Query 010749
Match_columns 502
No_of_seqs 354 out of 1681
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 2E-122 5E-127 1001.0 40.4 457 13-501 1-471 (636)
2 smart00276 GLECT Galectin. Gal 100.0 2.9E-32 6.3E-37 243.4 16.4 127 182-387 1-127 (128)
3 cd00070 GLECT Galectin/galacto 100.0 4.2E-31 9.1E-36 235.2 15.3 126 182-386 2-127 (127)
4 PF00337 Gal-bind_lectin: Gala 100.0 3.1E-31 6.6E-36 236.3 14.3 132 181-387 1-133 (133)
5 KOG2287 Galactosyltransferases 99.9 7E-27 1.5E-31 241.1 12.2 176 326-502 5-183 (349)
6 KOG3587 Galectin, galactose-bi 99.9 7.9E-26 1.7E-30 206.9 15.5 134 181-389 5-140 (143)
7 PLN03193 beta-1,3-galactosyltr 99.9 1.1E-22 2.4E-27 212.6 9.5 123 365-501 103-232 (408)
8 PF01762 Galactosyl_T: Galacto 99.7 4.7E-18 1E-22 160.4 6.8 73 429-501 1-75 (195)
9 PTZ00210 UDP-GlcNAc-dependent 99.5 4E-14 8.7E-19 147.2 5.8 90 412-501 77-194 (382)
10 KOG2288 Galactosyltransferases 99.4 8.7E-13 1.9E-17 131.0 8.2 90 412-501 8-104 (274)
11 PF02434 Fringe: Fringe-like; 62.8 7.4 0.00016 39.1 3.4 29 415-443 6-35 (252)
12 KOG1594 Uncharacterized enzyme 33.5 81 0.0018 33.0 5.4 53 327-383 130-188 (305)
13 PTZ00334 trans-sialidase; Prov 26.9 4.7E+02 0.01 31.2 10.7 51 330-380 639-691 (780)
14 PF06439 DUF1080: Domain of Un 24.9 1.9E+02 0.004 26.5 5.9 38 327-364 120-157 (185)
15 PF13385 Laminin_G_3: Concanav 23.1 1.9E+02 0.004 24.6 5.2 52 328-379 79-130 (157)
16 PF09680 Tiny_TM_bacill: Prote 22.0 73 0.0016 21.7 1.8 14 18-31 5-18 (24)
17 TIGR01732 tiny_TM_bacill conse 20.7 87 0.0019 21.7 2.0 15 17-31 6-20 (26)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.2e-122 Score=1001.01 Aligned_cols=457 Identities=44% Similarity=0.819 Sum_probs=428.9
Q ss_pred ccccchhHHHHHHHHHHHHHhhcccccccccccchhhhhhcccccCccccCCCCCCCcccCCCCcchhhhcccCCCCCee
Q 010749 13 MRNWSGGLLIMALAIILVMSYSFMGTQTQTQHRTQTQKQKHKQSANDFFRNHPSNDSDMKGSQGVKEVKKTQKLFEKPHI 92 (502)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (502)
||||+||+||++|||+|++||+ ++++|.++.++ +.+|+.|+|+||+|+.++. +++++ +|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 65 (636)
T PLN03133 1 MKKWYGGVLVVSLFMLLVLRYV-LLKNPIGESYL----------QSVFPSNTTNPLEWLDPTN-PPAVQ---NPENSSQV 65 (636)
T ss_pred CceeeeeehHHHHHHHHHHHHH-HhcCCCCCCCc----------ccccccccCCchhhcccCC-Ccccc---CCCcccee
Confidence 9999999999999999999998 99999998766 5689999999999998887 77777 99999999
Q ss_pred eecC-CCcccccCCCCCCCCCcccccchhhhHhhhccCCchhhHHHHHHHHHHHHHHHhhhHHhhhccc-------CCCC
Q 010749 93 INVQ-GLGDLYSLKNMLGEDSRPLLVWGHMRLLLSRSDALPETAQGVKEAAIAWKDLLSVIEEEKASKF-------SRRK 164 (502)
Q Consensus 93 ~~~~-~~~~~~~~~n~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~a~~aw~~l~~~~~~~~~~~~-------~~~~ 164 (502)
|+.+ ++|+||+++|+|+|++++|++|+|||+|++|+|+||+|++||+||+.||++|+++++++++... ..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (636)
T PLN03133 66 ISTDTIVSSLFATRNISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEK 145 (636)
T ss_pred eccccchhhccccccCchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCC
Confidence 9999 9999999999999999999999999999999999999999999999999999999996555322 2377
Q ss_pred CCCcceeccccccCCC-CeeEEeCCCCCCCcEEEEEEEeCCCCCceEEEeccCCCCCCCCCCeEEEEeeecCCCCCCCCC
Q 010749 165 NCPPFVSNLSKSLSSG-RLIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEP 243 (502)
Q Consensus 165 ~Cp~sv~~~~~~~~~~-~~~~~iPcGL~~GssItVvG~p~~~~~~F~InL~g~~~~~~~~~~iiLHfNpRf~~d~~s~~p 243 (502)
+||++|+.|+++++++ +|++.|||||.+|++|||+|+|++++++|+|||+|+.++|++++||||||||||++|+++++|
T Consensus 146 ~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~ 225 (636)
T PLN03133 146 QCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDP 225 (636)
T ss_pred CCchhhhhcccccccCCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCC
Confidence 9999999999999865 499999999999999999999999999999999998888888999999999999999999999
Q ss_pred EEEEcCccCCCCcccceeeCCCCCCCccchhhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhhc----c
Q 010749 244 FIIQNSWTNELGWGKEERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANA----S 319 (502)
Q Consensus 244 vIV~NS~~~~~~WG~EERc~~~~s~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 319 (502)
+||||||+.+++||.||||++|+|.++++||||++||||+|+++++++++++++ |+ +| +
T Consensus 226 vIV~NT~~~~~~WG~EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~ 288 (636)
T PLN03133 226 VIVQNTWTAAHDWGEEERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHS----------------NG-SRRSPMS 288 (636)
T ss_pred EEEeCCCcCCCcccHhhhcCCCCccccccccchhhhhhhhcccccccccccccc----------------cc-ccccccc
Confidence 999999993399999999999999999999999999999999999999988763 43 33 6
Q ss_pred ccCCCCCCCCCCCCCCcEEEEEEEcCceEEEEECCEEeEeecCcccCCCCccceeeecCCcceeeeeeccCCCcCCcccc
Q 010749 320 RVGAHETSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFI 399 (502)
Q Consensus 320 ~~~~~~~~~fPF~~G~~F~ltI~~g~egfhv~VnG~H~tsF~yR~~lep~~Vt~l~V~GDV~l~sV~~~sLPtS~psd~~ 399 (502)
+++.+..++|||++|++|++||+||.|||||+|||+|+|+|+||++|+||.|++|+|+|||+|+||.+.++|+++++++.
T Consensus 289 ~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~~~~ 368 (636)
T PLN03133 289 QEATKARRYFPFKQGYLSVATLRVGTEGIQMTVDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDSEHV 368 (636)
T ss_pred ccccccccCCCCCCCCcEEEEEEecCCEEEEEECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCchhcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCcccc-ccCeeEEEEEEccCCCHHHHHHHHHHhccCCcccCCCeEEEEEeeccCChhhHHHHHHHHHHcCCEE
Q 010749 400 VDVEHLKAPLIS-RKRLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQ 478 (502)
Q Consensus 400 ~~~e~lkap~~c-~~~~~LLIlV~Sap~nferR~aIR~TWg~~~~~~~~~v~vrFvVG~s~~~~~~~~L~eEa~~ygDIl 478 (502)
.+++.|++|+++ +.+++|||+|+|+|+||+||+|||+|||+....+++.++++|+||.+.+..++..|++|+++|||||
T Consensus 369 ~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDII 448 (636)
T PLN03133 369 IDLEALKSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQ 448 (636)
T ss_pred cchHHhcCCCCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeE
Confidence 899999999887 6789999999999999999999999999987666677999999999999999999999999999999
Q ss_pred EecccccCCCcHHHHHHhhhccc
Q 010749 479 IMPFVDYYSLISLKTIAICIFGV 501 (502)
Q Consensus 479 q~dF~DsY~NLTlKtla~lew~~ 501 (502)
|+||+|+|+|||+||+++|.|++
T Consensus 449 q~dF~DsY~NLTlKtl~~~~wa~ 471 (636)
T PLN03133 449 LMPFVDYYSLITWKTLAICIFGT 471 (636)
T ss_pred EEeeechhhhhHHHHHHHHHHHH
Confidence 99999999999999999999985
No 2
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=100.00 E-value=2.9e-32 Score=243.44 Aligned_cols=127 Identities=36% Similarity=0.527 Sum_probs=119.1
Q ss_pred eeEEeCCCCCCCcEEEEEEEeCCCCCceEEEeccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCccccee
Q 010749 182 LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEER 261 (502)
Q Consensus 182 ~~~~iPcGL~~GssItVvG~p~~~~~~F~InL~g~~~~~~~~~~iiLHfNpRf~~d~~s~~pvIV~NS~~~~~~WG~EER 261 (502)
|+..||+||.+|+.|+|.|+|..++++|.|||+.+ .++|+|||||||+++ +||+||+.+ |.||.|||
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~------~~di~lH~n~rf~~~------~iV~Ns~~~-g~Wg~Eer 67 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG------GDDIALHFNPRFNEN------KIVCNSKLN-GSWGSEER 67 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC------CCCEEEEEeccCCCC------EEEEeCccC-CccchheE
Confidence 46789999999999999999999999999999974 268999999999976 999999998 89999999
Q ss_pred eCCCCCCCccchhhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhhccccCCCCCCCCCCCCCCcEEEEE
Q 010749 262 CPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTTI 341 (502)
Q Consensus 262 c~~~~s~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~ltI 341 (502)
+ ..|||.+|++|+|+|
T Consensus 68 ~----------------------------------------------------------------~~~Pf~~g~~F~l~i 83 (128)
T smart00276 68 E----------------------------------------------------------------GGFPFQPGQPFDLTI 83 (128)
T ss_pred c----------------------------------------------------------------CCCCCCCCCEEEEEE
Confidence 8 479999999999999
Q ss_pred EEcCceEEEEECCEEeEeecCcccCCCCccceeeecCCcceeeeee
Q 010749 342 WVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFA 387 (502)
Q Consensus 342 ~~g~egfhv~VnG~H~tsF~yR~~lep~~Vt~l~V~GDV~l~sV~~ 387 (502)
.++.++|+|+|||+|+++|+||.+++ .|+.|.|.||+.|++|.+
T Consensus 84 ~~~~~~f~i~vng~~~~~f~~R~~~~--~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 84 IVQPDHFQIFVNGVHITTFPHRLPLE--SIDYLSINGDVQLTSVSF 127 (128)
T ss_pred EEcCCEEEEEECCEeEEEecCCCCcc--cEeEEEEeCCEEEEEEEE
Confidence 99999999999999999999998766 999999999999999976
No 3
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.97 E-value=4.2e-31 Score=235.18 Aligned_cols=126 Identities=36% Similarity=0.519 Sum_probs=117.8
Q ss_pred eeEEeCCCCCCCcEEEEEEEeCCCCCceEEEeccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCccccee
Q 010749 182 LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEER 261 (502)
Q Consensus 182 ~~~~iPcGL~~GssItVvG~p~~~~~~F~InL~g~~~~~~~~~~iiLHfNpRf~~d~~s~~pvIV~NS~~~~~~WG~EER 261 (502)
|...|||||.+|++|+|.|++..++++|.|||+.+ ..+|+|||||||..+ +||+||+.+ |.||.|||
T Consensus 2 ~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~------~~~i~lH~n~rf~~~------~IV~Ns~~~-g~Wg~Eer 68 (127)
T cd00070 2 YKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTG------SSDIALHFNPRFDEN------VIVRNSFLN-GNWGPEER 68 (127)
T ss_pred cccccCCCCcCCCEEEEEEEECCCCCEEEEEEecC------CCCEEEEEeeeCCCC------EEEEcCCCC-CEecHhhc
Confidence 66789999999999999999999999999999974 238999999999986 999999999 89999999
Q ss_pred eCCCCCCCccchhhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhhccccCCCCCCCCCCCCCCcEEEEE
Q 010749 262 CPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTTI 341 (502)
Q Consensus 262 c~~~~s~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~ltI 341 (502)
+ ..|||.+|++|+|+|
T Consensus 69 ~----------------------------------------------------------------~~~pf~~g~~F~l~i 84 (127)
T cd00070 69 S----------------------------------------------------------------GGFPFQPGQPFELTI 84 (127)
T ss_pred c----------------------------------------------------------------CCCCCCCCCeEEEEE
Confidence 8 379999999999999
Q ss_pred EEcCceEEEEECCEEeEeecCcccCCCCccceeeecCCcceeeee
Q 010749 342 WVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAF 386 (502)
Q Consensus 342 ~~g~egfhv~VnG~H~tsF~yR~~lep~~Vt~l~V~GDV~l~sV~ 386 (502)
.++.++|+|+|||+|+++|+||.++ ++|+.|.|.||+.+++|.
T Consensus 85 ~~~~~~f~i~vng~~~~~F~~R~~~--~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 85 LVEEDKFQIFVNGQHFFSFPHRLPL--ESIDYLSINGDVSLTSVE 127 (127)
T ss_pred EEcCCEEEEEECCEeEEEecCcCCh--hhEEEEEEeCCEEEEEeC
Confidence 9999999999999999999999876 499999999999999874
No 4
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.97 E-value=3.1e-31 Score=236.31 Aligned_cols=132 Identities=34% Similarity=0.546 Sum_probs=120.6
Q ss_pred CeeEEeCCCCCCCcEEEEEEEeCCCCCceEEEeccCCCCCCCCCCeEEEEeeecCC-CCCCCCCEEEEcCccCCCCcccc
Q 010749 181 RLIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPG-DNMTEEPFIIQNSWTNELGWGKE 259 (502)
Q Consensus 181 ~~~~~iPcGL~~GssItVvG~p~~~~~~F~InL~g~~~~~~~~~~iiLHfNpRf~~-d~~s~~pvIV~NS~~~~~~WG~E 259 (502)
+|++.||+||.+|+.|+|.|++..++++|.|||++.. .++.++++|||||||.. + +||+||+.+ |.||.|
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~--~~~~~~i~lH~~~rf~~~~------~iv~Ns~~~-g~Wg~E 71 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGP--NDPDDDIALHFNPRFDEQN------VIVRNSRIN-GKWGQE 71 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES---STTTTEEEEEEEEECTTEE------EEEEEEEET-TEE-SE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCC--cCCCCCEEEEEEEEeCCCc------eEEEeceEC-CEeccc
Confidence 4889999999999999999999999999999999753 24578999999999998 5 999999999 899999
Q ss_pred eeeCCCCCCCccchhhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhhccccCCCCCCCCCCCCCCcEEE
Q 010749 260 ERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTT 339 (502)
Q Consensus 260 ERc~~~~s~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l 339 (502)
||+ ..|||.+|++|+|
T Consensus 72 e~~----------------------------------------------------------------~~~pf~~g~~F~i 87 (133)
T PF00337_consen 72 ERE----------------------------------------------------------------SPFPFQPGQPFEI 87 (133)
T ss_dssp EEE----------------------------------------------------------------SSTSSTTTSEEEE
T ss_pred eee----------------------------------------------------------------eeeeecCCceEEE
Confidence 996 4799999999999
Q ss_pred EEEEcCceEEEEECCEEeEeecCcccCCCCccceeeecCCcceeeeee
Q 010749 340 TIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFA 387 (502)
Q Consensus 340 tI~~g~egfhv~VnG~H~tsF~yR~~lep~~Vt~l~V~GDV~l~sV~~ 387 (502)
+|.++.++|+|+|||+|+++|+||.+++ +|++|.|.||++|++|++
T Consensus 88 ~I~~~~~~f~I~vng~~~~~F~~R~~~~--~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 88 RIRVEEDGFKIYVNGKHFCSFPHRLPLS--SIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EEEEESSEEEEEETTEEEEEEE-SSCGG--GEEEEEEEESEEEEEEEE
T ss_pred EEEEecCeeEEEECCeEEEEeeCcCCHH--HcCEEEEECCEEEEEEEC
Confidence 9999999999999999999999997775 999999999999999975
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.94 E-value=7e-27 Score=241.15 Aligned_cols=176 Identities=32% Similarity=0.440 Sum_probs=151.3
Q ss_pred CCCCCCCCCCcEEEEEEEcCceEEEEECCEEeEeecCcccCCCCccceeeecCCcceeeeeeccCCCcCCcccccccccc
Q 010749 326 TSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVEHL 405 (502)
Q Consensus 326 ~~~fPF~~G~~F~ltI~~g~egfhv~VnG~H~tsF~yR~~lep~~Vt~l~V~GDV~l~sV~~~sLPtS~psd~~~~~e~l 405 (502)
.+.+|+..+..|+.++.++.+++++.+++++.++|.++.....+..++...++.+..+.......+.+... .......+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 83 (349)
T KOG2287|consen 5 EFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFAD-FQKFFYLL 83 (349)
T ss_pred cccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchh-hccChhhh
Confidence 36799999999999999999999999999999999999987777889989999886666665566665542 11122335
Q ss_pred cCccccc--cCeeEEEEEEccCCCHHHHHHHHHHhccCCcccCCCeEEEEEeeccCCh-hhHHHHHHHHHHcCCEEEecc
Q 010749 406 KAPLISR--KRLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNR-QVNFELWKEAQAYGDIQIMPF 482 (502)
Q Consensus 406 kap~~c~--~~~~LLIlV~Sap~nferR~aIR~TWg~~~~~~~~~v~vrFvVG~s~~~-~~~~~L~eEa~~ygDIlq~dF 482 (502)
..|+.|. ..++|||+|+|+++||+||+|||+|||+...+++++++++|+||.+.+. .++..|.+|++.||||||+||
T Consensus 84 ~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df 163 (349)
T KOG2287|consen 84 YLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDF 163 (349)
T ss_pred cCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEec
Confidence 5666662 2489999999999999999999999999998888999999999999875 578999999999999999999
Q ss_pred cccCCCcHHHHHHhhhcccC
Q 010749 483 VDYYSLISLKTIAICIFGVC 502 (502)
Q Consensus 483 ~DsY~NLTlKtla~lew~~~ 502 (502)
.|+|+|||+||+++|+|+++
T Consensus 164 ~Dty~nltlKtl~~l~w~~~ 183 (349)
T KOG2287|consen 164 EDTYFNLTLKTLAILLWGVS 183 (349)
T ss_pred ccchhchHHHHHHHHHHHHh
Confidence 99999999999999999973
No 6
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.94 E-value=7.9e-26 Score=206.88 Aligned_cols=134 Identities=31% Similarity=0.430 Sum_probs=120.6
Q ss_pred CeeEEeCCCCCCCcEEEEEEEeCCC-CCceEEEecc-CCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCccc
Q 010749 181 RLIIEVPCGLVEDSSITLVGIPDGR-YGSFQIELIG-SQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGK 258 (502)
Q Consensus 181 ~~~~~iPcGL~~GssItVvG~p~~~-~~~F~InL~g-~~~~~~~~~~iiLHfNpRf~~d~~s~~pvIV~NS~~~~~~WG~ 258 (502)
++...+++||.+|+.+++.|.+... .++|.+++.. ..+ +. +.+|+|||||||+++ .|||||+.+ |.||.
T Consensus 5 p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~-~~dia~Hfnprf~~~------~VVrNs~~~-g~Wg~ 75 (143)
T KOG3587|consen 5 PFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNL-DS-DSDIALHFNPRFDEK------GVVRNSLIN-GEWGL 75 (143)
T ss_pred ccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeeccc-CC-CCcEEEEEeccCCCC------eEEEecccC-CccCc
Confidence 4667789999999999999999865 6799999994 333 22 567999999999998 699999988 99999
Q ss_pred ceeeCCCCCCCccchhhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhhccccCCCCCCCCCCCCCCcEE
Q 010749 259 EERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFT 338 (502)
Q Consensus 259 EERc~~~~s~~~~~vdg~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~ 338 (502)
|||+ ..+||++|++|.
T Consensus 76 eE~~----------------------------------------------------------------~~~PF~~g~~F~ 91 (143)
T KOG3587|consen 76 EERE----------------------------------------------------------------GGNPFQPGQPFD 91 (143)
T ss_pred hhhc----------------------------------------------------------------CCCCCCCCCeEE
Confidence 9998 589999999999
Q ss_pred EEEEEcCceEEEEECCEEeEeecCcccCCCCccceeeecCCcceeeeeecc
Q 010749 339 TTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEG 389 (502)
Q Consensus 339 ltI~~g~egfhv~VnG~H~tsF~yR~~lep~~Vt~l~V~GDV~l~sV~~~s 389 (502)
|+|.++.+.|+|.|||.|+++|+||.+.+ .|..|.|.||++|.+|.+..
T Consensus 92 l~I~~~~~~~~I~VNg~~f~~y~HR~p~~--~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 92 LTILVEEDKFQIFVNGVHFADYPHRIPPS--SVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred EEEEEccCeEEEEECCEEEEeecCCCCCh--heeEEEEeeeEEEEEEEEEc
Confidence 99999999999999999999999998766 99999999999999999764
No 7
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.87 E-value=1.1e-22 Score=212.65 Aligned_cols=123 Identities=23% Similarity=0.313 Sum_probs=102.2
Q ss_pred cCCCCccceeeecCCcceeeeeeccCCCcCCcccccccccccCccccccCeeEEEEEEccCCCHHHHHHHHHHhccCCcc
Q 010749 365 KLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVEHLKAPLISRKRLVMLIGVFSTGNNFERRMALRRSWMQYPAV 444 (502)
Q Consensus 365 ~lep~~Vt~l~V~GDV~l~sV~~~sLPtS~psd~~~~~e~lkap~~c~~~~~LLIlV~Sap~nferR~aIR~TWg~~~~~ 444 (502)
.||+|.+++.. +.++.+.++|++++++. + +...+.+++|+|+|+|+|+|++||++||+|||+....
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~------~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~ 168 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKK------T--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEK 168 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCccccccc------c--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCccc
Confidence 47777777776 45555678888877543 1 2223667999999999999999999999999986432
Q ss_pred -----cCCCeEEEEEeeccC--ChhhHHHHHHHHHHcCCEEEecccccCCCcHHHHHHhhhccc
Q 010749 445 -----RSGDLAVRFFIGLHK--NRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGV 501 (502)
Q Consensus 445 -----~~~~v~vrFvVG~s~--~~~~~~~L~eEa~~ygDIlq~dF~DsY~NLTlKtla~lew~~ 501 (502)
....++++||+|.+. +..+++.|++|+++||||||+||+|+|+|||+||+++|+||+
T Consensus 169 ~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~ 232 (408)
T PLN03193 169 RKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAV 232 (408)
T ss_pred ccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHH
Confidence 135699999999997 568999999999999999999999999999999999999985
No 8
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.72 E-value=4.7e-18 Score=160.44 Aligned_cols=73 Identities=33% Similarity=0.488 Sum_probs=68.5
Q ss_pred HHHHHHHHHhccCCcccCCCeEEEEEeeccC--ChhhHHHHHHHHHHcCCEEEecccccCCCcHHHHHHhhhccc
Q 010749 429 ERRMALRRSWMQYPAVRSGDLAVRFFIGLHK--NRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGV 501 (502)
Q Consensus 429 erR~aIR~TWg~~~~~~~~~v~vrFvVG~s~--~~~~~~~L~eEa~~ygDIlq~dF~DsY~NLTlKtla~lew~~ 501 (502)
+||++||+|||+.....+.+++++||||.+. +..+++.|.+|+++||||||+||.|+|+|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 5899999999998876678899999999998 778899999999999999999999999999999999999985
No 9
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.47 E-value=4e-14 Score=147.23 Aligned_cols=90 Identities=26% Similarity=0.372 Sum_probs=83.4
Q ss_pred ccCeeEEEEEEccCCC--HHHHHHHHHHhccCCccc------CCCeEEEEEeeccCCh--hhHHHHHHHHHHcCCEEEec
Q 010749 412 RKRLVMLIGVFSTGNN--FERRMALRRSWMQYPAVR------SGDLAVRFFIGLHKNR--QVNFELWKEAQAYGDIQIMP 481 (502)
Q Consensus 412 ~~~~~LLIlV~Sap~n--ferR~aIR~TWg~~~~~~------~~~v~vrFvVG~s~~~--~~~~~L~eEa~~ygDIlq~d 481 (502)
..+..+++||.|..++ |.||++.|+||.++..+. .+++.++|++|.|++. +++.+|++||++|||||++|
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 5678999999999999 999999999999988765 6789999999999987 99999999999999999999
Q ss_pred c------------------cccCCCcHHHHHHhhhccc
Q 010749 482 F------------------VDYYSLISLKTIAICIFGV 501 (502)
Q Consensus 482 F------------------~DsY~NLTlKtla~lew~~ 501 (502)
| .|+|.|+|+||+++|+||.
T Consensus 157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~ 194 (382)
T PTZ00210 157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFAL 194 (382)
T ss_pred cccCccccccccccCCcccchhhcchhHHHHHHHHHHH
Confidence 9 7778899999999999985
No 10
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.38 E-value=8.7e-13 Score=131.03 Aligned_cols=90 Identities=24% Similarity=0.400 Sum_probs=80.6
Q ss_pred ccCeeEEEEEEccCCCHHHHHHHHHHhccCC-----cccCCCeEEEEEeecc-CChhhHHHHHHHHHHcCCEEEec-ccc
Q 010749 412 RKRLVMLIGVFSTGNNFERRMALRRSWMQYP-----AVRSGDLAVRFFIGLH-KNRQVNFELWKEAQAYGDIQIMP-FVD 484 (502)
Q Consensus 412 ~~~~~LLIlV~Sap~nferR~aIR~TWg~~~-----~~~~~~v~vrFvVG~s-~~~~~~~~L~eEa~~ygDIlq~d-F~D 484 (502)
.+.++++|+|.|++++.+||+.||+|||... ......|.+||++|.. .......+|++|.++|+|.+++| .+|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 5689999999999999999999999999872 1224679999999994 46788999999999999999999 999
Q ss_pred cCCCcHHHHHHhhhccc
Q 010749 485 YYSLISLKTIAICIFGV 501 (502)
Q Consensus 485 sY~NLTlKtla~lew~~ 501 (502)
.|.+|+.||++++.+|+
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~ 104 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAV 104 (274)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998875
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=62.83 E-value=7.4 Score=39.15 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=21.1
Q ss_pred eeEEEEEEccCCCH-HHHHHHHHHhccCCc
Q 010749 415 LVMLIGVFSTGNNF-ERRMALRRSWMQYPA 443 (502)
Q Consensus 415 ~~LLIlV~Sap~nf-erR~aIR~TWg~~~~ 443 (502)
-+++|+|+|++.+. .|=.+|++||++...
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~ 35 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN 35 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC
Confidence 36889999998554 555799999998764
No 12
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=33.47 E-value=81 Score=33.01 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=36.1
Q ss_pred CCCCCCCCCcEEEEEEEcCceEEEE-----ECCEEe-EeecCcccCCCCccceeeecCCccee
Q 010749 327 SNFPFVDGNPFTTTIWVGLDGFHMT-----VNGRHE-TSLAYREKLEPWSVTGVKVAGGVDLF 383 (502)
Q Consensus 327 ~~fPF~~G~~F~ltI~~g~egfhv~-----VnG~H~-tsF~yR~~lep~~Vt~l~V~GDV~l~ 383 (502)
|+|-| .|.++|..+.+..+.+ .|++.+ .+|+|++=|.-.+|++++|.|--.+.
T Consensus 130 Wp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL~tld 188 (305)
T KOG1594|consen 130 WPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGLETLD 188 (305)
T ss_pred CCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEecccccc
Confidence 55554 4677777775555543 267776 47889987766699999999854443
No 13
>PTZ00334 trans-sialidase; Provisional
Probab=26.86 E-value=4.7e+02 Score=31.24 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=38.2
Q ss_pred CCCCCCcEEEEEEEcC-ceEEEEECCEEeEeecCccc-CCCCccceeeecCCc
Q 010749 330 PFVDGNPFTTTIWVGL-DGFHMTVNGRHETSLAYREK-LEPWSVTGVKVAGGV 380 (502)
Q Consensus 330 PF~~G~~F~ltI~~g~-egfhv~VnG~H~tsF~yR~~-lep~~Vt~l~V~GDV 380 (502)
+..+|+...+.|.... ..-.++|||+.+.+-.+... -.+..|+++.|.||-
T Consensus 639 tWe~~k~yqVal~L~~G~~gsvYVDG~~vg~~~~~l~~~~~~~IshFyiGgdg 691 (780)
T PTZ00334 639 NWEPETTHQVAIVLRNGKQGSAYVDGQRVGDASCELKNTDSKGISHFYIGGDG 691 (780)
T ss_pred cccCCCeEEEEEEEeCCCeEEEEECCEEecCcccccCCCCCcccceEEECCCc
Confidence 5677888999888854 46889999999977444321 235579999998875
No 14
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=24.88 E-value=1.9e+02 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=30.7
Q ss_pred CCCCCCCCCcEEEEEEEcCceEEEEECCEEeEeecCcc
Q 010749 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYRE 364 (502)
Q Consensus 327 ~~fPF~~G~~F~ltI~~g~egfhv~VnG~H~tsF~yR~ 364 (502)
....+..|+=.+++|.|..+.+.+.|||+.+.+|.-..
T Consensus 120 ~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 120 VNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp S--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS
T ss_pred ccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC
Confidence 45678899999999999999999999999998877664
No 15
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=23.13 E-value=1.9e+02 Score=24.62 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=34.2
Q ss_pred CCCCCCCCcEEEEEEEcCceEEEEECCEEeEeecCcccCCCCccceeeecCC
Q 010749 328 NFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGG 379 (502)
Q Consensus 328 ~fPF~~G~~F~ltI~~g~egfhv~VnG~H~tsF~yR~~lep~~Vt~l~V~GD 379 (502)
..++..++-..+++........++|||+.+.+...-.......-..+.|.++
T Consensus 79 ~~~~~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~~iG~~ 130 (157)
T PF13385_consen 79 DSNLPDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPLFIGGS 130 (157)
T ss_dssp BS---TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEEEESS-
T ss_pred CcccCCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceEEEeec
Confidence 4677789999999999999999999999998766554322223445555543
No 16
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.00 E-value=73 Score=21.66 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHH
Q 010749 18 GGLLIMALAIILVM 31 (502)
Q Consensus 18 ~~~~~~~l~~~~~~ 31 (502)
|-.||+.||++|++
T Consensus 5 ~FalivVLFILLiI 18 (24)
T PF09680_consen 5 GFALIVVLFILLII 18 (24)
T ss_pred cchhHHHHHHHHHH
Confidence 55788999999987
No 17
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.71 E-value=87 Score=21.68 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHH
Q 010749 17 SGGLLIMALAIILVM 31 (502)
Q Consensus 17 ~~~~~~~~l~~~~~~ 31 (502)
.|..+|+.||++|++
T Consensus 6 ~gf~livVLFILLII 20 (26)
T TIGR01732 6 GGFALIVVLFILLVI 20 (26)
T ss_pred cchHHHHHHHHHHHH
Confidence 356788899999987
Done!