Your job contains 1 sequence.
>010753
MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL
KADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLS
VLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRY
VRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLEL
KPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTIDDD
TRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGSKVVILSSKD
KSVDVGTYSIGVYGFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQCKNCKRFI
PSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREMEKHMKVFHE
QCSCPCGVVLENAAMVSYCPLP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010753
(502 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130120 - symbol:AT4G15420 species:3702 "Arabi... 1494 2.1e-156 2
DICTYBASE|DDB_G0271122 - symbol:ufd1 "ubiquitin fusion de... 299 2.3e-26 1
TAIR|locus:2066122 - symbol:AT2G29070 species:3702 "Arabi... 279 4.7e-24 1
TAIR|locus:2050054 - symbol:UFD1 "AT2G21270" species:3702... 278 6.2e-24 1
ZFIN|ZDB-GENE-040718-150 - symbol:ufd1l "ubiquitin fusion... 276 1.0e-23 1
UNIPROTKB|F1NVD8 - symbol:UFD1L "Uncharacterized protein"... 271 3.8e-23 1
UNIPROTKB|J9NYF2 - symbol:UFD1L "Uncharacterized protein"... 271 3.8e-23 1
UNIPROTKB|Q92890 - symbol:UFD1L "Ubiquitin fusion degrada... 271 3.8e-23 1
UNIPROTKB|F1RK61 - symbol:UFD1L "Uncharacterized protein"... 271 3.8e-23 1
MGI|MGI:109353 - symbol:Ufd1l "ubiquitin fusion degradati... 271 3.8e-23 1
RGD|619822 - symbol:Ufd1l "ubiquitin fusion degradation 1... 271 3.8e-23 1
UNIPROTKB|Q0P568 - symbol:UFD1L "Ubiquitin fusion degrada... 270 4.9e-23 1
UNIPROTKB|A6NJ11 - symbol:UFD1L "Ubiquitin fusion degrada... 269 6.4e-23 1
UNIPROTKB|C9IZG3 - symbol:UFD1L "Ubiquitin fusion degrada... 269 6.4e-23 1
FB|FBgn0036136 - symbol:Ufd1-like "Ubiquitin fusion-degra... 248 2.0e-22 2
TAIR|locus:2120247 - symbol:AT4G38930 "AT4G38930" species... 263 3.0e-22 1
GENEDB_PFALCIPARUM|PF14_0178 - symbol:PF14_0178 "hypothet... 259 8.3e-22 1
UNIPROTKB|F1PAI5 - symbol:UFD1L "Uncharacterized protein"... 259 8.3e-22 1
UNIPROTKB|Q8ILR6 - symbol:UFD1 "Ubiquitin fusion degradat... 259 8.3e-22 1
ASPGD|ASPL0000066677 - symbol:AN10877 species:162425 "Eme... 175 1.4e-21 3
SGD|S000003280 - symbol:UFD1 "Substrate-recruiting cofact... 249 2.5e-19 1
CGD|CAL0002326 - symbol:orf19.5833 species:5476 "Candida ... 248 3.6e-19 1
POMBASE|SPBC16A3.09c - symbol:ufd1 "Cdc48-Ufd1-Npl4 compl... 236 6.5e-18 1
UNIPROTKB|G4NAF1 - symbol:MGG_03175 "Ubiquitin fusion deg... 232 5.2e-17 1
WB|WBGene00006733 - symbol:ufd-1 species:6239 "Caenorhabd... 213 5.3e-15 1
UNIPROTKB|C9JNP9 - symbol:UFD1L "Ubiquitin fusion degrada... 197 5.6e-15 1
UNIPROTKB|C9J6N9 - symbol:UFD1L "Ubiquitin fusion degrada... 148 1.2e-09 1
UNIPROTKB|C9J7C8 - symbol:UFD1L "Ubiquitin fusion degrada... 119 1.6e-06 1
UNIPROTKB|I3L3D9 - symbol:XAF1 "XIAP-associated factor 1"... 114 5.6e-06 1
UNIPROTKB|C9J7Z8 - symbol:XAF1 "XIAP-associated factor 1"... 114 5.0e-05 1
UNIPROTKB|F8VVF3 - symbol:TRAFD1 "TRAF-type zinc finger d... 103 8.5e-05 1
UNIPROTKB|F8VWK2 - symbol:TRAFD1 "TRAF-type zinc finger d... 98 0.00030 1
UNIPROTKB|Q6GPH4 - symbol:XAF1 "XIAP-associated factor 1"... 114 0.00081 1
>TAIR|locus:2130120 [details] [associations]
symbol:AT4G15420 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004854 InterPro:IPR015880 Pfam:PF03152 SMART:SM00355
EMBL:CP002687 GO:GO:0008270 GO:GO:0005622 GO:GO:0006511
InterPro:IPR007280 Pfam:PF04151 PANTHER:PTHR12555 EMBL:AF446353
EMBL:AY086035 EMBL:AY143927 EMBL:DQ778953 IPI:IPI00544100
RefSeq:NP_567465.1 UniGene:At.4344 UniGene:At.71880
ProteinModelPortal:Q8W1E7 SMR:Q8W1E7 STRING:Q8W1E7 PRIDE:Q8W1E7
EnsemblPlants:AT4G15420.1 GeneID:827213 KEGG:ath:AT4G15420
InParanoid:Q8W1E7 OMA:FHEPLQC ProtClustDB:PLN03086
Genevestigator:Q8W1E7 Uniprot:Q8W1E7
Length = 561
Score = 1494 (531.0 bits), Expect = 2.1e-156, Sum P(2) = 2.1e-156
Identities = 282/459 (61%), Positives = 360/459 (78%)
Query: 49 RSRRLDAIDAQLKADQEMQESLLAGGGIVFYHTLEALPFQGSGDKIKLPPSCFTELSGQG 108
R+RRLDAI+AQ+KADQ MQESL++G GIVF +A+ FQG+GDKIKLPPSCFTELS QG
Sbjct: 49 RARRLDAIEAQIKADQHMQESLVSGDGIVFERVFQAVSFQGNGDKIKLPPSCFTELSDQG 108
Query: 109 AFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPS 168
AFDKGPL+F+LSV+ ++ ++THSGVLEFTA++G +GLPPHVW NLF +
Sbjct: 109 AFDKGPLYFELSVVDHA----------DNKKTTHSGVLEFTAEDGTIGLPPHVWSNLFST 158
Query: 169 DTPNN-SFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVN 227
P + VE+RY+RLPKG+YAKLQP+ +GF++LPN KA+LET LRQHATLS DDVL VN
Sbjct: 159 HDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLSLDDVLLVN 218
Query: 228 YGELAYKLKVLELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEE 287
YG+++YKL+VLEL+P++S+SVLETDIEVDIVSPD +S +Q+ LKPL +GKSESG VEE
Sbjct: 219 YGQVSYKLQVLELRPATSISVLETDIEVDIVSPDIVSDQPNQHVLKPLQYGKSESGTVEE 278
Query: 288 GKYVFYKFTIDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSH 347
G+Y +YKF ID+ T +K+++G + V+VD E G DT +YVS+HP+LFP+ + HEWSSH
Sbjct: 279 GRYDYYKFVIDEATVEKVMAGSVKVIVKVDVEKVGADTDLYVSKHPVLFPSLNQHEWSSH 338
Query: 348 DAGSKVVILSSKDKSVDVGTYSIGVYGFKDMTKFQVLVTLEDD-SGRKVGQEATSSSSSI 406
D GSK +IL SK++++ GTYSIGVYGFK K+QV V +++ G KVG+ A SSSS +
Sbjct: 339 DVGSKTLILVSKERALSSGTYSIGVYGFKGTVKYQVSVLVQESIDGAKVGERAVSSSSDV 398
Query: 407 EMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGL 466
DTV+C+NCK IPSRSI LHE YCSRH+V C H GCG+VLR EEA++H+HC+KCG+ L
Sbjct: 399 --DTVECRNCKHSIPSRSIALHEVYCSRHNVVCNHHGCGIVLRVEEAKNHLHCEKCGKAL 456
Query: 467 QRREMEKHMKVFHEQCSCPCGVVLENAAMVSY----CPL 501
Q EMEKH+KVFHE +C CG+VLE MV + CPL
Sbjct: 457 QPTEMEKHLKVFHEPLTCGCGIVLEKEQMVQHQGKDCPL 495
Score = 52 (23.4 bits), Expect = 2.1e-156, Sum P(2) = 2.1e-156
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 459 CDKCGQGLQRREMEKHMKVFHEQCS 483
CD CG+ + ++M+ H H + S
Sbjct: 537 CDSCGRSVMLKDMDIHQIAVHGKSS 561
>DICTYBASE|DDB_G0271122 [details] [associations]
symbol:ufd1 "ubiquitin fusion degradation protein
UFD1 family protein" species:44689 "Dictyostelium discoideum"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA;ISS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
dictyBase:DDB_G0271122 GO:GO:0043161 GenomeReviews:CM000151_GR
EMBL:AAFI02000006 GO:GO:0006511 eggNOG:COG5140 KO:K14016
PANTHER:PTHR12555 RefSeq:XP_645814.1 HSSP:P53044
ProteinModelPortal:Q55BK0 SMR:Q55BK0 STRING:Q55BK0
EnsemblProtists:DDB0238023 GeneID:8617805 KEGG:ddi:DDB_G0271122
OMA:NQTNEAS Uniprot:Q55BK0
Length = 330
Score = 299 (110.3 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 74/206 (35%), Positives = 109/206 (52%)
Query: 119 LSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEV 178
LS L+ + P E S + +H GVLEF A+EG LP + +NL F+++
Sbjct: 60 LSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNL---QLKEGEFIDI 116
Query: 179 RYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVL 238
+ L KGT+ K+QP F ++ N KAVLE SLR+ ATL++DD + ++Y Y LKV+
Sbjct: 117 KNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVV 176
Query: 239 ELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESGMVEEGKYVFYKFTID 298
ELKP++++S++E D+ VD P D T T P G SG +G F
Sbjct: 177 ELKPANAISIIEADVSVDFAPPMDSKEATSPSTSSP---GSHVSGP-SKG----LTFGPA 228
Query: 299 DDTRKKIVSGEKRAEVRVDSEIDGGD 324
+ K I G+K+ + DS+ D D
Sbjct: 229 STSAKPIPGGKKKKD-ESDSDSDSDD 253
>TAIR|locus:2066122 [details] [associations]
symbol:AT2G29070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002685 GO:GO:0006511 HOGENOM:HOG000212737
KO:K14016 OMA:IDKAHLE PANTHER:PTHR12555 EMBL:BT011682 EMBL:BT012260
IPI:IPI00519577 RefSeq:NP_973557.1 UniGene:At.43163
ProteinModelPortal:Q6NLS0 SMR:Q6NLS0 EnsemblPlants:AT2G29070.2
GeneID:817455 KEGG:ath:AT2G29070 TAIR:At2g29070 InParanoid:Q6NLS0
PhylomeDB:Q6NLS0 ProtClustDB:CLSN2918124 Genevestigator:Q6NLS0
Uniprot:Q6NLS0
Length = 312
Score = 279 (103.3 bits), Expect = 4.7e-24, P = 4.7e-24
Identities = 62/157 (39%), Positives = 88/157 (56%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+L+ LH E P + +++H GVLEFTADEG V LP + +N+ ++
Sbjct: 40 RLASLHIEYPMLFQLSNVSVEKTSHCGVLEFTADEGLVYLPYWMMQNM---SLEEGDVMQ 96
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V+ + L KGTY KLQP F ++ N KA+LET+LR ++ L+ D + V Y Y + V
Sbjct: 97 VKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKQYYINV 156
Query: 238 LELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKP 274
+E KPSS+VS++ETD EVD P D L P
Sbjct: 157 VEAKPSSAVSIIETDCEVDFAPPLDYKEPEKPQKLTP 193
>TAIR|locus:2050054 [details] [associations]
symbol:UFD1 "AT2G21270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005829
EMBL:CP002685 EMBL:AC006841 GO:GO:0006511 eggNOG:COG5140
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 EMBL:AK317375
IPI:IPI00846355 RefSeq:NP_001077933.1 UniGene:At.39582
ProteinModelPortal:A8MQW3 SMR:A8MQW3 PaxDb:A8MQW3 PRIDE:A8MQW3
EnsemblPlants:AT2G21270.3 GeneID:816666 KEGG:ath:AT2G21270
TAIR:At2g21270 OMA:AERTSHC PhylomeDB:A8MQW3 ProtClustDB:CLSN2688302
Genevestigator:A8MQW3 Uniprot:A8MQW3
Length = 340
Score = 278 (102.9 bits), Expect = 6.2e-24, P = 6.2e-24
Identities = 66/180 (36%), Positives = 100/180 (55%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+L+ LH + P E R TH GVLEF A+EG + +P + +NL + V
Sbjct: 66 RLASLHIDYPMLFELRNAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQE---GDIVR 122
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
VR V LPKGTY KLQP F ++ N KA+LET+LR ++ L+ D + V Y Y + +
Sbjct: 123 VRNVTLPKGTYVKLQPHTTDFLDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDI 182
Query: 238 LELKPSSSVSVLETDIEVDIVSPDDMSAGTDQYTLKPLLFGKSESG-MVEEGKYVFYKFT 296
+E KP++++S++ETD EVD P D ++ T G +++ +V+E + F FT
Sbjct: 183 VETKPANAISIIETDCEVDFAPPLDYKE-PERPTAPSAAKGPAKAEEVVDEPEPKFNPFT 241
>ZFIN|ZDB-GENE-040718-150 [details] [associations]
symbol:ufd1l "ubiquitin fusion degradation 1-like"
species:7955 "Danio rerio" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042221 "response to chemical
stimulus" evidence=IDA] InterPro:IPR004854 Pfam:PF03152
ZFIN:ZDB-GENE-040718-150 GO:GO:0042221 GO:GO:0006511 EMBL:BX323451
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OMA:IRNSRPQ
EMBL:FP085395 EMBL:BC076020 EMBL:BC153586 EMBL:AY648824
IPI:IPI00489675 RefSeq:NP_001002451.1 UniGene:Dr.79033 SMR:Q6DRD5
STRING:Q6DRD5 Ensembl:ENSDART00000034968 GeneID:436724
KEGG:dre:436724 InParanoid:Q6DRD5 NextBio:20831165 Uniprot:Q6DRD5
Length = 308
Score = 276 (102.2 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 61/143 (42%), Positives = 85/143 (59%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+LS L+ P + K S+R TH GVLEF ADEGF LP + +NL + V+
Sbjct: 55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGFCYLPHWMMQNLLLEE---GGLVQ 111
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V
Sbjct: 112 VESVNLMVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171
Query: 238 LELKPSSSVSVLETDIEVDIVSP 260
+E KP +VS++E D+ VD +P
Sbjct: 172 METKPDKAVSIIECDMNVDFDAP 194
>UNIPROTKB|F1NVD8 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:AADN02034776 IPI:IPI00589702 Ensembl:ENSGALT00000034831
Uniprot:F1NVD8
Length = 307
Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 60/143 (41%), Positives = 84/143 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+LS L+ P + K S+R TH GVLEF ADEG LP + +NL + V+
Sbjct: 55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V
Sbjct: 112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRSFACLTTGDVIAINYNEKIYELRV 171
Query: 238 LELKPSSSVSVLETDIEVDIVSP 260
+E KP +VS++E D+ VD +P
Sbjct: 172 METKPDKAVSIIECDMNVDFDAP 194
>UNIPROTKB|J9NYF2 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 KO:K14016
PANTHER:PTHR12555 CTD:7353 EMBL:AAEX03014865 EMBL:AAEX03014866
RefSeq:XP_850373.3 Ensembl:ENSCAFT00000047839 GeneID:608300
KEGG:cfa:608300 Uniprot:J9NYF2
Length = 307
Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 60/143 (41%), Positives = 84/143 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+LS L+ P + K S+R TH GVLEF ADEG LP + +NL + V+
Sbjct: 55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V
Sbjct: 112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171
Query: 238 LELKPSSSVSVLETDIEVDIVSP 260
+E KP +VS++E D+ VD +P
Sbjct: 172 METKPDKAVSIIECDMNVDFDAP 194
>UNIPROTKB|Q92890 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0005102 "receptor binding"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001501 "skeletal system development"
evidence=TAS] [GO:0004843 "ubiquitin-specific protease activity"
evidence=TAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=TAS] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 GO:GO:0005829 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0001501 GO:GO:0006511 Orphanet:567
GO:GO:0004843 EMBL:AC000087 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:U64444 EMBL:AF141201 EMBL:CR456607
EMBL:AK225877 EMBL:AC000068 EMBL:BC001049 EMBL:BC005087
IPI:IPI00218292 IPI:IPI00655754 IPI:IPI00852988
RefSeq:NP_001030324.2 RefSeq:NP_005650.2 UniGene:Hs.474213 PDB:2YUJ
PDBsum:2YUJ ProteinModelPortal:Q92890 SMR:Q92890 DIP:DIP-45954N
IntAct:Q92890 MINT:MINT-2837704 STRING:Q92890 PhosphoSite:Q92890
DMDM:160332310 OGP:Q92890 PaxDb:Q92890 PRIDE:Q92890 DNASU:7353
Ensembl:ENST00000263202 Ensembl:ENST00000399523 GeneID:7353
KEGG:hsa:7353 UCSC:uc002zpm.2 CTD:7353 GeneCards:GC22M019437
HGNC:HGNC:12520 HPA:HPA030287 MIM:601754 neXtProt:NX_Q92890
PharmGKB:PA37167 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW ChiTaRS:UFD1L
EvolutionaryTrace:Q92890 GenomeRNAi:7353 NextBio:28788
ArrayExpress:Q92890 Bgee:Q92890 CleanEx:HS_UFD1L
Genevestigator:Q92890 Uniprot:Q92890
Length = 307
Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 60/143 (41%), Positives = 84/143 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+LS L+ P + K S+R TH GVLEF ADEG LP + +NL + V+
Sbjct: 55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V
Sbjct: 112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171
Query: 238 LELKPSSSVSVLETDIEVDIVSP 260
+E KP +VS++E D+ VD +P
Sbjct: 172 METKPDKAVSIIECDMNVDFDAP 194
>UNIPROTKB|F1RK61 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:CU468637 EMBL:CU618331 Ensembl:ENSSSCT00000011082
Uniprot:F1RK61
Length = 307
Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 60/143 (41%), Positives = 84/143 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+LS L+ P + K S+R TH GVLEF ADEG LP + +NL + V+
Sbjct: 55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V
Sbjct: 112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171
Query: 238 LELKPSSSVSVLETDIEVDIVSP 260
+E KP +VS++E D+ VD +P
Sbjct: 172 METKPDKAVSIIECDMNVDFDAP 194
>MGI|MGI:109353 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like"
species:10090 "Mus musculus" [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0032403 "protein complex
binding" evidence=ISO] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 MGI:MGI:109353 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 EMBL:CH466521 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW
EMBL:U64445 EMBL:AK147138 EMBL:AK169062 EMBL:BC006630
IPI:IPI00656165 RefSeq:NP_035802.3 UniGene:Mm.237594
ProteinModelPortal:P70362 SMR:P70362 STRING:P70362
PhosphoSite:P70362 REPRODUCTION-2DPAGE:P70362 PaxDb:P70362
PRIDE:P70362 Ensembl:ENSMUST00000005394 Ensembl:ENSMUST00000115578
GeneID:22230 KEGG:mmu:22230 InParanoid:Q923C4 OMA:IRNSRPQ
NextBio:302271 Bgee:P70362 CleanEx:MM_UFD1L Genevestigator:P70362
GermOnline:ENSMUSG00000005262 Uniprot:P70362
Length = 307
Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 60/143 (41%), Positives = 84/143 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+LS L+ P + K S+R TH GVLEF ADEG LP + +NL + V+
Sbjct: 55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V
Sbjct: 112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171
Query: 238 LELKPSSSVSVLETDIEVDIVSP 260
+E KP +VS++E D+ VD +P
Sbjct: 172 METKPDKAVSIIECDMNVDFDAP 194
>RGD|619822 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like (yeast)"
species:10116 "Rattus norvegicus" [GO:0005102 "receptor binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IPI] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
RGD:619822 GO:GO:0005829 GO:GO:0005634 GO:GO:0043161 EMBL:CH473999
KO:K14016 PANTHER:PTHR12555 HSSP:P53044 CTD:7353 EMBL:AF234601
EMBL:BC161818 IPI:IPI00195248 RefSeq:NP_445870.1 UniGene:Rn.11946
ProteinModelPortal:Q9ES53 SMR:Q9ES53 IntAct:Q9ES53
PhosphoSite:Q9ES53 PRIDE:Q9ES53 GeneID:84478 KEGG:rno:84478
NextBio:616986 Genevestigator:Q9ES53 Uniprot:Q9ES53
Length = 307
Score = 271 (100.5 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 60/143 (41%), Positives = 84/143 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+LS L+ P + K S+R TH GVLEF ADEG LP + +NL + V+
Sbjct: 55 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V
Sbjct: 112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171
Query: 238 LELKPSSSVSVLETDIEVDIVSP 260
+E KP +VS++E D+ VD +P
Sbjct: 172 METKPDKAVSIIECDMNVDFDAP 194
>UNIPROTKB|Q0P568 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation 1 like"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 eggNOG:COG5140 GeneTree:ENSGT00390000002408
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 CTD:7353
HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW EMBL:DAAA02045760
EMBL:BC120441 IPI:IPI00907531 RefSeq:NP_001068768.1
UniGene:Bt.11225 SMR:Q0P568 STRING:Q0P568
Ensembl:ENSBTAT00000056937 GeneID:507124 KEGG:bta:507124
OMA:AISIIEC NextBio:20867911 Uniprot:Q0P568
Length = 231
Score = 270 (100.1 bits), Expect = 4.9e-23, P = 4.9e-23
Identities = 60/143 (41%), Positives = 84/143 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+LS L+ P + K S+R TH GVLEF ADEG LP + +NL + V+
Sbjct: 55 QLSRLNITYPMLFKLTNKNSDRVTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQ 111
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V
Sbjct: 112 VESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRV 171
Query: 238 LELKPSSSVSVLETDIEVDIVSP 260
+E KP +VS++E D+ VD +P
Sbjct: 172 METKPDKAVSIIECDMNVDFDAP 194
>UNIPROTKB|A6NJ11 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 HOVERGEN:HBG001266 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:A6NJ11 SMR:A6NJ11 STRING:A6NJ11 PRIDE:A6NJ11
Ensembl:ENST00000360834 ArrayExpress:A6NJ11 Bgee:A6NJ11
Uniprot:A6NJ11
Length = 296
Score = 269 (99.8 bits), Expect = 6.4e-23, P = 6.4e-23
Identities = 56/126 (44%), Positives = 77/126 (61%)
Query: 135 KESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPE 194
K S+R TH GVLEF ADEG LP + +NL + V+V V L TY+K QP+
Sbjct: 61 KNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQ 117
Query: 195 GIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIE 254
F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V+E KP +VS++E D+
Sbjct: 118 SPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMN 177
Query: 255 VDIVSP 260
VD +P
Sbjct: 178 VDFDAP 183
>UNIPROTKB|C9IZG3 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:C9IZG3 SMR:C9IZG3 STRING:C9IZG3
Ensembl:ENST00000421968 UCSC:uc010grq.2 ArrayExpress:C9IZG3
Bgee:C9IZG3 Uniprot:C9IZG3
Length = 190
Score = 269 (99.8 bits), Expect = 6.4e-23, P = 6.4e-23
Identities = 56/126 (44%), Positives = 77/126 (61%)
Query: 135 KESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPE 194
K S+R TH GVLEF ADEG LP + +NL + V+V V L TY+K QP+
Sbjct: 61 KNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQ 117
Query: 195 GIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIE 254
F ++ N KAVLE +LR A L+ DV+ +NY E Y+L+V+E KP +VS++E D+
Sbjct: 118 SPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMN 177
Query: 255 VDIVSP 260
VD +P
Sbjct: 178 VDFDAP 183
>FB|FBgn0036136 [details] [associations]
symbol:Ufd1-like "Ubiquitin fusion-degradation 1-like"
species:7227 "Drosophila melanogaster" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP;NAS]
[GO:0006508 "proteolysis" evidence=IMP] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=NAS] InterPro:IPR004854 Pfam:PF03152 EMBL:AE014296
GO:GO:0000502 GO:GO:0006511 GO:GO:0032436 eggNOG:COG5140
GeneTree:ENSGT00390000002408 KO:K14016 PANTHER:PTHR12555
EMBL:AF228282 EMBL:AF228283 EMBL:AY060735 RefSeq:NP_524023.1
UniGene:Dm.927 ProteinModelPortal:Q9VTF9 SMR:Q9VTF9 DIP:DIP-21844N
IntAct:Q9VTF9 MINT:MINT-755529 STRING:Q9VTF9 PaxDb:Q9VTF9
PRIDE:Q9VTF9 EnsemblMetazoa:FBtr0076223 GeneID:39254
KEGG:dme:Dmel_CG6233 CTD:39254 FlyBase:FBgn0036136
InParanoid:Q9VTF9 OMA:YKCFSVS OrthoDB:EOG463XTR PhylomeDB:Q9VTF9
GenomeRNAi:39254 NextBio:812728 Bgee:Q9VTF9 GermOnline:CG6233
Uniprot:Q9VTF9
Length = 316
Score = 248 (92.4 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 54/142 (38%), Positives = 83/142 (58%)
Query: 119 LSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEV 178
L+ L+ E P + + +RS+H+GVLEF ADEG LP + NL + + +
Sbjct: 53 LTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGE---GDILNI 109
Query: 179 RYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVL 238
V LP T++K QP F ++ N KAVLE +LR A L++ DV+ + Y + Y+L VL
Sbjct: 110 ESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVL 169
Query: 239 ELKPSSSVSVLETDIEVDIVSP 260
E KP ++VS++E D+ V+ +P
Sbjct: 170 ETKPGNAVSIIECDMNVEFEAP 191
Score = 37 (18.1 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 374 GFKDMTKFQVLVTLEDDSGRKVGQEATSSSSSIEMDTVQ 412
G+KD ++ Q + + + VG E ++++I + V+
Sbjct: 193 GYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVE 231
>TAIR|locus:2120247 [details] [associations]
symbol:AT4G38930 "AT4G38930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA;ISS] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002687 GO:GO:0006511 EMBL:AL035679
EMBL:AL161594 HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555
OMA:NQTNEAS IPI:IPI00528563 PIR:T06053 RefSeq:NP_974709.1
UniGene:At.2837 UniGene:At.67000 ProteinModelPortal:Q9SVK0
SMR:Q9SVK0 PRIDE:Q9SVK0 DNASU:830048 EnsemblPlants:AT4G38930.2
GeneID:830048 KEGG:ath:AT4G38930 TAIR:At4g38930 InParanoid:Q9SVK0
PhylomeDB:Q9SVK0 ProtClustDB:CLSN2917686 ArrayExpress:Q9SVK0
Genevestigator:Q9SVK0 Uniprot:Q9SVK0
Length = 315
Score = 263 (97.6 bits), Expect = 3.0e-22, P = 3.0e-22
Identities = 57/145 (39%), Positives = 84/145 (57%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
+L+ L + P E ++ +H GVLEF A+EG + +P + +NL + V
Sbjct: 45 RLASLQIDYPMLFELRNASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQE---GDMVR 101
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
VR V LPKGTY KLQP F ++ N KA+LET+LR ++ L+ D + V Y Y + +
Sbjct: 102 VRNVTLPKGTYVKLQPHTTDFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDI 161
Query: 238 LELKPSSSVSVLETDIEVDIVSPDD 262
+E KPS+ +S++ETD EVD P D
Sbjct: 162 VEAKPSNGISIIETDCEVDFAPPLD 186
>GENEDB_PFALCIPARUM|PF14_0178 [details] [associations]
symbol:PF14_0178 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 259 (96.2 bits), Expect = 8.3e-22, P = 8.3e-22
Identities = 56/142 (39%), Positives = 85/142 (59%)
Query: 123 HQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVR 182
H P E +++ THSGVLEF +DEG +P + + L + V V V
Sbjct: 59 HISWPMLFEVSNPYTDKRTHSGVLEFISDEGTCHMPYWMMQQL---NLKEGDIVRVTSVS 115
Query: 183 LPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKP 242
LPKGT+ KL+P F EL N +AVLET+LR +ATL+ D + ++Y Y++K+++LKP
Sbjct: 116 LPKGTFVKLKPCSKDFMELSNHRAVLETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKP 175
Query: 243 SSSVSVLETDIEVDIVSPDDMS 264
+ + +++ETD+EV+ P D S
Sbjct: 176 AFACTIIETDVEVEFEEPIDHS 197
>UNIPROTKB|F1PAI5 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 PANTHER:PTHR12555
OMA:IRNSRPQ EMBL:AAEX03014865 EMBL:AAEX03014866
Ensembl:ENSCAFT00000023194 Uniprot:F1PAI5
Length = 310
Score = 259 (96.2 bits), Expect = 8.3e-22, P = 8.3e-22
Identities = 62/148 (41%), Positives = 86/148 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVW--RNLFPSDTPNNSF 175
+LS L+ P + K S+R TH GVLEF ADEG LP H W +NL +
Sbjct: 54 QLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLP-HWWMMQNLLLEE---GGL 109
Query: 176 VEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKL 235
V+V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L
Sbjct: 110 VQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYEL 169
Query: 236 KVLELKPSSSVSVLETDI---EVDIVSP 260
+V+E KP +VS++E D+ +VD +P
Sbjct: 170 RVMETKPDKAVSIIECDMNGPKVDFDAP 197
>UNIPROTKB|Q8ILR6 [details] [associations]
symbol:UFD1 "Ubiquitin fusion degradation protein UFD1,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 259 (96.2 bits), Expect = 8.3e-22, P = 8.3e-22
Identities = 56/142 (39%), Positives = 85/142 (59%)
Query: 123 HQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVR 182
H P E +++ THSGVLEF +DEG +P + + L + V V V
Sbjct: 59 HISWPMLFEVSNPYTDKRTHSGVLEFISDEGTCHMPYWMMQQL---NLKEGDIVRVTSVS 115
Query: 183 LPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKP 242
LPKGT+ KL+P F EL N +AVLET+LR +ATL+ D + ++Y Y++K+++LKP
Sbjct: 116 LPKGTFVKLKPCSKDFMELSNHRAVLETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKP 175
Query: 243 SSSVSVLETDIEVDIVSPDDMS 264
+ + +++ETD+EV+ P D S
Sbjct: 176 AFACTIIETDVEVEFEEPIDHS 197
>ASPGD|ASPL0000066677 [details] [associations]
symbol:AN10877 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR004854
Pfam:PF03152 EMBL:BN001304 GO:GO:0006511 PANTHER:PTHR12555
EnsemblFungi:CADANIAT00000493 OMA:GIREFSA Uniprot:C8VCB5
Length = 756
Score = 175 (66.7 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 73/269 (27%), Positives = 114/269 (42%)
Query: 246 VSVLETDIEVDIVS-PDDMSAGTDQYTLKPLLF------GKSESGMVEEGKYVFYKFT-- 296
+ V++TD+EVDIV+ ++ + T L G S G++E G V +
Sbjct: 214 ICVVDTDLEVDIVALTEEQARETLHKRLARASRASKTDGGTSAGGVLELGAEVTGQVLPG 273
Query: 297 --IDDDTRKKIVSGEKRAEVRVDSEIDGGDTSIYVSRHPLLFPTRHLHEWSSHDAGS--- 351
+D + RK +G E+ + E D D ++ S PL R+ H G
Sbjct: 274 QYVDYELRKW-EAGST-IEINLVGE-DDADVTLLAS--PLSARQRNRPRMDEHVFGELSS 328
Query: 352 ---KVVILSSKDKSVD-VGTYSIGVYGFKDMTKFQVLVT---LEDDSGRKVGQEATSSSS 404
K + ++ + +D I V+ F + Q L S +S S
Sbjct: 329 QTQKQISIAPTNAELDNAEALYISVHAFATADEQQASAKSYQLRLVSATSTVDHGSSESD 388
Query: 405 SIEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCD-KCG 463
+ + D V CKNC+R++ SR+ VLHE +C R++V C H R+ E ++H HC
Sbjct: 389 AHDADDVLCKNCQRWVSSRTFVLHENFCFRNNVLCTHCHEVFQKRSPEWQNHWHCPYDAS 448
Query: 464 QGLQRREMEKHMKVFHEQCSC-PCGVVLE 491
G KH +FH + SC CG E
Sbjct: 449 FGHDLASQHKHDLIFHTRRSCRACGFEAE 477
Score = 162 (62.1 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 45/130 (34%), Positives = 76/130 (58%)
Query: 136 ESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNS---FVEVRYVRLPKGTYAKLQ 192
+++R ++G+ EF+A E +GL + L S ++ V V +LPKGTY +L+
Sbjct: 99 QNSRVIYAGIREFSARENEIGLSASLREALDISQEGGDADAPIVTVHAEQLPKGTYVRLR 158
Query: 193 PEGIGFAELPNQKAVLETSLRQ-HATLSQDDVLTVNYG-ELAYKLKVLELKPSSS-VSVL 249
P G+ + + KA+LE LR + TL+ + LTV G E ++K V +++P + V+
Sbjct: 159 PLEAGY-DTDDWKALLERHLRSNYTTLTTGETLTVPRGQEESFKFLVDKVEPQGEGICVV 217
Query: 250 ETDIEVDIVS 259
+TD+EVDIV+
Sbjct: 218 DTDLEVDIVA 227
Score = 38 (18.4 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 90 SGDKIKLPPSCFTEL 104
SGD+I LP S +L
Sbjct: 26 SGDRIILPQSALEQL 40
>SGD|S000003280 [details] [associations]
symbol:UFD1 "Substrate-recruiting cofactor of the
Cdc48p-Npl4p-Ufd1p segregase" species:4932 "Saccharomyces
cerevisiae" [GO:0071712 "ER-associated misfolded protein catabolic
process" evidence=IMP] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IMP]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0031593
"polyubiquitin binding" evidence=IDA] [GO:0071629
"cytoplasm-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR004854 Pfam:PF03152
SGD:S000003280 GO:GO:0005634 EMBL:BK006941 GO:GO:0031593
GO:GO:0034098 GO:GO:0030970 GO:GO:0071629 GO:GO:0071712
GO:GO:1900182 EMBL:DQ115391 EMBL:Z72833 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 OrthoDB:EOG4BP4N3 EMBL:U22153 EMBL:U17264
EMBL:AY692806 PIR:S59814 RefSeq:NP_011562.1 PDB:1ZC1 PDBsum:1ZC1
ProteinModelPortal:P53044 SMR:P53044 DIP:DIP-1476N IntAct:P53044
MINT:MINT-393265 STRING:P53044 PaxDb:P53044 PeptideAtlas:P53044
EnsemblFungi:YGR048W GeneID:852939 KEGG:sce:YGR048W CYGD:YGR048w
OMA:RCYPIAM EvolutionaryTrace:P53044 NextBio:972678
Genevestigator:P53044 GermOnline:YGR048W Uniprot:P53044
Length = 361
Score = 249 (92.7 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 63/173 (36%), Positives = 94/173 (54%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
KLS+L+ P + E+ R TH GVLEF A+EG V LP + L P S ++
Sbjct: 57 KLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETL--GIQPG-SLLQ 113
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
+ +P G + KL+P+ + F ++ + KAVLE LR +TL+ DDV+ ++Y +K+K+
Sbjct: 114 ISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKI 173
Query: 238 LELKPSSS---VSVLETDIEVDI------VSPDDMSAGTDQYTLKPLLFGKSE 281
LE+KP SS + V+ETD+ D V PD + Q K FGK +
Sbjct: 174 LEVKPESSSKSICVIETDLVTDFAPPVGYVEPDYKALKAQQDKEKKNSFGKGQ 226
>CGD|CAL0002326 [details] [associations]
symbol:orf19.5833 species:5476 "Candida albicans" [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0071629 "cytoplasm-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IEA]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IEA] [GO:0031593 "polyubiquitin
binding" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
CGD:CAL0002326 GO:GO:0006511 EMBL:AACQ01000088 EMBL:AACQ01000087
eggNOG:COG5140 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_715308.1
RefSeq:XP_715373.1 ProteinModelPortal:Q5A0H8 SMR:Q5A0H8
STRING:Q5A0H8 GeneID:3643035 GeneID:3643074 KEGG:cal:CaO19.13255
KEGG:cal:CaO19.5833 Uniprot:Q5A0H8
Length = 363
Score = 248 (92.4 bits), Expect = 3.6e-19, P = 3.6e-19
Identities = 69/215 (32%), Positives = 114/215 (53%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
KL++LH P E +++ + THSGVLEF A+EG LP + L TP S ++
Sbjct: 60 KLTMLHIRYPMLFEIKNEQNEKLTHSGVLEFIAEEGRTYLPQWMMNTL--ELTPG-SLIK 116
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
+ L G + K++P+ + F ++ + KAVLE LR+ +TL+ +D++ VNY + Y ++V
Sbjct: 117 ITNCDLNLGKFVKIEPQSVDFLDISDPKAVLENVLRKFSTLTVNDIIEVNYNDAIYGIRV 176
Query: 238 LELKPSSS---VSVLETDIEVDI------VSPDDMSAGTDQYTLKPLLFGK--SESGMVE 286
LE+KP S+ + V+ETD+E D V P+ T + + KP+ K +G
Sbjct: 177 LEVKPDSTSKGICVVETDLETDFAPLVGYVEPE-YKPKTVEPSSKPIDPSKVNKSAGAAT 235
Query: 287 EGKYVFYKFTIDD--DTRKKIVSGEKRAEVRVDSE 319
K + Y + + T K SG+K + +D +
Sbjct: 236 MAKSINYAKLVAEAGKTTKFSGSGQKLSGKSIDMD 270
>POMBASE|SPBC16A3.09c [details] [associations]
symbol:ufd1 "Cdc48-Ufd1-Npl4 complex subunit Ufd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0033554 "cellular response to stress" evidence=IEP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=ISO]
InterPro:IPR004854 Pfam:PF03152 PomBase:SPBC16A3.09c GO:GO:0005829
GO:GO:0005634 GO:GO:0033554 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0030433 GO:GO:0034098 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:AJ005825 EMBL:AJ005824
EMBL:AF034137 PIR:T43554 PIR:T43667 RefSeq:NP_596780.1
ProteinModelPortal:O42915 SMR:O42915 STRING:O42915
EnsemblFungi:SPBC16A3.09c.1 GeneID:2539623 KEGG:spo:SPBC16A3.09c
OMA:ARRNITW OrthoDB:EOG4BP4N3 NextBio:20800779 Uniprot:O42915
Length = 342
Score = 236 (88.1 bits), Expect = 6.5e-18, P = 6.5e-18
Identities = 54/146 (36%), Positives = 85/146 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
KLS L+ P + + + + TH GVLEF A+EG V LP W S P + V
Sbjct: 67 KLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLP--YWMMTTLSLEPGD-LVR 123
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
V + +G+Y KLQP+ + F ++ + +AVLE +LR +TL++ D+ + Y + Y++KV
Sbjct: 124 VINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKV 183
Query: 238 LELKPSSS---VSVLETDIEVDIVSP 260
++++P S VSV+ETD+ VD P
Sbjct: 184 IDVQPDDSRHVVSVVETDLVVDFDPP 209
>UNIPROTKB|G4NAF1 [details] [associations]
symbol:MGG_03175 "Ubiquitin fusion degradation protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511
EMBL:CM001234 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_003716815.1
ProteinModelPortal:G4NAF1 SMR:G4NAF1 EnsemblFungi:MGG_03175T0
GeneID:2677027 KEGG:mgr:MGG_03175 Uniprot:G4NAF1
Length = 379
Score = 232 (86.7 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 53/146 (36%), Positives = 85/146 (58%)
Query: 118 KLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVE 177
K+S LH + P ME E+++ THSGVLEF A+EG LP + + L D ++
Sbjct: 52 KVSKLHVQWPLLMELINGENDKHTHSGVLEFVAEEGRAYLPQWMMQTL-QLDV--GDMIQ 108
Query: 178 VRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKV 237
++ L KLQP+ F ++ + +AVLE + R ATL++ DV + Y + Y++ V
Sbjct: 109 IKSTSLELARMVKLQPQSAKFLDISDPRAVLEKAFRNFATLTKGDVFSFEYNDDVYEMAV 168
Query: 238 LELKPSSS---VSVLETDIEVDIVSP 260
L++KP ++ VS++ETD+ VD +P
Sbjct: 169 LDVKPETTKMGVSMIETDVSVDFAAP 194
>WB|WBGene00006733 [details] [associations]
symbol:ufd-1 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA
ATPase complex" evidence=IPI] [GO:0071712 "ER-associated misfolded
protein catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0034098 GO:GO:0071712 EMBL:Z69635
PIR:T21108 RefSeq:NP_502348.1 ProteinModelPortal:Q19584 SMR:Q19584
DIP:DIP-26847N IntAct:Q19584 MINT:MINT-1079679 STRING:Q19584
PaxDb:Q19584 PRIDE:Q19584 EnsemblMetazoa:F19B6.2a GeneID:3565860
KEGG:cel:CELE_F19B6.2 UCSC:F19B6.2b CTD:3565860 WormBase:F19B6.2a
eggNOG:COG5140 GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737
InParanoid:Q19584 KO:K14016 OMA:IDKAHLE NextBio:958135
ArrayExpress:Q19584 PANTHER:PTHR12555 Uniprot:Q19584
Length = 342
Score = 213 (80.0 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 46/123 (37%), Positives = 72/123 (58%)
Query: 139 RSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGF 198
R TH GVLEF+A EG LP + + L D + + LPK T+AKL+P + F
Sbjct: 80 RVTHCGVLEFSAPEGQAILPLWMMQQLGLDD---GDTIRIESATLPKATFAKLKPMSLEF 136
Query: 199 AELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIV 258
+ N KAVLE LR++A L+++D + +Y + V++LKP++SV ++E D+ +D
Sbjct: 137 LNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFD 196
Query: 259 SPD 261
P+
Sbjct: 197 PPE 199
>UNIPROTKB|C9JNP9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01011883
ProteinModelPortal:C9JNP9 SMR:C9JNP9 STRING:C9JNP9
Ensembl:ENST00000447868 ArrayExpress:C9JNP9 Bgee:C9JNP9
Uniprot:C9JNP9
Length = 159
Score = 197 (74.4 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 38/85 (44%), Positives = 55/85 (64%)
Query: 176 VEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKL 235
V+V V L TY+K QP+ F ++ N KAVLE +LR A L+ DV+ +NY E Y+L
Sbjct: 14 VQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYEL 73
Query: 236 KVLELKPSSSVSVLETDIEVDIVSP 260
+V+E KP +VS++E D+ VD +P
Sbjct: 74 RVMETKPDKAVSIIECDMNVDFDAP 98
>UNIPROTKB|C9J6N9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 HOGENOM:HOG000212737 PANTHER:PTHR12555
EMBL:AC000068 HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01010945
ProteinModelPortal:C9J6N9 SMR:C9J6N9 STRING:C9J6N9
Ensembl:ENST00000494054 ArrayExpress:C9J6N9 Bgee:C9J6N9
Uniprot:C9J6N9
Length = 136
Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 44/117 (37%), Positives = 57/117 (48%)
Query: 91 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
G KI +PPS +LS P+ FKL+ K S+R TH GVLEF A
Sbjct: 38 GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 82
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAV 207
DEG LP + +NL + V+V V L TY+K QP+ F ++ N KAV
Sbjct: 83 DEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAV 136
>UNIPROTKB|C9J7C8 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00945833
ProteinModelPortal:C9J7C8 SMR:C9J7C8 STRING:C9J7C8
Ensembl:ENST00000474226 ArrayExpress:C9J7C8 Bgee:C9J7C8
Uniprot:C9J7C8
Length = 69
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/64 (43%), Positives = 35/64 (54%)
Query: 135 KESNRSTHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPE 194
K S+R TH GVLEF ADEG LP + +NL + V+V V L TY+K QP+
Sbjct: 8 KNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQ 64
Query: 195 GIGF 198
F
Sbjct: 65 SPDF 68
>UNIPROTKB|I3L3D9 [details] [associations]
symbol:XAF1 "XIAP-associated factor 1" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001293 PROSITE:PS50145 GO:GO:0008270 HGNC:HGNC:30932
ChiTaRS:XAF1 EMBL:AC034305 Ensembl:ENST00000574394 Bgee:I3L3D9
Uniprot:I3L3D9
Length = 133
Score = 114 (45.2 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 406 IEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEAR---DH--VHCD 460
+E D C+NCKR + S + LHEAYC R V C + T E +H V C
Sbjct: 1 MEGDFSVCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCT 60
Query: 461 KCGQGLQRREMEKH 474
C Q +Q+ +E H
Sbjct: 61 MCQQSMQKSSLEFH 74
>UNIPROTKB|C9J7Z8 [details] [associations]
symbol:XAF1 "XIAP-associated factor 1" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001293 PROSITE:PS50145 GO:GO:0008270 HGNC:HGNC:30932
ChiTaRS:XAF1 EMBL:AC034305 IPI:IPI00952715 SMR:C9J7Z8 STRING:C9J7Z8
Ensembl:ENST00000438512 Ensembl:ENST00000576724 UCSC:uc010clr.1
HOGENOM:HOG000203872 Uniprot:C9J7Z8
Length = 164
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 406 IEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEAR---DH--VHCD 460
+E D C+NCKR + S + LHEAYC R V C + T E +H V C
Sbjct: 1 MEGDFSVCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCT 60
Query: 461 KCGQGLQRREMEKH 474
C Q +Q+ +E H
Sbjct: 61 MCQQSMQKSSLEFH 74
>UNIPROTKB|F8VVF3 [details] [associations]
symbol:TRAFD1 "TRAF-type zinc finger domain-containing
protein 1" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0034097 "response to cytokine stimulus" evidence=IEA]
[GO:0045824 "negative regulation of innate immune response"
evidence=IEA] InterPro:IPR015880 SMART:SM00355 GO:GO:0008270
GO:GO:0034097 GO:GO:0005622 GO:GO:0045824 EMBL:AC073575
HGNC:HGNC:24808 ChiTaRS:TRAFD1 IPI:IPI01021568
ProteinModelPortal:F8VVF3 SMR:F8VVF3 Ensembl:ENST00000549358
ArrayExpress:F8VVF3 Bgee:F8VVF3 Uniprot:F8VVF3
Length = 135
Score = 103 (41.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 407 EMDTVQCKNCKRFIPSRSIVLHEAYCSRH---SVACQHAGCGMVLRTEEARDH--VHCDK 461
+ +T C NCK+ IP + +HE +C R+ C+ + T A +H V C K
Sbjct: 7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-K 65
Query: 462 CGQGLQRREMEKHMKVFHEQCSCP 485
C + L++R ++KH E+ CP
Sbjct: 66 CNKKLEKRLLKKH-----EETECP 84
>UNIPROTKB|F8VWK2 [details] [associations]
symbol:TRAFD1 "TRAF-type zinc finger domain-containing
protein 1" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR015880 SMART:SM00355 GO:GO:0008270 GO:GO:0005622
EMBL:AC073575 HGNC:HGNC:24808 ChiTaRS:TRAFD1 IPI:IPI01021369
ProteinModelPortal:F8VWK2 SMR:F8VWK2 Ensembl:ENST00000547063
ArrayExpress:F8VWK2 Bgee:F8VWK2 Uniprot:F8VWK2
Length = 94
Score = 98 (39.6 bits), Expect = 0.00030, P = 0.00030
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 407 EMDTVQCKNCKRFIPSRSIVLHEAYCSRH---SVACQHAGCGMVLRTEEARDH--VHCDK 461
+ +T C NCK+ IP + +HE +C R+ C+ + T A +H V C K
Sbjct: 7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-K 65
Query: 462 CGQGLQRREMEKH 474
C + L++R ++KH
Sbjct: 66 CNKKLEKRLLKKH 78
>UNIPROTKB|Q6GPH4 [details] [associations]
symbol:XAF1 "XIAP-associated factor 1" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005829
"cytosol" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0060337 "type I interferon-mediated
signaling pathway" evidence=TAS] [GO:0035456 "response to
interferon-beta" evidence=IDA] InterPro:IPR001293 PROSITE:PS50145
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 Reactome:REACT_6900
GO:GO:0006915 EMBL:CH471108 GO:GO:0060337 GO:GO:0046872
GO:GO:0008270 GO:GO:0035456 CTD:54739 eggNOG:NOG87143
HOVERGEN:HBG108681 EMBL:X99699 EMBL:EF028165 EMBL:EF028166
EMBL:AK290276 EMBL:AK292710 EMBL:AK292848 EMBL:BC032776
EMBL:BC073156 EMBL:BX649188 IPI:IPI00013986 IPI:IPI00395806
IPI:IPI00788966 IPI:IPI00796968 IPI:IPI00889533 IPI:IPI00889535
IPI:IPI00889586 RefSeq:NP_059993.2 RefSeq:NP_954590.1
UniGene:Hs.441975 ProteinModelPortal:Q6GPH4 SMR:Q6GPH4
IntAct:Q6GPH4 STRING:Q6GPH4 DMDM:74736479 PRIDE:Q6GPH4
Ensembl:ENST00000346752 Ensembl:ENST00000361842
Ensembl:ENST00000571673 Ensembl:ENST00000574962 GeneID:54739
KEGG:hsa:54739 UCSC:uc002gdm.1 UCSC:uc002gdo.3 UCSC:uc002gdp.3
GeneCards:GC17P006659 HGNC:HGNC:30932 MIM:606717 neXtProt:NX_Q6GPH4
PharmGKB:PA162409299 OMA:CAMCQQS ChiTaRS:XAF1 GenomeRNAi:54739
NextBio:57333 ArrayExpress:Q6GPH4 Bgee:Q6GPH4 CleanEx:HS_XAF1
Genevestigator:Q6GPH4 Uniprot:Q6GPH4
Length = 301
Score = 114 (45.2 bits), Expect = 0.00081, P = 0.00081
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 406 IEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEAR---DH--VHCD 460
+E D C+NCKR + S + LHEAYC R V C + T E +H V C
Sbjct: 1 MEGDFSVCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCT 60
Query: 461 KCGQGLQRREMEKH 474
C Q +Q+ +E H
Sbjct: 61 MCQQSMQKSSLEFH 74
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 502 457 0.00094 118 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 610 (65 KB)
Total size of DFA: 280 KB (2147 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.45u 0.10s 40.55t Elapsed: 00:00:02
Total cpu time: 40.46u 0.10s 40.56t Elapsed: 00:00:02
Start: Sat May 11 08:26:25 2013 End: Sat May 11 08:26:27 2013