Query 010750
Match_columns 502
No_of_seqs 145 out of 200
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10497 zf-4CXXC_R1: Zinc-fin 100.0 2.1E-33 4.6E-38 244.8 5.1 83 3-85 6-105 (105)
2 smart00571 DDT domain in diffe 99.5 1.9E-14 4.1E-19 115.2 5.6 63 272-337 1-63 (63)
3 KOG1473 Nucleosome remodeling 99.4 4.6E-13 1E-17 151.4 8.9 144 263-412 180-338 (1414)
4 PF02791 DDT: DDT domain; Int 99.2 2.6E-11 5.7E-16 96.3 5.2 60 272-336 1-60 (61)
5 PF15612 WHIM1: WSTF, HB1, Itc 98.2 5.9E-07 1.3E-11 68.3 1.8 39 377-415 11-49 (50)
6 KOG1356 Putative transcription 96.6 0.00045 9.7E-09 78.5 -0.2 77 4-83 229-313 (889)
7 COG5432 RAD18 RING-finger-cont 95.2 0.0079 1.7E-07 62.1 1.4 40 1-49 22-67 (391)
8 KOG1245 Chromatin remodeling c 94.6 0.16 3.5E-06 61.9 10.1 174 238-425 498-707 (1404)
9 KOG2164 Predicted E3 ubiquitin 88.9 0.19 4.2E-06 55.2 1.4 45 5-62 187-237 (513)
10 cd00162 RING RING-finger (Real 88.0 0.4 8.7E-06 33.4 2.2 28 14-49 16-43 (45)
11 PF13920 zf-C3HC4_3: Zinc fing 86.6 0.5 1.1E-05 35.7 2.1 35 6-49 4-45 (50)
12 PF00097 zf-C3HC4: Zinc finger 86.3 0.45 9.8E-06 34.1 1.6 27 14-47 15-41 (41)
13 KOG0287 Postreplication repair 85.8 0.25 5.5E-06 52.3 0.1 39 2-49 21-65 (442)
14 PF15227 zf-C3HC4_4: zinc fing 85.5 0.51 1.1E-05 35.2 1.6 29 14-47 14-42 (42)
15 TIGR00570 cdk7 CDK-activating 85.0 0.71 1.5E-05 48.3 3.0 37 5-49 4-51 (309)
16 TIGR00599 rad18 DNA repair pro 84.8 0.74 1.6E-05 49.6 3.1 42 4-54 26-73 (397)
17 PLN03208 E3 ubiquitin-protein 84.7 0.64 1.4E-05 45.7 2.4 48 5-52 19-79 (193)
18 PF14634 zf-RING_5: zinc-RING 84.4 0.63 1.4E-05 34.6 1.7 26 14-48 18-43 (44)
19 PF13639 zf-RING_2: Ring finge 81.0 0.57 1.2E-05 34.4 0.3 26 14-48 19-44 (44)
20 PF13923 zf-C3HC4_2: Zinc fing 80.5 1.1 2.3E-05 32.3 1.6 25 14-47 15-39 (39)
21 smart00184 RING Ring finger. E 79.9 1.1 2.4E-05 29.9 1.5 26 14-47 14-39 (39)
22 PHA02926 zinc finger-like prot 78.1 1.2 2.6E-05 45.0 1.7 34 14-50 195-228 (242)
23 KOG0995 Centromere-associated 77.0 46 0.001 37.9 13.5 187 270-479 97-310 (581)
24 KOG0311 Predicted E3 ubiquitin 72.1 0.96 2.1E-05 48.2 -0.8 48 5-60 44-98 (381)
25 KOG2177 Predicted E3 ubiquitin 71.7 2.3 5E-05 39.5 1.7 35 5-48 14-54 (386)
26 KOG0823 Predicted E3 ubiquitin 67.1 3.5 7.6E-05 41.7 2.0 37 7-49 50-92 (230)
27 PF05502 Dynactin_p62: Dynacti 67.0 3.4 7.5E-05 45.4 2.1 68 5-73 9-115 (483)
28 PF14835 zf-RING_6: zf-RING of 61.6 4.8 0.0001 33.6 1.5 32 6-48 9-47 (65)
29 KOG1002 Nucleotide excision re 60.1 3.9 8.4E-05 46.0 0.9 40 6-49 538-583 (791)
30 KOG0824 Predicted E3 ubiquitin 59.6 4.5 9.7E-05 42.5 1.2 37 5-49 8-50 (324)
31 KOG3799 Rab3 effector RIM1 and 59.4 2.3 4.9E-05 40.3 -0.8 40 4-48 65-114 (169)
32 PF12678 zf-rbx1: RING-H2 zinc 58.1 7.1 0.00015 32.2 2.0 26 14-48 48-73 (73)
33 smart00504 Ubox Modified RING 58.1 9 0.00019 29.4 2.4 37 6-51 3-45 (63)
34 KOG1785 Tyrosine kinase negati 54.5 5.7 0.00012 43.4 1.0 37 5-48 370-412 (563)
35 KOG2660 Locus-specific chromos 49.5 5.4 0.00012 42.2 -0.1 37 4-49 15-58 (331)
36 PF12861 zf-Apc11: Anaphase-pr 47.6 16 0.00034 31.9 2.5 43 1-49 29-79 (85)
37 COG5152 Uncharacterized conser 42.7 9.6 0.00021 38.3 0.5 25 6-30 198-228 (259)
38 KOG3899 Uncharacterized conser 41.7 7.1 0.00015 41.1 -0.6 44 2-49 315-362 (381)
39 KOG0802 E3 ubiquitin ligase [P 41.3 11 0.00024 41.8 0.8 38 3-49 290-338 (543)
40 PF10239 DUF2465: Protein of u 40.0 91 0.002 32.9 7.1 98 300-409 17-117 (318)
41 cd00065 FYVE FYVE domain; Zinc 39.2 11 0.00023 28.8 0.2 43 5-48 3-55 (57)
42 PF06844 DUF1244: Protein of u 38.9 13 0.00029 31.2 0.7 17 18-34 10-26 (68)
43 PRK14873 primosome assembly pr 38.6 14 0.00031 42.3 1.1 34 5-49 384-430 (665)
44 KOG1729 FYVE finger containing 36.6 7.1 0.00015 40.6 -1.5 29 4-32 168-207 (288)
45 PF08524 rRNA_processing: rRNA 36.6 2.2E+02 0.0048 26.9 8.5 63 408-470 76-144 (148)
46 COG3791 Uncharacterized conser 36.4 12 0.00026 34.1 0.1 13 49-61 25-37 (133)
47 PF08076 TetM_leader: Tetracyc 35.6 14 0.0003 26.1 0.2 11 280-290 18-28 (28)
48 TIGR00595 priA primosomal prot 33.9 20 0.00043 39.6 1.2 35 5-49 214-261 (505)
49 KOG1813 Predicted E3 ubiquitin 33.8 18 0.00038 38.1 0.8 26 5-30 242-273 (313)
50 PF04828 GFA: Glutathione-depe 33.1 14 0.00031 29.9 -0.0 12 50-61 2-13 (92)
51 KOG4159 Predicted E3 ubiquitin 32.5 25 0.00054 38.2 1.7 35 6-49 86-126 (398)
52 smart00064 FYVE Protein presen 32.3 13 0.00029 29.5 -0.3 43 4-47 10-62 (68)
53 smart00249 PHD PHD zinc finger 32.2 21 0.00045 25.0 0.7 30 14-47 18-47 (47)
54 KOG4819 Uncharacterized conser 31.6 2.8E+02 0.006 25.3 7.7 50 420-469 49-101 (106)
55 COG3492 Uncharacterized protei 30.6 18 0.00038 32.4 0.1 17 18-34 41-57 (104)
56 COG2956 Predicted N-acetylgluc 30.1 21 0.00045 38.5 0.6 11 40-50 367-377 (389)
57 KOG1493 Anaphase-promoting com 30.0 30 0.00064 30.1 1.4 43 1-49 28-78 (84)
58 COG5222 Uncharacterized conser 29.8 28 0.00061 37.0 1.5 35 5-47 275-316 (427)
59 TIGR03321 alt_F1F0_F0_B altern 29.2 5.8E+02 0.012 25.5 10.5 20 404-423 29-48 (246)
60 KOG0827 Predicted E3 ubiquitin 28.9 30 0.00064 37.9 1.5 42 1-48 1-52 (465)
61 KOG2932 E3 ubiquitin ligase in 28.5 31 0.00068 36.8 1.5 25 14-49 107-131 (389)
62 PF05502 Dynactin_p62: Dynacti 28.1 19 0.0004 39.9 -0.2 32 15-48 2-33 (483)
63 KOG4185 Predicted E3 ubiquitin 26.7 36 0.00078 34.3 1.6 28 14-49 25-52 (296)
64 PF01363 FYVE: FYVE zinc finge 26.1 15 0.00032 29.3 -1.1 29 4-32 9-47 (69)
65 PRK06568 F0F1 ATP synthase sub 25.4 3.8E+02 0.0082 25.6 8.0 27 404-430 49-75 (154)
66 TIGR02132 phaR_Bmeg polyhydrox 24.6 5.5E+02 0.012 25.7 9.1 61 422-482 104-169 (189)
67 PRK13454 F0F1 ATP synthase sub 24.5 6.3E+02 0.014 24.2 10.3 19 404-422 55-73 (181)
68 KOG2357 Uncharacterized conser 24.4 2.3E+02 0.005 31.4 7.1 21 251-275 201-221 (440)
69 cd04790 HTH_Cfa-like_unk Helix 24.1 6.3E+02 0.014 24.0 9.5 38 379-416 36-75 (172)
70 KOG1818 Membrane trafficking a 23.2 24 0.00052 40.5 -0.4 42 5-47 166-217 (634)
71 PF13445 zf-RING_UBOX: RING-ty 23.1 35 0.00076 25.9 0.6 16 15-30 18-33 (43)
72 PRK05580 primosome assembly pr 22.3 44 0.00094 38.3 1.4 35 5-49 382-429 (679)
73 PRK08475 F0F1 ATP synthase sub 21.7 6.9E+02 0.015 23.6 10.2 29 403-431 45-73 (167)
74 KOG2509 Seryl-tRNA synthetase 21.6 4.2E+02 0.0092 29.7 8.5 77 424-500 95-179 (455)
75 PTZ00396 Casein kinase II subu 21.6 28 0.0006 35.8 -0.3 39 14-52 121-159 (251)
76 PRK04023 DNA polymerase II lar 21.5 53 0.0011 39.9 1.8 32 265-296 787-819 (1121)
77 KOG1039 Predicted E3 ubiquitin 21.2 51 0.0011 35.3 1.5 40 14-55 185-228 (344)
78 PF14570 zf-RING_4: RING/Ubox 20.9 76 0.0016 25.1 2.0 27 15-49 19-45 (48)
79 PRK14474 F0F1 ATP synthase sub 20.6 8.9E+02 0.019 24.5 10.4 21 404-424 29-49 (250)
80 PRK11595 DNA utilization prote 20.5 1.5E+02 0.0034 29.0 4.6 73 4-85 5-94 (227)
No 1
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=99.98 E-value=2.1e-33 Score=244.77 Aligned_cols=83 Identities=48% Similarity=0.976 Sum_probs=78.3
Q ss_pred hhhhcccCccc--------------ccc---ccccchhHHhhhhccCHHHhhcCCCccCCCCCCcccCccccccCCCCCc
Q 010750 3 FVAACKIMKKD--------------KYC---PIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPT 65 (502)
Q Consensus 3 f~~sChqcr~~--------------~~C---~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiCNCS~Crrk~G~~PT 65 (502)
.+.+|||||++ ..| +++||+.||+|||||++++++++++|+||+||||||||+|||++|+.||
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g~~PT 85 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRGWAPT 85 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCCCCCc
Confidence 57899999973 445 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCchhHHHHHH
Q 010750 66 GQLVQAAKATGFSSVSEMLL 85 (502)
Q Consensus 66 G~l~~~ak~~G~~SV~~yL~ 85 (502)
|+|+|.|+++||+||||||+
T Consensus 86 g~l~~~a~~~G~~sv~~~L~ 105 (105)
T PF10497_consen 86 GILYHKAKALGFKSVAHYLI 105 (105)
T ss_pred HHHHHHHHHhChhHHHHHhC
Confidence 99999999999999999995
No 2
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=99.51 E-value=1.9e-14 Score=115.25 Aligned_cols=63 Identities=32% Similarity=0.474 Sum_probs=56.7
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCCchhHHHHHHHcccccccCCCccHHHHHHHHHHHHhhccCC
Q 010750 272 PEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKDMGE 337 (502)
Q Consensus 272 ~E~vGdaLmvlEFC~sFGk~L~L~~gqpE~~Leel~~g~~~~r~~~~llvelh~~LLslI~eD~gE 337 (502)
++.|||+|||||||++||++|+|+|+++ .++|++.|.+++ .+.++++|+|+.||+.|++|.|+
T Consensus 1 ~~~~~d~l~V~eFl~~F~~~L~L~~f~~--~l~~f~~Al~~~-~~~~ll~ei~~~LL~~i~~d~~~ 63 (63)
T smart00571 1 NEAFGDLLMVYEFLRSFGKVLGLSPFRA--TLEDFIAALKCR-DQNGLLTEVHVVLLRAILKDEGE 63 (63)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCcchh--hHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999776 688889888664 67799999999999999999875
No 3
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=99.40 E-value=4.6e-13 Score=151.35 Aligned_cols=144 Identities=24% Similarity=0.348 Sum_probs=112.2
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhhhcCCCCchhHHHHHHHcccccccCCCccHHHHHHHHHHHHhhccCCCCC-C
Q 010750 263 TTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKDMGEESP-L 341 (502)
Q Consensus 263 t~vag~~lP~E~vGdaLmvlEFC~sFGk~L~L~~gqpE~~Leel~~g~~~~r~~~~llvelh~~LLslI~eD~gE~~~-l 341 (502)
.+--|+-||++.|=+||-|+||+++|+.+|-|+| |-++||+.+. .-.+++++++++|++||++|+.+.+..+. .
T Consensus 180 ~SSedi~IPne~Vm~alsIYevLRsF~~~LrisP----F~feDFcaAL-~~~~~ssLlaeVHvaLLrA~lr~eD~~~Thf 254 (1414)
T KOG1473|consen 180 ESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISP----FRFEDFCAAL-ISHEQSSLLAEVHVALLRALLREEDRLSTHF 254 (1414)
T ss_pred CcccccCCcHHHHHHHHHHHHHHHhhcceEEeCC----ccHHHHHHHH-HhcCchhHHHHHHHHHHHHHhhhhhhccccc
Confidence 3455799999999999999999999999999999 4455555443 23458899999999999999966655433 3
Q ss_pred CCc------------ccccchHHHHHhhhhcCCCCCCCCCCCccc--cCCcceeccCcchhhhHHHHHHHHhhhhHHHHH
Q 010750 342 SST------------SGKHSWLQALSKCVSNSKCPLNDIPSNCFD--CGGDGYHQLNGSKKLKLLNFLCDEALGTTVLRN 407 (502)
Q Consensus 342 s~t------------~~~~sW~~~L~d~Le~~~~~~kELpld~l~--~G~~~Y~~L~~s~KLkILn~LCdeaLtT~~iR~ 407 (502)
++. --.-+|+++|-.|++--++...-++ +-|. -|+..|...+.+-||+||++|||+.|++.++|+
T Consensus 255 s~~d~KdsvnI~l~liD~lTWPevLrqY~ea~~~ad~~v~-~~~n~fv~~~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~ 333 (1414)
T KOG1473|consen 255 SPLDSKDSVNIDLYLIDTLTWPEVLRQYFEADKHADGPVW-DIFNPFVVEDEYPYRPVSNKLKILQFLCDQFLTVNSLRD 333 (1414)
T ss_pred CccccccceeeeeehhccccHHHHHHHHHHhccccCcchh-hhhccccccccccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 210 0277999999999986654322221 1222 278889999999999999999999999999999
Q ss_pred HHHHH
Q 010750 408 WIDDQ 412 (502)
Q Consensus 408 ~Ide~ 412 (502)
.|+..
T Consensus 334 e~~se 338 (1414)
T KOG1473|consen 334 EIDSE 338 (1414)
T ss_pred HHhcc
Confidence 99865
No 4
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=99.18 E-value=2.6e-11 Score=96.30 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=48.4
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCCchhHHHHHHHcccccccCCCccHHHHHHHHHHHHhhccC
Q 010750 272 PEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELMGGRSRRRGLGFPMVQIHIQLLSLVQKDMG 336 (502)
Q Consensus 272 ~E~vGdaLmvlEFC~sFGk~L~L~~gqpE~~Leel~~g~~~~r~~~~llvelh~~LLslI~eD~g 336 (502)
.+.||++||||+||++||++|+|++. .+++++.+..+ ..+.++++|+|+.||++|+.+.+
T Consensus 1 ~~~~~~~L~v~~Fl~~F~~~L~L~~f----tlddf~~AL~~-~~~~~ll~ei~~~LL~~l~~~~~ 60 (61)
T PF02791_consen 1 GEAFGDLLMVWEFLNTFGEVLGLSPF----TLDDFEQALLC-NDPSGLLAEIHCALLKALLADEE 60 (61)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCcC----CHHHHHHHHcC-CCcchhHHHHHHHHHHHHHhccC
Confidence 37899999999999999999999995 45555544423 23445999999999999998864
No 5
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=98.21 E-value=5.9e-07 Score=68.30 Aligned_cols=39 Identities=33% Similarity=0.617 Sum_probs=33.8
Q ss_pred CcceeccCcchhhhHHHHHHHHhhhhHHHHHHHHHHhHH
Q 010750 377 GDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSE 415 (502)
Q Consensus 377 ~~~Y~~L~~s~KLkILn~LCdeaLtT~~iR~~Ide~~ee 415 (502)
..+|+.|+|..||.||++|||.+|++..+|+.|+++.++
T Consensus 11 ~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e~ 49 (50)
T PF15612_consen 11 TGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREEE 49 (50)
T ss_dssp CSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT-
T ss_pred cCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhcc
Confidence 456999999999999999999999999999999998765
No 6
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=96.63 E-value=0.00045 Score=78.51 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=62.4
Q ss_pred hhhcccCcc--------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCCcccCccccccCCCCCchHHHHHHHHh
Q 010750 4 VAACKIMKK--------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGHQPTGQLVQAAKAT 75 (502)
Q Consensus 4 ~~sChqcr~--------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiCNCS~Crrk~G~~PTG~l~~~ak~~ 75 (502)
..+||+|-. |+.|+..||-.|+..+|.-.- ..+..-.|+.|+..|||+.|....++.||-+..+.|...
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~---~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~ 305 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLS---KEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLD 305 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccch---HhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhh
Confidence 368999974 799999999999999993222 355666899999999999999999999999888777666
Q ss_pred CchhHHHH
Q 010750 76 GFSSVSEM 83 (502)
Q Consensus 76 G~~SV~~y 83 (502)
=..-||+.
T Consensus 306 ~~~~~h~~ 313 (889)
T KOG1356|consen 306 LSDRVHAV 313 (889)
T ss_pred HHHHHHHH
Confidence 55555553
No 7
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.24 E-value=0.0079 Score=62.15 Aligned_cols=40 Identities=30% Similarity=0.792 Sum_probs=33.3
Q ss_pred CchhhhcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 1 MDFVAACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 1 ~df~~sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
+|-+-.||+|.- -..|++.||+.|++...|+.+ .||.||.
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp---------~CP~Cr~ 67 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP---------FCPVCRE 67 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCC---------CCccccc
Confidence 366778999994 267999999999998877666 7999997
No 8
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.57 E-value=0.16 Score=61.88 Aligned_cols=174 Identities=21% Similarity=0.213 Sum_probs=99.4
Q ss_pred hhhhccccccCcccccccCCCCccccccccccCCCCCchhHHHHHHHHHHHHhhhcCCCCchhHHH----HHHHcccccc
Q 010750 238 LEAVSESRGVNKCITEVPLPRSATLTTVAGAEIPPEDVGHALQFLEFCAAFGKVLDLKKGQAECII----RELMGGRSRR 313 (502)
Q Consensus 238 ~~~~~k~r~~~e~~~e~~LP~gt~lt~vag~~lP~E~vGdaLmvlEFC~sFGk~L~L~~gqpE~~L----eel~~g~~~~ 313 (502)
....++++..++|.|+..+ +|+..|||.+||++|.+.|..+......++.++. +++..+. ..
T Consensus 498 ~~~~~~~~~a~e~~d~~~~-------------~~~~~f~d~~~v~~~~~~~~~~~~~e~~~~~~~k~~~~ee~~~~~-~~ 563 (1404)
T KOG1245|consen 498 LEQFSEKLAALECKDEEER-------------LPNSSFGDNLKVLERLSCFTGIKSTEAKFKDDIKRLPREEALSDA-TE 563 (1404)
T ss_pred HHhhhcccchhhhcChhhh-------------ccccchhHHHHHHHHHHHhhhcccHHhhhhhhhhhhHHHHHHhhh-hh
Confidence 4556667777888887776 8999999999999999999988888887776554 3333322 11
Q ss_pred cC-CC---ccHHHHHHHHHHHHhhccCCCCC-CC---Cc--------ccccc------hHHHHHhhhhcCCCCCCC-CCC
Q 010750 314 RG-LG---FPMVQIHIQLLSLVQKDMGEESP-LS---ST--------SGKHS------WLQALSKCVSNSKCPLND-IPS 370 (502)
Q Consensus 314 r~-~~---~llvelh~~LLslI~eD~gE~~~-ls---~t--------~~~~s------W~~~L~d~Le~~~~~~kE-Lpl 370 (502)
.+ .. .-++++...+...+.++.++... +. .+ .+... =-.-+.-++.+-|+-... -|.
T Consensus 564 ~~~~~~~~~~~~~~~~~i~d~~~~~~~~~g~~~~~~~~d~~~~~~l~rl~~~~s~~~~~~~~~~~~~~~~g~~~~~d~~~ 643 (1404)
T KOG1245|consen 564 SGEENPSLEEVVQTELEIADEIEKDNGENGLKLKILEEDLKSLTELLRLCLEFSDCLNQVETLGGRLKVLGFDENEDVPA 643 (1404)
T ss_pred ccccchHHHHHHHHHHHHHHhhccccccccccccccccchhhhhhhhhhhhhcchhHHHHHHHhhhhhhhccccccccch
Confidence 11 11 12222222355555566666533 22 11 00000 000001111111110000 000
Q ss_pred Ccccc---------CCcceeccCcchhhhHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHhHH
Q 010750 371 NCFDC---------GGDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWIDDQNSEFVEKVKESRE 425 (502)
Q Consensus 371 d~l~~---------G~~~Y~~L~~s~KLkILn~LCdeaLtT~~iR~~Ide~~ee~~e~~~~aRe 425 (502)
..|.+ -.-.|..|.+..|++||..||+..|.+..+++.|+..-.+..+++.++.+
T Consensus 644 ~~i~~e~~~~~~kl~~~~v~dl~~~~~~~il~~~~~~l~~~~e~~d~i~~~~~~~~eLk~~~~~ 707 (1404)
T KOG1245|consen 644 LEILREHEELMEKLHTLLVFDLRAEEKDKILRQLCQRLLMLGEVVDHIEDRQQLTRELKQEITE 707 (1404)
T ss_pred HHHHHhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhhhh
Confidence 00000 12458999999999999999999999999999999933344555554443
No 9
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=0.19 Score=55.25 Aligned_cols=45 Identities=31% Similarity=0.845 Sum_probs=33.2
Q ss_pred hhcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCCcccCccccccCCC
Q 010750 5 AACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKRGH 62 (502)
Q Consensus 5 ~sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiCNCS~Crrk~G~ 62 (502)
..|.+|=. ...|++.||..||.. | |.=+.|+++|.|..|+..-++
T Consensus 187 ~~CPICL~~~~~p~~t~CGHiFC~~CiLq-y------------~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRTNCGHIFCGPCILQ-Y------------WNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CcCCcccCCCCcccccccCceeeHHHHHH-H------------HhhhcccCCccCCchhhhccc
Confidence 45778763 356999999999994 4 111178899999999877554
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.04 E-value=0.4 Score=33.38 Aligned_cols=28 Identities=29% Similarity=0.673 Sum_probs=21.9
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
..|++.||..|+...+.. ....||.|+.
T Consensus 16 ~~C~H~~c~~C~~~~~~~--------~~~~Cp~C~~ 43 (45)
T cd00162 16 LPCGHVFCRSCIDKWLKS--------GKNTCPLCRT 43 (45)
T ss_pred cCCCChhcHHHHHHHHHh--------CcCCCCCCCC
Confidence 349999999999976532 5668999985
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=86.60 E-value=0.5 Score=35.73 Aligned_cols=35 Identities=29% Similarity=0.637 Sum_probs=27.2
Q ss_pred hcccCccc------cccccc-cchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 6 ACKIMKKD------KYCPIK-FCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 6 sChqcr~~------~~C~~~-fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
.|..|... ..|++. ||..|+...+. ....||.||.
T Consensus 4 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---------~~~~CP~Cr~ 45 (50)
T PF13920_consen 4 ECPICFENPRDVVLLPCGHLCFCEECAERLLK---------RKKKCPICRQ 45 (50)
T ss_dssp B-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH---------TTSBBTTTTB
T ss_pred CCccCCccCCceEEeCCCChHHHHHHhHHhcc---------cCCCCCcCCh
Confidence 57777743 569999 99999997763 6779999986
No 12
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=86.26 E-value=0.45 Score=34.12 Aligned_cols=27 Identities=30% Similarity=0.738 Sum_probs=21.7
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRC 47 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~C 47 (502)
..|++.||..||.+.+.. ...-.||.|
T Consensus 15 ~~C~H~fC~~C~~~~~~~-------~~~~~CP~C 41 (41)
T PF00097_consen 15 LPCGHSFCRDCLRKWLEN-------SGSVKCPLC 41 (41)
T ss_dssp TTTSEEEEHHHHHHHHHH-------TSSSBTTTT
T ss_pred ecCCCcchHHHHHHHHHh-------cCCccCCcC
Confidence 569999999999987743 555679987
No 13
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=85.76 E-value=0.25 Score=52.33 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=28.9
Q ss_pred chhhhcccCccc------cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 2 DFVAACKIMKKD------KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 2 df~~sChqcr~~------~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
|-.-.||+|... ..|++.||..|++.... ..-.||-|+-
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~---------~~p~CP~C~~ 65 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS---------YKPQCPTCCV 65 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc---------cCCCCCceec
Confidence 444579999942 56999999999996553 3347888864
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=85.45 E-value=0.51 Score=35.22 Aligned_cols=29 Identities=34% Similarity=0.858 Sum_probs=18.4
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRC 47 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~C 47 (502)
-.|++.||..||....... ....+.||.|
T Consensus 14 l~CGH~FC~~Cl~~~~~~~-----~~~~~~CP~C 42 (42)
T PF15227_consen 14 LPCGHSFCRSCLERLWKEP-----SGSGFSCPEC 42 (42)
T ss_dssp -SSSSEEEHHHHHHHHCCS-----SSST---SSS
T ss_pred cCCcCHHHHHHHHHHHHcc-----CCcCCCCcCC
Confidence 4599999999999766432 2333899987
No 15
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.02 E-value=0.71 Score=48.28 Aligned_cols=37 Identities=22% Similarity=0.591 Sum_probs=27.3
Q ss_pred hhcccCcc----c-------cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 5 AACKIMKK----D-------KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 5 ~sChqcr~----~-------~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
..|..|+. . ..|++.||..|+.+-+. ...-.||.|+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~--------~~~~~CP~C~~ 51 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV--------RGSGSCPECDT 51 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc--------CCCCCCCCCCC
Confidence 57999995 2 24999999999997652 23348997764
No 16
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.84 E-value=0.74 Score=49.57 Aligned_cols=42 Identities=29% Similarity=0.558 Sum_probs=31.5
Q ss_pred hhhcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCCcccCc
Q 010750 4 VAACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCS 54 (502)
Q Consensus 4 ~~sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiCNCS 54 (502)
.-.|..|.. -..|++.||..|+...... ...||.|+..+..+
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~---------~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN---------QPKCPLCRAEDQES 73 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC---------CCCCCCCCCccccc
Confidence 347999984 2579999999999965532 23799999987644
No 17
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=84.74 E-value=0.64 Score=45.72 Aligned_cols=48 Identities=19% Similarity=0.443 Sum_probs=29.1
Q ss_pred hhcccCcc------ccccccccchhHHhhhh--ccCHHH----h-hcCCCccCCCCCCccc
Q 010750 5 AACKIMKK------DKYCPIKFCHKCLLNRY--GEKAED----A-ALLDGWNCPRCRGICN 52 (502)
Q Consensus 5 ~sChqcr~------~~~C~~~fC~~CL~nRY--ge~v~e----v-~~~~~W~CP~CRgiCN 52 (502)
..|.+|.. -..|++.||..||.... .....+ . .......||.||.--+
T Consensus 19 ~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 19 FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred cCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 35778874 25699999999997532 111100 0 0234568999998443
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=84.43 E-value=0.63 Score=34.56 Aligned_cols=26 Identities=38% Similarity=0.812 Sum_probs=21.9
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
..|++.||..|+.... ...-.||.||
T Consensus 18 ~~CgH~~C~~C~~~~~---------~~~~~CP~C~ 43 (44)
T PF14634_consen 18 TSCGHIFCEKCLKKLK---------GKSVKCPICR 43 (44)
T ss_pred cccCCHHHHHHHHhhc---------CCCCCCcCCC
Confidence 4599999999999876 5566899997
No 19
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=80.98 E-value=0.57 Score=34.44 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=19.0
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
-.|++.||..||...... ...||.||
T Consensus 19 l~C~H~fh~~Ci~~~~~~---------~~~CP~CR 44 (44)
T PF13639_consen 19 LPCGHVFHRSCIKEWLKR---------NNSCPVCR 44 (44)
T ss_dssp ETTSEEEEHHHHHHHHHH---------SSB-TTTH
T ss_pred ccCCCeeCHHHHHHHHHh---------CCcCCccC
Confidence 349999999999976522 23999997
No 20
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=80.47 E-value=1.1 Score=32.35 Aligned_cols=25 Identities=28% Similarity=0.766 Sum_probs=18.6
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRC 47 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~C 47 (502)
..|++.||..|+.+... . ...||.|
T Consensus 15 ~~CGH~fC~~C~~~~~~--------~-~~~CP~C 39 (39)
T PF13923_consen 15 TPCGHSFCKECIEKYLE--------K-NPKCPVC 39 (39)
T ss_dssp CTTSEEEEHHHHHHHHH--------C-TSB-TTT
T ss_pred CCCCCchhHHHHHHHHH--------C-cCCCcCC
Confidence 56999999999986542 2 3789987
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=79.88 E-value=1.1 Score=29.93 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=20.1
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRC 47 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~C 47 (502)
..|++.||..|+...+. .....||.|
T Consensus 14 ~~C~H~~c~~C~~~~~~--------~~~~~CP~C 39 (39)
T smart00184 14 LPCGHTFCRSCIRKWLK--------SGNNTCPIC 39 (39)
T ss_pred ecCCChHHHHHHHHHHH--------hCcCCCCCC
Confidence 45999999999997663 344578877
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=78.15 E-value=1.2 Score=44.96 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=25.4
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCCCc
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGI 50 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgi 50 (502)
..|.+.||..|+..+-.... .......||-||..
T Consensus 195 ~~CnHsFCl~CIr~Wr~~r~---~~~~~rsCPiCR~~ 228 (242)
T PHA02926 195 DSCNHIFCITCINIWHRTRR---ETGASDNCPICRTR 228 (242)
T ss_pred CCCCchHHHHHHHHHHHhcc---ccCcCCcCCCCcce
Confidence 37999999999998775322 13456789999974
No 23
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.03 E-value=46 Score=37.86 Aligned_cols=187 Identities=20% Similarity=0.214 Sum_probs=106.1
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-------------------cccccccCCCccHHHHHHHHHHH
Q 010750 270 IPPEDVGHALQFLEFCAAFGKVLDLKKGQAECIIRELM-------------------GGRSRRRGLGFPMVQIHIQLLSL 330 (502)
Q Consensus 270 lP~E~vGdaLmvlEFC~sFGk~L~L~~gqpE~~Leel~-------------------~g~~~~r~~~~llvelh~~LLsl 330 (502)
+++=.+=|++-+|.|+=.| |+=.=+||..+-+|+. .|..| +.+.|..+++-|.++
T Consensus 97 l~~PS~KdF~~iFkfLY~~---Ldp~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH---~WP~iL~mlhWlvdl 170 (581)
T KOG0995|consen 97 LMKPSVKDFIAIFKFLYGF---LDPDYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPH---NWPHILGMLHWLVDL 170 (581)
T ss_pred cCCCccccHHHHHHHHHhc---cCCCcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCC---ccHHHHHHHHHHHHH
Confidence 4444566888888888766 4444456666666655 12223 556677777777777
Q ss_pred HhhccCC--CCCC-C---Cccccc-chHHHHHhhhhcCCCCCCCCCCCccccCCcceeccCcchhhhHHHHHHHHhhhhH
Q 010750 331 VQKDMGE--ESPL-S---STSGKH-SWLQALSKCVSNSKCPLNDIPSNCFDCGGDGYHQLNGSKKLKLLNFLCDEALGTT 403 (502)
Q Consensus 331 I~eD~gE--~~~l-s---~t~~~~-sW~~~L~d~Le~~~~~~kELpld~l~~G~~~Y~~L~~s~KLkILn~LCdeaLtT~ 403 (502)
|.-..-. .+++ + .+...+ -|++|+++.-. +|-+|.+.|..++..-|.++=.+-=+.+-.+.
T Consensus 171 I~~~t~~v~~~~l~q~~~ed~~m~k~f~dy~~~~Y~------------~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie 238 (581)
T KOG0995|consen 171 IRINTALVEDSPLEQEEAEDKTMNKLFFDYTIRSYT------------SFLKGEDNSSELEDELKHRLEKYFTSIANEIE 238 (581)
T ss_pred HHHhHHHhhccchhccchHHHHHHHHHHHHHHHHHH------------HHhccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 7622211 1111 1 122244 68887776541 24557778888988888876555444555566
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHh-hcCCCCChhhhHhHHHHHHHHHHHHHHHH
Q 010750 404 VLRNWIDDQNSEFVEKVKESREKFVAAKEKEKKLKQKLQDEVAKAII-TNGAPLSISEHEAIVSEIKRKAAEAHSEM 479 (502)
Q Consensus 404 ~iR~~Ide~~ee~~e~~~~aReka~aAk~Keke~keklk~e~ak~~~-~nGa~l~~ee~~~~iS~ik~~~~~~~a~~ 479 (502)
.+-..-++-+++..+ +++..-+.+==++.+..|++++.|..- +++.-=-...-...+++.++|.+.+..|.
T Consensus 239 ~l~~~n~~l~e~i~e-----~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~ 310 (581)
T KOG0995|consen 239 DLKKTNRELEEMINE-----REKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEI 310 (581)
T ss_pred HHHHHHHHHHHHHHH-----HhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555553 333333333344556778888776555 33322222344556666666665555544
No 24
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.09 E-value=0.96 Score=48.18 Aligned_cols=48 Identities=23% Similarity=0.536 Sum_probs=38.2
Q ss_pred hhcccCcc-------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCCcccCccccccC
Q 010750 5 AACKIMKK-------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICNCSLCMKKR 60 (502)
Q Consensus 5 ~sChqcr~-------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiCNCS~Crrk~ 60 (502)
.+|.+|-. -+.|.+.||..|++..+ ...+-.||-||--|-...-++.+
T Consensus 44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~--------r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHRFCFDCIWKAL--------RSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHHHHHHHHHHHH--------HhcCCCCchHHhhccccccCCCC
Confidence 46777753 36799999999999654 56777999999998888877665
No 25
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.67 E-value=2.3 Score=39.48 Aligned_cols=35 Identities=31% Similarity=0.774 Sum_probs=27.0
Q ss_pred hhcccCccc------cccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 5 AACKIMKKD------KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 5 ~sChqcr~~------~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
..|.+|-.. -.|++.||..||..--. ....||.||
T Consensus 14 ~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~---------~~~~Cp~cr 54 (386)
T KOG2177|consen 14 LTCPICLEYFREPVLLPCGHNFCRACLTRSWE---------GPLSCPVCR 54 (386)
T ss_pred ccChhhHHHhhcCccccccchHhHHHHHHhcC---------CCcCCcccC
Confidence 468888741 34999999999986553 558999999
No 26
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.11 E-value=3.5 Score=41.65 Aligned_cols=37 Identities=27% Similarity=0.662 Sum_probs=26.1
Q ss_pred cccCccc------cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 7 CKIMKKD------KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 7 Chqcr~~------~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
|-+|=.. ..|++-||-+||+.+-.. ....-.||.|++
T Consensus 50 CNICLd~akdPVvTlCGHLFCWpClyqWl~~------~~~~~~cPVCK~ 92 (230)
T KOG0823|consen 50 CNICLDLAKDPVVTLCGHLFCWPCLYQWLQT------RPNSKECPVCKA 92 (230)
T ss_pred eeeeccccCCCEEeecccceehHHHHHHHhh------cCCCeeCCcccc
Confidence 6666632 669999999999976521 334446898875
No 27
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=67.01 E-value=3.4 Score=45.44 Aligned_cols=68 Identities=26% Similarity=0.560 Sum_probs=41.2
Q ss_pred hhcccCccccccc-----cccchhHHhhhhccCHHH--hhcC-CCccCCCCCCc------c-------------------
Q 010750 5 AACKIMKKDKYCP-----IKFCHKCLLNRYGEKAED--AALL-DGWNCPRCRGI------C------------------- 51 (502)
Q Consensus 5 ~sChqcr~~~~C~-----~~fC~~CL~nRYge~v~e--v~~~-~~W~CP~CRgi------C------------------- 51 (502)
..||+.| |..|. -.||..||.+-=.-++.- -.=. .=|.||.|... -
T Consensus 9 ~~C~~ir-c~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~~~~~~~~~~~~~~~~~~~~~~~l 87 (483)
T PF05502_consen 9 EHCHKIR-CPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSVRASDTPPSPPDPSSDSGGKPYYL 87 (483)
T ss_pred ccccccC-ChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCcceeEecccccccccccccCCCCCEEE
Confidence 3455554 66776 589999998533222210 0011 23899999861 2
Q ss_pred cCccccc---cCCC---CCchHHHHHHH
Q 010750 52 NCSLCMK---KRGH---QPTGQLVQAAK 73 (502)
Q Consensus 52 NCS~Crr---k~G~---~PTG~l~~~ak 73 (502)
+|++||= .-|+ .|||+....++
T Consensus 88 ~C~~C~Wss~~igi~Fdkpt~l~~QL~k 115 (483)
T PF05502_consen 88 SCSYCRWSSRDIGIKFDKPTGLRAQLSK 115 (483)
T ss_pred ECCCceeeccccCccccCchhHHHHHHh
Confidence 7999953 2355 68887776654
No 28
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=61.55 E-value=4.8 Score=33.57 Aligned_cols=32 Identities=31% Similarity=0.787 Sum_probs=16.8
Q ss_pred hcccCcc-------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 6 ACKIMKK-------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 6 sChqcr~-------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
.|..|.. -..|.+.||..|+....|. .||.|+
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~-----------~CPvC~ 47 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS-----------ECPVCH 47 (65)
T ss_dssp S-SSS-S--SS-B---SSS--B-TTTGGGGTTT-----------B-SSS-
T ss_pred CCcHHHHHhcCCceeccCccHHHHHHhHHhcCC-----------CCCCcC
Confidence 4677763 2669999999999876541 388886
No 29
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=60.13 E-value=3.9 Score=45.97 Aligned_cols=40 Identities=28% Similarity=0.698 Sum_probs=30.1
Q ss_pred hcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 6 ACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 6 sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
.|..|.. -..|.+.||.-|+. -| +....++.+-.||.|--
T Consensus 538 ~C~lc~d~aed~i~s~ChH~FCrlCi~-ey---v~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 538 ECGLCHDPAEDYIESSCHHKFCRLCIK-EY---VESFMENNNVTCPVCHI 583 (791)
T ss_pred eecccCChhhhhHhhhhhHHHHHHHHH-HH---HHhhhcccCCCCccccc
Confidence 4777763 37799999999998 34 55666777788998853
No 30
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.63 E-value=4.5 Score=42.52 Aligned_cols=37 Identities=35% Similarity=0.713 Sum_probs=26.4
Q ss_pred hhcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 5 AACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 5 ~sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
..|.+|.+ ...|.+.||+-|++.-|- +..-.||.||+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~--------ndk~~CavCR~ 50 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYK--------NDKKTCAVCRF 50 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhh--------cCCCCCceecC
Confidence 35666664 355899999999999883 34445777776
No 31
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.39 E-value=2.3 Score=40.27 Aligned_cols=40 Identities=33% Similarity=0.693 Sum_probs=24.1
Q ss_pred hhhcccCcc----------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 4 VAACKIMKK----------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 4 ~~sChqcr~----------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
.++||+|.. |..|..+||.+|-- -+.---....|.|-.|+
T Consensus 65 datC~IC~KTKFADG~GH~C~YCq~r~CARCGG-----rv~lrsNKv~wvcnlc~ 114 (169)
T KOG3799|consen 65 DATCGICHKTKFADGCGHNCSYCQTRFCARCGG-----RVSLRSNKVMWVCNLCR 114 (169)
T ss_pred CcchhhhhhcccccccCcccchhhhhHHHhcCC-----eeeeccCceEEeccCCc
Confidence 578999984 46677888877743 22110134567766554
No 32
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=58.13 E-value=7.1 Score=32.21 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=19.5
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
..|++.|...||.... .....||-||
T Consensus 48 ~~C~H~FH~~Ci~~Wl---------~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWL---------KQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHH---------TTSSB-TTSS
T ss_pred cccCCCEEHHHHHHHH---------hcCCcCCCCC
Confidence 4599999999998665 2333999998
No 33
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=58.09 E-value=9 Score=29.44 Aligned_cols=37 Identities=8% Similarity=-0.079 Sum_probs=26.2
Q ss_pred hcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCCcc
Q 010750 6 ACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGIC 51 (502)
Q Consensus 6 sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiC 51 (502)
.|..|+. ...|++.||..|+...... ...||.|+..+
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~---------~~~cP~~~~~~ 45 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS---------HGTDPVTGQPL 45 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH---------CCCCCCCcCCC
Confidence 3666663 3568899999999975522 45899998644
No 34
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=54.47 E-value=5.7 Score=43.36 Aligned_cols=37 Identities=32% Similarity=0.725 Sum_probs=28.4
Q ss_pred hhcccCccc------cccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 5 AACKIMKKD------KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 5 ~sChqcr~~------~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
.-|++|-.+ -.|++..|..||.++-. .+..-.||+||
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~-------sd~gq~CPFCR 412 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQD-------SDEGQTCPFCR 412 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcc-------cCCCCCCCcee
Confidence 358899843 46999999999998763 23456899997
No 35
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=49.54 E-value=5.4 Score=42.24 Aligned_cols=37 Identities=24% Similarity=0.645 Sum_probs=27.5
Q ss_pred hhhcccCccc-------cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 4 VAACKIMKKD-------KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 4 ~~sChqcr~~-------~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
-.+|+-|++- .-|-+.||..||....-+ .-.||.|.-
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~---------~~~CP~C~i 58 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE---------SKYCPTCDI 58 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH---------hccCCccce
Confidence 3578888863 559999999999965422 458998864
No 36
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=47.63 E-value=16 Score=31.94 Aligned_cols=43 Identities=28% Similarity=0.542 Sum_probs=31.2
Q ss_pred CchhhhcccCcc----c----cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 1 MDFVAACKIMKK----D----KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 1 ~df~~sChqcr~----~----~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
|.|-+.|..|+. + ..|++.|=..||...-... ...-.||-||.
T Consensus 29 ~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~------~~~~~CPmCR~ 79 (85)
T PF12861_consen 29 MPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ------SSKGQCPMCRQ 79 (85)
T ss_pred cccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccc------cCCCCCCCcCC
Confidence 457788888883 2 3688999999999776432 22458999985
No 37
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=42.68 E-value=9.6 Score=38.28 Aligned_cols=25 Identities=40% Similarity=0.902 Sum_probs=21.6
Q ss_pred hcccCccc------cccccccchhHHhhhhc
Q 010750 6 ACKIMKKD------KYCPIKFCHKCLLNRYG 30 (502)
Q Consensus 6 sChqcr~~------~~C~~~fC~~CL~nRYg 30 (502)
-|.+|+.. ..|++.||+.|--.+|.
T Consensus 198 ~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~ 228 (259)
T COG5152 198 LCGICKKDYESPVVTECGHSFCSLCAIRKYQ 228 (259)
T ss_pred eehhchhhccchhhhhcchhHHHHHHHHHhc
Confidence 69999953 56999999999999994
No 38
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.70 E-value=7.1 Score=41.12 Aligned_cols=44 Identities=25% Similarity=0.570 Sum_probs=25.6
Q ss_pred chhhhcccCccccccccccchhHHhhhhccCHH----HhhcCCCccCCCCCC
Q 010750 2 DFVAACKIMKKDKYCPIKFCHKCLLNRYGEKAE----DAALLDGWNCPRCRG 49 (502)
Q Consensus 2 df~~sChqcr~~~~C~~~fC~~CL~nRYge~v~----ev~~~~~W~CP~CRg 49 (502)
|-|+.|..| .|+-.+|..||...|----. ++.....-.||-||.
T Consensus 315 ~~ga~c~nc----~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~ 362 (381)
T KOG3899|consen 315 DIGAPCENC----ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRK 362 (381)
T ss_pred ccCCccccc----ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhh
Confidence 344544443 57889999999986632221 222334445776664
No 39
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=11 Score=41.77 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=29.4
Q ss_pred hhhhcccCcc-----------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 3 FVAACKIMKK-----------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 3 f~~sChqcr~-----------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
....|-+|+. .-.|++.||..||+.+.-. .-.||.||=
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er---------~qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER---------QQTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH---------hCcCCcchh
Confidence 4567888873 2359999999999998832 458999996
No 40
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=40.01 E-value=91 Score=32.91 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=61.9
Q ss_pred hHHHHHHH-cccccccCCCccHHHHHHHHHHHHh--hccCCCCCCCCcccccchHHHHHhhhhcCCCCCCCCCCCccccC
Q 010750 300 ECIIRELM-GGRSRRRGLGFPMVQIHIQLLSLVQ--KDMGEESPLSSTSGKHSWLQALSKCVSNSKCPLNDIPSNCFDCG 376 (502)
Q Consensus 300 E~~Leel~-~g~~~~r~~~~llvelh~~LLslI~--eD~gE~~~ls~t~~~~sW~~~L~d~Le~~~~~~kELpld~l~~G 376 (502)
|..+..++ .|. .+.-+.++...|-+-|- -+-+|.-.-..+ .++|.-.|..||.+-+||...|....+.
T Consensus 17 e~~l~~a~~~G~-----~s~~f~~L~~wL~~EL~~l~~leE~v~~~dd--~~~f~~Els~~L~El~CPy~~L~~G~~~-- 87 (318)
T PF10239_consen 17 EQALSKALEAGA-----SSPEFRELCAWLASELKTLCKLEESVSSPDD--AESFLLELSGFLKELGCPYSALTSGDIS-- 87 (318)
T ss_pred HHHHHHHHHcCC-----CChHHHHHHHHHHHHHHHHhccccccCCCch--HHHHHHHHHHHHHhcCCCcHHHcCCcch--
Confidence 34454444 344 34555665555555444 111121111123 5679999999999999887777655444
Q ss_pred CcceeccCcchhhhHHHHHHHHhhhhHHHHHHH
Q 010750 377 GDGYHQLNGSKKLKLLNFLCDEALGTTVLRNWI 409 (502)
Q Consensus 377 ~~~Y~~L~~s~KLkILn~LCdeaLtT~~iR~~I 409 (502)
=...+++.+|.+|.|||.|+-++..++-.-
T Consensus 88 ---~rl~~~~~~l~LL~fL~sELqaarl~~~k~ 117 (318)
T PF10239_consen 88 ---DRLQSKEDRLLLLEFLCSELQAARLLAKKK 117 (318)
T ss_pred ---hhhcCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334677889999999999999888776543
No 41
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.20 E-value=11 Score=28.79 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=26.8
Q ss_pred hhcccCcc----------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 5 AACKIMKK----------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 5 ~sChqcr~----------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
..|..|.. +..|+..||..|+..+--... .....+..+|-.|.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~-~~~~~~~rvC~~C~ 55 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPS-MGGGKPVRVCDSCY 55 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeecCc-ccCCCccEeChHHh
Confidence 45667763 477999999999987643221 12234556666654
No 42
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.87 E-value=13 Score=31.22 Aligned_cols=17 Identities=47% Similarity=0.913 Sum_probs=12.0
Q ss_pred cccchhHHhhhhccCHH
Q 010750 18 IKFCHKCLLNRYGEKAE 34 (502)
Q Consensus 18 ~~fC~~CL~nRYge~v~ 34 (502)
..||+.||.+.|.+-..
T Consensus 10 AgFCRNCLskWy~~aA~ 26 (68)
T PF06844_consen 10 AGFCRNCLSKWYREAAE 26 (68)
T ss_dssp HS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36999999999976654
No 43
>PRK14873 primosome assembly protein PriA; Provisional
Probab=38.62 E-value=14 Score=42.30 Aligned_cols=34 Identities=29% Similarity=0.779 Sum_probs=22.8
Q ss_pred hhcccCc---cccccc----------cccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 5 AACKIMK---KDKYCP----------IKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 5 ~sChqcr---~~~~C~----------~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
-.|+.|+ +|+.|. ...|+.|-+. . ..|.||.|-+
T Consensus 384 l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~----------~-~p~~Cp~Cgs 430 (665)
T PRK14873 384 LACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRA----------A-PDWRCPRCGS 430 (665)
T ss_pred eEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCC----------C-cCccCCCCcC
Confidence 3799999 477777 2347777541 2 3689998854
No 44
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=36.65 E-value=7.1 Score=40.62 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=23.9
Q ss_pred hhhcccCcc-----------ccccccccchhHHhhhhccC
Q 010750 4 VAACKIMKK-----------DKYCPIKFCHKCLLNRYGEK 32 (502)
Q Consensus 4 ~~sChqcr~-----------~~~C~~~fC~~CL~nRYge~ 32 (502)
+..|+.|.. |..|+..||..|=.|+|...
T Consensus 168 a~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~ 207 (288)
T KOG1729|consen 168 ATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLP 207 (288)
T ss_pred ceecccCCCccccHHHHHHHHHhcchHhhhhhhcCccccc
Confidence 467888885 57899999999999998533
No 45
>PF08524 rRNA_processing: rRNA processing; InterPro: IPR013730 This is a family of proteins that is are involved in rRNA processing []. In a localisation study they were found to localise to the nucleus and nucleolus []. The family also includes other metazoa members from plants to mammals where the protein has been named BR22 and is associated with TTF-1, thyroid transcription factor 1 []. In the lungs, the family binds TTF-1 to form a complex which influences the expression of the key lung surfactant protein-B (SP-B) and -C (SP-C), the small hydrophobic surfactant proteins that maintain surface tension in alveoli [].
Probab=36.65 E-value=2.2e+02 Score=26.86 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=37.8
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHHHHHHHHh---hcCCCCChhhhHhHHHHHHH
Q 010750 408 WIDDQNSEFVEKVKESREKFVAAKEKEKK---LKQKLQDEVAKAII---TNGAPLSISEHEAIVSEIKR 470 (502)
Q Consensus 408 ~Ide~~ee~~e~~~~aReka~aAk~Keke---~keklk~e~ak~~~---~nGa~l~~ee~~~~iS~ik~ 470 (502)
.+.+..+...+++.+.|++..+..+++.+ .+++-+-+.-+.+. .-|+|+-..-=+.||..|..
T Consensus 76 ~~~e~~~~~k~rk~~~r~e~~~~~~~k~e~~~~~~k~R~~~~k~l~kKTkkGQPvM~~rI~~LL~KIq~ 144 (148)
T PF08524_consen 76 KLKEKYEKKKERKEEEREEKEAQKQEKEEEIEKKKKERKERKKKLSKKTKKGQPVMKNRIEHLLEKIQK 144 (148)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHh
Confidence 44466666666666666666555443333 22232333444444 88999987777888888853
No 46
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=36.39 E-value=12 Score=34.15 Aligned_cols=13 Identities=46% Similarity=1.050 Sum_probs=11.0
Q ss_pred CcccCccccccCC
Q 010750 49 GICNCSLCMKKRG 61 (502)
Q Consensus 49 giCNCS~Crrk~G 61 (502)
.+|||+.|||+-|
T Consensus 25 ~~ChCs~Crk~~G 37 (133)
T COG3791 25 SACHCSDCRKASG 37 (133)
T ss_pred eeeCchHhhhhhC
Confidence 3899999999854
No 47
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=35.62 E-value=14 Score=26.11 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=8.8
Q ss_pred HHHHHHHHHHh
Q 010750 280 QFLEFCAAFGK 290 (502)
Q Consensus 280 mvlEFC~sFGk 290 (502)
--||||+.||.
T Consensus 18 y~WDF~~~fG~ 28 (28)
T PF08076_consen 18 YHWDFCSLFGF 28 (28)
T ss_pred eehhhhhhhcC
Confidence 35999999984
No 48
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.91 E-value=20 Score=39.58 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=23.0
Q ss_pred hhcccCc---cccccc----------cccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 5 AACKIMK---KDKYCP----------IKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 5 ~sChqcr---~~~~C~----------~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
..|+.|+ +|+.|. ...|+.|-+. ....|.||.|-+
T Consensus 214 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~----------~~~~~~Cp~C~s 261 (505)
T TIGR00595 214 LLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQ----------EPIPKTCPQCGS 261 (505)
T ss_pred eEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCc----------CCCCCCCCCCCC
Confidence 3699998 467776 2347777542 355788998844
No 49
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.75 E-value=18 Score=38.14 Aligned_cols=26 Identities=35% Similarity=0.686 Sum_probs=22.1
Q ss_pred hhcccCccc------cccccccchhHHhhhhc
Q 010750 5 AACKIMKKD------KYCPIKFCHKCLLNRYG 30 (502)
Q Consensus 5 ~sChqcr~~------~~C~~~fC~~CL~nRYg 30 (502)
--|++||+- ..|.+.||..|-..+|-
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q 273 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ 273 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccc
Confidence 359999952 67999999999999994
No 50
>PF04828 GFA: Glutathione-dependent formaldehyde-activating enzyme; InterPro: IPR006913 The GFA family consists mainly of glutathione-dependent formaldehyde-activating enzymes, but also includes centromere protein V and a fission yeast protein described as uncharacterised lyase. Glutathione-dependent formaldehyde-activating enzyme catalyse the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. All known members of this family contain 5 strongly conserved cysteine residues.; GO: 0016846 carbon-sulfur lyase activity, 0008152 metabolic process; PDB: 3FAC_B 1XA8_A 1X6M_B.
Probab=33.14 E-value=14 Score=29.85 Aligned_cols=12 Identities=50% Similarity=1.149 Sum_probs=9.9
Q ss_pred cccCccccccCC
Q 010750 50 ICNCSLCMKKRG 61 (502)
Q Consensus 50 iCNCS~Crrk~G 61 (502)
.|+|+.|||.-|
T Consensus 2 ~ChC~~Cr~~~g 13 (92)
T PF04828_consen 2 VCHCSDCRKWSG 13 (92)
T ss_dssp EE-STTCHHHTT
T ss_pred EeeChHHhcccC
Confidence 599999999988
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.50 E-value=25 Score=38.22 Aligned_cols=35 Identities=31% Similarity=0.733 Sum_probs=26.7
Q ss_pred hcccCcc------ccccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 6 ACKIMKK------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 6 sChqcr~------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
.|+.|.. ...|++.||..||.+ ..+..-.||.||.
T Consensus 86 ~c~vc~~~l~~pv~tpcghs~c~~Cl~r---------~ld~~~~cp~Cr~ 126 (398)
T KOG4159|consen 86 ECCVCSRALYPPVVTPCGHSFCLECLDR---------SLDQETECPLCRD 126 (398)
T ss_pred hhhhhHhhcCCCccccccccccHHHHHH---------HhccCCCCccccc
Confidence 4777763 468999999999775 2347778999776
No 52
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.64 E-value=2.8e+02 Score=25.28 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHHHHHHh---hcCCCCChhhhHhHHHHHH
Q 010750 420 VKESREKFVAAKEKEKKLKQKLQDEVAKAII---TNGAPLSISEHEAIVSEIK 469 (502)
Q Consensus 420 ~~~aReka~aAk~Keke~keklk~e~ak~~~---~nGa~l~~ee~~~~iS~ik 469 (502)
++..||+.++..+..-..-.+-+-++.+++. .-|+|.-...-.-|+.+|-
T Consensus 49 k~~Ere~~r~~R~e~~~aykKkr~e~~kal~KrtkKGQPnln~qM~~LL~~Iq 101 (106)
T KOG4819|consen 49 KAAEREKVRADRDEQVKAYKKKRLEKTKALSKRTKKGQPNLNDQMQLLLKQIQ 101 (106)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Confidence 4444444444432222223344556777777 7899998777777787775
No 55
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.59 E-value=18 Score=32.38 Aligned_cols=17 Identities=53% Similarity=0.972 Sum_probs=14.2
Q ss_pred cccchhHHhhhhccCHH
Q 010750 18 IKFCHKCLLNRYGEKAE 34 (502)
Q Consensus 18 ~~fC~~CL~nRYge~v~ 34 (502)
..||+.||.++|-+-.+
T Consensus 41 AgFCRNCLs~Wy~eaae 57 (104)
T COG3492 41 AGFCRNCLSNWYREAAE 57 (104)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47999999999976664
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=30.12 E-value=21 Score=38.46 Aligned_cols=11 Identities=45% Similarity=1.247 Sum_probs=7.6
Q ss_pred CCccCCCCCCc
Q 010750 40 DGWNCPRCRGI 50 (502)
Q Consensus 40 ~~W~CP~CRgi 50 (502)
--|+||.||.|
T Consensus 367 l~W~CPsC~~W 377 (389)
T COG2956 367 LYWHCPSCRAW 377 (389)
T ss_pred eeeeCCCcccc
Confidence 36777777765
No 57
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=29.98 E-value=30 Score=30.11 Aligned_cols=43 Identities=30% Similarity=0.737 Sum_probs=26.7
Q ss_pred CchhhhcccCc-ccccccc--ccch-----hHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 1 MDFVAACKIMK-KDKYCPI--KFCH-----KCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 1 ~df~~sChqcr-~~~~C~~--~fC~-----~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
|-|-+.|.+|+ ....|+. .||. -|+.+.-. .....-+||-||-
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~------~~tsq~~CPmcRq 78 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLN------TPTSQGQCPMCRQ 78 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhc------CccccccCCcchh
Confidence 56888999999 6677773 3444 34443221 1334468999984
No 58
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=29.76 E-value=28 Score=36.98 Aligned_cols=35 Identities=26% Similarity=0.765 Sum_probs=25.5
Q ss_pred hhcccCcc-------ccccccccchhHHhhhhccCHHHhhcCCCccCCCC
Q 010750 5 AACKIMKK-------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRC 47 (502)
Q Consensus 5 ~sChqcr~-------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~C 47 (502)
-.|.-|+. .+-|++.||.-||.+. +.+-++.||.|
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~a--------l~dsDf~CpnC 316 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTA--------LLDSDFKCPNC 316 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhh--------hhhccccCCCc
Confidence 35666652 1468999999999754 46778899976
No 59
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=29.21 E-value=5.8e+02 Score=25.49 Aligned_cols=20 Identities=5% Similarity=0.247 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHHHHHHh
Q 010750 404 VLRNWIDDQNSEFVEKVKES 423 (502)
Q Consensus 404 ~iR~~Ide~~ee~~e~~~~a 423 (502)
.+.+.|+++-+.....-.++
T Consensus 29 Pi~~~l~~R~~~I~~~l~~A 48 (246)
T TIGR03321 29 PILDAMDAREKKIAGELADA 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444333333
No 60
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.95 E-value=30 Score=37.90 Aligned_cols=42 Identities=26% Similarity=0.627 Sum_probs=29.6
Q ss_pred CchhhhcccCccc----------cccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 1 MDFVAACKIMKKD----------KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 1 ~df~~sChqcr~~----------~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
|-.+|.||+|-.. ..|++.|=-.||..+|...+.. -.||-|+
T Consensus 1 mpi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~------R~cpic~ 52 (465)
T KOG0827|consen 1 MPIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSN------RGCPICQ 52 (465)
T ss_pred CCccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCcc------CCCCcee
Confidence 4457899999642 4499999999999988433310 2577666
No 61
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=28.53 E-value=31 Score=36.80 Aligned_cols=25 Identities=28% Similarity=0.588 Sum_probs=19.9
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
-.|-+.||..|-. .+..-+||.|-+
T Consensus 107 IPCkHvFCl~CAr-----------~~~dK~Cp~C~d 131 (389)
T KOG2932|consen 107 IPCKHVFCLECAR-----------SDSDKICPLCDD 131 (389)
T ss_pred cccchhhhhhhhh-----------cCccccCcCccc
Confidence 4599999999964 344679999986
No 62
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=28.14 E-value=19 Score=39.87 Aligned_cols=32 Identities=25% Similarity=0.609 Sum_probs=24.2
Q ss_pred ccccccchhHHhhhhccCHHHhhcCCCccCCCCC
Q 010750 15 YCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCR 48 (502)
Q Consensus 15 ~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CR 48 (502)
.+..-||..|..-|-+..+. .+...|-||.|.
T Consensus 2 l~~L~fC~~C~~irc~~c~~--~Ei~~~yCp~CL 33 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCPRCVS--EEIDSYYCPNCL 33 (483)
T ss_pred cccceecccccccCChhhcc--cccceeECcccc
Confidence 45667888888888765553 367799999997
No 63
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=36 Score=34.27 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=22.5
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
-.|++.+|..|+..- +.+..|.||.||.
T Consensus 25 l~c~h~~c~~c~~~l--------~~~~~i~cpfcR~ 52 (296)
T KOG4185|consen 25 LKCGHTICQNCASKL--------LGNSRILCPFCRE 52 (296)
T ss_pred cccCceehHhHHHHH--------hcCceeeccCCCC
Confidence 449999999999843 4677888998887
No 64
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.08 E-value=15 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=16.3
Q ss_pred hhhcccCcc----------ccccccccchhHHhhhhccC
Q 010750 4 VAACKIMKK----------DKYCPIKFCHKCLLNRYGEK 32 (502)
Q Consensus 4 ~~sChqcr~----------~~~C~~~fC~~CL~nRYge~ 32 (502)
...|.+|.. +..|+..||..|..++.-..
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~ 47 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLP 47 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEccc
Confidence 456777774 57799999999998776443
No 65
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=25.44 E-value=3.8e+02 Score=25.61 Aligned_cols=27 Identities=7% Similarity=-0.140 Sum_probs=11.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 010750 404 VLRNWIDDQNSEFVEKVKESREKFVAA 430 (502)
Q Consensus 404 ~iR~~Ide~~ee~~e~~~~aReka~aA 430 (502)
..|..++....++++.-+++|.++...
T Consensus 49 ~~r~eA~~l~~e~e~~L~~Ar~EA~~I 75 (154)
T PRK06568 49 KLKEDAALLFEQTNAQIKKLETLRSQM 75 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 66
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=24.63 E-value=5.5e+02 Score=25.65 Aligned_cols=61 Identities=26% Similarity=0.335 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHH--HHh--hcCCCCChhhh-HhHHHHHHHHHHHHHHHHHhh
Q 010750 422 ESREKFVAAKEKEKKLKQKLQDEVAK--AII--TNGAPLSISEH-EAIVSEIKRKAAEAHSEMTEA 482 (502)
Q Consensus 422 ~aReka~aAk~Keke~keklk~e~ak--~~~--~nGa~l~~ee~-~~~iS~ik~~~~~~~a~~~ea 482 (502)
+.-|.+.+.++....++|++..-..| .++ -.|.+-+-.+- .-|-.+||+.-+|.+|..+|.
T Consensus 104 ~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (189)
T TIGR02132 104 AQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQIKTQGEQLQAQLLEK 169 (189)
T ss_pred HHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34456777777788888888765322 333 89999988544 445567899999999988874
No 67
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.45 E-value=6.3e+02 Score=24.19 Aligned_cols=19 Identities=0% Similarity=0.150 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 010750 404 VLRNWIDDQNSEFVEKVKE 422 (502)
Q Consensus 404 ~iR~~Ide~~ee~~e~~~~ 422 (502)
.+++.|+++-......-.+
T Consensus 55 PI~~~l~~R~~~I~~~l~~ 73 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAA 73 (181)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 4666666665554433333
No 68
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.43 E-value=2.3e+02 Score=31.43 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=15.1
Q ss_pred cccccCCCCccccccccccCCCCCc
Q 010750 251 ITEVPLPRSATLTTVAGAEIPPEDV 275 (502)
Q Consensus 251 ~~e~~LP~gt~lt~vag~~lP~E~v 275 (502)
.....+|.|-.+| |++-+.+-
T Consensus 201 v~~~v~P~~D~vt----~ev~l~d~ 221 (440)
T KOG2357|consen 201 VMNSVRPVGDQVT----FEVTLNDK 221 (440)
T ss_pred HHHhcccccceEE----EEEecCcc
Confidence 3346788888888 77777763
No 69
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=24.10 E-value=6.3e+02 Score=24.05 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=27.1
Q ss_pred ceeccCcc--hhhhHHHHHHHHhhhhHHHHHHHHHHhHHH
Q 010750 379 GYHQLNGS--KKLKLLNFLCDEALGTTVLRNWIDDQNSEF 416 (502)
Q Consensus 379 ~Y~~L~~s--~KLkILn~LCdeaLtT~~iR~~Ide~~ee~ 416 (502)
||..-+.. .+|..+..|=+-=++...|+..++......
T Consensus 36 gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~~~~~ 75 (172)
T cd04790 36 NYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQPGDDA 75 (172)
T ss_pred CCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChhH
Confidence 34444444 788888888777788889999998665433
No 70
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.22 E-value=24 Score=40.49 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=26.9
Q ss_pred hhcccCcc----------ccccccccchhHHhhhhccCHHHhhcCCCccCCCC
Q 010750 5 AACKIMKK----------DKYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRC 47 (502)
Q Consensus 5 ~sChqcr~----------~~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~C 47 (502)
.-||.|+. |..|+..||+.|...=- ..+.-..+.+.-+|-.|
T Consensus 166 ~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~-~lP~~Gi~~~VRVCd~C 217 (634)
T KOG1818|consen 166 EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSL-TLPKLGIEKPVRVCDSC 217 (634)
T ss_pred cccceeeeeeeeccccccccccchhhccCcccccc-Ccccccccccceehhhh
Confidence 36999984 57899999999998522 22222234455555555
No 71
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=23.08 E-value=35 Score=25.92 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=12.4
Q ss_pred ccccccchhHHhhhhc
Q 010750 15 YCPIKFCHKCLLNRYG 30 (502)
Q Consensus 15 ~C~~~fC~~CL~nRYg 30 (502)
.|++.||..||...-.
T Consensus 18 ~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 18 PCGHVFCKDCLQKLSK 33 (43)
T ss_dssp SSS-EEEHHHHHHHHH
T ss_pred eCccHHHHHHHHHHHh
Confidence 4999999999997553
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.27 E-value=44 Score=38.30 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=22.3
Q ss_pred hhcccCc---cccccccc----------cchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 5 AACKIMK---KDKYCPIK----------FCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 5 ~sChqcr---~~~~C~~~----------fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
..|..|+ .|+.|... .|+.|-+. ....|.||.|-+
T Consensus 382 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~----------~~~~~~Cp~Cg~ 429 (679)
T PRK05580 382 LLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQ----------EPIPKACPECGS 429 (679)
T ss_pred eEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCC----------CCCCCCCCCCcC
Confidence 4688888 46667622 36666532 355788998844
No 73
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=21.68 E-value=6.9e+02 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 010750 403 TVLRNWIDDQNSEFVEKVKESREKFVAAK 431 (502)
Q Consensus 403 ~~iR~~Ide~~ee~~e~~~~aReka~aAk 431 (502)
..+++.|+++-+...+.-.++.+.-..+.
T Consensus 45 kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~ 73 (167)
T PRK08475 45 KPLKNFYKSRINKISKRLEEIQEKLKESK 73 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665554444443333333333
No 74
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.64 E-value=4.2e+02 Score=29.69 Aligned_cols=77 Identities=23% Similarity=0.385 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH--HHHhhcCCCCChhhhHhHHHHHHH---HHHH--HHHHHHhhhcc-cccccccccC
Q 010750 424 REKFVAAKEKEKKLKQKLQDEVA--KAIITNGAPLSISEHEAIVSEIKR---KAAE--AHSEMTEAKGM-AFKSKLRISG 495 (502)
Q Consensus 424 Reka~aAk~Keke~keklk~e~a--k~~~~nGa~l~~ee~~~~iS~ik~---~~~~--~~a~~~ea~~~-~~k~~~~~~~ 495 (502)
++++..-..++.++++.++...- -|+.-.+.|++.++.+++|-++++ -..+ -|.+.+.+.|| -+.+-..+||
T Consensus 95 ~e~~~~~~~~~~~l~~el~~~~~~ipN~~hpsVpv~~ee~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~vsG 174 (455)
T KOG2509|consen 95 KEEAVELEEDESKLEDELYEVLLQIPNITHPSVPVSNEEQANVVQRVGGPLEFEFKLSHHDELVRALGFIDLERGAKVSG 174 (455)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCchhhhhHHHHhcCCcccccccccHHHHHHhcccccccchhhccc
Confidence 34444433455556655555533 233367888998999999988722 1222 46888899998 4555667788
Q ss_pred Ccccc
Q 010750 496 FSSFK 500 (502)
Q Consensus 496 ~~~~~ 500 (502)
-++|-
T Consensus 175 ~r~Yy 179 (455)
T KOG2509|consen 175 HRGYY 179 (455)
T ss_pred ccceE
Confidence 77763
No 75
>PTZ00396 Casein kinase II subunit beta; Provisional
Probab=21.61 E-value=28 Score=35.76 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=27.9
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCCCccc
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGICN 52 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgiCN 52 (502)
..|++.+|.++-.-=||..-.-=.....+-||+|+++=+
T Consensus 121 G~CPRv~C~~q~~LPvGlSd~~g~~~VKlyCP~C~DvY~ 159 (251)
T PTZ00396 121 GHCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYH 159 (251)
T ss_pred CCCCCccCCCCcccccccCCCcCcCceeEeCCCchhhcC
Confidence 679999999887667775432112456778999999754
No 76
>PRK04023 DNA polymerase II large subunit; Validated
Probab=21.52 E-value=53 Score=39.88 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.3
Q ss_pred cccccCCCCCchhHHHHHHHHHHH-HhhhcCCC
Q 010750 265 VAGAEIPPEDVGHALQFLEFCAAF-GKVLDLKK 296 (502)
Q Consensus 265 vag~~lP~E~vGdaLmvlEFC~sF-Gk~L~L~~ 296 (502)
|-|+-||.++.=-+|.|-.|..-. -+..+|.+
T Consensus 787 ~QDiil~~~aa~yll~va~fiDdLL~k~Ygl~~ 819 (1121)
T PRK04023 787 VQDVIISRDAAEYLLRVAKFIDDLLEKYYGLEP 819 (1121)
T ss_pred cccEEcchHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 557777777777777777776542 23344544
No 77
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.23 E-value=51 Score=35.26 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=27.2
Q ss_pred cccccccchhHHhhhhccCHHHhhcCCCccCCCCCC----cccCcc
Q 010750 14 KYCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG----ICNCSL 55 (502)
Q Consensus 14 ~~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg----iCNCS~ 55 (502)
+.|.+.||..|+.++---.-. .....-.||.||. .|+.++
T Consensus 185 pnC~H~~Cl~Cir~wr~~~q~--~~~~sksCP~CRv~s~~v~pS~~ 228 (344)
T KOG1039|consen 185 PNCNHSFCLNCIRKWRQATQF--ESKTSKSCPFCRVPSSFVNPSSF 228 (344)
T ss_pred CCcchhhhhcHhHhhhhhhcc--ccccccCCCcccCccccccccce
Confidence 569999999999875411111 2344668999997 566666
No 78
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=20.90 E-value=76 Score=25.06 Aligned_cols=27 Identities=30% Similarity=0.773 Sum_probs=13.7
Q ss_pred ccccccchhHHhhhhccCHHHhhcCCCccCCCCCC
Q 010750 15 YCPIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRG 49 (502)
Q Consensus 15 ~C~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRg 49 (502)
.|+-+.|..|..+ ++.+.+-.||.||.
T Consensus 19 ~Cgf~IC~~C~~~--------i~~~~~g~CPgCr~ 45 (48)
T PF14570_consen 19 ECGFQICRFCYHD--------ILENEGGRCPGCRE 45 (48)
T ss_dssp TTS----HHHHHH--------HTTSS-SB-TTT--
T ss_pred cCCCcHHHHHHHH--------HHhccCCCCCCCCC
Confidence 4778999999763 34466789999984
No 79
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.62 E-value=8.9e+02 Score=24.51 Aligned_cols=21 Identities=0% Similarity=0.173 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhH
Q 010750 404 VLRNWIDDQNSEFVEKVKESR 424 (502)
Q Consensus 404 ~iR~~Ide~~ee~~e~~~~aR 424 (502)
.+.+.|+++-......-.++.
T Consensus 29 Pi~~~l~eR~~~I~~~l~~Ae 49 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDAE 49 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444444333333
No 80
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.54 E-value=1.5e+02 Score=29.04 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=44.7
Q ss_pred hhhcccCcccccc-ccccchhHHhhhhccCHHHhhcCCCccCCCCCCc--c---cCccccccCCC-----------CCch
Q 010750 4 VAACKIMKKDKYC-PIKFCHKCLLNRYGEKAEDAALLDGWNCPRCRGI--C---NCSLCMKKRGH-----------QPTG 66 (502)
Q Consensus 4 ~~sChqcr~~~~C-~~~fC~~CL~nRYge~v~ev~~~~~W~CP~CRgi--C---NCS~Crrk~G~-----------~PTG 66 (502)
-..|-.|...-.= ....|..|...-. .. .+.||.|-.- . -|..|.+.... .|..
T Consensus 5 P~~C~~C~~~~~~~~~~lC~~C~~~l~--------~~-~~~C~~Cg~~~~~~~~~C~~C~~~~~~~~~~~a~~~Y~g~~r 75 (227)
T PRK11595 5 PGLCWLCRMPLALSHWGICSVCSRALR--------TL-KTCCPQCGLPATHPHLPCGRCLQKPPPWQRLVFVSDYAPPLS 75 (227)
T ss_pred CCcCccCCCccCCCCCcccHHHHhhCC--------cc-cCcCccCCCcCCCCCCCcHHHHcCCCchhheeeeeecccHHH
Confidence 3456666632100 1247999976421 11 3689999742 2 18888554321 2677
Q ss_pred HHHHHHHHhCchhHHHHHH
Q 010750 67 QLVQAAKATGFSSVSEMLL 85 (502)
Q Consensus 67 ~l~~~ak~~G~~SV~~yL~ 85 (502)
.+++..|..|-..++..|-
T Consensus 76 ~lI~~~Ky~~~~~l~~~l~ 94 (227)
T PRK11595 76 GLIHQLKFSRRSELASVLA 94 (227)
T ss_pred HHHHHHHHCccHHHHHHHH
Confidence 8899999999888776664
Done!