BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010750
(502 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KM91|CDCA7_RAT Cell division cycle-associated protein 7 OS=Rattus norvegicus
GN=Cdca7 PE=2 SV=1
Length = 377
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 19 KFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFS 78
+FC CL NRYGE+ +DA L W+CP CRGICNCS C ++ G TG LV AK GF
Sbjct: 301 QFCGPCLRNRYGEEVKDALLDPNWHCPPCRGICNCSFCRQRDGRCATGVLVYLAKYHGFG 360
Query: 79 SVSEML 84
+V L
Sbjct: 361 NVHAYL 366
>sp|Q32PH1|CDCA7_BOVIN Cell division cycle-associated protein 7 OS=Bos taurus GN=CDCA7
PE=2 SV=1
Length = 374
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 19 KFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFS 78
+FC CL NRYGE+ +DA L W+CP CRGICNCS C ++ G TG LV AK GF
Sbjct: 298 QFCGPCLRNRYGEEVKDALLDPNWHCPPCRGICNCSFCRQRDGRCATGVLVYLAKYHGFG 357
Query: 79 SVSEML 84
+V L
Sbjct: 358 NVHAYL 363
>sp|Q9D0M2|CDCA7_MOUSE Cell division cycle-associated protein 7 OS=Mus musculus GN=Cdca7
PE=1 SV=1
Length = 382
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 19 KFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFS 78
+FC CL NRYGE+ +DA L W+CP CRGICNCS C ++ G TG LV AK GF
Sbjct: 306 QFCGPCLRNRYGEEVKDALLDPNWHCPPCRGICNCSFCRQRDGRCATGVLVYLAKYHGFG 365
Query: 79 SVSEML 84
+V L
Sbjct: 366 NVHAYL 371
>sp|Q9BWT1|CDCA7_HUMAN Cell division cycle-associated protein 7 OS=Homo sapiens GN=CDCA7
PE=1 SV=1
Length = 371
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 41/66 (62%)
Query: 19 KFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFS 78
+FC CL NRYGE+ DA L W+CP CRGICNCS C ++ G TG LV AK GF
Sbjct: 295 QFCGPCLRNRYGEEVRDALLDPNWHCPPCRGICNCSFCRQRDGRCATGVLVYLAKYHGFG 354
Query: 79 SVSEML 84
+V L
Sbjct: 355 NVHAYL 360
>sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein OS=Homo sapiens
GN=CDCA7L PE=1 SV=2
Length = 454
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 39/66 (59%)
Query: 19 KFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFS 78
+FC CL NRYGE A L W CP CRGICNCS C K+ G TG L+ AK G+
Sbjct: 378 QFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDGRCATGILIHLAKFYGYD 437
Query: 79 SVSEML 84
+V E L
Sbjct: 438 NVKEYL 443
>sp|Q922M5|CDA7L_MOUSE Cell division cycle-associated 7-like protein OS=Mus musculus
GN=Cdca7l PE=2 SV=1
Length = 438
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 39/66 (59%)
Query: 19 KFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFS 78
+FC CL NRYGE A L W CP CRGICNCS C ++ G TG L+ AK G+
Sbjct: 366 QFCGPCLRNRYGEDVRTALLDPKWTCPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYD 425
Query: 79 SVSEML 84
+V E L
Sbjct: 426 NVKEYL 431
>sp|Q4G059|CDA7L_RAT Cell division cycle-associated 7-like protein OS=Rattus norvegicus
GN=Cdca7l PE=2 SV=1
Length = 438
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 39/66 (59%)
Query: 19 KFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKATGFS 78
+FC CL NRYGE A L W CP CRGICNCS C ++ G TG L+ AK G+
Sbjct: 366 QFCGPCLRNRYGEDVRTALLDPKWTCPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYD 425
Query: 79 SVSEML 84
+V E L
Sbjct: 426 NVKEYL 431
>sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A OS=Homo
sapiens GN=BAZ1A PE=1 SV=2
Length = 1556
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 251 ITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELM 307
+ E+P P T +PPE G AL LEF AFG++ DL+ + + E++
Sbjct: 407 LKELPEP------TPVKTRLPPEIFGDALMVLEFLNAFGELFDLQDEFPDGVTLEVL 457
>sp|O88379|BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain protein 1A OS=Mus
musculus GN=Baz1a PE=1 SV=3
Length = 1555
Score = 35.8 bits (81), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 251 ITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLK 295
+ E+P P T +PPE G AL LEF AFG++ DL+
Sbjct: 407 LKELPEP------TPVKTRLPPEVFGDALMVLEFLNAFGELFDLQ 445
>sp|Q7ZYG4|OSTF1_XENLA Osteoclast-stimulating factor 1 OS=Xenopus laevis GN=ostf1 PE=2
SV=1
Length = 214
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 18 IKFCHKCLLNRYG----EKAEDAALLDGWNCPRC-RGICNCSLCMKKRGHQPTGQLVQ-- 70
+ + +CL NR G +KA AL W C + + + L QP +L Q
Sbjct: 86 LSWLRECLENRVGVNGLDKAGSTALY--WGCHGGHKDVVDMLLA------QPNIELNQQN 137
Query: 71 --------AAKATGFSSVSEMLLIKG--YDNLDQEKKIAKDVAALPKKSLTLKKESEAAL 120
AA G++ + E+LL+KG D + EKK+A D+A + + LKK+ +
Sbjct: 138 KLGDTALHAAAWKGYADIVELLLVKGARTDLRNNEKKLALDMATNAQCASLLKKKQAQGI 197
Query: 121 SRKPGKENSFDRDCDSN 137
R + + D DS+
Sbjct: 198 VRTSSNADEYLDDEDSD 214
>sp|O25812|PNP_HELPY Polyribonucleotide nucleotidyltransferase OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=pnp PE=3 SV=1
Length = 688
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 437 LKQKLQDEVAKAIITNGAPLSISEHEAIVSEIKRKAAEAHSEM--------------TEA 482
LK + DE+ K I ++ ++SE E + +EI RK +EAHSE TE
Sbjct: 249 LKNQYFDEIIKGIESS----ALSERENVFNEIARKISEAHSEFSLEEIELSLEKVKKTEI 304
Query: 483 KGMAFKSKLR 492
+ M K K+R
Sbjct: 305 RRMIIKDKIR 314
>sp|B2UUX6|PNP_HELPS Polyribonucleotide nucleotidyltransferase OS=Helicobacter pylori
(strain Shi470) GN=pnp PE=3 SV=1
Length = 688
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 437 LKQKLQDEVAKAIITNGAPLSISEHEAIVSEIKRKAAEAHSEM--------------TEA 482
LK + DE+ K I ++ ++SE E + +EI RK +EAHSE TE
Sbjct: 249 LKNQYFDEIIKGIESS----ALSERENVFNEIARKISEAHSEFSLKEIELSLEKVKKTEI 304
Query: 483 KGMAFKSKLR 492
+ M K K+R
Sbjct: 305 RCMIIKDKIR 314
>sp|Q211E5|EFG_RHOPB Elongation factor G OS=Rhodopseudomonas palustris (strain BisB18)
GN=fusA PE=3 SV=1
Length = 690
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 397 DEALGTTVLRNWID-DQNSEFVEKVKESREKFVAAKEKEKKLKQKLQDEVAKAIITNGAP 455
DEALG N+ D D ++ VEK KE REK V A +L DEV A + P
Sbjct: 188 DEALGA----NFKDIDIPADLVEKAKEYREKLVEA-------AVELDDEVLTAFLDGVEP 236
Query: 456 LSISEHEAIVSEIKRKAAEAHSEMTEAKGMAFKSK 490
EA + + RKA + G AFK+K
Sbjct: 237 -----DEATLKRLIRKAVLTSAFYPVLCGSAFKNK 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,615,460
Number of Sequences: 539616
Number of extensions: 7759812
Number of successful extensions: 29147
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 28458
Number of HSP's gapped (non-prelim): 881
length of query: 502
length of database: 191,569,459
effective HSP length: 122
effective length of query: 380
effective length of database: 125,736,307
effective search space: 47779796660
effective search space used: 47779796660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)