BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010753
(502 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55BK0|UFD1_DICDI Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium
discoideum GN=ufd1 PE=3 SV=1
Length = 330
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 101/183 (55%), Gaps = 24/183 (13%)
Query: 80 HTLEALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNR 139
H+LE SG KI LPPS LS +L++ + P E S +
Sbjct: 42 HSLE------SGGKILLPPSALNALS------------RLNIQY---PMLFEISNPISGK 80
Query: 140 STHSGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFA 199
+H GVLEF A+EG LP + +NL F++++ L KGT+ K+QP F
Sbjct: 81 KSHCGVLEFIAEEGICYLPLWMMQNL---QLKEGEFIDIKNATLAKGTFVKIQPRTSNFI 137
Query: 200 ELPNQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVS 259
++ N KAVLE SLR+ ATL++DD + ++Y Y LKV+ELKP++++S++E D+ VD
Sbjct: 138 DISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAP 197
Query: 260 PDD 262
P D
Sbjct: 198 PMD 200
>sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens
GN=UFD1L PE=1 SV=3
Length = 307
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 91 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
G KI +PPS +LS P+ FKL+ K S+R TH GVLEF A
Sbjct: 43 GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 87
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
DEG LP + +NL + V+V V L TY+K QP+ F ++ N KAVLE
Sbjct: 88 DEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 144
Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP 260
+LR A L+ DV+ +NY E Y+L+V+E KP +VS++E D+ VD +P
Sbjct: 145 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAP 194
>sp|Q9ES53|UFD1_RAT Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus
GN=Ufd1l PE=1 SV=1
Length = 307
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 91 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
G KI +PPS +LS P+ FKL+ K S+R TH GVLEF A
Sbjct: 43 GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 87
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
DEG LP + +NL + V+V V L TY+K QP+ F ++ N KAVLE
Sbjct: 88 DEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 144
Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP 260
+LR A L+ DV+ +NY E Y+L+V+E KP +VS++E D+ VD +P
Sbjct: 145 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAP 194
>sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus
GN=Ufd1l PE=1 SV=2
Length = 307
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 91 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
G KI +PPS +LS P+ FKL+ K S+R TH GVLEF A
Sbjct: 43 GGKIIMPPSALDQLSRLNI--TYPMLFKLT-------------NKNSDRMTHCGVLEFVA 87
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
DEG LP + +NL + V+V V L TY+K QP+ F ++ N KAVLE
Sbjct: 88 DEGICYLPHWMMQNLLLEE---GGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLEN 144
Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP 260
+LR A L+ DV+ +NY E Y+L+V+E KP +VS++E D+ VD +P
Sbjct: 145 ALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAP 194
>sp|Q9VTF9|UFD1_DROME Ubiquitin fusion degradation protein 1 homolog OS=Drosophila
melanogaster GN=Ufd1-like PE=2 SV=1
Length = 316
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 91 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
G KI +PPS L+ + P+ FKL+ + + +RS+H+GVLEF A
Sbjct: 40 GGKIIMPPSALDTLTRLNV--EYPMLFKLTNVKK-------------SRSSHAGVLEFVA 84
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
DEG LP + NL + + + V LP T++K QP F ++ N KAVLE
Sbjct: 85 DEGKCYLPHWMMENLLLGE---GDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLEN 141
Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSP 260
+LR A L++ DV+ + Y + Y+L VLE KP ++VS++E D+ V+ +P
Sbjct: 142 ALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAP 191
>sp|P53044|UFD1_YEAST Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1
Length = 361
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 21/173 (12%)
Query: 91 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
G KI LPPS ++LS + P+ FKL+ E+ R TH GVLEF A
Sbjct: 45 GGKIFLPPSALSKLSMLNI--RYPMLFKLTA-------------NETGRVTHGGVLEFIA 89
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
+EG V LP + L S +++ +P G + KL+P+ + F ++ + KAVLE
Sbjct: 90 EEGRVYLPQWMMETL---GIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLEN 146
Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKP---SSSVSVLETDIEVDIVSP 260
LR +TL+ DDV+ ++Y +K+K+LE+KP S S+ V+ETD+ D P
Sbjct: 147 VLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPP 199
>sp|O42915|UFD1_SCHPO Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4
Length = 342
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 21/181 (11%)
Query: 83 EALPFQGSGDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTH 142
E P G K+ LPPS KLS L+ P + + + + TH
Sbjct: 47 EERPNVNYGGKVILPPSALE---------------KLSRLNVSYPMLFDFENEAAEKKTH 91
Query: 143 SGVLEFTADEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELP 202
GVLEF A+EG V LP W S P + V V + +G+Y KLQP+ + F ++
Sbjct: 92 GGVLEFIAEEGRVYLP--YWMMTTLSLEPGD-LVRVINTDIAQGSYVKLQPQSVNFLDIT 148
Query: 203 NQKAVLETSLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSS---VSVLETDIEVDIVS 259
+ +AVLE +LR +TL++ D+ + Y + Y++KV++++P S VSV+ETD+ VD
Sbjct: 149 DHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDP 208
Query: 260 P 260
P
Sbjct: 209 P 209
>sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis
elegans GN=ufd-1 PE=2 SV=1
Length = 342
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 18/171 (10%)
Query: 91 GDKIKLPPSCFTELSGQGAFDKGPLHFKLSVLHQEGPSNMEDGEKESNRSTHSGVLEFTA 150
G KI LP S L P+ FKL+ NM R TH GVLEF+A
Sbjct: 47 GGKILLPSSALNLLMQYNI--PMPMLFKLT--------NMA-----VQRVTHCGVLEFSA 91
Query: 151 DEGFVGLPPHVWRNLFPSDTPNNSFVEVRYVRLPKGTYAKLQPEGIGFAELPNQKAVLET 210
EG LP + + L D + + LPK T+AKL+P + F + N KAVLE
Sbjct: 92 PEGQAILPLWMMQQLGLDD---GDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEV 148
Query: 211 SLRQHATLSQDDVLTVNYGELAYKLKVLELKPSSSVSVLETDIEVDIVSPD 261
LR++A L+++D + +Y + V++LKP++SV ++E D+ +D P+
Sbjct: 149 ELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPE 199
>sp|Q58D05|TRAD1_BOVIN TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus
GN=TRAFD1 PE=2 SV=1
Length = 580
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 407 EMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVAC-----QHAGCGMVLRTEEARDHVHCDK 461
+ DT C NCK+ IP + +HE +C R+ C C M V C K
Sbjct: 7 DQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTC-K 65
Query: 462 CGQGLQRREMEKHMKVFHEQCSCPCGVVL 490
C + L++R+++K HE+ CP + L
Sbjct: 66 CNKKLEKRQLKK-----HEETECPLRLAL 89
>sp|Q6GPH4|XAF1_HUMAN XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1
Length = 301
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 406 IEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDH-------VH 458
+E D C+NCKR + S + LHEAYC R V C C + E +H V
Sbjct: 1 MEGDFSVCRNCKRHVVSANFTLHEAYCLRFLVLC--PECEEPVPKETMEEHCKLEHQQVG 58
Query: 459 CDKCGQGLQRREMEKH 474
C C Q +Q+ +E H
Sbjct: 59 CTMCQQSMQKSSLEFH 74
>sp|O14545|TRAD1_HUMAN TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens
GN=TRAFD1 PE=1 SV=1
Length = 582
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 407 EMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGL 466
+ +T C NCK+ IP + +HE +C R+ GM C C +
Sbjct: 7 DQETRLCDNCKKEIPVFNFTIHEIHCQRN--------IGM------------CPTCKEPF 46
Query: 467 QRREMEKHMKVFHEQCSCPCG 487
+ +ME HM H Q +C C
Sbjct: 47 PKSDMETHMAAEHCQVTCKCN 67
>sp|A2SRE2|SYM_METLZ Methionine--tRNA ligase OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=metG PE=3 SV=1
Length = 673
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 413 CKNCKRFIPSRSIVLHEAYCSRHSVACQ-HAGCGMVLRTEEARDHVHCDKCGQGLQRREM 471
C CKRF+P R + YC +H+ + +GCG L E D V C CG + RE
Sbjct: 128 CPKCKRFLPDRYVEGTCPYCGKHARGDECDSGCGRHLEPGEILDPV-CATCGTKAELRE- 185
Query: 472 EKH 474
+KH
Sbjct: 186 QKH 188
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 39.7 bits (91), Expect = 0.060, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Query: 6 RRAREKLEKEQK-ERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLKAD 63
R+ +E+L+KE+ +R+E+ RL+ E E K +E+ + +R+ IE A+R + I ++L++D
Sbjct: 2827 RQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKIELAEREQH---IKSKLESD 2882
Score = 36.2 bits (82), Expect = 0.60, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 6 RRAREKLEKEQK-ERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRL 53
R+ +E+L+KE+ +R+E+ RL+ E E K +E+ + +RE E Q+ L
Sbjct: 2777 RQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEEL 2825
Score = 34.7 bits (78), Expect = 1.9, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 6 RRAREKLEKEQKE----RKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLD-AIDAQL 60
R REK E+ QKE R+E+ RL+ E K +E+ + Q+E Q RL+ QL
Sbjct: 2760 RLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQL 2819
Query: 61 KADQEMQ 67
+ ++E++
Sbjct: 2820 QKEEELK 2826
Score = 33.1 bits (74), Expect = 4.6, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 6 RRAREKLEKEQKE----RKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQLK 61
R REK E+ QKE R+E+ RL+ E K +E+ + Q+E Q RL+ +L
Sbjct: 2810 RLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKIELA 2869
Query: 62 ADQEMQESLL 71
++ +S L
Sbjct: 2870 EREQHIKSKL 2879
Score = 33.1 bits (74), Expect = 5.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 6 RRAREKLEKEQK---------ERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAI 56
R+ +E+L+KE++ ER+++ +L+ E E K +E+ + Q+E Q RL
Sbjct: 2741 RQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKE 2800
Query: 57 DAQLKADQEMQE 68
+ + +QE E
Sbjct: 2801 EELKRQEQERLE 2812
Score = 33.1 bits (74), Expect = 5.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 6 RRAREKLEKEQK---------ERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAI 56
R+ +E+L+KE++ ER+++ +L+ E E K +E+ + Q+E Q RL
Sbjct: 2791 RQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKE 2850
Query: 57 DAQLKADQEMQE 68
+ + +QE E
Sbjct: 2851 EELKRQEQERLE 2862
>sp|Q4R970|TRAD1_MACFA TRAF-type zinc finger domain-containing protein 1 OS=Macaca
fascicularis GN=TRAFD1 PE=2 SV=1
Length = 582
Score = 39.3 bits (90), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 407 EMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGL 466
+ +T C NCK+ IP + +HE +C R+ GM C C +
Sbjct: 7 DQETRLCDNCKKEIPVFNFTIHEIHCQRN--------IGM------------CPICKEPF 46
Query: 467 QRREMEKHMKVFHEQCSCPCG 487
+ +ME HM H Q +C C
Sbjct: 47 PKSDMETHMAAEHCQVTCKCN 67
>sp|Q5NBU8|XAF1_MOUSE XIAP-associated factor 1 OS=Mus musculus GN=Xaf1 PE=2 SV=3
Length = 273
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 20/76 (26%)
Query: 406 IEMDTVQCKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQG 465
+E D C+NCKR + S +LHEA+C R V C +C +
Sbjct: 1 MEADFQVCRNCKRNVASLHFMLHEAHCLRFIVL--------------------CPECEEP 40
Query: 466 LQRREMEKHMKVFHEQ 481
+ +M++HM+V H+Q
Sbjct: 41 IPESKMKEHMEVVHQQ 56
>sp|Q11KH6|ATPF2_MESSB ATP synthase subunit b 2 OS=Mesorhizobium sp. (strain BNC1)
GN=atpF2 PE=3 SV=1
Length = 159
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 40/64 (62%)
Query: 1 MDFELRRAREKLEKEQKERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAIDAQL 60
+D R + +LE+ ++ R+E +L E ++K +E ++ +E ++AA+R +L DA++
Sbjct: 31 LDARAERIKNELEEARRLREEAQQLLAEYQRKRREAEQEAKELVDAAKREAKLIVSDAKV 90
Query: 61 KADQ 64
K ++
Sbjct: 91 KTEE 94
>sp|Q3UDK1|TRAD1_MOUSE TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus
GN=Trafd1 PE=1 SV=1
Length = 580
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 24/93 (25%)
Query: 413 CKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREME 472
C NCK+ IP + +HE +C R+ C C + + +M+
Sbjct: 13 CDNCKKEIPVFNFTIHEIHCQRNIGV--------------------CPVCKEPFPKSDMD 52
Query: 473 KHMKVFHEQCSCPCGVVLENAAMVSY----CPL 501
HM H Q +C C LE + + CPL
Sbjct: 53 IHMAAEHCQVTCKCNKKLEKRQLKQHAETECPL 85
>sp|Q99MM4|TRAD1_RAT TRAF-type zinc finger domain-containing protein 1 OS=Rattus
norvegicus GN=Trafd1 PE=2 SV=2
Length = 576
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 413 CKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHV---HCD---KCGQGL 466
C NCK+ IP + +HE +C R+ C C + HV HC KC + L
Sbjct: 13 CDNCKKEIPVFNFTIHEIHCQRNIGVC--PVCKEPFPKSDMDIHVATEHCQVTCKCNKKL 70
Query: 467 QRREMEKHMKV 477
++R++++H++
Sbjct: 71 EKRQLKQHVET 81
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 34.7 bits (78), Expect = 1.6, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
Query: 6 RRAREKLEKEQK---------ERKERARLKLEREKKAKEEAKKQREAIEAAQRSRRLDAI 56
R+ +E+L+KE++ ER+++ +L+ E E + KE+ K+Q+ I+ + ++ + I
Sbjct: 2665 RQEQERLQKEEELKRQEQERLEREKQEQLQKEEELRKKEQEKQQQRNIQELEEQKKPEII 2724
Query: 57 -DAQLKADQEMQES 69
+A +K D+ ++ S
Sbjct: 2725 NEALVKGDKILEGS 2738
>sp|Q58DH1|XAF1_BOVIN XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=2 SV=2
Length = 297
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 20/72 (27%)
Query: 413 CKNCKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDHVHCDKCGQGLQRREME 472
C+NCKR + S + LHEA+C + +VL C +C + + + EME
Sbjct: 8 CRNCKRRVASNHLGLHEAHCLMY----------LVL----------CPECKEPVLQHEME 47
Query: 473 KHMKVFHEQCSC 484
+H + H+Q C
Sbjct: 48 EHCQGGHQQVGC 59
>sp|P11467|DG17_DICDI RING finger protein DG17 OS=Dictyostelium discoideum GN=zfaA PE=2
SV=2
Length = 460
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 416 CKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDH--------VHCDKCGQ-GL 466
CK I I H C V C GC +LR H V CD C + +
Sbjct: 130 CKEKIEVDQIDSHLINCQYKFVTCSFKGCEKILRMNSLESHQNECGFKLVTCDFCKRDDI 189
Query: 467 QRREMEKHMK---VFHEQCSCPCGVVLENAAMVSY 498
+++E+E H K + CS C V +E +++ +
Sbjct: 190 KKKELETHYKTCPMVPIDCSQGCSVKIERKSIIDH 224
>sp|Q54FG0|Y0883_DICDI TNF receptor-associated factor family protein DDB_G0290883
OS=Dictyostelium discoideum GN=DDB_G0290883 PE=3 SV=1
Length = 460
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 416 CKRFIPSRSIVLHEAYCSRHSVACQHAGCGMVLRTEEARDH--------VHCDKCGQ-GL 466
CK I I H C V C GC +LR H V CD C + +
Sbjct: 130 CKEKIEVDQIDSHLINCQYKFVTCSFKGCEKILRMNSLESHQNECGFKLVICDFCKRDDI 189
Query: 467 QRREMEKHMK---VFHEQCSCPCGVVLENAAMVSY 498
+++E+E H K + CS C V +E +++ +
Sbjct: 190 KKKELETHYKTCPMVPIDCSQGCSVKIERKSIIDH 224
>sp|Q7S8V3|NST1_NEUCR Stress response protein nst-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nst-1 PE=3 SV=1
Length = 1350
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 3/38 (7%)
Query: 13 EKEQKERKERARLKLEREKKAKEEAK-KQREAIEAAQR 49
E+E+ ERK R LK EREKKA+EEA+ K++EA E +R
Sbjct: 654 EREENERKAR-ELK-EREKKAREEARLKEKEAREQKER 689
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,046,620
Number of Sequences: 539616
Number of extensions: 8266205
Number of successful extensions: 61946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 522
Number of HSP's that attempted gapping in prelim test: 48779
Number of HSP's gapped (non-prelim): 9413
length of query: 502
length of database: 191,569,459
effective HSP length: 122
effective length of query: 380
effective length of database: 125,736,307
effective search space: 47779796660
effective search space used: 47779796660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)