Query 010751
Match_columns 502
No_of_seqs 195 out of 1115
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:29:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gwd_A Glutamate cysteine liga 100.0 2.4E-91 8.1E-96 744.4 34.5 448 40-502 1-449 (449)
2 1r8g_A Hypothetical protein YB 100.0 1.3E-62 4.6E-67 512.0 25.7 348 69-500 7-369 (372)
3 3ln6_A Glutathione biosynthesi 100.0 5.2E-31 1.8E-35 295.1 13.6 348 73-497 18-406 (750)
4 1va6_A Glutamate--cysteine lig 100.0 6.4E-30 2.2E-34 272.6 11.9 353 61-485 9-455 (518)
5 3ln7_A Glutathione biosynthesi 99.9 4.3E-27 1.5E-31 263.0 12.9 330 73-485 18-397 (757)
6 3nzt_A Glutamate--cysteine lig 99.9 1.6E-24 5.4E-29 230.3 14.3 348 63-485 19-455 (525)
7 3ig5_A Glutamate-cysteine liga 99.7 6.9E-16 2.4E-20 165.3 14.9 205 65-292 36-325 (692)
8 2d3a_A Glutamine synthetase; l 96.9 0.0033 1.1E-07 64.3 10.1 112 49-196 101-238 (356)
9 3fky_A Glutamine synthetase; b 96.7 0.019 6.7E-07 58.9 13.8 45 128-188 189-234 (370)
10 2ojw_A Glutamine synthetase; a 96.5 0.025 8.5E-07 58.4 13.4 109 49-195 127-260 (384)
11 4hpp_A Probable glutamine synt 96.0 0.042 1.4E-06 57.7 12.1 106 49-188 103-221 (443)
12 3qaj_A Glutamine synthetase; A 95.8 0.08 2.7E-06 55.6 13.0 106 49-187 103-229 (444)
13 1f52_A Glutamine synthetase; A 95.7 0.077 2.6E-06 56.1 12.5 91 128-265 208-314 (468)
14 3ng0_A Glutamine synthetase; G 95.3 0.12 4E-06 54.8 12.5 45 128-188 211-257 (473)
15 4acf_A Glutamine synthetase 1; 94.4 0.48 1.6E-05 50.2 14.2 45 128-188 223-269 (486)
16 3o6x_A Glutamine synthetase; t 92.8 0.27 9.1E-06 54.2 8.8 49 128-195 282-331 (729)
17 2j9i_A Glutamate-ammonia ligas 80.6 0.25 8.5E-06 51.5 -0.9 122 48-196 93-221 (421)
18 2bp3_S Platelet glycoprotein I 27.3 15 0.00051 22.0 0.3 15 358-372 8-22 (26)
No 1
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=100.00 E-value=2.4e-91 Score=744.39 Aligned_cols=448 Identities=82% Similarity=1.374 Sum_probs=411.6
Q ss_pred ecCCCCCCcccCCCCCCHHHHHHHHHcCCCCCCCCeeEEEeccccccCCCCCCCChhHHHHHHHHHhcccCcchhccccc
Q 010751 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDY 119 (502)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~k~~~~~~iGvE~E~~lvd~~t~~p~~~~~i~~lL~~l~~~~~~~~~~e~g~ 119 (502)
|||||++.++..+++.++++|++||++|||+++.++||+|+|+++||.+|+++++++.+.++|+.+.+.+||++.+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~~~~~~~~~~~lL~~l~~~~g~~~~~~~~~ 80 (449)
T 2gwd_A 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIAELLNSIAERFEWEKVMEGDK 80 (449)
T ss_dssp -------------CCCCHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTCCBCCHHHHHHHHHHHHHHHTCEEEEETTE
T ss_pred CCCCCCcccccCCCccCHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCCCCCChHHHHHHHHHHHHhhccCccccccc
Confidence 68999999999999999999999999999999999999999999999988999998666899999988889999999999
Q ss_pred cccccCCC-ceEEcCCCCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCCCCC
Q 010751 120 IIGLKQKA-STLLSSRGNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGL 198 (502)
Q Consensus 120 ~igl~~~~-~i~~E~~~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~~~~ 198 (502)
+|||+.++ +|++||++| ||+ ||+||.+++++++++. ..+. .++++++++|+.|+++|+||++.+
T Consensus 81 ~~~l~~~~~~i~~E~~~q--iEl----~t~p~~~~~e~~~~l~---~~~~------~~~~~a~~~g~~l~~~G~~P~~~~ 145 (449)
T 2gwd_A 81 IIGLKQGKQSISLEPGGQ--FEL----SGAPLETLHQTCAEVN---SHLY------QVKAVAEEMGIGFLGMGFQPKWRR 145 (449)
T ss_dssp EEEEEETTEEEEECTTCC--EEE----ECCCBSSHHHHHHHHH---HHHH------HHHHHHHHHTEEEECCSBCSSCCG
T ss_pred cccccCCCceEEecCCce--EEe----cCCCcCCHHHHHHHHH---HHHH------HHHHHHHHcCCceeeccCCCCCCc
Confidence 99999775 899999999 999 9999999999999998 5554 999999999999999999999998
Q ss_pred CCCCCCCchHHHHHHHhcccccchhhhhhcccceeEeecCCCCHHHHHHHHHHHHhhhHHHHHhhhCCCCCCCCCCCccc
Q 010751 199 KDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLS 278 (502)
Q Consensus 199 ~~~~i~pk~RY~~m~~~~~~~g~~g~~mm~~t~s~qVhld~~~~~d~i~~~n~~~~l~P~llALsANSPf~~G~~tg~~S 278 (502)
.+++++|++||+.|.++|++.|..|++||..+||+||||+++|++++++++|.+++++|+++|||||||||+|++|||+|
T Consensus 146 ~~~~~~~~~RY~~m~~~~~~~g~~g~~mm~~~~g~qVhl~~~~~~~~~~~~~~~~~~~P~llALsAnSPf~~G~~tg~~S 225 (449)
T 2gwd_A 146 EDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLS 225 (449)
T ss_dssp GGSCCCSCHHHHHHHHHGGGTCSSHHHHHHHBCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHCCBCEETTEECSCSB
T ss_pred cccCCCCchHHHHHHHHHHHhchhHHHHhhcceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcCCCcc
Confidence 88999999999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhcCCCCCCCCCCCccCCchhHHHHHHHHhhccceeeeecCeeeeCCCchHHHhhhCCCCCCCCCCCChhhhhhc
Q 010751 279 MRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENH 358 (502)
Q Consensus 279 ~R~~iw~~~~~~RtG~~P~~F~~~~~fe~yv~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rP~~~d~~~h 358 (502)
+|+.+|+++|++|+|++|+.|+++++|++|+++++++|||||+++|.+++..+.+|.||+.++++.+.|+.|+++||.+|
T Consensus 226 ~R~~~w~~~~~~r~G~~p~~f~~~~~~e~yv~~l~~~~~~~v~~~g~~~~~~~~~f~~~l~~~l~~~~~~~p~~~d~~~~ 305 (449)
T 2gwd_A 226 MRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYNDWENH 305 (449)
T ss_dssp HHHHHTTSSCGGGCSCCGGGGSTTCSHHHHHHHHHHSCEEEEEETTEEEEEEEECHHHHHTTCCTTSTTCCCCHHHHHHH
T ss_pred hHHHHHhhCCCCcCCCCCcccCCccCHHHHHHHHHcCCceEeecCCccccCCcchHHHhhhcccccccCCCCCHHHHHhh
Confidence 99999999998899988999999999999999999999999999999899899999999999998889999999999999
Q ss_pred cCCCCCCccccCeEeEecCCCCCHHHHhHHHHHHHHhccChhcccchhhcCccccHHHHHHHhhhhcccCCCCccCCccH
Q 010751 359 LTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLL 438 (502)
Q Consensus 359 lst~fp~vR~kg~IEiR~~Da~p~~~~~a~aAl~~gLl~~~~~~~~~~~~~~~~~~~~~~~lr~~aar~GL~~~~~~~~l 438 (502)
+||+|||||||+|||||++|+||..+++|++||++||+++...++..++..+.|..++.+.+|.+|+|+||++.+.+.++
T Consensus 306 ~st~~~~vRpk~~iE~R~~D~~p~~~~~a~aAl~~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~AaR~Gl~a~~~~~~~ 385 (449)
T 2gwd_A 306 LTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAEREMLRNKVPVTGLKTPFRDGLL 385 (449)
T ss_dssp HTTCCCSEEESSSEEEEEEECCCHHHHHHHHHHHHHHHSSHHHHHHHHHHTTTCCHHHHHHHHHHHHHHGGGSEETTEEH
T ss_pred hcccCcccCcCCceEeecCCCCCcHHHHHHHHHHHHHHhhHHhhhhhHhhcCCcCHHHHHHHHHHHHHhccCCccCCCcH
Confidence 99999999999999999999999999999999999999998777777777788888775555669999999999988999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHcCCChHHHHHHHHcCCchhhHHHHHHhhcC
Q 010751 439 RHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 502 (502)
Q Consensus 439 ~~~~~~LL~~a~~gL~~~G~~e~~~L~~l~~~~~~g~t~A~~q~~~~~~~~~~~v~~~~~e~~~ 502 (502)
++++.+||+.++++|+++|.++..+|+.|.+++++|+|+|+||++.|+++|.++|+.+++|++|
T Consensus 386 ~~~~~~ll~~a~~~L~~~g~~~~~~l~~l~~~~~~g~t~A~~~l~~~~~~~~~~v~~~~~~~~~ 449 (449)
T 2gwd_A 386 KHVAEDVLKLAKDGLERRGYKEVGFLNAVTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY 449 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCGGGGHHHHHHHHHTCCHHHHHHHHHHTTTTTCSTTHHHHTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHhccccCcHHHHHHHhcC
Confidence 9999999999999999999777779999999999999999999999999999999999999987
No 2
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=100.00 E-value=1.3e-62 Score=511.96 Aligned_cols=348 Identities=14% Similarity=0.093 Sum_probs=287.5
Q ss_pred CCCCCCeeEEEeccccccCCCCCCCChhHHHHHHHHHhcccCcchhccccccccccCCCceEEcC-CCCeeEEEeeccCc
Q 010751 69 KPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQKASTLLSS-RGNKAYHLNLAVSL 147 (502)
Q Consensus 69 k~~~~~~iGvE~E~~lvd~~t~~p~~~~~i~~lL~~l~~~~~~~~~~e~g~~igl~~~~~i~~E~-~~q~niEl~~~~s~ 147 (502)
++++.+++|||+|+++||.+|+++++++ .++|+.+.+.+ .+..|+.|+ ++| ||+ +|
T Consensus 7 ~~~~~~~~GiE~E~~~Vd~~~g~~~~~~--~~~l~~~~~~~---------------~~~~it~E~~~~q--lEl----~t 63 (372)
T 1r8g_A 7 HVSEPFTLGIELEMQVVNPPGYDLSQDS--SMLIDAVKNKI---------------TAGEVKHDITESM--LEL----AT 63 (372)
T ss_dssp CCCCTTCEEEEEEEEEEETTTTEECSCC--HHHHTTTSSSC---------------SSSEEEECSSSSE--EEE----EC
T ss_pred CCCCCCceEEEEEEeeECCCCCCcCccH--HHHHHhchhcc---------------cCCcccchhhccE--EEe----cC
Confidence 3578899999999999999889999887 57886554321 023799999 899 999 99
Q ss_pred chhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCCCCCCCCCCCCchHHHHHHHhcccccchhhhhh
Q 010751 148 SLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMM 227 (502)
Q Consensus 148 ~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~~~~~~~~i~pk~RY~~m~~~~~~~g~~g~~mm 227 (502)
+||.++.+++++|. ..+ +.+.++++++|+.|++.|+||+..+.+.+++||+||+.|.++|+ ..++.||
T Consensus 64 ~p~~~~~e~~~~L~---~~~------~~~~~~a~~~g~~l~~~g~~P~~~~~~~~i~~~~rY~~l~~~~g---~~~~~~~ 131 (372)
T 1r8g_A 64 DVCRDINQAAGQFS---AMQ------KVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFG---YLIQQAT 131 (372)
T ss_dssp CSBSSHHHHHHHHH---HHH------HHHHHHHHHTTCEEECCSBCSSCCC----------------CCG---GGGCSCC
T ss_pred CCCCCHHHHHHHHH---HHH------HHHHHHHHHCCCEEEecCCCCCCCCccCCCCCchHHHHHHHHHH---HHHHhhc
Confidence 99999999999998 444 59999999999999999999999888899999999999999994 4577788
Q ss_pred cccceeEeecCCCCHHHHHHHHHHHHhhhHHHHHhhhCCCCCCCCCCCcccccHHHHhcCCCCCCCCCCCccCCchhHHH
Q 010751 228 FRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQ 307 (502)
Q Consensus 228 ~~t~s~qVhld~~~~~d~i~~~n~~~~l~P~llALsANSPf~~G~~tg~~S~R~~iw~~~~~~RtG~~P~~F~~~~~fe~ 307 (502)
+||+||||+++|++++++++|.++.++|+++|||||||||+|++|||+|+|+.+|+++| |+|+ |+.|.++++|++
T Consensus 132 --i~g~hvhv~~~~~~~~~~~~~~~~~~~p~l~aL~anSPf~~G~~tg~~s~R~~~~~~~p--~~g~-~~~f~~~~~y~~ 206 (372)
T 1r8g_A 132 --VFGQHVHVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFP--DNGP-MPWVSNWQQFEA 206 (372)
T ss_dssp --BCEEEEEEECSSHHHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTST--TCSS-CCCCSSHHHHHH
T ss_pred --eeeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCcHHHHHHHHHcCC--ccCC-CcccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 8885 668999999999
Q ss_pred HHHHHhhccceeeeecCeeeeCCCchHHHhhhCCCCCCCCCCCChhhhhhccCCCCCCcccc---CeEeEecCCCCC-HH
Q 010751 308 YVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLK---RYLEMRGADGGP-WR 383 (502)
Q Consensus 308 yv~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rP~~~d~~~hlst~fp~vR~k---g~IEiR~~Da~p-~~ 383 (502)
|+++++++ | .+ .|.+++|++|||| +|||||++|++| .+
T Consensus 207 ~~~~~l~~--------g-~~-----------------------------~~~~~~y~~vRpk~~~~~IE~R~~D~~p~~~ 248 (372)
T 1r8g_A 207 LFRCLSYT--------T-MI-----------------------------DSIKDLHWDIRPSPHFGTVEVRVMDTPLTLS 248 (372)
T ss_dssp HHHHHTTS--------S-SC-----------------------------SSGGGCCCSEEEETTTTEEEEEEEECCSSHH
T ss_pred HHHHHHHC--------C-Cc-----------------------------CcCCeeccccccCCCCCceEEeccCCCCCHH
Confidence 99999987 3 11 3678999999999 599999999999 79
Q ss_pred HHhHHHHHHHHhccChhc-ccchhhcCccccHHHHHHHhhhhcccCCCCccC------CccHHHHHHHHHHHHHHHHHhc
Q 010751 384 RLCALPAFWVGLLYDEDS-LQNVLDMTADWTTGERQMLRNKVPKTGLKTPFR------DGLLRHVAQDVLKLSKDGLERR 456 (502)
Q Consensus 384 ~~~a~aAl~~gLl~~~~~-~~~~~~~~~~~~~~~~~~lr~~aar~GL~~~~~------~~~l~~~~~~LL~~a~~gL~~~ 456 (502)
+.++++||++||+++... ..........+...+|+| +|+|+|+++.+. ..++++++.+||+.++++|+++
T Consensus 249 ~~~a~aa~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~---~aar~Gl~~~l~~~~~~~~~~~~~~~~~ll~~~~~~l~~~ 325 (372)
T 1r8g_A 249 HAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRF---QACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKI 325 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCCGGGGTTHHHHHH---HHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH---HHHHhCCCCccccCCCCcEeeHHHHHHHHHHHHHHHHHHc
Confidence 999999999999987521 122233344566778888 899999998663 2489999999999999999999
Q ss_pred CCchhhhHHHHHHHHHcCCChHHHHHHHHc---CCchhhHHHHHHhh
Q 010751 457 GFKETGFLNEVAEVVRTGVTPAEKLLDMYH---GKWRESVDPVFEEL 500 (502)
Q Consensus 457 G~~e~~~L~~l~~~~~~g~t~A~~q~~~~~---~~~~~~v~~~~~e~ 500 (502)
|+.+ +++.|.+++++| |+|+||++.|+ +++.+||+.+++++
T Consensus 326 g~~~--~l~~l~~~~~~g-~~a~~q~~~~~~~~~~l~~v~~~~~~~~ 369 (372)
T 1r8g_A 326 GASS--AIEALHRQVVSG-LNEAQLMRDFVADGGSLIGLVKKHCEIW 369 (372)
T ss_dssp TCHH--HHHHHHHHHHHC-CCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHH--HHHHHHHHHHcC-ChHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 9654 689999999999 99999999994 35999999999886
No 3
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.97 E-value=5.2e-31 Score=295.12 Aligned_cols=348 Identities=13% Similarity=0.052 Sum_probs=238.0
Q ss_pred CCeeEEEeccccccCCCCCCCChhHHHHHHHHHhcccCcchhccccccccccCCCceEEcC-CCCeeEEEeeccCcchhh
Q 010751 73 KWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQKASTLLSS-RGNKAYHLNLAVSLSLVV 151 (502)
Q Consensus 73 ~~~iGvE~E~~lvd~~t~~p~~~~~i~~lL~~l~~~~~~~~~~e~g~~igl~~~~~i~~E~-~~q~niEl~~~~s~~p~~ 151 (502)
.+++|||.|+++||+.|++.++..- .++|.. . .....|+.|+ .+| +|+ .|+||.
T Consensus 18 ~~~~GiE~E~lrvd~~~g~la~~~~-p~~lg~---~---------------~~~~~i~~d~~es~--lE~----~Tpv~~ 72 (750)
T 3ln6_A 18 QATFGLERESLRIHQPTQRVAQTPH-PKTLGS---R---------------NYHPYIQTDYSEPQ--LEL----ITPIAK 72 (750)
T ss_dssp CEEEEEEEEEEEEETTTTEECCCCC-CSSSCC---T---------------TTCSSEEESSBSSE--EEE----ECCCBS
T ss_pred cCCceEEEEeeEecCCcCCcCCCcc-hHHhcC---c---------------ccCCCccchhhhhh--eee----eCcCCC
Confidence 5799999999999997776443210 122211 0 0112799999 899 999 999999
Q ss_pred cHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCCCCCCCCCCC-----CchHHHH-HHHhcccccchhhh
Q 010751 152 HLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGLKDIPVM-----PKGRYEI-MRNYMPKVGSLGLD 225 (502)
Q Consensus 152 ~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~~~~~~~~i~-----pk~RY~~-m~~~~~~~g~~g~~ 225 (502)
++.++.++|. .++ +.+.+.++ .|..|.+.|++|+....++++. +++||+. |.+.| | ++.
T Consensus 73 ~~~~~~~~L~----~l~-----~~~~~~~~-~~e~lw~~smp~~l~~~~i~ia~~~~~~~~~Yr~~l~~ry---g--~~~ 137 (750)
T 3ln6_A 73 DSQEAIRFLK----AIS-----DVAGRSIN-HDEYLWPLSMPPKVREEDIQIAQLEDAFEYDYRKYLEKTY---G--KLI 137 (750)
T ss_dssp SHHHHHHHHH----HHH-----HHHHHHSC-TTEEECCSSSCSSCCTTTCCBCCCSCHHHHHHHHHHHHHH---C--TGG
T ss_pred CHHHHHHHHH----HHH-----HHHHHHhc-CCCceeeecCCCCCCCCCCCcccCCCCCcHHHHHHHHHHh---C--hhh
Confidence 9988888887 454 56666654 6889999999998766677777 6999997 77877 3 445
Q ss_pred hhcccceeEeecCCCCHHH-------------------HHHHHHHHHhhhHHHHHhhhCCCCC-----CCCCCCc-cccc
Q 010751 226 MMFRTCTVQVNLDFSSEAD-------------------MIRKFRAGLALQPIATALFANSPFT-----EGKPNGY-LSMR 280 (502)
Q Consensus 226 mm~~t~s~qVhld~~~~~d-------------------~i~~~n~~~~l~P~llALsANSPf~-----~G~~tg~-~S~R 280 (502)
++ +||+|||+++++... .++.+|..++|.|+++|||+||||| .|++|++ .|+|
T Consensus 138 q~--i~G~Hvn~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~l~r~~~r~~w~l~~L~gaSP~~~~~f~~g~~~~~~~S~R 215 (750)
T 3ln6_A 138 QS--ISGIHYNLGLGQELLTSLFELSQADNAIDFQNQLYMKLSQNFLRYRWLLTYLYGASPVAEEDFLDQKLNNPVRSLR 215 (750)
T ss_dssp GG--CCCEEEEEEECHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSCSSCTTTCCCSBST
T ss_pred ce--eeeEEEEecCChHHHHHHhhccccchHHHHhhhHHHHHHHHHHhHHHHHHHHhhCCccccccccCCCCCCceeeee
Confidence 56 999999999998642 2356788889999999999999999 7788885 7999
Q ss_pred HHHHhcCCCCCCCCCCCccCCchhHHHHHHHHhhccceeeeecCeeeeCCCchHHHhhhCCCCCCCCCCCChhhhhhccC
Q 010751 281 SHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLT 360 (502)
Q Consensus 281 ~~iw~~~~~~RtG~~P~~F~~~~~fe~yv~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rP~~~d~~~hls 360 (502)
+..|..++ ++| +|..|.++.+|.++++.++++ | .+...+..||++ ||+ .+.+
T Consensus 216 ~s~~g~~~--~~~-~~~~~~s~~~Y~~~l~~~v~~--------g-~l~~~~e~y~~i-----------Rpk-----~~~p 267 (750)
T 3ln6_A 216 NSHLGYVN--HKD-IRISYTSLKDYVNDLENAVKS--------G-QLIAEKEFYSPV-----------RLR-----GSKA 267 (750)
T ss_dssp TSSSSSCC--CTT-CCCCCSSHHHHHHHHHHCCTT--------T-C--CGGGCCCSE-----------EEE-----SCSS
T ss_pred ccccCCCC--CCC-CCCCcCCHHHHHHHHHHHHHC--------C-CcccCCceeEee-----------cCC-----CCCC
Confidence 99999998 566 688899988888888887776 4 577777788887 554 1111
Q ss_pred CCCCCccccCeEeEecCCCCC-HHHHhH--HHHHHHHhccChhcccchhhcCccc--cHHHHHHHhhhhcccCCCCccCC
Q 010751 361 TIFPEVRLKRYLEMRGADGGP-WRRLCA--LPAFWVGLLYDEDSLQNVLDMTADW--TTGERQMLRNKVPKTGLKTPFRD 435 (502)
Q Consensus 361 t~fp~vR~kg~IEiR~~Da~p-~~~~~a--~aAl~~gLl~~~~~~~~~~~~~~~~--~~~~~~~lr~~aar~GL~~~~~~ 435 (502)
|.--.-|--+|||+|+||.+| ....+. .+.|+..++......... .....+ ...+|++ +|+++| +...
T Consensus 268 ~~~l~~~Gi~yiE~R~~D~~p~~~~GI~~~~~~fl~~fll~~l~~~~~-~~~~~e~~~~~~n~~---~va~~g---p~~~ 340 (750)
T 3ln6_A 268 CRNYLEKGITYLEFRTFDLNPFSPIGITQETVDTVHLFLLALLWIDSS-SHIDQDIKEANRLND---LIALSH---PLEK 340 (750)
T ss_dssp TTTTTTTCCCEEEECCCCCCTTSTTSCCHHHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHH---HHHHSC---TTSC
T ss_pred chhHhhCCCCeEEEEeecCCCCCcccccHHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHH---HHHHhC---CCCe
Confidence 100001222589999999998 332222 234444433211111110 011111 2345555 799999 2234
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCchh--hhHHHHHHHHH-cCCChHHHHHHHHc-CCchhhHHHHH
Q 010751 436 GLLRHVAQDVLKLSKDGLERRGFKET--GFLNEVAEVVR-TGVTPAEKLLDMYH-GKWRESVDPVF 497 (502)
Q Consensus 436 ~~l~~~~~~LL~~a~~gL~~~G~~e~--~~L~~l~~~~~-~g~t~A~~q~~~~~-~~~~~~v~~~~ 497 (502)
.++++++.++++...+-++.+|...+ ..++.+.+.+. ...|++.+.++..+ +++.+....+.
T Consensus 341 ~~~~~~~~~ll~~l~~~a~~l~~~~~y~~~l~~~~~~~~~p~~t~s~~~~~~~~~~~~~~~~~~~a 406 (750)
T 3ln6_A 341 LPNQAPVSDLVDAMQSVIQHFNLSPYYQDLLESVKRQIQSPELTVAGQLLEMIEGLSLETFGQRQG 406 (750)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSGGGSHHHHHHHHCBTTBCHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCcccCHHHHHHHHHHhcCHHHHHHHHH
Confidence 57888999999999988888887543 34666666665 33689988887764 45555444443
No 4
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=99.96 E-value=6.4e-30 Score=272.62 Aligned_cols=353 Identities=15% Similarity=0.115 Sum_probs=235.9
Q ss_pred HHHHHcCCCCCCCCeeEEEeccccccCCCCCCC--ChhHHHHHHHHHhcccCcchhccccccccccCCCceEEcC-CCCe
Q 010751 61 VGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPM--KYEQIAELLNSIAERFDWEKVMEGDYIIGLKQKASTLLSS-RGNK 137 (502)
Q Consensus 61 ~~~~~~g~k~~~~~~iGvE~E~~lvd~~t~~p~--~~~~i~~lL~~l~~~~~~~~~~e~g~~igl~~~~~i~~E~-~~q~ 137 (502)
..++.+.-..=...++|||.|.+.||++ |... |.. ..|. .. ..+..|+.|+ .+|
T Consensus 9 l~~l~~~~~~l~~~~~GIE~E~lrVd~~-G~La~tphP---~~lg---s~---------------lt~~~IttDfsEsq- 65 (518)
T 1va6_A 9 LAWLEKHPQALKGIQRGLERETLRVNAD-GTLATTGHP---EALG---SA---------------LTHKWITTDFAEAL- 65 (518)
T ss_dssp HHHHHHSGGGGTTCEEEEEEEEEEECTT-SCBCCSCSC---GGGC---CT---------------TTCSSEEECSBTTE-
T ss_pred HHHhhcCHHHHhcCCcceEeeeeEECCC-CCCCCCCCh---HHHh---cc---------------ccCCCcCCCcchhh-
Confidence 4455544332346799999999999986 7642 222 1121 11 0012799999 899
Q ss_pred eEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCCCCCC-CCCC---------CCch
Q 010751 138 AYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGLK-DIPV---------MPKG 207 (502)
Q Consensus 138 niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~~~~~-~~~i---------~pk~ 207 (502)
||+ .|+||.++.++.++|. .+. +.+...+ .|..|.+.++.|..+.. ++|+ ..|.
T Consensus 66 -lE~----iTpv~~s~~eal~~L~----~l~-----~~v~~~l--~~e~Lwp~SmP~~l~~~~~IpiA~yg~s~~g~~k~ 129 (518)
T 1va6_A 66 -LEF----ITPVDGDIEHMLTFMR----DLH-----RYTARNM--GDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKT 129 (518)
T ss_dssp -EEE----ECCCBSCHHHHHHHHH----HHH-----HHHHTSS--TTCEECCSSSCSSCCTTCCCCBCCCCSSHHHHHHH
T ss_pred -eee----cCCCCCCHHHHHHHHH----HHH-----HHHHHHc--CCCeEeecCCCCCCCCCCCCccccccccccCccch
Confidence 999 9999999988888887 444 5666666 49999997776664322 2333 4679
Q ss_pred HHH-HHHHhcccccchhhhhhcccceeEeecCCCCH-------------------HHHHHHHHHHHhhhHHHHHhhhCCC
Q 010751 208 RYE-IMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSE-------------------ADMIRKFRAGLALQPIATALFANSP 267 (502)
Q Consensus 208 RY~-~m~~~~~~~g~~g~~mm~~t~s~qVhld~~~~-------------------~d~i~~~n~~~~l~P~llALsANSP 267 (502)
||+ .|.+.+ | +..++ +||+|||+++++. +..++.+|..+.+.|++++||+|||
T Consensus 130 ~Yr~~L~~rY---G--~~~q~--IsGiH~N~s~~d~l~~~l~~~~~~~~~~~~~~~~y~~lirn~~r~~wlL~yLfgASP 202 (518)
T 1va6_A 130 LYREGLKNRY---G--ALMQT--ISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASP 202 (518)
T ss_dssp HHHHHHHHHH---C--HHHHT--CCEEEEEEECCHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCCBS
T ss_pred HHHHHHHHHh---C--cchhe--eeeEEEEEecCHHHHHHHHhhccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999 588887 3 34455 9999999999987 3677788899999999999999999
Q ss_pred -----CCCCCCCCcc---------------cccHHHHhcCCCCCCCCCCCccCCchhHHHHHHHHhhccc-----eeeee
Q 010751 268 -----FTEGKPNGYL---------------SMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPM-----YFVYR 322 (502)
Q Consensus 268 -----f~~G~~tg~~---------------S~R~~iw~~~~~~RtG~~P~~F~~~~~fe~yv~~ll~~p~-----~~v~r 322 (502)
||.|++||+. |+|...|......++| +|..|.++.+|.++++.++++|- |=+.+
T Consensus 203 ~~~~sF~~g~~t~l~~~~~~~~t~y~p~atSlR~s~~Gy~n~~q~~-l~~~y~sl~~Y~~~l~~~i~tp~~~y~~ig~~~ 281 (518)
T 1va6_A 203 AISSSFLQGKPTSLPFEKTESGMYYLPYATSLRLSDLGYTNKSQSN-LGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEK 281 (518)
T ss_dssp EECGGGC----CCSCCEECTTSCEECTTCSBGGGSTTSSCCGGGTT-SCCCSSCHHHHHHHHHHHHTCBCHHHHTTCSEE
T ss_pred cccccccCCCCCCccccccccccccCCCcccccccccCCCCCccCC-CCCCcCCHHHHHHHHHHHHhCccchhhhhcccc
Confidence 8999999884 9999988544322567 67789999999999999998642 11223
Q ss_pred cCeeeeCCCchHHHhhhCCCCCCCCCCCChhhhhhccCCCCCCcccc------------------CeEeEecCCCCC-HH
Q 010751 323 KKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLK------------------RYLEMRGADGGP-WR 383 (502)
Q Consensus 323 ~g~~i~~~~~~~~d~~~~~~~~~~g~rP~~~d~~~hlst~fp~vR~k------------------g~IEiR~~Da~p-~~ 383 (502)
+|.++. +=.+.+ ..-+.+|.+|||| +|||||++|.+| ..
T Consensus 282 ~g~~~Q--------lntg~L--------------q~e~E~Y~~IRpk~~~~~ge~~~~aL~~~Gi~yIEvR~~DvnPf~~ 339 (518)
T 1va6_A 282 DGKRLQ--------INSNVL--------------QIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSP 339 (518)
T ss_dssp TTEECC--------SCSBSC--------------SSGGGCCCSEEEECCCCTTCCHHHHHHHHCCCEEEEEEEECCTTST
T ss_pred ccchhc--------cccccc--------------cccCeeeeccccCCCCCCCcCcHHHHHhCCCCeEEEEeccCCCCcc
Confidence 332111 000000 1223456666665 369999999999 44
Q ss_pred --HHhHHHHHHHHhccChhcccc-hhhcCccccHHHHHHHhhhhcccCCCCccC------C--ccHHHHHHHHHHHHHHH
Q 010751 384 --RLCALPAFWVGLLYDEDSLQN-VLDMTADWTTGERQMLRNKVPKTGLKTPFR------D--GLLRHVAQDVLKLSKDG 452 (502)
Q Consensus 384 --~~~a~aAl~~gLl~~~~~~~~-~~~~~~~~~~~~~~~lr~~aar~GL~~~~~------~--~~l~~~~~~LL~~a~~g 452 (502)
.....++|+..++......+. .......+...+|.| +|+++|++..+. . .++++++.+|++...+-
T Consensus 340 ~Gi~~~~~~fl~~fl~~~ll~~~~~~~~~~~~~~~~N~~---~va~~G~~~~l~l~~~~~~~~~~~~~~~~~ll~~l~~~ 416 (518)
T 1va6_A 340 IGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWN---RVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRV 416 (518)
T ss_dssp TSCCHHHHHHHHHHHHHHHHSCCCCCCHHHHHHTHHHHH---HHHHHTTCTTCEECSTTSCCCEEHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhCCCcCCChHHHHHHHHHHH---HHHHhCCCccccccCCCCcCcccHHHHHHHHHHHHHHH
Confidence 677788998887644321111 111112234566777 899999986441 2 47999999999999998
Q ss_pred HHhcCCc--hhhhHHHHH---HHHH-cCCChHHHHHHHH
Q 010751 453 LERRGFK--ETGFLNEVA---EVVR-TGVTPAEKLLDMY 485 (502)
Q Consensus 453 L~~~G~~--e~~~L~~l~---~~~~-~g~t~A~~q~~~~ 485 (502)
++.+|+. ...|...+. +.+. ...|++.+.++..
T Consensus 417 A~~L~~~~~~~~y~~~l~~~~~~~~~P~lT~sarll~~~ 455 (518)
T 1va6_A 417 AQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSM 455 (518)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTTTTCGGGSHHHHHHHHH
T ss_pred HHHhCCCcCChHHHHHHHHHHHHhcCcccCHHHHHHHHH
Confidence 8887752 112434333 3333 3368888877765
No 5
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.94 E-value=4.3e-27 Score=263.04 Aligned_cols=330 Identities=14% Similarity=0.056 Sum_probs=216.2
Q ss_pred CCeeEEEeccccccCCCCCCCChhHHHHHHHHHhcccCcchhccccccccccCCCceEEcC-CCCeeEEEeeccCcchhh
Q 010751 73 KWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQKASTLLSS-RGNKAYHLNLAVSLSLVV 151 (502)
Q Consensus 73 ~~~iGvE~E~~lvd~~t~~p~~~~~i~~lL~~l~~~~~~~~~~e~g~~igl~~~~~i~~E~-~~q~niEl~~~~s~~p~~ 151 (502)
.+++|||.|++.||+ ++......- .+.|.. . .....|+.|+ .+| +|+ .|+||.
T Consensus 18 ~~~~GiE~E~lrVd~-~g~la~~~h-p~~lg~---~---------------~~~~~i~td~ses~--lE~----iTpv~~ 71 (757)
T 3ln7_A 18 QGSFGLEKESQRVTA-DGAIVTTPH-PAVFGN---R---------------RYHPYIQTDFAESQ--LEL----ITPPTK 71 (757)
T ss_dssp CEEEEEEEEEECEET-TSBBCCSCC-CSSSCC---T---------------TTCSSEECSSSTTE--EEE----EEEEES
T ss_pred cCCceEEeEeeEECC-CCCcCCCcC-hHHhcC---c---------------ccCCCCCchhhhhh--eee----eCcCCC
Confidence 469999999999998 566433210 112211 0 0112799999 899 999 999999
Q ss_pred cHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCCCCC-CCCCCC-----CchHHHH-HHHhcccccchhh
Q 010751 152 HLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGL-KDIPVM-----PKGRYEI-MRNYMPKVGSLGL 224 (502)
Q Consensus 152 ~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~~~~-~~~~i~-----pk~RY~~-m~~~~~~~g~~g~ 224 (502)
++.++.++|. .++ +.+.+.+. .|..|.+.|++|.... .++|+. +|+||+. |.+.| | ++
T Consensus 72 ~~~~~~~~L~----~l~-----~~~~~~~~-~~e~lwp~smp~~l~~~~~ip~a~~~~~~~~~Yr~~L~~ry---G--~~ 136 (757)
T 3ln7_A 72 KLEDTFRWLS----VIH-----EVVQRSLP-EEEYIFPLSMPAGLPAEEQIRVAQLDNPEDVAYREYLVKIY---G--KN 136 (757)
T ss_dssp SHHHHHHHHH----HHH-----HHHHHHSC-TTEECCCSSSCSBCCC---CCCCCCSSHHHHHHHHHHHHHH---C--SH
T ss_pred CHHHHHHHHH----HHH-----HHHHHHhc-CCCceeeccCCCcCCCCCCCCccccCCCccHHHHHHHHHHh---c--hh
Confidence 9988888887 444 45555543 4667777777664322 233333 6899996 88877 3 34
Q ss_pred hhhcccceeEeecCCCCHH---------------H-----HHHHHHHHHhhhHHHHHhhhCCCCC-----CCC----CCC
Q 010751 225 DMMFRTCTVQVNLDFSSEA---------------D-----MIRKFRAGLALQPIATALFANSPFT-----EGK----PNG 275 (502)
Q Consensus 225 ~mm~~t~s~qVhld~~~~~---------------d-----~i~~~n~~~~l~P~llALsANSPf~-----~G~----~tg 275 (502)
.++ +||+|||+++++.. + .++..|..+.|.|++++||+||||| .|+ +++
T Consensus 137 ~q~--i~GiH~n~s~~~~~~~~l~~~~~~~~~~~~~~~~~Y~~l~r~~~r~~wll~yL~gaSP~~~~~f~~g~~~~~~~~ 214 (757)
T 3ln7_A 137 KQM--VSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNFLRYQWILLYLLAATPTVESAYFKDGSPLAKGQ 214 (757)
T ss_dssp HHH--CCCCEEEEEECHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC----CTTTCSSCCSSC
T ss_pred hce--eeeEEEEEecChHHHHHHhhhcccchhHHHHHhHHHHHHHHhhHhHHHHHHHHhhCCcccccccccCCCCCCCCC
Confidence 556 89999999999742 1 1335677778999999999999999 552 234
Q ss_pred cc-cccHHHHhcCCCCCCCCCCCccCCchhHHHHHHHHhhccceeeeecCeeeeCCCchHHHhhhCCCCCCCCCCCChhh
Q 010751 276 YL-SMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLND 354 (502)
Q Consensus 276 ~~-S~R~~iw~~~~~~RtG~~P~~F~~~~~fe~yv~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rP~~~d 354 (502)
+. |+|...|..++ ++| +|..|.++.+|.++++.++++ | .+...+..||++ ||+.
T Consensus 215 ~~~S~R~s~~gy~~--~~~-~~~~~~s~~~Y~~~l~~~v~~--------g-~l~~~~e~y~~i-----------Rpk~-- 269 (757)
T 3ln7_A 215 FVRSLRSSQYGYVN--DPE-INVSFDSVEKYVESLEHWVST--------G-KLIAEKEFYSNV-----------RLRG-- 269 (757)
T ss_dssp CCSBSTTSSSSCCC--CSS-CCCCCSCHHHHHHHHHHHHHC----------CCSSSTTCCCSE-----------EEES--
T ss_pred CcccccccccCCCC--CCC-CCCCcCCHHHHHHHHHHHHHc--------C-CccccCceeeee-----------cCCC--
Confidence 44 99999999997 566 688999988888888888886 4 577777777777 5541
Q ss_pred hhhccCCCCCCc----cccCeEeEecCCCCC-HHHHh--HHHHHHHHhccChhcccchhhcCcc--ccHHHHHHHhhhhc
Q 010751 355 WENHLTTIFPEV----RLKRYLEMRGADGGP-WRRLC--ALPAFWVGLLYDEDSLQNVLDMTAD--WTTGERQMLRNKVP 425 (502)
Q Consensus 355 ~~~hlst~fp~v----R~kg~IEiR~~Da~p-~~~~~--a~aAl~~gLl~~~~~~~~~~~~~~~--~~~~~~~~lr~~aa 425 (502)
.+|.- |--+|||+|+||.+| ....+ ..+.|+..++.......... . .. ....+|++ +|+
T Consensus 270 -------~~p~~~l~~~Gi~yiEvR~~D~~P~~~~GI~~~~~~fl~lfll~~l~~~~~~-~-~~e~~~~~~N~~---~va 337 (757)
T 3ln7_A 270 -------AKKAREFLTTGIQYLEFRLFDLNPFEIYGISLKDAKFIHVFALFMIWMDHTA-D-QEEVELGKARLA---EVA 337 (757)
T ss_dssp -------CSSGGGHHHHCCCEEEECCCCCCTTSTTSSCHHHHHHHHHHHHHHHHSSCCC-C-HHHHHHHHHHHH---HHH
T ss_pred -------CCChhhHHhCCCCEEEEEeccCCCCCcccccHHHHHHHHHHHHHHhcCCCCC-C-HHHHHHHHHHHH---HHH
Confidence 12221 112589999999998 22222 22344444332211011110 1 11 11234444 799
Q ss_pred ccCCCCccCCccHHHHHHHHHHHHHHHHHhcCCchh--hhHHHHHHHHH-cCCChHHHHHHHH
Q 010751 426 KTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKET--GFLNEVAEVVR-TGVTPAEKLLDMY 485 (502)
Q Consensus 426 r~GL~~~~~~~~l~~~~~~LL~~a~~gL~~~G~~e~--~~L~~l~~~~~-~g~t~A~~q~~~~ 485 (502)
++| +....++++++.++++...+-++.+|...+ ..++.+.+.+. ...|++.+.++..
T Consensus 338 ~~g---p~~~~~~~~~~~~ll~~l~~~a~~l~~~~~y~~~~~~~~~~~~~p~~T~sa~~~~~~ 397 (757)
T 3ln7_A 338 FEH---PLEKTAYAVEGELVLLELLSMLEQIGAEPELFEIVKEKLTQFTDPSKTVAGRLVRAI 397 (757)
T ss_dssp HSC---TTSCCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCGGGSHHHHHHHHH
T ss_pred HhC---CCCeehHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcChhcCHHHHHHHHH
Confidence 999 223457899999999999999999987542 22444444444 4478998887765
No 6
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=99.91 E-value=1.6e-24 Score=230.31 Aligned_cols=348 Identities=16% Similarity=0.120 Sum_probs=218.5
Q ss_pred HHHcCC---CCCCCCeeEEEeccccccCCCCCCC--ChhHHHHHHHHHhcccCcchhccccccccccCCCceEEcC-CCC
Q 010751 63 YLASGC---KPKEKWRIGTEHEKFGFEFGTLHPM--KYEQIAELLNSIAERFDWEKVMEGDYIIGLKQKASTLLSS-RGN 136 (502)
Q Consensus 63 ~~~~g~---k~~~~~~iGvE~E~~lvd~~t~~p~--~~~~i~~lL~~l~~~~~~~~~~e~g~~igl~~~~~i~~E~-~~q 136 (502)
||.+.. |.+.++++|||.|.+.||. +|... |.. +.|.. . + ....|+.|+ .+|
T Consensus 19 ~~~~~~~~~~~~~~~~~GIE~E~lRVd~-~G~La~tphP---~~LGs---~--------------l-thp~IttDfsEsq 76 (525)
T 3nzt_A 19 YFQSNAMYDFKKINNLRGIERETLRVTD-CGNLATSNHP---DGLGH---K--------------L-TNNSITVDFSENL 76 (525)
T ss_dssp -------CCCSSCCCEEEEEEEEEEEET-TSCBCCSCSC---GGGCC---T--------------T-TCSSEEESSBTTE
T ss_pred eeeccccccccCCCCCcceEeeeeEECC-CCCcCCCCCh---Hhhcc---C--------------c-cCCCCCchhhhhH
Confidence 666664 5678899999999999998 57633 222 22321 1 0 012799999 899
Q ss_pred eeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCCCCCC-CCCCC---------Cc
Q 010751 137 KAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGLK-DIPVM---------PK 206 (502)
Q Consensus 137 ~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~~~~~-~~~i~---------pk 206 (502)
+|+ .|||+.++.++.++|. .+. +.+...++ .+-.|.+.+ .|+.... ++|+. .|
T Consensus 77 --lE~----iTp~~~s~~ea~~~L~----~l~-----~~v~~~l~-~~E~LWp~S-mPl~~~~~~ipiA~yg~sn~g~~k 139 (525)
T 3nzt_A 77 --LEL----ITKPHDSIDKAIGELY----QLS-----AFTLDNMH-SDEIILNTS-MPLSANDNDIQEADFGSSNSGRMK 139 (525)
T ss_dssp --EEE----ECCCBSSHHHHHHHHH----HHH-----HHHHHHSC-TTEEECCSS-SCCSCCGGGCCBCCCCSSHHHHHH
T ss_pred --hhh----cCCCCCCHHHHHHHHH----HHH-----HHHHHhhC-CCCeEEeec-CCCCCCcCCCceeeccccccCcch
Confidence 999 9999999988888887 444 45555543 455777777 5544333 46665 56
Q ss_pred hHHH-HHHHhcccccchhhhhhcccceeEeecCCCCHH--------------HHHHHHHHHHhhhHHHHHhhhCCCCC--
Q 010751 207 GRYE-IMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEA--------------DMIRKFRAGLALQPIATALFANSPFT-- 269 (502)
Q Consensus 207 ~RY~-~m~~~~~~~g~~g~~mm~~t~s~qVhld~~~~~--------------d~i~~~n~~~~l~P~llALsANSPf~-- 269 (502)
.+|+ .+.+.++ ...++ +||+|+|++++++- -..+..|-.+.+.|++++||.+||++
T Consensus 140 ~~YR~gL~~rYG-----~~~q~--IsGiH~Nfsl~~~~~~~l~~~~~~~~s~~Y~~Lirnf~Ry~Wll~YLfGASP~~~~ 212 (525)
T 3nzt_A 140 RVYRKGLSARYG-----KIMQI--ISGIHYNFSFDKDLISNIATNKQVSISDIYFDVLNNYFEFMWLLPYLFGASPICAK 212 (525)
T ss_dssp HHHHHHHHHHHC-----SGGGG--CCBEEEEEECCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTHHHHHHCCBCEEEG
T ss_pred HHHHHHHHHHhc-----hhhee--eeeEEEEecCCHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 8888 6667662 23334 89999999999751 22256777779999999999999998
Q ss_pred ---CCCCCCcc-------------cccHHHH--hcCCCCCCCCCCCccCCchhHHHHHHHHhhcccee-----ee-ecCe
Q 010751 270 ---EGKPNGYL-------------SMRSHIW--TDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYF-----VY-RKKK 325 (502)
Q Consensus 270 ---~G~~tg~~-------------S~R~~iw--~~~~~~RtG~~P~~F~~~~~fe~yv~~ll~~p~~~-----v~-r~g~ 325 (502)
.|++|++. |.|.-.+ .+.+ ++| ++..|.++.+|.+.++.++++|--- ++ ++|.
T Consensus 213 sF~~g~~~~l~~~~~~t~y~p~atSlR~S~~GY~N~~--q~~-l~i~ynsl~~Yv~~l~~av~tp~~~y~~iG~~d~~g~ 289 (525)
T 3nzt_A 213 TSVKNKPDYLSVLDDKFYVGEYATSLRMSDLGYTSPA--QKD-LAISYDNVKAYVKDLIQATDDTFADYKRIGLYNSQGQ 289 (525)
T ss_dssp GGCSSCCTTCEECSSSEEECTTCSBGGGSSCC--CHH--HHT-CCCCCSCHHHHHHHHHHHHHSBCHHHHHHCSBCTTSC
T ss_pred ccccCCCCcccccCCccccCCCcceeeccccCCCCCc--ccC-CCCCCCCHHHHHHHHHHHHhCcchhhhhhcccccccc
Confidence 89999988 9999884 4444 567 5778999888888888888754100 00 1111
Q ss_pred eeeCCCchHHHhhhCCCCCCCCCCCChhhhhhccCCCCCCccccC------------------eEeEecCCCCC-HHHHh
Q 010751 326 YIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKR------------------YLEMRGADGGP-WRRLC 386 (502)
Q Consensus 326 ~i~~~~~~~~d~~~~~~~~~~g~rP~~~d~~~hlst~fp~vR~kg------------------~IEiR~~Da~p-~~~~~ 386 (502)
++ .+=.+.+ ..-.-+|.+||||+ |||+|+||..| ....+
T Consensus 290 ~~--------QLn~g~L--------------q~enEfYs~IRPK~~~~~ge~P~~aL~~~GI~YIElR~lDlnPf~~~GI 347 (525)
T 3nzt_A 290 RI--------QLNDGIL--------------QIENEYYSAIRPKQIAKRGERPACALYNRGVEYVEVRVLDVDPFEPVGI 347 (525)
T ss_dssp BC--------CSCSBSC--------------SSGGGCCCSEEEECCCCTTSCHHHHHHHHCCCEEEECCCBCCTTSTTSC
T ss_pred hh--------hhccchh--------------hhccceeeccCCCCCCcCCcCchHHHHhcCCCEEEEEeecCCCCcccCc
Confidence 11 1000000 12245677888875 89999999998 22212
Q ss_pred HH--HHHHHHhccChhcccc-hhhcCccccHHHHHHHhhhhcccCCCCcc--------CCccHHHHHHHHHHHHHHHHHh
Q 010751 387 AL--PAFWVGLLYDEDSLQN-VLDMTADWTTGERQMLRNKVPKTGLKTPF--------RDGLLRHVAQDVLKLSKDGLER 455 (502)
Q Consensus 387 a~--aAl~~gLl~~~~~~~~-~~~~~~~~~~~~~~~lr~~aar~GL~~~~--------~~~~l~~~~~~LL~~a~~gL~~ 455 (502)
.. ..|+..++......+. .+.........+|.+ +|+++|.+... ...++++++.+|++...+-++.
T Consensus 348 s~~~l~FL~lfLl~~ll~~s~~~~~~e~~~~~~N~~---~Va~~Gr~p~l~L~~~~~g~~~~~~~wa~ell~~l~~~A~~ 424 (525)
T 3nzt_A 348 SKDTALFVEVMLMTCLDKDAKKYHKDIIKQAKQNLT---AVAIQGRNPQLKLKKLDDDSEILLKDYALELFDEIEAVAKK 424 (525)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHH---HHHHHTTCTTCEEECTTTCCEEEHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---HHHHhccCcCCeeecCCCCcEehHHHHHHHHHHHHHHHHHH
Confidence 21 1233332211110011 111111122345666 79999986311 1247999999999999999999
Q ss_pred cCCch-hhhHHHHHHHHH-cCCChHHHHHHHH
Q 010751 456 RGFKE-TGFLNEVAEVVR-TGVTPAEKLLDMY 485 (502)
Q Consensus 456 ~G~~e-~~~L~~l~~~~~-~g~t~A~~q~~~~ 485 (502)
+| .+ ...++.+.+.+. ...|++.+.++..
T Consensus 425 Ld-~~y~~~l~~~~~~~~~P~lT~Sarll~~~ 455 (525)
T 3nzt_A 425 MP-KEYLDAVEIQKRKVLDISQTPSAKIIELA 455 (525)
T ss_dssp SC-HHHHHHHHHHHHHHHCGGGSHHHHHHHHH
T ss_pred HC-HHHHHHHHHHHHHhhChhcCHHHHHHHHH
Confidence 98 32 122333344444 4478998887664
No 7
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Probab=99.65 E-value=6.9e-16 Score=165.31 Aligned_cols=205 Identities=14% Similarity=0.079 Sum_probs=142.4
Q ss_pred HcCCCCCCCCeeEEEeccccccCCC----CCCCChhHHHHHHHHHhcccCcchhccccccccccCCCceEEcCCCCeeEE
Q 010751 65 ASGCKPKEKWRIGTEHEKFGFEFGT----LHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQKASTLLSSRGNKAYH 140 (502)
Q Consensus 65 ~~g~k~~~~~~iGvE~E~~lvd~~t----~~p~~~~~i~~lL~~l~~~~~~~~~~e~g~~igl~~~~~i~~E~~~q~niE 140 (502)
+...+.+.....|-|+|+++|+.+. .++...+ .++|+.+++... .. .-.....+++|.| .|+||
T Consensus 36 ~~k~r~~d~l~WGDEIEy~LV~~d~~~k~arlsl~~--~eIL~~L~~~~~--~~-------~~~~~p~~~PEyG-ryMlE 103 (692)
T 3ig5_A 36 AAGKRDNDPLFWGDELEYMVVDFDDKERNSMLDVCH--DKILTELNMEDS--SL-------CEANDVSFHPEYG-RYMLE 103 (692)
T ss_dssp HHTTCCCCCCEEEEEEEEEEEEEETTTTEEEECCSC--TTHHHHTTTTTH--HH-------HHHTTEEEECCSB-TTEEE
T ss_pred HhcccCCCcccccceeEEEEEEecCCCceeeecccH--HHHHHHHhhhhh--hc-------ccCCCCcccchhh-ceeec
Confidence 3445677789999999999999652 3355555 578888776310 00 0011127999993 45699
Q ss_pred EeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHc-------------CCeEEeccCCCCCCCCC-------
Q 010751 141 LNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEM-------------GIGFLGIGFQPKWGLKD------- 200 (502)
Q Consensus 141 l~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~-------------g~~l~~~G~hP~~~~~~------- 200 (502)
. ||+.+-.....+.++ ..++ ..|+.+...+++. |..++.+|+-|.....+
T Consensus 104 ~-----TP~~Py~g~~~~~VE---~nMr--~RR~~a~~~l~~~~~~~~~~~~~~~~~~~~ltit~FPrLG~~dFt~p~~~ 173 (692)
T 3ig5_A 104 A-----TPASPYLNYVGSYVE---VNMQ--KRRAIAEYKLSEYARQDSKNNLHVGSRSVPLTLTVFPRMGCPDFINIKDP 173 (692)
T ss_dssp E-----EESSCEESCCTTHHH---HHHH--HHHHHHHHHHHHHHHHHHHTTCSTTEEEEEECCSSCTTTTSTTCBSSSCT
T ss_pred c-----CCCCCCCCChhHHHH---HHHH--HHHHHHHHHHhhhhcccccccccccCCeeEEEeeccccCCCCCCCCCCCC
Confidence 7 555442211111333 2232 3446777777775 88999999988765321
Q ss_pred ---------------CCCCCchHHHHHHHhcccc-cc---------------h---------------------------
Q 010751 201 ---------------IPVMPKGRYEIMRNYMPKV-GS---------------L--------------------------- 222 (502)
Q Consensus 201 ---------------~~i~pk~RY~~m~~~~~~~-g~---------------~--------------------------- 222 (502)
.-+++.+||..|.+-+..+ |. .
T Consensus 174 ~~~~~~~s~Slf~PDe~In~HpRF~tLT~NIR~RRG~KV~InIPif~D~nTp~~d~ti~~~~~f~~~~~~~~~aa~p~~I 253 (692)
T 3ig5_A 174 WNHKNAASRSLFLPDEVINRHVRFPNLTASIRTRRGEKVCMNVPMYKDIATPETDDSIYDRDWFLPEDKEAKLASKPGFI 253 (692)
T ss_dssp TSSCCTTTCCSSCCGGGBCSSTHHHHHHHHHHHHHSSCCCEEEEBCCCTTCCSSCTTCCCCCSSTTGGGTHHHHCCTTEE
T ss_pred CCCCCcccccccCCHhhcCCCcchHHHHHHHHHhcCCCceEeeccccCCCCCCCCcccchhhhCCccccccccccCCCee
Confidence 3468899999998755322 21 0
Q ss_pred -hhhhhc--ccceeEeecCCCCHHHHHHHHHHHHhhhHHHHHhhhCCCCCCCCCCCcccccHHHHhcCCCCCC
Q 010751 223 -GLDMMF--RTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRA 292 (502)
Q Consensus 223 -g~~mm~--~t~s~qVhld~~~~~d~i~~~n~~~~l~P~llALsANSPf~~G~~tg~~S~R~~iw~~~~~~Rt 292 (502)
-..|++ .+|++|||+++++.+++...|+.+..+.|+++||+|||||+.|. --+...|..+.++..++|+
T Consensus 254 yMDaMgFGMGccCLQvTfQa~ni~eAR~lYDqL~~l~PimLALSAASP~~kG~-lad~DtRW~vIs~sVDdRt 325 (692)
T 3ig5_A 254 YMDSMGFGMGCSCLQVTFQAPNINKARYLYDALVNFAPIMLAFSAAAPAFKGW-LADQDVRWNVISGAVDDRT 325 (692)
T ss_dssp EECSTHHHHTSCBEEEEEEESSHHHHHHHHHHHTTHHHHHHHHTCCCCEETTE-EBSBCCSHHHHHHHTCCCC
T ss_pred EeccccccccccceeeeeccCCHHHHHHHHHhhhhhHHHHHHHhhcChhhcce-ecccchhHHHHHhhccCCC
Confidence 001111 16789999999999999999999999999999999999999998 4788899999998877776
No 8
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=96.90 E-value=0.0033 Score=64.31 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=64.8
Q ss_pred ccCCCCCC-HHHHHHHHHcCCCCCCCCeeEEEeccccccCCCC---------CC-----------CC--h-h-HHHHHHH
Q 010751 49 VVVTEPLT-KEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTL---------HP-----------MK--Y-E-QIAELLN 103 (502)
Q Consensus 49 ~~~~~~~~-~~~l~~~~~~g~k~~~~~~iGvE~E~~lvd~~t~---------~p-----------~~--~-~-~i~~lL~ 103 (502)
+....|.+ +..+++++++ .+-...+|+|+||++++.+.. .| .. + . -+.++..
T Consensus 101 P~~~~pR~iLkr~~~~~~~---~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~~~g~y~~~~~~~~~~~~~~~~~i~~ 177 (356)
T 2d3a_A 101 PIPTNKRYSAAKIFSSPEV---AAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYK 177 (356)
T ss_dssp BCTTCCHHHHHHHHHSHHH---HHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCSCSSSCTTCCSTTTCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh---cCCeeEEecceEEEEEecCCCcccccccCCCCCCCCCcCcCcccchHHHHHHHHHHHH
Confidence 44555666 5666666653 112348999999999985421 11 01 0 1 1222222
Q ss_pred HHhcccCcchhccccccccccCCCceEEcC-CCCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 010751 104 SIAERFDWEKVMEGDYIIGLKQKASTLLSS-RGNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEE 182 (502)
Q Consensus 104 ~l~~~~~~~~~~e~g~~igl~~~~~i~~E~-~~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~ 182 (502)
.+.. .|+ .- +.+..|. .|| .|| +..+..-+ ++++.+. ..|..++++|++
T Consensus 178 ~l~~-~Gi------------~v-e~~h~E~~pgQ--~Ei----~~~~~~~l-~aAD~~~---------~~k~~vk~vA~~ 227 (356)
T 2d3a_A 178 ACLY-AGI------------NI-SGINGEVMPGQ--WEF----QVGPSVGI-SSGDQVW---------VARYILERITEI 227 (356)
T ss_dssp HHHH-HTC------------CE-EEEEECSSTTE--EEE----EEEEEETH-HHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHH-CCC------------CE-EEeecCcCCCc--eEE----ecCCCCHH-HHHHHHH---------HHHHHHHHHHHH
Confidence 2222 222 11 1688998 689 999 88885555 4555554 234699999999
Q ss_pred cCCeEEeccCCCCC
Q 010751 183 MGIGFLGIGFQPKW 196 (502)
Q Consensus 183 ~g~~l~~~G~hP~~ 196 (502)
+|+.. -++|+.
T Consensus 228 ~G~~a---TFmpKP 238 (356)
T 2d3a_A 228 AGVVV---TFDPKP 238 (356)
T ss_dssp HTEEE---ECCSCS
T ss_pred hCCEE---EECCCc
Confidence 99654 345543
No 9
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.019 Score=58.90 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=33.7
Q ss_pred ceEEcC-CCCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEE
Q 010751 128 STLLSS-RGNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFL 188 (502)
Q Consensus 128 ~i~~E~-~~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~ 188 (502)
.+..|. .|| .|+ +..|+.-+ ++++.+. .+|..++++|+++|+...
T Consensus 189 ~~h~E~~pGQ--~Ei----~~~~~~~l-~aAD~~~---------~~K~~vk~vA~~~G~~AT 234 (370)
T 3fky_A 189 GINAEVMPSQ--WEF----QVGPCTGI-DMGDQLW---------MARYFLHRVAEEFGIKIS 234 (370)
T ss_dssp EEEECSSTTE--EEE----EEEEEETH-HHHHHHH---------HHHHHHHHHHHTTTCEEE
T ss_pred eeecCcCCCc--eEE----ecCCCCHH-HHHHHHH---------HHHHHHHHHHHHhCcEEE
Confidence 688898 699 999 88887655 4555554 234699999999997653
No 10
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=96.51 E-value=0.025 Score=58.38 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=63.8
Q ss_pred ccCCCCCC-HHHHHHHHHcCCCCCCCCeeEEEeccccccCCCC---CC-----C-----------C--h--hHHHHHHHH
Q 010751 49 VVVTEPLT-KEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTL---HP-----M-----------K--Y--EQIAELLNS 104 (502)
Q Consensus 49 ~~~~~~~~-~~~l~~~~~~g~k~~~~~~iGvE~E~~lvd~~t~---~p-----~-----------~--~--~~i~~lL~~ 104 (502)
+....|.+ +..+++.++ | -...+|+|+||++++.+.. .+ . . + +-+.++...
T Consensus 127 P~~~~pR~iLkr~~~~~~-g----~~~~~G~E~EF~Lf~~~~~~~~~~~~g~p~~~g~y~~~~~~~~~~~~~~~~~i~~~ 201 (384)
T 2ojw_A 127 PAETNLRHTCKRIMDMVS-N----QHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRA 201 (384)
T ss_dssp BCTTCCHHHHHHHHHHTG-G----GCCEEEEEEEEEEEC-CCSBTTCCTTSCCSCSSSCTTCCSTTTCCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHh-C----CEEEEEeeeEEEEEccCCCcccccCCCccCCCCCCCcccccchHHHHHHHHHHHHH
Confidence 44555666 566666665 3 3458999999999986421 01 0 0 0 112222222
Q ss_pred HhcccCcchhccccccccccCCCceEEcC-CCCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHc
Q 010751 105 IAERFDWEKVMEGDYIIGLKQKASTLLSS-RGNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEM 183 (502)
Q Consensus 105 l~~~~~~~~~~e~g~~igl~~~~~i~~E~-~~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~ 183 (502)
+.. .|+ .- +.+..|. .|| .|| +..|..-+. +++.+. ..|..++++|+++
T Consensus 202 l~~-~Gi------------~v-e~~h~E~~pgQ--~Ei----~~~~~~~l~-aAD~~~---------~~k~~vk~vA~~~ 251 (384)
T 2ojw_A 202 CLY-AGV------------KI-AGTNAEVMPAQ--WEF----QIGPCEGIS-MGDHLW---------VARFILHRVCEDF 251 (384)
T ss_dssp HHH-HTC------------CE-EEEEECSSTTE--EEE----EEEEEETTH-HHHHHH---------HHHHHHHHHHHHH
T ss_pred HHH-CCC------------Ce-EeeecCCCCcc--eEE----EcCCCcHHH-HHHHHH---------HHHHHHHHHHHHh
Confidence 222 232 10 1688898 589 999 888866553 445544 2346999999999
Q ss_pred CCeEEeccCCCC
Q 010751 184 GIGFLGIGFQPK 195 (502)
Q Consensus 184 g~~l~~~G~hP~ 195 (502)
|+... +.|+
T Consensus 252 Gl~aT---FmpK 260 (384)
T 2ojw_A 252 GVIAT---FDPK 260 (384)
T ss_dssp TCEEE---CCSC
T ss_pred CCEEE---Eecc
Confidence 97643 4554
No 11
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=96.01 E-value=0.042 Score=57.70 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=62.6
Q ss_pred ccCCCCCC-HHHHHHHHH-cCCCCCCCCeeEEEeccccccCCCCCCCCh-h-----H----HHHHHHHHhcccCcchhcc
Q 010751 49 VVVTEPLT-KEDLVGYLA-SGCKPKEKWRIGTEHEKFGFEFGTLHPMKY-E-----Q----IAELLNSIAERFDWEKVME 116 (502)
Q Consensus 49 ~~~~~~~~-~~~l~~~~~-~g~k~~~~~~iGvE~E~~lvd~~t~~p~~~-~-----~----i~~lL~~l~~~~~~~~~~e 116 (502)
+....|.+ +...++.++ .|. ...+|+|+||++++......-.+ . . +.++...+.. .|+
T Consensus 103 p~~~~pR~~L~r~~~~~~~~G~----~~~~g~E~EF~l~~~~p~~~~~~y~~~~~~~~~~~~~~i~~~l~~-~Gi----- 172 (443)
T 4hpp_A 103 PWPACPRSLLRAEVERYRDSGL----QVIAAFEHEFSLLGLPGERPAAAFSLQAQRAAGQFPGWLVSALAQ-AGT----- 172 (443)
T ss_dssp BCTTCHHHHHHHHHHHHHHTTE----EEEEEEEEEEEEECCCSSSCCCTTCHHHHHHTTTHHHHHHHHHHH-TTC-----
T ss_pred CCCCChHHHHHHHHHHHHHcCC----eEEEEeeeEEEEeccccCCCCccCCCCcccchHHHHHHHHHHHHH-CCC-----
Confidence 44455666 555555554 355 36999999999997422111111 1 0 2333333322 232
Q ss_pred ccccccccCCCceEEcC-CCCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEE
Q 010751 117 GDYIIGLKQKASTLLSS-RGNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFL 188 (502)
Q Consensus 117 ~g~~igl~~~~~i~~E~-~~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~ 188 (502)
.- +.+..|. .|| .|+ +..+..-+ ++++.+. ..|..++.+|+++|+...
T Consensus 173 -------~v-e~~h~E~~pgQ--~Ei----~~~~~~~l-~aAD~~~---------~~k~~vk~vA~~~G~~aT 221 (443)
T 4hpp_A 173 -------EP-EMFLPEYGQRQ--YEV----TCRPAQGV-AAADRAV---------NVREVTREVARQMGLRTC 221 (443)
T ss_dssp -------CE-EEEEECSSTTE--EEE----EECCEETH-HHHHHHH---------HHHHHHHHHHHHHTCEEE
T ss_pred -------Ce-EEeecCCCCCc--eEE----EecCCcHH-HHHHHHH---------HHHHHHHHHHHHhCCEEE
Confidence 10 1678898 699 999 88876544 4555554 234699999999998654
No 12
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=95.79 E-value=0.08 Score=55.63 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=63.4
Q ss_pred ccCCCCCC-HHHHHHHHHcCCCCCCC-CeeEEEeccccccCCC-CC---------------CCChh--HHHHHHHHHhcc
Q 010751 49 VVVTEPLT-KEDLVGYLASGCKPKEK-WRIGTEHEKFGFEFGT-LH---------------PMKYE--QIAELLNSIAER 108 (502)
Q Consensus 49 ~~~~~~~~-~~~l~~~~~~g~k~~~~-~~iGvE~E~~lvd~~t-~~---------------p~~~~--~i~~lL~~l~~~ 108 (502)
+....|.+ +...++.+++- +-. ..+|+|+||++++.+. +. |++.. -..++...+..
T Consensus 103 p~~~~pR~iLkr~~~~~~~~---G~~~~~~g~E~EF~l~~~~~~g~~~~~~~~~~~y~~~~~~d~~~~~~~~i~~~l~~- 178 (444)
T 3qaj_A 103 PFEGDPRNNLKRILKEMEDL---GFSDFNLGPEPEFFLFKLDEKGEPTLELNDKGGYFDLAPTDLGENCRRDIVLELEE- 178 (444)
T ss_dssp BCSSCHHHHHHHHHHHHHTT---TCCEEEEEEEECEEEEEECSSSCEEEEESCCCCTTCCTTTSCCTTHHHHHHHHHHT-
T ss_pred CCCCChHHHHHHHHHHHHHc---CCCeeeEEeceEEEEEecCCCCCCCCcCcCCCCccccCCCcchHHHHHHHHHHHHH-
Confidence 44455666 55666666531 113 5799999999998532 21 11111 13344444432
Q ss_pred cCcchhccccccccccCCCceEEcC-CCCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeE
Q 010751 109 FDWEKVMEGDYIIGLKQKASTLLSS-RGNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGF 187 (502)
Q Consensus 109 ~~~~~~~e~g~~igl~~~~~i~~E~-~~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l 187 (502)
.|+.. +.+..|. .|| .|+ +..+.. .-++++.+. ..|..++.+|+++|+..
T Consensus 179 ~Gi~v-------------e~~h~E~~pGQ--~Ei----~~~~~~-~l~aAD~~~---------~~k~~vk~vA~~~G~~a 229 (444)
T 3qaj_A 179 MGFEI-------------EASHHEVAPGQ--HEI----DFKYAG-AVRSCDDIQ---------TFKLVVKTIARKHGLHA 229 (444)
T ss_dssp TTCCE-------------EEEEECSSTTE--EEE----EECCEE-HHHHHHHHH---------HHHHHHHHHHHHTTEEE
T ss_pred CCCCe-------------EEeEcCcCCCc--EEE----ecCCCh-HHHHHHHHH---------HHHHHHHHHHHHcCCEE
Confidence 33211 1688898 699 999 888764 445555554 23469999999999654
No 13
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=95.67 E-value=0.077 Score=56.15 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=57.9
Q ss_pred ceEEcC-CC-CeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCCCCCCCCCCCC
Q 010751 128 STLLSS-RG-NKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPKWGLKDIPVMP 205 (502)
Q Consensus 128 ~i~~E~-~~-q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~~~~~~~~i~p 205 (502)
.+..|. .| | .|| +..+. +.-.+++.+. ..|..++.+|+++|+... ++|+.-..
T Consensus 208 ~~h~E~apggQ--~Ei----~~~~~-~~l~aAD~~~---------~~k~~vk~vA~~hGl~at---FmpKP~~g------ 262 (468)
T 1f52_A 208 AHHHEVATAGQ--NEV----ATRFN-TMTKKADEIQ---------IYKYVVHNVAHRFGKTAT---FMPKPMFG------ 262 (468)
T ss_dssp EEEECSSTTTE--EEE----EECCE-EHHHHHHHHH---------HHHHHHHHHHHHTTCEEE---CCSCSSTT------
T ss_pred EeecCCCCcee--EEE----eccCC-CHHHHHHHHH---------HHHHHHHHHHHHhCCEEE---EeCCCCCC------
Confidence 688898 44 9 999 77774 4545556655 223699999999998654 45543211
Q ss_pred chHHHHHHHhcccccchhhhhhcccceeEeecCCCC--------------HHHHHHHHHHHHhhhHHHHHhhhC
Q 010751 206 KGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSS--------------EADMIRKFRAGLALQPIATALFAN 265 (502)
Q Consensus 206 k~RY~~m~~~~~~~g~~g~~mm~~t~s~qVhld~~~--------------~~d~i~~~n~~~~l~P~llALsAN 265 (502)
. ...|+|+|+.+.+ .+.+...+..++..+|.+.|+++.
T Consensus 263 ------------------~----~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGll~h~~~l~a~~ap 314 (468)
T 1f52_A 263 ------------------D----NGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANP 314 (468)
T ss_dssp ------------------S----CCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSC
T ss_pred ------------------C----CCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhHhHhcC
Confidence 1 1345555553321 024556667778889999999763
No 14
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=95.34 E-value=0.12 Score=54.78 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=33.3
Q ss_pred ceEEcCC--CCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEE
Q 010751 128 STLLSSR--GNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFL 188 (502)
Q Consensus 128 ~i~~E~~--~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~ 188 (502)
.+..|.+ || .|| +..+.. .-++++.+. ..|..++.+|+++|+...
T Consensus 211 ~~h~E~~~pGQ--~Ei----~~~~~~-~l~aAD~~~---------~~k~~vk~vA~~~G~~aT 257 (473)
T 3ng0_A 211 KHHHEVASGGQ--NEL----GIKFDK-LVNSADNLM---------IYKYVIKNVAKKYGKTVT 257 (473)
T ss_dssp EEEECSSTTTE--EEE----EECCEE-HHHHHHHHH---------HHHHHHHHHHHHTTCEEE
T ss_pred EeecCcCCCCc--eEE----EccCCC-HHHHHHHHH---------HHHHHHHHHHHHhCCEEE
Confidence 6888986 89 999 887754 445556655 234699999999998653
No 15
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=94.40 E-value=0.48 Score=50.24 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=32.4
Q ss_pred ceEEcC-C-CCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEE
Q 010751 128 STLLSS-R-GNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFL 188 (502)
Q Consensus 128 ~i~~E~-~-~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~ 188 (502)
.+..|. . || .|+ +..+..-+ ++++.+. ..|..++++|+++|+...
T Consensus 223 ~~h~E~gp~GQ--~Ei----~~~~~~~l-~aAD~~~---------~~k~~vk~vA~~~G~~aT 269 (486)
T 4acf_A 223 KGHHEVGSGGQ--AEI----NYQFNSLL-HAADDMQ---------LYKYIIKNTAWQNGKTVT 269 (486)
T ss_dssp EEEECSSTTTE--EEE----EECCEEHH-HHHHHHH---------HHHHHHHHHHHHTTCEEE
T ss_pred eeeeeeeccce--eEE----eccCcchh-hhhhHHH---------HHHHHHHHHHHHcCCeEE
Confidence 678896 3 89 999 87776544 4555554 234699999999998653
No 16
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=92.77 E-value=0.27 Score=54.19 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=34.4
Q ss_pred ceEEcC-CCCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCC
Q 010751 128 STLLSS-RGNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPK 195 (502)
Q Consensus 128 ~i~~E~-~~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~ 195 (502)
.+..|. .|| .|+ +..+.. .-.+++.+. ..|..++.+|+++|+... ++|+
T Consensus 282 ~~H~EvaPGQ--~EI----~~~~~~-al~AAD~~~---------l~K~vvK~VA~~hGl~AT---FMPK 331 (729)
T 3o6x_A 282 TRHNEVAPNQ--FEL----APIFEN-CNLANDHNQ---------LVMDLMKRIARKHHFAVL---FHEK 331 (729)
T ss_dssp EECBCSSTTE--ECC----EECCEE-HHHHHHHHH---------HHHHHHHHHHHHTTEEEE---CSSC
T ss_pred EeecCCCCCc--eEe----ccCCCh-HHHHHHHHH---------HHHHHHHHHHHHhCCEEE---Eecc
Confidence 577788 599 999 877754 445555554 223599999999997654 4554
No 17
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=80.55 E-value=0.25 Score=51.50 Aligned_cols=122 Identities=10% Similarity=-0.003 Sum_probs=65.8
Q ss_pred cccCCCCCC-HHHHHHHHHc-CCCCCCCCeeEEEeccccccCCC---CCCCChhHHHHHHHHHhcccCc-chhccccccc
Q 010751 48 AVVVTEPLT-KEDLVGYLAS-GCKPKEKWRIGTEHEKFGFEFGT---LHPMKYEQIAELLNSIAERFDW-EKVMEGDYII 121 (502)
Q Consensus 48 ~~~~~~~~~-~~~l~~~~~~-g~k~~~~~~iGvE~E~~lvd~~t---~~p~~~~~i~~lL~~l~~~~~~-~~~~e~g~~i 121 (502)
.+....|.+ +...++.+++ |... ...+|+|+|||+++.+. +.|.-+.. .. . ....++ +.+.+.=. .
T Consensus 93 ~P~~~~pR~iLk~~~~~~~~~G~~d--~~~~g~E~EF~l~~~~~~~~~~p~y~~~-~~-~---~~~~~~~~~i~~~l~-~ 164 (421)
T 2j9i_A 93 AAAAASPRYIARAALAQLQAAGAAA--GLLSAFIADFCIFGVPEVINSKTISFPA-ST-T---AAAADQPQEAAAGGA-A 164 (421)
T ss_dssp SSCSCCHHHHHHHHHHHHHHTTSCS--EECCEECCCCEEESCCEEEECSSCEEEE-CC-C---TTCTTGGGSCCTTCC-C
T ss_pred CCCCCChHHHHHHHHHHHHhcCCcc--CceEEeeeEEEEEecCCCCCCCCCcCCC-Cc-c---cchhHHHHHHHHHHh-C
Confidence 344455555 4555555553 4321 46899999999998642 22211110 00 0 000000 12222222 3
Q ss_pred cccCCCceEEcC-CCCeeEEEeeccCcchhhcHHHHHHHHHHHHHHHHhhchHHHHHHHHHHcCCeEEeccCCCCC
Q 010751 122 GLKQKASTLLSS-RGNKAYHLNLAVSLSLVVHLLKLCIKLVLRLIHTYISAAGGMVKAVAEEMGIGFLGIGFQPKW 196 (502)
Q Consensus 122 gl~~~~~i~~E~-~~q~niEl~~~~s~~p~~~~~~~~~el~~~~~~l~~~~~r~~l~~~a~~~g~~l~~~G~hP~~ 196 (502)
|+.- +.+..|. .|| .|+ +..+..+.-++++.+. ..|..++.+|+++|+... ++|+.
T Consensus 165 Gi~v-e~~h~E~apgQ--~Ei----~~~~~~~~l~aaD~~~---------~~k~~vk~vA~~~G~~at---FmpKP 221 (421)
T 2j9i_A 165 GAAA-GAAGGAAAAGA--AEI----CFLPEAAGAAAADNAF---------TLRTGLQEVARRYNAIAS---AAAAA 221 (421)
T ss_dssp SCCC-BTTBCCCCCSS--CCT----TTTTTTCCSCTTTHHH---------HHHHHHHHHHHTTTCEEE---CCTTS
T ss_pred CCCe-EEeecCCCCCc--EEE----ecCCCChHHHHHHHHH---------HHHHHHHHHHHHhCCEEE---EcCCc
Confidence 4432 2678888 699 999 8887662333445544 223599999999997653 45543
No 18
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=27.34 E-value=15 Score=21.97 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=12.0
Q ss_pred ccCCCCCCccccCeE
Q 010751 358 HLTTIFPEVRLKRYL 372 (502)
Q Consensus 358 hlst~fp~vR~kg~I 372 (502)
..|.+|-|||+.|++
T Consensus 8 frsslflwvr~ng~~ 22 (26)
T 2bp3_S 8 FRSSLFLWVRPNGRV 22 (26)
T ss_pred hhheEEEEEccCCee
Confidence 457789999999875
Done!