BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010751
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/463 (78%), Positives = 391/463 (84%), Gaps = 14/463 (3%)
Query: 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99
AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE TL PMKY+QIA
Sbjct: 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIA 60
Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQKASTLLSSRGNKAYXXXXXXXXXXXXXXXXXXXX 159
ELLNSIAERF+WEKVMEGD IIGLKQ ++ G +
Sbjct: 61 ELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQ--------FELSGAPLETLHQT 112
Query: 160 XXXXXXHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKV 219
H Y VKAVAEEMGIGFLG+GFQPKW +DIP MPKGRY+IMRNYMPKV
Sbjct: 113 CAEVNSHLY------QVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKV 166
Query: 220 GSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSM 279
GSLGLDMM RTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSM
Sbjct: 167 GSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSM 226
Query: 280 RSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLA 339
RSHIWTDTD +R GMLPFVFDDSFGFEQYVDYALDVPMYF YR KY+DC GM+FR FLA
Sbjct: 227 RSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLA 286
Query: 340 GKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDE 399
GKLPCLPGELPT NDWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWVGLLYDE
Sbjct: 287 GKLPCLPGELPTYNDWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDE 346
Query: 400 DSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFK 459
D LQ+VLD+TADWT ER+MLRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+K
Sbjct: 347 DVLQSVLDLTADWTPAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYK 406
Query: 460 ETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 502
E GFLN V EVVRTGVTPAE LL+MY+G+W +SVDPVF+ELLY
Sbjct: 407 EVGFLNAVTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY 449
>pdb|2GWC|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|B Chain B, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|C Chain C, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|D Chain D, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|E Chain E, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|F Chain F, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|G Chain G, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|H Chain H, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
Length = 449
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/463 (74%), Positives = 373/463 (80%), Gaps = 14/463 (3%)
Query: 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99
AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE TL P KY+QIA
Sbjct: 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPXKYDQIA 60
Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQKASTLLSSRGNKAYXXXXXXXXXXXXXXXXXXXX 159
ELLNSIAERF+WEKV EGD IIGLKQ ++ G +
Sbjct: 61 ELLNSIAERFEWEKVXEGDKIIGLKQGKQSISLEPGGQ--------FELSGAPLETLHQT 112
Query: 160 XXXXXXHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKV 219
H Y VKAVAEE GIGFLG GFQPKW +DIP PKGRY+I RNY PKV
Sbjct: 113 CAEVNSHLY------QVKAVAEEXGIGFLGXGFQPKWRREDIPTXPKGRYDIXRNYXPKV 166
Query: 220 GSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSM 279
GSLGLD RTCTVQVNLDFSSEAD IRKFRAGLALQPIATALFANSPFTEGKPNG+LS
Sbjct: 167 GSLGLDXXLRTCTVQVNLDFSSEADXIRKFRAGLALQPIATALFANSPFTEGKPNGFLSX 226
Query: 280 RSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLA 339
RSHIWTDTD +R G LPFVFDDSFGFEQYVDYALDVP YF YR KY+DC G +FR FLA
Sbjct: 227 RSHIWTDTDKDRTGXLPFVFDDSFGFEQYVDYALDVPXYFAYRNGKYVDCTGXTFRQFLA 286
Query: 340 GKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDE 399
GKLPCLPGELPT NDWENHLTTIFPEVRLKRY E RGADGGPWRRLCALPAFWVGLLYDE
Sbjct: 287 GKLPCLPGELPTYNDWENHLTTIFPEVRLKRYXEXRGADGGPWRRLCALPAFWVGLLYDE 346
Query: 400 DSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFK 459
D LQ+VLD+TADWT ER+ LRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+K
Sbjct: 347 DVLQSVLDLTADWTPAEREXLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYK 406
Query: 460 ETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 502
E GFLN V EVVRTGVTPAE LL+ Y+G+W +SVDPVF+ELLY
Sbjct: 407 EVGFLNAVTEVVRTGVTPAENLLEXYNGEWGQSVDPVFQELLY 449
>pdb|3G7R|A Chain A, Crystal Structure Of Sco4454, A Tetr-Family
Transcriptional Regulator From Streptomyces Coelicolor
pdb|3G7R|B Chain B, Crystal Structure Of Sco4454, A Tetr-Family
Transcriptional Regulator From Streptomyces Coelicolor
Length = 221
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 420 LRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE 469
+R +V +P DG +R VA+ ++ DG+ GF+ FLN VAE
Sbjct: 94 IRAQVTAARGSSPAADGQVRAVARSIV----DGIRSPGFRGCAFLNAVAE 139
>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
Yersinia Pestis
Length = 352
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 304 GFEQYVDYALDVPMYFVYRKKKYIDCAGMSFR---------DFLAGKLPCLPGELPTLND 354
G VD V + K++ D AG+ DFL K G L +
Sbjct: 91 GKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVY 150
Query: 355 WENHLTTIFPEVRLKRYLEMRGADGGPWRRL 385
+E+H PE+R +R+ E GA GG W L
Sbjct: 151 FESHFDRYRPEIR-QRWREQAGAGGGIWYDL 180
>pdb|1DAB|A Chain A, The Structure Of Bordetella Pertussis Virulence Factor
P.69 Pertactin
Length = 539
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 223 GLDMMFRTCTVQVNLDFSSEADMIRKFRA-------GLALQPIATALFANSPFTEG-KPN 274
G +++R V L + AD A G ++ P+ AL + + +T +
Sbjct: 337 GKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAV 396
Query: 275 GYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQ 307
LS+ + W TDN+ G L D S F+Q
Sbjct: 397 DSLSIDNATWVMTDNSNVGALRLASDGSVDFQQ 429
>pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
Length = 703
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 437 LLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE------VVRTGVTPAEKLLD 483
L + A L LS DGL RG+++ + + E V+R+G P LLD
Sbjct: 144 LHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLD 196
>pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
Length = 702
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 437 LLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE------VVRTGVTPAEKLLD 483
L + A L LS DGL RG+++ + + E V+R+G P LLD
Sbjct: 143 LHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLD 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,557,293
Number of Sequences: 62578
Number of extensions: 608973
Number of successful extensions: 1048
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 9
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)