dg~i~vwd~~~~ 437 (502)
+| ++|++++. |+.++||++...
T Consensus 154 dG-r~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 DG-RYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CC-CEEEEEEeccceeccccEEEEEecCe
Confidence 99 77777764 788999998643
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.8e-10 Score=115.73 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=125.1
Q ss_pred CcccceeeEEeccCCCcEEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEec
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDA 339 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--i~iwd~ 339 (502)
.+...+.+..|+|++..++++...++ .|.+||+.+++... +....+......|+|++..++++.+.+|. |.++|+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 35668889999999654444433333 58889998876432 22223344578999999555566777775 777788
Q ss_pred CCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
.++.... ...+.......+|+|++..+++++..+|. |+++|+.++ . ...+..+.......+|+|++
T Consensus 294 ~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------~-~~~Lt~~g~~~~~~~~SpDG- 361 (448)
T PRK04792 294 ATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---------K-VSRLTFEGEQNLGGSITPDG- 361 (448)
T ss_pred CCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEEecCCCCCcCeeECCCC-
Confidence 7665433 22334456778999998866666655554 556666654 1 22222222334567899998
Q ss_pred CEEEEEeC-CC--cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCccccc
Q 010748 418 NLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAGISN 487 (502)
Q Consensus 418 ~~l~t~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~--i~vwd~~~~~~~~~ 487 (502)
.+|+..+. .+ .|.++|+.+++...+.. . .......|+|+|++++.+...+|. ++++++ ++...+.
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~ 431 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVLTS---T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR 431 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEccC---C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 55555443 44 35667887776433221 1 122345799999976666665554 667776 3444333
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=2.2e-10 Score=115.01 Aligned_cols=199 Identities=18% Similarity=0.179 Sum_probs=129.3
Q ss_pred CcccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEe
Q 010748 264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd 338 (502)
.+...+.+.+|+|++. +|+.++.. ..|++||+.+++... +..+...+.+++|+|++..++++.+.++ .|.+|+
T Consensus 187 ~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 187 RSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 3556788999999955 56655443 479999999886543 3335566778999999955555665555 588888
Q ss_pred cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... ...+........|+|++..+++++...+ .|+++++.+. ....+..+...+..+.|+|++
T Consensus 265 ~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~----------~~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 265 LDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG----------EVRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC----------CEEEeecCCCCccCeEECCCC
Confidence 88765332 2233334556789998875555555444 4777777654 233444455667888999998
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC--cEEEEECC
Q 010748 417 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTL 480 (502)
Q Consensus 417 ~~~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg--~i~vwd~~ 480 (502)
.+|+.++.++ .|.+||+.++....+. .. .......|+|++++++++...++ .+++.+..
T Consensus 334 -~~i~~~~~~~~~~~i~~~d~~~~~~~~l~---~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 -DLIAFVHREGGGFNIAVMDLDGGGERVLT---DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred -CEEEEEEccCCceEEEEEeCCCCCeEEcc---CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7777777665 7889999886532222 11 22345689999997555554443 35555543
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=4.4e-10 Score=106.47 Aligned_cols=306 Identities=13% Similarity=0.137 Sum_probs=193.6
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
....+..+++||.|.+|++....+ +++|-...... .+...|. .+.. +.|||.++||.+-+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~----V~~~~g~~~~~---l~~~~~~--------~V~~----~~fSP~~kYL~tw~~ 91 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG----VECWGGPSKAK---LVRFRHP--------DVKY----LDFSPNEKYLVTWSR 91 (561)
T ss_pred cCcchhheeecCcchheehhhccc----eEEccccchhh---eeeeecC--------Ccee----cccCcccceeeeecc
Confidence 456789999999999999998775 67776654432 2222221 1122 344899999999776
Q ss_pred CCc---------------EEEeeCCCCCCcCcceecCCcchhhhhhccccC--------------------C--cccccc
Q 010748 218 EPA---------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKG--------------------K--KSSIKY 260 (502)
Q Consensus 218 dg~---------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------~--~~~~~~ 260 (502)
.+. +.|||..++..+..+......-.. ....+-+ . ......
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~--Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~ 169 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG--WPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFK 169 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc--cceeeeeecchhhhhhccCeEEEEecCCccccCchh
Confidence 554 899999988766544333221000 0000000 0 000000
Q ss_pred cccCcccceeeEEeccCCCc-EEEE-----EecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-----
Q 010748 261 KKGSHTDSVLGLAWNKEFRN-ILAS-----ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS----- 329 (502)
Q Consensus 261 ~~~~h~~~V~~l~~~~~~~~-~l~s-----gs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s----- 329 (502)
.+ ....|+..+|+|.+.+ .||. ....+++++|.+..++.+.+-.-....-..+.|++.|..+|+-.-
T Consensus 170 ~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 170 NL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 11 1256788888887322 3332 366788999999877766554433444457899999843332211
Q ss_pred -----CCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEecc
Q 010748 330 -----FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 403 (502)
Q Consensus 330 -----~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h 403 (502)
....+.|++++........ ...++|..++|.|.+..+.++. .....+.++|++.. ..+...
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------------l~~~~P 314 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------------LRFYFP 314 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc------------eEEecC
Confidence 1246888888865555433 6689999999999887655544 68889999999853 233344
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe-----CCCcEE
Q 010748 404 DKAVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-----SKGKLE 475 (502)
Q Consensus 404 ~~~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~-----~dg~i~ 475 (502)
...-..+.|+|.+ ++++.++.+ |.+-+||..... .++..+.+. ...-+.|+|+++|+...-. .|..|+
T Consensus 315 e~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf-~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~ 390 (561)
T COG5354 315 EQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIK 390 (561)
T ss_pred CcccccccccCcc-cEEEEecCCccccceEEeccCCce-EEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceE
Confidence 5556778899998 888887765 679999987654 344344433 3455789999997444322 356899
Q ss_pred EEECCCCc
Q 010748 476 IWDTLSDA 483 (502)
Q Consensus 476 vwd~~~~~ 483 (502)
||++....
T Consensus 391 l~~v~g~~ 398 (561)
T COG5354 391 LWDVYGAK 398 (561)
T ss_pred EEEecCch
Confidence 99996544
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3e-10 Score=114.39 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=125.9
Q ss_pred CcccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEe
Q 010748 264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd 338 (502)
.+...+...+|+|++. .|+..+.. ..|.+|++.+++... +....+.+....|+|+|..++++.+.+| .|.+||
T Consensus 196 ~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 4567789999999965 55554433 368999998886533 3333445567899999954555666665 578889
Q ss_pred cCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... ............|+|++..+++++..+| .|+++++.++. ...+...........|+|++
T Consensus 274 ~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 274 LASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----------AERVTFVGNYNARPRLSADG 342 (430)
T ss_pred CCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----------EEEeecCCCCccceEECCCC
Confidence 88765433 2333445667889999886666665555 46667776541 12222122334567899998
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC--cEEEEECCC
Q 010748 417 PNLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTLS 481 (502)
Q Consensus 417 ~~~l~t~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg--~i~vwd~~~ 481 (502)
..|+..+. ++ .|.+||+.++....+.. . .......|+|+|++++.+....| .|.++++..
T Consensus 343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred -CEEEEEEccCCceEEEEEECCCCCEEEccC-C---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 56655544 33 48889998877433322 1 12235689999997666655444 466667643
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=1.6e-09 Score=105.30 Aligned_cols=286 Identities=13% Similarity=0.178 Sum_probs=168.3
Q ss_pred ccccccccCCCceEEEEEecC-CcceeEEEEEecCCCCCCCeeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEEecC-
Q 010748 141 DLEDMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGSM- 217 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~-~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~la~g~~- 217 (502)
.-.-++++|++++|.++.... ....+..|.++...+ .|....... ....|..++. +|++++|+++..
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~~~~~~g~~p~~i~~-------~~~g~~l~vany~ 107 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLNSVPSGGSSPCHIAV-------DPDGRFLYVANYG 107 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEEEEEESSSCEEEEEE-------CTTSSEEEEEETT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEeeeeccCCCCcEEEEE-------ecCCCEEEEEEcc
Confidence 446788999999999987653 445777777776643 444333333 2333333332 789999998874
Q ss_pred CCcEEEeeCCCCCCcCcce-ecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 218 EPAIEIWDLDVIDEVQPHV-ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
+|.|.+++++....+.... +..- ........ ..-.....++.|+|+++.++++.-....|.+|++
T Consensus 108 ~g~v~v~~l~~~g~l~~~~~~~~~-----------~g~g~~~~---rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~ 173 (345)
T PF10282_consen 108 GGSVSVFPLDDDGSLGEVVQTVRH-----------EGSGPNPD---RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI 173 (345)
T ss_dssp TTEEEEEEECTTSEEEEEEEEEES-----------EEEESSTT---TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEEccCCcccceeeeeccc-----------CCCCCccc---ccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence 7999999997532222110 0000 00000000 1122446788999996655555545568999999
Q ss_pred CCCe--e--eEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceE--e-e------cCCeeEEEeC
Q 010748 297 AAGK--C--NLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW--A-V------AADVESLAWD 361 (502)
Q Consensus 297 ~~~~--~--~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~--~-~------~~~v~~v~~~ 361 (502)
.... . ...+. ........+.|+|++....++.-.+++|.++++....... ... . . ......++++
T Consensus 174 ~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 174 DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp -TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 7654 2 12222 2446688999999995555666778999999988322111 111 0 1 1257789999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEEC--CCCC
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNNQ 438 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~--~~~~ 438 (502)
|++..++++....+.|.+|++...... ...+..+.........++++|++ ++|+++. .++.|.+|++ .++.
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCc
Confidence 998866666667889999999432100 13344444444557999999998 6665555 5778999876 4555
Q ss_pred eeEEEEecCCCCcEEEEEE
Q 010748 439 PSCIASRNPKAGAVFSVAF 457 (502)
Q Consensus 439 ~~~~~~~~~~~~~v~~~~~ 457 (502)
+...... .......|+.|
T Consensus 328 l~~~~~~-~~~~~p~ci~f 345 (345)
T PF10282_consen 328 LTPVGSS-VPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEE-EESSSEEEEEE
T ss_pred EEEeccc-ccCCCCEEEeC
Confidence 4333322 22344666665
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=2.2e-10 Score=110.57 Aligned_cols=194 Identities=19% Similarity=0.249 Sum_probs=150.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec------c---
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN------K--- 276 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~------~--- 276 (502)
+|...|+|..+.||.++||+.......+.+.... .-++..+++.|. |
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~------------------------~~s~t~~~~~w~L~~~~s~~k~ 57 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA------------------------SLSGTCTYTKWGLSADYSPMKW 57 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch------------------------hccCcceeEEEEEEeccchHHH
Confidence 4568899999999999999997654433221111 011222222221 1
Q ss_pred ----------CCCcEEEEEecCCcEEEEeCCCCeeeEeec--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748 277 ----------EFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 277 ----------~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 344 (502)
.+..+++-|...|.|.+|++..++....+. .|.+.|.++.|+.+- ..|.+++.|+.+..|+......
T Consensus 58 ~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 58 LSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred HhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee
Confidence 124578889999999999999999888874 689999999999887 7899999999999999999888
Q ss_pred ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC-----CCCE
Q 010748 345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL-----VPNL 419 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~~ 419 (502)
....+.....+.+++.+|++. .+++++ +.|++||+.+. +.+..+.+|.++|++++|... |..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEecccccccee
Confidence 876667778899999999965 676664 78999999997 889999999999999999876 5455
Q ss_pred EEEEeCCCcEEEEECCC
Q 010748 420 LATGSTDKMVKLWDLSN 436 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~ 436 (502)
|.+...+..+.+|-+..
T Consensus 205 Lssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAERGITVWVVEK 221 (541)
T ss_pred eeccccccceeEEEEEc
Confidence 66666667788886654
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6.4e-10 Score=110.89 Aligned_cols=207 Identities=10% Similarity=0.058 Sum_probs=126.1
Q ss_pred cccceeeEEeccCCCc--EEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC----cEEE
Q 010748 265 HTDSVLGLAWNKEFRN--ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVM 336 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~--~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~i~i 336 (502)
....+.+-+|+|+|.. ++++...+| .|.+.++.+++... +....+......|+|+|..++++....| .+.+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 3445667799999765 333444444 57788888775433 2223445567899999955444443333 3444
Q ss_pred EecCCCC--CccceEee-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEE--CCCCCCCCCCCCCccceEEeccCCCeeEEE
Q 010748 337 KDARIST--HSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFD--IRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 411 (502)
Q Consensus 337 wd~~~~~--~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 411 (502)
|++.... ........ .......+|+|+|..+++++..+|...+|. +... ......+..+...+....
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~--------g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE--------GQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc--------ccceEEeccCCCCcccee
Confidence 6766431 11112222 233467899999886666666677655554 4321 122334444556678899
Q ss_pred EcCCCCCEEEEEeC-C--CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCcc
Q 010748 412 YNPLVPNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAG 484 (502)
Q Consensus 412 ~sp~~~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vwd~~~~~~ 484 (502)
|+|+| +.|+..+. + ..|.+||+.+++...+. .....+....|+|+|+++++++... ..|.+|++.+++.
T Consensus 334 wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 334 WSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLT---TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEcc---CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 99998 65655443 3 36999999988743332 2234567899999999766555443 4688889877654
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.35 E-value=3.6e-10 Score=109.81 Aligned_cols=196 Identities=16% Similarity=0.194 Sum_probs=140.1
Q ss_pred cEEE-EEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748 280 NILA-SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 280 ~~l~-sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 358 (502)
++++ +-..++.|.|.|..+.+.+.++......-..+.++|++ +++++++.||.|.++|+.+.+... ..........+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~-~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA-TIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE-EEE-SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE-EEecCCCcceE
Confidence 4554 45568999999999999999997655544567899999 788888999999999999988655 45666778999
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-------CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
+++++|..++++....+.+.++|.++. +++..+... ...+.++..+|..+.++++.-.-+.|.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tl---------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETL---------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV 154 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT-----------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccc---------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE
Confidence 999998866666678999999999987 666666543 3467888888887445666555688888
Q ss_pred EECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
.|....++....... .........|+|+++|++++......|-++|+.+++.+..
T Consensus 155 Vdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 898877654443333 3456778999999999888777888999999999877654
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=5e-10 Score=114.65 Aligned_cols=199 Identities=14% Similarity=0.185 Sum_probs=143.6
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCee--eeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010748 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d 218 (502)
.|....+.-....++.++..+ .+++++.... .+. ..+.. .|+-...+-..++++.-++++|+.-
T Consensus 89 wi~g~~l~~e~k~i~l~~~~n-----s~~i~d~~~~---~~~~~i~~~e------r~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRN-----SLLIRDSKNS---SVLSKIQSDE------RCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred cccccchhhhcceEEEEEcCc-----eEEEEecccC---ceehhcCCCc------eEEEEeEEEEeccCcEEEEEecccc
Confidence 444455556667777777776 5555555443 222 11111 1111111123347788899999999
Q ss_pred CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC
Q 010748 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~ 298 (502)
+.|.+|+... + .....+.+|.+.|.++.|+.+ +.+++++|.|.++++|.+.+
T Consensus 155 ~~iivW~~~~-d--------------------------n~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s 206 (967)
T KOG0974|consen 155 GEIIVWKPHE-D--------------------------NKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDS 206 (967)
T ss_pred ccEEEEeccc-c--------------------------CCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeeccc
Confidence 9999999861 1 111145689999999999999 55999999999999999999
Q ss_pred CeeeE-eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748 299 GKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 299 ~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v 377 (502)
.+... +..+|+..|..++|+|. .++|++.|.++++|+................+..++..+.. ...++++.||.+
T Consensus 207 ~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 207 REVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTL 282 (967)
T ss_pred ccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcch
Confidence 88766 66789999999999996 79999999999999776555443333345668888888754 478889999999
Q ss_pred EEEECCCC
Q 010748 378 KGFDIRTA 385 (502)
Q Consensus 378 ~i~d~~~~ 385 (502)
++|++...
T Consensus 283 k~~~l~~r 290 (967)
T KOG0974|consen 283 KLWDLNGR 290 (967)
T ss_pred hhhhhhcc
Confidence 99887543
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=7e-10 Score=111.43 Aligned_cols=190 Identities=17% Similarity=0.160 Sum_probs=117.0
Q ss_pred CCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748 204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 280 (502)
Q Consensus 204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 280 (502)
.|+|+|++||.++.. ..|++|++.++... .+..+...+.+++|+|++..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----------------------------~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----------------------------KVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----------------------------EeecCCCCccceEECCCCCE
Confidence 448999999987654 47999998753211 11123455677899999665
Q ss_pred EEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCccceEeecCCee
Q 010748 281 ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVE 356 (502)
Q Consensus 281 ~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~ 356 (502)
++++.+.++ .|++|++.+++. ..+..+........|+|++..+++++...+ .|.++++.+..... .......+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCcc
Confidence 656666554 588999987754 334445555567899999944444444444 57777777654322 222345567
Q ss_pred EEEeCCCCCCEEEEEeCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC---cEE
Q 010748 357 SLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MVK 430 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---~i~ 430 (502)
...|+|++. +++.++.++ .|.+||+.+.. ...+.. ........|+|++ ++|+..+.++ .++
T Consensus 326 ~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~----------~~~l~~-~~~~~~p~~spdg-~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 326 SPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG----------ERVLTD-TGLDESPSFAPNG-RMILYATTRGGRGVLG 392 (417)
T ss_pred CeEECCCCC-EEEEEEccCCceEEEEEeCCCCC----------eEEccC-CCCCCCceECCCC-CEEEEEEeCCCcEEEE
Confidence 889999887 455555444 68888887641 122221 1234556899998 5555555443 355
Q ss_pred EEECCC
Q 010748 431 LWDLSN 436 (502)
Q Consensus 431 vwd~~~ 436 (502)
+.+...
T Consensus 393 ~~~~~g 398 (417)
T TIGR02800 393 LVSTDG 398 (417)
T ss_pred EEECCC
Confidence 555443
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=3.1e-10 Score=116.16 Aligned_cols=191 Identities=13% Similarity=0.176 Sum_probs=150.1
Q ss_pred EEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCe-----EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV-----QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 346 (502)
Q Consensus 272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 346 (502)
..+.-. ...++.++.++.+.+||...+..+..+.. ...+ .-+.+++.. -++++|+.-+.|.+|+........
T Consensus 93 ~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 93 AKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred cchhhh-cceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc
Confidence 333334 34788888889999999988777666653 3222 122334554 789999999999999998555555
Q ss_pred ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748 347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 426 (502)
Q Consensus 347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d 426 (502)
...+|.+.+.++.|+-++. ++++.++|.++++|++.+.. .......+|+..|..+.|.|+ .++|++.|
T Consensus 170 ~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~--------~~~~~~fgHsaRvw~~~~~~n---~i~t~ged 237 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSRE--------VLGCTGFGHSARVWACCFLPN---RIITVGED 237 (967)
T ss_pred eecccCCceEEEEEccCCc-EEEEEecCcceeeeeccccc--------ccCcccccccceeEEEEeccc---eeEEeccc
Confidence 5789999999999999876 89999999999999999873 333567789999999999984 89999999
Q ss_pred CcEEEEECCCCCeeEEEEecCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 427 KMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
.+.++|+....+. ..+..|. ..|+.++..+... +++|++.||.+++|++..
T Consensus 238 ctcrvW~~~~~~l---~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 238 CTCRVWGVNGTQL---EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEEeccccee---hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 9999997766552 2455553 4689999988887 699999999999999865
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.6e-09 Score=108.93 Aligned_cols=214 Identities=14% Similarity=0.088 Sum_probs=126.2
Q ss_pred CCCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748 203 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 203 ~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
+.|+|+|+.|+..+.. ..|.+||+.++.... ...+ .......+|+|++.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-------------------------lt~~---~g~~~~~~wSPDG~ 274 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-------------------------VTSF---PGINGAPRFSPDGK 274 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------------------ecCC---CCCcCCeeECCCCC
Confidence 3448999999876543 358888886532110 0011 12234679999976
Q ss_pred cEEEEEecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEecCCCCCccceEeecCCe
Q 010748 280 NILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTHSGFKWAVAADV 355 (502)
Q Consensus 280 ~~l~sgs~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v 355 (502)
.++++.+.+|. |.+||+.+++. ..+..+........|+|++..+++++..++. |.++|+.+++...... .....
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~ 352 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQN 352 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCC
Confidence 56666777775 77788887764 3444455567788999999445555544554 5556666555332221 22233
Q ss_pred eEEEeCCCCCCEEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc--EEE
Q 010748 356 ESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKL 431 (502)
Q Consensus 356 ~~v~~~~~~~~~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~v 431 (502)
...+|+|++..+++++...+. |.++|+.++. ...+... .......|+|++..++++...++. +.+
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----------~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----------MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAA 421 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCC----------eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 457899998866666555554 5556766541 1222211 122345799999445555545544 667
Q ss_pred EECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748 432 WDLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
++..... ...+..+.+.+...+|+|-
T Consensus 422 ~~~~G~~---~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 422 VSIDGRF---KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EECCCCc---eEECcCCCCCcCCCccCCC
Confidence 7775433 3334444566777888873
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.2e-08 Score=91.79 Aligned_cols=287 Identities=11% Similarity=0.172 Sum_probs=180.5
Q ss_pred ceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCC
Q 010748 164 SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGG 240 (502)
Q Consensus 164 ~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~ 240 (502)
..+.+|.++...+ .+..-.......-|.-++| +|++++|.++..+ |.|.-|.++..+.... .+.
T Consensus 16 ~gI~v~~ld~~~g---~l~~~~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln- 82 (346)
T COG2706 16 QGIYVFNLDTKTG---ELSLLQLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLN- 82 (346)
T ss_pred CceEEEEEeCccc---ccchhhhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--Eee-
Confidence 3577888886665 4433333334455566666 7899888887654 7888888874211110 000
Q ss_pred cchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE-ecCCcEEEEeCCC-CeeeE--eeccCCCC-----
Q 010748 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQVKIWDVAA-GKCNL--TLEHHTDK----- 311 (502)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg-s~dg~v~vwd~~~-~~~~~--~~~~h~~~----- 311 (502)
....-..+-+.++++++++ +|+++ -..|.|.++-++. |.+.. .+..|.++
T Consensus 83 --------------------~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~r 141 (346)
T COG2706 83 --------------------RQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHER 141 (346)
T ss_pred --------------------ccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcc
Confidence 0001112238899999965 55555 4468899999865 43221 12235554
Q ss_pred -----eEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCccc---eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748 312 -----VQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382 (502)
Q Consensus 312 -----v~~l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~---~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~ 382 (502)
+.+..+.|++ ++|++... --.|.+|++..+..... ........+.+.|+|+++...++.=-+++|.+|..
T Consensus 142 Q~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 142 QESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred ccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 8889999999 67766653 35789999986554321 22456678999999998855556667899999998
Q ss_pred CCCCCCCCCCCCccceEEe------ccCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCC--CCeeEEEEecCCCCcEE
Q 010748 383 RTAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPSCIASRNPKAGAVF 453 (502)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~--~~~~~~~~~~~~~~~v~ 453 (502)
...... ...++.+. ........|.++|+| ++|+++-. ...|-+|.+.. ++...+.....+....+
T Consensus 221 ~~~~g~-----~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR 294 (346)
T COG2706 221 NPAVGK-----FEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR 294 (346)
T ss_pred cCCCce-----EEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc
Confidence 874110 11122221 123567889999998 77766543 45688887754 44444445555555678
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748 454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 454 ~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
.+.|+|.+++|+|++-....|.+|.+.....-......
T Consensus 295 ~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 295 DFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred cceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 99999999986666555568999987655443333333
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2e-09 Score=107.38 Aligned_cols=181 Identities=11% Similarity=0.105 Sum_probs=106.5
Q ss_pred ceeeEEeccCCCcEEEEEecCC----cEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEec-
Q 010748 268 SVLGLAWNKEFRNILASASADK----QVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA- 339 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg----~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~- 339 (502)
.....+|+|+|..++++...+| .+.+|++..+ +.......+.......+|+|+|..+++++..+|...+|.+
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3456799999665555543333 3445777653 3333333333445678999999444545556676566644
Q ss_pred -CCC-CCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748 340 -RIS-THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 340 -~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
... ............+....|+|++..+++++..+| .|.+||+.++. ...+......+....|+|+
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----------~~~Lt~~~~~~~~p~wSpD 381 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----------DYQLTTSPENKESPSWAID 381 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----------eEEccCCCCCccceEECCC
Confidence 321 112212223345678899999886555555443 68999998762 2233333345678999999
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCC
Q 010748 416 VPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 461 (502)
Q Consensus 416 ~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~ 461 (502)
+..+++++.. ...|.+|++..++...+.. ..+.+...+|+|-.
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~---~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKIVI---GSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEeec---CCCcccCceecCCC
Confidence 8444444443 3468889998876433332 33556677888753
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=2.1e-09 Score=108.20 Aligned_cols=211 Identities=14% Similarity=0.140 Sum_probs=126.4
Q ss_pred CCCCCCEEEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748 205 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 205 ~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
|+|+|+.|+..+.. ..|.+|++.++.... +....+.+...+|+|++..+
T Consensus 206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------------l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------------ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------------ccCCCCCcCCeEECCCCCEE
Confidence 38999999876544 468889987542210 01122334568999996655
Q ss_pred EEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCccceEeecCCeeE
Q 010748 282 LASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVES 357 (502)
Q Consensus 282 l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~ 357 (502)
+++.+.+| .|.+||+.+++.. .+..+........|+|++..+++++..+| .|.++++.++....... .......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 55666665 5888899887653 45555666777899999944555544444 46666776655332221 1223345
Q ss_pred EEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-CCC--cEEEE
Q 010748 358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDK--MVKLW 432 (502)
Q Consensus 358 v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg--~i~vw 432 (502)
..|+|++..++++...++ .|.+||+.++. ...+. +........|+|+| ++++..+ ..+ .|.++
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~----------~~~lt-~~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGS----------VRILT-DTSLDESPSVAPNG-TMLIYATRQQGRGVLMLV 403 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCC----------EEEcc-CCCCCCCceECCCC-CEEEEEEecCCceEEEEE
Confidence 789999876555554444 47888887652 11221 22223356899998 5555444 333 36677
Q ss_pred ECCCCCeeEEEEecCCCCcEEEEEEcCC
Q 010748 433 DLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
++.... ...+..+.+.+...+|+|-
T Consensus 404 ~~~g~~---~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 404 SINGRV---RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCc---eEECcCCCCCcCCCccCCC
Confidence 775443 2233334556677778763
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=131.28 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=152.2
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~ 342 (502)
.|-..|.++.-+|.. .+.+||+.||.|++|....++.+..++ ..+..|+.+.|+.+| +.+..+..||.+.+|... +
T Consensus 2206 ~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred cccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-C
Confidence 455778888888884 478899999999999999888877773 334899999999999 788999999999999988 3
Q ss_pred CCccceEeecCCeeEEEeCCCCCCEEEEE---eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748 343 THSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 343 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 419 (502)
+....-..|......+.|-. . .+++. +.++.+.+||..... .....-..|.+.++++++.|.. .+
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~--------~~s~v~~~H~~gaT~l~~~P~~-ql 2350 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPP--------MNSLVHTCHDGGATVLAYAPKH-QL 2350 (2439)
T ss_pred cceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCc--------ccceeeeecCCCceEEEEcCcc-eE
Confidence 33322334555666666654 2 34443 467899999987652 2222338899999999999987 99
Q ss_pred EEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748 420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
|++||.+|.|++||++..+. ...+.. +. ... .+++|+..|.|+||++.....+.+....+
T Consensus 2351 lisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh-eeeccCcccceEEEEccccchhhcCchhh
Confidence 99999999999999988763 222221 44 334 59999999999999999887766554444
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=8.8e-09 Score=113.04 Aligned_cols=262 Identities=13% Similarity=0.148 Sum_probs=159.5
Q ss_pred CC-CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 206 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 206 s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
++ +++++++-+..+.|++||.... .. ..+++.... -..... ....+-.....|++.+++..++++
T Consensus 576 d~~~g~lyVaDs~n~rI~v~d~~G~-~i---~~ig~~g~~-------G~~dG~---~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 576 DLLNNRLFISDSNHNRIVVTDLDGN-FI---VQIGSTGEE-------GLRDGS---FEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ECCCCeEEEEECCCCeEEEEeCCCC-EE---EEEccCCCc-------CCCCCc---hhccccCCCcEEEEeCCCCEEEEE
Confidence 44 4667777778889999998632 11 111110000 000000 001223346789999884434444
Q ss_pred EecCCcEEEEeCCCCeeeEeeccC-----------------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748 285 ASADKQVKIWDVAAGKCNLTLEHH-----------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 347 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 347 (502)
-...+.|+++|+.++.. .++.+- -.....++++|.+..++++.+.++.|++||...+.....
T Consensus 642 Dt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 642 DTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred eCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 45567899999877653 333110 113467999996547888888899999999876543210
Q ss_pred eE--------------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC----CCCCccceEEec-------
Q 010748 348 KW--------------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD----STSQQSSFTLHA------- 402 (502)
Q Consensus 348 ~~--------------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~----~~~~~~~~~~~~------- 402 (502)
.. ..-.....++++|++..++++-+.++.|++||+.++..... .........+..
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 00 01124567999998876777778889999999986521000 000000011110
Q ss_pred -cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-----------cCCCCcEEEEEEcCCCCcEEEEEeC
Q 010748 403 -HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----------NPKAGAVFSVAFSEDSPFVLAIGGS 470 (502)
Q Consensus 403 -h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~v~~~~~spd~~~ll~sg~~ 470 (502)
.-....+++++++| .++++-+.++.|++||..++....+... .........++++++|+ ++++-+.
T Consensus 801 ~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~ 878 (1057)
T PLN02919 801 VLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTN 878 (1057)
T ss_pred hhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECC
Confidence 11123588999988 7888888899999999987763322211 01122467899999998 7888888
Q ss_pred CCcEEEEECCCCcc
Q 010748 471 KGKLEIWDTLSDAG 484 (502)
Q Consensus 471 dg~i~vwd~~~~~~ 484 (502)
++.|++||+.++..
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999988765
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=3.2e-09 Score=101.64 Aligned_cols=291 Identities=13% Similarity=0.143 Sum_probs=185.3
Q ss_pred ccccccccCCCceEEEEEecCC--------cceeEEEEEecCCCCCCCeeeeec--cccCCCcceeeeecCCCCCCCCCC
Q 010748 141 DLEDMTINPNDAVIVCARNEDD--------VSHLEVYILEESDGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~--------~~~l~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~ 210 (502)
.|.-+.|||..++|++-+..-. ...|.||...++.. +...+. ...+..|+ +. ||.+++
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l----krsF~~~~~~~~~WP~-fr-------WS~DdK 318 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL----KRSFPVIKSPYLKWPI-FR-------WSHDDK 318 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch----hcceeccCCCccccce-EE-------eccCCc
Confidence 4677888999999988664332 24677777665542 122221 11112221 23 489999
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec---
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--- 287 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--- 287 (502)
|+|--+. ..|.||+..+...+.. + .-.-..|....|+|. +++||--+-
T Consensus 319 y~Arm~~-~sisIyEtpsf~lld~---------------------K------slki~gIr~FswsP~-~~llAYwtpe~~ 369 (698)
T KOG2314|consen 319 YFARMTG-NSISIYETPSFMLLDK---------------------K------SLKISGIRDFSWSPT-SNLLAYWTPETN 369 (698)
T ss_pred eeEEecc-ceEEEEecCceeeecc---------------------c------ccCCccccCcccCCC-cceEEEEccccc
Confidence 9998766 5788998765322211 0 012356888999998 667764332
Q ss_pred --CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEE----------eCCCcEEEEecCCCCCccceEeecCCe
Q 010748 288 --DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG----------SFDRSVVMKDARISTHSGFKWAVAADV 355 (502)
Q Consensus 288 --dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~----------s~dg~i~iwd~~~~~~~~~~~~~~~~v 355 (502)
-..+.|-.+.+++.+++-.-|+-.=..|.|-.+| .+|+.- +.-..+-|+.++....+.........|
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 2357777888887777766665555567787777 555432 222346778888888777777888999
Q ss_pred eEEEeCCCCCCEEEEEeC--CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe---CCCcEE
Q 010748 356 ESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVK 430 (502)
Q Consensus 356 ~~v~~~~~~~~~~~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s---~dg~i~ 430 (502)
...+|.|.|..+.+..+. ..++.+|-+.+.... ...+..+. ....+.+.|+|.| ++++.+. ..|.+.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-----~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-----PSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLE 520 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCc-----hhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceE
Confidence 999999998866555543 346888988753210 12333333 3667899999998 7766653 478899
Q ss_pred EEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCcc
Q 010748 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAG 484 (502)
Q Consensus 431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~------dg~i~vwd~~~~~~ 484 (502)
++|+...... ......| ...+.+.|.|.|+| ++|+++ |..-+||++...-.
T Consensus 521 F~D~~~a~~k-~~~~~eh-~~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 521 FYDTDYADLK-DTASPEH-FAATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred EEecchhhhh-hccCccc-cccccceECCCCCE-EEEeeehhhhccccceEEEEeecHHH
Confidence 9998753311 1222233 34677899999998 555554 34568888865443
No 262
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.23 E-value=1.3e-10 Score=100.98 Aligned_cols=149 Identities=18% Similarity=0.212 Sum_probs=105.4
Q ss_pred CcEEEEEecCCcEEEEeCCCCee-eEeeccCCCCeEEEEEcCCCCcEEEEEeC-----CCcEEEEecCCCCCccceEeec
Q 010748 279 RNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 279 ~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~ 352 (502)
.+-++++..||.+.+++.+.-.. .+.+..-...-.+.++...+ +++.++.. -+..++|+++..+.........
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeeccccccccccccccc
Confidence 45799999999999999765211 11111111111223333344 34443321 2345667766544333222333
Q ss_pred CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
..|.+++-+|...+++++|+.+|.+-+||.|+. ..++..+.+|+.+++-+-|+|..+..|++++.||.+..|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 449999999998889999999999999999988 467778899999999999999999999999999999999
Q ss_pred ECCC
Q 010748 433 DLSN 436 (502)
Q Consensus 433 d~~~ 436 (502)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9875
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.20 E-value=6e-08 Score=92.34 Aligned_cols=250 Identities=11% Similarity=0.092 Sum_probs=145.3
Q ss_pred CCCCCEEEEecC----------CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec
Q 010748 206 REKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN 275 (502)
Q Consensus 206 s~~~~~la~g~~----------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 275 (502)
||+++.|.++.. +..|.+||+.+......+.+-.. +. + .....-..++++
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~-----------------p~--~-~~~~~~~~~~ls 113 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG-----------------PR--F-LVGTYPWMTSLT 113 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-----------------ch--h-hccCccceEEEC
Confidence 899998888766 68999999987655433221100 00 0 012234467899
Q ss_pred cCCCcEEEEEe-c-CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc-eEee-
Q 010748 276 KEFRNILASAS-A-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAV- 351 (502)
Q Consensus 276 ~~~~~~l~sgs-~-dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~- 351 (502)
|+|+ +|+... . +..|.+.|+.+++.+..+.- .+...-...+... +.+-+.||.....-+........ ....
T Consensus 114 ~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeeee
Confidence 9965 555443 3 78999999999999988864 2222222222222 22334455554433332211110 0000
Q ss_pred -c--CCe-eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-------eccCCCeeEEEEcCCCCCEE
Q 010748 352 -A--ADV-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 352 -~--~~v-~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~~l 420 (502)
. ..+ ..-.|.+.++..++++.+ |.|++.|+....... ......+ ....+.+.-++++|++.+++
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----cceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 0 000 000344523346666666 999999975542111 1111111 12344555699999984444
Q ss_pred EEEe---------CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCcccccc
Q 010748 421 ATGS---------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 421 ~t~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
+... ..+.|.++|..+.+. +..+.. ...+..++++||++ .++++...++.|.|+|+.+++.+++.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 4331 125799999998873 333332 35789999999999 65555557889999999999998876
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.19 E-value=2.1e-09 Score=97.09 Aligned_cols=235 Identities=15% Similarity=0.220 Sum_probs=169.3
Q ss_pred CCCCEEEEecCCCcEEEeeC-CCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 207 EKGNFMAVGSMEPAIEIWDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
|...-+++.+.|.+++||-- +.++.... ....-..+++++++++. ...|+.|
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wps--------------------------I~~~mP~~~~~~~y~~e-~~~L~vg 86 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPS--------------------------IYHYMPSPCSAMEYVSE-SRRLYVG 86 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCch--------------------------hhhhCCCCceEeeeecc-ceEEEEE
Confidence 45666899999999999953 32221111 11134578999999998 5589999
Q ss_pred ecCCcEEEEeCC----CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeC
Q 010748 286 SADKQVKIWDVA----AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 361 (502)
Q Consensus 286 s~dg~v~vwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~ 361 (502)
-..|++.-+.+. ....++....|...|..+-|+-.. ..+++.+.|..+.---.+.+.... ........+++.+.
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg-~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG-GYNFETPASALQFD 164 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc-ceEeeccCCCCcee
Confidence 999999988654 345566677899999999998766 788888888877544444443332 12222222222222
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
- . +.++|...|.|..-.+.... ..++.++.+|...+.+++|.|.. .+|.+|..|..+.+||+...+. .
T Consensus 165 ~--~-~~fvGd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~ 232 (404)
T KOG1409|consen 165 A--L-YAFVGDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-T 232 (404)
T ss_pred e--E-EEEecccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-e
Confidence 2 1 55666667776665554332 37788999999999999999976 9999999999999999987653 4
Q ss_pred EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
.....+|...|..+...+--+ .|.+++.||.|.+|++....
T Consensus 233 ~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 233 AYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecccee
Confidence 567778889999988888777 58889999999999996543
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.18 E-value=3.3e-08 Score=106.58 Aligned_cols=314 Identities=15% Similarity=0.224 Sum_probs=188.7
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEE--ecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYIL--EESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g 215 (502)
....|-++.+.++...|+++...| .|..+ +.... .....--..+..-..|++| |||+.+||..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~G-----di~~~~~~~~~~---~~~~E~VG~vd~GI~a~~W-------SPD~Ella~v 138 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASG-----DIILVREDPDPD---EDEIEIVGSVDSGILAASW-------SPDEELLALV 138 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCc-----eEEEEEccCCCC---CceeEEEEEEcCcEEEEEE-------CCCcCEEEEE
Confidence 456899999999999999999888 45544 22111 1111111224444578899 8999999999
Q ss_pred cCCCcEEEeeCCCCCCcCcc-----------eec---CCcchh-hhhhccc----cCCcccc---cccccCcccceeeEE
Q 010748 216 SMEPAIEIWDLDVIDEVQPH-----------VIL---GGIDEE-KKKKKSK----KGKKSSI---KYKKGSHTDSVLGLA 273 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~-----------~~l---~~~~~~-~~~~~~~----~~~~~~~---~~~~~~h~~~V~~l~ 273 (502)
+.+++|.+..-+ .+.+... .+- |++..+ +.+..+. ....... ...+. +.+.-..|+
T Consensus 139 T~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 139 TGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred eCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 999998876432 1111100 000 111000 0000000 0000000 11222 555677899
Q ss_pred eccCCCcEEEEEec---C---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEecCCCCC
Q 010748 274 WNKEFRNILASASA---D---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARISTH 344 (502)
Q Consensus 274 ~~~~~~~~l~sgs~---d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~ 344 (502)
|-.| +.++|+.+. . ..++||+- .|....+...-.+--.+++|.|.| +++++.-. ...|.+|.-+.-+.
T Consensus 217 WRGD-G~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrh 293 (928)
T PF04762_consen 217 WRGD-GEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRH 293 (928)
T ss_pred ECCC-CcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEe
Confidence 9999 558887765 2 47999994 476555554444445678999999 77777654 34566776554433
Q ss_pred ccceE---eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEE
Q 010748 345 SGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLL 420 (502)
Q Consensus 345 ~~~~~---~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l 420 (502)
..... .....|..+.|++++. ++++...+. |.+|-..+.. .-..+.+... ...+..+.|+|..+..|
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 32222 2345789999999876 677666544 9999887652 2222333322 23455599999887888
Q ss_pred EEEeCCCcEEEEEC----CCC----------------CeeEE--------------EEecCCCCcEEEEEEcCCCCcEEE
Q 010748 421 ATGSTDKMVKLWDL----SNN----------------QPSCI--------------ASRNPKAGAVFSVAFSEDSPFVLA 466 (502)
Q Consensus 421 ~t~s~dg~i~vwd~----~~~----------------~~~~~--------------~~~~~~~~~v~~~~~spd~~~ll~ 466 (502)
...+..|.+..+++ ..+ ....+ ..+. ...+|.+++|++++. .++
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~a 442 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFA 442 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEE
Confidence 88887777665443 111 10111 1111 246799999999987 488
Q ss_pred EEeCCCcEEEEECCCC
Q 010748 467 IGGSKGKLEIWDTLSD 482 (502)
Q Consensus 467 sg~~dg~i~vwd~~~~ 482 (502)
+-..+|.|.+|.....
T Consensus 443 vl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEECCCCEEEEEecCC
Confidence 8899999999986543
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-08 Score=97.38 Aligned_cols=284 Identities=14% Similarity=0.176 Sum_probs=176.1
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----
Q 010748 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS---- 216 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~---- 216 (502)
.....+++++|+++|.+..+ .++++..... . ..+..... - .+++.|||-|+||.+--
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~------~v~i~~~~~~---~-~~lt~~~~--~-------~~~L~fSP~g~yL~T~e~~~i 96 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQ------VVKVFEIATL---K-VVLCVELK--K-------TYDLLFSPKGNYLLTWEPWAI 96 (566)
T ss_pred cceeEEEcCCCcEEEEEcCC------eEEEEEccCC---c-EEEEeccc--e-------eeeeeeccccccccccccccc
Confidence 36778899999999988755 7777776654 1 11111111 1 22344588898888621
Q ss_pred ------CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 217 ------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 217 ------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
....+.+|++.++-.... . ....... +++.|+.+ . .|++=-..+.
T Consensus 97 ~~~~~~~~pn~~v~~vet~~~~s~-~-------------------------q~k~Q~~-W~~qfs~d-E-sl~arlv~ne 147 (566)
T KOG2315|consen 97 YGPKNASNPNVLVYNVETGVQRSQ-I-------------------------QKKMQNG-WVPQFSID-E-SLAARLVSNE 147 (566)
T ss_pred ccCCCCCCCceeeeeeccceehhh-e-------------------------ehhhhcC-cccccccc-h-hhhhhhhcce
Confidence 124577998876211110 0 0011222 68899988 3 3433344577
Q ss_pred EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCc-EEEE-----EeCCCcEEEEecCCCCCc---cceEeecCCeeEEEeC
Q 010748 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ-ILLS-----GSFDRSVVMKDARISTHS---GFKWAVAADVESLAWD 361 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s-----~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~~v~~~ 361 (502)
|++|++..-+.... .-|...|+.+.++|.... .+++ .+.-+.|+||........ ....-....-..+.|+
T Consensus 148 v~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN 226 (566)
T KOG2315|consen 148 VQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWN 226 (566)
T ss_pred EEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEec
Confidence 99999877432221 236788999999998433 3332 345568999987632211 1111123344567888
Q ss_pred CCCCCEEEEEeC-----------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE-EeCCCcE
Q 010748 362 PHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMV 429 (502)
Q Consensus 362 ~~~~~~~~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-~s~dg~i 429 (502)
+-+..+|+..+. ..+++++++... ..+..+ ...++|.++.|+|.+..+.++ |-.-..+
T Consensus 227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~---------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE---------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKV 296 (566)
T ss_pred cCCceEEEEEEEeecCCCccccccceEEEEEecCc---------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceE
Confidence 877666655542 235777777622 222222 347899999999998555444 4456789
Q ss_pred EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCcccccc
Q 010748 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~--dg~i~vwd~~~~~~~~~~ 488 (502)
.|||++.. .++.+ ..++-+++-|+|.|++++++|-. .|.|-|||+.+.+++.+.
T Consensus 297 tifnlr~~---~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 297 TIFNLRGK---PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEEcCCCC---EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 99998754 34444 46788999999999975555433 389999999998877654
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.16 E-value=1.2e-08 Score=89.40 Aligned_cols=238 Identities=15% Similarity=0.082 Sum_probs=152.3
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.--+||.|+..|...+|...+.+..... -..|...|+-+.=..+...-+..++.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~--------------------------cd~snn~v~~~~r~cd~~~~~~i~sn 136 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQ--------------------------CDVSNNDVTLVKRYCDLKFPLNIASN 136 (344)
T ss_pred cccEEEeccccceeeeecccCcccceee--------------------------ecccccchhhhhhhcccccceeeccC
Confidence 4568999999999999998764432211 11222222222111122234667888
Q ss_pred CCcEEEEeCCCCeeeEeeccCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce---EeecCCeeEEEeCC
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDP 362 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~ 362 (502)
|.++++.++.-+..... .|.. .+.++.+++++ +++++.+....|.+|.+......... ......-.+.+|+.
T Consensus 137 dht~k~~~~~~~s~~~~--~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFA--VHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred CcceeEEEEecCcccce--eeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 99999998865432222 2333 37899999999 89999999999999988765433222 12344567888988
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCCeeE
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
... .|++++.||++.|||+|...... .....+...|.+.+..+.|++.|+- +|+..-.-+.+.|.|+++.....
T Consensus 214 ~~~-~FAv~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 214 NDL-QFAVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred Ccc-eEEEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 654 89999999999999999873211 1112233458999999999986643 33444445779999999986433
Q ss_pred EEEecC------CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 442 IASRNP------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 442 ~~~~~~------~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+..... ....|+...|+.++.. +.+.+.+ .+.=|++.+
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEecCccccccccccccccccccCCCcc-cccccch-hhheeeccc
Confidence 333222 2245888888888764 3333333 344455543
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=7.1e-10 Score=100.11 Aligned_cols=206 Identities=13% Similarity=0.234 Sum_probs=140.8
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-----eeEeeccCC------------CCeEEEEEcCCCC-cEEE
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----CNLTLEHHT------------DKVQAVAWNHHSP-QILL 326 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~~-~~l~ 326 (502)
..+-|.++.|... +.+||+|..+|.|.++.-.... ....++.|. .+|..+.|.+++. ..++
T Consensus 24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 4577999999998 5699999999999999644322 233444443 4688999987653 5677
Q ss_pred EEeCCCcEEEEecCCCCCcc--------------------c----------------eEeecCCeeEEEeCCCCCCEEEE
Q 010748 327 SGSFDRSVVMKDARISTHSG--------------------F----------------KWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 327 s~s~dg~i~iwd~~~~~~~~--------------------~----------------~~~~~~~v~~v~~~~~~~~~~~~ 370 (502)
..+.|.+|++|.++...... . ...|.-.|.+++++.+.. .+.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t~l 180 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--TFL 180 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--eEe
Confidence 88899999999986432111 0 012345688899988765 445
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCccceEEecc-----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee----E
Q 010748 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----C 441 (502)
Q Consensus 371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~----~ 441 (502)
+..|=.|.+|++.-.... -.+.-+..+ +.-|++..|+|...++++-.+..|+|++.|++...+. .
T Consensus 181 SADdLRINLWnlei~d~s------FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQS------FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred eccceeeeeccccccCCc------eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 557889999998765221 112222222 3468999999987789999999999999999954310 1
Q ss_pred EEEe----------cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 442 IASR----------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 442 ~~~~----------~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
++.. ..-...|..+.|+++|+| +++- .--+|+|||+..
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGry-ilsR-Dyltvk~wD~nm 302 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSR-DYLTVKLWDLNM 302 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEe-ccceeEEEeccc
Confidence 1111 112346888999999997 4432 236899999943
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=3.3e-07 Score=84.18 Aligned_cols=289 Identities=11% Similarity=0.182 Sum_probs=175.2
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
.+.+..+-|+|+|+.+.|-++...++...+-.|.++...+ .|..-....+++-|.|- ++.+++|++|+++.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G---~Lt~ln~~~~~g~~p~y------vsvd~~g~~vf~An 107 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG---RLTFLNRQTLPGSPPCY------VSVDEDGRFVFVAN 107 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC---eEEEeeccccCCCCCeE------EEECCCCCEEEEEE
Confidence 3456788899999999999988887777788888887655 55544445555555432 22278999999987
Q ss_pred CC-CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec-CCcEEEE
Q 010748 217 ME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIW 294 (502)
Q Consensus 217 ~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-dg~v~vw 294 (502)
.. |.|.++-+.....+.+..-.-.+.. . ...... -+.-+.+..+.|+++ +|++..- --.|.+|
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g----------~-~p~~rQ---~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y 172 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQVVKHTG----------S-GPHERQ---ESPHVHSANFTPDGR-YLVVPDLGTDRIFLY 172 (346)
T ss_pred ccCceEEEEEcccCCccccceeeeecCC----------C-CCCccc---cCCccceeeeCCCCC-EEEEeecCCceEEEE
Confidence 65 8999999865333322211100000 0 000001 112277888999954 6655532 3469999
Q ss_pred eCCCCeeeEeec---cCCCCeEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCC-ccce---------EeecCCeeEEEe
Q 010748 295 DVAAGKCNLTLE---HHTDKVQAVAWNHHSPQILLS-GSFDRSVVMKDARISTH-SGFK---------WAVAADVESLAW 360 (502)
Q Consensus 295 d~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~-~~~~---------~~~~~~v~~v~~ 360 (502)
++..|+....-. .-......|.|||++ ++... .-.+++|.+|....... ...+ +........+..
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 999876433221 234567899999999 55544 45689999999877421 1111 122345678889
Q ss_pred CCCCCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC-CcEEEEECCC--
Q 010748 361 DPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-KMVKLWDLSN-- 436 (502)
Q Consensus 361 ~~~~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d-g~i~vwd~~~-- 436 (502)
+++|+ +|+++ .....|.+|.+...... ...+.....+...-..+.|++.+ ++|+++..+ .+|.+|....
T Consensus 252 s~dGr-FLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 252 SPDGR-FLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCC-EEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcCCC
Confidence 99887 55554 33447888887754210 11222233444556889999988 777777664 5688886654
Q ss_pred CCeeEEEEecCCCCcEEEEEEc
Q 010748 437 NQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~s 458 (502)
++...+.. ........|+.|.
T Consensus 325 G~L~~~~~-~~~~p~Pvcv~f~ 345 (346)
T COG2706 325 GRLTLLGR-YAVVPEPVCVKFL 345 (346)
T ss_pred ceEEeccc-ccCCCCcEEEEEc
Confidence 44222222 1233445566654
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=6.5e-09 Score=102.29 Aligned_cols=126 Identities=16% Similarity=0.335 Sum_probs=91.0
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
.|++| +....|+|+|+.||.++|..+.+...-....-|. ..........+.||...|.-+.
T Consensus 18 ~c~~W-------Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla------------a~snLsmNQtLeGH~~sV~vvT 78 (1189)
T KOG2041|consen 18 HCAEW-------NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA------------AASNLSMNQTLEGHNASVMVVT 78 (1189)
T ss_pred EEEEE-------cccCCeEEeccccceeEEEEccccCCcccccccc------------cccccchhhhhccCcceEEEEE
Confidence 48888 5778999999999999999986532211100010 1112333446779999999999
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
|+.+ ...|-+...+|.|.||-+-.|.-...+ ....+-|.+++|+.+| ..+.....||.|.+=.+.
T Consensus 79 WNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 79 WNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred eccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeec
Confidence 9998 568999999999999998877644333 2245678999999999 777777888877664443
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=2.6e-09 Score=95.20 Aligned_cols=253 Identities=18% Similarity=0.254 Sum_probs=159.9
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCC-CcCc-ceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVID-EVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNIL 282 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~-~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l 282 (502)
...|.|||+|...|.|.+|.-.... +... ++.++++... --......-...|..+.|..+ +++.+
T Consensus 35 d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E------------FDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 35 DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE------------FDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccccceEeecCCCceEEEeecccccccchhhhhhhcccccc------------hhhhhhccHHHHhhheeeecCCCcceE
Confidence 5679999999999999999764321 1110 0111111000 000000012356888888654 55677
Q ss_pred EEEecCCcEEEEeCCCCe-------------------e-----------------------eEee-ccCCCCeEEEEEcC
Q 010748 283 ASASADKQVKIWDVAAGK-------------------C-----------------------NLTL-EHHTDKVQAVAWNH 319 (502)
Q Consensus 283 ~sgs~dg~v~vwd~~~~~-------------------~-----------------------~~~~-~~h~~~v~~l~~~~ 319 (502)
+..+.|.+|++|.+.... + .+.+ ..|...|.++.|+.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 778899999999875320 0 0011 34677788999998
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCccceEe--------ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391 (502)
Q Consensus 320 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~ 391 (502)
+. ..++++ .|=.|.+|++........... ...-|++..|+|...+.|..++..|.|++-|+|........
T Consensus 183 D~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 DK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred ch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 87 555554 577899999876554322221 12348899999988888999999999999999965321111
Q ss_pred CCCccceE----------EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC------------
Q 010748 392 TSQQSSFT----------LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA------------ 449 (502)
Q Consensus 392 ~~~~~~~~----------~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~------------ 449 (502)
..++. +..-...|+.+.|+++| +++++-.. -+|++||++..+. ++.+.+.|.
T Consensus 261 ---~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 261 ---KKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred ---hhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccC-CceeechHHHHHHHHHhhhhc
Confidence 11111 12234678899999988 78877554 5799999987652 556655442
Q ss_pred CcE---EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 450 GAV---FSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 450 ~~v---~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
..| +.+.|+.+... +.+|+..+..-+|-+
T Consensus 335 DaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~ 366 (460)
T COG5170 335 DAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPT 366 (460)
T ss_pred cceeeeEEEEecCCccc-ccccccccceeeecc
Confidence 223 46788888875 777887777777653
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=2.7e-08 Score=87.12 Aligned_cols=201 Identities=13% Similarity=0.016 Sum_probs=136.5
Q ss_pred cEEEEEecCCcEEEEeCCCCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748 280 NILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 280 ~~l~sgs~dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 358 (502)
.+||.|+..|...+|...+.+....+ ..|...|+-+.=.-+...-+..++.|.+++++++.............-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 38999999999999999876543332 33444343222111222346677888888888887554332222111337889
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccce-EEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
++++++. +.++.+....|..|.+..... ..+. .....+..-.+.+|+... ..+|++..||++.|||++..
T Consensus 165 ~~snd~~-~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 165 HYSNDPS-WGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred EEcCCCc-eEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence 9999866 777778888999999876521 2222 333445556788899876 89999999999999999876
Q ss_pred Cee---EEEEecCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCccccccc
Q 010748 438 QPS---CIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 438 ~~~---~~~~~~~~~~~v~~~~~spd~~~-ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
... ...+.+.|.|.++.+.|++.|.. ||...-.-+.+.|-|+++......+.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 432 23345678999999999987643 23333445789999999988765544
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.4e-10 Score=110.66 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=144.0
Q ss_pred ccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC-------CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 010748 260 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA-------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR 332 (502)
Q Consensus 260 ~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg 332 (502)
..+.||+..|..++--.+ .+-++++|.|++|++|.++ +..|..+++.|+.+|..+.|-.+. ++++ +.||
T Consensus 729 ~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDG 804 (1034)
T ss_pred ecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--eccC
Confidence 356799999999987666 6789999999999999986 335788899999999999998876 5554 5689
Q ss_pred cEEEEecCCCCCccc-eEe-ecCCeeEEEeCCC-CCCEEEEE-eCCCcEEEEECCCCCCCCCCCCCccceEE---eccCC
Q 010748 333 SVVMKDARISTHSGF-KWA-VAADVESLAWDPH-AEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDK 405 (502)
Q Consensus 333 ~i~iwd~~~~~~~~~-~~~-~~~~v~~v~~~~~-~~~~~~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~~h~~ 405 (502)
.|.+||.-.++.... .+. ..+.+..+..-++ ...++++| +...+|+++|.|...- .+-+.. .+...
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-------~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-------TCELKVCNAPGPNA 877 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-------eeeEEeccCCCCch
Confidence 999999766655432 221 1222222322222 22344444 7888999999998631 222222 34456
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE-EECCCCcc
Q 010748 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI-WDTLSDAG 484 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~v-wd~~~~~~ 484 (502)
-+.+++..+.| +.++++-..|.|.+.|.++++ .+............++ .|..++ |+....|.++.| |-...+..
T Consensus 878 ~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~--vINswrpmecdllqla-apsdq~-L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 878 LTRAIAVADKG-NKLAAALSNGCIAILDARNGK--VINSWRPMECDLLQLA-APSDQA-LAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred heeEEEeccCc-chhhHHhcCCcEEEEecCCCc--eeccCCcccchhhhhc-CchhHH-HHhhcccceeEeeehhcCCee
Confidence 68899999988 899999999999999999997 2333332222233333 244553 777777888888 87766654
Q ss_pred c
Q 010748 485 I 485 (502)
Q Consensus 485 ~ 485 (502)
.
T Consensus 953 h 953 (1034)
T KOG4190|consen 953 H 953 (1034)
T ss_pred e
Confidence 3
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=8.6e-10 Score=118.32 Aligned_cols=186 Identities=17% Similarity=0.247 Sum_probs=139.3
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg 219 (502)
+.|.++.=||...+.++|+.++ .+++|.|..+. .+++...... +.... ..|+.+|+.+.++..||
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dg---sv~~~~w~~~~----~v~~~rt~g~-s~vtr-------~~f~~qGnk~~i~d~dg 2273 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDG---SVRMFEWGHGQ----QVVCFRTAGN-SRVTR-------SRFNHQGNKFGIVDGDG 2273 (2439)
T ss_pred CceeeecCCCCCceEEecCCCc---eEEEEeccCCC----eEEEeeccCc-chhhh-------hhhcccCCceeeeccCC
Confidence 5688899999999999999887 56777776554 4444443222 22222 23477899999999999
Q ss_pred cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe---cCCcEEEEeC
Q 010748 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDV 296 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs---~dg~v~vwd~ 296 (502)
.+.+|... .++....+.|......+.|-. ..+++++ .++.+.+||.
T Consensus 2274 ~l~l~q~~----------------------------pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2274 DLSLWQAS----------------------------PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred ceeecccC----------------------------CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhc
Confidence 99999986 122223446888888888875 3666664 4688999996
Q ss_pred CCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748 297 AAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 297 ~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 373 (502)
.-. .++. ..|.+.++++++-|.. ++|++|+.+|.|++||++..+....... ++ ...+|++|+.
T Consensus 2323 l~~~~~s~v~--~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss 2388 (2439)
T KOG1064|consen 2323 LLPPMNSLVH--TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSS 2388 (2439)
T ss_pred ccCcccceee--eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCc
Confidence 432 2333 7799999999999999 9999999999999999998765542222 33 3458999999
Q ss_pred CCcEEEEECCCC
Q 010748 374 DGTIKGFDIRTA 385 (502)
Q Consensus 374 dg~v~i~d~~~~ 385 (502)
.|.++||++...
T Consensus 2389 ~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2389 EGNIKIWRLSEF 2400 (2439)
T ss_pred ccceEEEEcccc
Confidence 999999999876
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=9.5e-10 Score=108.44 Aligned_cols=221 Identities=18% Similarity=0.279 Sum_probs=156.9
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-CcEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s 284 (502)
+|.|+-+|.++.-|.. +-|++.. ..|... ....-.-.|-...|+|.. ..+-++
T Consensus 33 ~p~grdi~lAsr~gl~-i~dld~p--~~ppr~-----------------------l~h~tpw~vad~qws~h~a~~~wiV 86 (1081)
T KOG0309|consen 33 NPSGRDIVLASRQGLY-IIDLDDP--FTPPRW-----------------------LHHITPWQVADVQWSPHPAKPYWIV 86 (1081)
T ss_pred ccccchhhhhhhcCeE-EEeccCC--CCCcee-----------------------eeccCcchhcceecccCCCCceeEE
Confidence 6778888888876654 5577531 111111 000112246677787752 123333
Q ss_pred EecCCcEEEEeCCCC---eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecCCeeEEEe
Q 010748 285 ASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAW 360 (502)
Q Consensus 285 gs~dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~ 360 (502)
......-.+|++... ..-..+-+|+..|+.+.|+|+.+.++++++.|-.+..||+|++......+ ........|.|
T Consensus 87 sts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 87 STSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKW 166 (1081)
T ss_pred ecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeee
Confidence 344456678988533 33445578999999999999999999999999999999999987655433 34566788999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010748 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
+...++ +++.+....|++||++.+ ..++..+.+|...|.++.|+......+.+++.|++|++||.......
T Consensus 167 nyk~p~-vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 167 NYKDPN-VLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred cccCcc-hhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 987774 556666778999999998 68899999999999999999876678999999999999998765432
Q ss_pred EEEEecCCCCcEEEEEEcCCCC
Q 010748 441 CIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 441 ~~~~~~~~~~~v~~~~~spd~~ 462 (502)
..... ....+|+.-.+.|-|.
T Consensus 238 ~~~~v-tt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 238 SKRTV-TTNFPIWRGRYLPFGE 258 (1081)
T ss_pred cceec-cccCcceeccccccCc
Confidence 22222 2345677777777553
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=8e-08 Score=92.30 Aligned_cols=282 Identities=14% Similarity=0.205 Sum_probs=164.0
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC---
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--- 218 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d--- 218 (502)
-+-+.|||-|.+|++-...| +.+|-=..-.. ... ..| ..+.++++ ||..+||+|-+..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G----I~lWGG~~f~r--~~R-F~H--------p~Vq~idf----SP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG----IALWGGESFDR--IQR-FYH--------PGVQFIDF----SPNEKYLVTYSPEPII 273 (698)
T ss_pred eeeEEecCCceEEEEEeccc----eeeecCccHHH--HHh-ccC--------CCceeeec----CCccceEEEecCCccc
Confidence 46789999999999988775 45553221110 011 112 13344433 8999999986543
Q ss_pred --------CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 219 --------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 219 --------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
..|+|||+.++..+..+.++. +....-.-+.||.+ ..++|.-.. .+
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------------------------~~~~~WP~frWS~D-dKy~Arm~~-~s 327 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRSFPVIK------------------------SPYLKWPIFRWSHD-DKYFARMTG-NS 327 (698)
T ss_pred cCcccCCCceEEEEEccccchhcceeccC------------------------CCccccceEEeccC-CceeEEecc-ce
Confidence 468999999887665543321 11122334579988 557776666 57
Q ss_pred EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-----CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC
Q 010748 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 365 (502)
|.||+..+-.++-.-.-.-..|....|+|.+ ++|+-=+. -..+.+..+.+.+.+....-+.-.-..+-|-.+|.
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 9999976643332222234678888999987 66653221 12344444433332221111111112344554444
Q ss_pred CEEEE----------EeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEE
Q 010748 366 HSFVV----------SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWD 433 (502)
Q Consensus 366 ~~~~~----------~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd 433 (502)
+|++ .+.-..+.|+.++.. ..++-... -...|...+|-|.|.++.+..+. ..++.+|-
T Consensus 407 -yLcvkvdR~tK~~~~g~f~n~eIfrireK--------dIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 407 -YLCVKVDRHTKSKVKGQFSNLEIFRIREK--------DIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYA 476 (698)
T ss_pred -EEEEEEEeeccccccceEeeEEEEEeecc--------CCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEE
Confidence 2222 111224667777765 23443333 45678999999999555444444 35688888
Q ss_pred CCC--CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEE--eCCCcEEEEECCC
Q 010748 434 LSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG--GSKGKLEIWDTLS 481 (502)
Q Consensus 434 ~~~--~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg--~~dg~i~vwd~~~ 481 (502)
+.+ .++.++..+.. ...+.+.|+|.|+++++.+ |..|.+.++|+.-
T Consensus 477 ~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 477 VETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 773 33344444443 5678899999999865543 3478999999975
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.04 E-value=4.6e-07 Score=80.81 Aligned_cols=237 Identities=15% Similarity=0.210 Sum_probs=134.9
Q ss_pred ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCc--ceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010748 145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP--LCMAWLDCPLKDREKGNFMAVGSMEPAIE 222 (502)
Q Consensus 145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~la~g~~dg~I~ 222 (502)
+..+++|++||+.... .|+|..-...-. .....-..+-..+| -.++| |||+.+||.+...|+|+
T Consensus 3 ~~~~~~Gk~lAi~qd~----~iEiRsa~Ddf~---si~~kcqVpkD~~PQWRkl~W-------SpD~tlLa~a~S~G~i~ 68 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ----CIEIRSAKDDFS---SIIGKCQVPKDPNPQWRKLAW-------SPDCTLLAYAESTGTIR 68 (282)
T ss_pred eeecCCCcEEEEEecc----EEEEEeccCCch---heeEEEecCCCCCchheEEEE-------CCCCcEEEEEcCCCeEE
Confidence 4567899999888643 567766554443 33222233333333 13444 99999999999999999
Q ss_pred EeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-----CcEEEEEecCCcEEEEeCC
Q 010748 223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNILASASADKQVKIWDVA 297 (502)
Q Consensus 223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~~~l~sgs~dg~v~vwd~~ 297 (502)
+||+...... . +.++ . .....-..+|..|.|.+.. ...|+.-...|.++-|-+.
T Consensus 69 vfdl~g~~lf-~--I~p~---------------~---~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 69 VFDLMGSELF-V--IPPA---------------M---SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEecccceeE-E--cCcc---------------c---ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 9998642221 1 1000 0 0011234677778776542 2356666777888777653
Q ss_pred CC-----eeeEee---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEE
Q 010748 298 AG-----KCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 369 (502)
Q Consensus 298 ~~-----~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~ 369 (502)
.+ +..++| ..+...|.++.|+|.. ++|++|+.... +.. ........+++-..-.+.+.+..
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~----~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDG----MSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCc----cccccccCceEEEEcCCCCcEEE
Confidence 22 333444 2357799999999998 67777665332 000 01111222333222222232222
Q ss_pred EE-eCCCc------EEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748 370 VS-LEDGT------IKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 370 ~~-~~dg~------v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
+. ..++. ..+|.+-+ ...+.. ......|..|..||+| .+||+...+|.|.+|++.+-+
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~----------~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPS----------FKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccccCccccccccccceeeccc----------eeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence 22 22221 12222221 111111 2245679999999998 999999999999999998765
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=5.7e-07 Score=80.23 Aligned_cols=196 Identities=16% Similarity=0.245 Sum_probs=117.3
Q ss_pred cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-------CCCCeEEEEEcCCC-----CcEEEEEeCCCcE
Q 010748 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHS-----PQILLSGSFDRSV 334 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~-----~~~l~s~s~dg~i 334 (502)
-.-+.++|+|+ ..+||.+...|+|+++|+.... +..+.. .+..|..|.|.+.. ...|++-.+.|.+
T Consensus 44 PQWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 44 PQWRKLAWSPD-CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred chheEEEECCC-CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 34678999999 6699999999999999987533 233321 23567777775432 2467888889999
Q ss_pred EEEecCCCCCccce----E----eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCC
Q 010748 335 VMKDARISTHSGFK----W----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 406 (502)
Q Consensus 335 ~iwd~~~~~~~~~~----~----~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~ 406 (502)
+-|-+..+...... + ..+..|.++.|+|... +|++|+.... ..+ ...+....
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~------~~~-------------~s~a~~~G 181 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQN------QDG-------------MSKASSCG 181 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCC------CCc-------------cccccccC
Confidence 88876433211111 1 2366899999999755 5555543221 000 00112223
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCc------EEEEECCCCCeeEEEEe-cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 407 VCTISYNPLVPNLLATGST-DKM------VKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 407 v~~l~~sp~~~~~l~t~s~-dg~------i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
+++-..-...|.+..+.+. ++. ..+|.+-+.+ .+.. ......|..|..||||. +||+...+|.|.+|+
T Consensus 182 LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 182 LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK---FFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWE 257 (282)
T ss_pred ceEEEEcCCCCcEEEccccCccccccccccceeecccee---eeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEe
Confidence 3333333322333322222 221 2344433322 2222 23456799999999999 699999999999999
Q ss_pred CCCCcccccc
Q 010748 479 TLSDAGISNR 488 (502)
Q Consensus 479 ~~~~~~~~~~ 488 (502)
+-+-...+..
T Consensus 258 iPsL~~~~~W 267 (282)
T PF15492_consen 258 IPSLRLQRSW 267 (282)
T ss_pred cCcchhhccc
Confidence 9887665543
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=1.2e-07 Score=94.45 Aligned_cols=298 Identities=12% Similarity=0.110 Sum_probs=192.7
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCC---CCCC--CCEE
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK---DREK--GNFM 212 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~s~~--~~~l 212 (502)
+.....++.|+|.|. ||.|+.. -|.+.+...-+......+|. +....+.|.+...- +||. .-+|
T Consensus 14 ~~sN~~A~Dw~~~GL-iAygshs------lV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGL-IAYGSHS------LVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred CcccccccccCccce-EEEecCc------eEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeE
Confidence 444578899999984 5555533 45555544432223334443 44578889765432 2332 4467
Q ss_pred EEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC---CCcEEEEEecCC
Q 010748 213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNILASASADK 289 (502)
Q Consensus 213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~l~sgs~dg 289 (502)
|++...|.|.+||+... .....+..|.++|..++|-+. .+.+|+.-....
T Consensus 83 AsaD~~GrIil~d~~~~---------------------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss 135 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLA---------------------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS 135 (1062)
T ss_pred EeccccCcEEEEEehhh---------------------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence 78888899999998642 223345578899999999653 346777777788
Q ss_pred cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---ccceE----eecC---------
Q 010748 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKW----AVAA--------- 353 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~----~~~~--------- 353 (502)
+|.+|+..+|+.+...........|+.+.|-..+.+..-+..|.+.+.+.-..+. ....+ .|..
T Consensus 136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence 9999999999999888776777888999998877777777778777776532111 11111 1100
Q ss_pred ----------------CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748 354 ----------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 354 ----------------~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
-...++|+|+-.+.+++. -...+.++|+.-. .++.......+.+.-+.+-|+..
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~---------~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYE---------CCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhh---------ceeEEEEeccCCcceeEeccCCC
Confidence 012356788766555544 4667999999875 66777776677777777777642
Q ss_pred -CEEEEEeCCCcEEEEECCCCCe-----------------eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 418 -NLLATGSTDKMVKLWDLSNNQP-----------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 418 -~~l~t~s~dg~i~vwd~~~~~~-----------------~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
..|++...||.+.+|-.+.... .++.. .....+.....+|..+..++.--++|.+.+|.+
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~--m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l 363 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP--MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQL 363 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee--chhcccceeecCCCChhhhhhhhhcchhHHHhh
Confidence 5788899999999997654210 01111 112233444556664445665667888999999
Q ss_pred CCCccc
Q 010748 480 LSDAGI 485 (502)
Q Consensus 480 ~~~~~~ 485 (502)
+++..-
T Consensus 364 ~~~ri~ 369 (1062)
T KOG1912|consen 364 SNGRIH 369 (1062)
T ss_pred hcCCcC
Confidence 876543
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=4.4e-07 Score=90.07 Aligned_cols=196 Identities=12% Similarity=0.037 Sum_probs=120.3
Q ss_pred ceeeEEeccCCCcEEEEEec---CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEecCCC
Q 010748 268 SVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARIS 342 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~---dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~i~iwd~~~~ 342 (502)
.+....|+|++..+++..+. ...|.++|+.+++...... ..+......|+|+|..++++.+.+ ..|.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 67789999996644554333 3469999998886544333 455667788999996666666555 45777787766
Q ss_pred CCccceEeecCCeeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748 343 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 343 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 420 (502)
.... ............|+|+|..+++++...| .|+++|+.++. . ..+..... ....|+|+|..++
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---------~-~rlt~~g~--~~~~~SPDG~~Ia 334 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---------V-EQVVFHGK--NNSSVSTYKNYIV 334 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---------e-EeCccCCC--cCceECCCCCEEE
Confidence 5333 2223333445689999987777765555 47777776552 1 11111111 1248999994444
Q ss_pred EEEeCC--------CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEECCC
Q 010748 421 ATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLS 481 (502)
Q Consensus 421 ~t~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~--i~vwd~~~ 481 (502)
++.... ..|.+.|+.++....+.. . +......|+|||+.++.+....+. |.+.++..
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 444332 368888988877433322 1 223358899999976555544444 55666644
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=6.4e-07 Score=98.63 Aligned_cols=168 Identities=9% Similarity=0.153 Sum_probs=112.0
Q ss_pred eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc---------C------CCCeEEEEEcCCCCcEEEEEeCCCc
Q 010748 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---------H------TDKVQAVAWNHHSPQILLSGSFDRS 333 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~---------h------~~~v~~l~~~~~~~~~l~s~s~dg~ 333 (502)
-.+++|+|+++.++++.+.++.|++||..++... .+.+ + -.....|+++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 3588999965777888888899999999877543 2211 1 1245679999998557777788899
Q ss_pred EEEEecCCCCCccce------------Ee---------ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCC
Q 010748 334 VVMKDARISTHSGFK------------WA---------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 392 (502)
Q Consensus 334 i~iwd~~~~~~~~~~------------~~---------~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~ 392 (502)
|++||+.++...... +. .-.....+++++++. ++++-+.++.|++||..+........
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence 999999865421100 00 011346788999765 77888889999999997652100000
Q ss_pred CCcc----ceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 393 SQQS----SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 393 ~~~~----~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
.... -....+.-.....++++++| +++++-+.++.|++||+.+++.
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 0000 00011122356789999998 8888889999999999988753
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.5e-07 Score=93.88 Aligned_cols=241 Identities=17% Similarity=0.172 Sum_probs=162.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC-------
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF------- 278 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~------- 278 (502)
+|.| +||.|+. ..|.|-|..+.+.++ ....|...|+.+.|.|..
T Consensus 24 ~~~G-LiAygsh-slV~VVDs~s~q~iq---------------------------sie~h~s~V~~VrWap~~~p~~llS 74 (1062)
T KOG1912|consen 24 SPSG-LIAYGSH-SLVSVVDSRSLQLIQ---------------------------SIELHQSAVTSVRWAPAPSPRDLLS 74 (1062)
T ss_pred Cccc-eEEEecC-ceEEEEehhhhhhhh---------------------------ccccCccceeEEEeccCCCchhccC
Confidence 5544 7888774 567777765433222 334688999999998741
Q ss_pred ----CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEecCCCCCccceEee
Q 010748 279 ----RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 279 ----~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 351 (502)
.-+||++...|.|.+||...+..+..+..|..+++.++|-+.. ..+|++-....++.+|+..+++..-.....
T Consensus 75 ~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 75 PSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred ccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 2367888889999999999999999999999999999997532 367888888899999999988754322223
Q ss_pred cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC-------------------------C
Q 010748 352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-------------------------A 406 (502)
Q Consensus 352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-------------------------~ 406 (502)
.....|+.+.|.....|...+..|.|.+-+.-........ .+..+.-..|.. .
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 3456679999988888888888888888776543321111 111111112211 0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCC--CcEEEEEeCCCcEEEEECCC
Q 010748 407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS--PFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~--~~ll~sg~~dg~i~vwd~~~ 481 (502)
...++|+|.-.+.++. .....+.|+|+.-.....+..+. .+.+.-+.+-|+. . .|.+.-.+|.+.+|-.+.
T Consensus 233 ~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd-~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRD-ALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcc-eEEEEecCCeEEEEEeec
Confidence 1235678876444443 34566999999887744444444 3444456666654 4 588899999999997655
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.96 E-value=3.6e-06 Score=91.12 Aligned_cols=304 Identities=16% Similarity=0.257 Sum_probs=184.7
Q ss_pred CccccccccccCCCceEEEEEecCCcc-eeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVS-HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~-~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
.++.-..++|..||.++|+.+.+.... .-.+.+|+.. + .|....+ .+++..-+++| .|.|++||+..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G---~L~stSE-~v~gLe~~l~W-------rPsG~lIA~~q 275 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G---ELQSTSE-PVDGLEGALSW-------RPSGNLIASSQ 275 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c---eEEeccc-cCCCccCCccC-------CCCCCEEEEEE
Confidence 455677899999999999998743322 3344555544 2 4443333 56666677888 79999999876
Q ss_pred C---CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748 217 M---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 217 ~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v 293 (502)
. ...|.+|.-+.... ......+......|..|+||++ +.+||....|. |.+
T Consensus 276 ~~~~~~~VvFfErNGLrh------------------------geF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~~-vqL 329 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLRH------------------------GEFTLRFDPEEEKVIELAWNSD-SEILAVWLEDR-VQL 329 (928)
T ss_pred EcCCCcEEEEEecCCcEe------------------------eeEecCCCCCCceeeEEEECCC-CCEEEEEecCC-ceE
Confidence 4 34566666442111 1112222245678999999999 66998877654 999
Q ss_pred EeCCCCe--eeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC----CCCC--------c-------------
Q 010748 294 WDVAAGK--CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----ISTH--------S------------- 345 (502)
Q Consensus 294 wd~~~~~--~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~--------~------------- 345 (502)
|-..+-. ..+.+. .....+..+.|+|..+..|...+.+|.+..+++. .... .
T Consensus 330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF 409 (928)
T ss_pred EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence 9887653 222222 1234455699999988888888887777665532 1100 0
Q ss_pred ----------cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE----------EeccCC
Q 010748 346 ----------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----------LHAHDK 405 (502)
Q Consensus 346 ----------~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~----------~~~h~~ 405 (502)
.........|..++|++.+. .+++-..+|.|.+|........... ....... ......
T Consensus 410 ~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 487 (928)
T PF04762_consen 410 RRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVK-PPKLLSSISLDSMDISDSELPLG 487 (928)
T ss_pred cccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCccccc-Ccchhhhcccccccccccccccc
Confidence 01123467899999999765 4888889999999986543211000 0011111 112234
Q ss_pred CeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCC-eeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 406 AVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
.+..++|.... .+++....+ ..+.++++.... ...+.......+.+..+...+... .++.-..+|.+...+...
T Consensus 488 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 488 SLRQLAWLNDD-TLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cEEEEEEeCCC-EEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCC
Confidence 57788887765 555554443 568888875432 223333334456666666666654 355567788888666554
Q ss_pred Cc
Q 010748 482 DA 483 (502)
Q Consensus 482 ~~ 483 (502)
..
T Consensus 566 ~~ 567 (928)
T PF04762_consen 566 EL 567 (928)
T ss_pred Cc
Confidence 43
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=6.8e-07 Score=84.52 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=131.4
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCccceEeec
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~ 352 (502)
|++-.+.+++..|. |...|.+...+-.++ + +|...|.-..+..++ .-++.|..|| .+-++|.++..... ....-
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL 401 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEE-eeCCc
Confidence 45545678888887 778888766554433 2 466778888888777 5789999999 99999999876544 44556
Q ss_pred CCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC----c
Q 010748 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----M 428 (502)
Q Consensus 353 ~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----~ 428 (502)
+.|.++..+|+|. .++++.....|.++|+.++ .....-....+-|+.+.|+|++ +++|-+--+| .
T Consensus 402 g~I~av~vs~dGK-~~vvaNdr~el~vididng---------nv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~ 470 (668)
T COG4946 402 GNIEAVKVSPDGK-KVVVANDRFELWVIDIDNG---------NVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQS 470 (668)
T ss_pred cceEEEEEcCCCc-EEEEEcCceEEEEEEecCC---------CeeEecccccceeEEEEEcCCc-eeEEEecCcceeeee
Confidence 7899999999876 7888888899999999987 3333344556789999999998 8998877665 5
Q ss_pred EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEE
Q 010748 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI 467 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~s 467 (502)
|+++|+.+++...+.+.. +.=.+-+|.|+++||...
T Consensus 471 Iklydm~~~Kiy~vTT~t---a~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 471 IKLYDMDGGKIYDVTTPT---AYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEEecCCCeEEEecCCc---ccccCcccCCCCcEEEEE
Confidence 899999998744343333 334567899999985443
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=3.4e-08 Score=88.23 Aligned_cols=274 Identities=13% Similarity=0.271 Sum_probs=165.3
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC--CCCe---eeeeccc--------cCCCcceeeeecCCCC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNL---YVHHHII--------IPAFPLCMAWLDCPLK 204 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~--~~~l---~~~~~~~--------~~~~~~~~~~~~~~~~ 204 (502)
..+-|+++.|..+|.+|++|-..| +|..|...... +..+ +..|+.. +......++|+.-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgG-----RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~--- 96 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGG-----RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD--- 96 (460)
T ss_pred ccceeeEEEeccccceEeecCCCc-----eEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC---
Confidence 456799999999999999997666 66666544321 1111 1223222 2223456777621
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCC--cCccee-------cCCcc-hhhhhhccccCC------cccccccccCcccc
Q 010748 205 DREKGNFMAVGSMEPAIEIWDLDVIDE--VQPHVI-------LGGID-EEKKKKKSKKGK------KSSIKYKKGSHTDS 268 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~--~~~~~~-------l~~~~-~~~~~~~~~~~~------~~~~~~~~~~h~~~ 268 (502)
.+.+.++..+.|.+|++|.+..... +....+ .++.. ..+......-.. ....+.....|.-.
T Consensus 97 --t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 97 --TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred --CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 2345667777899999999854211 000000 00000 000000000000 01111223578899
Q ss_pred eeeEEeccCCCcEEEEEecCCcEEEEeCCCCee---eEeeccCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKC---NLTLEHHT-----DKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~---~~~~~~h~-----~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
|.+++|+.+ ...+++ +.|=.|.+|++..... +.-++.|. .-|++..|+|.....+.-++..|.|++-|+|
T Consensus 175 iNSiS~NsD-~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNSD-KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecCc-hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 999999998 445555 4567899999874321 22334443 4688999999987888899999999999999
Q ss_pred CCCCcc---c-------------eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748 341 ISTHSG---F-------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404 (502)
Q Consensus 341 ~~~~~~---~-------------~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~ 404 (502)
...... . .......|..+.|++.|. ++.+..--+|++||++.. ..++.++..|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsRdyltvkiwDvnm~--------k~pikTi~~h~ 322 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSRDYLTVKIWDVNMA--------KNPIKTIPMHC 322 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEeccceEEEEecccc--------cCCceeechHH
Confidence 532210 0 011234677889999765 444555678999999988 47777776653
Q ss_pred C------------Ce---eEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748 405 K------------AV---CTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 405 ~------------~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
. .| ..+.|+.+. ..+++|+..+..-+|-.
T Consensus 323 ~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 323 DLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecc
Confidence 1 22 346777765 67778887777777653
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=7.2e-09 Score=93.81 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=123.1
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCc
Q 010748 316 AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 395 (502)
Q Consensus 316 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~ 395 (502)
+|+-.-.-+-++.+.+..|.+-++.++-... +...+.|.++.|...++ ++..|+.+|.|..+|+|...... ..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--f~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~----~~ 290 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--FQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN----GW 290 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--cccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC----Cc
Confidence 5553322233666778888899998875443 44778899999988654 89999999999999999863211 23
Q ss_pred cceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEE--EEEcCCCCcEEEEEeCCC
Q 010748 396 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFS--VAFSEDSPFVLAIGGSKG 472 (502)
Q Consensus 396 ~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~--~~~spd~~~ll~sg~~dg 472 (502)
+... .-|...|+++..-.....+|++.+.+|.|++||++.-+. ..+.+..+|...-.- +...+... .++++|.|.
T Consensus 291 ~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDc 368 (425)
T KOG2695|consen 291 CAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDC 368 (425)
T ss_pred ceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCee
Confidence 3333 348999999987764448899999999999999987662 237777777543322 23345555 477799999
Q ss_pred cEEEEECCCCccccccccCCCCC
Q 010748 473 KLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
..+||.+.++..+.+.-.....+
T Consensus 369 ytRiWsl~~ghLl~tipf~~s~~ 391 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPYSAS 391 (425)
T ss_pred EEEEEecccCceeeccCCCCccc
Confidence 99999999999988766555544
No 287
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4e-08 Score=90.83 Aligned_cols=221 Identities=15% Similarity=0.173 Sum_probs=139.9
Q ss_pred cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
.+.+|...|..|+|+|....++..++.+.+|+|.|+++..++.++..+ ..+++++|.-+..+++++|-.+|.|.+||+|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 344788999999999986668999999999999999999999999877 8899999999998999999999999999999
Q ss_pred CCCCccceEe---ecCCeeEEEeCCCC-----CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE
Q 010748 341 ISTHSGFKWA---VAADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 341 ~~~~~~~~~~---~~~~v~~v~~~~~~-----~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 412 (502)
.+........ ...+|..++.-+-+ +.+++.... .+..|.+...... ..++. -....+.+.++.+
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~-----~p~vl-ele~pG~cismqy 338 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAEC-----LPCVL-ELEPPGICISMQY 338 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccC-----CCccc-ccCCCcceeeeee
Confidence 8765432221 23344444432211 112333222 2455655443210 11111 2223566677777
Q ss_pred cCCCCCEEEEEeCCCc------EEE-EECCCCCeeEEEEecCC-CC---cE---EEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 413 NPLVPNLLATGSTDKM------VKL-WDLSNNQPSCIASRNPK-AG---AV---FSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~------i~v-wd~~~~~~~~~~~~~~~-~~---~v---~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
.+....+|+|.-.+.+ |-+ -|...+.+.+.... .+ .+ ++ ..+.-.++..+++.+|+..+.+.+||
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc-cccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 7765566666554321 111 12233433332221 11 11 11 12222456677788888889999999
Q ss_pred CCCCccccccccC
Q 010748 479 TLSDAGISNRFSK 491 (502)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (502)
..+.+.+++.-..
T Consensus 418 ~~s~evvQ~l~~~ 430 (463)
T KOG1645|consen 418 PHSFEVVQTLALS 430 (463)
T ss_pred cchhheeeecccC
Confidence 9999988775443
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=3.4e-08 Score=91.43 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=110.3
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe---cC
Q 010748 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG---SM 217 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g---~~ 217 (502)
....+..+|.+++||++.... ..-+..|..... .........++.-|..+.++ .+...+.++ +.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K---~~~~f~~~~~~~---~~kl~~~~~v~~~~~ai~~~-------~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSK---QRAVFDYRENPK---GAKLLDVSCVPKRPTAISFI-------REDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCC---ceEEEEEecCCC---cceeeeEeecccCcceeeee-------eccceEEEEeecCC
Confidence 345567889999999998776 233555554442 12222223334444444443 223333333 33
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
...+.+|....+. .....||-..++.++|+|+ ..+++++..|..|+|-...
T Consensus 131 ~~~~di~s~~~~~----------------------------~~~~lGhvSml~dVavS~D-~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 131 VYSFDILSADSGR----------------------------CEPILGHVSMLLDVAVSPD-DQFIITADRDEKIRVSRYP 181 (390)
T ss_pred ceeeeeecccccC----------------------------cchhhhhhhhhheeeecCC-CCEEEEecCCceEEEEecC
Confidence 3455555554211 1123379999999999999 5699999999999998887
Q ss_pred CCeeeEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748 298 AGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS 345 (502)
Q Consensus 298 ~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 345 (502)
..-.+.+| -||+..|..++.-++. .|++||.|++|++||+++++..
T Consensus 182 a~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 ATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCcc
Confidence 76666666 5799999999998865 6999999999999999998865
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=3.2e-06 Score=80.11 Aligned_cols=197 Identities=14% Similarity=0.163 Sum_probs=135.1
Q ss_pred cccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeee----eeccccCCCcceeeeecCCCCCC-CCCCEEEEecCCCc
Q 010748 146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV----HHHIIIPAFPLCMAWLDCPLKDR-EKGNFMAVGSMEPA 220 (502)
Q Consensus 146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~s-~~~~~la~g~~dg~ 220 (502)
..+.+|+.|+..... .||.|+........|-. ......+.+..-+.++. -|+ .+|+++|..+. |.
T Consensus 273 ~~nsDGkrIvFq~~G------dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle---dfa~~~Gd~ia~VSR-Gk 342 (668)
T COG4946 273 NANSDGKRIVFQNAG------DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE---DFAVVNGDYIALVSR-GK 342 (668)
T ss_pred ccCCCCcEEEEecCC------cEEEeCCCcCcceeeecCCccccccccccccCHHHhhh---hhccCCCcEEEEEec-Cc
Confidence 345678888766433 89999887762222211 11222223322233322 122 36999998876 77
Q ss_pred EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCC-cEEEEeCCCC
Q 010748 221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-QVKIWDVAAG 299 (502)
Q Consensus 221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg-~v~vwd~~~~ 299 (502)
..|.+...+-.+ ..+|...|.-..+..+ ..-++.|..|| .|-|+|..++
T Consensus 343 aFi~~~~~~~~i-----------------------------qv~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 343 AFIMRPWDGYSI-----------------------------QVGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred EEEECCCCCeeE-----------------------------EcCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCc
Confidence 777665322111 1257777888888877 44888999999 8999999887
Q ss_pred eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCC----
Q 010748 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG---- 375 (502)
Q Consensus 300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg---- 375 (502)
+.. .+...-+.|.++..+++| .+++++.....|.+.|+.++.....-....+-|+.+.|+|++. .++-+--+|
T Consensus 393 e~k-r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq 469 (668)
T COG4946 393 EVK-RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQ 469 (668)
T ss_pred eEE-EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeee
Confidence 654 455567889999999999 8899999889999999999887665556667799999999865 676665555
Q ss_pred cEEEEECCCC
Q 010748 376 TIKGFDIRTA 385 (502)
Q Consensus 376 ~v~i~d~~~~ 385 (502)
.|++||+...
T Consensus 470 ~Iklydm~~~ 479 (668)
T COG4946 470 SIKLYDMDGG 479 (668)
T ss_pred eEEEEecCCC
Confidence 5788887764
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.7e-08 Score=92.23 Aligned_cols=250 Identities=13% Similarity=0.130 Sum_probs=166.7
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
..+++.+++.||.++.|.-... ........+..|-..|.+++.+-+ +.+++|++.
T Consensus 19 ka~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d 73 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVED 73 (558)
T ss_pred hhheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHHHHHHhhhcccc-ceeEeeccC
Confidence 4789999999999999964311 113344456689999999999988 558888777
Q ss_pred -CCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCcc--ceEeecCCeeEEEe
Q 010748 288 -DKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW 360 (502)
Q Consensus 288 -dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~v~~ 360 (502)
|..++++|+.+-..+.-++. -.+.+. +..++... .+.++.-.++.+.++|-+...+.. ...-|..+|.++.+
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 99999999987655433321 122221 22223221 233334457899999988765433 23357889999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCCC------CCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748 361 DPHAEHSFVVSLEDGTIKGFDIRTAKS------DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 361 ~~~~~~~~~~~~~dg~v~i~d~~~~~~------~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
++.+. .+++....|.|..|.....-. .........++.+.-.....+++.|+|.+ ..+.+-+.|..|+++.+
T Consensus 153 ~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 153 NQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVF 230 (558)
T ss_pred ecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEe
Confidence 99765 688888899999999874111 11111122233334455678999999998 88999999999999999
Q ss_pred CCCCeeEEE---------------Ee---------------cCC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 435 SNNQPSCIA---------------SR---------------NPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 435 ~~~~~~~~~---------------~~---------------~~~-~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
++++..... .+ ..| ...-+.+.|...+.|+|. |+-= .|+|.++.++.
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly-~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY-GTIL-GIKVINLDTNT 308 (558)
T ss_pred ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe-ecce-eEEEEEeecCe
Confidence 887531100 00 011 123457789999997554 4444 49999999988
Q ss_pred cccc
Q 010748 484 GISN 487 (502)
Q Consensus 484 ~~~~ 487 (502)
.++.
T Consensus 309 v~ri 312 (558)
T KOG0882|consen 309 VVRI 312 (558)
T ss_pred EEEE
Confidence 7653
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=8.7e-09 Score=93.28 Aligned_cols=177 Identities=18% Similarity=0.262 Sum_probs=126.4
Q ss_pred EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC----CCccce
Q 010748 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS----THSGFK 348 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~ 348 (502)
+|+-+-.-+-++.+.+..|-+-++.+|-. ..|. .++.|.++.|+..+ ++++.|..+|.|..+|+|.. .-....
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 66543222335666777899999988743 3444 57789999999888 89999999999999999976 334456
Q ss_pred EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEE--EcCCCCCEEEEEeCC
Q 010748 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--YNPLVPNLLATGSTD 426 (502)
Q Consensus 349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~sp~~~~~l~t~s~d 426 (502)
.-|.+.|+++..-.....++++++.+|.|.+||+|..+. ...+.+..+|...-.-+- ..+.. ..+++++.|
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD 367 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD 367 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccccc-ceEEEccCe
Confidence 678899999987764556899999999999999998632 234777888865433332 33433 788899999
Q ss_pred CcEEEEECCCCCeeEEEEecCC--CCcEEEEEEcC
Q 010748 427 KMVKLWDLSNNQPSCIASRNPK--AGAVFSVAFSE 459 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~sp 459 (502)
...|||.+..++..+...+... ...+.+++|..
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 9999999999985443333322 12345566643
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.86 E-value=4.9e-06 Score=82.34 Aligned_cols=229 Identities=15% Similarity=0.125 Sum_probs=137.3
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceee-EEeccCCCcEEEEEe
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs 286 (502)
++..+++++.+|.+..+|..+++.+..... ...+.+ .... ...++.++
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------------------~~~~~~~p~v~---~~~v~v~~ 152 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----------------------------SSEVLSPPLVA---NGLVVVRT 152 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc----------------------------CceeecCCEEE---CCEEEEEC
Confidence 477888899999999999987654432110 011111 1111 23677778
Q ss_pred cCCcEEEEeCCCCeeeEeeccCCCCeE-----EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-eecC---Ce--
Q 010748 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQ-----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA---DV-- 355 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~h~~~v~-----~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~---~v-- 355 (502)
.+|.|..||..+|+.+..+......+. +.... + ..++.+..++.+..+|.++++..-... .... .+
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 899999999999998877654322111 11111 2 357788888999999998876432110 0000 00
Q ss_pred -eEEEeCCC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 356 -ESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 356 -~~v~~~~~-~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
..+.-+|. ....+++++.+|.++.||..++ ..++..... ........ + ..++.++.+|.|..+|
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG---------~~~W~~~~~--~~~~p~~~--~-~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG---------RVLWKRDAS--SYQGPAVD--D-NRLYVTDADGVVVALD 295 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCC---------cEEEeeccC--CccCceEe--C-CEEEEECCCCeEEEEE
Confidence 00000110 1236888888999999999887 445544311 12222222 3 6788888999999999
Q ss_pred CCCCCeeEEEEecCC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 434 LSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~-~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
..+++. +...... .....+... .+. .|++++.+|.|+++|..+++.+.+.-
T Consensus 296 ~~tG~~--~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 296 RRSGSE--LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCCcE--EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 998873 3333111 111222222 234 47778999999999999998876544
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=7.7e-08 Score=89.10 Aligned_cols=160 Identities=15% Similarity=0.212 Sum_probs=109.2
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc---eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCC
Q 010748 314 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 390 (502)
Q Consensus 314 ~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~ 390 (502)
.+..++.+ ++++++..+....+++.+....... ........+++.+..... .+.++..-|-++-+|+-+..
T Consensus 67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~---- 140 (390)
T KOG3914|consen 67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD---- 140 (390)
T ss_pred ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeeccc----
Confidence 34455555 7777777777777777665443111 112333445555555433 34444444555555544321
Q ss_pred CCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748 391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~ll~sg~ 469 (502)
..+...+.+|-+.++.++|+|+. ++|+|+..|..|++-.+.... .+.. ..+|...|..++.-++. +|++||
T Consensus 141 ---~~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f--~IesfclGH~eFVS~isl~~~~--~LlS~s 212 (390)
T KOG3914|consen 141 ---SGRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF--VIESFCLGHKEFVSTISLTDNY--LLLSGS 212 (390)
T ss_pred ---ccCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc--chhhhccccHhheeeeeeccCc--eeeecC
Confidence 13445567899999999999998 999999999999998776544 2323 24699999999998886 488999
Q ss_pred CCCcEEEEECCCCccccc
Q 010748 470 SKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 470 ~dg~i~vwd~~~~~~~~~ 487 (502)
.|++|++||+.+++++..
T Consensus 213 GD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDT 230 (390)
T ss_pred CCCcEEEEecccCCcccc
Confidence 999999999999999854
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.8e-08 Score=93.06 Aligned_cols=212 Identities=17% Similarity=0.133 Sum_probs=154.4
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCC--C-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEec
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDA 339 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~--~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~i~iwd~ 339 (502)
-|.+.|+.+.-... .++++++.||.++.|--.. + ..+..+..|-..|.+++.+.++ .++.|++. |..++++|+
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEe
Confidence 48888888876654 6999999999999997543 1 3455567788999999999998 88888777 999999999
Q ss_pred CCCCCccceEeecCCeeEEEe--CCCCC--CEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748 340 RISTHSGFKWAVAADVESLAW--DPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~v~~--~~~~~--~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
..-..... .....-...+.| ++... .+.+....+|.+.++|-+...+ +......-|..+|.++.+++.
T Consensus 84 En~Dminm-iKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 84 ENFDMINM-IKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred eccchhhh-cccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEEEEeecc
Confidence 87665431 111111222333 22111 2333446789999999887632 455666779999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CC-e-----------eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 416 VPNLLATGSTDKMVKLWDLSN-NQ-P-----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~-~~-~-----------~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
+ ..+++....|.|.-|.... .+ | .-++.+....+...++.|+|++.. +++-+.|..|+++.+.++
T Consensus 156 ~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 156 G-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred c-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccc
Confidence 8 8888888899999998873 10 0 112223334566789999999995 888889999999999999
Q ss_pred cccccc
Q 010748 483 AGISNR 488 (502)
Q Consensus 483 ~~~~~~ 488 (502)
+.++.+
T Consensus 234 klvqei 239 (558)
T KOG0882|consen 234 KLVQEI 239 (558)
T ss_pred hhhhhh
Confidence 987654
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=1.2e-05 Score=74.41 Aligned_cols=220 Identities=14% Similarity=0.100 Sum_probs=139.0
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec-cCCCcEEEEEe
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~sgs 286 (502)
++.++++-...+.|..|+..+..... . .......+++. ++ + .|+.+.
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------------~----~~~~~~G~~~~~~~-g-~l~v~~ 58 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV--------------------------I----DLPGPNGMAFDRPD-G-RLYVAD 58 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE--------------------------E----ESSSEEEEEEECTT-S-EEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE--------------------------E----ecCCCceEEEEccC-C-EEEEEE
Confidence 68888888888999999987532110 0 11126777777 55 4 555555
Q ss_pred cCCcEEEEeCCCCeeeEeecc-----CCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEecCCCCCccceEeecC
Q 010748 287 ADKQVKIWDVAAGKCNLTLEH-----HTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~ 353 (502)
.. .+.++|+.+++....+.. .....+.+++.|+| ++.++.... |.|..++.. .+ .......-.
T Consensus 59 ~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~ 134 (246)
T PF08450_consen 59 SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLG 134 (246)
T ss_dssp TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEES
T ss_pred cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcc
Confidence 54 456669998865443332 34567899999999 666666544 446666666 23 333444456
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
..+.++|+|++..++++-+..+.|..|++......... ......+....+..-.+++..+| ++.++....+.|.+++
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN--RRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFD 211 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE--EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEE
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceee--eeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEEC
Confidence 67899999998766667788899999999754110000 01111222222347889999988 7888777889999999
Q ss_pred CCCCCeeEEEEecCCCCcEEEEEE-cCCCCcEEEEEe
Q 010748 434 LSNNQPSCIASRNPKAGAVFSVAF-SEDSPFVLAIGG 469 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~ll~sg~ 469 (502)
.. ++........ ...+++++| -++...|++|..
T Consensus 212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEEB
T ss_pred CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEeC
Confidence 88 6644444444 447999999 467665666643
No 296
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.81 E-value=1.2e-07 Score=96.33 Aligned_cols=186 Identities=15% Similarity=0.211 Sum_probs=135.7
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
++..++.|+....|..+|+.+...... ..-....|.-++.+ ..+|.+|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---------------------------~~v~a~~v~imR~N---nr~lf~G~t 195 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---------------------------TNVSASGVTIMRYN---NRNLFCGDT 195 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---------------------------eeccCCceEEEEec---CcEEEeecc
Confidence 466677777777777788865322111 11122236656554 348999999
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCccceEeecCCeeEE
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~v 358 (502)
.|+|.+-|.++.+.++++..|++.|..+..+ | ++|++++. |..|+|||+|.-+..... .......-+
T Consensus 196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~P~fl 271 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYGPQFL 271 (1118)
T ss_pred cceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccCchhh
Confidence 9999999999999999999999999876654 5 78888876 456899999987655422 233334667
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.|+|.-...+++.+..|...+-|..+.... ...++.+......+..+.+++++ ..|+.|..+|.|.+|-
T Consensus 272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhcccccceEEEEecccceeeccccccCCC-----ccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 888877778999999999999995544210 12344444455669999999998 9999999999999997
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.81 E-value=5.5e-06 Score=81.95 Aligned_cols=262 Identities=12% Similarity=0.116 Sum_probs=145.5
Q ss_pred CCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCC
Q 010748 150 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 229 (502)
Q Consensus 150 ~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~ 229 (502)
++..+++++.++ .+|.++...+ .+.-.+. ++....+. +. -.+..+++++.+|.|..||..++
T Consensus 104 ~~~~v~v~~~~g-----~l~ald~~tG---~~~W~~~--~~~~~~~~------p~--v~~~~v~v~~~~g~l~a~d~~tG 165 (377)
T TIGR03300 104 DGGLVFVGTEKG-----EVIALDAEDG---KELWRAK--LSSEVLSP------PL--VANGLVVVRTNDGRLTALDAATG 165 (377)
T ss_pred cCCEEEEEcCCC-----EEEEEECCCC---cEeeeec--cCceeecC------CE--EECCEEEEECCCCeEEEEEcCCC
Confidence 456676776666 7787776554 2221111 11111110 00 13557777888999999999876
Q ss_pred CCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCC
Q 010748 230 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT 309 (502)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~ 309 (502)
+.+..... ............+ ... + + .++.++.++.+..+|+.+|+.+.......
T Consensus 166 ~~~W~~~~------------------~~~~~~~~~~~sp----~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 166 ERLWTYSR------------------VTPALTLRGSASP----VIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred ceeeEEcc------------------CCCceeecCCCCC----EEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 54332110 0000000011111 111 2 2 67788888999999999998765543110
Q ss_pred C----C---eEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCccceEeecC-CeeEEEeCCCCCCEEEEEeCCCcEEE
Q 010748 310 D----K---VQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-DVESLAWDPHAEHSFVVSLEDGTIKG 379 (502)
Q Consensus 310 ~----~---v~~l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~dg~v~i 379 (502)
. . ...+.-+| .+ ..+++++.+|.+..||..+++.. |.... ....... .+ ..+++++.+|.|+.
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~~~---W~~~~~~~~~p~~--~~-~~vyv~~~~G~l~~ 293 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGRVL---WKRDASSYQGPAV--DD-NRLYVTDADGVVVA 293 (377)
T ss_pred CCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCcEE---EeeccCCccCceE--eC-CEEEEECCCCeEEE
Confidence 0 0 00000011 13 46788888999999999877533 22221 1111222 22 36888889999999
Q ss_pred EECCCCCCCCCCCCCccceEEec-cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEc
Q 010748 380 FDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 380 ~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
+|..++ ..++.... ......+.... + ..|++++.+|.|+++|..+++. +.....+...+..--..
T Consensus 294 ~d~~tG---------~~~W~~~~~~~~~~ssp~i~--g-~~l~~~~~~G~l~~~d~~tG~~--~~~~~~~~~~~~~sp~~ 359 (377)
T TIGR03300 294 LDRRSG---------SELWKNDELKYRQLTAPAVV--G-GYLVVGDFEGYLHWLSREDGSF--VARLKTDGSGIASPPVV 359 (377)
T ss_pred EECCCC---------cEEEccccccCCccccCEEE--C-CEEEEEeCCCEEEEEECCCCCE--EEEEEcCCCccccCCEE
Confidence 999887 44444422 11222222232 3 6888999999999999999884 44444444333322222
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q 010748 459 EDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 459 pd~~~ll~sg~~dg~i~vw 477 (502)
.++. |+.++.||.|+.|
T Consensus 360 ~~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 360 VGDG--LLVQTRDGDLYAF 376 (377)
T ss_pred ECCE--EEEEeCCceEEEe
Confidence 3343 6668899988765
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.80 E-value=2.7e-08 Score=86.78 Aligned_cols=199 Identities=18% Similarity=0.212 Sum_probs=123.7
Q ss_pred eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeE------------eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 010748 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 336 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~i 336 (502)
|+.+.+.-+ ..|+++..++.+......++.+.. .+..|+++-.+-..+-.+ +-++++..||.+.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEEE
Confidence 666666654 478888888777776655444332 222333322222222233 56899999999999
Q ss_pred EecCCCCCccceEe-ecCCeeEEEeCCCCCCEEEEE-----eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE
Q 010748 337 KDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVS-----LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI 410 (502)
Q Consensus 337 wd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~-----~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 410 (502)
++.+.-........ ......+.+....+. ++.++ ..-+..+.|+++... ........- ..|+++
T Consensus 116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~--------t~~~~~~~~-~~v~~l 185 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIK--------TLIPSKKAL-DAVTAL 185 (319)
T ss_pred EechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccc--------ccccccccc-ccchhh
Confidence 99876221111110 011111122222222 22222 122345566665441 112222222 339999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
+-+|...+++++|+.||.+.+||++... .....+..|..+|+.+-|+|..+--|.++++||.+-.||..+
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999887899999999999999999874 345566789999999999998766789999999999999875
No 299
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.80 E-value=4.2e-09 Score=102.66 Aligned_cols=245 Identities=22% Similarity=0.291 Sum_probs=155.2
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE
Q 010748 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
-|++|.. ..+...+++|..+|.|.+-.+..... .......+|...+++++
T Consensus 60 kcva~~y-----~~d~cIlavG~atG~I~l~s~r~~hd-------------------------Ss~E~tp~~ar~Ct~lA 109 (783)
T KOG1008|consen 60 KCVASFY-----GNDRCILAVGSATGNISLLSVRHPHD-------------------------SSAEVTPGYARPCTSLA 109 (783)
T ss_pred eeehhhc-----CCchhhhhhccccCceEEeecCCccc-------------------------ccceecccccccccccc
Confidence 4777641 23456899999999999987743111 11122336889999999
Q ss_pred eccCCCcEEEEEe----cCCcEEEEeCCCC--eee--Eeecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748 274 WNKEFRNILASAS----ADKQVKIWDVAAG--KCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 274 ~~~~~~~~l~sgs----~dg~v~vwd~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 344 (502)
|++-..++||.|- .|..+.|||+.++ .+. ..|.+ .-....+++|-.+. .++++|...+.+.++|+|....
T Consensus 110 wneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 110 WNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred cccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh
Confidence 9998778888873 3567999999876 222 22222 33456688999666 8899999999999999995432
Q ss_pred ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE-CCCCCCCCCCCCCccceEEeccC----CCeeEEEEcCCCCCE
Q 010748 345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNL 419 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d-~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~~~~~ 419 (502)
.. ..-...-+..+...|...+++++. .+|.|.+|| .++. ..++..+...+ ..+..++|+|..+.+
T Consensus 189 ~~-~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 189 SV-SSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hh-hhhhhhhcccceecCCCCCceecc-ccCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 22 111223455667777656555554 499999999 5544 23333333222 348999999988788
Q ss_pred EEEEeCC-CcEEEEECCCC--------CeeEEEE----ecC--CCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEEC
Q 010748 420 LATGSTD-KMVKLWDLSNN--------QPSCIAS----RNP--KAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 420 l~t~s~d-g~i~vwd~~~~--------~~~~~~~----~~~--~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~ 479 (502)
+++.+.| ++|+++++... ....... +.. ....|.+..|++..+ ....++-.+-.+.-+++
T Consensus 259 la~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred hhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 8888875 67999998642 1111111 121 235688888887652 12333444444444444
No 300
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=4.9e-06 Score=82.66 Aligned_cols=192 Identities=9% Similarity=0.025 Sum_probs=112.9
Q ss_pred CCCCCCCE-EEEecCC---CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCC
Q 010748 204 KDREKGNF-MAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 204 ~~s~~~~~-la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
.|+|+|+. ++..+.. ..|.++|+.++.... +....+.+....|+|++.
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----------------------------lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----------------------------IASSQGMLVVSDVSKDGS 245 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----------------------------EecCCCcEEeeEECCCCC
Confidence 34899984 6654433 568888886532110 111234455678999977
Q ss_pred cEEEEEecC--CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCccceEeecCCe
Q 010748 280 NILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADV 355 (502)
Q Consensus 280 ~~l~sgs~d--g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v 355 (502)
.++++.+.+ ..|.++++.+++. ..+..+........|+|+|..++++....+ .|.++|+.++........ +.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-
Confidence 666666555 4577788877764 344434433445689999965666655545 567777776654332222 11
Q ss_pred eEEEeCCCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748 356 ESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 356 ~~v~~~~~~~~~~~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
....|+|++..+++++... ..|.+.|+.++. ...+... .......|+|+|..++++....+
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------eEECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence 1248999998766666543 367888887652 2223222 23346889999844444433333
Q ss_pred c--EEEEECCCCC
Q 010748 428 M--VKLWDLSNNQ 438 (502)
Q Consensus 428 ~--i~vwd~~~~~ 438 (502)
. +.+.++....
T Consensus 391 ~~~L~~~~l~g~~ 403 (419)
T PRK04043 391 QSALGIIRLNYNK 403 (419)
T ss_pred cEEEEEEecCCCe
Confidence 3 5666776543
No 301
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.76 E-value=2.1e-05 Score=75.19 Aligned_cols=241 Identities=11% Similarity=0.086 Sum_probs=130.2
Q ss_pred cccCCCceEEEEEe---------cCCcceeEEEEEecCCCCCCCeeeeeccccCCCccee-eeecCCCCCCCCCCEEEEe
Q 010748 146 TINPNDAVIVCARN---------EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCM-AWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 146 ~~~p~~~~l~~~~~---------~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~la~g 215 (502)
.++|+++.|.++.. +.+ .|-+|+... +..-+++.++.-|-.. --.+..++++|+|++|++.
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d----~V~v~D~~t-----~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTD----YVEVIDPQT-----HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCC----EEEEEECcc-----CcEEeEEccCCCchhhccCccceEEECCCCCEEEEe
Confidence 39999999988887 433 444444443 2334444444332200 0011123348999999988
Q ss_pred cC--CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748 216 SM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 216 ~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v 293 (502)
.. +..|.|.|+.+...+....+ .+...-...++. .++ +-+.||....
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~v----------------------------p~~~~vy~t~e~-~~~--~~~~Dg~~~~ 171 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDV----------------------------PDCYHIFPTAND-TFF--MHCRDGSLAK 171 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeC----------------------------CCCcEEEEecCC-ccE--EEeecCceEE
Confidence 74 58999999986443332211 011111111111 111 2233444433
Q ss_pred EeCCC-Cee-eEe---eccCCCCeEEE-EEcC-CCCcEEEEEeCCCcEEEEecCCCCCcc-ceEe-----------ecCC
Q 010748 294 WDVAA-GKC-NLT---LEHHTDKVQAV-AWNH-HSPQILLSGSFDRSVVMKDARISTHSG-FKWA-----------VAAD 354 (502)
Q Consensus 294 wd~~~-~~~-~~~---~~~h~~~v~~l-~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~-----------~~~~ 354 (502)
..+.+ |+. ..+ +..-..++..- .|.+ ++ ..+.+... |+|.+.|+....... ..+. ..+.
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 32221 211 111 11100111000 3455 55 66665555 999999975543211 1111 1233
Q ss_pred eeEEEeCCCCCCEEEEEe---------CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe-
Q 010748 355 VESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS- 424 (502)
Q Consensus 355 v~~v~~~~~~~~~~~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s- 424 (502)
+.-++++|+++.+++... ..+.|.++|..+. +.+..+.. ...+..++++|++..+|++..
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeEEEEeCC
Confidence 455999998875555332 2247999999886 55666553 457899999999842665544
Q ss_pred CCCcEEEEECCCCC
Q 010748 425 TDKMVKLWDLSNNQ 438 (502)
Q Consensus 425 ~dg~i~vwd~~~~~ 438 (502)
.++.|.++|..+.+
T Consensus 320 ~s~~VsViD~~t~k 333 (352)
T TIGR02658 320 GDKTLYIFDAETGK 333 (352)
T ss_pred CCCcEEEEECcCCe
Confidence 68889999999887
No 302
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.71 E-value=1.3e-06 Score=83.49 Aligned_cols=240 Identities=16% Similarity=0.201 Sum_probs=145.1
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
.+||.|.+|++.... -|.+|.-.....+.. ..| ..|..+.|+|. +.+|.
T Consensus 39 ~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~----------------------------~~~-~~V~~~~fSP~-~kYL~ 87 (561)
T COG5354 39 SESPLGTYLFSEHAA-GVECWGGPSKAKLVR----------------------------FRH-PDVKYLDFSPN-EKYLV 87 (561)
T ss_pred eecCcchheehhhcc-ceEEccccchhheee----------------------------eec-CCceecccCcc-cceee
Confidence 348999999998764 577998764331111 123 45889999999 67888
Q ss_pred EEecCC---------------cEEEEeCCCCeeeEeeccCCCC-------------------------------------
Q 010748 284 SASADK---------------QVKIWDVAAGKCNLTLEHHTDK------------------------------------- 311 (502)
Q Consensus 284 sgs~dg---------------~v~vwd~~~~~~~~~~~~h~~~------------------------------------- 311 (502)
+-+.-. .+.+||+.++..+..+..-..+
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p 167 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHP 167 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCc
Confidence 865533 4999999988777665432222
Q ss_pred --------eEEEEEcCCCC-cEEEE-----EeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEe-----
Q 010748 312 --------VQAVAWNHHSP-QILLS-----GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL----- 372 (502)
Q Consensus 312 --------v~~l~~~~~~~-~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----- 372 (502)
|+...|+|.+. ..|+. .+..+++++|.+...+......-....-..+.|++.|..+++-.-
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 33334444321 11111 223445555555533333222222333345678887764433221
Q ss_pred -----CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEECCCCCeeEEEEec
Q 010748 373 -----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 373 -----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
....+++++++.. .+.......++|..++|.|.+.++.++ |-.+..+.++|++.+- .+.+
T Consensus 248 nKsyfgesnLyl~~~~e~----------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl---~~~~- 313 (561)
T COG5354 248 NKSYFGESNLYLLRITER----------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL---RFYF- 313 (561)
T ss_pred ccceeccceEEEEeeccc----------ccceeccccccceeeeecccCCceeEEecccccceeecccccce---EEec-
Confidence 1245778887743 222222567899999999988554433 3568889999998762 2222
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCccccccc
Q 010748 447 PKAGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~ll~sg~--~dg~i~vwd~~~~~~~~~~~ 489 (502)
..+.=..+.|+|.++|+|.+|- ..|.|-+|+......+...|
T Consensus 314 -Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~ 357 (561)
T COG5354 314 -PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF 357 (561)
T ss_pred -CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe
Confidence 2355567889999998666332 33789999998877665443
No 303
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=2.6e-07 Score=91.34 Aligned_cols=198 Identities=18% Similarity=0.269 Sum_probs=139.0
Q ss_pred ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe---------------eeEeeccCCCCeEEEEEcCCCCcEEEEEeC
Q 010748 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSF 330 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~ 330 (502)
.....|++|+.. ..++|+|+.||.++|..+.+.. .-+++.+|+..|.-+.|+... +.|.++..
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDT 91 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCC
Confidence 356889999998 6699999999999999876431 124567999999999999988 88999999
Q ss_pred CCcEEEEecCCCCCccc--eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee
Q 010748 331 DRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408 (502)
Q Consensus 331 dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~ 408 (502)
+|.|.+|-+-.++-... .....+-|.+++|+.+|. .+.+...||.|.+=.+... .++...-......
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGN----------RIwgKeLkg~~l~ 160 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGN----------RIWGKELKGQLLA 160 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccc----------eecchhcchhecc
Confidence 99999999876553221 223456789999999876 6888888888877666543 2222222223345
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCC-----eeEEEEe----cCCCCcEEEEEEc--------CCCCcEEEEEeCC
Q 010748 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQ-----PSCIASR----NPKAGAVFSVAFS--------EDSPFVLAIGGSK 471 (502)
Q Consensus 409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-----~~~~~~~----~~~~~~v~~~~~s--------pd~~~ll~sg~~d 471 (502)
.+.|+++. ..++.+-..|.+.+||....- ..+.... ......|..+.|. |+.+ .|+.+-.+
T Consensus 161 hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~n 238 (1189)
T KOG2041|consen 161 HVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYAN 238 (1189)
T ss_pred ceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcC
Confidence 78899987 677777778999999976531 1121111 1112235555553 5777 68888888
Q ss_pred CcEEEEE
Q 010748 472 GKLEIWD 478 (502)
Q Consensus 472 g~i~vwd 478 (502)
|.+.|-.
T Consensus 239 Gr~QiMR 245 (1189)
T KOG2041|consen 239 GRMQIMR 245 (1189)
T ss_pred ceehhhh
Confidence 8877654
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.66 E-value=8.2e-07 Score=90.37 Aligned_cols=182 Identities=17% Similarity=0.245 Sum_probs=138.8
Q ss_pred CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEE
Q 010748 279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 358 (502)
+..++-|+.-..+..+|+++.+..+...-..+.|+-|+.+. +++.+|...|+|.+-|.++.+.......|.+.+..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn---r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNN---RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecC---cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 44677888888899999999888777765555677776643 789999999999999999999888888899888776
Q ss_pred EeCCCCCCEEEEEeC---------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748 359 AWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
... |. ++++++- |..|++||+|+.+ .+..+.-+.++ .-+.|+|.-...++.++..|+.
T Consensus 224 Dv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr---------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 224 DVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR---------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred ecc--CC-eEEEeecccccccccccchhhhhhhhhhh---------ccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence 664 44 5666543 5568999999873 33333333333 5577888777889999999999
Q ss_pred EEEE---CCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 430 KLWD---LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 430 ~vwd---~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
.+-| +.+.. ..+.........+.++.+++++. .||.|..+|.|.+|-
T Consensus 291 q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCCCc-cceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence 9999 33332 23444555555699999999999 599999999999998
No 305
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=2e-07 Score=89.42 Aligned_cols=232 Identities=16% Similarity=0.271 Sum_probs=144.7
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
.+.+-+++++.|.+|++|.+..... ..+.......+..|+.+|.++.|..+.+ +++ |
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD--------------------~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~--S 801 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGD--------------------EIGTSACQFTYQAHKKPIHDIGFLADLR-SIA--S 801 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccC--------------------ccccceeeeEhhhccCcccceeeeeccc-eee--e
Confidence 3577899999999999999863211 1122345567788999999999998833 454 5
Q ss_pred cCCcEEEEeCCCCeeeEeecc--CCCCeEEEEEcCC-CCcEEEEE-eCCCcEEEEecCCCCCccceEe-----ecCCeeE
Q 010748 287 ADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH-SPQILLSG-SFDRSVVMKDARISTHSGFKWA-----VAADVES 357 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~ 357 (502)
.||.|.+||.-.++++..+.. ..+.+..+..-+. ...++++| +...+|+++|.|...-...... ...-+.+
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 688999999988877664421 1122333333232 22445444 7889999999998765442221 2345788
Q ss_pred EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE-EECCC
Q 010748 358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL-WDLSN 436 (502)
Q Consensus 358 v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v-wd~~~ 436 (502)
++..+.|. .++++-.+|+|.+.|.|++. .+............++ .|.. +.|+....|.++.| |....
T Consensus 882 iaVa~~GN-~lAa~LSnGci~~LDaR~G~---------vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 882 IAVADKGN-KLAAALSNGCIAILDARNGK---------VINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred EEeccCcc-hhhHHhcCCcEEEEecCCCc---------eeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcC
Confidence 99998765 78999999999999999983 3333332222222332 2333 67777778888888 87766
Q ss_pred CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010748 437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd 478 (502)
+. ...+......+..- .-.-|+. |+++.....+.||-
T Consensus 950 gi--mh~q~kpppepahf--lqsvgpS-LV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 950 GI--MHLQDKPPPEPAHF--LQSVGPS-LVTAQNGNILGVYA 986 (1034)
T ss_pred Ce--eeeccCCCCcchhh--hhccCce-eEEeccCcEEEEEe
Confidence 54 22232222221111 1122443 66666666777774
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.4e-06 Score=87.77 Aligned_cols=188 Identities=18% Similarity=0.174 Sum_probs=133.5
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 344 (502)
..+.+.|++++. .+|+-|+.+|.|++++.. +.+ .+...|+.. ...| .++++|+.||+|.|..+-+.+.
T Consensus 38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhhHHHHHHhhc---ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc
Confidence 346788888874 489999999999999965 333 444445544 4456 8999999999999998887765
Q ss_pred ccceEeecCCeeEEEeCCC----CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748 345 SGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~~~----~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 420 (502)
.. ......++.+++++|+ ....+++|+.-| +.++.-+-... .....+....++|.++.|. ++++
T Consensus 106 ~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~W~---g~lI 173 (846)
T KOG2066|consen 106 IT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIKWR---GNLI 173 (846)
T ss_pred ce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEEec---CcEE
Confidence 54 5667788999999997 345799999988 77765443211 1122466678999999998 3888
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEEecC----CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 421 ATGSTDKMVKLWDLSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
|=++.+| |+|||+.+.+......... .......+.|.++.+ |+.| ..-+|+|..++
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEe
Confidence 8888777 9999998876322222111 011234688888876 4444 45579999988
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=1.9e-08 Score=101.39 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=141.2
Q ss_pred cccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC-cEEEE
Q 010748 259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMK 337 (502)
Q Consensus 259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-~i~iw 337 (502)
...+..|....+|++|+.. .+.|+.|+..|.|+++++.+|........|.++|+-+.-+.+|...|.+++... -..+|
T Consensus 1094 w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred chhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 3456678899999999988 679999999999999999999999999999999999999999955555555555 56789
Q ss_pred ecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE-Ee---ccCCCeeEEEEc
Q 010748 338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LH---AHDKAVCTISYN 413 (502)
Q Consensus 338 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~---~h~~~v~~l~~s 413 (502)
++...-..... -..-.++.|+... ..-+.|+......+||+.+.. ++.+ +. +.+..-++..|+
T Consensus 1173 ~~~s~~~~~Hs---f~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~---------~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1173 DASSTGGPRHS---FDEDKAVKFSNSL-QFRALGTEADDALLYDVQTCS---------PLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred ccccccCcccc---ccccceeehhhhH-HHHHhcccccceEEEecccCc---------HHHHhcCcchhhhhhccccccC
Confidence 98763222211 2335677887753 355667666789999999973 3332 21 223334788999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 414 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 414 p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
|.. .+++ .|| .+||++..+ .+..+.... --..-.|+|.|..+++ .-.|||+++.+.++..
T Consensus 1240 P~D-~LIl---ndG--vLWDvR~~~--aIh~FD~ft-~~~~G~FHP~g~eVII------NSEIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1240 PCD-TLIL---NDG--VLWDVRIPE--AIHRFDQFT-DYGGGGFHPSGNEVII------NSEIWDMRTFKLLHSV 1299 (1516)
T ss_pred CCc-ceEe---eCc--eeeeeccHH--HHhhhhhhe-ecccccccCCCceEEe------echhhhhHHHHHHhcC
Confidence 987 6665 355 489998875 333333222 1123469999986444 2358999998876543
No 308
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.61 E-value=1.5e-08 Score=98.96 Aligned_cols=204 Identities=20% Similarity=0.240 Sum_probs=139.9
Q ss_pred cccceeeEEeccCC-CcEEEEEecCCcEEEEeCCCCee--eEeeccCCCCeEEEEEcCCCCcEEEEEe----CCCcEEEE
Q 010748 265 HTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS----FDRSVVMK 337 (502)
Q Consensus 265 h~~~V~~l~~~~~~-~~~l~sgs~dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s----~dg~i~iw 337 (502)
....+.|++++-+. +.+++.|.++|.|.+-.++...- .....+|...+++++|++-..+.|++|- .+..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34567788776543 46899999999999988765432 2334678889999999998767777763 35679999
Q ss_pred ecCCCCC----ccceE-eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEE
Q 010748 338 DARISTH----SGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 338 d~~~~~~----~~~~~-~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 412 (502)
|+.+.-. ...+. .......+++|..+ ..++++|.....++++|+|.. ........+..+..+..
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs----------~~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQS----------LDSVSSVNTKYVQGITV 203 (783)
T ss_pred ecccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhh----------hhhhhhhhhhhccccee
Confidence 9987521 11111 23445678999965 458999999999999999953 22222233456777888
Q ss_pred cCCCCCEEEEEeCCCcEEEEE-CCCCCeeEEEEecC----CCCcEEEEEEcCCCCcEEEEEeCC-CcEEEEECCC
Q 010748 413 NPLVPNLLATGSTDKMVKLWD-LSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTLS 481 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~i~vwd-~~~~~~~~~~~~~~----~~~~v~~~~~spd~~~ll~sg~~d-g~i~vwd~~~ 481 (502)
.|..++++++-. ||.|-+|| .++-+. .+..... ....+..++|+|....++++...+ ++|+++++..
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 886557887766 99999999 333221 1111111 123489999999877777777665 6899999853
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.58 E-value=6.4e-05 Score=69.52 Aligned_cols=198 Identities=12% Similarity=0.136 Sum_probs=126.9
Q ss_pred eEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748 271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW 349 (502)
Q Consensus 271 ~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 349 (502)
++.|.+..+.++++-...+.|..|+..+++... +... . ...+.+. +++ .|+.+... .+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g--~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG--RLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS--EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC--EEEEEEcC-ceEEEecCCCcEEEEee
Confidence 567888546677777788999999998876543 2211 2 6777777 554 45555554 45555888775443333
Q ss_pred e-----ecCCeeEEEeCCCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC
Q 010748 350 A-----VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 350 ~-----~~~~v~~v~~~~~~~~~~~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
. .....+.+++.|+|. ++++.... |.|..++.. + . +..+...-...+.|+|+|++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~---------~-~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G---------K-VTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S---------E-EEEEEEEESSEEEEEEETTS
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C---------e-EEEEecCcccccceEECCcc
Confidence 2 234578899999876 55554433 557777776 3 2 22222334557899999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCC--e---eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 417 PNLLATGSTDKMVKLWDLSNNQ--P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 417 ~~~l~t~s~dg~i~vwd~~~~~--~---~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
..++++-+..+.|..|++.... . .....+....+..-.+++..+|. +.++....+.|.+++.. ++.+..+
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEE
Confidence 4455677788889999986432 1 12223333334588999999998 67777778899999987 6665544
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=2.1e-07 Score=58.52 Aligned_cols=39 Identities=33% Similarity=0.646 Sum_probs=36.8
Q ss_pred CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd 338 (502)
++++.++.+|...|++|+|+|++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 46889999999999999999998 9999999999999997
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.1e-07 Score=83.70 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=116.9
Q ss_pred EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEE
Q 010748 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 370 (502)
|++.+..+.+....+.+|...|..++|+|....++..++.+..|.|.|+++....... .....+++++|+-+..+++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-eccCCceeeeeccCCcceeEE
Confidence 6666666666666677888999999999998558999999999999999987766643 444899999999999999999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEE------EcCCCCCEEEEEeCCCcEEEEECCCC--Cee
Q 010748 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTIS------YNPLVPNLLATGSTDKMVKLWDLSNN--QPS 440 (502)
Q Consensus 371 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~------~sp~~~~~l~t~s~dg~i~vwd~~~~--~~~ 440 (502)
|..+|.|.+||+|... .++..+.+ ...+|..++ ..+.+ .+|+..+.+ +..|.+... .+.
T Consensus 254 Gl~nG~VlvyD~R~~~--------~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE--------GPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred eccCceEEEEEccCCC--------chHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCCC
Confidence 9999999999999873 33333322 123333332 23334 566655544 566766543 223
Q ss_pred EEEEecCCCCcEEEEEEcCCCCcEEEEEeC
Q 010748 441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGS 470 (502)
Q Consensus 441 ~~~~~~~~~~~v~~~~~spd~~~ll~sg~~ 470 (502)
++.... ..+.+.+++.++..+.+|++.-.
T Consensus 323 ~vlele-~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 323 CVLELE-PPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred cccccC-CCcceeeeeecCccceEEEEecC
Confidence 333333 34667788888866667776544
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.54 E-value=2.3e-05 Score=82.73 Aligned_cols=286 Identities=11% Similarity=0.189 Sum_probs=157.6
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
-+.+|.++.|.-+.+-|+.+...| .|...+.... ...+.+. +..-..|++| ||++..++..+.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G-----~iilvd~et~-~~eivg~----vd~GI~aasw-------S~Dee~l~liT~ 129 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALG-----DIILVDPETL-ELEIVGN----VDNGISAASW-------SPDEELLALITG 129 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCC-----cEEEEccccc-ceeeeee----ccCceEEEee-------cCCCcEEEEEeC
Confidence 347899999999999999999888 3333333322 0011111 2333367788 899999999998
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
.+++.+-.-+ .+.+....+ ..-....+....+-|-.. .+. +.|+. |.....+..
T Consensus 130 ~~tll~mT~~-f~~i~E~~L----------------------~~d~~~~sk~v~VGwGrk-eTq-frgs~-gr~~~~~~~ 183 (1265)
T KOG1920|consen 130 RQTLLFMTKD-FEPIAEKPL----------------------DADDERKSKFVNVGWGRK-ETQ-FRGSE-GRQAARQKI 183 (1265)
T ss_pred CcEEEEEecc-ccchhcccc----------------------ccccccccccceeccccc-cee-eecch-hhhcccccc
Confidence 8888665432 111110000 000001112223334332 111 11221 222211111
Q ss_pred CC-eeeEeeccCCCCeEEEEEcCCCCcEEEEEe----CC-CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEE
Q 010748 298 AG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGS----FD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 371 (502)
Q Consensus 298 ~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s----~d-g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 371 (502)
.. +......-+. .=++++|.-+| .++++.. .+ +.|++||.. +..........+--.+++|-|.|. .+++-
T Consensus 184 ~~ek~~~~~~~~~-~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~i 259 (1265)
T KOG1920|consen 184 EKEKALEQIEQDD-HKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAI 259 (1265)
T ss_pred cccccccchhhcc-CCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeee
Confidence 11 1111111222 23468999999 7777732 23 799999987 333332333444557899999766 44443
Q ss_pred ---eCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE---EeCCCcEEEEECCCCCeeEEEEe
Q 010748 372 ---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT---GSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 372 ---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t---~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
+.++.|.+|.-..... +.....+......|..++|+.++ .+|++ ......|++|-+.+....+...+
T Consensus 260 q~~~sd~~IvffErNGL~h------g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 260 QCKTSDSDIVFFERNGLRH------GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred eecCCCCcEEEEecCCccc------cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 4566788887654321 12223333444559999999987 77777 44455599999988776544444
Q ss_pred cCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 446 ~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
....... +.|+|-..+.|.+-..+|...++++
T Consensus 333 ~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 333 QFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 4332222 7788876665665556666666554
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.1e-05 Score=82.03 Aligned_cols=192 Identities=15% Similarity=0.172 Sum_probs=128.5
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc-eeeEEeccCCCcEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS-VLGLAWNKEFRNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s 284 (502)
++++..+|.|+.+|.|.+.+-. ......++.+... |..|. .-++.++|++
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~-~~~~~~~L~s 82 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLY-ILNKQNFLFS 82 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhh-cccCceEEEE
Confidence 6789999999999999887643 1222334455555 44444 4444678888
Q ss_pred EecCCc-----EEEEeCCCC------eee--Eeecc-----CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC--CCCC
Q 010748 285 ASADKQ-----VKIWDVAAG------KCN--LTLEH-----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTH 344 (502)
Q Consensus 285 gs~dg~-----v~vwd~~~~------~~~--~~~~~-----h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~ 344 (502)
.+.|+. |+||+++.- .++ +.+.. ...++.+++.+.+- ..+++|-.+|.|..+.-. ..+.
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccc
Confidence 877754 899998632 344 12222 34678899999886 899999999999998532 2222
Q ss_pred ccce--EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748 345 SGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 345 ~~~~--~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t 422 (502)
.... .....+|+.+.+..++...+++++ -..|.+|.+... ......+..|..++.|..+++..+.++++
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr--------~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR--------TPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC--------CcceeeeccCCccceeeecCCCCccEEEe
Confidence 2222 244678999999887765334433 456899998844 22345577788899999999866334444
Q ss_pred EeCCCcEEEEECCCCC
Q 010748 423 GSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~ 438 (502)
++ ..+.+|+....+
T Consensus 233 ~~--e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 233 GS--EFLYFYDSDGRG 246 (933)
T ss_pred cC--ceEEEEcCCCcc
Confidence 33 459999988665
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=0.00022 Score=70.37 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=83.7
Q ss_pred ceeeEEeccCCCcEEEEE----ecCCc----EEEEeCCCCeee----EeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 010748 268 SVLGLAWNKEFRNILASA----SADKQ----VKIWDVAAGKCN----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV 335 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sg----s~dg~----v~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~ 335 (502)
...++.|+...++.+.+. +.+|. -++|++..++.. .++ .....|.|++++|+. ..|+.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-~kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-DKLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-ceEEEEecCCeEE
Confidence 346777776556666654 33443 346776655422 222 367899999999999 8999999999999
Q ss_pred EEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 336 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~ 385 (502)
+||...+... .....-.++.++|+|+|. ++++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence 9999876433 334456688999999876 8999999999999998754
No 315
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.52 E-value=4.8e-05 Score=69.86 Aligned_cols=183 Identities=17% Similarity=0.155 Sum_probs=114.7
Q ss_pred cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec----C--
Q 010748 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----A-- 353 (502)
Q Consensus 280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~-- 353 (502)
..+++++.++.|..||..+|+.+.++.. ...+...... .+ ..+++++.++.|+.+|..+++..-...... .
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc-cccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 3677778999999999999999888764 2222111122 22 456777788899999988887644311111 0
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe-----------eEEEEcCCCCCEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-----------CTISYNPLVPNLLAT 422 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-----------~~l~~sp~~~~~l~t 422 (502)
......+. + ..++++..++.|..+|++++ ..++......... ..+.+. + ..++.
T Consensus 114 ~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~~ 178 (238)
T PF13360_consen 114 SSSSPAVD--G-DRLYVGTSSGKLVALDPKTG---------KLLWKYPVGEPRGSSPISSFSDINGSPVIS--D-GRVYV 178 (238)
T ss_dssp --SEEEEE--T-TEEEEEETCSEEEEEETTTT---------EEEEEEESSTT-SS--EEEETTEEEEEECC--T-TEEEE
T ss_pred cccCceEe--c-CEEEEEeccCcEEEEecCCC---------cEEEEeecCCCCCCcceeeecccccceEEE--C-CEEEE
Confidence 11222222 3 36888888999999999997 6667666544221 222223 2 36777
Q ss_pred EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748 423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~ 486 (502)
++.++.+..+|+.+++. +.... ...+..+ ....+. .|++++.++.|..||+++++.+-
T Consensus 179 ~~~~g~~~~~d~~tg~~--~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 179 SSGDGRVVAVDLATGEK--LWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECCTSSEEEEETTTTEE--EEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTEEEE
T ss_pred EcCCCeEEEEECCCCCE--EEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCCEEe
Confidence 77777544449999983 33333 2333332 345555 36656689999999999998653
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.4e-05 Score=81.37 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=131.4
Q ss_pred ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCC-eEEEEEcCCCCcEEEEEeCCCc-----EEEEecCC
Q 010748 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRS-----VVMKDARI 341 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~s~dg~-----i~iwd~~~ 341 (502)
.|.| |++. +..++.|+.+|.|.+.+ +.-+.++.|+.+... |+.+. .-++..+|++.+.|+. |++|++..
T Consensus 27 ~isc--~~s~-~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSS-TGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCC-CceEEEeeccccEEEec-ccceeeehheecchhhhhHhh-cccCceEEEEEeecCCCCceEEEEecccc
Confidence 4554 4555 45899999999998887 444555788877777 55444 4444478888877754 89999875
Q ss_pred CCC---ccce-----Ee-----ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee
Q 010748 342 STH---SGFK-----WA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408 (502)
Q Consensus 342 ~~~---~~~~-----~~-----~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~ 408 (502)
... +... .. .+.++.+++.+.+ -..+++|-.+|.|.++.-.-.+. . .....-......+|+
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RD---r--gsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRD---R--GSRQDYSHRGKEPIT 175 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhc---c--ccceeeeccCCCCce
Confidence 321 1111 11 2456788888876 45899999999999884322110 0 122222334467999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
++++..++...+.+++ -..|.+|.+.... .....+..|..+++|..|++.... +++++.. .|.+|+...
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ-FICAGSE-FLYFYDSDG 244 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc-EEEecCc-eEEEEcCCC
Confidence 9999988744333333 4569999998544 345557788889999999987764 4444443 699998764
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=5.5e-06 Score=83.75 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=81.8
Q ss_pred CCCCCEEEEecCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcE
Q 010748 206 REKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 206 s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
+|...++|+++.. |+|.||- ++++.... . ...-.+++|+|+|. .-+
T Consensus 24 HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-------------------------V---t~P~hatSLCWHpe-~~v 73 (1416)
T KOG3617|consen 24 HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-------------------------V---TYPVHATSLCWHPE-EFV 73 (1416)
T ss_pred CCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-------------------------c---ccceehhhhccChH-HHH
Confidence 7888999998754 7888883 44332110 0 11223567999999 778
Q ss_pred EEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 282 l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
|++|-.-|.+.+|...+.+.......|..+|+.+.|+++| ..|+++..-|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 9999999999999988777666667899999999999999 899999999999999765
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=3.1e-05 Score=78.28 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=119.9
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.+++|+-|+-.|.|++++.+..- .....|+.. .-. +.+++|||.
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s~~------~~~-Gey~asCS~ 91 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHSSS------ILE-GEYVASCSD 91 (846)
T ss_pred hcceeeeccccceEEEEecCCcc-----------------------------ccccccccc------ccC-CceEEEecC
Confidence 48899999999999999876310 011123333 334 569999999
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEecCCCC--CccceEeecCCeeEEEeC
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLAWD 361 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~ 361 (502)
||+|.|-.+-+.+...++. ...++.+++++|+ ....+++|+.-| +.++.-+--. .........++|.++.|.
T Consensus 92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR 169 (846)
T ss_pred CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence 9999999998888777775 4678999999997 236799999888 7777644222 222344567899999997
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
. ++++-++..| |++||+.+.+...... .+. ........-..+.|.+. ..|+.| ...+|+|..++.
T Consensus 170 g---~lIAWand~G-v~vyd~~~~~~l~~i~--~p~-~~~R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 170 G---NLIAWANDDG-VKVYDTPTRQRLTNIP--PPS-QSVRPELFPPHLHWQDE--DRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred C---cEEEEecCCC-cEEEeccccceeeccC--CCC-CCCCcccCCCceEecCC--CeEEEe-cCCeEEEEEEec
Confidence 4 3666666555 8999998763221110 000 11111223456778874 345444 445699988873
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.4e-07 Score=95.34 Aligned_cols=199 Identities=17% Similarity=0.231 Sum_probs=133.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+-+.++|++|+..|.|++|++.++.... ....|..+|+-+.=+.+|..+|.++
T Consensus 1110 s~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------------s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1110 SGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------------SVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred ecCCceEEeeeccceEEEEEccCccccc---------------------------cccccccccccccccCCcceeeeec
Confidence 6789999999999999999998765433 3447999999999999977666666
Q ss_pred ecCC-cEEEEeCCC-CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE----eecCCeeEEE
Q 010748 286 SADK-QVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESLA 359 (502)
Q Consensus 286 s~dg-~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v~ 359 (502)
+... -..+|++.. +...++|. .-.++.|+... ..-+.|+.-..+.+||+.+.......+ .....-+++.
T Consensus 1163 s~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred cccCchHHHhccccccCcccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 6655 578999864 44555554 34578888765 555666666789999999987655432 2223347888
Q ss_pred eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 360 ~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
|+|... +++ .|| .+||+|.. ..+..+...+..+ .-.|+|+| .-++.-+ -|||+++.+
T Consensus 1238 FsP~D~-LIl---ndG--vLWDvR~~---------~aIh~FD~ft~~~-~G~FHP~g-~eVIINS-----EIwD~RTF~- 1294 (1516)
T KOG1832|consen 1238 FSPCDT-LIL---NDG--VLWDVRIP---------EAIHRFDQFTDYG-GGGFHPSG-NEVIINS-----EIWDMRTFK- 1294 (1516)
T ss_pred cCCCcc-eEe---eCc--eeeeeccH---------HHHhhhhhheecc-cccccCCC-ceEEeec-----hhhhhHHHH-
Confidence 999765 343 345 47999986 4444443333222 23589998 5565544 489999876
Q ss_pred eEEEEecCCCCcEEEEEEcCCCC
Q 010748 440 SCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 440 ~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
++...+.- .-..+.|+..|.
T Consensus 1295 -lLh~VP~L--dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1295 -LLHSVPSL--DQCAVTFNSTGD 1314 (1516)
T ss_pred -HHhcCccc--cceEEEeccCcc
Confidence 23222211 123466666665
No 320
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.43 E-value=6.8e-07 Score=56.17 Aligned_cols=38 Identities=32% Similarity=0.679 Sum_probs=35.6
Q ss_pred ccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
+++..+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4678899999999999999997 9999999999999997
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1.7e-05 Score=80.36 Aligned_cols=112 Identities=11% Similarity=0.241 Sum_probs=77.1
Q ss_pred ccccccCCCceEEEEEecCC-cceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748 143 EDMTINPNDAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 221 (502)
Q Consensus 143 ~~~~~~p~~~~l~~~~~~~~-~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I 221 (502)
+-..|||...++++++.... .+++.||.-..... .|-..++ ....++| +|..-.||.|-.-|.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq------r~Vt~P~--hatSLCW-------Hpe~~vLa~gwe~g~~ 83 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ------RDVTYPV--HATSLCW-------HPEEFVLAQGWEMGVS 83 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCC------cccccce--ehhhhcc-------ChHHHHHhhcccccee
Confidence 34579999999999976542 23455543222111 1111111 1234667 6778889999999999
Q ss_pred EEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
.+|...+. ........|+.+|..+.|+++ ++.|.++..-|.|.+|...
T Consensus 84 ~v~~~~~~---------------------------e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 84 DVQKTNTT---------------------------ETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEEecCCc---------------------------eeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence 99997642 222233469999999999999 5699999999999999875
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.37 E-value=0.00012 Score=67.64 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=127.5
Q ss_pred eeeEEeccCCCcEEEEEecCCc-EEEEeCCCCeeeEeeccCCCCe--EEEEEcCCCCcEEEEEe-----CCCcEEEEecC
Q 010748 269 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDKV--QAVAWNHHSPQILLSGS-----FDRSVVMKDAR 340 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~-v~vwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~s-----~dg~i~iwd~~ 340 (502)
...++.+|..+..++.+-.-|+ ..+||..+++....+....+.- -.-.|+++| ++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECc
Confidence 3467888866778888877775 6789999998887764332222 135799999 7777653 35899999998
Q ss_pred -CCCCccceEeecCCeeEEEeCCCCCCEEEEEe------------------CCCcEEEEECCCCCCCCCCCCCccceE--
Q 010748 341 -ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL------------------EDGTIKGFDIRTAKSDPDSTSQQSSFT-- 399 (502)
Q Consensus 341 -~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~-- 399 (502)
+...+.....+.-....+.+.|+++. |+++. .+.++.+.|.+++ ..+.+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~t-LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---------~ll~q~~ 155 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGET-LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---------ALLEQVE 155 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCE-EEEEcCCCccCcccCceecChhhcCCceEEEecCCC---------ceeeeee
Confidence 33333333344445667889998864 44432 1122334444443 22222
Q ss_pred E--eccCCCeeEEEEcCCCCCEEEEEeCCCc-------EEEEECCCCCeeEEEEe-----cCCCCcEEEEEEcCCCCcEE
Q 010748 400 L--HAHDKAVCTISYNPLVPNLLATGSTDKM-------VKLWDLSNNQPSCIASR-----NPKAGAVFSVAFSEDSPFVL 465 (502)
Q Consensus 400 ~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~-------i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~spd~~~ll 465 (502)
+ ..|.-+|..+++.++| ..++..-..|- |-+++.... ...... ..-.+.+-+|++++++.++.
T Consensus 156 Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred cCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 3 3367788899998876 44443333221 333333221 111111 12346789999999999766
Q ss_pred EEEeCCCcEEEEECCCCccccc
Q 010748 466 AIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 466 ~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
+|+=.-|.+.+||..++..+..
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred EECCCCCEEEEEECCCCCEeec
Confidence 7777778999999999987754
No 323
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.36 E-value=0.00016 Score=65.78 Aligned_cols=204 Identities=15% Similarity=0.167 Sum_probs=118.5
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~ 342 (502)
+-...+.+|+|+|+.+.++++....+.|..++. +|+.++++.-. .+..-.|++..++ .++++.-.++.+.++++...
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE---
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecc
Confidence 444569999999986778888888889988886 57888877433 3568889998777 66666656899999988443
Q ss_pred CCc--c---ceE------eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE------EeccCC
Q 010748 343 THS--G---FKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT------LHAHDK 405 (502)
Q Consensus 343 ~~~--~---~~~------~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~------~~~h~~ 405 (502)
... . ... .....+..++|+|.+.. |+++-+..-..+|.++...... ...... ......
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGF----DLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS------EEEE-HHHH-HT--SS
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCcc----ceeeccccccccccceec
Confidence 211 1 011 13356899999997664 5555666666677766421000 011111 112345
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-------CCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010748 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~v~~~~~spd~~~ll~sg~~dg~i~vw 477 (502)
.+++++++|..+.+++.......|..+| ..+++.....+... ....-.|+|.++|. +++ .+.-+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI-VSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEE-EETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEE-EcCCceEEEe
Confidence 6899999998767888888888999999 55665555555431 12467899999997 344 5666666654
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=3.8e-05 Score=75.56 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=89.1
Q ss_pred ecCCeeEEEeCCCCCCEEEEE----eCCCc----EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEE
Q 010748 351 VAADVESLAWDPHAEHSFVVS----LEDGT----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 351 ~~~~v~~v~~~~~~~~~~~~~----~~dg~----v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t 422 (502)
......++.|+...++.+.+. +.+|. -.+|++...+. .....+.......|.+++++|+. ..|+.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvsvtsipL~s~v~~ca~sp~E-~kLvl 276 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVSVTSIPLPSQVICCARSPSE-DKLVL 276 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEEEEEEecCCcceEEecCccc-ceEEE
Confidence 344456666766555555543 22333 34566544321 11112223467889999999987 89999
Q ss_pred EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748 423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
|+.||+|.+||...+..... ...-..+.++|+|+|. ++++|+..|.+.+||+.-+..-.+.++....|
T Consensus 277 GC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P 344 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATP 344 (545)
T ss_pred EecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCC
Confidence 99999999999977642211 2234578899999999 68999999999999998777666666554433
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.33 E-value=0.00062 Score=67.73 Aligned_cols=222 Identities=9% Similarity=0.075 Sum_probs=126.0
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
+..+++++.++.|..+|..+++.+.....- .......+...++. . . + .++.++.+
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------------------~~~~~~~~~~sP~v----~-~-~-~v~~~~~~ 214 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLD------------------VPSLTLRGESAPAT----A-F-G-GAIVGGDN 214 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCC------------------CCcccccCCCCCEE----E-C-C-EEEEEcCC
Confidence 556777888899999999877654432110 00000011112221 1 1 2 46667788
Q ss_pred CcEEEEeCCCCeeeEeeccCCC-------CeEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCccceEeec-CCeeEE
Q 010748 289 KQVKIWDVAAGKCNLTLEHHTD-------KVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESL 358 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~-------~v~~l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v 358 (502)
|.+..+|..+|+.+........ ....+..+| .+ ..++.++.+|.+..+|..+++.. |... .....+
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~---W~~~~~~~~~~ 290 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIV---WKREYGSVNDF 290 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEE---EeecCCCccCc
Confidence 9999999999887665431110 001111122 13 46777788999999999887643 2211 111112
Q ss_pred EeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 359 ~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
... + ..+++++.+|.+..+|..++ ..++...... ....+..+. + ..|+.++.+|.|.++|..++
T Consensus 291 ~~~--~-~~vy~~~~~g~l~ald~~tG---------~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 291 AVD--G-GRIYLVDQNDRVYALDTRGG---------VELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred EEE--C-CEEEEEcCCCeEEEEECCCC---------cEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCC
Confidence 221 2 36788888999999999887 3344332111 112222222 2 67888999999999999999
Q ss_pred CeeEEEEecCCCCcEEE-EEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 438 QPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~-~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
+. +.........+.+ ..+ .++ .|..++.+|.|+.+++
T Consensus 356 ~~--~~~~~~~~~~~~s~P~~-~~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 356 RF--VAQQKVDSSGFLSEPVV-ADD--KLLIQARDGTVYAITR 393 (394)
T ss_pred CE--EEEEEcCCCcceeCCEE-ECC--EEEEEeCCceEEEEeC
Confidence 84 3333222222322 222 234 3667899999988764
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=0.00051 Score=60.74 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=69.4
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeE-EeccCCCcEEEEEec
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL-AWNKEFRNILASASA 287 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~l~sgs~ 287 (502)
|++++.|+..|.+++.++.++.....+.+++. |.+- ...++ +.++..|+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~----------------------------vk~~a~~d~~-~glIycgsh 113 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET----------------------------VKVRAQCDFD-GGLIYCGSH 113 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhh----------------------------hccceEEcCC-CceEEEecC
Confidence 88999999999999999998876665544432 1111 22344 449999999
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~ 341 (502)
|++.+..|..+..++...+--.+...+=+..|.. ..|+.+...|.+.--....
T Consensus 114 d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 114 DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred CCcEEEecccccceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccCC
Confidence 9999999999999988876433333333445533 3455556666665544443
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.28 E-value=0.0009 Score=66.56 Aligned_cols=229 Identities=10% Similarity=0.068 Sum_probs=133.2
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.+..+++++.+|.+..+|..+++.+.....-+ .....++ .. + + .++.++.
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-----------------------~~~ssP~----v~-~-~-~v~v~~~ 168 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-----------------------EALSRPV----VS-D-G-LVLVHTS 168 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-----------------------ceecCCE----EE-C-C-EEEEECC
Confidence 36677888889999999998876554321100 0011111 11 2 2 5667888
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEE-EEEcC--CCCcEEEEEeCCCcEEEEecCCCCCccceEeecCC--------ee
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQA-VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD--------VE 356 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~-l~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------v~ 356 (502)
++.|..+|..+|+.+..+......+.. ..-+| .+ ..++.++.+|.+..+|..+++..-. .....+ ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQPTGATEIDRLV 246 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhhe-eccccCCCccchhccc
Confidence 899999999999988877532111000 00011 12 3566778889999999887664321 111000 00
Q ss_pred EEEeCC--CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748 357 SLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 357 ~v~~~~--~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
.+..+| .+. .+++++.+|.+..+|..++ ..++..... ....+... + ..|+.++.+|.+..+|.
T Consensus 247 ~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG---------~~~W~~~~~--~~~~~~~~--~-~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 247 DVDTTPVVVGG-VVYALAYNGNLVALDLRSG---------QIVWKREYG--SVNDFAVD--G-GRIYLVDQNDRVYALDT 311 (394)
T ss_pred ccCCCcEEECC-EEEEEEcCCeEEEEECCCC---------CEEEeecCC--CccCcEEE--C-CEEEEEcCCCeEEEEEC
Confidence 111122 123 5777778999999999987 444443321 11122222 3 67778888999999999
Q ss_pred CCCCeeEEEEecCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 435 SNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 435 ~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
.+++. +....... ....+.... ++ .|+.++.+|.|.+.|..+++.+.+.
T Consensus 312 ~tG~~--~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 312 RGGVE--LWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCCcE--EEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 98873 33222111 112222222 33 3667889999999999999877554
No 328
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.27 E-value=0.00083 Score=62.17 Aligned_cols=226 Identities=14% Similarity=0.076 Sum_probs=134.8
Q ss_pred CC-CCCEEEEecCCC-cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEE
Q 010748 206 RE-KGNFMAVGSMEP-AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 206 s~-~~~~la~g~~dg-~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
+| .+..++.+-.-| ...+||..++.....+. ...-..|.+|. .|+++|+ +|+
T Consensus 13 ~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-------------------a~~gRHFyGHg------~fs~dG~-~Ly 66 (305)
T PF07433_consen 13 HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-------------------APPGRHFYGHG------VFSPDGR-LLY 66 (305)
T ss_pred CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-------------------CCCCCEEecCE------EEcCCCC-EEE
Confidence 56 566777777766 46688887765443211 12223455773 7999955 666
Q ss_pred EE-----ecCCcEEEEeCC-CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC------------------CCcEEEEec
Q 010748 284 SA-----SADKQVKIWDVA-AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF------------------DRSVVMKDA 339 (502)
Q Consensus 284 sg-----s~dg~v~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~------------------dg~i~iwd~ 339 (502)
+. +..|.|-|||.. +-+.+..+..|.-....+.+.|++ ..|+++.. +-.+...|.
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 65 345889999998 667888888888777889999999 55555521 123445555
Q ss_pred CCCCCccce----EeecCCeeEEEeCCCCCCEEEEEeC-CC-------cEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748 340 RISTHSGFK----WAVAADVESLAWDPHAEHSFVVSLE-DG-------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 340 ~~~~~~~~~----~~~~~~v~~v~~~~~~~~~~~~~~~-dg-------~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
+++...... ..+...+..+++.+++. ++.+.. .| .|.++......... ..+......-.+.+
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~----~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGGALRLL----PAPEEQWRRLNGYI 219 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCCcceec----cCChHHHHhhCCce
Confidence 665544321 12455788899988764 444431 11 13333322210000 00001112335789
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC
Q 010748 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 470 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~ 470 (502)
-+|++++++..+.+|+=.-+.+.+||..+++......+ ..+..++..+++ | +++.+.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f-~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG-F-LVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc----CceeeeeecCCc-e-EEeCCC
Confidence 99999998844455666678899999999984322222 336667777776 3 555443
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00021 Score=71.53 Aligned_cols=142 Identities=12% Similarity=0.189 Sum_probs=92.0
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010748 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 220 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~ 220 (502)
-|.--++.-++.+|+.|++.| -||.|+...+....+... . .....|+..+ |++..++|.|+..|.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G-----~lyl~~R~~~~~~~~~~~---~-~~~~~~~~~v------s~~e~lvAagt~~g~ 99 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAG-----SVYLYNRHTGEMRKLKNE---G-ATGITCVRSV------SSVEYLVAAGTASGR 99 (726)
T ss_pred eEEEEEeecCCceEEEecccc-----eEEEEecCchhhhccccc---C-ccceEEEEEe------cchhHhhhhhcCCce
Confidence 444456677889999999888 888888766522111110 0 1122343333 678899999999999
Q ss_pred EEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCC-
Q 010748 221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG- 299 (502)
Q Consensus 221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~- 299 (502)
|.|+-++. ....+... ....-..|...|+||+|+++ ...|++|...|+|.+-.+.+.
T Consensus 100 V~v~ql~~-~~p~~~~~--------------------~t~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s~~ 157 (726)
T KOG3621|consen 100 VSVFQLNK-ELPRDLDY--------------------VTPCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDSRQ 157 (726)
T ss_pred EEeehhhc-cCCCccee--------------------eccccccCCceEEEEEeccc-ccEEeecCCCceEEEEEechhh
Confidence 99998875 22111111 11122248899999999999 569999999999999888772
Q ss_pred ---eeeEeeccCCCCeEEEEEcC
Q 010748 300 ---KCNLTLEHHTDKVQAVAWNH 319 (502)
Q Consensus 300 ---~~~~~~~~h~~~v~~l~~~~ 319 (502)
-..+.+-...+.|-.+.+..
T Consensus 158 ~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 158 AFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred hhccccceeeccCcceEEeeccc
Confidence 11222333456676676654
No 330
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.17 E-value=0.00071 Score=66.14 Aligned_cols=269 Identities=16% Similarity=0.211 Sum_probs=143.9
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeecc---cc------------CCCcceeeeecCCC
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI---II------------PAFPLCMAWLDCPL 203 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~---~~------------~~~~~~~~~~~~~~ 203 (502)
...+....|+|+|+.||..... .||+.+...+....| -++. +. -.....+-|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~------nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~W----- 108 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDN------NLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWW----- 108 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETT------EEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-----
T ss_pred ccccccceeecCCCeeEEEecC------ceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEE-----
Confidence 4578899999999999999754 788886544311111 1111 00 011233444
Q ss_pred CCCCCCCEEEEecCC-CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc--ccceeeEEeccCCCc
Q 010748 204 KDREKGNFMAVGSME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH--TDSVLGLAWNKEFRN 280 (502)
Q Consensus 204 ~~s~~~~~la~g~~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~ 280 (502)
||++++||....| ..|+.+.+..... .+ --.+..+.+-.-|..
T Consensus 109 --Spd~~~la~~~~d~~~v~~~~~~~~~~--------------------------------~~~~yp~~~~~~YPk~G~~ 154 (353)
T PF00930_consen 109 --SPDSKYLAFLRFDEREVPEYPLPDYSP--------------------------------PDSQYPEVESIRYPKAGDP 154 (353)
T ss_dssp ---TTSSEEEEEEEE-TTS-EEEEEEESS--------------------------------STESS-EEEEEE--BTTS-
T ss_pred --CCCCCEEEEEEECCcCCceEEeeccCC--------------------------------ccccCCcccccccCCCCCc
Confidence 8999999987655 4555555421000 00 012444444222221
Q ss_pred EEEEEecCCcEEEEeCCCCeeeE-e-e---ccCCCCeEEEEEcCCCCcEEEEE--eCCC---cEEEEecCCCCCccceEe
Q 010748 281 ILASASADKQVKIWDVAAGKCNL-T-L---EHHTDKVQAVAWNHHSPQILLSG--SFDR---SVVMKDARISTHSGFKWA 350 (502)
Q Consensus 281 ~l~sgs~dg~v~vwd~~~~~~~~-~-~---~~h~~~v~~l~~~~~~~~~l~s~--s~dg---~i~iwd~~~~~~~~~~~~ 350 (502)
. . .-.+.|+|+.+++... . . ..-..-+..+.|.+++ ..|+.. ..+. .+.++|..++........
T Consensus 155 n-p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 155 N-P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp -------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred C-C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 1 1 1246778888876532 1 1 2234568899999998 523333 3332 466677776554432222
Q ss_pred -ecCCe---eEEEeC-CCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeE-EEEcCCCCCEEEEEe
Q 010748 351 -VAADV---ESLAWD-PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-ISYNPLVPNLLATGS 424 (502)
Q Consensus 351 -~~~~v---~~v~~~-~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~t~s 424 (502)
..+.| ....|. +++..++.....+|.-++|-+... ......+....-.|.. +.+++.+..+.+++.
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--------GGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--------SSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc--------ccceeccccCceeecccceEcCCCCEEEEEec
Confidence 22222 245554 777777777778887666555443 2334455555566744 677888756666776
Q ss_pred CCC----cEEEEECC-CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748 425 TDK----MVKLWDLS-NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 425 ~dg----~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d 471 (502)
.++ .|..-++. .+.+.+ +....+.-..+.|||+++|++.+.+.-
T Consensus 301 ~~~p~~r~lY~v~~~~~~~~~~---LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 301 GDNPGERHLYRVSLDSGGEPKC---LTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp SGGTTSBEEEEEETTETTEEEE---SSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred CCCCCceEEEEEEeCCCCCeEe---ccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 533 46666676 555333 333323227899999999877766543
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00013 Score=72.14 Aligned_cols=203 Identities=13% Similarity=0.079 Sum_probs=121.3
Q ss_pred cccceeeEEeccCCCcEEEEEecC---CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEE--EEec
Q 010748 265 HTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV--MKDA 339 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~d---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~--iwd~ 339 (502)
-...+..-+|+|++..+.+..-.. ..+.++++.+++....+. ..+.-..-+|+|+|..++++...||... ++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 345667778999865544443222 359999999886544443 2333345679999988888888888654 5567
Q ss_pred CCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCE
Q 010748 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 419 (502)
.+..... +....+.-..=.|+|+|..+++++...|.-.+|-.... ...+..+....+.-..-.|+|+| .+
T Consensus 270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--------g~~~~riT~~~~~~~~p~~SpdG-~~ 339 (425)
T COG0823 270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--------GSQVTRLTFSGGGNSNPVWSPDG-DK 339 (425)
T ss_pred CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC--------CCceeEeeccCCCCcCccCCCCC-CE
Confidence 6665333 22233333466799999988888888887666654433 12334444444444477899999 55
Q ss_pred EEEEeC-CCc--EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 420 LATGST-DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 420 l~t~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
|+..+. .|. |.+.++.++.. .....+......-.|.|++..++.+++.-+.=.++.+..
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~---~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~ 401 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGK---IRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSL 401 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCc---EEEccccccCCCCCcCCCCceEEEeccCCCCceEEEeec
Confidence 554443 454 66666666542 112222233445678888886555555443444444433
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.15 E-value=0.00032 Score=74.41 Aligned_cols=202 Identities=15% Similarity=0.249 Sum_probs=131.2
Q ss_pred ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC----C
Q 010748 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----I 341 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~----~ 341 (502)
.+.|.++.|..+ .+-++.+...|.|.+-|..+.... ....-...|.+++|+|++ .+++..+..+++.+-.-. .
T Consensus 68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecc-cceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchh
Confidence 368999999998 667888899999999988776432 222346789999999999 888888888887764321 0
Q ss_pred -----------CCCccceEe-----------------------------ecCCeeEEEeCCCCCCEEEEE-----eCCCc
Q 010748 342 -----------STHSGFKWA-----------------------------VAADVESLAWDPHAEHSFVVS-----LEDGT 376 (502)
Q Consensus 342 -----------~~~~~~~~~-----------------------------~~~~v~~v~~~~~~~~~~~~~-----~~dg~ 376 (502)
.+.+..-|+ ....-++++|.-+|. +|+++ .....
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccCCcee
Confidence 010110010 112234589998876 56663 22368
Q ss_pred EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCe-eEEEEecCCCCcE
Q 010748 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQP-SCIASRNPKAGAV 452 (502)
Q Consensus 377 v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~~-~~~~~~~~~~~~v 452 (502)
|++||-. +. .-..-....+.-.+++|-|.| .++++.. .|+.|.+|.-+..+. ......+.....|
T Consensus 224 irV~drE-g~---------Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 224 IRVYDRE-GA---------LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EEEeccc-ch---------hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 9999987 31 111111122334678999987 7777754 356799998655331 1233344444559
Q ss_pred EEEEEcCCCCcEEEE---EeCCCcEEEEECCCCc
Q 010748 453 FSVAFSEDSPFVLAI---GGSKGKLEIWDTLSDA 483 (502)
Q Consensus 453 ~~~~~spd~~~ll~s---g~~dg~i~vwd~~~~~ 483 (502)
..++|+.++. +||+ ......|++|-+.+..
T Consensus 293 e~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 293 EELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred heeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 9999999998 6776 4555569999887644
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.11 E-value=0.00069 Score=68.59 Aligned_cols=258 Identities=13% Similarity=0.156 Sum_probs=135.7
Q ss_pred EEEecCCCcEEEeeCCCCCCcCcceecCCcchh------hhhhccccCCcccccccccCcccceeeEEec---cCCCcEE
Q 010748 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRNIL 282 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~~~l 282 (502)
+.+|+..|.++|+-+.+++.+..+.++...... ..++.............-..|.- .+++. -+|+ +|
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp---~~s~t~g~ydGr-~~ 144 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHP---HMSFTDGTYDGR-YL 144 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCC---cccccCCcccee-EE
Confidence 678899999999999999888777666543221 00000000000000000001111 11111 1333 44
Q ss_pred EEEe-cCCcEEEEeCCCCeeeEeecc-CCCCeEEEE-------------------EcCCCCcEEEEEeCCCcEEEEecCC
Q 010748 283 ASAS-ADKQVKIWDVAAGKCNLTLEH-HTDKVQAVA-------------------WNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 283 ~sgs-~dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~-------------------~~~~~~~~l~s~s~dg~i~iwd~~~ 341 (502)
+.-. ....|-.-++...++-..+.- ....+..++ +.|+|..+..+.-..+.+.+.|..+
T Consensus 145 findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~et 224 (635)
T PRK02888 145 FINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAET 224 (635)
T ss_pred EEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECcc
Confidence 4433 355566666655544332210 111222222 2344422222333445667777765
Q ss_pred CCCccceEeecCCeeEEEeCCCCCCEEEEEe---------------------------------------CCCcEEEEEC
Q 010748 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSL---------------------------------------EDGTIKGFDI 382 (502)
Q Consensus 342 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---------------------------------------~dg~v~i~d~ 382 (502)
.+.. ......+....+.++|++...++++. .++.|.++|.
T Consensus 225 meV~-~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~ 303 (635)
T PRK02888 225 MEVA-WQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG 303 (635)
T ss_pred ceEE-EEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence 4332 23334455566777777664444431 1234666666
Q ss_pred CCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------eEEEEecCCCCcE
Q 010748 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SCIASRNPKAGAV 452 (502)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v 452 (502)
++.... ....+..+. -......+.++|+|..+++++..+.+|.|.|+.+.+. ..+.......+ .
T Consensus 304 ~t~~~~----~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-P 377 (635)
T PRK02888 304 RKAANA----GSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-P 377 (635)
T ss_pred CccccC----CcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-c
Confidence 541000 012233333 3455688999999966666777799999999987542 11223332233 4
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 453 ~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
...+|.++|. .+.|---|..|..|++.+
T Consensus 378 LHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 378 LHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 4678999987 688888899999999976
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0049 Score=57.89 Aligned_cols=247 Identities=15% Similarity=0.116 Sum_probs=136.9
Q ss_pred CCCCCEEEEec----------CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEec
Q 010748 206 REKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN 275 (502)
Q Consensus 206 s~~~~~la~g~----------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 275 (502)
+|+++.+++++ ..-.|.+||..+......+.+..+ ++.. .......++++
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k---------------~R~~-----~~~~~~~~~ls 103 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK---------------PRAQ-----VVPYKNMFALS 103 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS----------------B-------BS--GGGEEE-
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc---------------chhe-----ecccccceEEc
Confidence 78999888743 335799999987654443333221 0000 11123345777
Q ss_pred cCCCcEEEEE--ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE-ee-
Q 010748 276 KEFRNILASA--SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV- 351 (502)
Q Consensus 276 ~~~~~~l~sg--s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~- 351 (502)
.+++ +++.. +--.+|.|-|+..++.+..+.. . .+.. .-|.++.-|.+-+.||++....+.......... ..
T Consensus 104 ~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-P-GC~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F 178 (342)
T PF06433_consen 104 ADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT-P-GCWL--IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF 178 (342)
T ss_dssp TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG-T-SEEE--EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred cCCc-EEEEEccCCCCeEEEEECCCCceeeeecC-C-CEEE--EEecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence 7754 44444 3345799999999998887752 2 2222 234444568899999999999888544332111 10
Q ss_pred ---cCC-eeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec----------cCCCeeEEEEcCCCC
Q 010748 352 ---AAD-VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVP 417 (502)
Q Consensus 352 ---~~~-v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~sp~~~ 417 (502)
..+ +..-++...+. .++--+-.|.|+-.|+..... .....+.. -.+.-.-+++++..
T Consensus 179 ~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~-------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~- 249 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA-------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS- 249 (342)
T ss_dssp STTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE-------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-
T ss_pred CCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcc-------cccCcccccCccccccCcCCcceeeeeecccc-
Confidence 111 12223333222 455567788898888876521 11122211 12344557777755
Q ss_pred CEEEEEe---CCC-------cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEE-EEeCCCcEEEEECCCCcccc
Q 010748 418 NLLATGS---TDK-------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLA-IGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 418 ~~l~t~s---~dg-------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~-sg~~dg~i~vwd~~~~~~~~ 486 (502)
+.|++.- .++ .|.+||+.+.+......+. .++.+|+.+.+..-+|. ....++.|.|||..+++.++
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 3333321 122 2778888888743333332 45779999987754554 44567899999999999887
Q ss_pred ccc
Q 010748 487 NRF 489 (502)
Q Consensus 487 ~~~ 489 (502)
+.-
T Consensus 327 ~~~ 329 (342)
T PF06433_consen 327 SIE 329 (342)
T ss_dssp EE-
T ss_pred ehh
Confidence 643
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00048 Score=68.23 Aligned_cols=180 Identities=16% Similarity=0.143 Sum_probs=112.0
Q ss_pred cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC
Q 010748 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 366 (502)
.+.+-|.. +.....+..-...+..-+|+|++..+....-.. ..+.++++.++.... .....+.-..-+|+|++..
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCccCCccCCCCCCE
Confidence 34444433 444445544456677778999985544443333 348889998877654 3334555666789999998
Q ss_pred EEEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCeeEE
Q 010748 367 SFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCI 442 (502)
Q Consensus 367 ~~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~vwd~~~~~~~~~ 442 (502)
++++...+|. |+++|+... ....+....+.-+.-.|+|+|..++++.+..|. |.++++...... .
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~----------~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-r 320 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGK----------NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-R 320 (425)
T ss_pred EEEEECCCCCccEEEEcCCCC----------cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-E
Confidence 8888888886 555666654 133344333444467899999666666666776 555566665532 2
Q ss_pred EEecCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCcc
Q 010748 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAG 484 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~--i~vwd~~~~~~ 484 (502)
.+... +.-..-.|+|+|.+++......|. |.+.++.++..
T Consensus 321 iT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 321 LTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 22222 222277899999976655544454 77777766663
No 336
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.00 E-value=0.0014 Score=60.17 Aligned_cols=184 Identities=14% Similarity=0.073 Sum_probs=111.0
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
++.++++++.++.|..||..++..+..... . ..+...... . +..++.++.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~---------------------------~~~~~~~~~-~-~~~v~v~~~ 84 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-P---------------------------GPISGAPVV-D-GGRVYVGTS 84 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-S---------------------------SCGGSGEEE-E-TTEEEEEET
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-c---------------------------ccccceeee-c-ccccccccc
Confidence 577788888999999999987654432211 0 000000111 2 236677778
Q ss_pred CCcEEEEeCCCCeeeEee-ccCC---CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCC---------
Q 010748 288 DKQVKIWDVAAGKCNLTL-EHHT---DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD--------- 354 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~-~~h~---~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------- 354 (502)
++.|..+|+.+|+.+..+ .... .....+.....+ ..++++..++.|..+|+++++..-........
T Consensus 85 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 85 DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred eeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 889999999999998884 3221 111122222224 67888888999999999988764322221111
Q ss_pred -e-eEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010748 355 -V-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 355 -v-~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
+ ..+.+. . . .+++++.+|.+..+|+.++ ..++... ...+..+ ....+ ..|+.++.++.|..|
T Consensus 164 ~~~~~~~~~-~-~-~v~~~~~~g~~~~~d~~tg---------~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 164 DINGSPVIS-D-G-RVYVSSGDGRVVAVDLATG---------EKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYAL 227 (238)
T ss_dssp TEEEEEECC-T-T-EEEEECCTSSEEEEETTTT---------EEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEE
T ss_pred ccccceEEE-C-C-EEEEEcCCCeEEEEECCCC---------CEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEE
Confidence 1 223333 2 3 6777777886444499987 4445433 2223331 23444 677777799999999
Q ss_pred ECCCCC
Q 010748 433 DLSNNQ 438 (502)
Q Consensus 433 d~~~~~ 438 (502)
|+.+++
T Consensus 228 d~~tG~ 233 (238)
T PF13360_consen 228 DLKTGK 233 (238)
T ss_dssp ETTTTE
T ss_pred ECCCCC
Confidence 999987
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.98 E-value=7.1e-05 Score=74.82 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=95.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+..+++++.|+.-|.+++|+-..+.... ....+..+.+..+..++. ..++|.|
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~--------------------------~~~~~~~~~~~~~~vs~~-e~lvAag 94 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRK--------------------------LKNEGATGITCVRSVSSV-EYLVAAG 94 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhc--------------------------ccccCccceEEEEEecch-hHhhhhh
Confidence 4579999999999999999976432211 111124455666777887 6799999
Q ss_pred ecCCcEEEEeCCCCee-----eEee-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC----CccceEeecCCe
Q 010748 286 SADKQVKIWDVAAGKC-----NLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFKWAVAADV 355 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~-----~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v 355 (502)
+..|.|.++-++.+.+ +... +.|...|+|++|++++ ..+++|...|+|.+-.+.+.. .........+.|
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 9999999998876432 1112 3478899999999999 899999999999998887621 112233445667
Q ss_pred eEEEeCCCCCCEEEEEeCC
Q 010748 356 ESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 356 ~~v~~~~~~~~~~~~~~~d 374 (502)
..+.+.. . ++++++.-
T Consensus 174 VQlD~~q--~-~LLVStl~ 189 (726)
T KOG3621|consen 174 VQLDYLQ--S-YLLVSTLT 189 (726)
T ss_pred EEeeccc--c-eehHhhhh
Confidence 7676654 3 44444433
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.00076 Score=70.79 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=98.4
Q ss_pred CcEEEEE-ecCCcEEEEeCCCCeeeEeeccCCCC-eEEEEEcCC----CCcEEEEEeCCCcEEEEecCCCCCcc-----c
Q 010748 279 RNILASA-SADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHH----SPQILLSGSFDRSVVMKDARISTHSG-----F 347 (502)
Q Consensus 279 ~~~l~sg-s~dg~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~-----~ 347 (502)
+++|+.- .....|+-.|++.|+.+..+..|... |..++-... .+...+.|-.+..+..||.|...... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 4454443 45678999999999999999877654 555543221 12345678888999999999754211 1
Q ss_pred eEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC
Q 010748 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
.........|++-+.+| .+++|+.+|.||+||-- + ......+.+-..+|.+|..+.+| ++|++.+ +.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g--------~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~t 639 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-G--------KRAKTALPGLGDPIIGIDVTADG-KWILATC-KT 639 (794)
T ss_pred ccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-c--------hhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cc
Confidence 12344567788777654 79999999999999943 2 24455566778999999999999 5554443 44
Q ss_pred cEEEEEC
Q 010748 428 MVKLWDL 434 (502)
Q Consensus 428 ~i~vwd~ 434 (502)
.|.|++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 6777774
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.86 E-value=0.0043 Score=55.07 Aligned_cols=149 Identities=10% Similarity=0.011 Sum_probs=96.3
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 353 (502)
..++...+++.||..+.+.--|..+|+....-. -...+.+-+.- -| .+++.|.+.|.+++.+.+++...........
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 334446789999999999999999998765432 12333332222 23 6799999999999999999865543332222
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
--......+++. ++++|+.|++.+..|.++. .+++..+...+-..+-++.|-. ..|+.+...|.|.--.
T Consensus 95 vk~~a~~d~~~g-lIycgshd~~~yalD~~~~---------~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 95 VKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY---------GCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVT 163 (354)
T ss_pred hccceEEcCCCc-eEEEecCCCcEEEeccccc---------ceEEecccCCceeccceecCCC-ceEEEEeccceEEEEc
Confidence 222334455554 8999999999999999986 6677765544444444555522 4455555555554444
Q ss_pred CCC
Q 010748 434 LSN 436 (502)
Q Consensus 434 ~~~ 436 (502)
.+.
T Consensus 164 ~~~ 166 (354)
T KOG4649|consen 164 KNP 166 (354)
T ss_pred cCC
Confidence 433
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.85 E-value=0.00047 Score=72.32 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=99.0
Q ss_pred cEEEEE-eCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCC------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCc
Q 010748 323 QILLSG-SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 395 (502)
Q Consensus 323 ~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~ 395 (502)
++|+.. .....|+-.|+..++.+. .|.....+.-..+.|+. +...++|-.+..|..||.|-... +
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~-eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------k 565 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVE-EWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------K 565 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEE-EeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-------c
Confidence 444443 356788889999888665 56555544444555531 23567788899999999997521 1
Q ss_pred cceE---EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 010748 396 SSFT---LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472 (502)
Q Consensus 396 ~~~~---~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg 472 (502)
.+.. ........+|++-+.+ .+||.|+.+|.||+||--..+ ....+++-..+|.+|..+.||+|+|||+ +.
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc--~t 639 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC--KT 639 (794)
T ss_pred eeeccccccccCCCceEEEecCC--ceEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee--cc
Confidence 2211 1123445777777764 589999999999999954332 4455667789999999999999988765 45
Q ss_pred cEEEEECC
Q 010748 473 KLEIWDTL 480 (502)
Q Consensus 473 ~i~vwd~~ 480 (502)
.|.++++.
T Consensus 640 yLlLi~t~ 647 (794)
T PF08553_consen 640 YLLLIDTL 647 (794)
T ss_pred eEEEEEEe
Confidence 78888874
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0071 Score=59.68 Aligned_cols=212 Identities=13% Similarity=0.110 Sum_probs=140.5
Q ss_pred ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCc
Q 010748 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHS 345 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~ 345 (502)
.-..++.++.+...+++...++.|.+.|..+.+......-- .....+++.+++..+.++-. .++++.+.|..+.+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 34577888886667777777799999998888777766432 26778999999954444444 3788999998887766
Q ss_pred cceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748 346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 346 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
.. .........++++|++...+++-..++.|.++|........ . ....... -...-..+.++|++....++...
T Consensus 154 ~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 154 AT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVG-VGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccc-cCCCCceEEECCCCCEEEEEecc
Confidence 64 33332338899999988666666689999999976542100 0 0000111 12334678899998545555444
Q ss_pred C--CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 426 D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 426 d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
. +.+...|..++............ ....+.++|+|.++.+.-+..+.+.+-|..+......
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 4 68999998887632221111222 4567899999997555445568899999888766554
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.85 E-value=0.0075 Score=60.09 Aligned_cols=231 Identities=14% Similarity=0.183 Sum_probs=111.0
Q ss_pred cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccc
Q 010748 189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268 (502)
Q Consensus 189 ~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 268 (502)
...+|..+.+ +|+|+++++++ +|.-.|+...... ....+.
T Consensus 31 ~~~~p~~ls~-------npngr~v~V~g-~geY~iyt~~~~r--------------------------------~k~~G~ 70 (443)
T PF04053_consen 31 CEIYPQSLSH-------NPNGRFVLVCG-DGEYEIYTALAWR--------------------------------NKAFGS 70 (443)
T ss_dssp -SS--SEEEE--------TTSSEEEEEE-TTEEEEEETTTTE--------------------------------EEEEEE
T ss_pred CCcCCeeEEE-------CCCCCEEEEEc-CCEEEEEEccCCc--------------------------------ccccCc
Confidence 3444566655 79999999955 6777777732100 012355
Q ss_pred eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce
Q 010748 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 348 (502)
-..+.|.+. +.+|+-...++|.|+.--.......++. ...+..|-. | .+|+..+.+ .|.+||+.+++.+. .
T Consensus 71 g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~-~ 141 (443)
T PF04053_consen 71 GLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIR-R 141 (443)
T ss_dssp -SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEE-E
T ss_pred eeEEEEecC--ccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHcceee-E
Confidence 667889884 4677777788999964223333334432 123444433 5 666666544 89999999887654 2
Q ss_pred EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCC--CCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC
Q 010748 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK--SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 426 (502)
Q Consensus 349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d 426 (502)
.... +|..+.|++++. +++..+ +..+.+++..... ..........+..+......|.+..|..+ .++-.+..
T Consensus 142 i~v~-~vk~V~Ws~~g~-~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT~~ 215 (443)
T PF04053_consen 142 IDVS-AVKYVIWSDDGE-LVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYTTSN 215 (443)
T ss_dssp ESS--E-EEEEE-TTSS-EEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE-TT
T ss_pred EecC-CCcEEEEECCCC-EEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEEcCC
Confidence 2222 389999999876 555555 4456666543210 00000000133444443677888888853 34333333
Q ss_pred CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
.++. +..+....+..+. .++.=+...|... .+.....++.|..+.+..
T Consensus 216 -~lkY--l~~Ge~~~i~~ld---~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 216 -HLKY--LVNGETGIIAHLD---KPLYLLGYLPKEN-RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEE--EETTEEEEEEE-S---S--EEEEEETTTT-EEEEE-TT--EEEEE--H
T ss_pred -eEEE--EEcCCcceEEEcC---CceEEEEEEccCC-EEEEEECCCCEEEEEECH
Confidence 6666 4445433333332 4566677777555 466677888888877643
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.83 E-value=0.027 Score=56.44 Aligned_cols=254 Identities=14% Similarity=0.198 Sum_probs=131.7
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-
Q 010748 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP- 219 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg- 219 (502)
.+..+.++|++++||.+-..++.-...+++++...+ .+.. .....+.+ ..+.| .++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~-d~i~~~~~-~~~~W-------~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLP-DGIENPKF-SSVSW-------SDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEE-EEEEEEES-EEEEE-------CTTSSEEEEEECSTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcC-Cccccccc-ceEEE-------eCCCCEEEEEEeCcc
Confidence 345788999999999886665444567777776664 3322 11111111 22677 57777766554333
Q ss_pred ----------cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCC
Q 010748 220 ----------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 289 (502)
Q Consensus 220 ----------~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg 289 (502)
.|+.|.+.+..... ..++. ...+......+..+++++.+++......
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe----------------------~~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSED-ELVFE----------------------EPDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG--EEEEC-----------------------TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred cccccCCCCcEEEEEECCCChHhC-eeEEe----------------------ecCCCcEEEEEEecCcccEEEEEEEccc
Confidence 36677765422110 01111 1111122567888999665555444433
Q ss_pred ---cEEEEeCCCC----eeeEeeccCCCCe-EEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCc---cceEeecCC-
Q 010748 290 ---QVKIWDVAAG----KCNLTLEHHTDKV-QAVAWNHHSPQILLSGS---FDRSVVMKDARISTHS---GFKWAVAAD- 354 (502)
Q Consensus 290 ---~v~vwd~~~~----~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~---~~~~~~~~~- 354 (502)
.|.+.++..+ .....+......+ ..+... .+ .+++... ..+.|...++...... .....+...
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence 4778888764 2333333333334 334443 33 4444443 2467777788776641 123334443
Q ss_pred -eeEEEeCCCCCCEEEEEeCCC--cEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeC---CC
Q 010748 355 -VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGST---DK 427 (502)
Q Consensus 355 -v~~v~~~~~~~~~~~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~---dg 427 (502)
+..+.. .+..+++....++ .|+++++... .....+... .+.|..+...+..+.+.++.+. -+
T Consensus 328 ~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~ 396 (414)
T PF02897_consen 328 SLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG---------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPP 396 (414)
T ss_dssp EEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T---------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEE
T ss_pred eEEEEEE--ECCEEEEEEEECCccEEEEEECCCC---------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCC
Confidence 444444 3455666666666 4788888822 233333332 3445666666666555555443 35
Q ss_pred cEEEEECCCCCeeEE
Q 010748 428 MVKLWDLSNNQPSCI 442 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~ 442 (502)
++..||+.+++...+
T Consensus 397 ~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 397 TVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEETTTTCEEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 688889998875443
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.81 E-value=0.0031 Score=61.91 Aligned_cols=213 Identities=15% Similarity=0.138 Sum_probs=117.9
Q ss_pred ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-------------------------------------------eeEe
Q 010748 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-------------------------------------------CNLT 304 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-------------------------------------------~~~~ 304 (502)
.|+.++|.+. ..-|+.|...|.|.||.....+ +...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4888999998 4589999999999998653211 1111
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE--------eecCCeeEEEeCC---C----CCCEEE
Q 010748 305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDP---H----AEHSFV 369 (502)
Q Consensus 305 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~v~~~~---~----~~~~~~ 369 (502)
+....++|++++.+.-| +++.|..+|.+.|.|+|.+..+.... .....++++.|.. . ..-+++
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22346899999998777 89999999999999999876543211 1223577777752 1 123788
Q ss_pred EEeCCCcEEEEECCC-CCCCCCCCCCccceEEeccCCCeeEEE-EcCC--------------------CCCEEEEEeCCC
Q 010748 370 VSLEDGTIKGFDIRT-AKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPL--------------------VPNLLATGSTDK 427 (502)
Q Consensus 370 ~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~-~sp~--------------------~~~~l~t~s~dg 427 (502)
+|+..|.+.+|.+.. ...... .........+.++|..+. |+.+ .+.++++++ +.
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~---v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~ 235 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFS---VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES 235 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EE---EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred EEeCCCCEEEEEEecCCCCceE---EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence 999999999998852 110000 011111124555655554 3211 113444444 66
Q ss_pred cEEEEECCCCCeeEEEEecCCCCcEEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFS----EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s----pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
.+|++...+.+... ......-....+.+- ..+.+.|++-..+|.|++|.+-.-+.+.+.-
T Consensus 236 ~irv~~~~~~k~~~--K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 236 DIRVFKPPKSKGAH--KSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp EEEEE-TT---EEE--EE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred ceEEEeCCCCcccc--eeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 79999998877422 222221223344453 1233468888999999999998877765543
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.79 E-value=0.019 Score=58.71 Aligned_cols=233 Identities=13% Similarity=0.124 Sum_probs=126.7
Q ss_pred CEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccce-eeEEeccCCCcEEEEEe--
Q 010748 210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV-LGLAWNKEFRNILASAS-- 286 (502)
Q Consensus 210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~~l~sgs-- 286 (502)
..+++++.++.|.-+|..+++.+........ . .....+ .+..+.. + +++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~---------------~-------~~~~~i~ssP~v~~--~-~v~vg~~~ 165 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQ---------------V-------PPGYTMTGAPTIVK--K-LVIIGSSG 165 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCC---------------c-------CcceEecCCCEEEC--C-EEEEeccc
Confidence 6888888999999999988765443211000 0 000001 0111111 2 444443
Q ss_pred -------cCCcEEEEeCCCCeeeEeeccCCCC--------------------e-EEEEEcCCCCcEEEEEeCCC------
Q 010748 287 -------ADKQVKIWDVAAGKCNLTLEHHTDK--------------------V-QAVAWNHHSPQILLSGSFDR------ 332 (502)
Q Consensus 287 -------~dg~v~vwd~~~~~~~~~~~~h~~~--------------------v-~~l~~~~~~~~~l~s~s~dg------ 332 (502)
.++.|..+|..+|+.+..+...... | .+..+.+.+ .+++.++.++
T Consensus 166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~ 244 (488)
T cd00216 166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWG 244 (488)
T ss_pred cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccC
Confidence 4678999999999988777532110 1 122333334 5677776555
Q ss_pred ------------cEEEEecCCCCCccceEeecCCee------EEEeC----CCC--CCEEEEEeCCCcEEEEECCCCCCC
Q 010748 333 ------------SVVMKDARISTHSGFKWAVAADVE------SLAWD----PHA--EHSFVVSLEDGTIKGFDIRTAKSD 388 (502)
Q Consensus 333 ------------~i~iwd~~~~~~~~~~~~~~~~v~------~v~~~----~~~--~~~~~~~~~dg~v~i~d~~~~~~~ 388 (502)
.|..+|..+++..-.......... ...+. -++ ...+++++.+|.+..+|.+++
T Consensus 245 ~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG--- 321 (488)
T cd00216 245 GRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG--- 321 (488)
T ss_pred CccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC---
Confidence 688888887765421111111000 00110 111 125788889999999999998
Q ss_pred CCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE------------------eCCCcEEEEECCCCCeeEEEEecCC--
Q 010748 389 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG------------------STDKMVKLWDLSNNQPSCIASRNPK-- 448 (502)
Q Consensus 389 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~------------------s~dg~i~vwd~~~~~~~~~~~~~~~-- 448 (502)
..++..... ...++.+| ..++.+ ..+|.|.-.|+.+++. +......
T Consensus 322 ------~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~--~W~~~~~~~ 387 (488)
T cd00216 322 ------KLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV--VWEKREGTI 387 (488)
T ss_pred ------cEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE--eeEeeCCcc
Confidence 555554321 11223333 222221 2357788888888873 3333221
Q ss_pred C------CcEE--EEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 449 A------GAVF--SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 449 ~------~~v~--~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
. .+.. .+.. .+. +|.+++.+|.|+.+|..+++.+-+.
T Consensus 388 ~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 388 RDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred ccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEE
Confidence 0 1111 1222 334 4777889999999999999988553
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.79 E-value=0.0026 Score=62.44 Aligned_cols=252 Identities=12% Similarity=0.063 Sum_probs=125.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcc----------hh-----hhhhcccc-CCcccccccccCcccce
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID----------EE-----KKKKKSKK-GKKSSIKYKKGSHTDSV 269 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~----------~~-----~~~~~~~~-~~~~~~~~~~~~h~~~V 269 (502)
.+...-||+|...|.|-||.+...+............ .. ...+.... +....+...+....++|
T Consensus 10 a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~v 89 (395)
T PF08596_consen 10 APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPV 89 (395)
T ss_dssp ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SE
T ss_pred cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCCcE
Confidence 4667789999999999999875433221000000000 00 00000000 01122333445568999
Q ss_pred eeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee--cc------CCCCeEEEEEcC---CC----CcEEEEEeCCCcE
Q 010748 270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EH------HTDKVQAVAWNH---HS----PQILLSGSFDRSV 334 (502)
Q Consensus 270 ~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~--~~------h~~~v~~l~~~~---~~----~~~l~s~s~dg~i 334 (502)
++++.+.- + ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- .+ .-.|++|+..|.+
T Consensus 90 tal~~S~i-G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v 167 (395)
T PF08596_consen 90 TALKNSDI-G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV 167 (395)
T ss_dssp EEEEE-BT-S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred eEEecCCC-c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence 99999866 4 9999999999999999887766542 22 345788888861 11 1578899999999
Q ss_pred EEEecCCC--C-CccceE----eecCCeeEEE-eCCCCC-------------------CEEEEEeCCCcEEEEECCCCCC
Q 010748 335 VMKDARIS--T-HSGFKW----AVAADVESLA-WDPHAE-------------------HSFVVSLEDGTIKGFDIRTAKS 387 (502)
Q Consensus 335 ~iwd~~~~--~-~~~~~~----~~~~~v~~v~-~~~~~~-------------------~~~~~~~~dg~v~i~d~~~~~~ 387 (502)
.+|.+--. . ...... .+.+.+..+. ++.+.. .-+++......++++...+.
T Consensus 168 ~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~-- 245 (395)
T PF08596_consen 168 LTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS-- 245 (395)
T ss_dssp EEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----
T ss_pred EEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC--
Confidence 99987521 1 111111 2234444443 322110 12444455778999988765
Q ss_pred CCCCCCCccceEEeccCCCeeEEEEcC----CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC--CCCcEEEEEEcCCC
Q 010748 388 DPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDS 461 (502)
Q Consensus 388 ~~~~~~~~~~~~~~~h~~~v~~l~~sp----~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~spd~ 461 (502)
+.............++.+-+ .+...|++-..+|.|++|.+...+......+.. ....+....++++|
T Consensus 246 -------k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 246 -------KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp --------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred -------cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 33332222222233344421 123788888999999999999887544444321 12234466778898
Q ss_pred CcEEEEEe
Q 010748 462 PFVLAIGG 469 (502)
Q Consensus 462 ~~ll~sg~ 469 (502)
.. ++-.|
T Consensus 319 di-~~~~g 325 (395)
T PF08596_consen 319 DI-FYWTG 325 (395)
T ss_dssp -E-EEE-S
T ss_pred CE-EEEeC
Confidence 84 54433
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.78 E-value=0.012 Score=55.26 Aligned_cols=239 Identities=17% Similarity=0.162 Sum_probs=129.4
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
..++.|++|+.+| |.++++..... + .. ..+...|..|...+..+ .|++-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--~---------------------~~-----i~~~~~I~ql~vl~~~~-~llvL- 53 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--P---------------------TR-----ILKLSSITQLSVLPELN-LLLVL- 53 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--c---------------------ee-----EeecceEEEEEEecccC-EEEEE-
Confidence 3589999999988 88998821110 0 00 01233399999999844 44443
Q ss_pred cCCcEEEEeCCCCeeeEee--------------ccCCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEecCCCC----Ccc
Q 010748 287 ADKQVKIWDVAAGKCNLTL--------------EHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARIST----HSG 346 (502)
Q Consensus 287 ~dg~v~vwd~~~~~~~~~~--------------~~h~~~v~~l~--~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~ 346 (502)
.|+.|.++++..-...... ......+...+ -...+ ...++....+.|.+|...... ...
T Consensus 54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCccccccee
Confidence 3599999998755433311 11233444444 12333 344445555689998887642 222
Q ss_pred ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCcc---ceEEeccCCCeeEEEEcCCCCCEEEEE
Q 010748 347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 347 ~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~sp~~~~~l~t~ 423 (502)
........+.+++|.+ +.+++|..++ ..+.|+.++....-...... .........++..+.... + .+|++.
T Consensus 133 ke~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~ 206 (275)
T PF00780_consen 133 KEISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N-EFLLCY 206 (275)
T ss_pred EEEEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c-eEEEEe
Confidence 3456678899999984 3577776544 77888886532110000000 000111223444444443 3 455542
Q ss_pred eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010748 424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
+..-.+.|... ++.....+.- ...+.++++. .+|+++. +. +.|.||++.+++.++..-.+
T Consensus 207 --~~~g~fv~~~G-~~~r~~~i~W-~~~p~~~~~~--~pyli~~-~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 207 --DNIGVFVNKNG-EPSRKSTIQW-SSAPQSVAYS--SPYLIAF-SS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred --cceEEEEcCCC-CcCcccEEEc-CCchhEEEEE--CCEEEEE-CC-CEEEEEECcCCcEEEEEECC
Confidence 33344445433 3222112221 2345566663 4565553 33 56999999999888766544
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.78 E-value=0.00099 Score=51.54 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=72.0
Q ss_pred eeeEEe---ccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCc
Q 010748 269 VLGLAW---NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS 345 (502)
Q Consensus 269 V~~l~~---~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 345 (502)
|++|++ ..++.+.|+.||.|..|++|+- ...+..+. ..+.|++|+-...+ .|+.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~R--- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQR--- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcce---
Confidence 445554 4566789999999999999983 45667776 46788888877764 7999999999999976321
Q ss_pred cceEeecCCeeEEEeC---CCCCCEEEEEeCCCcEE
Q 010748 346 GFKWAVAADVESLAWD---PHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 346 ~~~~~~~~~v~~v~~~---~~~~~~~~~~~~dg~v~ 378 (502)
.........+.++.+. .++..-+++|-.+|.|-
T Consensus 74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1222334456666543 34445799999999874
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.75 E-value=0.034 Score=52.37 Aligned_cols=252 Identities=15% Similarity=0.153 Sum_probs=129.8
Q ss_pred cccccccCCCceEEEEEecC--Cc---ceeEEEEEecCCCCCCCeeeeeccccCCCcceee-eecCCCCCCCCCCEEEEe
Q 010748 142 LEDMTINPNDAVIVCARNED--DV---SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMA-WLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~--~~---~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~la~g 215 (502)
.-.+.++|+++.+.++.+-- .. .+=-|-+|+.. .|....++.+|..|-... -.....+.+.+++++++.
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-----TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-----TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-----TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-----cCcccceEecCCcchheecccccceEEccCCcEEEEE
Confidence 34567899999988764210 00 00022334433 555666677776422111 011112335667766665
Q ss_pred cCC--CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEE
Q 010748 216 SME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 216 ~~d--g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~v 293 (502)
... .+|.|-|+...+-+... ..--|.-..|.+..-+.+-|.||++.-
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei-------------------------------~~PGC~~iyP~~~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEI-------------------------------DTPGCWLIYPSGNRGFSMLCGDGSLLT 161 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEE-------------------------------EGTSEEEEEEEETTEEEEEETTSCEEE
T ss_pred ccCCCCeEEEEECCCCceeeee-------------------------------cCCCEEEEEecCCCceEEEecCCceEE
Confidence 444 35666666532111110 111122223444446888899999999
Q ss_pred EeCC-CCeeeEee----ccCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEee-----------cCCe
Q 010748 294 WDVA-AGKCNLTL----EHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAV-----------AADV 355 (502)
Q Consensus 294 wd~~-~~~~~~~~----~~h~~~v~-~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~-----------~~~v 355 (502)
..+. .|+...+. .....++. .-.+...+ ..++-.+..|.|+-.|+....... ..+.. ++.-
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 8887 55544222 11122222 22333444 345557899999999888765321 11111 2334
Q ss_pred eEEEeCCCCCCEEEEEe-------CCC--cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEE-eC
Q 010748 356 ESLAWDPHAEHSFVVSL-------EDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-ST 425 (502)
Q Consensus 356 ~~v~~~~~~~~~~~~~~-------~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~ 425 (502)
.-+++++..+.+++.-. .++ .|-+||+.+. +.+.++.. ..++.+|..+.+..-+|++. ..
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~ 310 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAG 310 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEEETT
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEEcCC
Confidence 55777765443333221 112 3667777775 66666653 24578999998765566554 45
Q ss_pred CCcEEEEECCCCCee
Q 010748 426 DKMVKLWDLSNNQPS 440 (502)
Q Consensus 426 dg~i~vwd~~~~~~~ 440 (502)
++.+.+||..+++..
T Consensus 311 ~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 311 DGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEETTT--EE
T ss_pred CCeEEEEeCcCCcEE
Confidence 789999999999843
No 350
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.74 E-value=0.013 Score=57.35 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=57.9
Q ss_pred ceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC----cEEEEEEc--------------
Q 010748 397 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG----AVFSVAFS-------------- 458 (502)
Q Consensus 397 ~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~~s-------------- 458 (502)
.+.+......+.+++.+|.+ .+.|+...=|.|.++|+..+... ...++... .+....-.
T Consensus 300 r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv--rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV--RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh--hhhccCccceEEEEEeecccccccccccccCCCC
Confidence 34455556778999999997 88888777799999999887532 22222111 11110000
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 459 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 459 pd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
....+|++-+-..|.|.||.++++..+...-
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 0123455667788999999999999886543
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.019 Score=57.11 Aligned_cols=174 Identities=11% Similarity=0.144 Sum_probs=88.4
Q ss_pred cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee-------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe-
Q 010748 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD- 338 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd- 338 (502)
+.|.++.|+.+ . .|+.-..||+++++|+. |+....+ .-....+....+...| -.++ ..++.+.+..
T Consensus 81 ~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvL--t~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG-IVVL--TGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCC-C-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC-EEEE--CCCCeEEEEeC
Confidence 78999999886 4 56677899999999986 3331111 1111222222333345 2333 3344444432
Q ss_pred cCCCCCccceEeecCCee---------E-EEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee
Q 010748 339 ARISTHSGFKWAVAADVE---------S-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~---------~-v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~ 408 (502)
...+.............. . ..++.+.. ..+....++.+.+.+-... ..+ ...+++.
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~------------~~i-~~~~~i~ 220 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSF------------KQI-DSDGPII 220 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccc------------ccc-cCCCCeE
Confidence 221111110001111011 0 12222222 3333334445554333211 011 1246899
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC
Q 010748 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
.+++||++ ++||.-..+|.+.+.+..-.+..+..... .......|.|+-+..
T Consensus 221 ~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 221 KIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA 272 (410)
T ss_pred EEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence 99999998 89999999999999876555533333322 234556677766543
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=5.9e-05 Score=65.47 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=84.4
Q ss_pred cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec
Q 010748 323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA 402 (502)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 402 (502)
..+..-+.+|.|+-++++..+........ +.+..-.+.....+++|+.+|.|++|...... ...-....
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~---~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s 99 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERF---IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCS 99 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhh---hhcceeecccCceEEeecccceEEEecCCccc--------hHHHhhhc
Confidence 34566677899998888865443222111 11111112223369999999999999887331 11111112
Q ss_pred cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC-CcEEEEEEcCCCCcEEEEE--eCCCcEEEEEC
Q 010748 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIG--GSKGKLEIWDT 479 (502)
Q Consensus 403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg--~~dg~i~vwd~ 479 (502)
....|.++.-.-....+.++++.+|.|+.|++.-.+. +-....|. .++..+..+..+.+ |+.+ |.+..++.|++
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~~-i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDEF-LKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCce-EEeeccccchhhhhcch
Confidence 2233333322222225899999999999999988773 33344444 44544555555553 6656 67777777777
Q ss_pred CCCc
Q 010748 480 LSDA 483 (502)
Q Consensus 480 ~~~~ 483 (502)
....
T Consensus 177 e~~~ 180 (238)
T KOG2444|consen 177 EKIK 180 (238)
T ss_pred hhhh
Confidence 5543
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.70 E-value=0.012 Score=58.58 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=93.6
Q ss_pred cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe---ecCCe-----eEEEeC
Q 010748 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADV-----ESLAWD 361 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v-----~~v~~~ 361 (502)
.|+||+. .|+.+.++.--.+.+.++.|+.+. .|++...||.+++||+.... ..... ....| ....+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccC
Confidence 4999985 577777775445899999998865 57778899999999997443 11111 11112 112222
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCC-CCC-CCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 362 PHAEHSFVVSLEDGTIKGFDIRTAKSD-PDS-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~d~~~~~~~-~~~-~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
. ++ +++-+.++.+.+..--..... ... ...........+........++.+. ...+....++.+.+.+-...+
T Consensus 137 ~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~- 211 (410)
T PF04841_consen 137 K-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFK- 211 (410)
T ss_pred C-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccccc-
Confidence 2 22 444445555554432221100 000 0000000011111110012233333 344444444555544332211
Q ss_pred eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 440 ~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
... ..+++..|++||++++ ||.-..+|.+.|....-.+.+
T Consensus 212 ----~i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 212 ----QID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred ----ccc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECccccee
Confidence 111 2468999999999995 888888999988876444443
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.70 E-value=0.013 Score=56.44 Aligned_cols=182 Identities=11% Similarity=0.070 Sum_probs=107.1
Q ss_pred CcEEEEEec----------CCcEEEEeCCCC----eeeEee--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748 279 RNILASASA----------DKQVKIWDVAAG----KCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 279 ~~~l~sgs~----------dg~v~vwd~~~~----~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~ 342 (502)
..+|+.|.. .|.|.++++... ..+..+ ....++|++++-. .+ . |+++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCc
Confidence 457777754 288999999884 122211 2357889999876 33 4 44333 589999999988
Q ss_pred CCccceE--eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE--eccCCCeeEEEEcCCCCC
Q 010748 343 THSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 343 ~~~~~~~--~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~ 418 (502)
+...... .....+.++.... +++++|..-..+.++..+.. ...+..+ ......++++.|-+++ .
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~--------~~~l~~va~d~~~~~v~~~~~l~d~-~ 185 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEE--------NNKLILVARDYQPRWVTAAEFLVDE-D 185 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETT--------TE-EEEEEEESS-BEEEEEEEE-SS-S
T ss_pred ccchhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEEEcc--------CCEEEEEEecCCCccEEEEEEecCC-c
Confidence 7222222 2334566666653 38999988888888755542 1222222 2345668888898776 6
Q ss_pred EEEEEeCCCcEEEEECCCC---------CeeEEEEecCCCCcEEEE---EEcCC--CCc-----EEEEEeCCCcEEEE
Q 010748 419 LLATGSTDKMVKLWDLSNN---------QPSCIASRNPKAGAVFSV---AFSED--SPF-----VLAIGGSKGKLEIW 477 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~---------~~~~~~~~~~~~~~v~~~---~~spd--~~~-----ll~sg~~dg~i~vw 477 (502)
.++.+..+|.+.++..... +......+. ....|+++ ++.|. +.. .++.++.+|.|.+.
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999999999999987631 222223332 23557777 55552 221 36677889988844
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0026 Score=62.02 Aligned_cols=145 Identities=18% Similarity=0.258 Sum_probs=101.0
Q ss_pred cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCC------EEEEEeCCCcEEEEECCCCCCCCCCCCCcc
Q 010748 323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQS 396 (502)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~------~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 396 (502)
-+|.++..-..|+-.|+..++.+. .|.....|+-+.+.|+... .-++|-.+..|.-||.|-... ..
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVe-EWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~k 418 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVE-EWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NK 418 (644)
T ss_pred eEeeCCCCcCcceeeecccceeee-EeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------ce
Confidence 345556666778888888887665 6777777888888886431 345677889999999995421 12
Q ss_pred ceEEeccC----CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 010748 397 SFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472 (502)
Q Consensus 397 ~~~~~~h~----~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg 472 (502)
+....+|. ....|++-.. ..++|+||.+|.||+||--..+ ....+++...+|..+..+.+|.++|+|+ +.
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc--~t 492 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRR--AKTALPGLGDAIKHVDVTADGKWILATC--KT 492 (644)
T ss_pred eeeeeccccccccccceeeecC--CceEEEeecCCcEEeehhhhhh--hhhcccccCCceeeEEeeccCcEEEEec--cc
Confidence 22223332 2345555444 4699999999999999974333 3455677788999999999999877654 55
Q ss_pred cEEEEECCC
Q 010748 473 KLEIWDTLS 481 (502)
Q Consensus 473 ~i~vwd~~~ 481 (502)
.+.+-++.-
T Consensus 493 yLlLi~t~~ 501 (644)
T KOG2395|consen 493 YLLLIDTLI 501 (644)
T ss_pred EEEEEEEec
Confidence 777777643
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.65 E-value=0.011 Score=59.05 Aligned_cols=216 Identities=18% Similarity=0.218 Sum_probs=106.8
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010748 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 221 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I 221 (502)
...+.++|+|+++++++ ++ +..+|..... .... .+......| .+ .+.+|+-...+.|
T Consensus 35 p~~ls~npngr~v~V~g-~g-----eY~iyt~~~~-----r~k~----~G~g~~~vw-------~~-~n~yAv~~~~~~I 91 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG-DG-----EYEIYTALAW-----RNKA----FGSGLSFVW-------SS-RNRYAVLESSSTI 91 (443)
T ss_dssp -SEEEE-TTSSEEEEEE-TT-----EEEEEETTTT-----EEEE----EEE-SEEEE--------T-SSEEEEE-TTS-E
T ss_pred CeeEEECCCCCEEEEEc-CC-----EEEEEEccCC-----cccc----cCceeEEEE-------ec-CccEEEEECCCeE
Confidence 57899999999999943 44 4444442221 1111 111245566 34 4446666668899
Q ss_pred EEe-eCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe
Q 010748 222 EIW-DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300 (502)
Q Consensus 222 ~iw-dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~ 300 (502)
.|+ ++.... . + .... ...+..|-. +.+|+..+. +.|.+||+.+++
T Consensus 92 ~I~kn~~~~~-~-----------------------k--~i~~---~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~ 137 (443)
T PF04053_consen 92 KIYKNFKNEV-V-----------------------K--SIKL---PFSVEKIFG----GNLLGVKSS-DFICFYDWETGK 137 (443)
T ss_dssp EEEETTEE-T-T---------------------------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--
T ss_pred EEEEcCcccc-c-----------------------e--EEcC---CcccceEEc----CcEEEEECC-CCEEEEEhhHcc
Confidence 996 332100 0 0 0011 112333322 346655554 489999999999
Q ss_pred eeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-----------CCccceEeecCCeeEEEeCCCCCCEEE
Q 010748 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-----------THSGFKWAVAADVESLAWDPHAEHSFV 369 (502)
Q Consensus 301 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~~~~ 369 (502)
.++.+... +|..+.|++++ .+++..+. ..+.+++.... ............|.+.+|..+ .|+
T Consensus 138 ~i~~i~v~--~vk~V~Ws~~g-~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fi 210 (443)
T PF04053_consen 138 LIRRIDVS--AVKYVIWSDDG-ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFI 210 (443)
T ss_dssp EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEE
T ss_pred eeeEEecC--CCcEEEEECCC-CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEE
Confidence 99999733 48999999998 66666654 46666664432 011222233678999999864 455
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435 (502)
Q Consensus 370 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~ 435 (502)
-.+.. .|+. +..+ ....+..-..++.=+.+.|.. +.++....++.|..+.+.
T Consensus 211 YtT~~-~lkY--l~~G----------e~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 211 YTTSN-HLKY--LVNG----------ETGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EE-TT-EEEE--EETT----------EEEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--
T ss_pred EEcCC-eEEE--EEcC----------CcceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEEC
Confidence 44444 6666 3333 223333334566666777754 677777778777777654
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.65 E-value=0.035 Score=55.65 Aligned_cols=241 Identities=14% Similarity=0.159 Sum_probs=126.9
Q ss_pred CCCCCEEEEe-cCC----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCc
Q 010748 206 REKGNFMAVG-SME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 280 (502)
Q Consensus 206 s~~~~~la~g-~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 280 (502)
||+|++||.+ +.. ..|+|+|+.++..+... + ....-..+.|.+++..
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--------------------------i--~~~~~~~~~W~~d~~~ 183 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--------------------------I--ENPKFSSVSWSDDGKG 183 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--------------------------E--EEEESEEEEECTTSSE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--------------------------c--cccccceEEEeCCCCE
Confidence 8999999875 233 35999999875322110 0 0111223899999665
Q ss_pred EEEEEecC----------CcEEEEeCCCCee--eEeeccCCCC--eEEEEEcCCCCcEEEEEeCCC---cEEEEecCCC-
Q 010748 281 ILASASAD----------KQVKIWDVAAGKC--NLTLEHHTDK--VQAVAWNHHSPQILLSGSFDR---SVVMKDARIS- 342 (502)
Q Consensus 281 ~l~sgs~d----------g~v~vwd~~~~~~--~~~~~~h~~~--v~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~- 342 (502)
++++.... ..|+.|.+.+... ...+...... ...+..++++..+++...... .+.+.++...
T Consensus 184 ~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 184 FFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 66665333 2378888877643 2344333322 567889999844444444433 4777777764
Q ss_pred --C-CccceEeecCCeeE-EEeCCCCCCEEEEEe---CCCcEEEEECCCCCCCCCCCCCccceEEeccCC--CeeEEEEc
Q 010748 343 --T-HSGFKWAVAADVES-LAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYN 413 (502)
Q Consensus 343 --~-~~~~~~~~~~~v~~-v~~~~~~~~~~~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s 413 (502)
. ...........+.. +... +..+++... ..+.|...++..... ......+..|.. .+..+...
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~------~~~~~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP------AEWWTVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG------GGEEEEEE--SSSEEEEEEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc------ccceeEEcCCCCceeEEEEEEE
Confidence 1 22222222333333 3333 333444332 345677777776521 011224555555 35555544
Q ss_pred CCCCCEEEEEeCCCc--EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCccc
Q 010748 414 PLVPNLLATGSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDAGI 485 (502)
Q Consensus 414 p~~~~~l~t~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d---g~i~vwd~~~~~~~ 485 (502)
+..+++....++. |+++++..+......... ..+.|..+...+++..++++.++- +++..||+.+++..
T Consensus 336 --~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 336 --KDYLVLSYRENGSSRLRVYDLDDGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp --TTEEEEEEEETTEEEEEEEETT-TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred --CCEEEEEEEECCccEEEEEECCCCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 3356666665554 888999833322233333 346677777777766555544432 57888999888753
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.64 E-value=0.016 Score=52.95 Aligned_cols=202 Identities=15% Similarity=0.273 Sum_probs=106.3
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEecC
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~la~g~~ 217 (502)
++++.++|.|+.+.|++...+.. .|+.++... .+... +.+..+ +=.+++ -.++.++++--.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~----~i~els~~G----~vlr~--i~l~g~~D~EgI~y-------~g~~~~vl~~Er 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPG----EIYELSLDG----KVLRR--IPLDGFGDYEGITY-------LGNGRYVLSEER 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTT----EEEEEETT------EEEE--EE-SS-SSEEEEEE--------STTEEEEEETT
T ss_pred CCccccEEcCCCCeEEEEECCCC----EEEEEcCCC----CEEEE--EeCCCCCCceeEEE-------ECCCEEEEEEcC
Confidence 45999999999887777765542 677777653 22221 112221 123444 245666666666
Q ss_pred CCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccc-cccCcccceeeEEeccCCCcEEEEEecCCcEEEEeC
Q 010748 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKY-KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~ 296 (502)
++.+.++.+.......... ....... ....+...+-.|+|.+.+. .|+.+-...-..||.+
T Consensus 85 ~~~L~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~ 146 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRA-----------------DVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEV 146 (248)
T ss_dssp TTEEEEEEE----TT--EE-----------------EEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEE
T ss_pred CCcEEEEEEeccccccchh-----------------hceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEE
Confidence 8999999885322111100 0001111 1124566799999999844 5556666666667766
Q ss_pred CC---CeeeE--e------eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec----------CCe
Q 010748 297 AA---GKCNL--T------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----------ADV 355 (502)
Q Consensus 297 ~~---~~~~~--~------~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~v 355 (502)
.. ...+. . .......+.++.++|..+++++.+..+..|..+|.. ++... ..... .+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~-~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 147 NGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVS-SLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp ESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEE-EEE-STTGGG-SS---SE
T ss_pred ccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEE-EEEeCCcccCcccccCCc
Confidence 53 11111 1 112345688999999988889999999999999943 33322 22211 358
Q ss_pred eEEEeCCCCCCEEEEEeCCCcEEEE
Q 010748 356 ESLAWDPHAEHSFVVSLEDGTIKGF 380 (502)
Q Consensus 356 ~~v~~~~~~~~~~~~~~~dg~v~i~ 380 (502)
..|+|.++|. +++.++-+..++|
T Consensus 225 EGIa~d~~G~--LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGN--LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT----EEEEETTTEEEEE
T ss_pred cEEEECCCCC--EEEEcCCceEEEe
Confidence 8999999763 6666676665554
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00027 Score=69.98 Aligned_cols=94 Identities=16% Similarity=0.320 Sum_probs=80.5
Q ss_pred ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 344 (502)
...|.-+.|+|. ..++|.+..+|.|.+..++ .+.+.++.-|...++ +++|.|+| ++|++|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence 356888999999 7799999999999999988 777888887787887 99999998 9999999999999999998876
Q ss_pred ccc-eEeecCCeeEEEeCC
Q 010748 345 SGF-KWAVAADVESLAWDP 362 (502)
Q Consensus 345 ~~~-~~~~~~~v~~v~~~~ 362 (502)
... .......|.++-|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 542 345667788888875
No 360
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.62 E-value=0.075 Score=56.09 Aligned_cols=300 Identities=14% Similarity=0.161 Sum_probs=159.9
Q ss_pred CCccccccccccCCC---c---eEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010748 137 EDSEDLEDMTINPND---A---VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~---~---~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 210 (502)
+-+.+|.|+.|+|.| + ++++|...+. ..+-.+ .... .+..|.....+.+|-.+-...+ -.+..
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~---~~~l~~-~pd~---~~~~~~~l~~~~iPRSIl~~~~----e~d~~ 596 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDI---SMILTF-LPDL---ILITHEQLSGEIIPRSILLTTF----EGDIH 596 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecce---EEEEEE-CCCc---ceeeeeccCCCccchheeeEEe----eccce
Confidence 346789999999863 2 7888888762 122222 2222 5556666777777766544322 34588
Q ss_pred EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecCCc
Q 010748 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~dg~ 290 (502)
+|.++..||.+.-|.++........ ..+.. -.+.++.--.|+...++.++++| |.-
T Consensus 597 yLlvalgdG~l~~fv~d~~tg~lsd---------------------~Kk~~--lGt~P~~Lr~f~sk~~t~vfa~s-drP 652 (1096)
T KOG1897|consen 597 YLLVALGDGALLYFVLDINTGQLSD---------------------RKKVT--LGTQPISLRTFSSKSRTAVFALS-DRP 652 (1096)
T ss_pred EEEEEcCCceEEEEEEEcccceEcc---------------------ccccc--cCCCCcEEEEEeeCCceEEEEeC-CCC
Confidence 9999999999998887654332210 00001 12345555566665555555544 445
Q ss_pred EEEEeCCCCeeeEe-eccCCCCeEE-EEEcC-CCCcEEEEEeCCCcEEEEecCCCCC-ccceEeecCCeeEEEeCCCCCC
Q 010748 291 VKIWDVAAGKCNLT-LEHHTDKVQA-VAWNH-HSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 291 v~vwd~~~~~~~~~-~~~h~~~v~~-l~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~ 366 (502)
..+|.- +++.+.+ +.. ..+.. +.|+. ..+..|+++ ..+.+++.-+..-+. .............+++.+.. .
T Consensus 653 ~viY~~-n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s-l 727 (1096)
T KOG1897|consen 653 TVIYSS-NGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS-L 727 (1096)
T ss_pred EEEEec-CCcEEEeccch--HHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccc-e
Confidence 555553 3333222 110 11111 12322 222334444 345666665543222 12234455667777887732 2
Q ss_pred EEEEEeCC-----------C---cEEEEECCCCCCCCCCCCCccceEEeccC-------CCeeEEEEcCCCCCEEEEEeC
Q 010748 367 SFVVSLED-----------G---TIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 367 ~~~~~~~d-----------g---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~l~t~s~ 425 (502)
++.+.+.- . .++++|-.+. ..+..|. -.|.++.|..+...+++.|+.
T Consensus 728 ~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf------------~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 728 TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF------------EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred EEEEEecccccchhhcCCcceEEEEEEecCCce------------eEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence 34433321 1 2445554432 2333332 235556687774477777753
Q ss_pred ----------CCcEEEEECCC-CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010748 426 ----------DKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 426 ----------dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
.|.|.||.+.. ++...+... .-.+.+.++..- +|+ +|| +-+..|++|+..+.+.++....++.
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f-ngk-llA--~In~~vrLye~t~~~eLr~e~~~~~ 869 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF-NGK-LLA--GINQSVRLYEWTTERELRIECNISN 869 (1096)
T ss_pred eeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh-CCe-EEE--ecCcEEEEEEccccceehhhhcccC
Confidence 47788888777 333333332 234566666543 344 455 4556899999999877765555443
No 361
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.62 E-value=0.071 Score=51.27 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=89.7
Q ss_pred cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeC---CC-cEEEEecCCCCCccceE-ee--cCCeeEEEeCC
Q 010748 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DR-SVVMKDARISTHSGFKW-AV--AADVESLAWDP 362 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg-~i~iwd~~~~~~~~~~~-~~--~~~v~~v~~~~ 362 (502)
.|.--|+.+|+....+. -+..+..+.|+|..+.+|+-|-. +. .-+||-+++........ .+ ...+..=-|.|
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 45566777776544444 46678889999999776666533 23 24677666433221111 11 12234446899
Q ss_pred CCCCEEEEEeC----CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC-----------
Q 010748 363 HAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----------- 427 (502)
Q Consensus 363 ~~~~~~~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----------- 427 (502)
+|..+++.+.. +..|.-+|+.+.. ... +. .......+-.++++ .+++-=+.|.
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~---------~~~-~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGE---------RRR-LM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT-----------EEE-EE-EE-SEEEEEE-TTS-SEEEEEE--------------
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCC---------ceE-EE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccce
Confidence 99877776542 2346677777652 111 11 11234455566776 6665544432
Q ss_pred -----cEEEEECCCCCeeEEEEe-------cCCCC-cEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 428 -----MVKLWDLSNNQPSCIASR-------NPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 428 -----~i~vwd~~~~~~~~~~~~-------~~~~~-~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
.|+++++..++...+... .++.. .=....|+||++++|.++...|...||=+.
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 466788877664333222 11111 124678999999999999999988887553
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.021 Score=56.37 Aligned_cols=208 Identities=18% Similarity=0.168 Sum_probs=135.0
Q ss_pred ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 347 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 347 (502)
....+...+.+....++-.....+...+............-...-..+..++.+.+.+++...++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~- 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG- 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-
Confidence 4556677777544444444444566666552222222221114456788888886677777778999999977665544
Q ss_pred eEeecCCeeEEEeCCCCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC
Q 010748 348 KWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 348 ~~~~~~~v~~v~~~~~~~~~~~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
..........++++|++..+.++-. .++.+.+.|..+. ........-..+ ..++++|++...+++-..
T Consensus 111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---------eEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence 3334447788999998875555555 3688999888876 444444443344 899999999556666668
Q ss_pred CCcEEEEECCCCCeeEEEE---ecCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCccccc
Q 010748 426 DKMVKLWDLSNNQPSCIAS---RNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAGISN 487 (502)
Q Consensus 426 dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vwd~~~~~~~~~ 487 (502)
++.|.+.|........ .. .......-..+.++|++.++.++-..+ +.+.+.|..++.....
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 8999999977765221 11 111223346789999999766655554 6899999988777655
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.61 E-value=0.025 Score=55.33 Aligned_cols=200 Identities=17% Similarity=0.227 Sum_probs=105.4
Q ss_pred ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee-cc-------C---------CCCeEEEEEcCCCCcEEEEE
Q 010748 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EH-------H---------TDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~-~~-------h---------~~~v~~l~~~~~~~~~l~s~ 328 (502)
...+....|+|+ ++.+|-.. ++.|.++++.++...+.- .+ - -+.-..+.|+|++ +.|+..
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEE
Confidence 567889999999 45666554 578999998877543321 12 0 1223578899999 555544
Q ss_pred eC-CCc-----------------------------------EEEEecCCCCCccceEe-----ecCCeeEEEeCCCCCCE
Q 010748 329 SF-DRS-----------------------------------VVMKDARISTHSGFKWA-----VAADVESLAWDPHAEHS 367 (502)
Q Consensus 329 s~-dg~-----------------------------------i~iwd~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~~ 367 (502)
.. +.. +.++++.+++....... ...-+..+.|.+++..+
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 33 322 23344444332211111 12236788898876523
Q ss_pred EEE-EeCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCe---eEEEEc-CCCCCEEEEEeCCCcEE--EEECCCC
Q 010748 368 FVV-SLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYN-PLVPNLLATGSTDKMVK--LWDLSNN 437 (502)
Q Consensus 368 ~~~-~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~s-p~~~~~l~t~s~dg~i~--vwd~~~~ 437 (502)
++. ...+. .+.++|..++.. ..+. .....+.| ..+.|. +++..+|.....+|.-+ +++...+
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~-------~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGET-------RVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTC-------EEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred EEEEcccCCCEEEEEEEECCCCce-------eEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence 332 23332 366667766521 2222 22233333 345554 66667777777887644 4555555
Q ss_pred CeeEEEEecCCCCcEEE-EEEcCCCCcEEEEEeCCC--cEEEEEC
Q 010748 438 QPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKG--KLEIWDT 479 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~-~~~spd~~~ll~sg~~dg--~i~vwd~ 479 (502)
. ...+....-.|.. +.|++++..++.++..++ .-.||.+
T Consensus 271 ~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 271 K---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp E---EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred c---eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 4 3344444555744 778898887777776633 3444443
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.60 E-value=0.012 Score=56.68 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=90.4
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCe-eeEeec-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~-~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~ 341 (502)
...++|++|+-.. + .|+.|. .+.|.+|++...+ ....-. .....++++... + +++++|..-..+.++..+.
T Consensus 86 ~~~g~V~ai~~~~--~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 86 EVKGPVTAICSFN--G-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EESS-EEEEEEET--T-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEET
T ss_pred eecCcceEhhhhC--C-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEc
Confidence 3568899998763 3 344443 3789999998777 333222 123366777665 3 6899999999999886654
Q ss_pred CCC-ccceEe--ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec-cCCCeeEE---EEcC
Q 010748 342 STH-SGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTI---SYNP 414 (502)
Q Consensus 342 ~~~-~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l---~~sp 414 (502)
... ...... ....++++.+-+++. .++++..+|.+.++...................... ....|+++ ++.|
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence 222 111111 244578888886664 899999999999998864211111100011112222 23557777 5555
Q ss_pred --CCCC-----EEEEEeCCCcEEEE
Q 010748 415 --LVPN-----LLATGSTDKMVKLW 432 (502)
Q Consensus 415 --~~~~-----~l~t~s~dg~i~vw 432 (502)
.+.. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 2212 47778888888743
No 365
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.60 E-value=0.0045 Score=62.88 Aligned_cols=159 Identities=10% Similarity=0.034 Sum_probs=97.9
Q ss_pred eccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe------------------------
Q 010748 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------------------------ 329 (502)
Q Consensus 274 ~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s------------------------ 329 (502)
+.|+|..+..+.-..+.+.+.|..+.+...++.- .+....+.++|++ .++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3445332222333345667777777666655542 2233455666666 3443333
Q ss_pred ----------------CCCcEEEEecCC----CCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCC
Q 010748 330 ----------------FDRSVVMKDARI----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389 (502)
Q Consensus 330 ----------------~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~ 389 (502)
.++.|.+.|.++ ................+.++|++..+++++..+..|.++|+.+.....
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 134588888877 333444566778889999999999888888889999999998863210
Q ss_pred CC--CC-CccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010748 390 DS--TS-QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 390 ~~--~~-~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
.. .. ...+...... ..-...+|.++| +...|...|..|..|++..
T Consensus 358 ~~~~~~~~~vvaevevG-lGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELG-LGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccC-CCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 00 00 0112222222 233456788887 7888888899999999876
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.11 Score=49.31 Aligned_cols=227 Identities=10% Similarity=0.019 Sum_probs=122.4
Q ss_pred CCCCC-EEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEE
Q 010748 206 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 206 s~~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
.++.+ ++.+--..+.|.-|+..++... .+ .+...+.++.....++ .|++
T Consensus 33 ~~~~~~L~w~DI~~~~i~r~~~~~g~~~----------------------------~~-~~p~~~~~~~~~d~~g-~Lv~ 82 (307)
T COG3386 33 DPDRGALLWVDILGGRIHRLDPETGKKR----------------------------VF-PSPGGFSSGALIDAGG-RLIA 82 (307)
T ss_pred cCCCCEEEEEeCCCCeEEEecCCcCceE----------------------------EE-ECCCCcccceeecCCC-eEEE
Confidence 45544 5566666788888887632110 00 1233345555444434 4544
Q ss_pred EecCCcEEEEeCCCCeeeEeec----c-CCCCeEEEEEcCCCCcEEEEEeC------C---CcEEEEecC-CCCCccceE
Q 010748 285 ASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNHHSPQILLSGSF------D---RSVVMKDAR-ISTHSGFKW 349 (502)
Q Consensus 285 gs~dg~v~vwd~~~~~~~~~~~----~-h~~~v~~l~~~~~~~~~l~s~s~------d---g~i~iwd~~-~~~~~~~~~ 349 (502)
+.. -+.++++.++..+..+. + -....+.+...|+| .+.++... . ..-.+|-+. .+.......
T Consensus 83 ~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~ 159 (307)
T COG3386 83 CEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD 159 (307)
T ss_pred Ecc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec
Confidence 433 36777776665533321 1 11345567788888 44333222 0 111344443 223222222
Q ss_pred eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCC-c
Q 010748 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-M 428 (502)
Q Consensus 350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg-~ 428 (502)
.+-...+.++|+|++..++++=+..+.|+-|++......... ......+....+..-.++...+| ++-+++...| .
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~--~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~ 236 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG--RRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGR 236 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC--cceEEEccCCCCCCCceEEeCCC-CEEEecccCCce
Confidence 334456789999998866666666788988888631110000 11122233345666777788777 5554444444 8
Q ss_pred EEEEECCCCCeeEEEEecCCCCcEEEEEEc-CCCCcEEEEEeCC
Q 010748 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK 471 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~ll~sg~~d 471 (502)
|.+|+.. +++ +.........+++++|- |+.+.|++|+...
T Consensus 237 v~~~~pd-G~l--~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 237 VVRFNPD-GKL--LGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEEECCC-CcE--EEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 9999988 664 33333344667888884 5566567766655
No 367
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.00032 Score=61.06 Aligned_cols=107 Identities=12% Similarity=0.091 Sum_probs=71.0
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
-+.-|++|+.+|.|.+|+.+....+... ...-...|.++--+-+.+.+.++++.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--------------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--------------------------VCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--------------------------hhcccccceeccccccccceeEEecc
Confidence 3778999999999999998732221111 11122334443333333458999999
Q ss_pred CCcEEEEeCCCCeeeEeeccCC-CCeEEEEEcCCCCcEEEEE--eCCCcEEEEecCC
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSG--SFDRSVVMKDARI 341 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~--s~dg~i~iwd~~~ 341 (502)
||.|+.|++.-++.+.....|+ .++..+.....+ .++..+ |.+..++.|++..
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 9999999999999888887787 555555555544 556666 6677777777654
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0048 Score=65.10 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.+-++++|+..|.+-..|+... +.+ .+.-..-..+|++++|+.+ +.+++.|-.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~------------------------~~~ne~v~~~Vtsvafn~d-g~~l~~G~~ 150 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGP------------------------LHQNERVQGPVTSVAFNQD-GSLLLAGLG 150 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cch------------------------hhcCCccCCcceeeEecCC-CceeccccC
Confidence 3667899999999988887532 111 0111134579999999999 569999999
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEE---EEcCCCCcEEEEEeCCCcEEEEec
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAV---AWNHHSPQILLSGSFDRSVVMKDA 339 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l---~~~~~~~~~l~s~s~dg~i~iwd~ 339 (502)
+|.|.+||+.+++..+.+..|..+++++ .|..++ ..++++...|. +|.+
T Consensus 151 ~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 151 DGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 9999999999999998887776665554 444555 57888887776 5554
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.36 E-value=0.00064 Score=41.31 Aligned_cols=39 Identities=33% Similarity=0.382 Sum_probs=34.4
Q ss_pred CeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 010748 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd 338 (502)
+++...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 45667777889999999999988 8999999999999996
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0069 Score=59.16 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=97.6
Q ss_pred EEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCC------cEEEEEeCCCcEEEEecCCCCCccceE-----
Q 010748 281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFKW----- 349 (502)
Q Consensus 281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~------~~l~s~s~dg~i~iwd~~~~~~~~~~~----- 349 (502)
+|.++..-..|+-.|++.|+.+.....|.. |.-+.+.|+.. ..-+.|-.+..|.-||.|-...-...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455566667789999999999999987766 77777777641 123456778899999999654421111
Q ss_pred -eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010748 350 -AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 350 -~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
.......|.+-..+ .++++|+.+|.|++||-- + ......+++-..+|..|..+.+| .+|++.+ +..
T Consensus 427 y~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri-~--------~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty 493 (644)
T KOG2395|consen 427 YSTKNNFSCFATTES--GYIVVGSLKGDIRLYDRI-G--------RRAKTALPGLGDAIKHVDVTADG-KWILATC-KTY 493 (644)
T ss_pred cccccccceeeecCC--ceEEEeecCCcEEeehhh-h--------hhhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence 22334556555543 479999999999999973 3 24556677888999999999998 4444333 456
Q ss_pred EEEEECC
Q 010748 429 VKLWDLS 435 (502)
Q Consensus 429 i~vwd~~ 435 (502)
+.+-++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 6666653
No 371
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.25 E-value=0.024 Score=58.78 Aligned_cols=194 Identities=16% Similarity=0.224 Sum_probs=102.0
Q ss_pred eeeEEeccCCCcEEEEEecC------CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCc-----EE
Q 010748 269 VLGLAWNKEFRNILASASAD------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----VV 335 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~d------g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~-----i~ 335 (502)
-.+++...+ .+.++|+.+ .++..||..+.+-.. .+....... ....-++.+.++|+.||. +-
T Consensus 325 ~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~---~v~~l~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 325 RVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF---GVAVLDGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred cccEEEECC--EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc---eeEEECCEEEEEeccccccccccEE
Confidence 444555543 588889888 357788887765322 222111111 111122378889998874 56
Q ss_pred EEecCCCCCccc--eEeecCCeeEEEeCCCCCCEEEEEeCCC------cEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748 336 MKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 336 iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~~~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
.||.++.+-... ..........+.+ ++.+.++|+.++ ++..||..+.. ...+..+.......
T Consensus 400 ~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~ 469 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGF 469 (571)
T ss_pred EecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccc
Confidence 677665432110 1111111222222 344677776444 47788887652 12222222222222
Q ss_pred eEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-----cEEEE
Q 010748 408 CTISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIW 477 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-----~i~vw 477 (502)
....++ ..+.+.||.|+. |..||..+.+...+.........+..+.+ ++. +.++||.+| +|..|
T Consensus 470 g~a~~~---~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~y 543 (571)
T KOG4441|consen 470 GVAVLN---GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECY 543 (571)
T ss_pred eEEEEC---CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEc
Confidence 222222 377888887763 77899998886555433333333332332 233 788899886 46777
Q ss_pred ECCCCc
Q 010748 478 DTLSDA 483 (502)
Q Consensus 478 d~~~~~ 483 (502)
|..+++
T Consensus 544 dp~~d~ 549 (571)
T KOG4441|consen 544 DPETDT 549 (571)
T ss_pred CCCCCc
Confidence 766543
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.16 E-value=0.026 Score=58.66 Aligned_cols=186 Identities=5% Similarity=0.034 Sum_probs=92.7
Q ss_pred CcEEEEEecC------CcEEEEeCCCCeee--EeeccCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEecCCCCCc
Q 010748 279 RNILASASAD------KQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS 345 (502)
Q Consensus 279 ~~~l~sgs~d------g~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~ 345 (502)
+.+++.|+.+ ..+..||+.+..-. ..+.........+.. ++ .+.+.|+.++ ++..||..+..-.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DD-TIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CC-EEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 4577777753 34778888776432 122111111222222 34 6777787764 4778887754211
Q ss_pred c--ceEeecCCeeEEEeCCCCCCEEEEEeCCC-----------------------cEEEEECCCCCCCCCCCCCccceEE
Q 010748 346 G--FKWAVAADVESLAWDPHAEHSFVVSLEDG-----------------------TIKGFDIRTAKSDPDSTSQQSSFTL 400 (502)
Q Consensus 346 ~--~~~~~~~~v~~v~~~~~~~~~~~~~~~dg-----------------------~v~i~d~~~~~~~~~~~~~~~~~~~ 400 (502)
. ...........+.. ++.++++|+.++ .+..||..+.. ...+..+
T Consensus 381 ~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m 450 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNF 450 (557)
T ss_pred ECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-------EeecCCC
Confidence 0 00000111112222 234666666542 46777776541 1111111
Q ss_pred eccCCCeeEEEEcCCCCCEEEEEeCC------CcEEEEECCC-CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-
Q 010748 401 HAHDKAVCTISYNPLVPNLLATGSTD------KMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG- 472 (502)
Q Consensus 401 ~~h~~~v~~l~~sp~~~~~l~t~s~d------g~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg- 472 (502)
.........+.+. + .+.+.|+.+ ..+..||..+ .+...+............+.+ ++. +.++||.+|
T Consensus 451 ~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~ 524 (557)
T PHA02713 451 WTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-IMMLHCYESY 524 (557)
T ss_pred CcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-EEEEeeecce
Confidence 1111111122222 3 666667654 2467899988 665555444433333333333 444 789999888
Q ss_pred -cEEEEECCCCc
Q 010748 473 -KLEIWDTLSDA 483 (502)
Q Consensus 473 -~i~vwd~~~~~ 483 (502)
.+..||..+++
T Consensus 525 ~~~e~yd~~~~~ 536 (557)
T PHA02713 525 MLQDTFNVYTYE 536 (557)
T ss_pred eehhhcCccccc
Confidence 77888887654
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.21 Score=45.80 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=108.7
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~ 342 (502)
+-...|.+|.|+|+ .+.|++......-.||=...|+.++++.- .-...-.+.|...+ ++.++--.++.+.++.+...
T Consensus 83 g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence 44455999999999 45666666667777776678998888742 12334567787777 77777777888888877654
Q ss_pred CCccc----eE-----ee-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-------CC
Q 010748 343 THSGF----KW-----AV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DK 405 (502)
Q Consensus 343 ~~~~~----~~-----~~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-------~~ 405 (502)
..... .. .. ......++|.|... .|++.-+-.-+.||.+...... ..+.....+ -.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~------l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSS------LSVHASLDPTADRDLFVL 233 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcc------cccccccCcccccceEee
Confidence 32110 11 11 45688999999766 5666767777777776643210 011111111 23
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
.|+++.|++..+.+|+-+..++.+.-.|....
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 57889999877678888888888888887654
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0032 Score=62.66 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=67.9
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE-EEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 404 ~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
...+..+.|+|.- .++|++..+|.|-+..+. .+ .+.+++-+.-.++ +++|.|||. +||.|-.||+|++-|+.++
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~q--Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQ--RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEec-cc--eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCC
Confidence 4567889999987 899999999999999888 33 4777775666666 999999999 7999999999999999999
Q ss_pred cccccc
Q 010748 483 AGISNR 488 (502)
Q Consensus 483 ~~~~~~ 488 (502)
..+...
T Consensus 95 ~~l~~~ 100 (665)
T KOG4640|consen 95 GRLVSF 100 (665)
T ss_pred Cceecc
Confidence 888663
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.04 E-value=0.0016 Score=39.41 Aligned_cols=38 Identities=34% Similarity=0.575 Sum_probs=33.3
Q ss_pred ccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 4556677889999999999987 8999999999999996
No 376
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.04 E-value=0.043 Score=42.59 Aligned_cols=103 Identities=24% Similarity=0.278 Sum_probs=68.6
Q ss_pred eeEEE---eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010748 355 VESLA---WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 355 v~~v~---~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
|++++ |..++.+.|++|+.|..|++|+-. ..+..+.. ...|++++-... ..++.+..+|+|-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----------e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----------EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----------cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEE
Confidence 44454 445666889999999999999865 34555553 455777766653 67999999999999
Q ss_pred EECCCCCeeEEEEecCCCCcEEEEEEc---CCCCcEEEEEeCCCcEEE
Q 010748 432 WDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~ll~sg~~dg~i~v 476 (502)
|+-... +...... ..++++.+. .+|..-|++|-++|.|-+
T Consensus 68 Y~~~~R----lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 68 YDRSQR----LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EeCcce----eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 986432 3333322 235555543 344435888989998753
No 377
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.97 E-value=0.11 Score=53.23 Aligned_cols=191 Identities=15% Similarity=0.201 Sum_probs=109.3
Q ss_pred EEEEEecCCcEEEEeCCCCeeeEeeccCCC------CeE--EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeec
Q 010748 281 ILASASADKQVKIWDVAAGKCNLTLEHHTD------KVQ--AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~------~v~--~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 352 (502)
.++.++.++.|.-.|..+|+.+.++..... .+. .+... ++ ..++.++.++.|..+|.++++..-. ....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~-~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWK-FGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeee-ecCC
Confidence 677788889999999999988877653322 010 11111 21 4677888999999999998765321 1111
Q ss_pred CC------ee-EEEeCCCCCCEEEEEe---------CCCcEEEEECCCCCCCCCCCCCccceEEeccCC-----------
Q 010748 353 AD------VE-SLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK----------- 405 (502)
Q Consensus 353 ~~------v~-~v~~~~~~~~~~~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~----------- 405 (502)
.. +. +..+. + .++++++ .+|.|..+|..++ +.++.......
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG---------~~~W~~~~~~~~~~~~~~~~~~ 207 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETG---------KLLWRFYTTEPDPNAFPTWGPD 207 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCC---------ceeeEeeccCCCcCCCCCCCCC
Confidence 11 11 11111 1 2455554 3678999999887 44444432110
Q ss_pred ---------Ce-eEEEEcCCCCCEEEEEeCCC------------------cEEEEECCCCCeeEEEEecCCCCc----EE
Q 010748 406 ---------AV-CTISYNPLVPNLLATGSTDK------------------MVKLWDLSNNQPSCIASRNPKAGA----VF 453 (502)
Q Consensus 406 ---------~v-~~l~~sp~~~~~l~t~s~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~----v~ 453 (502)
.+ .+.++.+.+ .+++.++.++ .|.-+|+.+++..=.+....+... ..
T Consensus 208 ~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s 286 (488)
T cd00216 208 RQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN 286 (488)
T ss_pred cceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC
Confidence 01 123444444 6677776665 688899999884322222222110 00
Q ss_pred EEEEc----CCC--CcEEEEEeCCCcEEEEECCCCccccc
Q 010748 454 SVAFS----EDS--PFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 454 ~~~~s----pd~--~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
...+. -++ ..++++++.+|.+...|..+++.+-+
T Consensus 287 ~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 287 QPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 00111 122 12477788899999999999998754
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.91 E-value=0.14 Score=49.75 Aligned_cols=185 Identities=14% Similarity=0.084 Sum_probs=84.1
Q ss_pred cCCCcEEEEEec------CCcEEEEeCCCCeeeEeeccC---CCCeEEEEEcCCCCcEEEEEeC----------------
Q 010748 276 KEFRNILASASA------DKQVKIWDVAAGKCNLTLEHH---TDKVQAVAWNHHSPQILLSGSF---------------- 330 (502)
Q Consensus 276 ~~~~~~l~sgs~------dg~v~vwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~s~---------------- 330 (502)
|+ +.+++|+-. -|-+.+.|-++.......... ...-..+.|.|.. ++++|+..
T Consensus 139 p~-G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 139 PD-GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHH
T ss_pred CC-ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhh
Confidence 45 447776522 246888888877777666432 2344667788877 77877754
Q ss_pred ----CCcEEEEecCCCCCccceEeec---CCeeEEEe--CCCCCCEEEEEeCCCcEEEEEC-CCCCCCCCCCCCccceEE
Q 010748 331 ----DRSVVMKDARISTHSGFKWAVA---ADVESLAW--DPHAEHSFVVSLEDGTIKGFDI-RTAKSDPDSTSQQSSFTL 400 (502)
Q Consensus 331 ----dg~i~iwd~~~~~~~~~~~~~~---~~v~~v~~--~~~~~~~~~~~~~dg~v~i~d~-~~~~~~~~~~~~~~~~~~ 400 (502)
..++.+||+.+.+..+. .... .-+..+.| .|....-|+.+.-.++|..|-- ..+. .. .+.+..+
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~-idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~---a~kVi~i 290 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQT-IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WA---AEKVIDI 290 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEE-EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EE---EEEEEEE
T ss_pred cccccCeEEEEECCCCcEeeE-EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--ee---eeEEEEC
Confidence 35799999998876653 3222 22445555 4544444555445555555433 2221 00 0112222
Q ss_pred ec-----------------cCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEECCCC-CeeEEEEec--C------------
Q 010748 401 HA-----------------HDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNN-QPSCIASRN--P------------ 447 (502)
Q Consensus 401 ~~-----------------h~~~v~~l~~sp~~~~~l~t-~s~dg~i~vwd~~~~-~~~~~~~~~--~------------ 447 (502)
.. -..-|+.|.+|.+. ++|.. +=..|.|+.||+... +|.++.+.. +
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g 369 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG 369 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence 11 13558999999998 55554 445999999999874 333333221 1
Q ss_pred --CCCcEEEEEEcCCCCcEEEEEe
Q 010748 448 --KAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 448 --~~~~v~~~~~spd~~~ll~sg~ 469 (502)
-.+...-+..|-||+.+.+|.|
T Consensus 370 ~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 370 KRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ----S----EEE-TTSSEEEEE--
T ss_pred cccCCCCCeEEEccCCeEEEEEee
Confidence 1123466888999986666654
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.79 E-value=0.81 Score=47.26 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.1
Q ss_pred EEEEEeCCCcEEEEECCCCcccccc
Q 010748 464 VLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 464 ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
+++.++.+|.++.+|..+++.+-+.
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEE
Confidence 5667888999999999999988654
No 380
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.79 E-value=0.12 Score=49.71 Aligned_cols=200 Identities=13% Similarity=0.132 Sum_probs=97.2
Q ss_pred EeccCCCcEEEEEecCCc--EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe
Q 010748 273 AWNKEFRNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 350 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 350 (502)
+|.++|..+|+++..+|. +.+.|+.+++..+.-.+-........++|++ +.++-......|+..|+++.+.......
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 678887777777776665 6666888887655443322223356677887 5665555667899999998775543333
Q ss_pred ecCCeeEEEeCCCCCCEEEEEeC-----------------------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCe
Q 010748 351 VAADVESLAWDPHAEHSFVVSLE-----------------------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 351 ~~~~v~~v~~~~~~~~~~~~~~~-----------------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
....+-...|..+.....++|.. ...|...|+.++ ....+..-...+
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG----------~~~~v~~~~~wl 190 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG----------ERKVVFEDTDWL 190 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------------EEEEEEESS-E
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC----------ceeEEEecCccc
Confidence 44444456664332223344321 123444455543 233334455678
Q ss_pred eEEEEcCCCCCEEEEEeC---CCc-EEEEECC--CCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeC----CCcEEEE
Q 010748 408 CTISYNPLVPNLLATGST---DKM-VKLWDLS--NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS----KGKLEIW 477 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~---dg~-i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~----dg~i~vw 477 (502)
..+.|+|..+.+|+-|-. +.. -|||-++ .....++.... ....+..=-|.|||..+...+.. +..|.-+
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 889999988788877764 221 3556444 33322222221 23345566789999865554332 2346667
Q ss_pred ECCCCcc
Q 010748 478 DTLSDAG 484 (502)
Q Consensus 478 d~~~~~~ 484 (502)
|+.+++.
T Consensus 270 d~~t~~~ 276 (386)
T PF14583_consen 270 DPDTGER 276 (386)
T ss_dssp -TTT--E
T ss_pred CCCCCCc
Confidence 7776643
No 381
>PHA02713 hypothetical protein; Provisional
Probab=96.79 E-value=0.1 Score=54.24 Aligned_cols=147 Identities=11% Similarity=0.098 Sum_probs=74.8
Q ss_pred CcEEEEEecCC-----cEEEEeCCCCeee--EeeccCCCCeEEEEEcCCCCcEEEEEeCCC-------------------
Q 010748 279 RNILASASADK-----QVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR------------------- 332 (502)
Q Consensus 279 ~~~l~sgs~dg-----~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg------------------- 332 (502)
+.+.+.|+.++ +|..||..+.+-. ..+.........+.. ++ .+.+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccc
Confidence 45777777654 4888998766422 222211111222222 34 6777777653
Q ss_pred ----cEEEEecCCCCCc--cceEeecCCeeEEEeCCCCCCEEEEEeCC------CcEEEEECCC-CCCCCCCCCCccceE
Q 010748 333 ----SVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRT-AKSDPDSTSQQSSFT 399 (502)
Q Consensus 333 ----~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~~~~~~~d------g~v~i~d~~~-~~~~~~~~~~~~~~~ 399 (502)
.+..||..+.+=. ............+.+. +.++++|+.+ ..+..||..+ .. ...+..
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~---~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~ 498 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK---DDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITT 498 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEEC---CEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccc
Confidence 4667777654311 1010111111122222 3466666643 2467788876 31 233333
Q ss_pred EeccCCCeeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCeeE
Q 010748 400 LHAHDKAVCTISYNPLVPNLLATGSTDK--MVKLWDLSNNQPSC 441 (502)
Q Consensus 400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg--~i~vwd~~~~~~~~ 441 (502)
+.........+.+. +.+.++|+.++ .+-.||..+.+...
T Consensus 499 m~~~r~~~~~~~~~---~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 499 TESRLSALHTILHD---NTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred cCcccccceeEEEC---CEEEEEeeecceeehhhcCcccccccc
Confidence 33333333333332 38888999888 67788888876533
No 382
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.77 E-value=0.42 Score=44.79 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=90.0
Q ss_pred CcEEEEEecCCcEEEEeCCCC-eeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc----------
Q 010748 279 RNILASASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---------- 347 (502)
Q Consensus 279 ~~~l~sgs~dg~v~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------- 347 (502)
++.|+.|..+| |.++++... +...... ...|..+...+.- +.|++-+ |+.+.++++..-.....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 45888998888 999998333 3333322 3349999999877 4554443 59999999876443321
Q ss_pred ----eEeecCCeeEEE-eCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCC-ccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748 348 ----KWAVAADVESLA-WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ-QSSFTLHAHDKAVCTISYNPLVPNLLA 421 (502)
Q Consensus 348 ----~~~~~~~v~~v~-~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~l~ 421 (502)
.......+..++ -........++......|.+|........ . .....+. -...+.+++|.+ ..|+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~-----f~~~~ke~~-lp~~~~~i~~~~---~~i~ 152 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS-----FSKLLKEIS-LPDPPSSIAFLG---NKIC 152 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc-----ccceeEEEE-cCCCcEEEEEeC---CEEE
Confidence 112223344444 11222234444445558888888764110 1 2233333 457789999984 6677
Q ss_pred EEeCCCcEEEEECCCCCeeEEE
Q 010748 422 TGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 422 t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
.|..++ ..+.|+.++....+.
T Consensus 153 v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 153 VGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred EEeCCc-eEEEecCCCCceEEe
Confidence 776554 889999977654444
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.77 E-value=0.3 Score=47.55 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=61.3
Q ss_pred ceeeEEeccCCCcEEEEEec--------------------CCcEEEEeCCCCeeeEeeccCC--CCeEEEEEcC--CCCc
Q 010748 268 SVLGLAWNKEFRNILASASA--------------------DKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWNH--HSPQ 323 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~--------------------dg~v~vwd~~~~~~~~~~~~h~--~~v~~l~~~~--~~~~ 323 (502)
--..+-|.|. .++++|... ..++.+||+.+.+.++++.--. ..+..|.|.. ....
T Consensus 182 ~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~ 260 (461)
T PF05694_consen 182 FGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY 260 (461)
T ss_dssp ----EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred CCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence 3456667776 556666532 3679999999999999986433 2355677754 4434
Q ss_pred EEEEEeCCCcEEEEec-CCCCCcc---------------------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE
Q 010748 324 ILLSGSFDRSVVMKDA-RISTHSG---------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381 (502)
Q Consensus 324 ~l~s~s~dg~i~iwd~-~~~~~~~---------------------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d 381 (502)
-++.+...++|..|-- ..+.-.. .......-|+.+..+.+...+.+++-..|.|+.||
T Consensus 261 gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 261 GFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD 340 (461)
T ss_dssp EEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred eEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence 4555555556655543 2211000 00111345788899999887677777899999999
Q ss_pred CCCC
Q 010748 382 IRTA 385 (502)
Q Consensus 382 ~~~~ 385 (502)
+...
T Consensus 341 ISDP 344 (461)
T PF05694_consen 341 ISDP 344 (461)
T ss_dssp -SST
T ss_pred cCCC
Confidence 9886
No 384
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.018 Score=61.33 Aligned_cols=98 Identities=17% Similarity=0.143 Sum_probs=70.4
Q ss_pred ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee-eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 344 (502)
..-+.++.|+|.-....+.+..|+.|++..+..... +.++. ....++|++|+|.| ..++.|-..|++.-|-..-...
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik 232 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIK 232 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeeccccee
Confidence 345778999998777788899999999988764432 23333 56778999999999 8899999999998887543311
Q ss_pred cc---ceEeecCCeeEEEeCCCCC
Q 010748 345 SG---FKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 345 ~~---~~~~~~~~v~~v~~~~~~~ 365 (502)
.. .-......|.+|+|-....
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred ecccCCCcCCCcceeEEEEeccee
Confidence 11 0111257799999986443
No 385
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.71 E-value=0.00039 Score=66.95 Aligned_cols=210 Identities=18% Similarity=0.222 Sum_probs=140.4
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 344 (502)
|-.......|-+.+.+ ++.++.+..|..|| +.++....+. .++....++|.-+++..++.+-..+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 3344556678888665 77888888999999 4455444443 4567778999998877888888899999999987655
Q ss_pred ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748 345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 424 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s 424 (502)
...-.+....-.-+.|++..+ .++.+...|.+.+++.++. +.......|...++++++.+.+ +.+.++
T Consensus 110 qqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~d 177 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCD 177 (615)
T ss_pred HHHhccCcchHHHHhhccCCc-cccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecC
Confidence 443333333333377888655 6888888999999998875 3344444488899999998854 444444
Q ss_pred CCCc----------EEEEECCCC----------------------------------------CeeEEEEecCCCCcEEE
Q 010748 425 TDKM----------VKLWDLSNN----------------------------------------QPSCIASRNPKAGAVFS 454 (502)
Q Consensus 425 ~dg~----------i~vwd~~~~----------------------------------------~~~~~~~~~~~~~~v~~ 454 (502)
.|.. +.++..... .+..+ .+....+-+.|
T Consensus 178 cd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~~~gni~c 256 (615)
T KOG2247|consen 178 CDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQEKYGNIHC 256 (615)
T ss_pred cHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-EeeecCCceeE
Confidence 4432 333332210 11112 33334567889
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010748 455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 455 ~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
..|--||+ |.-+-.-|.|.+-.+.+++.....|...
T Consensus 257 yrwylDg~--i~igf~ag~iV~iS~h~aeLgaeffqkl 292 (615)
T KOG2247|consen 257 YRWYLDGY--ILIGFDAGYIVSISAHNAELGAEFFQKL 292 (615)
T ss_pred EEEecccc--ccccccceeEEEEeccchHHHHHHHHHh
Confidence 99999986 4456667778777888888877766544
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.67 E-value=0.32 Score=51.64 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=53.3
Q ss_pred ccceeeEEeccCCCcEEEEEecCCcEEEEeCCC----------Cee---eEee--------ccCCCCeEEEEEcCCC--C
Q 010748 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAA----------GKC---NLTL--------EHHTDKVQAVAWNHHS--P 322 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~----------~~~---~~~~--------~~h~~~v~~l~~~~~~--~ 322 (502)
.-.|..|.+||+| .+||..|..| |.|-.+.. |+. .+++ ..+...|..+.|||.+ .
T Consensus 84 ~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 3579999999995 4666666655 44433321 111 1111 2345689999999985 3
Q ss_pred cEEEEEeCCCcEEEEecCCCCCcc
Q 010748 323 QILLSGSFDRSVVMKDARISTHSG 346 (502)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~~~~ 346 (502)
..|++-+.|+++++||+.....+.
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCe
Confidence 788889999999999998655544
No 387
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.027 Score=60.03 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=92.3
Q ss_pred CeEEEEEcCCCCcEEEE--EeCCCcEEEEecCCCCCcc-----------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcE
Q 010748 311 KVQAVAWNHHSPQILLS--GSFDRSVVMKDARISTHSG-----------FKWAVAADVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~~-----------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v 377 (502)
++..+...++. ...++ .+.+-.|..||++...... ..........++.|+|.-+..+++...|+.|
T Consensus 102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34445555564 33332 3334478899988643221 0111233467889999877678888899999
Q ss_pred EEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-CCcEEEEE
Q 010748 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFSVA 456 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~ 456 (502)
++.-+.... ..+.. ..-....++++|+|.| ..++.|-..|++.-|-..-.....+...... ...|.+++
T Consensus 181 ~V~~~~~~~--------~~v~s-~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 181 RVKSTKQLA--------QNVTS-FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhhhhhhh--------hhhcc-cCcccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 998776541 22222 2245678999999998 8899999999999887643321111111111 47899999
Q ss_pred EcCCCCcEEEEE
Q 010748 457 FSEDSPFVLAIG 468 (502)
Q Consensus 457 ~spd~~~ll~sg 468 (502)
|.....|+++-+
T Consensus 251 Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 251 WLSTQEFLVVYG 262 (1405)
T ss_pred EecceeEEEEec
Confidence 998887655444
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.0088 Score=63.24 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=73.7
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.+++|++.|.+..+|++.. ..+...-..-.++|++++|+.+| .+++.|-.+|.|.+||+..+++.......
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n--------L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN--------LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc--------cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeec
Confidence 6888999999999998864 13333333456899999999998 89999999999999999998765544443
Q ss_pred CC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 447 PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 447 ~~-~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
++ ...|..+.+..++. ++.++...|. +|.+.
T Consensus 172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 33 22344555556666 5777777775 66653
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.62 E-value=0.15 Score=50.96 Aligned_cols=155 Identities=14% Similarity=0.190 Sum_probs=96.2
Q ss_pred ccceeeEEeccCCCcEEEEEe--cCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEecC
Q 010748 266 TDSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs--~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~s~dg~i~iwd~~ 340 (502)
-.+|..++|... ...+++.- ..|.+++=| .+.+..| ..|..+.|.|-+ ...|++......|.+|.+.
T Consensus 19 iHPvhGlaWTDG-kqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTDG-KQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecCC-CEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 357899999753 55666653 344444333 2344444 458899999863 2356777888999999986
Q ss_pred CCCC--ccceE----eecC----CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE
Q 010748 341 ISTH--SGFKW----AVAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI 410 (502)
Q Consensus 341 ~~~~--~~~~~----~~~~----~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 410 (502)
.... ..... .... -...+.|+|... ++++-+....-.+++++.. ...+..-....+.|.|.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d--------~srVkaDi~~~G~IhCA 161 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCD--------SSRVKADIKTSGLIHCA 161 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeC--------CceEEEeccCCceEEEE
Confidence 3221 11111 1111 134578999765 5555554444456777765 23444434567889999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 411 SYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
+|.++|.+++++.+..=.-++||-...
T Consensus 162 CWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 162 CWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EecCcCCEEEEEeCCeEEEEEecCchh
Confidence 999999777777776666789986543
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.55 E-value=0.3 Score=50.76 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=75.3
Q ss_pred CcEEEEEecCCc-----EEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC------cEEEEecCCCCCcc-
Q 010748 279 RNILASASADKQ-----VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMKDARISTHSG- 346 (502)
Q Consensus 279 ~~~l~sgs~dg~-----v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg------~i~iwd~~~~~~~~- 346 (502)
+.+.|+|+.||. |-.||..+.+-...-. ......+.....-++.+.++|+.++ ++..||..+..-..
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 568889988864 7778877654321111 1112222222222237788888654 45677776643211
Q ss_pred -ceEeecCCeeEEEeCCCCCCEEEEEeCCCc-----EEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEE
Q 010748 347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGT-----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 347 -~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 420 (502)
.............+ +..++++|+.++. |..||..+.. ...+..+......+..+.+ +..+.
T Consensus 460 ~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~-------W~~v~~m~~~rs~~g~~~~---~~~ly 526 (571)
T KOG4441|consen 460 APMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ-------WTMVAPMTSPRSAVGVVVL---GGKLY 526 (571)
T ss_pred CCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc-------eeEcccCccccccccEEEE---CCEEE
Confidence 11111111222222 2447778877763 7778887652 1222222222233333333 24778
Q ss_pred EEEeCCCc-----EEEEECCCCCe
Q 010748 421 ATGSTDKM-----VKLWDLSNNQP 439 (502)
Q Consensus 421 ~t~s~dg~-----i~vwd~~~~~~ 439 (502)
++|+.||. |..||..+.+.
T Consensus 527 ~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 527 AVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEecccCccccceeEEcCCCCCce
Confidence 88887764 66677666653
No 391
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.74 Score=43.67 Aligned_cols=200 Identities=11% Similarity=0.077 Sum_probs=112.5
Q ss_pred EeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEe--
Q 010748 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-- 350 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-- 350 (502)
.|.+..+.++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+ ..|+++. ..+.+++............
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~-g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAG-GRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCC-CeEEEEc--cccEEEeccCCceeEEecccc
Confidence 57777555777777788999999886643 2232 23334444444444 3455443 3355566544333111111
Q ss_pred ---ecCCeeEEEeCCCCCCEEEEEeCC------------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748 351 ---VAADVESLAWDPHAEHSFVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 351 ---~~~~v~~v~~~~~~~~~~~~~~~d------------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
.....+.+...|+|. ++.++.. |.|+.++.. + .....+..+-..-++|+|||+
T Consensus 106 ~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g---------~~~~l~~~~~~~~NGla~SpD 173 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPD-G---------GVVRLLDDDLTIPNGLAFSPD 173 (307)
T ss_pred CCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCC-C---------CEEEeecCcEEecCceEECCC
Confidence 123456677788765 4444333 223333321 1 233333344455688999999
Q ss_pred CCCEEEEEeCCCcEEEEECCC--C---CeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCccccccc
Q 010748 416 VPNLLATGSTDKMVKLWDLSN--N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNRF 489 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~--~---~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg-~i~vwd~~~~~~~~~~~ 489 (502)
+..++++=+..+.|.-|++.. + ............+..-.++...+|.+ .+++...| .|.+|+.. ++++..+.
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-EEecccCCceEEEECCC-CcEEEEEE
Confidence 955555556668888887752 1 11122233334566677888888874 43444444 89999988 77776654
Q ss_pred cC
Q 010748 490 SK 491 (502)
Q Consensus 490 ~~ 491 (502)
..
T Consensus 252 lP 253 (307)
T COG3386 252 LP 253 (307)
T ss_pred CC
Confidence 44
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.21 Score=45.73 Aligned_cols=175 Identities=10% Similarity=0.130 Sum_probs=101.5
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccce-EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECC
Q 010748 305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383 (502)
Q Consensus 305 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~ 383 (502)
+.+....+.++.|+|+. +.|++......-.++=...++..... ...-+....+.|...+ .++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEc
Confidence 34555669999999999 66666666666656544444443311 1223456677777643 345555567788888776
Q ss_pred CCCCCCCCCC-CccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC-eeEEEEecCC-------CCcEEE
Q 010748 384 TAKSDPDSTS-QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-PSCIASRNPK-------AGAVFS 454 (502)
Q Consensus 384 ~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-~~~~~~~~~~-------~~~v~~ 454 (502)
.......... .-++......+...-.++|.|.. ..|..+-.-.-+.||.+.... ...+.....+ ...|.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 5421111100 01111111125677899999987 666666666667777665332 1111111111 234678
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 455 VAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 455 ~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
+.|.+....+|+-+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 8888776667888888888877777544
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.32 E-value=0.34 Score=50.44 Aligned_cols=191 Identities=10% Similarity=0.167 Sum_probs=98.4
Q ss_pred cceeeEEeccCCCcEEEEEe-----cCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 010748 267 DSVLGLAWNKEFRNILASAS-----ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-------- 331 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs-----~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-------- 331 (502)
..+...+++|++....++.. .|+ .|.+++.. +.. ..+.. ....+.-.|+|+| ..|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG-~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDA-DAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCC-CceEEEecCcceEEEec
Confidence 46788899999665544442 243 45555542 222 32321 2237788999997 444444322
Q ss_pred ----CcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-ccCCC
Q 010748 332 ----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKA 406 (502)
Q Consensus 332 ----g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~ 406 (502)
+.+.+.++..+.... .....|..+.|+|+|..++++. +|.|++--+....... .. ......+. .-...
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~-l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YA-LTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-ee-ecccEEeecccCCc
Confidence 233333443332221 3456799999999998655555 4777763322211000 00 01112222 22334
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEE--ECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcE
Q 010748 407 VCTISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL 474 (502)
Q Consensus 407 v~~l~~sp~~~~~l~t~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i 474 (502)
+.++.|..++ .+ +++..++...+| ++...... .........++.+++-++. . |+....+|.+
T Consensus 499 ~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~--iyv~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-T--VYVTDARAVL 562 (591)
T ss_pred cccceEecCC-EE-EEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-e--EEEEcCCceE
Confidence 6889999977 44 455554444444 44433311 1122223567888888774 3 3344566633
No 394
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.29 E-value=1.7 Score=44.94 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=38.5
Q ss_pred cEEEEeCCCCeeeEeeccCCCC---------eEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCc
Q 010748 290 QVKIWDVAAGKCNLTLEHHTDK---------VQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS 345 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~ 345 (502)
+|.-.|+++|+....++..... ..-+....++. ..++.+..+|.+.+.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 6777899999988877642211 11222323452 47889999999999999987753
No 395
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.20 E-value=0.36 Score=50.32 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=90.3
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe-----CCC--cEEEEecCCCCCccceEeecCCeeEEEe
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDR--SVVMKDARISTHSGFKWAVAADVESLAW 360 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s-----~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 360 (502)
+|.+.-.+-..-.++.-..+....+.+.+.+|++....++.. .+. .|.+++... ... .........+-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~-~lt~g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAV-QVLEGHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cce-eeecCCCCCCceE
Confidence 666655443222233222233346788999999954444442 243 455555422 222 1222334788899
Q ss_pred CCCCCCEEEEEeC-----------CCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748 361 DPHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 361 ~~~~~~~~~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
+|++..+.++... .+.+.+.++..+ .... ...+.|..+.|||+| ..|+... ++.|
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g---------e~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v 470 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS---------AVAS---RVPGPISELQLSRDG-VRAAMII-GGKV 470 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCc---------hhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEE
Confidence 9987644333221 123333333322 1111 235679999999999 5444443 4677
Q ss_pred EE---EECCCCCeeE--EEEec-CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 430 KL---WDLSNNQPSC--IASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 430 ~v---wd~~~~~~~~--~~~~~-~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
.+ -....+...+ ...+. .-...+.++.|.+++. |+ ++..++...+|.+.
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEe
Confidence 77 4434443111 11122 2233468899999998 34 45555555566553
No 396
>PHA03098 kelch-like protein; Provisional
Probab=96.20 E-value=0.16 Score=52.86 Aligned_cols=187 Identities=16% Similarity=0.162 Sum_probs=87.5
Q ss_pred CcEEEEEecCC------cEEEEeCCCCeeeEe--eccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCc
Q 010748 279 RNILASASADK------QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHS 345 (502)
Q Consensus 279 ~~~l~sgs~dg------~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~ 345 (502)
+.+++.|+.++ .+..||+.+.+.... +.........+.+ ++ .+++.|+.+ ..+..||..+.+-.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 34666666542 577888877654221 1111112222222 34 677778765 34667777654311
Q ss_pred cce-EeecCCeeEEEeCCCCCCEEEEEeCC------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748 346 GFK-WAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 346 ~~~-~~~~~~v~~v~~~~~~~~~~~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
... ......-.+++.. ++.+++.|+.. ..+..||..+.. ...+..+.........+.. ++ .
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-------W~~~~~~p~~r~~~~~~~~--~~-~ 439 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK-------WSKGSPLPISHYGGCAIYH--DG-K 439 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe-------eeecCCCCccccCceEEEE--CC-E
Confidence 100 0011111112221 23466666532 357888887642 1111111111111122222 23 5
Q ss_pred EEEEEeCC--------CcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010748 419 LLATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 483 (502)
Q Consensus 419 ~l~t~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~ 483 (502)
+++.|+.. ..+.+||..+.+...+............+.+ ++. +++.||.+ ..|.+||..++.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence 66666643 2388899988765433222211111122222 454 67777764 468889887653
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.18 E-value=0.023 Score=36.80 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 449 ~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
...|.+++|+|... +||.|..+|.|.||.+ +++.+
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence 45699999999998 7999999999999999 55543
No 398
>PRK10115 protease 2; Provisional
Probab=95.99 E-value=2.7 Score=44.99 Aligned_cols=199 Identities=8% Similarity=0.029 Sum_probs=97.3
Q ss_pred cceeeEEeccCCCcEEEEEecCC----cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEE
Q 010748 267 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMK 337 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~dg----~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~i~iw 337 (502)
-.+..+.|+|+++.++++...+| .|++.|+.++..+...-.... ..++|.+++..++++...+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 45778899999664444444444 588999988864322211111 5699999985555554432 356777
Q ss_pred ecCCCC--CccceEeecCCeeEEEeCC-CCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCe-eEEE
Q 010748 338 DARIST--HSGFKWAVAADVESLAWDP-HAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-CTIS 411 (502)
Q Consensus 338 d~~~~~--~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~ 411 (502)
++.++. .............-..+.+ ++..+++.+. .++.+.+++..... ..+ ..+..+...+ ..+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~-------~~~-~~~~~~~~~~~~~~~ 276 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD-------AEP-FVFLPRRKDHEYSLD 276 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC-------CCc-eEEEECCCCCEEEEE
Confidence 777763 2222222222233223333 5554443332 33568888854321 121 2222222222 2222
Q ss_pred EcCCCCCEEEEEeC-CCc--EEEEECCC-CCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 412 YNPLVPNLLATGST-DKM--VKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 412 ~sp~~~~~l~t~s~-dg~--i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
+..+ .+++.... ... |...++.. .+...+... .....|..+.+..+ +++++...+|.-+++-+.
T Consensus 277 -~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 -HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLFTD--WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred -eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEc
Confidence 2222 33333222 122 43344442 222122211 11236778888733 577777778765555443
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.98 E-value=0.45 Score=42.09 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=87.9
Q ss_pred ccccccccccCCCceEEEEEecCCcc-----eeEEEEEecCCCCCCCeeeeecccc---CCCcceeeeecCCCCCCCC-C
Q 010748 139 SEDLEDMTINPNDAVIVCARNEDDVS-----HLEVYILEESDGGDPNLYVHHHIII---PAFPLCMAWLDCPLKDREK-G 209 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~-----~l~v~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~s~~-~ 209 (502)
....++-..+|+|++. .|...+... ...+|.|.. .||-..+ -.++..++| +.+ .
T Consensus 108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~---------~h~v~~i~~~v~IsNgl~W-------d~d~K 170 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA---------GHQVELIWNCVGISNGLAW-------DSDAK 170 (310)
T ss_pred hcccccCccCCCCcee-eeeeccccccccccccEEEEecc---------CCCceeeehhccCCccccc-------cccCc
Confidence 4567888999999994 444333111 112222221 2221111 123455666 444 5
Q ss_pred CEEEEecCCCcEEEeeC--CCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 210 NFMAVGSMEPAIEIWDL--DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 210 ~~la~g~~dg~I~iwdl--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.+-.+-+.+-+|.-||. .+++...+..++. .++. +.. .| -.--.++.... +++.+++-.
T Consensus 171 ~fY~iDsln~~V~a~dyd~~tG~~snr~~i~d----------lrk~---~~~----e~-~~PDGm~ID~e-G~L~Va~~n 231 (310)
T KOG4499|consen 171 KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFD----------LRKS---QPF----ES-LEPDGMTIDTE-GNLYVATFN 231 (310)
T ss_pred EEEEEccCceEEeeeecCCCcccccCcceeEE----------eccC---CCc----CC-CCCCcceEccC-CcEEEEEec
Confidence 56667777788878884 5554443332221 0110 100 11 11112233344 567777788
Q ss_pred CCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEE
Q 010748 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 288 dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 328 (502)
.++|...|..+|+.+..++-.+..|+|++|--.+-.+|++.
T Consensus 232 g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 89999999999999999988899999999976543444443
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.94 E-value=0.37 Score=48.42 Aligned_cols=160 Identities=13% Similarity=0.241 Sum_probs=95.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCccceEeecCCeeEEEeCCC----CCCEEEEEeCCCcEEEEEC
Q 010748 309 TDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDI 382 (502)
Q Consensus 309 ~~~v~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~----~~~~~~~~~~dg~v~i~d~ 382 (502)
-.++..++|.... +.+++.- .+|.+++=|.+ ..+.-..|..++|.|- .+ .+++.-....|.+|-+
T Consensus 19 iHPvhGlaWTDGk-qVvLT~L~l~~gE~kfGds~-------viGqFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWTDGK-QVVLTDLQLHNGEPKFGDSK-------VIGQFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEecCCC-EEEEEeeeeeCCccccCCcc-------EeeccceeeeeeecCcccCCCC-ceEEEeccceEEEEEe
Confidence 3478889997544 6666653 33444332221 2333456888999885 23 4555667788999998
Q ss_pred CCCCCCCCCCCCccceEEeccC---C--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEE
Q 010748 383 RTAKSDPDSTSQQSSFTLHAHD---K--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457 (502)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~h~---~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 457 (502)
....... .+.+.....+- - --.++.|+|.. ..|+.-.....-.+++++.........+ ...|.|.|.+|
T Consensus 90 ~~s~~e~----~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACW 163 (671)
T PF15390_consen 90 CPSTTER----NKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACW 163 (671)
T ss_pred ccCcccc----ccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEe
Confidence 6432111 12222221111 1 12457799976 5666555544445667665543333444 45688999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 458 SEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 458 spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
.+||+.++++.|+.=.-+|||-....
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCchhh
Confidence 99998776666666667899865543
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.92 E-value=2 Score=42.54 Aligned_cols=152 Identities=14% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc---CCCcEEEE
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNILAS 284 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~l~s 284 (502)
+...|++|+..|.++||+...........+| ...-..+|..|..-+ ......++
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lll-----------------------E~~l~~PILqv~~G~F~s~~~~~~La 92 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLL-----------------------ETQLKDPILQVECGKFVSGSEDLQLA 92 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEE-----------------------EEecCCcEEEEEeccccCCCCcceEE
Confidence 5679999999999999998432211111111 112335676665432 11222223
Q ss_pred EecCCcEEEEeCCC--Ce-------eeEeeccCC--CCeEEEEEcCCC----CcEEEEEeCCCcEEEEecCCCCCccceE
Q 010748 285 ASADKQVKIWDVAA--GK-------CNLTLEHHT--DKVQAVAWNHHS----PQILLSGSFDRSVVMKDARISTHSGFKW 349 (502)
Q Consensus 285 gs~dg~v~vwd~~~--~~-------~~~~~~~h~--~~v~~l~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 349 (502)
.-.-..+.||.+.. |. .+..+..|. .....+++-|-| ..++.+-+.||.+.+|+-+...... ..
T Consensus 93 VLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~-~l 171 (418)
T PF14727_consen 93 VLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR-FL 171 (418)
T ss_pred EecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE-Ec
Confidence 34556677777621 11 112222222 233344443322 3678889999999999976543211 11
Q ss_pred eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCC
Q 010748 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384 (502)
Q Consensus 350 ~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~ 384 (502)
...--...++|.+... .|++++.+..|..|....
T Consensus 172 p~~llPgPl~Y~~~tD-sfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 172 PDFLLPGPLCYCPRTD-SFVTASSSWTLECYKYQD 205 (418)
T ss_pred CCCCCCcCeEEeecCC-EEEEecCceeEEEecHHH
Confidence 1111123456666544 788888888998887643
No 402
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.89 E-value=3.2 Score=44.55 Aligned_cols=174 Identities=9% Similarity=0.062 Sum_probs=109.2
Q ss_pred cEEEEeCCCCeeeEeecc-CC---CCeEEEEEcCCCCcEEEEEeC----------CCcEEEEecCCCCCccce--EeecC
Q 010748 290 QVKIWDVAAGKCNLTLEH-HT---DKVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFK--WAVAA 353 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~-h~---~~v~~l~~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~--~~~~~ 353 (502)
.++++|-++-+.++..+- .. ..|.++.|..+...++++|+. .|.|.+|.+......... ....+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 467777666655443321 11 245556688885577887763 578888887763322211 23345
Q ss_pred CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010748 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+.++.-- +. .+++ +-+..|++|+..+. +.++.-..|..++..+...-.+ ..++.|..-+++.+.-
T Consensus 831 av~aL~~f--ng-kllA-~In~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 831 AVYALVEF--NG-KLLA-GINQSVRLYEWTTE---------RELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQ 896 (1096)
T ss_pred ceeehhhh--CC-eEEE-ecCcEEEEEEcccc---------ceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEE
Confidence 55555432 23 2333 34678999999875 4556666778888888888877 8899998888877765
Q ss_pred CCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 434 LSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 434 ~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
.+..+. ........+..+++++.+-.+..| +.+...|.+.+-..
T Consensus 897 y~~~eg~f~evArD~~p~Wmtaveil~~d~y--lgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 897 YKGDEGNFEEVARDYNPNWMTAVEILDDDTY--LGAENSGNLFTVRK 941 (1096)
T ss_pred EeccCCceEEeehhhCccceeeEEEecCceE--EeecccccEEEEEe
Confidence 554431 123344566778888888887764 33456677766544
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.87 E-value=0.7 Score=45.57 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=38.7
Q ss_pred cceeeEEeccC----------CCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcC
Q 010748 267 DSVLGLAWNKE----------FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH 319 (502)
Q Consensus 267 ~~V~~l~~~~~----------~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 319 (502)
..|+++.|-|- +...++.|..+|.|++|.. +|..+..-.-|..+|..+....
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 45666665442 1468999999999999984 6776666566899999998854
No 404
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.81 E-value=0.028 Score=36.37 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=29.6
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCee
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 301 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~ 301 (502)
....|.+++|+|. ..+||.|+.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999 669999999999999998 4543
No 405
>PHA03098 kelch-like protein; Provisional
Probab=95.72 E-value=0.48 Score=49.29 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=74.1
Q ss_pred CcEEEEEecC-----CcEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEecCCCCCc
Q 010748 279 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHS 345 (502)
Q Consensus 279 ~~~l~sgs~d-----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~ 345 (502)
+.+++.|+.+ ..+..||..+++-.. .+....... +++. -++ .+++.|+.. ..+..||..+.+-.
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 4577777765 357788887654321 111111111 1222 233 677777642 35788887754311
Q ss_pred cce-Ee-ecCCeeEEEeCCCCCCEEEEEeCC--------CcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC
Q 010748 346 GFK-WA-VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 346 ~~~-~~-~~~~v~~v~~~~~~~~~~~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
... .. ......++.. ++.+++.|+.+ ..+.+||..+.. ...+..+.........+.+ +
T Consensus 420 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~--~ 487 (534)
T PHA03098 420 KGSPLPISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNIVESYNPVTNK-------WTELSSLNFPRINASLCIF--N 487 (534)
T ss_pred ecCCCCccccCceEEEE---CCEEEEECCccCCCCCcccceEEEecCCCCc-------eeeCCCCCcccccceEEEE--C
Confidence 100 00 0011112222 23466666542 237888887642 1111111111111122222 3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748 416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVF 453 (502)
Q Consensus 416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~ 453 (502)
+ .+++.|+.+ +.|.+||..+.+...+..++...+.|.
T Consensus 488 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~ 529 (534)
T PHA03098 488 N-KIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSLE 529 (534)
T ss_pred C-EEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccccccee
Confidence 3 677777654 468889988876544444444444443
No 406
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.65 E-value=2.3 Score=41.12 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=44.6
Q ss_pred ccceEEeccCCCeeEEEEcCCC------CCEEEEEeCCCcEEEEECCCCCe-eEEEEe-cCCCCcEEEEEEcCCCCcEEE
Q 010748 395 QSSFTLHAHDKAVCTISYNPLV------PNLLATGSTDKMVKLWDLSNNQP-SCIASR-NPKAGAVFSVAFSEDSPFVLA 466 (502)
Q Consensus 395 ~~~~~~~~h~~~v~~l~~sp~~------~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~-~~~~~~v~~~~~spd~~~ll~ 466 (502)
.++..+..| ..++.+.|.... +.++++.-..+.|....+..... .....+ ......+..+++.|||. |++
T Consensus 244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv 321 (331)
T PF07995_consen 244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-LYV 321 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-EEE
T ss_pred ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-EEE
Confidence 355555555 556777776421 14566655567788877764432 222222 33444899999999998 566
Q ss_pred EEeCCCcEE
Q 010748 467 IGGSKGKLE 475 (502)
Q Consensus 467 sg~~dg~i~ 475 (502)
+...+|.|.
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 666778764
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=1.6 Score=40.01 Aligned_cols=207 Identities=15% Similarity=0.130 Sum_probs=108.6
Q ss_pred eeeEEeccCCCcEEEEEecCCc-EEEEeCCCCeeeEeeccCCCC--eEEEEEcCCCCcEEEEEeCC-----CcEEEEecC
Q 010748 269 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDK--VQAVAWNHHSPQILLSGSFD-----RSVVMKDAR 340 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~-v~vwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~ 340 (502)
...|+|+|..+.-++.+-.-|+ ..++|....+...++...++. --.=.|+|+| .+|++.-.| |.|-+||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEecc
Confidence 3457788876666777766665 567888877665554321111 1123589999 777665443 789999998
Q ss_pred CCC-CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEE--------------------ECCCCCCCCCCCCCccceE
Q 010748 341 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--------------------DIRTAKSDPDSTSQQSSFT 399 (502)
Q Consensus 341 ~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~--------------------d~~~~~~~~~~~~~~~~~~ 399 (502)
..- .+.....+.-....+.|.++|.. +++. +|-|... |..++.. ....+
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrt-lvva--nGGIethpdfgR~~lNldsMePSlvlld~atG~l-------iekh~ 218 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRT-LVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL-------IEKHT 218 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcE-EEEe--CCceecccccCccccchhhcCccEEEEeccccch-------hhhcc
Confidence 432 22223345556778889998874 4433 2333333 2222110 00111
Q ss_pred Ee--ccCCCeeEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCeeEEEEec-----CCCCcEEEEEEcCCCCcEEEE
Q 010748 400 LH--AHDKAVCTISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAI 467 (502)
Q Consensus 400 ~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~-----i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~spd~~~ll~s 467 (502)
+. .+.-.|..++..+++ ...+.+-..|. -.|=-...+++....... .....|-+++.+.+...+.+|
T Consensus 219 Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lT 297 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALT 297 (366)
T ss_pred CchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEe
Confidence 11 233456666666655 33333322221 001111112211111110 012346677887766655566
Q ss_pred EeCCCcEEEEECCCCccccc
Q 010748 468 GGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 468 g~~dg~i~vwd~~~~~~~~~ 487 (502)
+-..+...+||..++..+..
T Consensus 298 SP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 298 SPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cCCCCeEEEEEcCCCcEEec
Confidence 55566788999999987654
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.59 E-value=4.2 Score=43.85 Aligned_cols=195 Identities=15% Similarity=0.196 Sum_probs=108.3
Q ss_pred EEEEEecCCcEEEEeCCCCeeeEeeccCCCC--------eEEEEEcCC---------------CCcEEEEEeCCCcEEEE
Q 010748 281 ILASASADKQVKIWDVAAGKCNLTLEHHTDK--------VQAVAWNHH---------------SPQILLSGSFDRSVVMK 337 (502)
Q Consensus 281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~--------v~~l~~~~~---------------~~~~l~s~s~dg~i~iw 337 (502)
.|+.++.++.|.-.|..+|+.+.++...... ...+.+... ....++.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 6778888899999999999988887532211 122333211 11478888899999999
Q ss_pred ecCCCCCccceEeecCCee-------------EEEeCCC-CCCEEEEEeC----------CCcEEEEECCCCCCCCCCCC
Q 010748 338 DARISTHSGFKWAVAADVE-------------SLAWDPH-AEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTS 393 (502)
Q Consensus 338 d~~~~~~~~~~~~~~~~v~-------------~v~~~~~-~~~~~~~~~~----------dg~v~i~d~~~~~~~~~~~~ 393 (502)
|.++++..-. +...+.+. .+.-.|- ....+++|+. +|.|+-||+++++
T Consensus 276 DA~TGk~~W~-fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk------- 347 (764)
T TIGR03074 276 DADTGKLCED-FGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA------- 347 (764)
T ss_pred ECCCCCEEEE-ecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc-------
Confidence 9988875531 11111110 0111110 0125666643 6889999999984
Q ss_pred CccceEEecc----------------C-CCe-eEEEEcCCCCCEEEEEe------------------CCCcEEEEECCCC
Q 010748 394 QQSSFTLHAH----------------D-KAV-CTISYNPLVPNLLATGS------------------TDKMVKLWDLSNN 437 (502)
Q Consensus 394 ~~~~~~~~~h----------------~-~~v-~~l~~sp~~~~~l~t~s------------------~dg~i~vwd~~~~ 437 (502)
.++.+..- . ..+ ..+++.+.. .+++.+. ..++|.-.|+.++
T Consensus 348 --l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 348 --LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred --EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCC
Confidence 33333210 0 111 233444443 3333322 1244666677777
Q ss_pred CeeEEEEecCCC--------CcEEEEEEcC-CCC--cEEEEEeCCCcEEEEECCCCccccc
Q 010748 438 QPSCIASRNPKA--------GAVFSVAFSE-DSP--FVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 438 ~~~~~~~~~~~~--------~~v~~~~~sp-d~~--~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
+..=.+....|. .++ -+.+.. +|. -+++.++.+|.+.+.|..+++.+..
T Consensus 425 k~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 425 KERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 743222222221 122 112222 441 2588899999999999999998754
No 409
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=95.57 E-value=0.0049 Score=58.94 Aligned_cols=18 Identities=6% Similarity=0.291 Sum_probs=12.2
Q ss_pred eeccCCCCCcCCcccCCCCHH
Q 010748 6 SWVPKGASKAVPEEAEPPSKE 26 (502)
Q Consensus 6 ~~~~~g~~~~~~~~~~~~~~~ 26 (502)
-||.+- ..+..|..| ++=
T Consensus 14 dWi~~~--~~~~~KlTi-~Dt 31 (458)
T PF10446_consen 14 DWIRQD--TDYKRKLTI-NDT 31 (458)
T ss_pred hhhhcc--ccccccccH-HHH
Confidence 388874 677778777 543
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=95.53 E-value=0.45 Score=48.61 Aligned_cols=183 Identities=10% Similarity=0.044 Sum_probs=86.1
Q ss_pred CcEEEEEecCC-----cEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEecCCCCCcc--c
Q 010748 279 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARISTHSG--F 347 (502)
Q Consensus 279 ~~~l~sgs~dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~--~ 347 (502)
..+++.|+.++ ++..||..+++... .+.........+. -++ .+.+.|+.+ ..+..||..+.+-.. .
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECC-EEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 34667777543 57778887765322 2221111122222 234 677777754 357778765432110 0
Q ss_pred eEeecCCeeEEEeCCCCCCEEEEEeCCC---cEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEe
Q 010748 348 KWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 424 (502)
Q Consensus 348 ~~~~~~~v~~v~~~~~~~~~~~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s 424 (502)
..........+.. ++.+.++|+.++ .+..||.++.. ...+..+.........+.+ ++ .+.+.|
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~-------W~~~~~m~~~r~~~~~~~~--~~-~IYv~G- 414 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ-------WQFGPSTYYPHYKSCALVF--GR-RLFLVG- 414 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE-------EEeCCCCCCccccceEEEE--CC-EEEEEC-
Confidence 0000111122222 234666666543 46778876541 1111111111111122222 22 555555
Q ss_pred CCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010748 425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 483 (502)
Q Consensus 425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d-----g~i~vwd~~~~~ 483 (502)
|.+.+||..+.+...+.......... +++. -++. ++++||.+ ..+..||..+++
T Consensus 415 --G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~-IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 --RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNK-LLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred --CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCE-EEEECCcCCCcccceEEEEECCCCe
Confidence 35788999887755443332222222 2222 2444 78888864 357788876643
No 411
>PRK10115 protease 2; Provisional
Probab=95.42 E-value=4.7 Score=43.25 Aligned_cols=250 Identities=12% Similarity=0.091 Sum_probs=119.1
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-
Q 010748 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME- 218 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~d- 218 (502)
-.+..+.++|++++|+.+...+..-...+++.+...+ ... ...++.....++| +++++.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg---~~l---~~~i~~~~~~~~w-------~~D~~~~~y~~~~~ 193 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG---NWY---PELLDNVEPSFVW-------ANDSWTFYYVRKHP 193 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC---CCC---CccccCcceEEEE-------eeCCCEEEEEEecC
Confidence 3467789999999999987666555667777776543 110 0111222234666 6788777666543
Q ss_pred -----CcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccccee-eEEeccCCCcEEEEEec--CCc
Q 010748 219 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL-GLAWNKEFRNILASASA--DKQ 290 (502)
Q Consensus 219 -----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~~l~sgs~--dg~ 290 (502)
..|+.+++.+...... ..+........ .+..+.++..+++.++. ++.
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~-------------------------lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~ 248 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDE-------------------------LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSE 248 (686)
T ss_pred CCCCCCEEEEEECCCChhHCe-------------------------EEEeeCCCCEEEEEEEcCCCCEEEEEEECCcccc
Confidence 2456666654311110 01111111122 22333354434433322 356
Q ss_pred EEEEeCC--CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCccceEee-c-CCeeEEEeCCC
Q 010748 291 VKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAV-A-ADVESLAWDPH 363 (502)
Q Consensus 291 v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~-~-~~v~~v~~~~~ 363 (502)
+.+|+.. .+.....+..-......+. +..+ .+++....+ ..|...++...........+ . ..+..+.+..
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~- 325 (686)
T PRK10115 249 VLLLDAELADAEPFVFLPRRKDHEYSLD-HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT- 325 (686)
T ss_pred EEEEECcCCCCCceEEEECCCCCEEEEE-eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-
Confidence 8888842 3332222221122222222 3333 343333322 23444455422222223333 2 3577777763
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-ccCCCeeEEEEc--CCCCCEEEEEeC---CCcEEEEECCCC
Q 010748 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGST---DKMVKLWDLSNN 437 (502)
Q Consensus 364 ~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~~l~t~s~---dg~i~vwd~~~~ 437 (502)
..++++...+|.-+++-+... ...+..+. .....+..+.++ +++..++++.+. -+.+..+|+.++
T Consensus 326 -~~l~~~~~~~g~~~l~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 326 -DWLVVEERQRGLTSLRQINRK--------TREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred -CEEEEEEEeCCEEEEEEEcCC--------CCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 457777777887665544321 11223322 222223333344 333345555443 456888888876
Q ss_pred Ce
Q 010748 438 QP 439 (502)
Q Consensus 438 ~~ 439 (502)
+.
T Consensus 397 ~~ 398 (686)
T PRK10115 397 ER 398 (686)
T ss_pred cE
Confidence 53
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.29 E-value=0.032 Score=58.10 Aligned_cols=169 Identities=14% Similarity=0.150 Sum_probs=100.2
Q ss_pred ccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCC-CCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010748 139 SEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 139 ~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~ 216 (502)
.+.|-+++|-.... .++ .+++.+-||..+.-.+ ..+.|.+|-..+....|--+.|.++. ++.-++..+-
T Consensus 132 ~G~v~dl~fah~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~----~~~~~ic~~~ 202 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA----VNKVYICYGL 202 (1283)
T ss_pred CCCcccccccccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccc----cccceeeecc
Confidence 35566666643321 111 2334567777775444 23466777777888888888898773 4568899999
Q ss_pred CCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEE-----------eccCCCcEEEEE
Q 010748 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA-----------WNKEFRNILASA 285 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~~l~sg 285 (502)
.+|.|++.+.++.. ...+.+|...+..++ .+|+ +..||.+
T Consensus 203 ~~~~i~lL~~~ra~----------------------------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv~a~a 253 (1283)
T KOG1916|consen 203 KGGEIRLLNINRAL----------------------------RSLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTVFAWA 253 (1283)
T ss_pred CCCceeEeeechHH----------------------------HHHHHhcCCCcccHHHHhhchhhheeeCCC-CcEEEEe
Confidence 99999998876321 122334655555544 4677 5588888
Q ss_pred ecCCcEEEEeCC-----CCeeeEeeccCC-CCeEEEEEcCCCC--------cEEEEE-eCCCcEEEEecCCCCCc
Q 010748 286 SADKQVKIWDVA-----AGKCNLTLEHHT-DKVQAVAWNHHSP--------QILLSG-SFDRSVVMKDARISTHS 345 (502)
Q Consensus 286 s~dg~v~vwd~~-----~~~~~~~~~~h~-~~v~~l~~~~~~~--------~~l~s~-s~dg~i~iwd~~~~~~~ 345 (502)
+.||.++.|.+. ..+|++..+.|. .+-.|.-++.+.. .+++++ ..+..+++|.....++.
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 888888877653 234566666676 3333333433220 123333 34566777776654443
No 413
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=1.4 Score=40.26 Aligned_cols=142 Identities=10% Similarity=0.051 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCccceEeecCC--eeEEEeCCCCCCEEEEE-----eCCCcEEEEEC
Q 010748 311 KVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVS-----LEDGTIKGFDI 382 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~v~~~~~~~~~~~~~-----~~dg~v~i~d~ 382 (502)
....|.++|..+.-++.+-.-|+ ..++|....+.+.......+. .-.-+|+|+|. ++++. ..-|.|-+||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEec
Confidence 33457788877666776666665 467888876665533322221 22346899887 44443 23478999999
Q ss_pred CCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeC-------CC-----------cEEEEECCCCCeeEEEE
Q 010748 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-------DK-----------MVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-------dg-----------~i~vwd~~~~~~~~~~~ 444 (502)
+.. ...+-.+..|.-.-..+.+.++| +.|+.+.. -| ++.+.|..++..+...+
T Consensus 148 r~~--------fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~ 218 (366)
T COG3490 148 REG--------FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT 218 (366)
T ss_pred ccc--------cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence 976 46777888888888889999998 66555432 11 12233333333222223
Q ss_pred ec--CCCCcEEEEEEcCCCC
Q 010748 445 RN--PKAGAVFSVAFSEDSP 462 (502)
Q Consensus 445 ~~--~~~~~v~~~~~spd~~ 462 (502)
+. .+.-.|..++..++|.
T Consensus 219 Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred CchhhhhcceeeeeeCCCCc
Confidence 33 3455688888888887
No 414
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=2.6 Score=38.86 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=103.0
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecC--CeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748 309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386 (502)
Q Consensus 309 ~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~ 386 (502)
.+-+..+.++. .+...+..+.-++++|+.++..+........ -..++..+ | ++.+++.-+.-+.++|+.+..
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCC
Confidence 45566677765 5677788888999999999887664443333 23333333 3 467777756667789998873
Q ss_pred CCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEE
Q 010748 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVL 465 (502)
Q Consensus 387 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll 465 (502)
. ....-+.......-..++.| | ++...+..|+-+.+-|+..... .++-... ....+.++..+++.-| +
T Consensus 160 s------P~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y-~ 228 (370)
T COG5276 160 S------PQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAY-L 228 (370)
T ss_pred C------ceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeE-E
Confidence 2 12223333334444667777 3 6777777889999999987653 3333332 2337888988888764 4
Q ss_pred EEEeCCCcEEEEECCCCccccccccCCCCC
Q 010748 466 AIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 466 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
+. ... .+.+-|..+.+. .++|+.+...
T Consensus 229 vv-y~e-gvlivd~s~~ss-p~~~gsyet~ 255 (370)
T COG5276 229 VV-YDE-GVLIVDVSGPSS-PTVFGSYETS 255 (370)
T ss_pred EE-ccc-ceEEEecCCCCC-ceEeeccccC
Confidence 43 333 467777755442 3455554443
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.14 E-value=2.7 Score=38.84 Aligned_cols=161 Identities=11% Similarity=0.046 Sum_probs=89.6
Q ss_pred ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe-cCCCCCcc
Q 010748 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARISTHSG 346 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~ 346 (502)
.+.+.++++++..+.+....++.-.||-...+.....+. ....+..-.|.+++ .+.+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCccee
Confidence 688999999965444444233333444333333333321 22367788999997 6666666666666664 33333222
Q ss_pred ceE--eec-CCeeEEEeCCCCCCEEEEEe--CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEE
Q 010748 347 FKW--AVA-ADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421 (502)
Q Consensus 347 ~~~--~~~-~~v~~v~~~~~~~~~~~~~~--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 421 (502)
... ... ..|..+.++|+|..+.++.. ..+.|.+--+.............+..........++.+.|.+.+ .+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence 111 111 28999999999987666653 35677776554332110000012222223345688999999987 5555
Q ss_pred EEeC-CCcEEE
Q 010748 422 TGST-DKMVKL 431 (502)
Q Consensus 422 t~s~-dg~i~v 431 (502)
.+.. ++.+..
T Consensus 182 ~~~~~~~~~~~ 192 (253)
T PF10647_consen 182 LGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCceeE
Confidence 5544 343433
No 416
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.07 E-value=1 Score=44.47 Aligned_cols=140 Identities=19% Similarity=0.126 Sum_probs=90.0
Q ss_pred EEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCC------CcEEEEEeCCCcEEEEecCCCCCccceEee---
Q 010748 281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS------PQILLSGSFDRSVVMKDARISTHSGFKWAV--- 351 (502)
Q Consensus 281 ~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 351 (502)
++..|..-..++-.|+..|+.+.....|..- -+.|.|.. +..-++|-.+..|.-.|.|...........
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 4455666778888899999999999877665 46777753 112345556666776777654422111111
Q ss_pred --cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748 352 --AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 352 --~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
.....|..-.. ..++++++..|-|++||--.. .....+++-...|..+..+.+|..+|+|| ...+
T Consensus 560 ~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yl 626 (776)
T COG5167 560 KTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTANGKHILATC--KNYL 626 (776)
T ss_pred ccccccccccccc--CceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeecCCcEEEEee--cceE
Confidence 22233333222 348999999999999996543 34445566777889999999985555554 3457
Q ss_pred EEEECC
Q 010748 430 KLWDLS 435 (502)
Q Consensus 430 ~vwd~~ 435 (502)
.+-|++
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 777764
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.85 E-value=0.12 Score=32.34 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=28.0
Q ss_pred CcEEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCcc
Q 010748 450 GAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 450 ~~v~~~~~spd~~--~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
|.|.++.|+|... -+|+.+-..|.|.|+|++++-.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 5689999997543 4788888889999999986433
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.73 E-value=7.2 Score=41.76 Aligned_cols=36 Identities=11% Similarity=0.317 Sum_probs=29.3
Q ss_pred CcccceeeEEeccCC--CcEEEEEecCCcEEEEeCCCC
Q 010748 264 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~--~~~l~sgs~dg~v~vwd~~~~ 299 (502)
.+...|..+.|+|.+ +..|+.=..|+++++||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 456789999999974 357777888999999999754
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.65 E-value=3.6 Score=37.97 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEE-CCCCCCCC
Q 010748 311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDP 389 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d-~~~~~~~~ 389 (502)
.+.+.++++++..+.++...++.-.+|-.+......... ....+..-.|++++. +.++...+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~--- 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT--- 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCc---
Confidence 688999999994444444334444444444333222111 334778889999854 566656566666663 23221
Q ss_pred CCCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCC---CCeeE----EEEecCCCCcEEEEEEc
Q 010748 390 DSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSN---NQPSC----IASRNPKAGAVFSVAFS 458 (502)
Q Consensus 390 ~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~---~~~~~----~~~~~~~~~~v~~~~~s 458 (502)
......... ...|+.+.+||+|.++.+... .++.|.+--+.. +.+.. ..........+..+.|.
T Consensus 100 -----~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 -----GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred -----ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 111122211 128999999999955444442 246666654421 21111 11122334678999999
Q ss_pred CCCCcEEEEEeCCCcEEE
Q 010748 459 EDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 459 pd~~~ll~sg~~dg~i~v 476 (502)
+++..++++...++.+..
T Consensus 175 ~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCEEEEEeCCCCCceeE
Confidence 999844444334443333
No 420
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.63 E-value=0.87 Score=44.92 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=90.4
Q ss_pred EEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCC------CEEEEEeCCCcEEEEECCCCCCCCCCCCCccc
Q 010748 324 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS 397 (502)
Q Consensus 324 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~------~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 397 (502)
++..|+.-..++-.|+..++.+. .|.....+ -+.|.|... ..-++|-++..|.-.|.|-.. ..+
T Consensus 482 i~~dg~~~~kLykmDIErGkvve-eW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--------NKi 551 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVE-EWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--------NKI 551 (776)
T ss_pred EEecCCCcccceeeecccceeee-EeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC--------Cce
Confidence 34455556677777777776554 67666666 677777431 235567677777777777542 111
Q ss_pred eEEec----cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 010748 398 FTLHA----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 473 (502)
Q Consensus 398 ~~~~~----h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~ 473 (502)
..... .....+|..-.. ..++|++|..|-|++||--..+ ....+++....|-.+..+.+|.++|||| ...
T Consensus 552 ~v~esKdY~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTC--k~y 625 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATC--KNY 625 (776)
T ss_pred eeeeehhcccccccccccccc--CceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEee--cce
Confidence 11111 112223332222 3699999999999999975544 3344566677899999999999888876 347
Q ss_pred EEEEECCC
Q 010748 474 LEIWDTLS 481 (502)
Q Consensus 474 i~vwd~~~ 481 (502)
+.+-|+.-
T Consensus 626 llL~d~~i 633 (776)
T COG5167 626 LLLTDVPI 633 (776)
T ss_pred EEEEeccc
Confidence 88877743
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=2.6 Score=43.85 Aligned_cols=161 Identities=13% Similarity=0.214 Sum_probs=80.3
Q ss_pred ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEe--e--ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE-ecCCC
Q 010748 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK-DARIS 342 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iw-d~~~~ 342 (502)
.+..+.|+.+ ..|++...+|++.+|++-.. .+.. + ......|..+.+...| +++-..+|.+.+- +...+
T Consensus 85 ~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDD--EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCC--ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCcc
Confidence 7889999988 36888899999999997532 2222 1 1122345445554555 3333444555443 33332
Q ss_pred CCccceEeecCCeeEEEeC---CCC-CCEEEEEe-CCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCC
Q 010748 343 THSGFKWAVAADVESLAWD---PHA-EHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 343 ~~~~~~~~~~~~v~~v~~~---~~~-~~~~~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
......-.......+-+|. |+. ...++--. ..| ..++-.... ......+....+.+..+..||+.
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~--------~~q~~~~~~~~~~~~ki~VS~n~- 228 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES--------RVQLHALSWPNSSVVKISVSPNR- 228 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc--------cccccccCCCCceEEEEEEcCCc-
Confidence 2111000011111112222 211 11111111 111 112222221 11222222234567888999987
Q ss_pred CEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010748 418 NLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
++|+--...|.|.+-++...+..+-+.
T Consensus 229 ~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 229 RFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEecCCcEEEEecchhhhhhccC
Confidence 889998999999998887666434333
No 422
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.38 E-value=4.1 Score=37.39 Aligned_cols=184 Identities=11% Similarity=0.101 Sum_probs=104.9
Q ss_pred cceeeEEeccCCCcEEEEEecCC--cEEEEeCCCCeeeEeeccC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748 267 DSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 343 (502)
.-...|.|..+ +.++-|.+.-| .|+.+|+.+++......-. .----.++...+ .+..-.-.++...+||..+.+
T Consensus 45 aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccce
Confidence 34567888665 45777777666 6999999999877655321 122233444332 455556678899999998766
Q ss_pred CccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec--cC---CCeeEEEEcCCCCC
Q 010748 344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPN 418 (502)
Q Consensus 344 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~sp~~~~ 418 (502)
... .+...+.-..++.. +. .++.+.....|+++|..+. ....++.. .. ..++-+.|.. | .
T Consensus 122 ~~~-~~~y~~EGWGLt~d--g~-~Li~SDGS~~L~~~dP~~f---------~~~~~i~V~~~g~pv~~LNELE~i~-G-~ 186 (264)
T PF05096_consen 122 KIG-TFPYPGEGWGLTSD--GK-RLIMSDGSSRLYFLDPETF---------KEVRTIQVTDNGRPVSNLNELEYIN-G-K 186 (264)
T ss_dssp EEE-EEE-SSS--EEEEC--SS-CEEEE-SSSEEEEE-TTT----------SEEEEEE-EETTEE---EEEEEEET-T-E
T ss_pred EEE-EEecCCcceEEEcC--CC-EEEEECCccceEEECCccc---------ceEEEEEEEECCEECCCcEeEEEEc-C-E
Confidence 554 44555666666643 44 5777766788999998775 33333322 22 2345566652 3 3
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEEec-------------CCCCcEEEEEEcCCCCcEEEEE
Q 010748 419 LLATGSTDKMVKLWDLSNNQPSCIASRN-------------PKAGAVFSVAFSEDSPFVLAIG 468 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~v~~~~~spd~~~ll~sg 468 (502)
+.|=.=....|...|..+++......+. ....-.+.+++.|....+++||
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 4444444556777788887743332221 1134578999999887677776
No 423
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.34 E-value=6.1 Score=39.23 Aligned_cols=296 Identities=9% Similarity=0.081 Sum_probs=144.9
Q ss_pred CceEEEEEecCCcceeEEEEEecCCCCCCCeeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCC
Q 010748 151 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID 230 (502)
Q Consensus 151 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~ 230 (502)
...|++|+..| .|+||.-.........+....+ +....++++.-.|.. ....+.||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G---~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s--~~~~~~LaV-LhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 37 SDKIIVGSYSG---ILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVS--GSEDLQLAV-LHPRKLSVYSVSLVD 108 (418)
T ss_pred ccEEEEecccc---EEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccC--CCCcceEEE-ecCCEEEEEEEEecC
Confidence 35888898887 4555544332221123333332 344556776644311 224556666 445788899883222
Q ss_pred CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc-CCCcEEEEEecCCcEEEEeCCCCeeeEeeccCC
Q 010748 231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEHHT 309 (502)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~ 309 (502)
.... .+. .-.-.....+.+....-...+-.|-. .++.+|+.-|.||.+.+++-+.-...+.+.. .
T Consensus 109 g~~~---~g~----------~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 109 GTVE---HGN----------QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCcc---cCc----------EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 1100 000 00000011111111111222222222 2256899999999999999665443444433 2
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC--------------------CCCccceE--eecCCeeEE---EeCCCC
Q 010748 310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--------------------STHSGFKW--AVAADVESL---AWDPHA 364 (502)
Q Consensus 310 ~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~--------------------~~~~~~~~--~~~~~v~~v---~~~~~~ 364 (502)
--...+.|.+.. ..|++++.+..+.-|.... ++.....| .....+..+ .++...
T Consensus 175 llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 175 LLPGPLCYCPRT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCCcCeEEeecC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 233456787777 7788898888888886431 11111222 223333333 333322
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEE-EE------cCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-SY------NPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 365 ~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~------sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
..+++.| ...+.+.+... ...+...- .....|+ .| .|.....++.++.++++.||.=.+
T Consensus 254 ~~IvvLg--er~Lf~l~~~G----------~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~- 319 (418)
T PF14727_consen 254 SDIVVLG--ERSLFCLKDNG----------SLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT- 319 (418)
T ss_pred ceEEEEe--cceEEEEcCCC----------eEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-
Confidence 2233332 33444444421 12222211 2211221 11 222223588889999999986332
Q ss_pred CeeEEEEecCCCCcEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010748 438 QPSCIASRNPKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~--spd~~~ll~sg~~dg~i~vwd~~~~~~~~~ 487 (502)
++........+| ++.. .++-+.+|++-+.+|.+.+-=+.|...+..
T Consensus 320 ---L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 320 ---LVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred ---EEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence 333333333333 2322 233344788899999999988888765443
No 424
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.26 E-value=0.0036 Score=64.70 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=47.1
Q ss_pred eeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEE-----------EcCCCCcEEEEEeCCCcEEEE
Q 010748 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVA-----------WNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~-----------~~~~~~~~l~s~s~dg~i~iw 337 (502)
|..+-|-+. .-++..+-.+++|++..+.+... ..+.+|+..+..++ .+|+| ..|++++.||.+++|
T Consensus 186 V~wcp~~~~-~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 186 VSWCPIAVN-KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY 262 (1283)
T ss_pred eeecccccc-cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence 333333444 45777777888998877664432 34455776665554 47888 889999999999888
Q ss_pred ecCC
Q 010748 338 DARI 341 (502)
Q Consensus 338 d~~~ 341 (502)
.+.-
T Consensus 263 Qiyi 266 (1283)
T KOG1916|consen 263 QIYI 266 (1283)
T ss_pred eeee
Confidence 7653
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.23 E-value=3.8 Score=36.48 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCcEEEEEeC----------CCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEE
Q 010748 311 KVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 380 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~ 380 (502)
....-..+|+| ++ +.|.. .|.++.|-.. ..+...+..-.--+.++|+.+...+.++-+.+-.|.-|
T Consensus 110 R~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 110 RLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred ccccCccCCCC-ce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 44555667888 55 33332 1334444332 22223344444456789998877777777888888778
Q ss_pred E--CCCCCCCCCCCCCccceEEec----cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE
Q 010748 381 D--IRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 454 (502)
Q Consensus 381 d--~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 454 (502)
| ..++.... .+.++.+.. ....--.+++...| ++.+++-.-++|..+|..+++. +..+......|+|
T Consensus 186 dyd~~tG~~sn----r~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~--L~eiklPt~qits 258 (310)
T KOG4499|consen 186 DYDCPTGDLSN----RKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKI--LLEIKLPTPQITS 258 (310)
T ss_pred ecCCCcccccC----cceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcE--EEEEEcCCCceEE
Confidence 7 55543211 122333322 11112344555556 7778888889999999999994 4444445778999
Q ss_pred EEEcCC
Q 010748 455 VAFSED 460 (502)
Q Consensus 455 ~~~spd 460 (502)
++|--.
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 999644
No 426
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.97 E-value=3.3 Score=43.60 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=93.8
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCc---ceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccC-CCcEEEE
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQP---HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILAS 284 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s 284 (502)
.++|+++. .+.|.||+++....... ...+-..... ..............| .|+.|....- +..+|+.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~------~~~~D~~~s~~p~PH--tIN~i~v~~lg~~EVLl~ 119 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEF------TSTPDRLISTWPFPH--TINFIKVGDLGGEEVLLL 119 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccc------cccccccccCCCCCc--eeeEEEecccCCeeEEEE
Confidence 66777765 68999999876444221 1111000000 000000000011223 3555544332 2458999
Q ss_pred EecCCcEEEEeCCC-------C-------------eeeEeeccCCCCeEEEEEc--CCCCcEEEEEeCCCcEEEEecCCC
Q 010748 285 ASADKQVKIWDVAA-------G-------------KCNLTLEHHTDKVQAVAWN--HHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 285 gs~dg~v~vwd~~~-------~-------------~~~~~~~~h~~~v~~l~~~--~~~~~~l~s~s~dg~i~iwd~~~~ 342 (502)
|..||.|.+|.+.+ . ++...+. ....+++++++ ... +++|+++....|.||-....
T Consensus 120 c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 120 CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEEEEecCCceEEEEEEecc
Confidence 99999999997531 0 0112222 34578999998 555 78888888888888765442
Q ss_pred --CC-ccceEeecCCeeEEEeCCCC--CC---EEEEEeCCCcEEEEEC
Q 010748 343 --TH-SGFKWAVAADVESLAWDPHA--EH---SFVVSLEDGTIKGFDI 382 (502)
Q Consensus 343 --~~-~~~~~~~~~~v~~v~~~~~~--~~---~~~~~~~dg~v~i~d~ 382 (502)
+. ......+...|.+|+|.++. +. .+++++-.|.+.+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11 11122466779999997754 22 6777889999999888
No 427
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.75 E-value=7.5 Score=42.36 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=78.8
Q ss_pred eecCCeeEEEeC---CC--CCCEEEEEeCCCcEEEEECCCC------CCCCCCCCCccceEEecc---CCCeeEEEEcCC
Q 010748 350 AVAADVESLAWD---PH--AEHSFVVSLEDGTIKGFDIRTA------KSDPDSTSQQSSFTLHAH---DKAVCTISYNPL 415 (502)
Q Consensus 350 ~~~~~v~~v~~~---~~--~~~~~~~~~~dg~v~i~d~~~~------~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~ 415 (502)
....+|..|+|. .. ....++..-....+.|+...-. ..........++..+..+ ..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356788888887 21 1112444445566777762211 111111112445555433 346788999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC--e-eEEEEecCCCCc----------EEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010748 416 VPNLLATGSTDKMVKLWDLSNNQ--P-SCIASRNPKAGA----------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~~~--~-~~~~~~~~~~~~----------v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~ 482 (502)
....||.....|...||++.... . ........+.|. -..+.|.++...+|+ + ....+.++|+.+.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~-~r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-C-NRSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-E-cCCceEEEECCCC
Confidence 77899999999999999992111 0 011111111222 347889888775454 3 4557999999887
Q ss_pred cccc
Q 010748 483 AGIS 486 (502)
Q Consensus 483 ~~~~ 486 (502)
....
T Consensus 235 ~~~~ 238 (765)
T PF10214_consen 235 WQTE 238 (765)
T ss_pred Cccc
Confidence 6643
No 428
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.66 E-value=0.025 Score=54.28 Aligned_cols=12 Identities=8% Similarity=0.326 Sum_probs=7.4
Q ss_pred CCCCEEEEecCC
Q 010748 207 EKGNFMAVGSME 218 (502)
Q Consensus 207 ~~~~~la~g~~d 218 (502)
|+..=|++|+.|
T Consensus 190 PDSTDFVCGTLD 201 (458)
T PF10446_consen 190 PDSTDFVCGTLD 201 (458)
T ss_pred CCcccccCCCcC
Confidence 566666666654
No 429
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.55 E-value=0.46 Score=46.09 Aligned_cols=169 Identities=13% Similarity=0.059 Sum_probs=96.8
Q ss_pred eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEee--cC----Cee-EEEeCCCCCCEEEEEeCC
Q 010748 302 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AA----DVE-SLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 302 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~----~v~-~v~~~~~~~~~~~~~~~d 374 (502)
+..+..-...|..+-..|++ +.|+.-+. ..+.++++.+.......... ++ .|+ ++..- .|..-++++..|
T Consensus 213 i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~d 289 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHED 289 (733)
T ss_pred hhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCC
Confidence 33344455678888899999 66666554 78888888765433221111 11 122 11111 244568888888
Q ss_pred CcEEEE-ECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEE
Q 010748 375 GTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 453 (502)
Q Consensus 375 g~v~i~-d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 453 (502)
|.|.-| |++...... ...++.+.-...++.-+.--.+ .+-+++-+..|++.++.....++..... -...+.
T Consensus 290 G~vsQWFdvr~~~~p~----l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~ 361 (733)
T COG4590 290 GLVSQWFDVRRDGQPH----LNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQ 361 (733)
T ss_pred CceeeeeeeecCCCCc----ceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceehhh---hhcCcc
Confidence 887665 776652100 1111222222233433332222 3667888889999888766655322222 123566
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010748 454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 454 ~~~~spd~~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
-+++||.+.+++. -..|.++++.+.+..
T Consensus 362 ~~~~Sp~~~~Ll~--e~~gki~~~~l~Nr~ 389 (733)
T COG4590 362 LVAMSPNQAYLLS--EDQGKIRLAQLENRN 389 (733)
T ss_pred eeeeCcccchhee--ecCCceEEEEecCCC
Confidence 7899999997443 456789999987654
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.43 E-value=4 Score=38.60 Aligned_cols=151 Identities=10% Similarity=0.077 Sum_probs=73.4
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CC
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-ST 343 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-~~ 343 (502)
-...+..+.-+++ +.++++++.-....-|+.-...-...-+..+..|++|.|.|++ .+.+ ....|.|++=+... ..
T Consensus 143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCcc
Confidence 3467888888888 4577777765566678754322222223346899999999997 5544 44888888877211 11
Q ss_pred C----ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCC
Q 010748 344 H----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLV 416 (502)
Q Consensus 344 ~----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~ 416 (502)
. ........-.+..++|.+.+. +.+++..|.+. .....+ +.-.... .-...+..|.|.+.
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~--~wa~gg~G~l~-~S~DgG---------ktW~~~~~~~~~~~n~~~i~f~~~- 286 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE--IWAVGGSGTLL-VSTDGG---------KTWQKDRVGENVPSNLYRIVFVNP- 286 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS---EEEEESTT-EE-EESSTT---------SS-EE-GGGTTSSS---EEEEEET-
T ss_pred ccccccCCcccCceeeEEEEecCCCC--EEEEeCCccEE-EeCCCC---------ccceECccccCCCCceEEEEEcCC-
Confidence 0 000111223478899998643 44455566543 334433 2222222 22445778888764
Q ss_pred CCEEEEEeCCCcEEEE
Q 010748 417 PNLLATGSTDKMVKLW 432 (502)
Q Consensus 417 ~~~l~t~s~dg~i~vw 432 (502)
..-...+.+|.|--|
T Consensus 287 -~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 -DKGFVLGQDGVLLRY 301 (302)
T ss_dssp -TEEEEE-STTEEEEE
T ss_pred -CceEEECCCcEEEEe
Confidence 344455667876544
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.32 E-value=0.31 Score=30.61 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCC--cEEEEEeCCCcEEEEecCC
Q 010748 310 DKVQAVAWNHHSP--QILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 310 ~~v~~l~~~~~~~--~~l~s~s~dg~i~iwd~~~ 341 (502)
+.|.++.|+|... .+|+.+-.-|.|.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998764 6899888999999999995
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.14 E-value=3.5 Score=42.90 Aligned_cols=120 Identities=12% Similarity=0.103 Sum_probs=68.8
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc-ceEeecCCeeEEEeC--CCCCCEEEEEeCCCcEEEEECCCCCC
Q 010748 311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAKS 387 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~--~~~~~~~~~~~~dg~v~i~d~~~~~~ 387 (502)
.++-+.-+..+ ...++-+....+.|||.+...... ..+.....|..+.|. |++. .+++.+-...|.+|--.....
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhh
Confidence 44444445544 455555556689999998766322 122347789999985 5555 455555567777775432211
Q ss_pred CCCCCCCccceEE--eccC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010748 388 DPDSTSQQSSFTL--HAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435 (502)
Q Consensus 388 ~~~~~~~~~~~~~--~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~ 435 (502)
....+...++..+ ..|+ .+|....|.++| .++ +|+ .+.+.|++-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLV-VGS-GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCC-eEE-EEe-CCEEEEECCC
Confidence 1111112334333 3444 689999999987 444 433 3468888643
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.85 E-value=0.015 Score=56.41 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=92.4
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEE
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.+.+.-+++++.+..+..||-...-. ....-++....++|..++...++.+
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq~~-----------------------------le~n~tg~aldm~wDkegdvlavlA 93 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQVI-----------------------------LELNPTGKALDMAWDKEGDVLAVLA 93 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhccee-----------------------------cccCCchhHhhhhhccccchhhhhh
Confidence 45555588888888888888532110 0112345677888888777677777
Q ss_pred ecCCcEEEEeCCCCeeeEe-e-ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCC
Q 010748 286 SADKQVKIWDVAAGKCNLT-L-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~-~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 363 (502)
-..+.+.+||+.+...... + ..|+... +.|++.. ..++.+...|.+.+++.++.+.......|...+++++|.+.
T Consensus 94 ek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 94 EKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 8889999999976532111 1 1122222 6788887 77888889999999999988777656668889999999985
Q ss_pred CCCEEEEEeCC
Q 010748 364 AEHSFVVSLED 374 (502)
Q Consensus 364 ~~~~~~~~~~d 374 (502)
+ +.+.++.+
T Consensus 171 d--~vil~dcd 179 (615)
T KOG2247|consen 171 D--YVILCDCD 179 (615)
T ss_pred c--eeeecCcH
Confidence 4 34444433
No 434
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.70 E-value=8.7 Score=35.93 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=61.8
Q ss_pred CcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEe------CCCcEEEEecCCCCCccceE----eecCCeeEE
Q 010748 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKW----AVAADVESL 358 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v 358 (502)
..|++||..+.+-..--.+-.+.|++|.|..+. .++++|. ....+..||+.+..-..... ..++++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 359999988776655555667899999998655 6777764 35578889988765322222 235778888
Q ss_pred EeCCC-CCCEEEEEe-CCC--cEEEEECCCC
Q 010748 359 AWDPH-AEHSFVVSL-EDG--TIKGFDIRTA 385 (502)
Q Consensus 359 ~~~~~-~~~~~~~~~-~dg--~v~i~d~~~~ 385 (502)
.+... ...+++.|. .+| .|..||=.+.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 77443 334555554 333 4666765543
No 435
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.64 E-value=9.3 Score=36.15 Aligned_cols=160 Identities=11% Similarity=0.162 Sum_probs=76.6
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 306 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 306 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~ 385 (502)
..-.+.+..+.-++++ .++++++.-..+.-|+--...-..........|.++.|.|++. +.+ ....|.|++=+....
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCC
Confidence 3445778888889998 7777776655566777543322232334567899999999854 434 458888888772221
Q ss_pred CCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCCCCcEEEEEEcCCCCcE
Q 010748 386 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFV 464 (502)
Q Consensus 386 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~l 464 (502)
.... .++...+....-.+..++|.+.+ .+.++|+ .|.+ +.....++.-.... ...-.+.++.+.|.+..+ -
T Consensus 218 ~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-g 289 (302)
T PF14870_consen 218 GETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-G 289 (302)
T ss_dssp EEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-E
T ss_pred cccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-e
Confidence 0000 00111111223347889999865 5555544 5544 44555555211111 123345688888876654 2
Q ss_pred EEEEeCCCcEEEE
Q 010748 465 LAIGGSKGKLEIW 477 (502)
Q Consensus 465 l~sg~~dg~i~vw 477 (502)
++ -|.+|.|.-|
T Consensus 290 f~-lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FV-LGQDGVLLRY 301 (302)
T ss_dssp EE-E-STTEEEEE
T ss_pred EE-ECCCcEEEEe
Confidence 44 4678877655
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=92.51 E-value=9.5 Score=39.02 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=29.6
Q ss_pred CcEEEEEecCC---cEEEEeCCCCeeeE--eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 010748 279 RNILASASADK---QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 279 ~~~l~sgs~dg---~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~ 342 (502)
+.+.+.|+.++ ++..||..+.+-.. .+.........+.+ ++ .+.+.| |.+.+||.++.
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~-~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GR-RLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CC-EEEEEC---CceEEecCCCC
Confidence 45677777553 47788887654322 12111111122222 33 555655 35778887654
No 437
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.41 E-value=4.6 Score=42.10 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=62.4
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEe-ccCCCeeEEEEc--CCCCCEEEEEeCCCcEEEEECC-----CCC
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLS-----NNQ 438 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~~l~t~s~dg~i~vwd~~-----~~~ 438 (502)
..++......+.|||.+.. ...+... .....|..+.|. |++ +.+++.|..+.|.+|--. ...
T Consensus 43 ~a~V~~~~~~LtIWD~~~~---------~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSG---------VLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred EEEEECCCCEEEEEEcCCc---------EEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCC
Confidence 4445555567999999976 2222111 446789999886 466 777888888889888542 211
Q ss_pred ----eeEEEEecCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010748 439 ----PSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 439 ----~~~~~~~~~~~-~~v~~~~~spd~~~ll~sg~~dg~i~vwd~ 479 (502)
+........+. .+|....|.++|.. ++ |+ .+.+.|++-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L-vV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTL-VV-GS-GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeE-EE-Ee-CCEEEEECC
Confidence 11222223333 57899999999973 33 33 346888864
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.38 E-value=4.4 Score=40.43 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=52.6
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEE---------CCCCCeeE----------EEEecCCCCcEEEEEEcCCC--Cc
Q 010748 405 KAVCTISYNPLVPNLLATGSTDKMVKLWD---------LSNNQPSC----------IASRNPKAGAVFSVAFSEDS--PF 463 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd---------~~~~~~~~----------~~~~~~~~~~v~~~~~spd~--~~ 463 (502)
-.|..+..++.| ..++-.|.+|.+.++= +..+++.. +++... .-.+..++|+|+. .-
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~-~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST-SLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC-ceeeeeccccCCccCCc
Confidence 357788889988 7777778888655543 12233211 111121 2346788999986 22
Q ss_pred EEEEEeCCCcEEEEECCCCcccccc
Q 010748 464 VLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 464 ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
.|..-++|..|+||++.....+...
T Consensus 182 hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhcc
Confidence 3666688999999999887777443
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.37 E-value=6.9 Score=41.32 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=69.4
Q ss_pred cEEEEEeCCCcEEEEecCC-------C----C--------CccceEeecCCeeEEEeC--CCCCCEEEEEeCCCcEEEEE
Q 010748 323 QILLSGSFDRSVVMKDARI-------S----T--------HSGFKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFD 381 (502)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~-------~----~--------~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~~dg~v~i~d 381 (502)
.+|+.+..||.|.+|.+.. . . .+.........++.++++ .. .+++++++....|.+|-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEEEecCCceEEEEE
Confidence 6889999999999997631 0 0 012334556778889987 53 45788888777787776
Q ss_pred CCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCC--CC---EEEEEeCCCcEEEEEC
Q 010748 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PN---LLATGSTDKMVKLWDL 434 (502)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~~---~l~t~s~dg~i~vwd~ 434 (502)
...... ......-..|...|-+|+|.++. +. .|++++-.|.+.+|++
T Consensus 194 f~l~~~------r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDE------RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eecccc------ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 554211 01111122366778899998753 22 7888899999999887
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.10 E-value=10 Score=35.39 Aligned_cols=219 Identities=12% Similarity=0.136 Sum_probs=117.1
Q ss_pred ceeeEEeccCCCcEEEEEecCCcEEEEeCC------CC-eeeEeecc-----CCCCeEEEEEcCCC-----------CcE
Q 010748 268 SVLGLAWNKEFRNILASASADKQVKIWDVA------AG-KCNLTLEH-----HTDKVQAVAWNHHS-----------PQI 324 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~------~~-~~~~~~~~-----h~~~v~~l~~~~~~-----------~~~ 324 (502)
.-+.|+++|. +.+.++....+...+||.. .. ..+.++.. .....+.+.|+... ...
T Consensus 24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 3578999998 4577777777899999986 12 22334331 23467888887543 134
Q ss_pred EEEEeCCCcEEEEecCCCCC---cc-ceEe--ecCCe-eEEEeCC--CCCCEEEEEeCCCcEEEEECCCCCCCCC-----
Q 010748 325 LLSGSFDRSVVMKDARISTH---SG-FKWA--VAADV-ESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPD----- 390 (502)
Q Consensus 325 l~s~s~dg~i~iwd~~~~~~---~~-~~~~--~~~~v-~~v~~~~--~~~~~~~~~~~dg~v~i~d~~~~~~~~~----- 390 (502)
++.++.+|+|.-|...-... .. .... ..+.| ..+++.. .+..+.++--..++|.+||-.-......
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67889999999998543222 11 1111 11222 2344432 2344445556788999998653311000
Q ss_pred --CCCCccceEEecc--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcC------C
Q 010748 391 --STSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE------D 460 (502)
Q Consensus 391 --~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp------d 460 (502)
....-..+.+..- .-.|+-..-.+.. +.=+.|..-|.|-+||+...- .......+.-..-+.|+..| .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l-~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQL-LRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcE-EEEeccCCcccCCceeeeChhhhCCCC
Confidence 0000000000000 0011111222222 223334445789999987542 22222333444566777755 3
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010748 461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 461 ~~~ll~sg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
+. +|+---.||+|.+||..++..+..+..
T Consensus 261 g~-lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 261 GA-LLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CC-eEEeecCCceeEEecCCCCceeeeecC
Confidence 45 566555699999999998887655544
No 441
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.06 E-value=9.7 Score=34.99 Aligned_cols=185 Identities=14% Similarity=0.132 Sum_probs=96.8
Q ss_pred CCCcceeeeecCCCCCCCCCCEEEEecCCC--cEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCccc
Q 010748 190 PAFPLCMAWLDCPLKDREKGNFMAVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD 267 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~s~~~~~la~g~~dg--~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 267 (502)
.+|.-.+.+. .+|.++-+.+.-| .|+.+|+.++.......+- .. ..
T Consensus 44 ~aFTQGL~~~-------~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~---------------------~~--~F-- 91 (264)
T PF05096_consen 44 TAFTQGLEFL-------DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP---------------------PR--YF-- 91 (264)
T ss_dssp T-EEEEEEEE-------ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T---------------------TT------
T ss_pred cccCccEEec-------CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC---------------------cc--cc--
Confidence 4455566653 4677777776665 7999999876543221110 00 01
Q ss_pred ceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccc
Q 010748 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 347 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 347 (502)
--.++...+ .+..-.-.++...+||..+.+.+.++.. .+.=..|+ .++ ..|+.+.....|.++|..+.+....
T Consensus 92 -gEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~ 164 (264)
T PF05096_consen 92 -GEGITILGD--KLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRT 164 (264)
T ss_dssp -EEEEEEETT--EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEE
T ss_pred -ceeEEEECC--EEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCC-CEEEEECCccceEEECCcccceEEE
Confidence 112233332 3444455678899999999999988863 45566776 344 4577777788899999876654332
Q ss_pred eEee-----cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE---------------eccCCCe
Q 010748 348 KWAV-----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---------------HAHDKAV 407 (502)
Q Consensus 348 ~~~~-----~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~---------------~~h~~~v 407 (502)
..-. -..++-+.|.. +.+.+=.-....|...|..++. ....+ .....-.
T Consensus 165 i~V~~~g~pv~~LNELE~i~--G~IyANVW~td~I~~Idp~tG~---------V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 165 IQVTDNGRPVSNLNELEYIN--GKIYANVWQTDRIVRIDPETGK---------VVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp EE-EETTEE---EEEEEEET--TEEEEEETTSSEEEEEETTT-B---------EEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred EEEEECCEECCCcEeEEEEc--CEEEEEeCCCCeEEEEeCCCCe---------EEEEEEhhHhhhcccccccccccCCee
Confidence 2111 12244455542 2222223334445555555541 11111 0113568
Q ss_pred eEEEEcCCCCCEEEEEe
Q 010748 408 CTISYNPLVPNLLATGS 424 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s 424 (502)
+.|++.|....+++||=
T Consensus 234 NGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EeEeEeCCCCEEEEEeC
Confidence 99999998867777763
No 442
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.99 E-value=13 Score=36.29 Aligned_cols=198 Identities=13% Similarity=0.144 Sum_probs=109.9
Q ss_pred CcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcC----CCCcE-EEEEe-CC---CcEEEEecCCCCCccceE
Q 010748 279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH----HSPQI-LLSGS-FD---RSVVMKDARISTHSGFKW 349 (502)
Q Consensus 279 ~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~-l~s~s-~d---g~i~iwd~~~~~~~~~~~ 349 (502)
..+++.....+-+.+||+. |+.+..+. .+.+..+.... .+... |++++ .+ .+|++|-+..........
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4578888888899999986 56666664 23444443321 22121 33333 32 469999876322111111
Q ss_pred --------eecCCeeEEEe--CC-CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCC
Q 010748 350 --------AVAADVESLAW--DP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 350 --------~~~~~v~~v~~--~~-~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
.....+..+|+ ++ .+..++++...+|.+..|-+....... .....++.+.. .+.+-.+...... .
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~--v~~~lVR~f~~-~sQ~EGCVVDDe~-g 220 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK--VSATLVREFKV-GSQPEGCVVDDET-G 220 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS--EEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc--EeeEEEEEecC-CCcceEEEEeccc-C
Confidence 11123555655 44 345577778899999888886321100 00245666654 3467888888766 7
Q ss_pred EEEEEeCCCcEEEEECCCC---CeeEEEEecC--CCCcEEEEEEc--CCC-CcEEEEEeCCCcEEEEECCCCc
Q 010748 419 LLATGSTDKMVKLWDLSNN---QPSCIASRNP--KAGAVFSVAFS--EDS-PFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~---~~~~~~~~~~--~~~~v~~~~~s--pd~-~~ll~sg~~dg~i~vwd~~~~~ 483 (502)
.|+.+-.+.-|.-|+.... ....+....+ ....|-.|++- +++ .|||++.-.+++..||+.....
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 8999988887888887632 2223333322 34567777764 343 5788887778899999987643
No 443
>PLN02153 epithiospecifier protein
Probab=91.96 E-value=7.3 Score=37.79 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=28.8
Q ss_pred CcEEEEECCCCCeeEEEEe---cCCCCcEEEEEEcCCCCcEEEEEeCC--------------CcEEEEECCCCc
Q 010748 427 KMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIWDTLSDA 483 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~spd~~~ll~sg~~d--------------g~i~vwd~~~~~ 483 (502)
..|.+||+.+.+...+... ........++.+ ++. +++.||.. ..|..+|+.+..
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCE-EEEECcccCCccccccccccccccEEEEEcCccE
Confidence 4588999988775444321 111111122222 343 78888852 257788876543
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=7.8 Score=40.50 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=92.9
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceE---eecCC-eeEEEeC
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAAD-VESLAWD 361 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~-v~~v~~~ 361 (502)
+.--.|+|+++ +|+.+.++.-....+-.+.|+.+. -|++...+|++++|++-......... ..... +.|-.|+
T Consensus 61 ~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 61 SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec
Confidence 33456888885 577766665444588899999876 68888999999999987544322111 11222 3444444
Q ss_pred CCCCCEEEEEeCCCcEEEE-ECCCCCCCCCCCCCccceEEec---cCCCeeEEEEcCCC--CCEEEEEe-CCCcEEEEEC
Q 010748 362 PHAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLV--PNLLATGS-TDKMVKLWDL 434 (502)
Q Consensus 362 ~~~~~~~~~~~~dg~v~i~-d~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~~--~~~l~t~s-~dg~i~vwd~ 434 (502)
+ + +++-..+|.+.+- +.... ..+++.. ..-+-+|-...+.+ ...++-.. ..+ ..++-.
T Consensus 138 -~-G--Vavlt~~g~v~~i~~~~~~----------~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~ 202 (829)
T KOG2280|consen 138 -N-G--VAVLTVSGQVILINGVEEP----------KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQV 202 (829)
T ss_pred -C-c--eEEEecCCcEEEEcCCCcc----------hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccce
Confidence 2 3 4444455555443 33221 1111111 01111121111111 01111111 111 112222
Q ss_pred CCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748 435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 435 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~ 486 (502)
..... ....+....+.+..+..||++++ ||--...|.|.+-++...+.+.
T Consensus 203 ~~~~~-q~~~~~~~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~~~lc 252 (829)
T KOG2280|consen 203 EESRV-QLHALSWPNSSVVKISVSPNRRF-LALYTETGKIWVVSIDLSQILC 252 (829)
T ss_pred ecccc-cccccCCCCceEEEEEEcCCcce-EEEEecCCcEEEEecchhhhhh
Confidence 22111 12222222466888999999996 8888889999888876655543
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.80 E-value=12 Score=35.36 Aligned_cols=176 Identities=9% Similarity=0.068 Sum_probs=93.3
Q ss_pred cEEEEeCCCCeeeEeecc------CCCCeEEEEEcCCCC-----cEEEEEeCCCcEEEEecCCCCCccc-----------
Q 010748 290 QVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSP-----QILLSGSFDRSVVMKDARISTHSGF----------- 347 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~-----~~l~s~s~dg~i~iwd~~~~~~~~~----------- 347 (502)
.|.+||+.+++.++++.- ..+.+..+.+..... ...++=+..+.|.++|+.+++....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688999999998887742 235677777766331 2334444456899999987653221
Q ss_pred --------eEeecCCeeEEEeCC---CCCCEEEEEeCCC-cEEEEECCCCCCCCCCCC---CccceEEeccCCCeeEEEE
Q 010748 348 --------KWAVAADVESLAWDP---HAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTS---QQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 348 --------~~~~~~~v~~v~~~~---~~~~~~~~~~~dg-~v~i~d~~~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~ 412 (502)
.+.....+..++.+| ++ ..++-+.-.+ .++--............. ...+..+.........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 112233456666655 33 2444443322 232222211110000000 0112222222246778889
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCC----CCeeEEEEecCCCCcEEEEEEcC--CCCcEEEEE
Q 010748 413 NPLVPNLLATGSTDKMVKLWDLSN----NQPSCIASRNPKAGAVFSVAFSE--DSPFVLAIG 468 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~~~~sp--d~~~ll~sg 468 (502)
++.| .++++--..+.|..|+... .....+..-......+..+.+.+ ++. |.+.+
T Consensus 194 D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s 253 (287)
T PF03022_consen 194 DPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS 253 (287)
T ss_dssp ETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred CCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEE
Confidence 9977 8888888899999999987 22223333332256789999999 776 44443
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.72 E-value=15 Score=36.42 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC
Q 010748 312 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391 (502)
Q Consensus 312 v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~ 391 (502)
...+..++++ .+++.+..-..++-||--...=..........+..+.|.+++. +++ .+..|.+.. ....+....
T Consensus 241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l-~g~~G~l~~-S~d~G~~~~-- 314 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWL-LTRGGGLYV-SKGTGLTEE-- 314 (398)
T ss_pred eeeEEEcCCC-CEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEE-EeCCceEEE-ecCCCCccc--
Confidence 3444556665 4444444333233333221100111223355688899988765 444 445666543 222221000
Q ss_pred CCCccceEEec--cCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCcEEEEEEcCCCCcEEEEE
Q 010748 392 TSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIG 468 (502)
Q Consensus 392 ~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll~sg 468 (502)
......... ....+..+.|.+++ . ++.++..|.+.... ..++. ........-...++.+.|.+++. .++ .
T Consensus 315 --~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~-~ 387 (398)
T PLN00033 315 --DFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFV-L 387 (398)
T ss_pred --ccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEE-E
Confidence 001111111 22358889898765 4 55566678666654 33332 12211233346788999988776 354 5
Q ss_pred eCCCcEEEE
Q 010748 469 GSKGKLEIW 477 (502)
Q Consensus 469 ~~dg~i~vw 477 (502)
|.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 678877655
No 447
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=11 Score=34.84 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=96.4
Q ss_pred ccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeecc-CC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~-h~-~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 343 (502)
.+-+..+.++.+ +...+..+.-++|.|+.+...-..+.. .. +--.++.. .| +++.++..+.-+.+.|+..++
T Consensus 86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCCCC
Confidence 456777888765 677777778899999987643332211 12 33344444 44 788888878888899998877
Q ss_pred CccceEee---cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCC-CeeEEEEcCCCCCE
Q 010748 344 HSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNL 419 (502)
Q Consensus 344 ~~~~~~~~---~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~~~~ 419 (502)
.+...-.. ......++.+- ++.+++..++-+.+.|+... ..+++.-.-..+ .+.++..+++. .+
T Consensus 160 sP~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp--------~sPvli~~~n~g~g~~sv~vsdnr-~y 227 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNP--------HSPVLIGSYNTGPGTYSVSVSDNR-AY 227 (370)
T ss_pred CceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCC--------CCCeEEEEEecCCceEEEEecCCe-eE
Confidence 65533222 22335666653 36777888999999999987 345544443344 78888888753 33
Q ss_pred EEEEeCCCcEEEEECCCCC
Q 010748 420 LATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~~~ 438 (502)
++. ...| +.+-|..+.+
T Consensus 228 ~vv-y~eg-vlivd~s~~s 244 (370)
T COG5276 228 LVV-YDEG-VLIVDVSGPS 244 (370)
T ss_pred EEE-cccc-eEEEecCCCC
Confidence 333 3333 5566665543
No 448
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.14 E-value=15 Score=35.31 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=15.7
Q ss_pred CEEEEEeCCCc----EEEEECCCCCee
Q 010748 418 NLLATGSTDKM----VKLWDLSNNQPS 440 (502)
Q Consensus 418 ~~l~t~s~dg~----i~vwd~~~~~~~ 440 (502)
.+.+.|+.++. +.+||+.+.+..
T Consensus 173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 173 ELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEcCCCCccccceEEEecCCCeeE
Confidence 67777776543 568898887643
No 449
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.06 E-value=11 Score=36.90 Aligned_cols=149 Identities=7% Similarity=0.029 Sum_probs=73.0
Q ss_pred CCeEEEEEcCCCCcEEEEEe-----------CCC-cEEEEecCCCCCc----cceEeecCCeeEEEeCCCCCCEEEEEeC
Q 010748 310 DKVQAVAWNHHSPQILLSGS-----------FDR-SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 310 ~~v~~l~~~~~~~~~l~s~s-----------~dg-~i~iwd~~~~~~~----~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 373 (502)
.....|+|.++| +++++-. ..+ .|.+++-....-. ......-...+.+++.+++ ++++..
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVATP 89 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEeCC
Confidence 455678888888 6555532 123 6666654332211 1111223345788888754 444444
Q ss_pred CCcEEEEECCCCCCCCCCCCCccceE-Eec----cCCCeeEEEEcCCCCCEEEEEeCC-------------------CcE
Q 010748 374 DGTIKGFDIRTAKSDPDSTSQQSSFT-LHA----HDKAVCTISYNPLVPNLLATGSTD-------------------KMV 429 (502)
Q Consensus 374 dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~----h~~~v~~l~~sp~~~~~l~t~s~d-------------------g~i 429 (502)
....++.|........ . ....+.. +.. +......+.|.|+| .+.++-+.. |.|
T Consensus 90 ~~i~~~~d~~gdg~ad-~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 90 PDILFLRDKDGDDKAD-G-EREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred CeEEEEeCCCCCCCCC-C-ccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceE
Confidence 4333333443221000 0 0111211 222 23457889999998 555544411 345
Q ss_pred EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe
Q 010748 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~ 469 (502)
.-++...++.. +. ..++ .....++|+|+|. ++++-.
T Consensus 167 ~r~~pdg~~~e-~~-a~G~-rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKLR-VV-AHGF-QNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EEEecCCCeEE-EE-ecCc-CCCccceECCCCC-EEEEcc
Confidence 55555554421 11 1222 3356899999998 465433
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.71 E-value=3.6 Score=37.01 Aligned_cols=86 Identities=9% Similarity=0.020 Sum_probs=55.0
Q ss_pred EeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-----eccCCCeeEEEEcCCCCCEEEEE
Q 010748 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 349 ~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~l~t~ 423 (502)
.....++..+... + .++++-+.+|.+++||+.+.+......+..++... ......|..+.++.+| .-|++-
T Consensus 9 i~Lgs~~~~l~~~--~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l 84 (219)
T PF07569_consen 9 IVLGSPVSFLECN--G-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL 84 (219)
T ss_pred EecCCceEEEEeC--C-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEE
Confidence 3444555555543 3 37888999999999999987543222111111111 0356778999999877 666665
Q ss_pred eCCCcEEEEECCCCCe
Q 010748 424 STDKMVKLWDLSNNQP 439 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~ 439 (502)
+ +|..+.|+..-+..
T Consensus 85 s-ng~~y~y~~~L~~W 99 (219)
T PF07569_consen 85 S-NGDSYSYSPDLGCW 99 (219)
T ss_pred e-CCCEEEecccccee
Confidence 5 57889998876654
No 451
>PLN02153 epithiospecifier protein
Probab=90.65 E-value=17 Score=35.20 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=14.4
Q ss_pred CcEEEEEecC-----CcEEEEeCCCCe
Q 010748 279 RNILASASAD-----KQVKIWDVAAGK 300 (502)
Q Consensus 279 ~~~l~sgs~d-----g~v~vwd~~~~~ 300 (502)
..+++.|+.+ ..+.+||+.+.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCE
Confidence 4466677653 357889987754
No 452
>PLN02193 nitrile-specifier protein
Probab=90.28 E-value=9.7 Score=38.83 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=35.3
Q ss_pred CEEEEEeCC----CcEEEEECCCCCeeEEEEec--CCCCcEEEEEEcCCCCcEEEEEeCC--------------CcEEEE
Q 010748 418 NLLATGSTD----KMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIW 477 (502)
Q Consensus 418 ~~l~t~s~d----g~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~ll~sg~~d--------------g~i~vw 477 (502)
.+++.++.+ ..+.+||+.+.+...+.... .......+++. -++. +++.||.. ..+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKH-IVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCE-EEEECCccCCccccccCccceeccEEEE
Confidence 666666655 45899999887754443221 11111122222 2344 77788853 247888
Q ss_pred ECCCCc
Q 010748 478 DTLSDA 483 (502)
Q Consensus 478 d~~~~~ 483 (502)
|+.+..
T Consensus 408 D~~t~~ 413 (470)
T PLN02193 408 DTETLQ 413 (470)
T ss_pred EcCcCE
Confidence 887653
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.25 E-value=8.6 Score=31.15 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=66.1
Q ss_pred EEeccCCCcEEEEEecCCcEEEEeCCCCe--------eeEeeccCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEec
Q 010748 272 LAWNKEFRNILASASADKQVKIWDVAAGK--------CNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDA 339 (502)
Q Consensus 272 l~~~~~~~~~l~sgs~dg~v~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~~----~~~~l~s~s~dg~i~iwd~ 339 (502)
-.|....+ .|++++.-|.|.|++..... .++.+. ....|++|+-.+- +...|+.|+ ...|..||+
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34555533 67788888999999876432 334443 4667888765442 235566655 567999999
Q ss_pred CCCCCccceEeecCCeeEEEeCCCC--CCEEEEEeCCCcEEEEECCCC
Q 010748 340 RISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~~dg~v~i~d~~~~ 385 (502)
....-.. ....+..+.++.+-.-+ ..-++..+.+..|.-||....
T Consensus 81 ~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred ccCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 8766443 34455677777662211 123444444667777776543
No 454
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.25 E-value=20 Score=35.32 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=24.3
Q ss_pred EEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCC------cEEEEECCC
Q 010748 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLS 481 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg------~i~vwd~~~ 481 (502)
+.+||+.+.+...+..+....... .+..-++. ++++||... .|.++....
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~--~av~~~~~-iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYG--VSVSWNNG-VLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred hheEEecCCcccccCcCCCCccce--EEEEeCCE-EEEEcCCCCCCcEeeeEEEEEEcC
Confidence 457888876643332222111112 22333444 677787642 455555444
No 455
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.06 E-value=19 Score=34.88 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=20.6
Q ss_pred cEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCC
Q 010748 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~d 471 (502)
.+.+||..+.+...+..+... .-...+..-++. +++.||.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~~~~~-iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQG--LAYGVSVSWNNG-VLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCC--ceeeEEEEcCCE-EEEEeccC
Confidence 467888877654333322211 112223333454 67778765
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=13 Score=41.52 Aligned_cols=154 Identities=12% Similarity=0.141 Sum_probs=86.9
Q ss_pred EeCCCcEEEEecCCCCCccceEeecCCeeEEEe--------CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceE
Q 010748 328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAW--------DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399 (502)
Q Consensus 328 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~--------~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 399 (502)
.+.|+.+.+|+..+.......-.....|..|.. .|.=.+++++++ --.|.++-+.-.............++
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccccccee
Confidence 345889999999986555444455555555543 232233444443 33455554432211111111122244
Q ss_pred EeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEE--ECCCC-------C------------eeEEEEec-CCCCcEEEEEE
Q 010748 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW--DLSNN-------Q------------PSCIASRN-PKAGAVFSVAF 457 (502)
Q Consensus 400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw--d~~~~-------~------------~~~~~~~~-~~~~~v~~~~~ 457 (502)
+......|+++....+| +.+++ |.||.|+=. ....+ + |. +..+. .+..+|..+..
T Consensus 174 i~~dg~~V~~I~~t~nG-RIF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENG-RIFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCC-cEEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEe
Confidence 44556678899876666 55555 456644321 11111 0 11 22223 56679999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748 458 SEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 458 spd~~~ll~sg~~dg~i~vwd~~~~~~~~ 486 (502)
..... +|.+-+..|+|.+|++.......
T Consensus 251 D~SR~-IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 251 DNSRN-ILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred ccccc-eeeeeccCceEEEEEccCCCccc
Confidence 88776 79999999999999998844433
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.38 E-value=2 Score=44.89 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=46.5
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCC---CcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEecc---CCCc
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVID---EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRN 280 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~ 280 (502)
++...|+++..||.+......... ........+........ .+-..........-...+..++++. ++..
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSL----SGLFPWSYRGDNSSSSVAASLAVSSSEINDDT 231 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCC----TTTS-TT---SSSS---EEEEEE-----ETTT
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhh----hCcCCcccccCCCCCCccceEEEecceeCCCC
Confidence 367788888999999888876522 11111111100000000 0000000000111234455555555 2367
Q ss_pred EEEEEecCCcEEEEeCCCCeeeEeec
Q 010748 281 ILASASADKQVKIWDVAAGKCNLTLE 306 (502)
Q Consensus 281 ~l~sgs~dg~v~vwd~~~~~~~~~~~ 306 (502)
+|++.+.|+++|+||+.+++++.++.
T Consensus 232 ~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 232 FLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEec
Confidence 99999999999999999999976653
No 458
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.96 E-value=2.5 Score=37.97 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=47.9
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEe
Q 010748 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
..+++|++-+.+|.+++||+.....+.+...+...-. ... ..-......|..+.++.+|. -|++-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~------------~~~-~~~~~~~~~i~~~~lt~~G~-PiV~ls 85 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLN------------SSP-VSDKSSSPNITSCSLTSNGV-PIVTLS 85 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhc------------ccc-cccCCCCCcEEEEEEcCCCC-EEEEEe
Confidence 3688999999999999999987665544311110000 000 00004567788899987743 454444
Q ss_pred cCCcEEEEeCCCC
Q 010748 287 ADKQVKIWDVAAG 299 (502)
Q Consensus 287 ~dg~v~vwd~~~~ 299 (502)
+|..+.|+..-+
T Consensus 86 -ng~~y~y~~~L~ 97 (219)
T PF07569_consen 86 -NGDSYSYSPDLG 97 (219)
T ss_pred -CCCEEEeccccc
Confidence 578899986543
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.94 E-value=11 Score=30.55 Aligned_cols=120 Identities=12% Similarity=0.157 Sum_probs=69.6
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCC----CCCEEEEEeCCCcEEEE
Q 010748 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL----VPNLLATGSTDKMVKLW 432 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~t~s~dg~i~vw 432 (502)
.-.|....+ .|++++.-|.|.+++.......... ....+..+ .-...|++++-.+- ....|+.|+. ..+..|
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaY 78 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY 78 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence 345666555 6888888999999987654321110 01223333 34566777765542 3356777665 569999
Q ss_pred ECCCCCeeEEEEecCCCCcEEEEEEc---C-CCCcEEEEEeCCCcEEEEECCCCccc
Q 010748 433 DLSNNQPSCIASRNPKAGAVFSVAFS---E-DSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~s---p-d~~~ll~sg~~dg~i~vwd~~~~~~~ 485 (502)
|+..+.- ++....+ ..|.++.+- . ..+ +++ .|.+..|.-||....+..
T Consensus 79 DV~~N~d--~Fyke~~-DGvn~i~~g~~~~~~~~-l~i-vGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 79 DVENNSD--LFYKEVP-DGVNAIVIGKLGDIPSP-LVI-VGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred EcccCch--hhhhhCc-cceeEEEEEecCCCCCc-EEE-ECceEEEEEeCCCCcEEE
Confidence 9988763 3333322 446666652 2 234 344 455667877776655543
No 460
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.86 E-value=25 Score=38.31 Aligned_cols=69 Identities=16% Similarity=0.021 Sum_probs=48.2
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEee----c-----------c----CCCCeEEEEEcCCCCcEE
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL----E-----------H----HTDKVQAVAWNHHSPQIL 325 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~----~-----------~----h~~~v~~l~~~~~~~~~l 325 (502)
....|.++....- +.+++.+-.||+|.++|-.+.+.+... . | +-..+..++|+|.+ ..+
T Consensus 258 ~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~ 335 (753)
T PF11635_consen 258 LNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSL 335 (753)
T ss_pred cCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceE
Confidence 3466888887766 558999999999999998766443322 0 0 11234457899998 777
Q ss_pred EEEeCCCcEE
Q 010748 326 LSGSFDRSVV 335 (502)
Q Consensus 326 ~s~s~dg~i~ 335 (502)
+.-..+|.+.
T Consensus 336 v~~~~~~~~~ 345 (753)
T PF11635_consen 336 VQIDEDGKTK 345 (753)
T ss_pred EEEecCCCce
Confidence 7888888765
No 461
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.86 E-value=13 Score=35.59 Aligned_cols=104 Identities=7% Similarity=0.055 Sum_probs=47.0
Q ss_pred CcEEEEEecC-----CcEEEEeCCCCee---eEeeccCCCCe--EEEEEcCCCCcEEEEEeC-----CCcEEEEecCCCC
Q 010748 279 RNILASASAD-----KQVKIWDVAAGKC---NLTLEHHTDKV--QAVAWNHHSPQILLSGSF-----DRSVVMKDARIST 343 (502)
Q Consensus 279 ~~~l~sgs~d-----g~v~vwd~~~~~~---~~~~~~h~~~v--~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~ 343 (502)
..+++.|+.+ ..+..+|+.+.+. ...+..-..+. .+++.. ++ .+.+.|+. ...+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence 3466667654 3566777766543 12221111111 122222 23 56666664 2357788877643
Q ss_pred Cccce-EeecCCeeEEEeCCCCCCEEEEEeCCC----cEEEEECCCC
Q 010748 344 HSGFK-WAVAADVESLAWDPHAEHSFVVSLEDG----TIKGFDIRTA 385 (502)
Q Consensus 344 ~~~~~-~~~~~~v~~v~~~~~~~~~~~~~~~dg----~v~i~d~~~~ 385 (502)
=.... ..........+... +..+++.|+.++ .+.+||..+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence 21110 01001111111111 234677776554 2567887764
No 462
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.85 E-value=12 Score=36.71 Aligned_cols=145 Identities=6% Similarity=0.058 Sum_probs=86.3
Q ss_pred EeCCCcEEEEecCCCCC---ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC
Q 010748 328 GSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404 (502)
Q Consensus 328 ~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~ 404 (502)
+...|.+.-|-+..+.. +..-....++|.++.|++++. .+++-..+..|.+++....... .......+..+
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~-----l~~~~~ck~k~ 112 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ-----LEYTQECKTKN 112 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh-----hHHHHHhccCc
Confidence 33445555555544332 222223467899999999865 8899999999999998543110 11222233345
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCC
Q 010748 405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSD 482 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~-~dg~i~vwd~~~~ 482 (502)
..|.++.|+.+. -+|..+..| +-+|-+...+. .+.....|...|.-..|+++.+.+|.+.+ ..+++.=+-++++
T Consensus 113 ~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 113 ANILGFCWTSST--EIAFITDQG-IEFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ceeEEEEEecCe--eEEEEecCC-eEEEEEchhhh-hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 568899998753 455555444 77776654331 23344556667888889998875555544 3344444444443
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.42 E-value=3.7 Score=35.35 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=26.8
Q ss_pred cceeeEEeccCC-----CcEEEEEecCCcEEEEeCCC
Q 010748 267 DSVLGLAWNKEF-----RNILASASADKQVKIWDVAA 298 (502)
Q Consensus 267 ~~V~~l~~~~~~-----~~~l~sgs~dg~v~vwd~~~ 298 (502)
..|..++|||.| +.+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999953 56899999999999998653
No 464
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.23 E-value=43 Score=36.41 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=42.0
Q ss_pred cEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeE-------------EEEEcC--CCCcEEEEEeC----------CCcE
Q 010748 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-------------AVAWNH--HSPQILLSGSF----------DRSV 334 (502)
Q Consensus 280 ~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~~l~s~s~----------dg~i 334 (502)
..++.++.|+.|.-.|..+|+.+..+.. .+.|. .+.-.| .+ ..+++|+. +|.|
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEE
Confidence 3788889999999999999998877642 22221 011111 12 35666643 6889
Q ss_pred EEEecCCCCCc
Q 010748 335 VMKDARISTHS 345 (502)
Q Consensus 335 ~iwd~~~~~~~ 345 (502)
+-+|.++++..
T Consensus 339 ~A~Da~TGkl~ 349 (764)
T TIGR03074 339 RAFDVNTGALV 349 (764)
T ss_pred EEEECCCCcEe
Confidence 99999987753
No 465
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.16 E-value=2.6 Score=25.72 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=22.9
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEE
Q 010748 447 PKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIW 477 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~ll~sg~~d--g~i~vw 477 (502)
...+.-....|+|||++++.++... |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445678899999999888887777 777776
No 466
>PLN02193 nitrile-specifier protein
Probab=87.69 E-value=35 Score=34.82 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=48.0
Q ss_pred CcEEEEEecC-----CcEEEEeCCCCeeeE--eec--cCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEecCCCCC
Q 010748 279 RNILASASAD-----KQVKIWDVAAGKCNL--TLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTH 344 (502)
Q Consensus 279 ~~~l~sgs~d-----g~v~vwd~~~~~~~~--~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~ 344 (502)
..+++.|+.+ ..+.+||+.+.+-.. .+. .....-.++.. -.+ .+++.|+.++ .+..||+.+.+-
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCEE
Confidence 3466666654 358889988764322 111 01111112222 233 6777777653 356677665321
Q ss_pred ccce-----EeecCCeeEEEeCCCCCCEEEEEeCC----CcEEEEECCCC
Q 010748 345 SGFK-----WAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTA 385 (502)
Q Consensus 345 ~~~~-----~~~~~~v~~v~~~~~~~~~~~~~~~d----g~v~i~d~~~~ 385 (502)
.... .........+.+ . ..+++.++.+ ..+.+||+.+.
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~-gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--Q-GKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--C-CcEEEEECCCCCccCceEEEECCCC
Confidence 1100 000111122222 2 3366666544 45888998764
No 467
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.60 E-value=26 Score=33.28 Aligned_cols=242 Identities=15% Similarity=0.068 Sum_probs=113.8
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEecC
Q 010748 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~d 288 (502)
+++|+.|+.+|...+. +.... ..+ ....+...|+++...+...-+++.++..
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~-~~~--------------------------~kl~~~~~v~q~~v~~~~~lLi~Lsgk~ 64 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQP-GTL--------------------------EKLIGRRSVTQIWVLEENNVLLMISGKK 64 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCC-CCe--------------------------EEecCcCceEEEEEEhhhCEEEEEeCCc
Confidence 4799999999866554 54210 001 1113567899999998844334444444
Q ss_pred CcEEEEeCCCCee---------------eEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCC--CCccce---
Q 010748 289 KQVKIWDVAAGKC---------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFK--- 348 (502)
Q Consensus 289 g~v~vwd~~~~~~---------------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~--- 348 (502)
..++++++..-.. ....-.|................++++....+|.++....+ +.....
T Consensus 65 ~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~ 144 (302)
T smart00036 65 PQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKF 144 (302)
T ss_pred ceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccc
Confidence 4599999843221 01122344434444444333245566666777777654332 111110
Q ss_pred ---EeecCCeeEEEeCCC-CCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC-CCeeEEEEcCCCCCEEEEE
Q 010748 349 ---WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 349 ---~~~~~~v~~v~~~~~-~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~ 423 (502)
.....++..+..+++ ....+.+|+..+...++++......... ....+...... .++..+.+.. + .+|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d--~sl~~~~~~~~~~p~~i~~l~~-~-e~Llc- 219 (302)
T smart00036 145 LFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED--LSLPFLSEETSLKPISVVQVPR-D-EFLLC- 219 (302)
T ss_pred cccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc--ccccccccccccCceEEEEECC-C-eEEEE-
Confidence 011223333322332 1235666766433444444321000000 00001111111 4555555543 3 44443
Q ss_pred eCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
- +....+-|....+......+. -.+...++++.. +|+++. + +..|.|+++.++..++.+-
T Consensus 220 ~-~~~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~~--pyll~~-~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 220 Y-DEFGVFVNLYGKRRSRNPILH-WEFMPESFAYHS--PYLLAF-H-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred E-CcEEEEEeCCCCccccceEEE-cCCcccEEEEEC--CEEEEE-c-CCcEEEEECCCCceEEEEe
Confidence 3 333555565541211111221 234456777764 566664 3 4569999999998765543
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.54 E-value=48 Score=36.24 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=75.0
Q ss_pred cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccC----------CCeeEEEEcCCCCCEEE
Q 010748 352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD----------KAVCTISYNPLVPNLLA 421 (502)
Q Consensus 352 ~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~l~~sp~~~~~l~ 421 (502)
..+...++|+|.....|++....|...||++....... ...+.....+. ..-..+.|.++. ..|+
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~----~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lL 219 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK----SSNLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLL 219 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccC----CcceeeccCCCccccCCCcccCcceeeEecCCC-CEEE
Confidence 34577899999888899999999999999992221100 00111111111 233478898876 5555
Q ss_pred EEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEECCC
Q 010748 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~ll~sg~~dg~i~vwd~~~ 481 (502)
.++. ..+.++|+.+...............|..+.-+|..+ ++|+. ....|...++..
T Consensus 220 v~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 220 VCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred EEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 5554 458999998876423222333456788888888722 23332 224688888877
No 469
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=87.49 E-value=0.29 Score=53.26 Aligned_cols=15 Identities=0% Similarity=0.091 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHhccc
Q 010748 21 EPPSKEEIEEIINSGA 36 (502)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (502)
.+ +++.|+.|+.-..
T Consensus 619 ~~-t~~~l~~ll~vl~ 633 (784)
T PF04931_consen 619 HL-TESGLQLLLDVLD 633 (784)
T ss_pred hc-CHHHHHHHHHHhc
Confidence 35 6777777665543
No 470
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.18 E-value=43 Score=35.27 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=86.3
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc---ceEeecCCeeEEEeCC-----CCCCEEEEEeC-C---C
Q 010748 308 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDP-----HAEHSFVVSLE-D---G 375 (502)
Q Consensus 308 h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~v~~v~~~~-----~~~~~~~~~~~-d---g 375 (502)
-.++|-.+.+.+++ ..+++...+|.|.+||........ ....+...+.--+|-+ ++..++++-+. . -
T Consensus 128 l~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 36788999999888 889999999999999993222111 0111111111112222 12334444333 2 2
Q ss_pred cEEEEECCCCCCCCCCCCCccceEEe---ccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC---
Q 010748 376 TIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA--- 449 (502)
Q Consensus 376 ~v~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~--- 449 (502)
+.+++.+... ...+..+. .+........|+-+. +.|+.- .++.|.+|++...+......+..-.
T Consensus 207 ~ykL~~l~~~--------~~~~~El~s~~~e~~~~~~s~f~Y~~-G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~ 276 (670)
T PF10395_consen 207 SYKLISLSNE--------SSSIFELSSTILENFGLEDSKFCYQF-GKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKE 276 (670)
T ss_pred EEEEEEeccC--------CcceEEeehheeccCCcccceEEEeC-CEEEEE-eCCEEEEEEcCCceEEEEEEechhhccc
Confidence 4677777222 13333332 222222222222222 333333 6778999999887644444443111
Q ss_pred -CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010748 450 -GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 450 -~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
..+.++.--...+ +|. +.++.|++.|+.-...+.++-
T Consensus 277 ~~~~vSl~~~s~nR-vLL--s~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 277 SDDLVSLKPPSPNR-VLL--SVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cccceEeecCCCCe-EEE--EcCCEEEEEeehhhhhhhhhh
Confidence 1233333322233 455 356689999997766665444
No 471
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.81 E-value=34 Score=33.82 Aligned_cols=115 Identities=10% Similarity=0.177 Sum_probs=70.4
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeE----eeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~ 340 (502)
..++|.++.|+++ ...||.--.+++|.+.+....+... +-+..+..|....|.... -++..+.. -+-+|-+-
T Consensus 65 d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~-G~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQ-GIEFYQVL 140 (657)
T ss_pred CCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecC-CeEEEEEc
Confidence 4569999999999 6699999999999999974333222 223345568888998764 34444433 35556544
Q ss_pred CCCC-ccceEeecCCeeEEEeCCCCCCEEEEEe-CCCcEEEEECC
Q 010748 341 ISTH-SGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIR 383 (502)
Q Consensus 341 ~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~dg~v~i~d~~ 383 (502)
.... ......+...|.-..|++...-.+++.+ ..+.+.=+-++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence 3322 2223356667888888887654444444 33333334333
No 472
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.12 E-value=37 Score=37.80 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=63.4
Q ss_pred CcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 010748 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 343 (502)
..+++|..++=-. + +|++|.. ..|.||++....-+.-+.--.-++.-....--. ++|+.|..-..|.+.-.....
T Consensus 1095 E~KGtVsavceV~--G-~l~~~~G-qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vk-nlIl~gDV~ksisfl~fqeep 1169 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEVR--G-HLLSSQG-QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVK-NLILAGDVMKSISFLGFQEEP 1169 (1366)
T ss_pred hcccceEEEEEec--c-EEEEccC-cEEEEEEeccCCcceeeEEeccceeEEehhhhh-hheehhhhhhceEEEEEccCc
Confidence 4567777776443 3 5655543 579999994432211111111222222222223 577777777777776665443
Q ss_pred CccceEee---cCCeeEEEeCCCCCC-EEEEEeCCCcEEEEECC
Q 010748 344 HSGFKWAV---AADVESLAWDPHAEH-SFVVSLEDGTIKGFDIR 383 (502)
Q Consensus 344 ~~~~~~~~---~~~v~~v~~~~~~~~-~~~~~~~dg~v~i~d~~ 383 (502)
........ .-.+.++.|--+|.+ .|+++..+++|++|-..
T Consensus 1170 ~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1170 YRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 32222221 234677777666554 47778889998887654
No 473
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=85.69 E-value=47 Score=34.26 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 363 ~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
.....++.+..+|.++...+..... .......+. ....+++.+..+++.+|+.||.-|.=.++.+.......
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~-------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~ 292 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGG-------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEV 292 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEE-------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEE
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCC-------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEE
Confidence 3455899999999999888775410 111222222 45567777776433488888875554444444444445
Q ss_pred EEEecCCCCcEEEEEEcCC----CC------cEEEEEe--CCCcEEEEE
Q 010748 442 IASRNPKAGAVFSVAFSED----SP------FVLAIGG--SKGKLEIWD 478 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd----~~------~ll~sg~--~dg~i~vwd 478 (502)
+..+. .-+||..+++.+. .. .+++++| .+|.+++..
T Consensus 293 ~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 293 LDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp EEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred EEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 55554 5688998888532 11 3555554 356777763
No 474
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.64 E-value=25 Score=31.15 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=64.2
Q ss_pred cEEEEEecCCcEEEEeCC--CCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCC------cEEEE-ecCCC----CCcc
Q 010748 280 NILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMK-DARIS----THSG 346 (502)
Q Consensus 280 ~~l~sgs~dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg------~i~iw-d~~~~----~~~~ 346 (502)
..|+.+...+.|.+|++. ..+...+|.. -+.|..+.++..| .+|+|--.+. .+|+| +.+.. ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 355555666789999998 3456667764 3789999999999 8888764322 45664 22211 1111
Q ss_pred ----------------------ceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 347 ----------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 347 ----------------------~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~ 385 (502)
.......++.+++..|..++ +++|+ ++.+.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEE
Confidence 01122446788888887665 55554 567888887654
No 475
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.47 E-value=39 Score=33.16 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=31.1
Q ss_pred cceeeEEeccCCCcEEEEEecCCcEEEEeCCC-------Ceee-Eeecc----CCCCeEEEEEcCCCCcEEEEEe
Q 010748 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCN-LTLEH----HTDKVQAVAWNHHSPQILLSGS 329 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~-------~~~~-~~~~~----h~~~v~~l~~~~~~~~~l~s~s 329 (502)
...+.|++.++ + +++ ++.....++.+... .+.+ ..+.. +......+.|.|+| .+.++-+
T Consensus 72 ~~p~Gi~~~~~-G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 72 SMVTGLAVAVG-G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CCccceeEecC-C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 34678888887 4 444 44444333445431 1112 22322 13447789999998 5544433
No 476
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.38 E-value=18 Score=40.46 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.7
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCC
Q 010748 413 NPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
++.+ ..++++..||.+.+||...++
T Consensus 243 ~~~~-~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDG-SHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCC-ceEEEEEecCCEEeeecCCCc
Confidence 6666 899999999999999998864
No 477
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.34 E-value=22 Score=37.34 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=27.9
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCC
Q 010748 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD 175 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~ 175 (502)
.++.+.+++-+|.+..++.|+.++ ++.+|.|....
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~---si~lfn~~~r~ 47 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDG---SIILFNFIPRR 47 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCC---cEEEEeecccc
Confidence 356788999999999999999987 56777775443
No 478
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.13 E-value=18 Score=40.52 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=24.9
Q ss_pred cceeeEEeccCCCcEEEEEecCCcEEEEeCC
Q 010748 267 DSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~ 297 (502)
.....++|.|. .+++|.|+..|.|+++-..
T Consensus 36 ~~~~~~afD~~-q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPT-QGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccc-cceEEEEEecccEEEeccc
Confidence 35567788888 6799999999999999754
No 479
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.07 E-value=31 Score=31.76 Aligned_cols=198 Identities=11% Similarity=0.064 Sum_probs=112.8
Q ss_pred cceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCcc
Q 010748 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 346 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 346 (502)
..-..++-.|+ +..-+++...+.|--.|..+|+....--+....-..|..-|++. .-++-+.. .|.-.|-++.....
T Consensus 62 ~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 62 SAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcccceEE
Confidence 34556777888 45788888888888889999987665555566667788888884 33333222 45555554443322
Q ss_pred ceE---eecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEecc-CCCeeEEEEcCCCCCEEEE
Q 010748 347 FKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 347 ~~~---~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t 422 (502)
... ......+...|.+.|. +.+++. .|.---.|..+ ..+..+... ...-..|+..|+| .+-++
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa~----------~~i~vfpaPqG~gpyGi~atpdG-svwya 205 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPAR----------NVISVFPAPQGGGPYGICATPDG-SVWYA 205 (353)
T ss_pred eecccccCCCcccceeeCCCcc-EEEeec-cccceecCccc----------CceeeeccCCCCCCcceEECCCC-cEEEE
Confidence 211 2245678889999865 666654 22211111111 222223222 2345678888988 56666
Q ss_pred EeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
.-.++.|-..|..++....+-...........+--+|.++ +-++-...+.+..+|-..
T Consensus 206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccc
Confidence 5566667777776654323322223223344555566666 455555556666666544
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.47 E-value=25 Score=39.44 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=84.2
Q ss_pred ecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEc-CCCC------cEEEEEeCCCcEEEEecCC----CCCcc----ceEe
Q 010748 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSP------QILLSGSFDRSVVMKDARI----STHSG----FKWA 350 (502)
Q Consensus 286 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~------~~l~s~s~dg~i~iwd~~~----~~~~~----~~~~ 350 (502)
+.|+.+.+|+.+++.....+.+.+..|..+..- |.-+ ++++..+.--.|.++-+.- ..... ....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 557889999999987777777766667666542 2210 2333333344555554332 11111 1111
Q ss_pred e-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCC-------------CCCccceEEe-ccCCCeeEEEEcCC
Q 010748 351 V-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-------------TSQQSSFTLH-AHDKAVCTISYNPL 415 (502)
Q Consensus 351 ~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~-------------~~~~~~~~~~-~h~~~v~~l~~sp~ 415 (502)
. +..|.|+....+|. +|+ ++.||.|+-+-.......... .....+..+. .+..+|..+.+...
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2 44688888666553 454 445664443222211110000 0001123333 56779999999886
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 010748 416 VPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~ 436 (502)
. +++.+-+..|+|.+|++..
T Consensus 254 R-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 R-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred c-ceeeeeccCceEEEEEccC
Confidence 5 8999999999999999987
No 481
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.20 E-value=44 Score=32.72 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=105.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCc---ccceeeEEeccCCCcE-
Q 010748 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH---TDSVLGLAWNKEFRNI- 281 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~- 281 (502)
.|...+++.....+-+.+||++... ++. ...+. -+-...+.+. ++.+
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~-lq~--------------------------~~~Gr~NNVDvrygf~l~--g~~vD 115 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKE-LQS--------------------------LPVGRPNNVDVRYGFPLN--GKTVD 115 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-E-EEE--------------------------E-SS-EEEEEEEEEEEET--TEEEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcE-EEe--------------------------ecCCCcceeeeecceecC--CceEE
Confidence 3556777777888899999997421 111 00011 1222333332 2222
Q ss_pred EEEEec-C---CcEEEEeCC--CCeeeEeecc-------CCCCeEEEEE--cC-CCCcEEEEEeCCCcEEEEecCCCCC-
Q 010748 282 LASASA-D---KQVKIWDVA--AGKCNLTLEH-------HTDKVQAVAW--NH-HSPQILLSGSFDRSVVMKDARISTH- 344 (502)
Q Consensus 282 l~sgs~-d---g~v~vwd~~--~~~~~~~~~~-------h~~~v~~l~~--~~-~~~~~l~s~s~dg~i~iwd~~~~~~- 344 (502)
||.++. + .+|++|-+. ++. +..+.. .-..+..+|+ ++ ++..+++....+|.+..|-+.....
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g 194 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG 194 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred EEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence 444443 2 469999775 343 333321 1123566665 44 3445778888999998888763211
Q ss_pred -----ccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEec--cCCCeeEEEEcC--C
Q 010748 345 -----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNP--L 415 (502)
Q Consensus 345 -----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp--~ 415 (502)
....+...+.+..|....... .++++-++.-|.-|+........ ...+....+ ....|-.|++-. +
T Consensus 195 ~v~~~lVR~f~~~sQ~EGCVVDDe~g-~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~ 269 (381)
T PF02333_consen 195 KVSATLVREFKVGSQPEGCVVDDETG-RLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSD 269 (381)
T ss_dssp SEEEEEEEEEE-SS-EEEEEEETTTT-EEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CC
T ss_pred cEeeEEEEEecCCCcceEEEEecccC-CEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCC
Confidence 233456677899999987654 89999999888888876432100 112222222 345677777643 3
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC
Q 010748 416 VPNLLATGS-TDKMVKLWDLSNN 437 (502)
Q Consensus 416 ~~~~l~t~s-~dg~i~vwd~~~~ 437 (502)
+..+|+.++ .+++..||+....
T Consensus 270 g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 270 GKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp C-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCeEEEEEcCCCCeEEEEecCCC
Confidence 434555555 4788999998763
No 482
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.17 E-value=4.8 Score=24.78 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=23.9
Q ss_pred cCCCcEEEEEecCCcEEEEeCCCCeeeEeecc
Q 010748 276 KEFRNILASASADKQVKIWDVAAGKCNLTLEH 307 (502)
Q Consensus 276 ~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~ 307 (502)
|+++.++++...+++|.++|+.+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 44454566666788999999999888877764
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.09 E-value=8.7 Score=33.07 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=25.9
Q ss_pred CCeeEEEeCCCC-----CCEEEEEeCCCcEEEEECCC
Q 010748 353 ADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRT 384 (502)
Q Consensus 353 ~~v~~v~~~~~~-----~~~~~~~~~dg~v~i~d~~~ 384 (502)
..+.+++|+|.| ..+|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 45788889999999997664
No 484
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.18 E-value=20 Score=37.52 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=48.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEEC
Q 010748 309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382 (502)
Q Consensus 309 ~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~ 382 (502)
...++++.-+|.+ +.++.+..||.|++|+....+... .+....+-..+.|..+| +++.++|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFTNHG---LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeeeccc---eEEEeccchhheeec
Confidence 4567888889998 889999999999999986544322 33344455566666543 666666777666654
No 485
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.85 E-value=47 Score=32.05 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=37.2
Q ss_pred CCeeEEEeCCCC------CCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeC
Q 010748 353 ADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 353 ~~v~~v~~~~~~------~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
..+..+.|.... ..+|++....+.|....+..... ......+ ......+..+++.|+| .++++...
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~ 325 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS------VTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDS 325 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE------EEEEEEECTTSSS-EEEEEEETTS-EEEEEE-T
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC------ccceEEccccCCCCceEEEEcCCC-eEEEEECC
Confidence 345555554321 22455555566777777754310 0111111 2334478999999998 77777667
Q ss_pred CCcEE
Q 010748 426 DKMVK 430 (502)
Q Consensus 426 dg~i~ 430 (502)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 77764
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.56 E-value=43 Score=31.44 Aligned_cols=225 Identities=12% Similarity=0.132 Sum_probs=116.3
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCC---cCccee-cCCcchhhhhhccccCCcccccccccCcccceeeEEeccCC
Q 010748 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDE---VQPHVI-LGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 278 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~---~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 278 (502)
++++|.+.+-++....+...+||.+.... ..++.+ +... .-..-....+.+.|+...
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~-------------------~~~~~~~~PTGiVfN~~~ 88 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP-------------------PPLAAEGTPTGQVFNGSD 88 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC-------------------CCCCCCCCccEEEEeCCC
Confidence 34478888888888889999999862110 011110 0000 000122346666666431
Q ss_pred -----------CcEEEEEecCCcEEEEeCCCCee-----eEeec-cCCCCe-EEEEEc--CCCCcEEEEEeCCCcEEEEe
Q 010748 279 -----------RNILASASADKQVKIWDVAAGKC-----NLTLE-HHTDKV-QAVAWN--HHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 279 -----------~~~l~sgs~dg~v~vwd~~~~~~-----~~~~~-~h~~~v-~~l~~~--~~~~~~l~s~s~dg~i~iwd 338 (502)
...++.++.||+|.-|...-+.. ...+. .....| ..+++. ..+..+.++=-..++|.+||
T Consensus 89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 12467889999999998532221 12222 112333 234443 33434444455689999998
Q ss_pred cCCCCCccc-eE--------------eecCCeeEEEe---CCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE
Q 010748 339 ARISTHSGF-KW--------------AVAADVESLAW---DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 400 (502)
Q Consensus 339 ~~~~~~~~~-~~--------------~~~~~v~~v~~---~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 400 (502)
-.-...... .+ ..-+.-.-|.| .+.. +.=+.|..-|.|-+||+.- ..++++
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G----------~l~~r~ 237 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNG----------QLLRRV 237 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCC----------cEEEEe
Confidence 654322110 00 00001111111 2221 1234445567899999874 445544
Q ss_pred e--ccCCCeeEEEEcCC-----CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC------CCcEEEEEEcC
Q 010748 401 H--AHDKAVCTISYNPL-----VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK------AGAVFSVAFSE 459 (502)
Q Consensus 401 ~--~h~~~v~~l~~sp~-----~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~------~~~v~~~~~sp 459 (502)
. +.-..-+.|+..|. ...+|+---.||+|..||..+++. +-.+... ...++.+.|-.
T Consensus 238 as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~--~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 238 ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ--LGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce--eeeecCCCCCeEEecCeEEeeeCC
Confidence 2 22234466666552 225666666699999999988763 2222221 12467888865
No 487
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.16 E-value=45 Score=36.43 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=43.1
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEEEEEec
Q 010748 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
-|+.|.+|+.+|.+.+|.+.............. ....... -+..+|+-|...+. ..++ -...
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~--------------~~~~~~~--~~kk~i~~l~~~~~-~~~l-l~l~ 86 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTE--------------TVKFEKE--FSKKPINKLLVCAS-LELL-LILS 86 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcc--------------hhHHhhh--hccchhHHHhhcch-hcch-heec
Confidence 489999999999999999864322111100000 0000111 12567777777665 2233 3344
Q ss_pred CCcEEEEeCCCCee
Q 010748 288 DKQVKIWDVAAGKC 301 (502)
Q Consensus 288 dg~v~vwd~~~~~~ 301 (502)
|+.|.++++.+-+.
T Consensus 87 dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 87 DSQIAVHKLPELEP 100 (877)
T ss_pred CCcceeeecCcccc
Confidence 67788888776554
No 488
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.15 E-value=5.9 Score=42.28 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=44.6
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEEEEEcC--------------CCCcEEEEEeCC
Q 010748 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE--------------DSPFVLAIGGSK 471 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp--------------d~~~ll~sg~~d 471 (502)
.-..++.+|.| .+.|....=|.|.+.|+...... ....+... .++.|-+ -..++.+-+-..
T Consensus 323 ~ge~lslSP~g-tlAAVTD~lgRVlLlDta~~ivv--r~wKGYRD--Asc~fv~vkek~~~s~~~~sRvAlFLvIyAPRr 397 (1244)
T KOG2727|consen 323 KGEKLSLSPSG-TLAAVTDSLGRVLLLDTAALIVV--RLWKGYRD--ASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRR 397 (1244)
T ss_pred ccceeeeCCCc-cEEEEecccCcEEEEehhhhhHH--HHhccccc--ceeEEEEcccccCCCccCcCceeEEEEEecccc
Confidence 34567889987 77777777788989888664321 11111111 0111211 012344455667
Q ss_pred CcEEEEECCCCccccc
Q 010748 472 GKLEIWDTLSDAGISN 487 (502)
Q Consensus 472 g~i~vwd~~~~~~~~~ 487 (502)
|.+-||.+.+|..+..
T Consensus 398 giLEVW~~q~gpRV~A 413 (1244)
T KOG2727|consen 398 GILEVWQMQTGPRVLA 413 (1244)
T ss_pred cHHHHHHhccCCeEEE
Confidence 8888888888877644
No 489
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=81.94 E-value=55 Score=32.17 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=100.9
Q ss_pred EEEEeCCCCeeeEeecc--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCE-
Q 010748 291 VKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS- 367 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~- 367 (502)
|.+.| +.+..+..+++ ....|.++.|..+- -+++|--.-.-+.+.|+..++.+.......-+-.+--.+|-|.+.
T Consensus 408 vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~ 485 (603)
T COG4880 408 VYILD-ENLNVVGKLTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL 485 (603)
T ss_pred eEEEc-CCCcEEEEEeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence 44444 34455666654 35689999998776 667776666778899999888776555444444444566766554
Q ss_pred EEEEeCCCc--EEEEECCCCCCCCCCCCCccceEEeccCCC----eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010748 368 FVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKA----VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 368 ~~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
+-+|..+|. |.+||+........ .....+..-=++ -.++.|.|...-+++-+...|. ++-+..+. .
T Consensus 486 lGvG~~~g~vKiSLFdiSdl~~PkE----v~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~--k 557 (603)
T COG4880 486 LGVGAYQGGVKISLFDISDLAAPKE----VSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGS--K 557 (603)
T ss_pred EEeecccCCceEEEEeccCCCCchh----hhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCc--e
Confidence 446666775 56788876532111 001111100000 1234455554344455555555 44444442 3
Q ss_pred EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010748 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~~~ 486 (502)
+.....|...+...-|..|- +...|++ .+.++|-.+.+.+.
T Consensus 558 l~k~~e~k~na~RA~fi~dy--lY~vg~~--ev~~ldenswe~Vg 598 (603)
T COG4880 558 LRKRAERKLNADRAFFIKDY--LYLVGGN--EVWKLDENSWEVVG 598 (603)
T ss_pred eeehhhhcccceeeEEecce--EEEeccc--eeEEeccchHhhhh
Confidence 44444566667677777664 3444443 46666665555544
No 490
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=81.62 E-value=43 Score=30.75 Aligned_cols=73 Identities=7% Similarity=0.027 Sum_probs=44.9
Q ss_pred CCCeeEEEEcC------CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCcEEE-EEEcCCCCcEEEEEeCCCcEEE
Q 010748 404 DKAVCTISYNP------LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 404 ~~~v~~l~~sp------~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-~~~spd~~~ll~sg~~dg~i~v 476 (502)
...|+|++--. +....|+.|+..|.|.|.|...........+..-...|.+ -.|. ...|.|++++.||.|++
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~d-evdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYD-EVDYRIVVACRDGKIYT 254 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeee-ccceEEEEEeCCCEEEE
Confidence 34577775432 3457899999999999999887764333333322221211 1222 14456888899998876
Q ss_pred E
Q 010748 477 W 477 (502)
Q Consensus 477 w 477 (502)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 491
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.15 E-value=33 Score=33.79 Aligned_cols=17 Identities=24% Similarity=0.136 Sum_probs=9.9
Q ss_pred EEEEecCCcEEEEeCCC
Q 010748 282 LASASADKQVKIWDVAA 298 (502)
Q Consensus 282 l~sgs~dg~v~vwd~~~ 298 (502)
++.|.....+.++|+..
T Consensus 43 v~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 43 VGLGSAGTSWYKLDLNA 59 (376)
T ss_pred EEeCCCCCeEEEEECCC
Confidence 33444455677888753
No 492
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.78 E-value=51 Score=30.46 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=118.3
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCCcCcceecCCcchhhhhhccccCCcccccccccCcccceeeEEeccCCCcEE
Q 010748 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
++..++|..-.++...+.|--.|-.+++... ...+....-..|..-|++...+
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~---------------------------ypLg~Ga~Phgiv~gpdg~~Wi 119 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVET---------------------------YPLGSGASPHGIVVGPDGSAWI 119 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEE---------------------------EecCCCCCCceEEECCCCCeeE
Confidence 3446778777777766666665655433211 1112233344566677755333
Q ss_pred EEEecCCcEEEEeCCCCeeeE---eeccCCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEecCCCCCccceEe
Q 010748 283 ASASADKQVKIWDVAAGKCNL---TLEHHTDKVQAVAWNHHSPQILLSGSFD---------RSVVMKDARISTHSGFKWA 350 (502)
Q Consensus 283 ~sgs~dg~v~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~ 350 (502)
.=++. -|.-.|-++....+ ....-........|.+.| ++-+++... +.|++|+.-
T Consensus 120 td~~~--aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaP---------- 186 (353)
T COG4257 120 TDTGL--AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAP---------- 186 (353)
T ss_pred ecCcc--eeEEecCcccceEEeecccccCCCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccC----------
Confidence 22222 34445554443211 123334567788899988 777777521 223333322
Q ss_pred ecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEE-eccCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010748 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 351 ~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
.......++..|+|+ +.++......|...|..... ..+... .........+.-+|.+ ..-+|....+.+
T Consensus 187 qG~gpyGi~atpdGs-vwyaslagnaiaridp~~~~--------aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l 256 (353)
T COG4257 187 QGGGPYGICATPDGS-VWYASLAGNAIARIDPFAGH--------AEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSL 256 (353)
T ss_pred CCCCCcceEECCCCc-EEEEeccccceEEcccccCC--------cceecCCCcccccccccccCccC-cEEEeccCCcee
Confidence 233456788889877 66666667777777776652 111111 1112334455556666 666666667778
Q ss_pred EEEECCCCCeeEEEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010748 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~ 480 (502)
..||..... -..+.+.+....-.++.....++ +-.+--..|.|.-+|-.
T Consensus 257 ~rfdPs~~s-W~eypLPgs~arpys~rVD~~gr-VW~sea~agai~rfdpe 305 (353)
T COG4257 257 HRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGR-VWLSEADAGAIGRFDPE 305 (353)
T ss_pred eEeCccccc-ceeeeCCCCCCCcceeeeccCCc-EEeeccccCceeecCcc
Confidence 888776654 23344444444455555555554 22222223444444443
No 493
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.56 E-value=43 Score=29.54 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=57.7
Q ss_pred CcEEEEEecCC--cEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCccceEeecCCee
Q 010748 279 RNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE 356 (502)
Q Consensus 279 ~~~l~sgs~dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 356 (502)
++++.+.+.-| .|++||+.+++.+.+-.-....+..=-...-+..+..-.-.+|....+|.++.+... .+...+.-.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-~~~y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-RFSYEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-ccccCCcce
Confidence 45676665533 699999999987765542222221111111222344444567888889988766554 344445555
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEECCCC
Q 010748 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 357 ~v~~~~~~~~~~~~~~~dg~v~i~d~~~~ 385 (502)
.++.. +.+ ++.+....++++-|..+.
T Consensus 135 gLt~d--~~~-LimsdGsatL~frdP~tf 160 (262)
T COG3823 135 GLTSD--DKN-LIMSDGSATLQFRDPKTF 160 (262)
T ss_pred eeecC--Ccc-eEeeCCceEEEecCHHHh
Confidence 55543 343 555555556776666554
No 494
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.49 E-value=34 Score=34.33 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=23.9
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010748 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 450 ~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~ 481 (502)
..|.++...+..+ +|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 3488899988887 688899999999999975
No 495
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.08 E-value=19 Score=36.21 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=52.8
Q ss_pred cccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeeeEeeccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 010748 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 344 (502)
-.-.|..+..++.|. .++-.+.+|.+.++=.+....-..+......|+|-.+.-.. . |++.+.
T Consensus 102 V~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~-~ftss~-------------- 164 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-R-FFTSST-------------- 164 (741)
T ss_pred ceEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-e-eeccCC--------------
Confidence 345688889999965 56666667766555333222223333333345444443322 2 222210
Q ss_pred ccceEeecCCeeEEEeCCCC--CCEEEEEeCCCcEEEEECCCC
Q 010748 345 SGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~~~~--~~~~~~~~~dg~v~i~d~~~~ 385 (502)
.-.+..++|+|+. ...++.-+.|..+++|++...
T Consensus 165 -------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 165 -------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred -------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 1123456777765 445666777788888887665
No 496
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.21 E-value=49 Score=29.38 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=64.9
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCeeEEEEcCCCCCEEEEEeCC---C---cEEEE---ECC--
Q 010748 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD---K---MVKLW---DLS-- 435 (502)
Q Consensus 367 ~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d---g---~i~vw---d~~-- 435 (502)
.++++...+.|.+|++.... ..++.++..- +.|..+.++..| .+|+|-=.+ . .+|+| ...
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~-------~~~~~~F~Tv-~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEE-------CPLLCTFSTV-GRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eEEEEcCCCEEEEEEcccCC-------CceeEEEcch-hheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 45555777889999998432 2555666544 789999999998 888885432 2 45664 322
Q ss_pred CCCeeE---------------------EEEecCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010748 436 NNQPSC---------------------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 436 ~~~~~~---------------------~~~~~~~~~~v~~~~~spd~~~ll~sg~~dg~i~vwd~~~~~~ 484 (502)
...+.. +..++. ..++.+++.+|-... |+.| .++++.+|.+.....
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~-LlVg-~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGN-LLVG-CGNKLVLFTLKYQTI 167 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCC-EEEE-cCCEEEEEEEEEEEE
Confidence 112211 112221 346778888886544 4444 455899998865443
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.81 E-value=12 Score=22.68 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=21.5
Q ss_pred eccCCCeeEEEEcCCCCCEEEEEeCC--CcEEEE
Q 010748 401 HAHDKAVCTISYNPLVPNLLATGSTD--KMVKLW 432 (502)
Q Consensus 401 ~~h~~~v~~l~~sp~~~~~l~t~s~d--g~i~vw 432 (502)
......-....|+|+|..++.++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455678889999996666666667 666666
No 498
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.00 E-value=11 Score=39.38 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=27.0
Q ss_pred CcEEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010748 450 GAVFSVAFSE----DSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 450 ~~v~~~~~sp----d~~~ll~sg~~dg~i~vwd~~~~~~~~~~ 488 (502)
+.+..+++++ +.. +|++.+.|+.+|+||+.++.++...
T Consensus 215 ~~~~~~~~~~~~~~~~~-~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDT-FLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTT-EEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCC-EEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455666666 555 5888999999999999999996543
No 499
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=75.69 E-value=75 Score=30.19 Aligned_cols=111 Identities=11% Similarity=-0.009 Sum_probs=60.7
Q ss_pred cEEEEEeCCCcEEEEecCCCCCccceEeecCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCC------CCCCCCcc
Q 010748 323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD------PDSTSQQS 396 (502)
Q Consensus 323 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~------~~~~~~~~ 396 (502)
.+|+.|+.+|...+. +...............|+++...+.-+.+++.++....++.+++...... ......+.
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~ 92 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKN 92 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccccc
Confidence 578999988866655 54321222234456678999888865545555555556999999654310 00000111
Q ss_pred ceEEeccCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010748 397 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 397 ~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
.....+|......+.........++++....+|.++..
T Consensus 93 ~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~ 130 (302)
T smart00036 93 VLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQW 130 (302)
T ss_pred ceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEc
Confidence 22344555555444444322234445555666777644
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.35 E-value=55 Score=32.44 Aligned_cols=162 Identities=16% Similarity=0.123 Sum_probs=89.0
Q ss_pred ccCcccceeeEEeccCCCcEEEEEecCCcEEEEeCCCCeee-Eeec-cCCC----CeE-EEEEcCCCCcEEEEEeCCCcE
Q 010748 262 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN-LTLE-HHTD----KVQ-AVAWNHHSPQILLSGSFDRSV 334 (502)
Q Consensus 262 ~~~h~~~V~~l~~~~~~~~~l~sgs~dg~v~vwd~~~~~~~-~~~~-~h~~----~v~-~l~~~~~~~~~l~s~s~dg~i 334 (502)
+..-...|..+-..|+++ .|+.-+. ..+.++++.+.... +.+- ...+ .|+ ++..-..+ ..|++++.||.|
T Consensus 216 L~~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG-FSLLVVHEDGLV 292 (733)
T ss_pred cCCCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc-eeEEEEcCCCce
Confidence 334556788888999954 5555444 67888888654321 1111 1011 122 11112233 668888889988
Q ss_pred EEE-ecCCCCCccceE----ee-cCCeeEEEeCCCCCCEEEEEeCCCcEEEEECCCCCCCCCCCCCccceEEeccCCCee
Q 010748 335 VMK-DARISTHSGFKW----AV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408 (502)
Q Consensus 335 ~iw-d~~~~~~~~~~~----~~-~~~v~~v~~~~~~~~~~~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~ 408 (502)
.-| |.+......... .. ...+..+.-. ...+-|++-..+|++..+..... +++..... -..+.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~---------~~lL~~~~-~~~~~ 361 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSE---------KLLLFERA-YQAPQ 361 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccC---------cceehhhh-hcCcc
Confidence 776 666543322111 11 1222222211 22345777788888888766543 22222222 23567
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010748 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
-+++||++ .+|++- ..|.++++.+.+..+
T Consensus 362 ~~~~Sp~~-~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 362 LVAMSPNQ-AYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeeeCccc-chheee-cCCceEEEEecCCCC
Confidence 78999987 555543 346799998877653
Done!