BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010754
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 21/251 (8%)
Query: 218 VCACAWSPX-XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLV-LKH---VKGRTNE 272
+ + W+P +S AR+ I + T G + L ++ L+H + + +
Sbjct: 48 IVSSTWNPLDESILAYGEKNSVARLARIVE-TDQEGKKYWKLTIIAELRHPFALSASSGK 106
Query: 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
+ VT L W+ +G + TG +G+ R+W+ G L L+ H+ PI S+KWNK G ++++
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 333 GSCDKTAIVWDVKTEEWKQQFEF------------HSGP---TLDVDWRNNVSFATSSTD 377
+ I+W+V + Q FE HSG +DV+W ++ F
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437
I+V +I E P GH G ++ ++++ T LL S SDD T +IW+ +
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 438 EHSKEIYTIRW 448
HS+ I + W
Sbjct: 287 GHSQSIVSASW 297
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 311 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370
L H GPI L++N LL+ S D T +W + F HS + W +
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 371 FATSSTDNMIYVCKIGEN 388
+ S D + + + +N
Sbjct: 303 VISCSMDGSVRLWSLKQN 320
>pdb|2XTC|A Chain A, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTC|B Chain B, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|A Chain A, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|B Chain B, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|C Chain C, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|D Chain D, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|E Chain E, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|F Chain F, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|G Chain G, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|H Chain H, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|I Chain I, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|J Chain J, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|K Chain K, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|L Chain L, Structure Of The Tbl1 Tetramerisation Domain
Length = 90
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 55/73 (75%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SITS+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61
Query: 63 MEANLSNSDVDMD 75
E +++ D
Sbjct: 62 AEISINEDGTVFD 74
>pdb|2XTD|A Chain A, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTD|B Chain B, Structure Of The Tbl1 Tetramerisation Domain
Length = 71
Score = 89.7 bits (221), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/66 (60%), Positives = 54/66 (81%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SITS+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61
Query: 63 MEANLS 68
E +++
Sbjct: 62 AEISIN 67
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 23/269 (8%)
Query: 187 PEPMDIATTSASESFEIPNSDVTILE---GHTSEVCACAWSPXXXXXXXXXXDSTARIWT 243
P+ IA+ S ++ ++ N + +L+ GH+S V A+SP D T ++W
Sbjct: 67 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
+NG L + H S V + ++ +G +A+ S D ++W+
Sbjct: 127 ----------RNGQLLQTLTGH--------SSSVWGVAFSPDGQTIASASDDKTVKLWNR 168
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
NG L TL+ H ++ + ++ G + + S DKT +W+ + + Q HS V
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 227
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
+ + S++D+ + ++T GH VN V + P G +AS SDD T K
Sbjct: 228 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287
Query: 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
+WN + + + L HS ++ + +SP G
Sbjct: 288 LWN-RNGQLLQTLTGHSSSVWGVAFSPDG 315
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 23/267 (8%)
Query: 187 PEPMDIATTSASESFEIPNSDVTILE---GHTSEVCACAWSPXXXXXXXXXXDSTARIWT 243
P+ IA+ S ++ ++ N + +L+ GH+S V A+SP D T ++W
Sbjct: 190 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
+NG L + H S V + + +G +A+ S D ++W+
Sbjct: 250 ----------RNGQLLQTLTGH--------SSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
NG L TL+ H ++ + ++ G + + S DKT +W+ + + Q HS V
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGV 350
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
+ + S++D+ + ++T GH V V + P G +AS SDD T K
Sbjct: 351 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410
Query: 424 IWNMKQDKYVHDLREHSKEIYTIRWSP 450
+WN + + + L HS ++ + +SP
Sbjct: 411 LWN-RNGQLLQTLTGHSSSVWGVAFSP 436
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 23/269 (8%)
Query: 187 PEPMDIATTSASESFEIPNSDVTILE---GHTSEVCACAWSPXXXXXXXXXXDSTARIWT 243
P+ IA+ S ++ ++ N + +L+ GH+S V A+SP D T ++W
Sbjct: 26 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
+NG L + H S V + ++ +G +A+ S D ++W+
Sbjct: 86 ----------RNGQLLQTLTGH--------SSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
NG L TL+ H ++ + ++ G + + S DKT +W+ + + Q HS V
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
+ + S++D+ + ++T GH V V + P G +AS SDD T K
Sbjct: 187 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
+WN + + + L HS + + + P G
Sbjct: 247 LWN-RNGQLLQTLTGHSSSVNGVAFRPDG 274
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 23/269 (8%)
Query: 187 PEPMDIATTSASESFEIPNSD---VTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWT 243
P+ IA+ S ++ ++ N + + L GH+S V A+SP D T ++W
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
+NG L + H S V + ++ +G +A+ S D ++W+
Sbjct: 373 ----------RNGQLLQTLTGH--------SSSVRGVAFSPDGQTIASASDDKTVKLWNR 414
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
NG L TL+ H ++ + ++ + + S DKT +W+ + + Q HS V
Sbjct: 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 473
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
+ + S++D+ + ++T GH V V + P G +AS SDD T K
Sbjct: 474 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533
Query: 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
+WN + + + L HS ++ + +SP G
Sbjct: 534 LWN-RNGQLLQTLTGHSSSVWGVAFSPDG 561
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 20/242 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
LE H+S V A+SP D T ++W +NG L + H
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN----------RNGQLLQTLTGH----- 56
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL 330
S V + ++ +G +A+ S D ++W+ NG L TL+ H + + ++ G +
Sbjct: 57 ---SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 331 LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 390
+ S DKT +W+ + + Q HS V + + S++D+ +
Sbjct: 114 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 172
Query: 391 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
++T GH V V + P G +AS SDD T K+WN + + + L HS + + +SP
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 451 TG 452
G
Sbjct: 232 DG 233
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 2/186 (1%)
Query: 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK 326
+ R S V + ++ +G +A+ S D ++W+ NG L TL+ H ++ + ++
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 386
G + + S DKT +W+ + + Q HS V + + S++D+
Sbjct: 69 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ ++T GH V V + P G +AS SDD T K+WN + + + L HS ++ +
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 447 RWSPTG 452
+SP G
Sbjct: 187 AFSPDG 192
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 22/243 (9%)
Query: 187 PEPMDIATTSASESFEIPNSDVTILE---GHTSEVCACAWSPXXXXXXXXXXDSTARIWT 243
P+ IA+ S ++ ++ N + +L+ GH+S V A+SP D T ++W
Sbjct: 354 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
+NG L + H S V + ++ + +A+ S D ++W+
Sbjct: 414 ----------RNGQLLQTLTGH--------SSSVWGVAFSPDDQTIASASDDKTVKLWNR 455
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
NG L TL+ H + + ++ G + + S DKT +W+ + + Q HS V
Sbjct: 456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 514
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
+ + S++D+ + ++T GH V V + P G +AS S D T K
Sbjct: 515 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574
Query: 424 IWN 426
+WN
Sbjct: 575 LWN 577
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 117/283 (41%), Gaps = 28/283 (9%)
Query: 168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTI-LEGHTSEVCACAWSPX 226
EEK KPE P P AT S + PN + L GHT V + +SP
Sbjct: 4 EEK---KPETEA---ARAQPTPSSSATQSKPTPVK-PNYALKFTLAGHTKAVSSVKFSPN 56
Query: 227 XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286
D +IW GA +G + H G ++ + W+ +
Sbjct: 57 GEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG--------ISDVAWSSDS 99
Query: 287 TLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345
LL + S D +IW ++G TL H +F +N + + +++GS D++ +WDVK
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 346 TEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNC 403
T + + HS P V + R+ +SS D + + + +KT V+
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 404 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 129
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 130 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 246 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 305
Query: 445 TIRWSPT 451
+ PT
Sbjct: 306 STACHPT 312
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 171
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 172 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 288 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 184
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 117/283 (41%), Gaps = 28/283 (9%)
Query: 168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTI-LEGHTSEVCACAWSPX 226
EEK KPE P P AT S + PN + L GHT V + +SP
Sbjct: 6 EEK---KPETEA---ARAQPTPSSSATQSKPTPVK-PNYALKFTLAGHTKAVSSVKFSPN 58
Query: 227 XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286
D +IW GA +G + H G ++ + W+ +
Sbjct: 59 GEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG--------ISDVAWSSDS 101
Query: 287 TLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345
LL + S D +IW ++G TL H +F +N + + +++GS D++ +WDVK
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 346 TEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNC 403
T + + HS P V + R+ +SS D + + + +KT V+
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Query: 404 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 131
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 132 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 248 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 307
Query: 445 TIRWSPT 451
+ PT
Sbjct: 308 STACHPT 314
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 173
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 174 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 290 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 186
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 110
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 111 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 445 TIRWSPT 451
+ PT
Sbjct: 287 STACHPT 293
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 21/250 (8%)
Query: 201 FEIPNSDVTI-LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLN 259
F PN + L GHT V + +SP D +IW GA +G
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFE 61
Query: 260 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPI 318
+ H G ++ + W+ + LL + S D +IW ++G TL H +
Sbjct: 62 KTISGHKLG--------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTD 377
F +N + + +++GS D++ +WDVKT + + HS P V + R+ +SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 378 NMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436
+ + + +KT V+ VK+ P G + + + D T K+W+ + K +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 437 REHSKEIYTI 446
H E Y I
Sbjct: 234 TGHKNEKYCI 243
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 152
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 153 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K++
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 110
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 111 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 445 TIRWSPT 451
+ PT
Sbjct: 287 STACHPT 293
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 21/250 (8%)
Query: 201 FEIPNSDVTI-LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLN 259
F PN + L GHT V + +SP D +IW GA +G
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFE 61
Query: 260 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPI 318
+ H G ++ + W+ + LL + S D +IW ++G TL H +
Sbjct: 62 KTISGHKLG--------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTD 377
F +N + + +++GS D++ +WDVKT + + HS P V + R+ +SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 378 NMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436
+ + + +KT V+ VK+ P G + + + D T K+W+ + K +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 437 REHSKEIYTI 446
H E Y I
Sbjct: 234 TGHKNEKYCI 243
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 152
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 153 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K++
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 113
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 114 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Query: 445 TIRWSPT 451
+ PT
Sbjct: 290 STACHPT 296
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 73
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 74 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 155
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 156 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 124
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 125 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 180
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 241 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 300
Query: 445 TIRWSPT 451
+ PT
Sbjct: 301 STACHPT 307
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 84
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 85 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 138
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 166
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 167 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 283 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 179
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 113
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 114 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Query: 445 TIRWSPT 451
+ PT
Sbjct: 290 STACHPT 296
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 21/262 (8%)
Query: 189 PMDIATTSASESFEIPNSDVTI-LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 247
P+ + T + + PN + L GHT V + +SP D +IW
Sbjct: 2 PLGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW----- 56
Query: 248 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGD 306
GA +G + H G ++ + W+ + LL + S D +IW ++G
Sbjct: 57 ----GAYDGKFEKTISGHKLG--------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 104
Query: 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 365
TL H +F +N + + +++GS D++ +WDVKT + + HS P V +
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKI 424
R+ +SS D + + + +KT V+ VK+ P G + + + D T K+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 425 WNMKQDKYVHDLREHSKEIYTI 446
W+ + K + H E Y I
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCI 246
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 155
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 156 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 103
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 104 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 159
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 220 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 279
Query: 445 TIRWSPT 451
+ PT
Sbjct: 280 STACHPT 286
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 63
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 64 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 117
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 145
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 146 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 262 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 158
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 106
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 107 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 162
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 223 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 282
Query: 445 TIRWSPT 451
+ PT
Sbjct: 283 STACHPT 289
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 66
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 67 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 148
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 149 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 265 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 161
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 110
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 111 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 445 TIRWSPT 451
+ PT
Sbjct: 287 STACHPT 293
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 21/250 (8%)
Query: 201 FEIPNSDVTI-LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLN 259
F PN + L GHT V + +SP D +IW GA +G
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW---------GAYDGKFE 61
Query: 260 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPI 318
+ H G ++ + W+ + LL + S D +IW ++G TL H +
Sbjct: 62 KTISGHKLG--------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTD 377
F +N + + +++GS D++ +WDVKT + + HS P V + R+ +SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 378 NMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436
+ + + +KT V+ VK+ P G + + + D T K+W+ + K +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 437 REHSKEIYTI 446
H E Y I
Sbjct: 234 TGHKNEKYCI 243
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 152
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 153 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L S DK +W ++++ H DV
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 112
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 113 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 229 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 288
Query: 445 TIRWSPT 451
+ PT
Sbjct: 289 STACHPT 295
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 72
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 73 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 126
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 154
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 155 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 271 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 167
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 113
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 114 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Query: 445 TIRWSPT 451
+ PT
Sbjct: 290 STACHPT 296
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 73
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 74 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 155
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 156 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 272 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 108
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 109 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 164
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 225 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 284
Query: 445 TIRWSPT 451
+ PT
Sbjct: 285 STACHPT 291
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 68
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 69 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 122
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 150
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 151 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 267 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 163
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 107
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 108 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 283
Query: 445 TIRWSPT 451
+ PT
Sbjct: 284 STACHPT 290
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 67
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 68 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 149
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 150 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 107
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 108 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 283
Query: 445 TIRWSPT 451
+ PT
Sbjct: 284 STACHPT 290
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 67
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 68 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G LK + +
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPAHS 149
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 150 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DN++Y+
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K K + L HS + + ++ GS
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 110
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 111 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 445 TIRWSPT 451
+ PT
Sbjct: 287 STACHPT 293
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 70
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 71 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + HS P V + R+ +SS D + +
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G + LK + +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-------------MCLKTLPAHS 152
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 153 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D T +WD + + + H + +V+ + S DNM+Y+
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N L TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K + L HS + + ++ GS
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 23/247 (9%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
+ GH + AWS D T +IW ++ G LK +KG +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------------CLKTLKGHS 110
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
N V ++N + L+ +GS+D RIW G TL H P+ ++ +N+ G
Sbjct: 111 NY----VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 330 LLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMIYVCKIGE 387
+++ S D +WD + + K + + P V + N + ++T DN + + +
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
Query: 388 NRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
+ +KT+ GH+ E C+ + + G + S S+D IWN++ + V L+ H+ +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 445 TIRWSPT 451
+ PT
Sbjct: 287 STACHPT 293
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 20/239 (8%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GHT V + +SP D +IW GA +G + H G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 70
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 329
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 71 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 388
+++GS D++ +WDVKT + HS P V + R+ +SS D + +
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 389 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ +KT V+ VK+ P G + + + D K+W+ + K + H E Y I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 25/223 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L+GH++ V C ++P D + RIW + G + LK + +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-------------MCLKTLPAHS 152
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD 328
+ V+ + +N +G+L+ + SYDG RIW T LK + P+ +K++ G
Sbjct: 153 DP----VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS----FATSSTDNMIYVCK 384
Y+L + D +WD + + + H + +V+ + S DNM+Y+
Sbjct: 209 YILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIW 425
+ ++ GH V PT +++AS + +D T K+W
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
N L TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 364 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+IW++K + L HS + + ++ GS
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 280 LDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSK-HKGPIFSLKWNKKGDYLLTGSC 335
L WN GTLLA+ D + RIW T GD K LS+ H+ + + W+ G+YL + S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 336 DKTAIVWDVKTEEWK--QQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGEN---R 389
D T +W ++++ E H V W + + AT S D ++V ++ E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREHSKEIYTIR 447
+ H +V V W P+ LLAS S D T K++ ++D +V L H ++++
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 448 WSPTG 452
+ P+G
Sbjct: 202 FDPSG 206
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 222 AWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281
AW+P D RIW GT + + K V ++++ V +
Sbjct: 23 AWNPAGTLLASCGGDRRIRIW----GTEG--------DSWICKSVLSEGHQRT--VRKVA 68
Query: 282 WNGEGTLLATGSYDGQARIWSTN-GDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
W+ G LA+ S+D IW N D +C TL H+ + S+ W G+ L T S DK+
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Query: 339 AIVWDVKTEEWKQQFEFHSGPTLDVD---WRNNVSF-ATSSTDNMIYVCKIGENRPI--K 392
VW+V E+ + + T DV W + A++S D+ + + + E+ +
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188
Query: 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
T GH+ V + +DP+G LASCSDD T +IW
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 44/252 (17%)
Query: 208 VTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
VT LEGH +EV + AW+P D + +W + + ++ V VL
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE-------EDEYECVSVL---- 146
Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKC-TLSKHKGPIFSLKWN 324
N ++DV + W+ LLA+ SYD +++ D + C TL H+ ++SL ++
Sbjct: 147 ---NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
Query: 325 KKGDYLLTGSCDKTAIVW-------------DVKTEEWKQQFE---FHSGPTLDVDW-RN 367
G L + S D+T +W WK FHS D+ W +
Sbjct: 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263
Query: 368 NVSFATSSTDNMIYVCKIGENRPIK--TFA-------GHQGEVNCVKWDPT-GSLLASCS 417
+ AT+ D+ I V + N + TF+ H +VNCV W+P LLASCS
Sbjct: 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323
Query: 418 DDVTAKIWNMKQ 429
DD W ++
Sbjct: 324 DDGEVAFWKYQR 335
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 2/179 (1%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 335
VT + ++ +++ + S D ++W GD + TL H + + ++ G L + S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTF 394
D T +WD + E + H V N ++S D I + ++ +KTF
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
GH+ V V+ + G+L+ASCS+D T ++W + + +LREH + I W+P S
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 90/252 (35%), Gaps = 57/252 (22%)
Query: 208 VTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
+ + GH V + + P D T ++W + G VK
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----------------VK 228
Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKW--- 323
T + V + N +GTL+A+ S D R+W + K L +H+ + + W
Sbjct: 229 TFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287
Query: 324 -----------------NKKGDYLLTGSCDKTAIVWDVKT----------EEWKQQFEFH 356
K G +LL+GS DKT +WDV T + W + FH
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 347
Query: 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 416
SG + + D + V R +KT H+ V + + T + +
Sbjct: 348 SGGKF---------ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398
Query: 417 SDDVTAKIWNMK 428
S D T K+W +
Sbjct: 399 SVDQTVKVWECR 410
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/313 (19%), Positives = 112/313 (35%), Gaps = 51/313 (16%)
Query: 174 KPEENGVLQGEKGP------EPMDIATTSASESFEIPNSDV------TILEGHTSEVCAC 221
+P E L G + P P+ SASE I D L+GHT V
Sbjct: 97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 222 AWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281
++ D T ++W ++ + G + +V+++
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQ-------------GFECIRTMHGHDH----NVSSVS 199
Query: 282 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340
G + + S D ++W G T + H+ + ++ N+ G + + S D+T
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259
Query: 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT---------------------SSTDNM 379
VW V T+E K + H + W S+++ S D
Sbjct: 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 380 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439
I + + + T GH V V + G + SC+DD T ++W+ K + + L H
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Query: 440 SKEIYTIRWSPTG 452
+ ++ + T
Sbjct: 380 EHFVTSLDFHKTA 392
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 16/202 (7%)
Query: 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSL 321
L+ + R+ E SK V L ++ + + +G D +IW N + K L+ H G + L
Sbjct: 123 LQRIHCRS-ETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 179
Query: 322 KWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 381
+++++ ++TGS D T VWDV T E H L + + NN T S D I
Sbjct: 180 QYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSIA 236
Query: 382 VCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
V + I + GH+ VN V +D + S S D T K+WN ++V L
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 439 HSKEI----YTIRWSPTGSGTN 456
H + I Y R +GS N
Sbjct: 295 HKRGIACLQYRDRLVVSGSSDN 316
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 22/218 (10%)
Query: 210 ILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
IL GHT V + DST R+W + G + VL L+ G
Sbjct: 168 ILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 225
Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY 329
SKD + W+ T+ L+ L H+ + + ++ K Y
Sbjct: 226 MVTCSKDRSIAVWDMAS---------------PTDITLRRVLVGHRAAVNVVDFDDK--Y 268
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 389
+++ S D+T VW+ T E+ + H + +R+ + + S+DN I + I
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL-VVSGSSDNTIRLWDIECGA 327
Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427
++ GH+ V C+++D + S + D K+W++
Sbjct: 328 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDL 363
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 284 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 343 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK----------WNKKGDYLLTG 333
G+ LL + S D W GD + K P+ S K G Y L+
Sbjct: 28 GQPNLLLSASRDKTLISWKLTGDDQ----KFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPIK 392
S DKT +WDV T E Q+F H + VD S S S D I V I + + +
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLA 142
Query: 393 TFAGHQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
T GH V+ V K D + S +D K WN+ Q + D H+ I T+
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 447 RWSPTGS 453
SP G+
Sbjct: 203 TASPDGT 209
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 284 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 343 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK----------WNKKGDYLLTG 333
G+ LL + S D W GD + K P+ S K G Y L+
Sbjct: 28 GQPNLLLSASRDKTLISWKLTGDDQ----KFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPIK 392
S DKT +WDV T E Q+F H + VD S S S D I V I + + +
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLA 142
Query: 393 TFAGHQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
T GH V+ V K D + S +D K WN+ Q + D H+ I T+
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 447 RWSPTGS 453
SP G+
Sbjct: 203 TASPDGT 209
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 284 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 343 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK----------WNKKGDYLLTG 333
G+ LL + S D W GD + K P+ S K G Y L+
Sbjct: 28 GQPNLLLSASRDKTLISWKLTGDDQ----KFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPIK 392
S DKT +WDV T E Q+F H + VD S S S D I V I + + +
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLA 142
Query: 393 TFAGHQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
T GH V+ V K D + S +D K WN+ Q + D H+ I T+
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 447 RWSPTGS 453
SP G+
Sbjct: 203 TASPDGT 209
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 35/254 (13%)
Query: 196 SASESFEIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQN 255
SA +FE+ + I+EGH +EV AWS D + IW T G +
Sbjct: 90 SADRTFEMDL--LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE----TDESGEEY 143
Query: 256 GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKC--TLS 312
++VL E S+DV + W+ LLA+ SYD RIW + D +C L+
Sbjct: 144 ECISVL---------QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194
Query: 313 KHKGPIFSLKWNK-KGDY-LLTGSCDKTAIVWDVKTEEWKQQFEF---------HSGPTL 361
H+G ++S ++K +G + L +GS D T VW ++ Q E+ H
Sbjct: 195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY 254
Query: 362 DVDWRNNVSFATSSTDNMIYVCK--IGENRPIKTFAGHQG--EVNCVKWDPTG--SLLAS 415
+V W N A+ D ++ V + GE + A G E+N VKW ++LA+
Sbjct: 255 NVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT 314
Query: 416 CSDDVTAKIWNMKQ 429
DD W++++
Sbjct: 315 GGDDGIVNFWSLEK 328
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKK 326
K + ++ W +LLA GS+D IW+ DL + H+ + + W+
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGPTLDVDWR-NNVSFATSSTDNM 379
G YL T S DK+ +W+ T+E +++E HS V W + A+SS D+
Sbjct: 119 GYYLATCSRDKSVWIWE--TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 380 IYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHD 435
+ + K ++ + GH+G V +D T + C SDD T ++W D D
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE-DD 235
Query: 436 LRE----------HSKEIYTIRWSPTG 452
+E H +++Y + W G
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNG 262
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 19/163 (11%)
Query: 288 LLATGSYDGQARIWSTNGDLKCTL-----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342
+LATGS D + ++ S D + + HK I S+ W L GS D T +W
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 343 DVKTEEWKQQFEF--------HSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGEN----R 389
K E + FE H V W N+ + AT S D +++ + E+
Sbjct: 86 -AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144
Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432
I H +V V W P+ +LLAS S D T +IW D +
Sbjct: 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW 187
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 284 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 343 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK----------WNKKGDYLLTG 333
G+ LL + S D W GD + K P+ S K G Y L+
Sbjct: 28 GQPNLLLSASRDKTLISWKLTGDDQ----KFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPIK 392
S DKT +WDV T E Q+F H + VD S S S D I V I + + +
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLA 142
Query: 393 TFAGHQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
T GH V+ V K D + S +D K WN+ Q + D H+ I T+
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 447 RWSPTGS 453
SP G+
Sbjct: 203 TASPDGT 209
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 284 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 343 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 129 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 241
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 75/187 (40%), Gaps = 22/187 (11%)
Query: 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK----------WNKKGDYLLTG 333
G+ LL + S D W GD + K P+ S K G Y L+
Sbjct: 22 GQPNLLLSASRDKTLISWKLTGDDQ----KFGVPVRSFKGHSHIVQDCTLTADGAYALSA 77
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPIK 392
S DKT +WDV T E Q+F H + VD S S S D I V I + + +
Sbjct: 78 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLA 136
Query: 393 TFAGHQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
T GH V+ V K D + S +D K WN+ Q + D H+ I T+
Sbjct: 137 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 196
Query: 447 RWSPTGS 453
SP G+
Sbjct: 197 TASPDGT 203
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Query: 311 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDV-------KTEEWKQQFEFHSGPTLD 362
L H+ + L WN YLL+ S D T +WD+ + + K F H+ D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 363 VDWR--NNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTGS-LLASC 416
V W + F + + D + + N +P T H EVNC+ ++P +LA+
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 417 SDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSP 450
S D T +W+++ K +H H EI+ ++WSP
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 333
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 287 TLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 341
+L + + D + IW T + T+ H + L +N +++L TGS DKT +
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 306
Query: 342 WDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYV---CKIGENRPIK--- 392
WD++ + K FE H V W N A+S TD ++V KIGE + +
Sbjct: 307 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 366
Query: 393 --------TFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKY 432
GH +++ W+P ++ S S+D ++W M ++ Y
Sbjct: 367 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 415
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
GE +P GHQ E + W+P L S SDD T +W++ H + + +K I+
Sbjct: 171 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 229
Query: 445 T 445
T
Sbjct: 230 T 230
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Query: 311 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDV-------KTEEWKQQFEFHSGPTLD 362
L H+ + L WN YLL+ S D T +WD+ + + K F H+ D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 363 VDWR--NNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTGS-LLASC 416
V W + F + + D + + N +P T H EVNC+ ++P +LA+
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 417 SDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSP 450
S D T +W+++ K +H H EI+ ++WSP
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 287 TLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 341
+L + + D + IW T + T+ H + L +N +++L TGS DKT +
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 342 WDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYV---CKIGENRPIK--- 392
WD++ + K FE H V W N A+S TD ++V KIGE + +
Sbjct: 305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 364
Query: 393 --------TFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKY 432
GH +++ W+P ++ S S+D ++W M ++ Y
Sbjct: 365 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
GE +P GHQ E + W+P L S SDD T +W++ H + + +K I+
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 227
Query: 445 T 445
T
Sbjct: 228 T 228
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Query: 311 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDV-------KTEEWKQQFEFHSGPTLD 362
L H+ + L WN YLL+ S D T +WD+ + + K F H+ D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 363 VDWR--NNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTGS-LLASC 416
V W + F + + D + + N +P T H EVNC+ ++P +LA+
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 417 SDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSP 450
S D T +W+++ K +H H EI+ ++WSP
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 335
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 287 TLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 341
+L + + D + IW T + T+ H + L +N +++L TGS DKT +
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 308
Query: 342 WDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYV---CKIGENRPIK--- 392
WD++ + K FE H V W N A+S TD ++V KIGE + +
Sbjct: 309 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 368
Query: 393 --------TFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKY 432
GH +++ W+P ++ S S+D ++W M ++ Y
Sbjct: 369 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 417
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
GE +P GHQ E + W+P L S SDD T +W++ H + + +K I+
Sbjct: 173 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 231
Query: 445 T 445
T
Sbjct: 232 T 232
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 119/254 (46%), Gaps = 36/254 (14%)
Query: 192 IATTSASESFEIPNSD----VTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 247
I + S + ++ N++ + L GHTS V C D+T R+W I G
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTV-RCM-HLHEKRVVSGSRDATLRVWDIETG 229
Query: 248 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 307
L+VL + HV V + ++G + +G+YD ++W +
Sbjct: 230 QC--------LHVL-MGHVAA--------VRCVQYDGR--RVVSGAYDFMVKVWDPETE- 269
Query: 308 KC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
C TL H ++SL+++ G ++++GS D + VWDV+T H T ++
Sbjct: 270 TCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 327
Query: 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTA 422
++N+ + + D+ + + I + ++T G HQ V C++++ + + + SDD T
Sbjct: 328 KDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTV 384
Query: 423 KIWNMKQDKYVHDL 436
K+W++K +++ +L
Sbjct: 385 KLWDLKTGEFIRNL 398
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 286 GTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
G + +GS D ++WS G TL H G ++S + + + +++GS D+T VW+
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
+T E H+ T+ + + S D + V I + + GH V CV
Sbjct: 187 ETGECIHTLYGHT-STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
++D G + S + D K+W+ + + +H L+ H+ +Y++++
Sbjct: 246 QYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 26/231 (11%)
Query: 210 ILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
+L+GH V C D+T ++W+ G L LV H G
Sbjct: 113 VLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKC--------LRTLV-GHTGGV 162
Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGD 328
+ + +D ++ +GS D ++W+ G+ TL H + + ++K
Sbjct: 163 WSSQMRD----------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-- 210
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 388
+++GS D T VWD++T + H V + + + + D M+ V
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETE 269
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439
+ T GH V +++D G + S S D + ++W+++ +H L H
Sbjct: 270 TCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDV-------KTEEWKQQFEF 355
N DL+ L H+ + L WN +LL+ S D T +WD+ K + K F
Sbjct: 168 NPDLR--LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTG 225
Query: 356 HSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTG 410
H+ DV W + F + + D + + N +P + H EVNC+ ++P
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 411 S-LLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSP 450
+LA+ S D T +W+++ K +H H EI+ ++WSP
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 287 TLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 341
+L + + D + IW T + ++ H + L +N +++L TGS DKT +
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 342 WDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYV---CKIGENR------ 389
WD++ + K FE H V W N A+S TD + V KIGE +
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 390 ---PIKTF--AGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKY 432
P F GH +++ W+P ++ S S+D ++W M ++ Y
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM 427
GE P GHQ E + W+P +G LL S SDD T +W++
Sbjct: 165 GECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDI 207
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 12/141 (8%)
Query: 311 LSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDV---- 363
L+ HKG S ++ + L+TGS D+T ++WDV T + F EF SG T DV
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 364 -DWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
+ N F + S D + + + +R ++T+ GH+G++N VK+ P G + SDD T
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
Query: 422 AKIWNMKQDKYVHDLREHSKE 442
++++M+ H L+ +++E
Sbjct: 273 CRLFDMRTG---HQLQVYNRE 290
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 306 DLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
DL C TL H G ++SL W + +++++ S D IVW+ T + + H ++
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC 114
Query: 364 DWR-NNVSFATSSTDNMIYVCKIGE------NRPI-KTFAGHQGEVNCVKWDPTG-SLLA 414
+ N S A D+ + + N P+ + GH+G + ++ P + L
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 415 SCSDDVTAKIWNMKQDKYV 433
+ S D T +W++ + +
Sbjct: 175 TGSGDQTCVLWDVTTGQRI 193
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
+T GH G+V + W P + + S S D +WN + H ++ H + ++P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 452 G 452
G
Sbjct: 120 G 120
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 15/147 (10%)
Query: 201 FEIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNV 260
I + V GH ++ + + P D T R++ + G +
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH----------QL 284
Query: 261 LVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-----NGDLKCTLSKHK 315
V R + + VT++ ++ G LL G +G +W T +L + H+
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE 344
Query: 316 GPIFSLKWNKKGDYLLTGSCDKTAIVW 342
G I L + G L TGS DK +W
Sbjct: 345 GRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDV-------KTEEWKQQFEF 355
N DL+ L H+ + L WN +LL+ S D T +WD+ K + K F
Sbjct: 170 NPDLR--LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG 227
Query: 356 HSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTG 410
HS DV W + F + + D + + N +P H EVNC+ ++P
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 411 S-LLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSP 450
+LA+ S D T +W+++ K +H H EI+ + WSP
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 35/247 (14%)
Query: 211 LEGHTSEVCACAW-SPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
L GH E +W S D T +W I N G + G + K
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI-----NAGPKEGKI-----VDAKAI 224
Query: 270 TNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSK----HKGPIFSLKWN 324
S V + W+ +L + + D + IW T + S H + L +N
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 325 KKGDYLL-TGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMI 380
+++L TGS DKT +WD++ + K FE H V W N A+S TD +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 381 YV---CKIGENRPIK-----------TFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIW 425
V KIGE + + GH +++ W+P ++ S S+D +IW
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Query: 426 NMKQDKY 432
M ++ Y
Sbjct: 405 QMAENIY 411
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDV-------KTEEWKQQFEF 355
N DL+ L H+ + L WN +LL+ S D T +WD+ K + K F
Sbjct: 170 NPDLR--LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG 227
Query: 356 HSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTG 410
HS DV W + F + + D + + N +P H EVNC+ ++P
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 411 S-LLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSP 450
+LA+ S D T +W+++ K +H H EI+ + WSP
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 95/247 (38%), Gaps = 35/247 (14%)
Query: 211 LEGHTSEVCACAW-SPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
L GH E +W S D T +W I N G + G + K
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDI-----NAGPKEGKI-----VDAKAI 224
Query: 270 TNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSK----HKGPIFSLKWN 324
S V + W+ +L + + D + IW T + S H + L +N
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 325 KKGDYLL-TGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMI 380
+++L TGS DKT +WD++ + K FE H V W N A+S TD +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 381 YV---CKIGENRPIK-----------TFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIW 425
V KIGE + + GH +++ W+P ++ S S+D +IW
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Query: 426 NMKQDKY 432
++ Y
Sbjct: 405 QXAENIY 411
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 25/247 (10%)
Query: 218 VCACAWSPXXXXXXXXXXDSTARIWTIA-DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 276
V ACA++P D+ ++ + D N A+ K V TN
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK--------KSVAMHTNY---- 156
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKW--NKKGDYLLTG 333
++ + + T S DG +W +G L + H + L ++ G+ ++G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIK 392
CDK A+VWD+++ + Q FE H V + + +FA+ S D C++ + R +
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA---TCRLYDLRADR 273
Query: 393 TFAGHQGE-----VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
A + E + V + +G LL + +D T +W++ + V L H + T+R
Sbjct: 274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR 333
Query: 448 WSPTGSG 454
SP G+
Sbjct: 334 VSPDGTA 340
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 95/226 (42%), Gaps = 28/226 (12%)
Query: 256 GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCTLS 312
G + + +KG N+ V +DW + + + S DG+ +W +TN + T+
Sbjct: 50 GQFVMKTRRTLKGHGNK----VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM- 104
Query: 313 KHKGP---IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
P + + + G + G D V+ + ++ + + ++ +
Sbjct: 105 ----PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC 160
Query: 370 SFA-------TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDV 420
SF T+S D + + + +++F GH +V C+ P TG+ S D
Sbjct: 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG----SGTNNPNQQL 462
A +W+M+ + V H ++ ++R+ P+G SG+++ +L
Sbjct: 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 21/217 (9%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
HT+ + AC+++ D T +W + G +VL L T
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET--- 209
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
G +G D +A +W +G H+ + S+++ GD +
Sbjct: 210 ------------GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS 257
Query: 333 GSCDKTAIVWDVKTEE----WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 388
GS D T ++D++ + + ++ ++D + FA D I V + +
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA-GYNDYTINVWDVLKG 316
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
+ GH+ V+ ++ P G+ S S D T ++W
Sbjct: 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
Query: 252 GAQNGPLNVLVL---KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK 308
G +NG + +L L + + R K K V + + + L + S D + ++W+ D
Sbjct: 985 GDENGAIEILELVNNRIFQSRFQHK-KTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC 1043
Query: 309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368
L H+ + + K LL+ S D T VW++ T ++ F H G L D ++
Sbjct: 1044 IFLRGHQETVKDFRL-LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHD 1102
Query: 369 VS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427
+ F+++S D + P+ GH G V C + +LLA+ D+ +IWN+
Sbjct: 1103 ATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Query: 428 KQDKYVH 434
+ +H
Sbjct: 1163 SNGELLH 1169
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 109/302 (36%), Gaps = 38/302 (12%)
Query: 174 KPEENGVLQGEKGPEPMDIATTSASESFEIPNSD----VTILEGHTSEVCACAWSPXXXX 229
+P + V + IA+ A ++ ++ ++ + ++ H EV CA+S
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 230 XXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--T 287
D +IW G L H +E S+ V +
Sbjct: 678 IATCSVDKKVKIWNSMTGE--------------LVHT---YDEHSEQVNCCHFTNSSHHL 720
Query: 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV-- 344
LLATGS D ++W N + + T+ H + +++ L + S D T +WD
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 345 ----KTEEWKQQFEFHSGPTLDVD-------WRNNVSFATSSTDNMIYVCKIGENRPI-K 392
K+ KQ F P D++ W + + + N I++ I + + +
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGE 840
Query: 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
GH + + P L ++WN V D R H ++ + +SP G
Sbjct: 841 IHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDG 900
Query: 453 SG 454
S
Sbjct: 901 SS 902
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 91/256 (35%), Gaps = 22/256 (8%)
Query: 206 SDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGA----------QN 255
S V GH S V +SP D T R+W N Q
Sbjct: 879 SKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQE 938
Query: 256 GPLNVLVLKHVK------GRTNE----KSKDVTTLDWNGEGTLLATGSYDGQARIWS-TN 304
+ VL + H++ GRT + V+ + +A G +G I N
Sbjct: 939 NEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVN 998
Query: 305 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364
+ + +HK ++ +++ L++ S D VW+ + ++ H D
Sbjct: 999 NRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFR 1057
Query: 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424
N + S D + V I K F HQG V + +S S D TAKI
Sbjct: 1058 LLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKI 1117
Query: 425 WNMKQDKYVHDLREHS 440
W+ +H+LR H+
Sbjct: 1118 WSFDLLLPLHELRGHN 1133
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 284 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 343 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393
+K + +W Q D D +V+ ++ D + + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
F GH +N + P G+L+AS D +WN+ K + L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSP 247
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 74/187 (39%), Gaps = 22/187 (11%)
Query: 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK----------WNKKGDYLLTG 333
G+ LL + S D W GD + K P+ S K G Y L+
Sbjct: 28 GQPNLLLSASRDKTLISWKLTGDDQ----KFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPIK 392
S DKT +WDV T E Q+F H VD S S S D I V I + + +
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLA 142
Query: 393 TFAGHQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
T GH V+ V K D + S +D K WN+ Q + D H+ I T+
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 447 RWSPTGS 453
SP G+
Sbjct: 203 TASPDGT 209
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 25/232 (10%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGT------SNGGAQNGPLNVLVLKHVK 267
HTS VC +S + T +++ ++DG+ + A P N+
Sbjct: 63 HTSVVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENL------- 114
Query: 268 GRTNEKSKD--VTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWN 324
++ S D + ++ ++ +G LATG+ D RIW N + L H+ I+SL +
Sbjct: 115 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 174
Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDNMIYVC 383
GD L++GS D+T +WD++T + G T+ V + A S D + V
Sbjct: 175 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 384 KIGENRPIKTF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
++ GH+ V V + G + S S D + K+WN++
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 46/250 (18%)
Query: 208 VTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
V IL+GH ++ + + P D T RIW + G + L L
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS----------LTLSIED 207
Query: 268 GRTNEKSKDVTTLDWN-GEGTLLATGSYDGQARIW-STNGDLKCTL-------SKHKGPI 318
G VTT+ + G+G +A GS D R+W S G L L + HK +
Sbjct: 208 G--------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS--ST 376
+S+ + + G +++GS D++ +W+++ K + + T +V + + F S +T
Sbjct: 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 319
Query: 377 DNMIYVCKIGENR-----------PIKTFAGHQGEV------NCVKWDPTGSLLASCSDD 419
N Y+ ++R P+ GH+ V N P ++ A+ S D
Sbjct: 320 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379
Query: 420 VTAKIWNMKQ 429
A+IW K+
Sbjct: 380 CKARIWKYKK 389
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373
H + +K++ G+YL TG C+KT V+ V + S D + N +
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLN----TS 117
Query: 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433
SS + +Y+ V + P G LA+ ++D +IW+++ K V
Sbjct: 118 SSPSSDLYI-------------------RSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 158
Query: 434 HDLREHSKEIYTIRWSPTG 452
L+ H ++IY++ + P+G
Sbjct: 159 MILQGHEQDIYSLDYFPSG 177
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP---IFSLKWNKKGDYLLTGSCD 336
+DW+ G +LA + D +WS + L + + P I S+ W K+G+YL G+
Sbjct: 122 VDWS-SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 179
Query: 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV--CKIGENRPIKTF 394
+WDV+ ++ + HS + W N+ ++ S I+ ++ E+ + T
Sbjct: 180 AEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-VATL 237
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHSKEIYTIRWSP 450
+GH EV ++W P G LAS +D +W + + +H + + W P
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 451 -------TGSGTNN 457
TG GT++
Sbjct: 298 WQSNVLATGGGTSD 311
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLL-TGS 334
++++ W EG LA G+ + ++W + ++ H + SL WN Y+L +GS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGS 217
Query: 335 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGENR- 389
DV+ E HS + W + A+ DN++ V GE
Sbjct: 218 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 277
Query: 390 -PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
P++TF HQG V V W P S +LA+ + D +IWN+ + + HS ++ +
Sbjct: 278 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 336
Query: 446 IRWSP 450
I WSP
Sbjct: 337 ILWSP 341
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 26/226 (11%)
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
+A GTS+ Q +V K ++ T+ ++ V +L WN +L++GS G
Sbjct: 173 LAVGTSSAEVQ--LWDVQQQKRLRNMTSHSAR-VGSLSWNS--YILSSGSRSGHIH---- 223
Query: 304 NGDLK------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WK--QQF 353
+ D++ TLS H + L+W G +L +G D VW E W Q F
Sbjct: 224 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF 283
Query: 354 EFHSGPTLDVDW----RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 409
H G V W N ++ ++D I + + + H +V + W P
Sbjct: 284 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPH 342
Query: 410 GSLLASCSDDVTAK--IWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
L S + IW V +L+ H+ + ++ SP G+
Sbjct: 343 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 388
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 12/178 (6%)
Query: 259 NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKC----TLSK 313
+V V +H + S++V L W +G LA+G D +W S G+ T ++
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 314 HKGPIFSLKWNKKGDYLLT---GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370
H+G + ++ W +L G+ D+ +W+V + + HS + W +
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 344
Query: 371 FATSS---TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
S N + + K + GH V + P G+ +AS + D T ++W
Sbjct: 345 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 20/208 (9%)
Query: 195 TSASESFEIPNSDVTI-------LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 247
+S S S I + DV + L GH+ EVC W+P D+ +W A G
Sbjct: 214 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 273
Query: 248 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 307
+ G + + +G K V W G+ D RIW+
Sbjct: 274 ------EGGWVPLQTFTQHQGAV----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 323
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
+ + S+ W+ L++G ++W T + + H+ L +
Sbjct: 324 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 383
Query: 366 R-NNVSFATSSTDNMIYVCKIGENRPIK 392
+ + A+++ D + + + E P +
Sbjct: 384 SPDGATVASAAADETLRLWRCFELDPAR 411
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP---IFSLKWNKKGDYLLTGSCD 336
+DW+ G +LA + D +WS + L + + P I S+ W K+G+YL G+
Sbjct: 111 VDWS-SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 168
Query: 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV--CKIGENRPIKTF 394
+WDV+ ++ + HS + W N+ ++ S I+ ++ E+ + T
Sbjct: 169 AEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-VATL 226
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHSKEIYTIRWSP 450
+GH EV ++W P G LAS +D +W + + +H + + W P
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 451 -------TGSGTNN 457
TG GT++
Sbjct: 287 WQSNVLATGGGTSD 300
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLL-TGS 334
++++ W EG LA G+ + ++W + ++ H + SL WN Y+L +GS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGS 206
Query: 335 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGENR- 389
DV+ E HS + W + A+ DN++ V GE
Sbjct: 207 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 266
Query: 390 -PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
P++TF HQG V V W P S +LA+ + D +IWN+ + + HS ++ +
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 325
Query: 446 IRWSP 450
I WSP
Sbjct: 326 ILWSP 330
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 26/226 (11%)
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
+A GTS+ Q +V K ++ T+ ++ V +L WN +L++GS G
Sbjct: 162 LAVGTSSAEVQ--LWDVQQQKRLRNMTSHSAR-VGSLSWNS--YILSSGSRSGHIH---- 212
Query: 304 NGDLK------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WK--QQF 353
+ D++ TLS H + L+W G +L +G D VW E W Q F
Sbjct: 213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF 272
Query: 354 EFHSGPTLDVDW----RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 409
H G V W N ++ ++D I + + + H +V + W P
Sbjct: 273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPH 331
Query: 410 GSLLASCSDDVTAK--IWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
L S + IW V +L+ H+ + ++ SP G+
Sbjct: 332 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 377
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 12/178 (6%)
Query: 259 NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKC----TLSK 313
+V V +H + S++V L W +G LA+G D +W S G+ T ++
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 314 HKGPIFSLKWNKKGDYLLT---GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370
H+G + ++ W +L G+ D+ +W+V + + HS + W +
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 333
Query: 371 FATSS---TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
S N + + K + GH V + P G+ +AS + D T ++W
Sbjct: 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 20/208 (9%)
Query: 195 TSASESFEIPNSDVTI-------LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 247
+S S S I + DV + L GH+ EVC W+P D+ +W A G
Sbjct: 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262
Query: 248 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 307
+ G + + +G K V W G+ D RIW+
Sbjct: 263 ------EGGWVPLQTFTQHQGAV----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
+ + S+ W+ L++G ++W T + + H+ L +
Sbjct: 313 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 372
Query: 366 R-NNVSFATSSTDNMIYVCKIGENRPIK 392
+ + A+++ D + + + E P +
Sbjct: 373 SPDGATVASAAADETLRLWRCFELDPAR 400
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 34/240 (14%)
Query: 211 LEGHTSEVCACAWSPXX-XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
L+GH V A +P D T +W + +N G + ++G
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------RALRGH 85
Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGD 328
++ S V + D G +GS+DG R+W T G H + S+ ++
Sbjct: 86 SHFVSDVVISSD----GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 329 YLLTGSCDKTAIVWD-VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
+++GS DKT +W+ + ++ Q E HS +W + V F+ +S++ +I C G
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHS------EWVSCVRFSPNSSNPIIVSC--GW 193
Query: 388 NRPIKTF-----------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436
++ +K + GH G +N V P GSL AS D A +W++ + K+++ L
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCK- 384
G + L+GS D T +WD+ T ++F H+ L V + +N + S D I +
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442
+G + H V+CV++ P S ++ SC D K+WN+ K + H+
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217
Query: 443 IYTIRWSPTGS 453
+ T+ SP GS
Sbjct: 218 LNTVTVSPDGS 228
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 34/240 (14%)
Query: 211 LEGHTSEVCACAWSPXX-XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
L+GH V A +P D T +W + +N G + ++G
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------RALRGH 62
Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGD 328
++ S V + D G +GS+DG R+W T G H + S+ ++
Sbjct: 63 SHFVSDVVISSD----GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 329 YLLTGSCDKTAIVWD-VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
+++GS DKT +W+ + ++ Q E HS +W + V F+ +S++ +I C G
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHS------EWVSCVRFSPNSSNPIIVSC--GW 170
Query: 388 NRPIKTF-----------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436
++ +K + GH G +N V P GSL AS D A +W++ + K+++ L
Sbjct: 171 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 230
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCK- 384
G + L+GS D T +WD+ T ++F H+ L V + +N + S D I +
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442
+G + H V+CV++ P S ++ SC D K+WN+ K + H+
Sbjct: 135 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 194
Query: 443 IYTIRWSPTGS 453
+ T+ SP GS
Sbjct: 195 LNTVTVSPDGS 205
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 19/245 (7%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
LEGH V + S D+ R+W + +G GP+
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV------------ 123
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 329
D TL ++ + LATG++ G+ I+ +G + +L I S+ ++ G Y
Sbjct: 124 -----DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178
Query: 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGEN 388
L +G+ D ++D+ T + E H+ P + + ++ T+S D I + +
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
T +GH V V + P + S S D + K+W++ VH +H +++ +++
Sbjct: 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
Query: 449 SPTGS 453
+ GS
Sbjct: 299 NGNGS 303
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP---IFSLKWNKKGDYLLTGSCD 336
+DW+ G +LA + D +WS + L + + P I S+ W K+G+YL G+
Sbjct: 31 VDWS-SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88
Query: 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV--CKIGENRPIKTF 394
+WDV+ ++ + HS + W N+ ++ S I+ ++ E+ + T
Sbjct: 89 AEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-VATL 146
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSP 450
+GH EV ++W P G LAS +D +W + + +H + + W P
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 451 -------TGSGTNN 457
TG GT++
Sbjct: 207 WQSNVLATGGGTSD 220
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLL-TGS 334
++++ W EG LA G+ + ++W + ++ H + SL WN Y+L +GS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGS 126
Query: 335 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGENR- 389
DV+ E HS + W + A+ DN++ V GE
Sbjct: 127 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186
Query: 390 -PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
P++TF HQG V V W P S +LA+ + D +IWN+ + + HS ++ +
Sbjct: 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 245
Query: 446 IRWSP 450
I WSP
Sbjct: 246 ILWSP 250
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 26/226 (11%)
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
+A GTS+ Q +V K ++ T+ ++ V +L WN +L++GS G
Sbjct: 82 LAVGTSSAEVQ--LWDVQQQKRLRNMTSHSAR-VGSLSWNS--YILSSGSRSGHIH---- 132
Query: 304 NGDLK------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WK--QQF 353
+ D++ TLS H + L+W G +L +G D VW E W Q F
Sbjct: 133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF 192
Query: 354 EFHSGPTLDVDW----RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 409
H G V W N ++ ++D I + + + H +V + W P
Sbjct: 193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPH 251
Query: 410 GSLLASCSDDVTAK--IWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
L S + IW V +L+ H+ + ++ SP G+
Sbjct: 252 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 297
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 12/178 (6%)
Query: 259 NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKC----TLSK 313
+V V +H + S++V L W +G LA+G D +W S G+ T ++
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 314 HKGPIFSLKWNKKGDYLLT---GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370
H+G + ++ W +L G+ D+ +W+V + + HS + W +
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 253
Query: 371 FATSS---TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
S N + + K + GH V + P G+ +AS + D T ++W
Sbjct: 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 20/206 (9%)
Query: 195 TSASESFEIPNSDVTI-------LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 247
+S S S I + DV + L GH+ EVC W+P D+ +W A G
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182
Query: 248 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 307
+ G + + +G K V W G+ D RIW+
Sbjct: 183 ------EGGWVPLQTFTQHQGAV----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
+ + S+ W+ L++G ++W T + + H+ L +
Sbjct: 233 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 292
Query: 366 R-NNVSFATSSTDNMIYVCKIGENRP 390
+ + A+++ D + + + E P
Sbjct: 293 SPDGATVASAAADETLRLWRCFELDP 318
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLT 332
K V + + +G L + S D ++W+ L H+ + F L + + LL+
Sbjct: 1011 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR---LLS 1067
Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPI 391
S D T VW+V T ++ F H G L ++ + F+++S D + P+
Sbjct: 1068 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Query: 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434
GH G V C + G LLA+ D+ +IWN+ + +H
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 282 WNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340
++ +G +A+ D +++ + G+ + H+ + ++ Y+ T S DK
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 341 VWDVKTEEWKQQFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGENRPIKTFAGH 397
+WD T + ++ HS + N++ AT S D + + + + T GH
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
VN ++ P LLASCS D T ++W+++
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 112/301 (37%), Gaps = 38/301 (12%)
Query: 174 KPEENGVLQGEKGPEPMDIATTSASESFEIPNSD----VTILEGHTSEVCACAWSPXXXX 229
+P + V + IA+ A ++ ++ ++ + ++ H EV CA+S
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 230 XXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-- 287
D +IW A G L H +E S+ V + +
Sbjct: 679 IATCSADKKVKIWDSATGK--------------LVHT---YDEHSEQVNCCHFTNKSNHL 721
Query: 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346
LLATGS D ++W N + + T+ H + +++ + L + S D T +WDV++
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 347 EE------WKQQFEFHSGPTLDVD-------WRNNVSFATSSTDNMIYVCKIGENRPI-K 392
K+ F P DV+ W + + N + + I + + +
Sbjct: 782 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 841
Query: 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
GH + + P L ++WN+ V D R H ++ + +SP G
Sbjct: 842 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 901
Query: 453 S 453
S
Sbjct: 902 S 902
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 24/263 (9%)
Query: 212 EGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGA----------QNGPLNVL 261
GH S V +SP D T R+W N Q VL
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 262 VLKHVKGRTNEKSKDVTTLDWNGEGTL-----------LATGSYDGQARIWST-NGDLKC 309
+ +++G K +D+ E + +A G DG +I N +
Sbjct: 946 AVDNIRGLQLIAGK-TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 1004
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
+ HK + +++ G L++ S D VW+ +T ++ + H D +
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1063
Query: 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429
+ S D + V + R + F HQG V + +S S D TAKIW+
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1123
Query: 430 DKYVHDLREHSKEIYTIRWSPTG 452
+H+L+ H+ + +S G
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDG 1146
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
A+ D + V K + H+ EV C + S +A+CS D KIW+
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 696
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFL 472
K VH EHS+++ + TN N L+ +FL
Sbjct: 697 KLVHTYDEHSEQVNCCHF------TNKSNHLLLATGSNDFFL 732
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
H V +CA S D TA+IW+ D S PL+ L KG
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSF-DLLS-------PLHEL-----KGHNGCV 1137
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN 304
+LD G LLATG +G+ RIW+ +
Sbjct: 1138 RCSAFSLD----GILLATGDDNGEIRIWNVS 1164
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLT 332
K V + + +G L + S D ++W+ L H+ + F L + + LL+
Sbjct: 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR---LLS 1060
Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPI 391
S D T VW+V T ++ F H G L ++ + F+++S D + P+
Sbjct: 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Query: 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434
GH G V C + G LLA+ D+ +IWN+ + +H
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 282 WNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340
++ +G +A+ D +++ + G+ + H+ + ++ Y+ T S DK
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 341 VWDVKTEEWKQQFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGENRPIKTFAGH 397
+WD T + ++ HS + N++ AT S D + + + + T GH
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
VN ++ P LLASCS D T ++W+++
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 112/301 (37%), Gaps = 38/301 (12%)
Query: 174 KPEENGVLQGEKGPEPMDIATTSASESFEIPNSD----VTILEGHTSEVCACAWSPXXXX 229
+P + V + IA+ A ++ ++ ++ + ++ H EV CA+S
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 230 XXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-- 287
D +IW A G L H +E S+ V + +
Sbjct: 672 IATCSADKKVKIWDSATGK--------------LVHT---YDEHSEQVNCCHFTNKSNHL 714
Query: 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346
LLATGS D ++W N + + T+ H + +++ + L + S D T +WDV++
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 347 EE------WKQQFEFHSGPTLDVD-------WRNNVSFATSSTDNMIYVCKIGENRPI-K 392
K+ F P DV+ W + + N + + I + + +
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834
Query: 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
GH + + P L ++WN+ V D R H ++ + +SP G
Sbjct: 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894
Query: 453 S 453
S
Sbjct: 895 S 895
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 24/263 (9%)
Query: 212 EGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGA----------QNGPLNVL 261
GH S V +SP D T R+W N Q VL
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 262 VLKHVKGRTNEKSKDVTTLDWNGEGTL-----------LATGSYDGQARIWST-NGDLKC 309
+ +++G K +D+ E + +A G DG +I N +
Sbjct: 939 AVDNIRGLQLIAGK-TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
+ HK + +++ G L++ S D VW+ +T ++ + H D +
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQDS 1056
Query: 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429
+ S D + V + R + F HQG V + +S S D TAKIW+
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116
Query: 430 DKYVHDLREHSKEIYTIRWSPTG 452
+H+L+ H+ + +S G
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDG 1139
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
A+ D + V K + H+ EV C + S +A+CS D KIW+
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFL 472
K VH EHS+++ + TN N L+ +FL
Sbjct: 690 KLVHTYDEHSEQVNCCHF------TNKSNHLLLATGSNDFFL 725
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
H V +CA S D TA+IW+ D S PL+ L KG
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSF-DLLS-------PLHEL-----KGHNGCV 1130
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN 304
+LD G LLATG +G+ RIW+ +
Sbjct: 1131 RCSAFSLD----GILLATGDDNGEIRIWNVS 1157
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 285 EGTLLATGSYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDKTA 339
+G +GS+DG+ R+W DL +S H + S+ ++ +++ S D+T
Sbjct: 441 DGQFALSGSWDGELRLW----DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 340 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA---------TSSTDNMIYVCKIGENRP 390
+W+ E ++ G DW + V F+ ++S D + V + +
Sbjct: 497 KLWNTLGE---CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
Query: 391 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
T AGH G V+ V P GSL AS D +W++ + K ++ L +S I+ + +SP
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSP 612
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 16/206 (7%)
Query: 261 LVLKH-VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC------TLSK 313
LVLK ++ T+ + T +D ++ + S D +W D K L+
Sbjct: 372 LVLKGTMRAHTDMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG 428
Query: 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFA 372
H + + + G + L+GS D +WD+ ++F H+ L V + +N
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 373 TSSTDNMIYVCK-IGENRPIKTFAG--HQGEVNCVKWDPTG--SLLASCSDDVTAKIWNM 427
++S D I + +GE + + G H+ V+CV++ P + S S D T K+WN+
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 428 KQDKYVHDLREHSKEIYTIRWSPTGS 453
K L H+ + T+ SP GS
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGS 574
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 32/181 (17%)
Query: 213 GHTSEVCACAWSPXXXXXXXXXXDSTARIW-TIADGTSNGGAQNGPLNVLVLKHVKGRTN 271
GHT +V + A+S D T ++W T+ + K+
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE----------------CKYTISEGG 513
Query: 272 EKSKDVTTLDWNGEGTL---LATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKG 327
E +D + TL + + S+D ++W+ +N L+ TL+ H G + ++ + G
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
+G D ++WD+ E K+ + + N+V A + N ++C E
Sbjct: 574 SLCASGGKDGVVLLWDL--AEGKKLYSLEA---------NSVIHALCFSPNRYWLCAATE 622
Query: 388 N 388
+
Sbjct: 623 H 623
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 301
T K T+L+W+ +G+ L +G DG R+W
Sbjct: 658 TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 28/235 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GH +++ A W D IW D + PL
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPL------------ 106
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 325
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 107 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 163
Query: 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 384
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHD 435
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 278
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 22/234 (9%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-----IFSLKWNKKGDYLL 331
+ + W + LL + S DG+ IW D T H P + + + G+Y+
Sbjct: 69 IYAMHWGTDSRLLVSASQDGKLIIW----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 124
Query: 332 TGSCDKTAIVWDVKTEEW----KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
G D ++++KT E ++ H+G + ++ TSS D + I
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 184
Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
+ TF GH G+V + P L S + D +AK+W++++ H +I I
Sbjct: 185 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 244
Query: 448 WSPTG----SGTNNPNQQLILARLIPYFLYW-----ICSIYFKYFGTTERANLP 492
+ P G +G+++ +L R + + IC I F + R L
Sbjct: 245 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 298
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
TL H I+++ W L++ S D I+WD T + H+ P L W
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 114
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 173
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
D T +W+++ + H+ ++ ++ +P
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 205
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334
DV +L + L +G+ D A++W G + T + H+ I ++ + G+ TGS
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI----YVCKIGENRP 390
D T ++D++ ++ + H + +VSF+ S + + C + +
Sbjct: 257 DDATCRLFDLRADQELMTYS-HDNIICGI---TSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Query: 391 IK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
AGH V+C+ G +A+ S D KIWN
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 31 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 89
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
IW+ VH + S + T ++P+G
Sbjct: 90 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
HT +V + + +P D++A++W + +G + T +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR----------------QTFTGHE 237
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF---SLKWNKKGDYL 330
S D+ + + G ATGS D R++ D + H I S+ ++K G L
Sbjct: 238 S-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 331 LTGSCDKTAIVWDV 344
L G D VWD
Sbjct: 297 LAGYDDFNCNVWDA 310
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 28/235 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GH +++ A W D IW D + PL
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPL------------ 95
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 325
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 152
Query: 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 384
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHD 435
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 22/234 (9%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-----IFSLKWNKKGDYLL 331
+ + W + LL + S DG+ IW D T H P + + + G+Y+
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIW----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 332 TGSCDKTAIVWDVKTEEW----KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
G D ++++KT E ++ H+G + ++ TSS D + I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
+ TF GH G+V + P L S + D +AK+W++++ H +I I
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 448 WSPTG----SGTNNPNQQLILARLIPYFLYW-----ICSIYFKYFGTTERANLP 492
+ P G +G+++ +L R + + IC I F + R L
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
TL H I+++ W L++ S D I+WD T + H+ P L W
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
D T +W+++ + H+ ++ ++ +P
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334
DV +L + L +G+ D A++W G + T + H+ I ++ + G+ TGS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI----YVCKIGENRP 390
D T ++D++ ++ + H + +VSF+ S + + C + +
Sbjct: 246 DDATCRLFDLRADQELMTYS-HDNIICGI---TSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 391 IK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
AGH V+C+ G +A+ S D KIWN
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 78
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
IW+ VH + S + T ++P+G
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 20/134 (14%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
HT +V + + +P D++A++W + +G +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-----------------CRQTFTGH 225
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF---SLKWNKKGDYL 330
D+ + + G ATGS D R++ D + H I S+ ++K G L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 331 LTGSCDKTAIVWDV 344
L G D VWD
Sbjct: 286 LAGYDDFNCNVWDA 299
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 28/235 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GH +++ A W D IW D + PL
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPL------------ 95
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 325
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 152
Query: 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 384
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHD 435
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 22/234 (9%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-----IFSLKWNKKGDYLL 331
+ + W + LL + S DG+ IW D T H P + + + G+Y+
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIW----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 332 TGSCDKTAIVWDVKTEEW----KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
G D ++++KT E ++ H+G + ++ TSS D + I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
+ TF GH G+V + P L S + D +AK+W++++ H +I I
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 448 WSPTG----SGTNNPNQQLILARLIPYFLYW-----ICSIYFKYFGTTERANLP 492
+ P G +G+++ +L R + + IC I F + R L
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
TL H I+++ W L++ S D I+WD T + H+ P L W
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
D T +W+++ + H+ ++ ++ +P
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334
DV +L + L +G+ D A++W G + T + H+ I ++ + G+ TGS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI----YVCKIGENRP 390
D T ++D++ ++ + H + +VSF+ S + + C + +
Sbjct: 246 DDATCRLFDLRADQELMTYS-HDNIICGI---TSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 391 IK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
AGH V+C+ G +A+ S D KIWN
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 78
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
IW+ VH + S + T ++P+G
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
HT +V + + +P D++A++W + +G + T +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR----------------QTFTGHE 226
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF---SLKWNKKGDYL 330
S D+ + + G ATGS D R++ D + H I S+ ++K G L
Sbjct: 227 S-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 331 LTGSCDKTAIVWDV 344
L G D VWD
Sbjct: 286 LAGYDDFNCNVWDA 299
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 28/235 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GH +++ A W D IW D + PL
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW---DSYTTNKVHAIPL------------ 95
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 325
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 152
Query: 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 384
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHD 435
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 22/234 (9%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-----IFSLKWNKKGDYLL 331
+ + W + LL + S DG+ IW D T H P + + + G+Y+
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIW----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 332 TGSCDKTAIVWDVKTEEW----KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
G D ++++KT E ++ H+G + ++ TSS D + I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
+ TF GH G+V + P L S + D +AK+W++++ H +I I
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 448 WSPTG----SGTNNPNQQLILARLIPYFLYW-----ICSIYFKYFGTTERANLP 492
+ P G +G+++ +L R + + IC I F + R L
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
TL H I+++ W LL+ S D I+WD T + H+ P L W
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
D T +W+++ + H+ ++ ++ +P
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334
DV +L + L +G+ D A++W G + T + H+ I ++ + G+ TGS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI----YVCKIGENRP 390
D T ++D++ ++ + H + +VSF+ S + + C + +
Sbjct: 246 DDATCRLFDLRADQELMTYS-HDNIICGI---TSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 391 IK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
AGH V+C+ G +A+ S D KIWN
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK 78
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
IW+ VH + S + T ++P+G
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
HT +V + + +P D++A++W + +G + T +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR----------------QTFTGHE 226
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF---SLKWNKKGDYL 330
S D+ + + G ATGS D R++ D + H I S+ ++K G L
Sbjct: 227 S-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 331 LTGSCDKTAIVWDV 344
L G D VWD
Sbjct: 286 LAGYDDFNCNVWDA 299
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 28/235 (11%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GH +++ A W D IW D + PL
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW---DSYTTNKVHAIPL------------ 95
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 325
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 152
Query: 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 384
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHD 435
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 22/234 (9%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-----IFSLKWNKKGDYLL 331
+ + W + LL + S DG+ IW D T H P + + + G+Y+
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIW----DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 332 TGSCDKTAIVWDVKTEEW----KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
G D ++++KT E ++ H+G + ++ TSS D + I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
+ TF GH G+V + P L S + D +AK+W++++ H +I I
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 448 WSPTG----SGTNNPNQQLILARLIPYFLYW-----ICSIYFKYFGTTERANLP 492
+ P G +G+++ +L R + + IC I F + R L
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
TL H I+++ W LL+ S D I+WD T + H+ P L W
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 370 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
D T +W+++ + H+ ++ ++ +P
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334
DV +L + L +G+ D A++W G + T + H+ I ++ + G+ TGS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI----YVCKIGENRP 390
D T ++D++ ++ + H + +VSF+ S + + C + +
Sbjct: 246 DDATCRLFDLRADQELMTYS-HDNIICGI---TSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 391 IK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
AGH V+C+ G +A+ S D KIWN
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 364 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK 78
Query: 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
IW+ VH + S + T ++P+G
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 214 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
HT +V + + +P D++A++W + +G + T +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR----------------QTFTGHE 226
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF---SLKWNKKGDYL 330
S D+ + + G ATGS D R++ D + H I S+ ++K G L
Sbjct: 227 S-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 331 LTGSCDKTAIVWDV 344
L G D VWD
Sbjct: 286 LAGYDDFNCNVWDA 299
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 23/224 (10%)
Query: 213 GHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272
GH SEV + A+SP + ++W I A+ + V +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
+ V A+ +DG+ ++W+TN ++ T H+ + L + G Y+ T
Sbjct: 176 SANKVQPF-----APYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIAT 230
Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLD-VDWRNNVSFATSSTDNMIY---------- 381
G DK ++WD+ + Q+ EF +G T++ + + + + TD +
Sbjct: 231 GGKDKKLLIWDILNLTYPQR-EFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKA 289
Query: 382 -VCKIGENRPIKTFAGHQG---EVNCVKWDPTG-SLLASCSDDV 420
VC I E PI G +G + + W+ G L A +D V
Sbjct: 290 PVCTI-EAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV 332
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRNNVSF 371
FS K N+ L++GS DKT ++W + EE F H+ D+ F
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 372 ATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN-MKQ 429
A SS+ D + + + K F GHQ EV V + P + S + K+WN + +
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 430 DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYF 471
K+ +E HS + +R+SP N + PYF
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANK------VQPFAPYF 187
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 335
V+ L + E + S+D R+W G H+ ++S+ ++ +L+
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 336 DKTAIVWDVKTEEWKQQFEFHSGPTLD-VDWRNNVSFA-TSSTDNMI-----YVCKIGEN 388
++ +W++ E +F S + DW + V ++ + N + Y +G +
Sbjct: 139 EREIKLWNILGE-----CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 389 RPIK----------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
+K TF H+ VN + P G +A+ D IW++ Y +
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD 253
Query: 439 HSKEIYTIRWSP 450
I I ++P
Sbjct: 254 AGSTINQIAFNP 265
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 19/180 (10%)
Query: 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKG 327
R S V+ + + G + S+D R+W+ NG + H + S+ ++
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 328 DYLLTGSCDKTAIVWDVKTE-----------EWKQQFEFHSGPTLDVDWRNNVSFATSST 376
+++G D VW+VK E +W F P+LD +
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF--SPSLDAP-----VIVSGGW 174
Query: 377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436
DN++ V + R + GH V V P GSL AS D A++W++ + + + ++
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 311 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNV 369
L H + + + G++ ++ S D + +W+++ + + +F H+ L V + +N
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 370 SFATSSTDNMIYVCKI-GENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWN 426
+ DN + V + GE + H V+CV++ P+ ++ S D K+W+
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGS 453
+ + V DL+ H+ + ++ SP GS
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGS 209
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 105/298 (35%), Gaps = 77/298 (25%)
Query: 186 GPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIA 245
GP P S+ S+ +P+ LEGH++ V A S D + R+W +
Sbjct: 44 GPNP---DRHSSECSYGLPDRR---LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL- 96
Query: 246 DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305
QNG L H +KDV ++ ++ + + +G D R+W+ G
Sbjct: 97 --------QNGQCQYKFLGH--------TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Query: 306 DLKCTLSK--HKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361
+ TLS+ H + ++++ D +++G D VWD+ T + H+
Sbjct: 141 ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVT 200
Query: 362 DVDWRNNVSFATSS-------------------------------TDNMIYVCKIGENRP 390
V + S SS + N ++C E +
Sbjct: 201 SVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATE-KG 259
Query: 391 IKTF------------AGHQG------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430
I+ F HQG E + W GS L S D ++W + ++
Sbjct: 260 IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449
P + GH V+ V G+ S S D + ++WN++ + + H+K++ ++ +S
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 450 P 450
P
Sbjct: 119 P 119
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 34/206 (16%)
Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGD 328
E S T + G A+G G RIW T LK T+ GP+ + W+ +
Sbjct: 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-- 114
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----TLDVDWRNNVSFATSSTDNMIY-- 381
+ A V + + E + F F +G T N+V F S +I
Sbjct: 115 ------SKRIAAVGEGR-ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 382 ---VCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN--------M 427
I E P K TF H V+ V+++P GSL AS D T ++N +
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 428 KQDKYVHDLREHSKEIYTIRWSPTGS 453
+D + ++ HS ++ + WSP G+
Sbjct: 228 FEDDSLKNV-AHSGSVFGLTWSPDGT 252
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--------HKGPI 318
K E +K V ++ +N +G+L A+ DG +++ K + + H G +
Sbjct: 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKT 346
F L W+ G + + S DKT +W+V T
Sbjct: 243 FGLTWSPDGTKIASASADKTIKIWNVAT 270
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429
H +V CV W P LA+ S D + +WNM +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Query: 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347
+ GS D + R+++ N G+ H I S+ + Y+L+GS D T +W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 348 -EWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNC 403
+Q FE H + V + ++ +FA+ D + V +G++ P T G + VN
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 404 VKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
V + P + + SDD+T KIW+ + V L H + + PT
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 11/171 (6%)
Query: 291 TGSYDGQARIWS--TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTE 347
+GS D ++W+ N L+ T H+ + + +N K C D+T VW +
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 348 EWKQQFEFHSGPTLDVDWRNNVSF------ATSSTDNMIYVCKIGENRPIKTFAGHQGEV 401
F +G V++ + T+S D I + + T GH V
Sbjct: 174 --TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
+ + PT ++ S S+D T KIWN K L + + I PTG
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
Query: 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
D+K T S + + ++ ++LT +W+ +T+ + + P +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF 63
Query: 366 RNNVSFATSSTDNM-IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424
++ +D+ I V + F H + + PT + S SDD+T K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 425 WN 426
WN
Sbjct: 124 WN 125
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW-NKKGDYLLTGSCDKTAIVWDVKT 346
++ +GS+D A++W G L L H ++ K + + LT S DKT +W +
Sbjct: 116 VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QN 172
Query: 347 EEWKQQFE-FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK 405
++ + F H+ + ++ F + S D +I + ++T+ GH+ V C+K
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIK 232
Query: 406 WDPTGSLLASCSDDVTAKIWN 426
P G ++ SC +D T +IW+
Sbjct: 233 LLPNGDIV-SCGEDRTVRIWS 252
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD---VDWR 366
TL H+G + SL + + +++GS DKTA VW K + H+ D V +
Sbjct: 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFS 154
Query: 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
N F T+S D I + + ++ IKTF+G H V + G + SCS+D K+
Sbjct: 155 EN-KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLV 210
Query: 426 NMKQDKYVHDLREHSKEIYTIRWSPTG 452
+ + H +Y I+ P G
Sbjct: 211 DXHTGDVLRTYEGHESFVYCIKLLPNG 237
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFS 320
V+K G N+ + + +D +G ++ S DG ++ + GD+ T H+ ++
Sbjct: 175 VIKTFSGIHNDVVRHLAVVD---DGHFISC-SNDGLIKLVDXHTGDVLRTYEGHESFVYC 230
Query: 321 LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 380
+K GD + G D+T +W + KQ + VD +N S+DN++
Sbjct: 231 IKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLV 289
Query: 381 YV 382
+
Sbjct: 290 RI 291
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Query: 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347
+ GS D + R+++ N G+ H I S+ + Y+L+GS D T +W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 348 -EWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNC 403
+Q FE H + V + ++ +FA+ D + V +G++ P T G + VN
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 404 VKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
V + P + + SDD+T KIW+ + V L H + + PT
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 11/173 (6%)
Query: 289 LATGSYDGQARIWS--TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK 345
+ +GS D ++W+ N L+ T H+ + + +N K C D+T VW +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 346 TEEWKQQFEFHSGPTLDVDWRNNVSF------ATSSTDNMIYVCKIGENRPIKTFAGHQG 399
F +G V++ + T+S D I + + T GH
Sbjct: 172 QS--TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229
Query: 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
V+ + PT ++ S S+D T KIWN K L + + I PTG
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
Query: 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
D+K T S + + ++ ++LT +W+ +T+ + + P +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 366 RNNVSFATSSTDNM-IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424
++ +D+ I V + F H + + PT + S SDD+T K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 425 WN 426
WN
Sbjct: 124 WN 125
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 32/202 (15%)
Query: 275 KDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 333
+ +T + +N EG LL + S D A +W S NG+ TL H G I+S+ + Y +TG
Sbjct: 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG 92
Query: 334 SCDKTAIVWDVKTEE----WKQQFEFHSGPTLDVDWRNNVSFATSSTDNM--------IY 381
S D + +WDV + WK P V++ ++ + DN+ IY
Sbjct: 93 SADYSIKLWDVSNGQCVATWKSPV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147
Query: 382 ----------VCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429
+ K+ E PI H+G W G + + D +++
Sbjct: 148 EIERDSATHELTKVSE-EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 430 D-KYVHDLREHSKEIYTIRWSP 450
+ +YV + H K I +++SP
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSP 228
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 311 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP--TLDVDWRNN 368
L+ H+ P+ +K+NK+GD L + S D +A VW E + H+G ++DVD
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----TAK 423
T S D I + + + + T+ V V++ P G+ + D+V +
Sbjct: 88 YC-VTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 424 IWNMKQDKYVHDLREHSKE 442
I+ +++D H+L + S+E
Sbjct: 146 IYEIERDSATHELTKVSEE 164
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
GH+ + VK++ G LL SCS D +A +W + + L H+ I++I
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347
+ GS D + R+++ N G+ H I S+ + Y+L+GS D T +W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE-N 128
Query: 348 EW--KQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVN 402
W +Q FE H + V + ++ +FA+ D + V +G++ P T G + VN
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 403 CVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
V + P + + SDD+T KIW+ + V L H + + PT
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 11/173 (6%)
Query: 289 LATGSYDGQARIWS--TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK 345
+ +GS D ++W+ N L+ T H+ + + +N K C D+T VW +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 346 TEEWKQQFEFHSGPTLDVDWRNNVSFA------TSSTDNMIYVCKIGENRPIKTFAGHQG 399
F +G V++ + T+S D I + + T GH
Sbjct: 172 QS--TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229
Query: 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
V+ + PT ++ S S+D T KIWN K L + + I PTG
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 1/126 (0%)
Query: 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
D+K T S + + ++ ++LT +W+ +T+ + + P +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 366 RNNVSFATSSTDNM-IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424
++ +D+ I V + F H + + PT + S SDD+T K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 425 WNMKQD 430
WN + +
Sbjct: 124 WNWENN 129
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347
+ GS D + R+++ N G+ H I S+ + Y+L+GS D T +W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE-N 128
Query: 348 EW--KQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVN 402
W +Q FE H + V + ++ +FA+ D + V +G++ P T G + VN
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 403 CVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
V + P + + SDD+T KIW+ + V L H + + PT
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 11/173 (6%)
Query: 289 LATGSYDGQARIWS--TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK 345
+ +GS D ++W+ N L+ T H+ + + +N K C D+T VW +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 346 TEEWKQQFEFHSGPTLDVDWRNNVSFA------TSSTDNMIYVCKIGENRPIKTFAGHQG 399
F +G V++ + T+S D I + + T GH
Sbjct: 172 QS--TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229
Query: 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
V+ + PT ++ S S+D T KIWN K L + + I PTG
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 1/126 (0%)
Query: 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
D+K T S + + ++ ++LT +W+ +T+ + + P +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 366 RNNVSFATSSTDNM-IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424
++ +D+ I V + F H + + PT + S SDD+T K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 425 WNMKQD 430
WN + +
Sbjct: 124 WNWENN 129
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 286 GTLLATGSYDGQARIWSTNGDLKCTLSK----HKGPIFSLKWNKKGDYLLTGSCDKTAIV 341
G L GS+ R W D T+ K H GP+ + W+ G + T SCDKTA +
Sbjct: 54 GNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112
Query: 342 WDVKTEEWKQQFEFHSGPTLDVDW 365
WD+ + + Q H P + W
Sbjct: 113 WDLSSNQ-AIQIAQHDAPVKTIHW 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 268 GRTNEKSKDVTT---LD--WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK 322
G+T K++ + T LD W+ +G+ + T S D A++W + + +++H P+ ++
Sbjct: 75 GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIH 134
Query: 323 WNKKGDY--LLTGSCDKTAIVWDVKT 346
W K +Y ++TGS DKT WD ++
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTRS 160
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
H G V V W GS + + S D TAK+W++ ++ + + +H + TI W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHW 135
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 74/196 (37%), Gaps = 31/196 (15%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
G LAT S D +I+ G+ L TL+ H+GP++ + W K G L + S D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 341 VWDVKTEEWKQ--QFEFHSGPTLDVDWRNNVS---FATSSTDNMIYVCKIGEN---RPIK 392
+W + W Q HS V W + +S+D + V + EN PI
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI- 139
Query: 393 TFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNMKQDK--YVHD-- 435
H VN W P + D KIW D YV +
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 436 LREHSKEIYTIRWSPT 451
L HS + + WSPT
Sbjct: 200 LEGHSDWVRDVAWSPT 215
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 40/180 (22%)
Query: 286 GTLLATGSYDGQARIWS-TNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 339
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 340 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 378
+V E+K+ + H+ W + + F T DN
Sbjct: 127 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 379 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDK 431
++ + K + T GH V V W PT S LAS S D T IW ++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 209 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-------EQGPWKKTLLKE 250
Query: 266 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 304
EK DV W+ G +LA D + +W N
Sbjct: 251 ------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 74/196 (37%), Gaps = 31/196 (15%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
G LAT S D +I+ G+ L TL+ H+GP++ + W K G L + S D +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 341 VWDVKTEEWKQ--QFEFHSGPTLDVDWRNNVS---FATSSTDNMIYVCKIGEN---RPIK 392
+W + W Q HS V W + +S+D + V + EN PI
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI- 141
Query: 393 TFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNMKQDK--YVHD-- 435
H VN W P + D KIW D YV +
Sbjct: 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201
Query: 436 LREHSKEIYTIRWSPT 451
L HS + + WSPT
Sbjct: 202 LEGHSDWVRDVAWSPT 217
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 40/180 (22%)
Query: 286 GTLLATGSYDGQARIWS-TNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 339
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 340 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 378
+V E+K+ + H+ W + + F T DN
Sbjct: 129 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 182
Query: 379 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDK 431
++ + K + T GH V V W PT S LAS S D T IW ++
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 209 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-------EQGPWKKTLLK- 251
Query: 266 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 304
EK DV W+ G +LA D + +W N
Sbjct: 252 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 74/196 (37%), Gaps = 31/196 (15%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
G LAT S D +I+ G+ L TL+ H+GP++ + W K G L + S D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 341 VWDVKTEEWKQ--QFEFHSGPTLDVDWRNNVS---FATSSTDNMIYVCKIGEN---RPIK 392
+W + W Q HS V W + +S+D + V + EN PI
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI- 139
Query: 393 TFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNMKQDK--YVHD-- 435
H VN W P + D KIW D YV +
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 436 LREHSKEIYTIRWSPT 451
L HS + + WSPT
Sbjct: 200 LEGHSDWVRDVAWSPT 215
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 40/180 (22%)
Query: 286 GTLLATGSYDGQARIWS-TNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 339
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 340 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 378
+V E+K+ + H+ W + + F T DN
Sbjct: 127 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 379 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDK 431
++ + K + T GH V V W PT S LAS S D T IW ++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 209 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-------EQGPWKKTLLK- 249
Query: 266 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 304
EK DV W+ G +LA D + +W N
Sbjct: 250 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 7/145 (4%)
Query: 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD 377
+ S+KW+ G +L G + ++DV+++ + H + W +V + S +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437
+ + N I T GH EV + W G LAS +D +IW+ +
Sbjct: 197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT 256
Query: 438 EHSKEIYTIRWSP-------TGSGT 455
H+ + + W P TG GT
Sbjct: 257 NHNAAVKAVAWCPWQSNLLATGGGT 281
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 20/158 (12%)
Query: 202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
I N + L+GH+SEVC AW D+ +IW D S+
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW---DARSS----------- 249
Query: 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLAT--GSYDGQARIWSTNGDLKCTLSKHKGPIF 319
+ K K N K V W + LLAT G+ D Q W+ + +
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPW--QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307
Query: 320 SLKWNKKGDYLLT--GSCDKTAIVWDVKTEEWKQQFEF 355
SL W+ +++ G D +W + +Q +
Sbjct: 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 252 GAQNGPL---NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL- 307
G+++G + +V + H G S +V L W +G LA+G D +IW +
Sbjct: 192 GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP 251
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLT---GSCDKTAIVWDVKT 346
K T + H + ++ W LL G+ DK W+ T
Sbjct: 252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 73/196 (37%), Gaps = 31/196 (15%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
G +AT S D +I+ G+ L TL+ H+GP++ + W K G L + S D +
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 341 VWDVKTEEWKQ--QFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGEN---RPIK 392
+W + W Q HS V W +S+D + V + EN PI
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI- 139
Query: 393 TFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNMKQDK--YVHD-- 435
H VN W P + D KIW D YV +
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 436 LREHSKEIYTIRWSPT 451
L HS + + WSPT
Sbjct: 200 LEGHSDWVRDVAWSPT 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 40/180 (22%)
Query: 286 GTLLATGSYDGQARIWS-TNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 339
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 340 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 378
+V E+K+ + H+ W + + F T DN
Sbjct: 127 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 379 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDK 431
++ + K + T GH V V W PT S +AS S D T IW ++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 209 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN-------EQGPWKKTLLK- 249
Query: 266 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 304
EK DV W+ G +LA D + +W N
Sbjct: 250 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 356 HSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGE-------NRPIKTFAGHQGEVNCVKW 406
H+ P LD+ W N+ A+ S D + V +I + P+ T GH V V W
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 407 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGS 453
PT ++L S D +W++ V L H IY++ WS G+
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 205 NSDVTILEGHTSEVCACAWSPXX-XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVL 263
+ +V ++ GHT+ V AW P D T +W I DG VL L
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGL----------VLPL 120
Query: 264 KHVKGRTNEKSKDVTTLDWN--GEGTLLATGSYDGQARIWST-NGDLKCTLSK--HKGPI 318
+ +K V + W+ + LL+ G D +W G TL H I
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGX-DNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 319 FSLKWNKKGDYLLTGSCDKTAIV 341
+S+ W++ G + T DK V
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRV 202
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 32/190 (16%)
Query: 208 VTILEGHTSEVCACAWSPXXXXXXXXX-XDSTARIWTIADGTSNGGAQNGPLNVLVLKHV 266
V LEGHT V AW P D+ +W + G + VL L
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAA----------VLTLG-- 171
Query: 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR-IWSTNGDLKCTLSK-HKG--PIFSLK 322
+ + ++DW+ +G L+ T D + R I G + + H+G P+ ++
Sbjct: 172 ---PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV- 227
Query: 323 WNKKGDYLLTG---SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-N 378
+ +G L TG ++ +WD K E + ++D + V D N
Sbjct: 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-------ELDTSSGVLLPFFDPDTN 280
Query: 379 MIYVCKIGEN 388
++Y+C G++
Sbjct: 281 IVYLCGKGDS 290
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 356 HSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGE-------NRPIKTFAGHQGEVNCVKW 406
H+ P LD+ W N+ A+ S D + V +I + P+ T GH V V W
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 407 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGS 453
PT ++L S D +W++ V L H IY++ WS G+
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 205 NSDVTILEGHTSEVCACAWSPXX-XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVL 263
+ +V ++ GHT+ V AW P D T +W I DG VL L
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL----------VLPL 120
Query: 264 KHVKGRTNEKSKDVTTLDWN--GEGTLLATGSYDGQARIWST-NGDLKCTLSK--HKGPI 318
+ +K V + W+ + LL+ G D +W G TL H I
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-DNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 319 FSLKWNKKGDYLLTGSCDKTAIV 341
+S+ W++ G + T DK V
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRV 202
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 288 LLATGSYDGQARIWST-NGDLK-------CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKT 338
++A+GS D +W +G L TL H + + W+ + LL+ CD
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 339 AIVWDVKTEEWKQQF--EFHSGPTLDVDW-RNNVSFATSSTDNMIYV 382
+VWDV T + H VDW R+ TS D + V
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 32/190 (16%)
Query: 208 VTILEGHTSEVCACAWSPXXXXXXXXXX-DSTARIWTIADGTSNGGAQNGPLNVLVLKHV 266
V LEGHT V AW P D+ +W + G + VL L
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----------VLTLG-- 171
Query: 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR-IWSTNGDLKCTLSK-HKG--PIFSLK 322
+ + ++DW+ +G L+ T D + R I G + + H+G P+ ++
Sbjct: 172 ---PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV- 227
Query: 323 WNKKGDYLLTG---SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-N 378
+ +G L TG ++ +WD K E + ++D + V D N
Sbjct: 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-------ELDTSSGVLLPFFDPDTN 280
Query: 379 MIYVCKIGEN 388
++Y+C G++
Sbjct: 281 IVYLCGKGDS 290
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 69/196 (35%), Gaps = 31/196 (15%)
Query: 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 340
G AT S D +I+ G+ L TL+ H+GP++ + W K G L + S D
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 341 VWDVKTEEWKQ--QFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGEN---RPIK 392
+W + W Q HS V W +S+D + V + EN PI
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPI- 139
Query: 393 TFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNMKQDKYVH----D 435
H VN W P + D KIW D +
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 436 LREHSKEIYTIRWSPT 451
L HS + + WSPT
Sbjct: 200 LEGHSDWVRDVAWSPT 215
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 40/180 (22%)
Query: 286 GTLLATGSYDGQARIWS-TNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 339
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVS 126
Query: 340 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 378
+V E+K+ + H+ W + + F T DN
Sbjct: 127 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 379 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQDK 431
++ + K + T GH V V W PT S AS S D T IW ++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQ 240
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 209 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDN-------EQGPWKKTLLK- 249
Query: 266 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 304
EK DV W+ G +LA D + +W N
Sbjct: 250 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 33/195 (16%)
Query: 284 GEGTLLATGSYDGQARIWSTNGDLK---CT--LSKHKGPIFSLKW--NKKGDYLLTGSCD 336
G +L +GS D R+W D+K CT H + L K Y++TGS D
Sbjct: 171 AHGGILVSGSTDRTVRVW----DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226
Query: 337 KTAIVWDV--------KTEEWKQQFEFHS---GPTLDVDWRNNVS-----------FATS 374
T VW + EE FH+ P R +++ +
Sbjct: 227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 286
Query: 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434
S DN + V + + + + +GH + +D S S D T +IW+++ + ++
Sbjct: 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346
Query: 435 DLREHSKEIYTIRWS 449
L+ H+ + +R S
Sbjct: 347 TLQGHTALVGLLRLS 361
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 283 NGEGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340
+G G ++ +GSYD +W +KC LS H I+S ++ + ++ S D T
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDV-AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 341 VWDVKTEEWKQQFEFHSG 358
+WD++ E + H+
Sbjct: 336 IWDLENGELMYTLQGHTA 353
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
+Y++TG+ DK V+D +++ Q H G + + + + STD + V I +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSL--LASCSDDVTAKIWNMKQDKYVHD 435
F GH V C+ ++ + + S D T +W + ++ V D
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 35/196 (17%)
Query: 284 GEGTLLATGSYDGQARIWSTNGDLK---CT--LSKHKGPIFSLKW--NKKGDYLLTGSCD 336
G +L +GS D R+W D+K CT H + L K Y++TGS D
Sbjct: 171 AHGGILVSGSTDRTVRVW----DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226
Query: 337 KTAIVWDV--------KTEEWKQQFEFHS---------------GPTLDVDWRNNVSFAT 373
T VW + EE FH+ V N+ +
Sbjct: 227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNI-VVS 285
Query: 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433
S DN + V + + + + +GH + +D S S D T +IW+++ +
Sbjct: 286 GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELX 345
Query: 434 HDLREHSKEIYTIRWS 449
+ L+ H+ + +R S
Sbjct: 346 YTLQGHTALVGLLRLS 361
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
+Y++TG+ DK V+D +++ Q H G + + + + STD + V I +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSL--LASCSDDVTAKIWNMKQDKYVHD 435
F GH V C+ ++ + + S D T +W + ++ V D
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 283 NGEGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340
+G G ++ +GSYD +W KC LS H I+S ++ + ++ S D T
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDV-AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 341 VWDVKTEEWKQQFEFHSG 358
+WD++ E + H+
Sbjct: 336 IWDLENGELXYTLQGHTA 353
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 33/199 (16%)
Query: 286 GTLLATGSYDGQARIWST-NGD--LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAI 340
GT LAT S D +I+ NG L L H+GP++ + W G+ L + S D+ I
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 341 VWDVKTEEWKQQFEF--HSGPTLDVDWRNN---VSFATSSTDNMIYVCKI---GENRPIK 392
+W + W++ E H V W + + A S+D I + G+ K
Sbjct: 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Query: 393 TFAGHQGEVNCVKWDPT---GSLL--------------ASCSDDVTAKIWNMKQD---KY 432
H N V W P GSL+ AS D K+W ++D K
Sbjct: 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204
Query: 433 VHDLREHSKEIYTIRWSPT 451
L HS + + W+P+
Sbjct: 205 EQKLEAHSDWVRDVAWAPS 223
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 34/199 (17%)
Query: 282 WNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
WN + T +A + + I+ +G+ L +H G + + W + ++T D+
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN 75
Query: 339 AIVWDVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE-------- 387
A VW +K WK + V W N FA S +I +C +
Sbjct: 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 388 --NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
+PI++ V + W P LLA+ S D +I++ Y+ ++ E
Sbjct: 136 HIKKPIRS------TVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEE------- 178
Query: 446 IRWSPTGSGTNNPNQQLIL 464
R +PT G+ P +L+
Sbjct: 179 -RPAPTPWGSKMPFGELMF 196
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
V KH+K V +LDW+ LLA GS D + RI+S
Sbjct: 133 VCKHIKKPIRST---VLSLDWHPNSVLLAAGSCDFKCRIFSA 171
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVL----KHV 266
L+ H +V W+P D A +WT+ G L +L + + V
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTL-----KGRTWKPTLVILRINRAARCV 102
Query: 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK 326
+ NEK V G G+ + + Y Q W +K + + + SL W+
Sbjct: 103 RWAPNEKKFAV------GSGSRVISICYFEQENDWWVCKHIKKPI---RSTVLSLDWHPN 153
Query: 327 GDYLLTGSCDKTAIVWDVKTEE 348
L GSCD ++ +E
Sbjct: 154 SVLLAAGSCDFKCRIFSAYIKE 175
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 34/199 (17%)
Query: 282 WNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
WN + T +A + + I+ +G+ L +H G + + W + ++T D+
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75
Query: 339 AIVWDVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE-------- 387
A VW +K WK + V W N FA S +I +C +
Sbjct: 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 388 --NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
+PI++ V + W P LLA+ S D +I++ Y+ ++ E
Sbjct: 136 HIKKPIRS------TVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEE------- 178
Query: 446 IRWSPTGSGTNNPNQQLIL 464
R +PT G+ P +L+
Sbjct: 179 -RPAPTPWGSKMPFGELMF 196
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
V KH+K V +LDW+ LLA GS D + RI+S
Sbjct: 133 VCKHIKKPIRST---VLSLDWHPNSVLLAAGSCDFKCRIFSA 171
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 211 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVL----KHV 266
L+ H +V W+P D A +WT+ G L +L + + V
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL-----KGRTWKPTLVILRINRAARCV 102
Query: 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK 326
+ NEK V G G+ + + Y Q W +K + + + SL W+
Sbjct: 103 RWAPNEKKFAV------GSGSRVISICYFEQENDWWVCKHIKKPI---RSTVLSLDWHPN 153
Query: 327 GDYLLTGSCDKTAIVWDVKTEE 348
L GSCD ++ +E
Sbjct: 154 SVLLAAGSCDFKCRIFSAYIKE 175
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 371 FATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
F T++ N + + + N + +TF+ H V CV W P + + +CS D A ++ +
Sbjct: 26 FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85
Query: 429 QD---KYVHDLREHSKEIYTIRWSP 450
D K L ++ +RWSP
Sbjct: 86 PDGTWKQTLVLLRLNRAATFVRWSP 110
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 282 WNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
+N + T T + Q ++ +G+ T S H + + W K + ++T S D+
Sbjct: 19 FNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN 78
Query: 339 AIVWDVKTE-EWKQQ---FEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE------ 387
A V++ + + WKQ + T V W N FA S +I VC +
Sbjct: 79 AYVYEKRPDGTWKQTLVLLRLNRAATF-VRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137
Query: 388 ----NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436
RP+++ + + W P LLA+ D A + YV D+
Sbjct: 138 SKHLKRPLRS------TILSLDWHPNNVLLAAGCADRKAYV----LSAYVRDV 180
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----TLDVDWRNNVSFAT 373
I S K G L+ G T +WD+ + + E S L + + V F+
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433
S D I V + ++ F GH +C+ G+ L + D T + W++++ +
Sbjct: 160 CS-DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-- 216
Query: 434 HDLREH--SKEIYTIRWSPTG 452
L++H + +I+++ + PTG
Sbjct: 217 -QLQQHDFTSQIFSLGYCPTG 236
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 285 EGTLLATGSYDGQARIW---STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341
+G L G IW + +K L+ ++L + + D V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 342 WDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400
WD+ + +QF+ H+ +D N+ T DN + + E R ++ +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQ 226
Query: 401 VNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKYVHDLREHSKEIYTIRWSPTG 452
+ + + PTG LA + ++ ++ K DKY L H + +++++ G
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCG 277
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
Query: 259 NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
N +++ +G T+ S +D + +GT L TG D R W + I
Sbjct: 172 NQTLVRQFQGHTDGAS----CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTD 377
FSL + G++L G V V + K Q H L + + F ++ D
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 378 NMI 380
N++
Sbjct: 287 NLL 289
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 314 HKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDW 365
H+ + +++W + T S DKT VWD T + F F H P
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST--- 154
Query: 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKI 424
+ A + + +C + GH+ E+ V W P +LA+ S D K+
Sbjct: 155 -KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 425 WNMKQ 429
W++++
Sbjct: 214 WDVRR 218
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 26/124 (20%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362
+G L H+ I ++ W+ + DY+L T S D +WDV+ SG +
Sbjct: 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA---------SGCLIT 225
Query: 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
+D N + N H G+VN + + G L + D
Sbjct: 226 LDQHNGKKSQAVESAN----------------TAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 423 KIWN 426
++WN
Sbjct: 270 RLWN 273
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 180 VLQGEKGP--EPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX-XXXXXXXXD 236
V G +GP + D+ + S S IL+GH E+ A +WSP D
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSH----------ILQGHRQEILAVSWSPRYDYILATASAD 208
Query: 237 STARIWTIADGTS---NGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293
S ++W + + NG + + V+ + V L + +G L T
Sbjct: 209 SRVKLWDVRRASGCLITLDQHNGKKS----QAVESANTAHNGKVNGLCFTSDGLHLLTVG 264
Query: 294 YDGQARIW-STNGD 306
D + R+W S+NG+
Sbjct: 265 TDNRMRLWNSSNGE 278
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 55/298 (18%), Positives = 96/298 (32%), Gaps = 60/298 (20%)
Query: 158 HPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSE 217
HPD +V E V P + G+ + + + T+ ++ ++ N + T+ H S
Sbjct: 94 HPDVHRYSV--ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSP 151
Query: 218 VCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277
V + + +A GT Q L H+ +++
Sbjct: 152 V-------------------STKHCLVAVGTRGPKVQLCDLKSGSCSHI---LQGHRQEI 189
Query: 278 TTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTL-----------------SKHKGPIF 319
+ W+ +LAT S D + ++W C + + H G +
Sbjct: 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249
Query: 320 SLKWNKKGDYLLTGSCDKTAIVWDVKTEE------------WKQQFEFHSGPTLDVDWRN 367
L + G +LLT D +W+ E K+ +F T+ +
Sbjct: 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF----TVSCGCSS 305
Query: 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
F + +Y GE I GH V+C + L S S D W
Sbjct: 306 EFVFVPYGSTIAVYTVYSGEQ--ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 315 KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT----EEWKQQFEFHSGPTLDVDWRNNVS 370
+G IF+L W + G+ D T VWDV T ++W + + V N
Sbjct: 253 QGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 408
+ S D + ++G + +KT +GH + + +P
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----LDVDWRNNVSFATSSTDNMIYV 382
G++++T D+ +D K+ E+ + E P + W ++ FAT D I V
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 278
Query: 383 CKIGENRPIK--TFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREH 439
+ ++ ++ T Q V TG+ + S S D T + + D+ + + H
Sbjct: 279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGH 338
Query: 440 SKEIYTIRWSPTGSGT 455
+K I + +P SG+
Sbjct: 339 NKGITALTVNPLISGS 354
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 315 KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT----EEWKQQFEFHSGPTLDVDWRNNVS 370
+G IF+L W + G+ D T VWDV T ++W + + V N
Sbjct: 253 QGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 408
+ S D + ++G + +KT +GH + + +P
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----LDVDWRNNVSFATSSTDNMIYV 382
G++++T D+ +D K+ E+ + E P + W ++ FAT D I V
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 278
Query: 383 CKIGENRPIK--TFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREH 439
+ ++ ++ T Q V TG+ + S S D T + + D+ + + H
Sbjct: 279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGH 338
Query: 440 SKEIYTIRWSPTGSGT 455
+K I + +P SG+
Sbjct: 339 NKGITALTVNPLISGS 354
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 85/198 (42%), Gaps = 29/198 (14%)
Query: 280 LDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLL-TG 333
LDW+ ++A +G ++STN + S H + ++K+N K D +L +G
Sbjct: 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG 132
Query: 334 SCDKTAIVWDVK--TEEWKQQFEFHSGPTL-------DVDWRNNVS--FATSSTDNMIYV 382
+ +WD+ TE G ++ + W +++ FA++ + N +
Sbjct: 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192
Query: 383 CKIGENRPIKTF------AGHQGEVNCVKWDPTGSLLASCS----DDVTAKIWNMKQ-DK 431
+ + + +G + +++ V+W P S + + +D + IW+++ +
Sbjct: 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252
Query: 432 YVHDLRE-HSKEIYTIRW 448
+ L + H K I ++ W
Sbjct: 253 PLQTLNQGHQKGILSLDW 270
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 275 KDVTTLDW---NGEGTLLATGS-YDGQARIW---STNGDLKCTLSKHKGPIFSLKWNKKG 327
+ ++ ++W N ATGS D IW + N L+ H+ I SL W +
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 328 DYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 386
++LL S D T ++W+ ++ E QF +W FA + D ++ C
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARG------NWCFKTKFAPEAPD--LFACASF 326
Query: 387 ENR 389
+N+
Sbjct: 327 DNK 329
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
H GEV V W+ TG++L+S DD ++W
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 277 VTTLDWNGE--GTLLATGSYDGQARIWSTNGDLK----------CTLSKHKGPIFSLKW 323
+ +DW G ++A+ SYD ++W + D + CTL+ KG ++S+K+
Sbjct: 58 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF 116
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWST--NGDLKC 309
+V ++ WN GT+L++ DG+ R+W + + KC
Sbjct: 306 EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 341
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 450
+GH V+ V +D G +A+CS D K++ + +D +L R H I I W+
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 451 TGSG 454
G
Sbjct: 66 PEYG 69
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
H GEV V W+ TG++L+S DD ++W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 277 VTTLDWNGE--GTLLATGSYDGQARIWSTNGDLK----------CTLSKHKGPIFSLKW 323
+ +DW G ++A+ SYD ++W + D + CTL+ KG ++S+K+
Sbjct: 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF 118
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWST--NGDLKC 309
+V ++ WN GT+L++ DG+ R+W + + KC
Sbjct: 308 EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 450
+GH V+ V +D G +A+CS D K++ + +D +L R H I I W+
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 451 TGSG 454
G
Sbjct: 68 PEYG 71
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
H GEV V W+ TG++L+S DD ++W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 12/58 (20%)
Query: 277 VTTLDWNGE--GTLLATGSYDGQARIWSTNGDLK----------CTLSKHKGPIFSLK 322
+ +DW G ++A+ SYD ++W + D + CTL+ KG ++S+K
Sbjct: 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVK 117
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWST--NGDLKC 309
+V ++ WN GT+L++ DG+ R+W + + KC
Sbjct: 308 EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWS 449
+GH V+ V +D G +A+CS D K++ + +D +L R H I I W+
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK 337
+LD + ++ TG G + + +G L HK + + N D+ L T S D+
Sbjct: 214 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 338 TAIVWDVKTEEWKQQFEF 355
T +WD++ K F +
Sbjct: 274 TVKIWDLRQVRGKASFLY 291
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK 337
+LD + ++ TG G + + +G L HK + + N D+ L T S D+
Sbjct: 214 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 338 TAIVWDVKTEEWKQQFEF 355
T +WD++ K F +
Sbjct: 274 TVKIWDLRQVRGKASFLY 291
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 51/174 (29%)
Query: 200 SFEIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGA------ 253
+FE P I +G V C W P +A+ T+ + G
Sbjct: 3 AFEKPQIIAHIQKGFNYTVFDCKWVP-----------CSAKFVTMGNFARGTGVIQLYEI 51
Query: 254 QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG---EGTLLATGSYDGQARIWSTNGDLKCT 310
Q+G L +L R EK+K + + + LATG + G IW+
Sbjct: 52 QHGDLKLL-------REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN-------- 96
Query: 311 LSKHKGPIFSLKWNKK----------------GDYLLTGSCDKTAIVWDVKTEE 348
L + P++S+K +K+ ++TGS D T VWD + ++
Sbjct: 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 42/106 (39%)
Query: 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV 382
+ K G +L D +++ + + + +D F +T+ I V
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 123
Query: 383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
N + H E+ +K+ P+G L S S D+ KIW++K
Sbjct: 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK 337
+LD + ++ TG G + + +G L HK + + N D+ L T S D+
Sbjct: 215 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 274
Query: 338 TAIVWDVKTEEWKQQFEF 355
T +WD++ K F +
Sbjct: 275 TVKIWDLRQVRGKASFLY 292
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 42/106 (39%)
Query: 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV 382
+ K G +L D +++ + + + +D F +T+ I V
Sbjct: 61 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 120
Query: 383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
N + H E+ +K+ P+G L S S D+ KIW++K
Sbjct: 121 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
>pdb|3P53|A Chain A, Structure Of Fascin
pdb|3P53|B Chain B, Structure Of Fascin
Length = 496
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 28/146 (19%)
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 366
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 307 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 361
Query: 367 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----- 418
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S
Sbjct: 362 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRSSYDVFQ 418
Query: 419 -----------DVTAKIWNMKQDKYV 433
D T K W + D V
Sbjct: 419 LEFNDGAYNIKDSTGKYWTVGSDSAV 444
>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant
pdb|4GOY|B Chain B, The Crystal Structure Of Human Fascin 1 K41a Mutant
Length = 493
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 28/146 (19%)
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 366
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 358
Query: 367 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----- 418
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRSSYDVFQ 415
Query: 419 -----------DVTAKIWNMKQDKYV 433
D T K W + D V
Sbjct: 416 LEFNDGAYNIKDSTGKYWTVGSDSAV 441
>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|3LLP|A Chain A, 1.8 Angstrom Human Fascin 1 Crystal Structure
pdb|3LLP|B Chain B, 1.8 Angstrom Human Fascin 1 Crystal Structure
Length = 493
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 28/146 (19%)
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 366
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 358
Query: 367 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----- 418
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRSSYDVFQ 415
Query: 419 -----------DVTAKIWNMKQDKYV 433
D T K W + D V
Sbjct: 416 LEFNDGAYNIKDSTGKYWTVGSDSAV 441
>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
pdb|4GP0|B Chain B, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
Length = 493
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 28/146 (19%)
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 366
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 358
Query: 367 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----- 418
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRSSYDVFQ 415
Query: 419 -----------DVTAKIWNMKQDKYV 433
D T K W + D V
Sbjct: 416 LEFNDGAYNIKDSTGKYWTVGSDSAV 441
>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant
pdb|4GOV|B Chain B, The Crystal Structure Of Human Fascin 1 S39d Mutant
Length = 493
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 28/146 (19%)
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 366
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 358
Query: 367 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----- 418
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRSSYDVFQ 415
Query: 419 -----------DVTAKIWNMKQDKYV 433
D T K W + D V
Sbjct: 416 LEFNDGAYNIKDSTGKYWTVGSDSAV 441
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK 431
D + V + + +K++ H EVNCV P ++ SC +D +W+ ++ K
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant
pdb|4GP3|B Chain B, The Crystal Structure Of Human Fascin 1 K358a Mutant
Length = 493
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 28/146 (19%)
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 366
KC H G ++L G T S + +D+ EW+ ++ + V
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSA 358
Query: 367 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----- 418
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRSSYDVFQ 415
Query: 419 -----------DVTAKIWNMKQDKYV 433
D T K W + D V
Sbjct: 416 LEFNDGAYNIKDSTGKYWTVGSDSAV 441
>pdb|2Y4F|A Chain A, X-Ray Crystallographic Structure Of E. Coli Heme-Efeb
pdb|2Y4F|B Chain B, X-Ray Crystallographic Structure Of E. Coli Heme-Efeb
Length = 392
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 408 PTGSLLAS-CSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTG 452
P SL A+ C DV +I QD +H LR+ H+ ++ ++RW G
Sbjct: 133 PNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREG 181
>pdb|3O72|A Chain A, Crystal Structure Of Efeb In Complex With Heme
pdb|3O72|B Chain B, Crystal Structure Of Efeb In Complex With Heme
pdb|3O72|C Chain C, Crystal Structure Of Efeb In Complex With Heme
pdb|3O72|D Chain D, Crystal Structure Of Efeb In Complex With Heme
Length = 396
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 408 PTGSLLAS-CSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTG 452
P SL A+ C DV +I QD +H LR+ H+ ++ ++RW G
Sbjct: 129 PNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREG 177
>pdb|2Y4D|A Chain A, X-Ray Crystallographic Structure Of E. Coli Apo-Efeb
pdb|2Y4D|B Chain B, X-Ray Crystallographic Structure Of E. Coli Apo-Efeb
pdb|2Y4E|A Chain A, X-Ray Crystallographic Structure Of E. Coli Ppix-Efeb
pdb|2Y4E|B Chain B, X-Ray Crystallographic Structure Of E. Coli Ppix-Efeb
Length = 403
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 408 PTGSLLAS-CSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTG 452
P SL A+ C DV +I QD +H LR+ H+ ++ ++RW G
Sbjct: 144 PNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREG 192
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 362 DVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGE--VNCVKWDPTGSLLASCS 417
D+ W +S + + ++ EN + F ++ + V+ V +G+ S S
Sbjct: 87 DLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS 146
Query: 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
D+ K+W++ Q + R H+ ++ + SP
Sbjct: 147 KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 288 LLATGSYDGQARIWST-NGDLKCTLSK-HKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDV 344
++ATG DG IW G + +L K H+ ++ + ++ ++L T S D + WD
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDA 310
Query: 345 KTEEWKQQFEFHSG 358
T+ ++ FH G
Sbjct: 311 STDVPEKSSLFHQG 324
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 375 STDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431
S D+ + + I + + F G H+ EV +D G + SC D + K+W + +
Sbjct: 130 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 189
Query: 432 YVHDLRE 438
++ ++E
Sbjct: 190 MMNAIKE 196
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 375 STDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431
S D+ + + I + + F G H+ EV +D G + SC D + K+W + +
Sbjct: 171 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 230
Query: 432 YVHDLRE 438
++ ++E
Sbjct: 231 MMNAIKE 237
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 375 STDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431
S D+ + + I + + F G H+ EV +D G + SC D + K+W + +
Sbjct: 134 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 193
Query: 432 YVHDLRE 438
++ ++E
Sbjct: 194 MMNAIKE 200
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 375 STDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431
S D+ + + I + + F G H+ EV +D G + SC D + K+W + +
Sbjct: 135 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 194
Query: 432 YVHDLRE 438
++ ++E
Sbjct: 195 MMNAIKE 201
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 375 STDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431
S D+ + + I + + F G H+ EV +D G + SC D + K+W + +
Sbjct: 134 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 193
Query: 432 YVHDLRE 438
++ ++E
Sbjct: 194 MMNAIKE 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,609,346
Number of Sequences: 62578
Number of extensions: 660478
Number of successful extensions: 2148
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 492
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)