BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010755
(502 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/506 (41%), Positives = 317/506 (62%), Gaps = 52/506 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VP F E A I+EEELG P+ ++ FD P+AAASLGQVH+A+L GE+VVVKV
Sbjct: 124 LQDEVPAFSYEQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVVVKV 183
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
QRPGLK LF IDL L+ IA+Y Q PK G RDW IY+EC +L+QE DY +E +
Sbjct: 184 QRPGLKKLFTIDLAILKKIAQYFQN-HPKW-GRGRDWNGIYEECCKILWQETDYLREGRS 241
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A+ F NF+ D+VKVP ++W YT+ QILT+EY+PGIKI+ +L+ G++RK L +
Sbjct: 242 ADTFRRNFRGEDWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGA 301
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE 239
+YL Q+L+HGFFHADPHPGN+AV G LIFYDFGMMG I+P+ + L++ +G+ E
Sbjct: 302 RAYLFQLLNHGFFHADPHPGNLAVSP-EAGELIFYDFGMMGEITPDTKNKLMDTLFGVAE 360
Query: 240 KDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPL 299
K+A++++ ++V +G L T D +RR+ QF L++F + KP
Sbjct: 361 KNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMD-------------------KPF 401
Query: 300 SKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITE 359
++Q + I +DL IA DQPFRFPATFTFV+RAFS L+G+GKGLDP F+
Sbjct: 402 --------EEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFMA 453
Query: 360 IAKPYAMELLK----FREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLE 415
+A+P+A++++ F AG + + RQ N R ++ +++ RL+
Sbjct: 454 VAQPFALQIMNNSNGFNPAG------NIMDELGRQAVQVGNSALGLPR--RIEDSLDRLD 505
Query: 416 QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSIRVPA---ILAYV 472
+GD+++RVR+ E++R +R+ +Q + +LV AT+L++N+ + A +L +
Sbjct: 506 RGDIRVRVRSTETDRLLRRMGTMQMGTNYVLFTCALVLSATLLFVNNYFMAAAVVLLMSL 565
Query: 473 SCAFFGFQVLFGIIKVKKLDQREKLI 498
AF +++L K+L++++++
Sbjct: 566 VPAFALWRLL------KRLERQDRMF 585
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/463 (35%), Positives = 271/463 (58%), Gaps = 40/463 (8%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKV 59
+QD+VPPF S A++++E+EL +D++F++F+V P+A+ASLGQVHRA L GE VVVKV
Sbjct: 97 LQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVLPTGEAVVVKV 156
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDP--KSDGAKRDWVAIYDECASVLYQEIDYTQEA 117
QRPGL L ++D + L ++ P + K + AIY E S+L+ EIDY E
Sbjct: 157 QRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEG 216
Query: 118 ANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRY 177
NAE F NF D V+VP I+W+YTT +LT+EY+PGIK++ Q+L+ G++ + +
Sbjct: 217 KNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQT 276
Query: 178 AVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
+ +YL+Q+L GFF +DPHPGN+AVD + G LIFYDFG M + ++ +++ F+ +
Sbjct: 277 GICAYLKQLLVDGFFQSDPHPGNMAVD--SQGDLIFYDFGTMAEVKIIAKDQMVQTFFAV 334
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
KD ++VL+A++ MG++ P GD + ++R F L++F + K
Sbjct: 335 LRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRD-------------------K 375
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
P+ I+ Q +GE++ A+ QPFR P TF++++ S LDGI + LDPR+++
Sbjct: 376 PID----IKAFDQ----VGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNL 427
Query: 358 TEIAKPY--AMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAETIQRLE 415
++P+ ++ + + + + +L+ + A L R + + L E +LE
Sbjct: 428 IAASQPFIQSITVAQPKRSLAMALLQQVKQ------FALDQLNRPSRNQQFLQELAAKLE 481
Query: 416 QGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATIL 458
+G+L+ R+ E +R +++ K++ A G + AT+L
Sbjct: 482 RGELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTLLSATVL 524
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/410 (36%), Positives = 225/410 (54%), Gaps = 47/410 (11%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QDQ+P FP+E A +EEELGAP ++++ EPIAAASLGQV++ +LK GE V VKV
Sbjct: 143 LQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAVKV 202
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
QRP L +D+ +R ++ + ++ + D VAI DE AS +++E++Y QEA N
Sbjct: 203 QRPDLVRRITLDIYIMRSLSLWARR---SVKRLRSDLVAITDELASRVFEEMNYYQEAIN 259
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
E FA + + + VP+I+W+YT ++LTME+V GIK+ I+++ G+D L V
Sbjct: 260 GEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGV 319
Query: 180 ESYLEQILSHGFFHADPHPGN-IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 238
+ L Q+L HGFFHADPHPGN +A+ D GRL + DFGMM +I P R GL+EA +
Sbjct: 320 QCSLRQLLEHGFFHADPHPGNLLAMAD---GRLAYLDFGMMSTIQPYQRYGLIEAVVHLV 376
Query: 239 EKDADKVLQAMVQMGVLVPTGDTTA-VRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+D D + + V++ L P D + Q F N+ +A EL FK
Sbjct: 377 NRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVA-----------ELNFK- 424
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
+I + + A+ + PFR PA + ++R+ L+GI G+DP F +
Sbjct: 425 ----------------SITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKV 468
Query: 358 TEIAKPYAMELL------KFREAGVEVILKDFRNRWDRQTRAFYNLFRQA 401
A PY + L + R + E++ K+ RW+R NL R A
Sbjct: 469 LSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNR----LENLLRNA 514
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 205/397 (51%), Gaps = 40/397 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKV 59
+QDQ+PPF ++ A ++EE+LG +D+ + P+AAASLGQV+RA L GEEV VKV
Sbjct: 109 LQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKV 168
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
QRP L+ +DL +R+ A+ + P + G D I DE L++EIDY E N
Sbjct: 169 QRPNLRPRLSLDLYLMRLGAQKFGRFLPLNLG--HDLTLIVDEFGIKLFEEIDYLNEGRN 226
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
AE FA NF VKVP I+W+Y+ ++LT+E++ G K+ + G+D + R V
Sbjct: 227 AEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGV 286
Query: 180 ESYLEQILSHGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 238
S L Q+L HGFFHADPHPGN+ A D GR+ + DFGMM + P +E + + +
Sbjct: 287 TSGLRQLLEHGFFHADPHPGNLFATLD---GRMAYIDFGMMDQLEPGTKETIASSIVQLI 343
Query: 239 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP 298
KD + + + +G L P D T + + N F + + Q+ FK
Sbjct: 344 NKDYLALTEDFIALGFLAPNTDITPIIPALE---NVFGSAIGQ-------SVQDFNFK-- 391
Query: 299 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT 358
I +D + D PFR PA F ++R+ +G+ LDP F I
Sbjct: 392 ---------------TITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIV 436
Query: 359 EIAKPYAMELL------KFREAGVEVILKDFRNRWDR 389
E+A PY L + R ++V+ K+ + +W R
Sbjct: 437 EVAYPYVARRLLTGESPQLRRQLIDVLFKNGKFQWQR 473
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 136/412 (33%), Positives = 209/412 (50%), Gaps = 46/412 (11%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVK 58
+QD +P FP A + +E EL L+ +F EPIAAASLGQV++A+L+ G+ V VK
Sbjct: 186 LQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVK 245
Query: 59 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 118
VQRPG+++ +D +R + + + K D D + + DE A +YQE++Y QEA
Sbjct: 246 VQRPGIEEAIGLDFYLIRGVGKLINKY---VDFITTDVLTLIDEFACRVYQELNYVQEAQ 302
Query: 119 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 178
NA F + D V VP IFW+YT+ ++LTME+V G K+N +++ G+ L
Sbjct: 303 NARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNTG 362
Query: 179 VESYLEQILSHGFFHADPHPGN-IAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
++ L Q+L +GFFHADPHPGN +A D G+L F DFGMM R ++ +
Sbjct: 363 IQCSLRQLLEYGFFHADPHPGNLLATPD---GKLAFLDFGMMSETPEEARFAIIGHVVHL 419
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+D + + + + L P D T + + F F++ L T EL FK
Sbjct: 420 VNRDYEAMARDYYALKFLSPDVDVTPIIPALRDF---FDDAL-------NYTVSELNFK- 468
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
+ + L A+ PF P + ++R+ +VL+G+ DP F +
Sbjct: 469 ----------------TLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKV 512
Query: 358 TEIAKPY-AMELLK-----FREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+ PY A LL R+A +E++ KD + RW+R NL +Q +
Sbjct: 513 LAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNR----LENLLQQGSK 560
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 195/366 (53%), Gaps = 43/366 (11%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVK 58
+QDQ+ PF +E A +++E+ELG P+D++F EP+AAASLGQV++ARL+ G+ V VK
Sbjct: 159 LQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVK 218
Query: 59 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 118
VQRPG++ +D LR IA ++ K+ D A+ DE A+ L++E+DY EA
Sbjct: 219 VQRPGVRAAIALDTLILRYIAGLIK----KAGRFNSDLEAVVDEWATSLFKEMDYLNEAQ 274
Query: 119 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 178
N F + + V VP ++ EY+T ++L ME+V G K+N + L L
Sbjct: 275 NGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLVEVG 326
Query: 179 VESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIY 238
V Q+L +GF+HADPHPGN G+L + DFGMMG P +R+G +EA +
Sbjct: 327 VYCSFNQLLEYGFYHADPHPGNFL--RTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLV 384
Query: 239 EKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKP 298
+D + + V +G+L PT + +AV + + F++ A R R I+ +L
Sbjct: 385 NRDFKALAKDFVTLGLLPPTAEKSAVTKA---LTDVFQD--AISRGVRNISFGDL----- 434
Query: 299 LSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDIT 358
L +G+ + FR P F+ V+R+ +VL+GI G+ P + +
Sbjct: 435 -------------LGDLGKTMYRFK----FRIPPYFSLVIRSLAVLEGIAIGISPNYKVL 477
Query: 359 EIAKPY 364
P+
Sbjct: 478 GSTYPW 483
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 198/398 (49%), Gaps = 41/398 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK--GEEVVVK 58
+QD VPPFP+E A +I+EEELG PL+++F + + IAAASLGQV+RA L+ GE+V +K
Sbjct: 206 LQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIK 265
Query: 59 VQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAA 118
VQRP ++ + DL R +A +L + G + I DE L +E+DYT EA
Sbjct: 266 VQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCNAEL--IVDEFGEKLLEELDYTLEAR 323
Query: 119 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 178
N E F NFKD VK+P ++ P++L ME++ GI+ Q++ + G+D
Sbjct: 324 NIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLTVG 383
Query: 179 VESYLEQILSHGFFHADPHPGNI-AVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
V + L Q+L G FH DPHPGNI A+ D GR+ + DFG + +S ++ L++A
Sbjct: 384 VSAALRQLLEFGLFHGDPHPGNIFAMQD---GRIAYVDFGNVAVLSQQNKQILIDAVVHA 440
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+D ++ ++G L D + + + + + A R +T Q F K
Sbjct: 441 VNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQ---FNK 497
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
+ D P R P F+ V+R+ +GI L P F
Sbjct: 498 ------------------------LVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKF 533
Query: 358 TEIAKPYAMELL------KFREAGVEVILKDFRNRWDR 389
E+A PY + L RE ++V+ KD +W R
Sbjct: 534 LEVAYPYVAKRLLTDPNPALRERLIQVLFKDGVFQWKR 571
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 131/373 (35%), Positives = 203/373 (54%), Gaps = 43/373 (11%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK------GEE 54
+QD+VPPF + A +VE LG ++++F FD++P+A+AS+ QVH+A L+ G E
Sbjct: 88 LQDRVPPFDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGRE 147
Query: 55 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYT 114
V VKV RPG+ + + DL +R +A +++K+ +DG + + E L+ E+D
Sbjct: 148 VAVKVLRPGILPVIEQDLSLMRTLAGWVEKL--FADGKRLKPREVVAEFDKYLHDELDMM 205
Query: 115 QEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRL 174
EAANA NFK D + VP +F++Y++ ++LT+E++ GI + +I+ L E GVD ++L
Sbjct: 206 HEAANASQLRRNFKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKL 265
Query: 175 GRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAF 234
R+ VE + Q+ HGFFHAD HPGNI V GR I DFG++GS++ + L F
Sbjct: 266 SRFGVEIFFTQVFRHGFFHADMHPGNIFV--AADGRYIALDFGIVGSLTDTDKHYLAVNF 323
Query: 235 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 294
+ +D +V A ++ G VP DT A EE AA R T E
Sbjct: 324 LAFFNRDYHRVATAHIESG-WVPR-DTRA------------EELEAAVR-----TVCEPI 364
Query: 295 FKKPLSKEEKIEKKKQRLAAIGEDLLAI-AADQPFRFPATFTFVVRAFSVLD--GIGKGL 351
F+KPLS+ + G LL + + F V+ ++L+ G+G+ L
Sbjct: 365 FEKPLSE-----------ISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQL 413
Query: 352 DPRFDITEIAKPY 364
DP D+ + AKP+
Sbjct: 414 DPELDLWDTAKPF 426
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 244/488 (50%), Gaps = 69/488 (14%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+ V
Sbjct: 88 LQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQR 283
+ F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQV 380
Query: 284 KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV 343
R +T S+ +E + Q L + + +L +
Sbjct: 381 LMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV--------------------- 409
Query: 344 LDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R +
Sbjct: 410 -EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQ 467
Query: 404 VEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSI 463
R DL ++ L +R R+ G AVGAG+++
Sbjct: 468 ALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA---------- 515
Query: 464 RVPAILAY 471
RV +LAY
Sbjct: 516 RVLIVLAY 523
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 244/488 (50%), Gaps = 69/488 (14%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+ V
Sbjct: 88 LQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQR 283
+ F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQV 380
Query: 284 KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV 343
R +T S+ +E + Q L + + +L +
Sbjct: 381 LMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV--------------------- 409
Query: 344 LDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R +
Sbjct: 410 -EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQ 467
Query: 404 VEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSI 463
R DL ++ L +R R+ G AVGAG+++
Sbjct: 468 ALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA---------- 515
Query: 464 RVPAILAY 471
RV +LAY
Sbjct: 516 RVLIVLAY 523
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 244/488 (50%), Gaps = 69/488 (14%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+ V
Sbjct: 88 LQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQR 283
+ F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQV 380
Query: 284 KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV 343
R +T S+ +E + Q L + + +L +
Sbjct: 381 LMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV--------------------- 409
Query: 344 LDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R +
Sbjct: 410 -EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQ 467
Query: 404 VEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSI 463
R DL ++ L +R R+ G AVGAG+++
Sbjct: 468 ALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA---------- 515
Query: 464 RVPAILAY 471
RV +LAY
Sbjct: 516 RVLIVLAY 523
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 244/488 (50%), Gaps = 69/488 (14%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+ V
Sbjct: 88 LQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQR 283
+ F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQV 380
Query: 284 KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV 343
R +T S+ +E + Q L + + +L +
Sbjct: 381 LMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV--------------------- 409
Query: 344 LDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R +
Sbjct: 410 -EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQ 467
Query: 404 VEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSI 463
R DL ++ L +R R+ G AVGAG+++
Sbjct: 468 ALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA---------- 515
Query: 464 RVPAILAY 471
RV +LAY
Sbjct: 516 RVLIVLAY 523
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 244/488 (50%), Gaps = 69/488 (14%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+ V
Sbjct: 88 LQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQR 283
+ F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQV 380
Query: 284 KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV 343
R +T S+ +E + Q L + + +L +
Sbjct: 381 LMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV--------------------- 409
Query: 344 LDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R +
Sbjct: 410 -EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQ 467
Query: 404 VEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSI 463
R DL ++ L +R R+ G AVGAG+++
Sbjct: 468 ALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA---------- 515
Query: 464 RVPAILAY 471
RV +LAY
Sbjct: 516 RVLIVLAY 523
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 244/488 (50%), Gaps = 69/488 (14%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+ V
Sbjct: 88 LQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQR 283
+ F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQV 380
Query: 284 KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV 343
R +T S+ +E + Q L + + +L +
Sbjct: 381 LMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV--------------------- 409
Query: 344 LDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R +
Sbjct: 410 -EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQ 467
Query: 404 VEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSI 463
R DL ++ L +R R+ G AVGAG+++
Sbjct: 468 ALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA---------- 515
Query: 464 RVPAILAY 471
RV +LAY
Sbjct: 516 RVLIVLAY 523
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 244/488 (50%), Gaps = 69/488 (14%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+ V
Sbjct: 88 LQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQR 283
+ F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQV 380
Query: 284 KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV 343
R +T S+ +E + Q L + + +L +
Sbjct: 381 LMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV--------------------- 409
Query: 344 LDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R +
Sbjct: 410 -EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQ 467
Query: 404 VEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSI 463
R DL ++ L +R R+ G AVGAG+++
Sbjct: 468 ALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA---------- 515
Query: 464 RVPAILAY 471
RV +LAY
Sbjct: 516 RVLIVLAY 523
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 244/488 (50%), Gaps = 69/488 (14%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++IVE+ LGA +D +F+ F+ P+A+AS+ QVH A+LK G+ V
Sbjct: 88 LQDQVPPFDSAVAIAIVEKSLGARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL +R IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALMRDIATWAERL--WADGRRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP +FW+Y+TP +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMFWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT------TAVRRTAQ-FFLNSFEERLAAQR 283
+ F +++D +V ++ G + P DT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPP--DTRVEELESAIRAVCEPYFDRALKDISLGQV 380
Query: 284 KEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSV 343
R +T S+ +E + Q L + + +L +
Sbjct: 381 LMRLFST---------SRRFNVEIQPQ-LVLLQKTMLNV--------------------- 409
Query: 344 LDGIGKGLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADR 403
+G+G+ LDP D+ + AKPY +E + G+ + F+ + ++ L R +
Sbjct: 410 -EGLGRSLDPELDLWKTAKPY-LERWMTEQIGLRGWYERFKVEAPQWSKTLPQLPRLVHQ 467
Query: 404 VEKLAETIQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILYLNSI 463
R DL ++ L +R R+ G AVGAG+++
Sbjct: 468 ALISHHEAPRAISDDLIRQI--LVEQRRTNRLLQALLVFGLAVGAGAVIA---------- 515
Query: 464 RVPAILAY 471
RV +LAY
Sbjct: 516 RVLIVLAY 523
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 194 bits (494), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 203/379 (53%), Gaps = 52/379 (13%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A+ +VE+ LGAP+D +F+ F+ P+A+AS+ QVH A +K G+ V
Sbjct: 88 LQDQVPPFDSAVAIGLVEKSLGAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL LR IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALLRDIAVWAERL--WADGKRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP ++WE+ TP +L ME + G+ I+++++L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKE 285
+ F +++D +V ++ G + PT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIRAVCEPYFDRALKDISLGQVLM 382
Query: 286 REITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLD 345
R +T S+ +E + Q L + + +L + +
Sbjct: 383 RLFST---------SRRFNVEIQPQ-LVLLQKTMLNV----------------------E 410
Query: 346 GIGKGLDPRFDITEIAKPY 364
G+G+ LDP D+ + AKPY
Sbjct: 411 GLGRSLDPELDLWKTAKPY 429
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 202/379 (53%), Gaps = 52/379 (13%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A+ +VE LGAP+D +F+ F+ P+A+AS+ QVH A +K G+ V
Sbjct: 88 LQDQVPPFESAVAIRLVENALGAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL LR IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALLRDIAVWAERL--WADGKRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP ++WE+ TP +L ME + G+ I+++++L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVGVPISQVETLRAAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKE 285
+ F +++D +V ++ G + PT +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIRAVCEPYFDRALKDISLGQVLM 382
Query: 286 REITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLD 345
R +T S+ +E + Q L + + +L + +
Sbjct: 383 RLFST---------SRRFNVEIQPQ-LVLLQKTMLNV----------------------E 410
Query: 346 GIGKGLDPRFDITEIAKPY 364
G+G+ LDP D+ + AKPY
Sbjct: 411 GLGRSLDPELDLWKTAKPY 429
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 202/379 (53%), Gaps = 52/379 (13%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QDQVPPF S A++I+E+ LGAP+D +F+ F+ P+A+AS+ QVH A LK G++V
Sbjct: 88 LQDQVPPFDSAVAIAIIEKSLGAPVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQV 147
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RP + + D DL LR IA + +++ +DG + R+ VA +D+ L+ E+D
Sbjct: 148 AVKVLRPNMLPVIDSDLALLRDIAVWAERL--WADGKRLKPREVVAEFDKY---LHDELD 202
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAAN NF +D + VP ++WEY T +L ME + G+ I+++ +L GVD
Sbjct: 203 LMREAANGSQLRRNFAGLDLLLVPEMYWEYCTANVLVMERMVGVPISQVDTLRVAGVDIP 262
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNIAV--DDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI V D + GR I DFG++G++S + L
Sbjct: 263 KLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYL 322
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDT----TAVRRTAQ-FFLNSFEERLAAQRKE 285
+ F +++D +V ++ G + T +A+R + +F + ++ Q
Sbjct: 323 AQNFLAFFKRDYHRVATLHLESGWVPATTRVEELESAIRAVCEPYFDRALKDISLGQVLM 382
Query: 286 REITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLD 345
R +T S+ +E + Q L + + +L + +
Sbjct: 383 RLFST---------SRRFNVEIQPQ-LVLLQKTMLNV----------------------E 410
Query: 346 GIGKGLDPRFDITEIAKPY 364
G+G+ LDP D+ + AKPY
Sbjct: 411 GLGRSLDPELDLWKTAKPY 429
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 193/375 (51%), Gaps = 32/375 (8%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF S+ +V ++EE+LG + +VF RFDVEP+A+AS+ QVH A+LK GEEVVVKV
Sbjct: 95 LQDRVPPFDSQLSVKLIEEQLGKKISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKV 154
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L ++A +K+ +D V + + +Y E+D +EAAN
Sbjct: 155 IRPGLKPIIAQDLAWLFILARAAEKVS--ADARLLHPVDVVSDYEKTIYDELDLLREAAN 212
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP ++W++ P++L ME + GI++ + +L + D K L V
Sbjct: 213 ASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGV 272
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 358 TEIAKPYAMELLKFR 372
A+P+ ++ R
Sbjct: 426 WNTAQPFLERWMRER 440
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 209/427 (48%), Gaps = 51/427 (11%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + AV+++EE+LGA + +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDRVPPFDPKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKV 155
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L +IA+ ++ +D + V I + +Y E+D +EAAN
Sbjct: 156 VRPGLKPVIAQDLAWLFLIAKAAERA--SADARRLHPVEIVGDYEKTIYDELDLLREAAN 213
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+D + + VP ++W+ P++L ME + G+ + + +L + D K L V
Sbjct: 214 ASQLRRNFEDSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGV 273
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V V + I D G++GS++ ++ L +
Sbjct: 274 EVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAF 333
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP +N FE AA R T E F+K
Sbjct: 334 FKRDYRRVAQLHIDSG-WVPANTK----------VNEFE---AAIR-----TVCEPIFEK 374
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 358 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLA----ETIQR 413
AKPY ++ R + V F NL Q +++ LA + ++R
Sbjct: 427 WSTAKPYLERWMRDRYSPKAV---------------FGNLHSQVEQLPHLAGMTRDLLER 471
Query: 414 LEQGDLK 420
L Q L
Sbjct: 472 LSQPHLH 478
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 211/427 (49%), Gaps = 51/427 (11%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + AV+++EE+LGA + +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDRVPPFDPQHAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKV 155
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L +IA+ ++ +D + V I + +Y E+D +EAAN
Sbjct: 156 VRPGLKPVIAQDLAWLFLIAKAAERA--SADARRLHPVEIVGDYEKTIYDELDLLREAAN 213
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + + VP ++W+ P++L ME + G+ + + +L + D K L V
Sbjct: 214 ASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGV 273
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V V + I D G++GS++ ++ L
Sbjct: 274 EVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAF 333
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP AQ +N FE AA R T E F+K
Sbjct: 334 FKRDYRRVAQLHIDSG-WVP----------AQTKVNEFE---AAIR-----TVCEPIFEK 374
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 358 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET----IQR 413
AKP+ ++ R + VI NL+ QA+++ LA+ ++R
Sbjct: 427 WSTAKPFLERWMRERMSPKAVI---------------GNLYNQAEQLPHLADMTRDLLER 471
Query: 414 LEQGDLK 420
L Q L
Sbjct: 472 LSQPHLN 478
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 189 bits (481), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 188/367 (51%), Gaps = 32/367 (8%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + A+ ++EE+LGA + DVF RFD +P+A+AS+ QVH A LK GEEVVVKV
Sbjct: 95 LQDRVPPFDQQLAIKLIEEQLGARICDVFSRFDEKPLASASVAQVHAACLKTGEEVVVKV 154
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L ++A +++ +D V + + +Y E+D +EAAN
Sbjct: 155 VRPGLKPIIGQDLAWLFILARMAERV--SADARLLHPVQVVMDYEKTIYDELDLLREAAN 212
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ D + VP ++W++ P++L ME + G+++ + L + D K L V
Sbjct: 213 ASQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGV 272
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + QI FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDL 425
Query: 358 TEIAKPY 364
A+PY
Sbjct: 426 WSTAQPY 432
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 189 bits (479), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 190/375 (50%), Gaps = 32/375 (8%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + A+ ++EE+LGA + DVF RFD P+A+AS+ QVH A LK GEEVVVKV
Sbjct: 95 LQDRVPPFDQQVAIKLIEEQLGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKV 154
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L ++A +++ +D V + + +Y E+D +EAAN
Sbjct: 155 VRPGLKPIIGQDLAWLFILARMAERV--SADARLLHPVQVVMDYEKTIYDELDLLREAAN 212
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
+ NF+ D + VP ++W++ P++L ME + G+++ + L + D K L V
Sbjct: 213 SSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKMLAERGV 272
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + QI FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDL 425
Query: 358 TEIAKPYAMELLKFR 372
A+PY ++ R
Sbjct: 426 WSTAQPYLERWMRER 440
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 188 bits (478), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 210/431 (48%), Gaps = 59/431 (13%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + AV+++E +LGA + +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 95 LQDRVPPFDPKQAVALIESQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKV 154
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L +IA+ ++ +D + V I + +Y E+D +EAAN
Sbjct: 155 VRPGLKPVIAQDLAWLFLIAKGAERAS--ADARRLHPVEIVGDYEKTIYDELDLLREAAN 212
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + + VP ++W+ P++L ME + G+ + + +L + D K L V
Sbjct: 213 ASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGV 272
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ H FFHAD HPGNI V V + I D G++GS++ ++ L
Sbjct: 273 EVFFTQVFRHSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAF 332
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V + + G VP A +N FE AA R T E F+K
Sbjct: 333 FKRDYRRVAELHIDSG-WVP----------AHTKVNEFE---AAIR-----TVCEPIFEK 373
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 358 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRA----FYNLFRQADRVEKLA----E 409
AKP F RW R+ + F NL+ QA+++ LA +
Sbjct: 426 WSTAKP-------------------FLERWMRERYSPKAMFGNLYSQAEQLPHLAGMTRD 466
Query: 410 TIQRLEQGDLK 420
++RL Q L
Sbjct: 467 LLERLSQPHLH 477
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 191/375 (50%), Gaps = 32/375 (8%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + A++++EE+LGA + DVF RFD P+A+AS+ QVH A LK GEEVVVKV
Sbjct: 95 LQDRVPPFDQQVAINLIEEQLGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKV 154
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L ++A +++ +D V + + +Y E+D +EAAN
Sbjct: 155 VRPGLKPVIGQDLAWLFILARMAERV--SADARLLHPVQVVMDYEKTIYDELDLLREAAN 212
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
+ NF+ D + VP ++W++ P++L ME + G+++ + L + D K L V
Sbjct: 213 SSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGV 272
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + QI FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 358 TEIAKPYAMELLKFR 372
A+PY ++ R
Sbjct: 426 WSTAQPYLERWMRER 440
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 192/375 (51%), Gaps = 32/375 (8%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF S+ +V+++E +LG + DVF RFD+EP+A+AS+ QVH A+LK GEEVVVKV
Sbjct: 95 LQDRVPPFDSQKSVALIEAQLGKKISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKV 154
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L ++A +K+ +D V + + +Y E+D +EAAN
Sbjct: 155 IRPGLKPIIAQDLAWLFILARAAEKL--SADARLLHPVDVVSDYEKTIYDELDLLREAAN 212
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP ++W++ P++L ME + GI++ + +L + D K L V
Sbjct: 213 ASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGV 272
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V V + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 358 TEIAKPYAMELLKFR 372
A+P+ ++ R
Sbjct: 426 WNTAQPFLERWMRER 440
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 185 bits (469), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 146/472 (30%), Positives = 231/472 (48%), Gaps = 58/472 (12%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARL-KGEEVVVKV 59
+QD+VPPFPSE A I+E+ LGAP+ ++F F +P+A+AS+ QVH A L G++VVVKV
Sbjct: 91 LQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLPNGQKVVVKV 150
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPG++ + DL + ++A L+K S+G + V + + S ++ E+D +EAAN
Sbjct: 151 LRPGIEKVIRQDLGLMYLMAGLLEKY--WSEGKRLHPVEVVADYDSTIHDELDLQREAAN 208
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF++ + +P I W+YT +L ME + GI I + +L++ GV+ + L V
Sbjct: 209 ASQLRRNFENSPLIYIPFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGV 268
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI VD N + I DFG++G+++P+ + L
Sbjct: 269 EIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAF 328
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+ +D +V Q +Q G + P +N FE AA R T E F++
Sbjct: 329 FRRDYRQVAQLHIQSGWVPPETR-----------VNEFE---AAIR-----TVCEPIFER 369
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL--------DGIGK 349
PL + G LL + F+ F V+ VL +G+G+
Sbjct: 370 PLKD-----------ISFGHFLLRL-----FQTARRFNMEVQPQLVLLQKTLLNVEGLGR 413
Query: 350 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNR---WDRQTRAFYNLFRQADRVEK 406
L P D+ A+P+ + ++ R G ++K +N W Q+ L A +
Sbjct: 414 QLYPDLDLWSTAQPFLEDWMRKR-IGPSGLIKSLQNHLPSWLEQSPEMPQLVHDALLQIR 472
Query: 407 LAETIQRLEQGDLKL-RVRTLESERAFQR-----VAAVQKTVGSAVGAGSLV 452
+ + + L L + + L SER ++R V A VGS AG +
Sbjct: 473 SSGPTEAQNRATLALMKEQQLRSERRWRRGFIALVLAGAALVGSQPHAGQWL 524
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 195/382 (51%), Gaps = 32/382 (8%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF S+ ++ ++EE+LG + +VF RFDV+P+A+AS+ QVH A+LK GEEVVVKV
Sbjct: 95 LQDRVPPFDSQQSMKLIEEQLGKKISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKV 154
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L ++A ++ +D V + + +Y E+D +EAAN
Sbjct: 155 IRPGLKPIIGQDLAWLFILARAAERF--SADARLLHPVDVVADYEKTIYDELDLLREAAN 212
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP ++W++ P++L ME + G+++ + +L + D K L V
Sbjct: 213 ASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGV 272
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V VN + I D G++GS++P ++ L +
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAF 332
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP A+ LN FE AA R T E F+K
Sbjct: 333 FKRDYRRVAQLHIDSG-WVP----------AETKLNEFE---AAIR-----TVCEPIFEK 373
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 374 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 425
Query: 358 TEIAKPYAMELLKFREAGVEVI 379
A+P+ ++ R + V+
Sbjct: 426 WNTAQPFLERWMRERMSPKTVL 447
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 193/382 (50%), Gaps = 58/382 (15%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKG-----EEV 55
+QD+VPPF + A +IVE LG PL +F RFD P+A+AS+ QVH A L+G EV
Sbjct: 89 LQDRVPPFDPKIAAAIVERSLGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREV 148
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEID 112
VKV RPG+ + D DL +R +A +++K+ +DG + R+ VA +D+ L+ E+D
Sbjct: 149 AVKVLRPGMLPVIDSDLALMRDVATWMEKL--WADGKRLKPREVVAEFDK---YLHDELD 203
Query: 113 YTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRK 172
+EAANA NF + + VP +FW++ T ++ ME + G++++ L GVD
Sbjct: 204 LMREAANASQLRRNFAKSELLLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTH 263
Query: 173 RLGRYAVESYLEQILSHGFFHADPHPGNI--AVDDVNGGRLIFYDFGMMGSISPNIREGL 230
+L R VE + Q+ GFFHAD HPGNI +V + GR I DFG++G++S + L
Sbjct: 264 KLARDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYL 323
Query: 231 LEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITT 290
+ F +++D +V V+ G + T V EE A R
Sbjct: 324 AQNFLAFFQRDYHRVALLHVESGW---APEETRV-----------EELEGAIR-----AC 364
Query: 291 QELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL------ 344
E F +PL GE L + + F+ F V+ VL
Sbjct: 365 CEPYFDRPL----------------GEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLL 408
Query: 345 --DGIGKGLDPRFDITEIAKPY 364
+G+G+ LDP D+ + AKP+
Sbjct: 409 NVEGLGRQLDPDLDLWKTAKPF 430
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/427 (31%), Positives = 208/427 (48%), Gaps = 51/427 (11%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + AV+++EE+LGA + +VF RFDVEP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDRVPPFDPQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKV 155
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L +IA+ ++ +D + V I + +Y E+D +EAAN
Sbjct: 156 VRPGLKPVIAQDLAWLFLIAKAAERA--SADARRLHPVEIVGDYEKTIYDELDLLREAAN 213
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + + VP ++W+ P++L ME + G+ + + +L + D K L V
Sbjct: 214 ASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGV 273
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V V + I D G++GS++ ++ L
Sbjct: 274 EVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAF 333
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D +V Q + G VP A +N FE AA R T E F+K
Sbjct: 334 FKRDYRRVAQLHIDSG-WVP----------AHTKVNEFE---AAIR-----TVCEPIFEK 374
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDL 426
Query: 358 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLA----ETIQR 413
AKP+ ++ R + V F N+ Q +++ LA + ++R
Sbjct: 427 WSTAKPFLERWMRDRYSPKAV---------------FGNIHGQVEQLPHLANMARDLLER 471
Query: 414 LEQGDLK 420
L Q L
Sbjct: 472 LSQPHLN 478
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 195/373 (52%), Gaps = 44/373 (11%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPFPS+ + + V + LG P+++VF FD +P+A+AS+ QVH L G EV VKV
Sbjct: 89 LQDRVPPFPSDVSRAAVVQSLGRPIEEVFASFDADPVASASIAQVHFGVLHDGREVAVKV 148
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQE 116
RP + ++ + DL LRV A +L+++ P DG + R+ VA +D + L+ E+D +E
Sbjct: 149 LRPNVLNIIEADLALLRVAAAWLERLSP--DGRRLRPREVVAEFD---NYLHDELDLGRE 203
Query: 117 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR 176
AANA N +D + +P + W+ ++ ++L ME + G+ I++I++L G+D +L R
Sbjct: 204 AANAAQLRRNMGGLDLIMLPEMIWDLSSAEVLVMERMHGVPISQIETLRAAGIDIPKLAR 263
Query: 177 YAVESYLEQILSHGFFHADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEAF 234
V + Q+ GFFHAD HPGNI V GR I DFG++G++ +E L + F
Sbjct: 264 DGVTIFFTQVFRDGFFHADMHPGNIMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNF 323
Query: 235 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 294
+ +D +V + ++ G VP +E A R E
Sbjct: 324 LAFFRRDYRRVAELHIESG-WVPAS-------------TRVDELEGAVR-----AVCEPH 364
Query: 295 FKKPLSKEEKIEKKKQRLAAIGEDLLAI-AADQPFRFPATFTFVVRAFSVLD--GIGKGL 351
F +PL ++G+ LL + + F V+ ++L+ G+G+ L
Sbjct: 365 FDRPLKD-----------ISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVEGLGRQL 413
Query: 352 DPRFDITEIAKPY 364
DP D+ + AKP+
Sbjct: 414 DPELDLWQTAKPF 426
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 195/383 (50%), Gaps = 48/383 (12%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + +V+++EE+LGA +D+ F RFD EP+A+AS+ QVH A+LK GEEVVVKV
Sbjct: 96 LQDRVPPFNPQQSVALIEEQLGARVDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKV 155
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L + A ++ ++ + V + + +Y E+D +EAAN
Sbjct: 156 VRPGLKAVIRQDLAWLYLFARLAERA--STEARRLHLVDVVSDYEKTIYDELDLLREAAN 213
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP I+W++ P++L ME + G+ + + +L + G D K L V
Sbjct: 214 ASQLKRNFEGSPLLYVPQIYWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGV 273
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVNGG--RLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V + I D G++GS++P ++ L
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAF 333
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D KV Q + G VP DT +N FE AA R T E F+K
Sbjct: 334 FKRDYRKVAQLHIDSG-WVP-ADTQ---------VNEFE---AAIR-----TVCEPIFEK 374
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL--------DGIGK 349
PL + G+ LL + F+ F V+ VL +G+G+
Sbjct: 375 PLKD-----------ISFGQLLLRL-----FQTARRFNMEVQPQLVLLQKTLLNIEGLGR 418
Query: 350 GLDPRFDITEIAKPYAMELLKFR 372
L P D+ AKP+ ++ R
Sbjct: 419 QLYPELDLWTTAKPFLERWMRKR 441
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 182 bits (461), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 150/502 (29%), Positives = 232/502 (46%), Gaps = 61/502 (12%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+V PF +TA I+E LG ++ F FD P+A+AS+ QVH A L G EVVVKV
Sbjct: 91 LQDRVEPFEGQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDGREVVVKV 150
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RP ++ D+ L+ +A ++ P +D + I E + L E+D +E AN
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRP--CEIVAEIETTLAAELDLQREGAN 208
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A + ++ D + VP + W +T Q+LT+E + GI + I LD G+DRK L +
Sbjct: 209 ASVLRRFWEASDDIYVPEVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGI 268
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAFY 235
+ Q+ FFHAD H GNI VD + R I DFG+MG +S + L E F
Sbjct: 269 RVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFM 328
Query: 236 GIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGF 295
I+ KD ++ + V+ G + P VR EE AA R + E F
Sbjct: 329 AIFHKDYRRIAELHVEAGWIPPH-----VR---------IEELEAAAR-----SVCEPYF 369
Query: 296 KKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 355
+PLS+ LA + L +A + + ++G+G+ LDP
Sbjct: 370 TRPLSQIS--------LAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPEL 421
Query: 356 DITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET--IQR 413
DI +A+P +L+ R + LK+ R + A +L T +Q+
Sbjct: 422 DIWVVARPVLERILRARYSPRHA-LKELNKR-------LPEIMTHAPDTPRLIHTWLVQQ 473
Query: 414 LE---QGDLKL-RVRTLE-SERAFQRVAAVQKTVGSAVGAGSLVNLATI-------LYLN 461
+E Q D+ L ++R L + + QR + V + VG+G LV A + LYL
Sbjct: 474 VESRKQNDVYLQQIRALAMTLQGLQR-----RVVNAIVGSGLLVAAAVLYGLHPDGLYLG 528
Query: 462 SIRVPAILAYVSCAFFGFQVLF 483
+I V ++++ A F +
Sbjct: 529 AIPVWSLISGCVGALALFSAWW 550
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 186/371 (50%), Gaps = 36/371 (9%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK---GE--EV 55
+QD+VPPFPS A++ +E P+ DVF +FD PIA+AS+ QVH A ++ GE EV
Sbjct: 89 LQDRVPPFPSAVAIATIERAFRRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREV 148
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 115
VKV RP ++ + + DL + ++A +++K+ P DG + + E L+ E+D +
Sbjct: 149 AVKVLRPSMRGVIEKDLALMAMMAGWVEKLSP--DGKRLKPREVVGEFDKYLHDELDLVR 206
Query: 116 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 175
EAANA N ++ V +P +FW++ P+++ ME + G+ I ++ L GVD +L
Sbjct: 207 EAANAAQLRRNMASLELVLIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLA 266
Query: 176 RYAVESYLEQILSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEA 233
R V + Q+ GFFHAD HPGNI V GR I DFG++G+++ + +E L +
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQN 326
Query: 234 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 293
F + +D +V + ++ G VP G +E A R T E
Sbjct: 327 FVAFFRRDYKRVAELHLESG-WVPEG-------------TRIDELEGAIR-----TVCEP 367
Query: 294 GFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 353
F +PL K+ L + L + + + ++G+G+ LDP
Sbjct: 368 YFDRPL--------KEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 354 RFDITEIAKPY 364
D+ AKP+
Sbjct: 420 ELDLWHTAKPF 430
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 203/389 (52%), Gaps = 39/389 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE+V VKV
Sbjct: 90 LQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKV 149
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK---RDWVAIYDECASVLYQEIDYTQE 116
RP L + + DL +R A +++++ +DG + R+ VA +D+ L+ E+D +E
Sbjct: 150 LRPNLLPVIEQDLSLMRFGAGWVERL--FADGKRLKPREVVAEFDK---YLHDELDLMRE 204
Query: 117 AANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGR 176
AANA NF++ D + VP +F++Y T +LT+E++ G ++ I L G+D +L
Sbjct: 205 AANASQLGRNFQNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLAD 264
Query: 177 YAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYG 236
Y VE + Q+ GFFHAD HPGNI V N R I DFG++G+++ + L F
Sbjct: 265 YGVEIFFTQVFRDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLA 322
Query: 237 IYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFK 296
+ +D +V A ++ G VP DT A EE AA R E F
Sbjct: 323 FFNRDYRRVATAHIESG-WVP-ADTRA------------EELEAAVR-----AVCEPVFN 363
Query: 297 KPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFD 356
KP+S+ + L ++ + + ++G+G+ LDP D
Sbjct: 364 KPISQIS--------FGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLD 415
Query: 357 ITEIAKPYAMELLKFREAGVEVILKDFRN 385
+ + AKP+ ++ + + G + + ++ +N
Sbjct: 416 LWKTAKPFLVKWMN-GQVGPKALWRNLKN 443
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 234/503 (46%), Gaps = 63/503 (12%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKV 59
+QD+V PF +TA SI+E LG ++ F FD P+A+AS+ QVH A L VVVKV
Sbjct: 91 LQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKV 150
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAA 118
RP ++ D+ L+ +A ++ P +D + R+ VA E + L E+D +E A
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVA---EIETTLAAELDLQREGA 207
Query: 119 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 178
NA + ++ D + VP + W +T ++LT+E + GI + I LD G+DRK L
Sbjct: 208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKG 267
Query: 179 VESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAF 234
+ + Q+ FFHAD H GNI VD + R I DFG+MG +S + L E F
Sbjct: 268 IRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENF 327
Query: 235 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 294
I+ KD ++ + V+ G + P VR EE AA R + E
Sbjct: 328 MAIFHKDYRRIAELHVEAGWIPPH-----VR---------IEELEAAAR-----SVCEPY 368
Query: 295 FKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPR 354
F +PLS+ LA + L +A + + ++G+G+ LDP
Sbjct: 369 FTRPLSQIS--------LAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPE 420
Query: 355 FDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET--IQ 412
DI +A+P +L+ R + LK+ R + A +L T +Q
Sbjct: 421 LDIWVVARPVLERILRARYSPRHA-LKELNKR-------LPEIMTHAPDTPRLIHTWLVQ 472
Query: 413 RLE---QGDLKL-RVRTLE-SERAFQRVAAVQKTVGSAVGAGSLVNLATI-------LYL 460
++E Q D+ L ++R L + + QR + V + VG+G LV A + LYL
Sbjct: 473 QVESRKQNDVYLQQIRALAMTLQGLQR-----RVVNAIVGSGLLVAAAVLYGLHPDGLYL 527
Query: 461 NSIRVPAILAYVSCAFFGFQVLF 483
+I V ++++ A F +
Sbjct: 528 GTIPVWSLISGCIGALALFSAWW 550
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 234/503 (46%), Gaps = 63/503 (12%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGEE-VVVKV 59
+QD+V PF +TA SI+E LG ++ F FD P+A+AS+ QVH A L VVVKV
Sbjct: 91 LQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKV 150
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAA 118
RP ++ D+ L+ +A ++ P +D + R+ VA E + L E+D +E A
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVA---EIETTLAAELDLQREGA 207
Query: 119 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 178
NA + ++ D + VP + W +T ++LT+E + GI + I LD G+DRK L
Sbjct: 208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKG 267
Query: 179 VESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAF 234
+ + Q+ FFHAD H GNI VD + R I DFG+MG +S + L E F
Sbjct: 268 IRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENF 327
Query: 235 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 294
I+ KD ++ + V+ G + P VR EE AA R + E
Sbjct: 328 MAIFHKDYRRIAELHVEAGWIPPH-----VR---------IEELEAAAR-----SVCEPY 368
Query: 295 FKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPR 354
F +PLS+ LA + L +A + + ++G+G+ LDP
Sbjct: 369 FTRPLSQIS--------LAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPE 420
Query: 355 FDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET--IQ 412
DI +A+P +L+ R + LK+ R + A +L T +Q
Sbjct: 421 LDIWVVARPVLERILRARYSPRHA-LKELNKR-------LPEIMTHAPDTPRLIHTWLVQ 472
Query: 413 RLE---QGDLKL-RVRTLE-SERAFQRVAAVQKTVGSAVGAGSLVNLATI-------LYL 460
++E Q D+ L ++R L + + QR + V + VG+G LV A + LYL
Sbjct: 473 QVESRKQNDVYLQQIRALAMTLQGLQR-----RVVNAIVGSGLLVAAAVLYGLHPDGLYL 527
Query: 461 NSIRVPAILAYVSCAFFGFQVLF 483
+I V ++++ A F +
Sbjct: 528 GTIPVWSLISGCIGALALFSAWW 550
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 196/386 (50%), Gaps = 33/386 (8%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPF + + +E+ LG ++ ++ F+ EPIA+AS+ QVH+ARL GE V VKV
Sbjct: 90 LQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGERVAVKV 149
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RP L L + DL +R A +++++ SDG + + + E L+ E+D +EAAN
Sbjct: 150 LRPNLLPLIEQDLSLMRFGAAWVERL--FSDGRRLKPLEVVAEFDKYLHDELDLMREAAN 207
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF + + + VP +F++Y T +LT+E++ G + I L G+D +L Y V
Sbjct: 208 AGQLGRNFHNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGV 267
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLEAFYGIYE 239
E + Q+ GFFHAD HPGNI V N R I DFG++G+++ + L F +
Sbjct: 268 EIFFTQVFRDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFFN 325
Query: 240 KDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPL 299
+D +V A ++ G VP DT A EE AA R E F KP+
Sbjct: 326 RDYRRVATAHIESG-WVP-ADTRA------------EELEAAVR-----AVCEPVFNKPI 366
Query: 300 SKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITE 359
S+ + L ++ + + ++G+G+ LDP D+ +
Sbjct: 367 SQIS--------FGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWK 418
Query: 360 IAKPYAMELLKFREAGVEVILKDFRN 385
AKP+ ++ + + G + + ++ +N
Sbjct: 419 TAKPFLVKWMN-GQVGPKALWRNLKN 443
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 196/391 (50%), Gaps = 37/391 (9%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QD+VPPF + A++ +E P+ +VF FD +P+A+AS+ QVH A ++ EV
Sbjct: 89 LQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREV 148
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 115
VKV RPG+ + D DL +R++A +++ + +DG + + E + L+ E+D +
Sbjct: 149 AVKVLRPGMLPVIDKDLALMRMMAGWVESL--SADGKRLKPREVVAEFDNYLHDELDLVR 206
Query: 116 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 175
EAANA N + +D V +P +FW++ ++L ME + G+ IN+++ L GVD +L
Sbjct: 207 EAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLA 266
Query: 176 RYAVESYLEQILSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEA 233
R V + Q+ GFFHAD HPGNI V GR I DFG++G+++ +E L +
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQN 326
Query: 234 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 293
F + +D +V + ++ G VP A +N E AA R T E
Sbjct: 327 FTAFFRRDYKRVAELHIESG-WVP----------AHTRVNELE---AAIR-----TVCEP 367
Query: 294 GFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 353
F +PL K+ L + L + + + ++G+G+ LDP
Sbjct: 368 YFDRPL--------KEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 354 RFDITEIAKPYAMELLKFREAGVEVILKDFR 384
D+ AKP+ +E + G + + ++ R
Sbjct: 420 DLDLWSTAKPF-LEKWMLDQLGPQRLWRELR 449
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 195/391 (49%), Gaps = 37/391 (9%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-----GEEV 55
+QD+VPPF + A++ +E P+ +VF FD +P+A+AS+ QVH A ++ EV
Sbjct: 89 LQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREV 148
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 115
VKV RPG+ + D DL +R++A +++ + +DG + + E + L+ E+D +
Sbjct: 149 AVKVLRPGMLPVIDKDLALMRMMAGWVESL--SADGKRLKPREVVAEFDNYLHDELDLVR 206
Query: 116 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 175
EAANA N + +D V +P +FW++ ++L ME + G+ IN++ L GVD +L
Sbjct: 207 EAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLA 266
Query: 176 RYAVESYLEQILSHGFFHADPHPGNIAVDDV--NGGRLIFYDFGMMGSISPNIREGLLEA 233
R V + Q+ GFFHAD HPGNI V GR I DFG++G+++ +E L +
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQN 326
Query: 234 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 293
F + +D +V + ++ G VP A +N E AA R T E
Sbjct: 327 FTAFFRRDYKRVAELHIESG-WVP----------AHTRVNELE---AAIR-----TVCEP 367
Query: 294 GFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 353
F +PL K+ L + L + + + ++G+G+ LDP
Sbjct: 368 YFDRPL--------KEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 354 RFDITEIAKPYAMELLKFREAGVEVILKDFR 384
D+ AKP+ +E + G + + ++ R
Sbjct: 420 DLDLWSTAKPF-LEKWMLDQLGPQRLWRELR 449
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 207/420 (49%), Gaps = 63/420 (15%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QDQVPPFP + A++++E +LGAP+ +F RFD +P+A+AS+ QVH A+LK GEEVVVKV
Sbjct: 95 LQDQVPPFPEDQAIALIERQLGAPVSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKV 154
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RPGLK + DL L ++A ++ +D + V + + ++ E+D +EAAN
Sbjct: 155 VRPGLKPVIRQDLAWLFLLARIAERA--SADARRLRPVEVVSDYEKTIFDELDLLREAAN 212
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP ++W+ Q+L ME + G+ + + +L + D K L V
Sbjct: 213 ASQLRRNFEGSPLLYVPQVYWDLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGV 272
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V + I D G++GS++ ++ L
Sbjct: 273 EIFFTQVFRDSFFHADMHPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAF 332
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D KV Q + G VP DT +N FE AA R T E F+K
Sbjct: 333 FKRDYRKVAQLHIDSG-WVP-ADTK---------VNEFE---AAIR-----TVCEPIFEK 373
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVL--------DGIGK 349
PL + G+ LL + F+ F V+ VL +G+G+
Sbjct: 374 PLKD-----------ISFGQLLLRL-----FQTARRFNMEVQPQLVLLQKTLLNIEGLGR 417
Query: 350 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 409
L P D+ A+P+ ++ R + + ++ NL +QA++V L++
Sbjct: 418 QLYPDLDLWSTAQPFLERWMRERVSPLHLL---------------RNLQQQAEQVPHLSQ 462
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 234/503 (46%), Gaps = 63/503 (12%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGE-EVVVKV 59
+QD+V PF +TA I+E LG ++ F FD P+A+AS+ QVH A L EVVVKV
Sbjct: 91 LQDRVEPFEGQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRREVVVKV 150
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDYTQEAA 118
RP ++ D+ L+ +A ++ P +D + R+ VA E + L E+D +E A
Sbjct: 151 LRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVA---EIETTLAAELDLQREGA 207
Query: 119 NAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYA 178
NA + ++ D + VP + W +T ++LT+E + GI + I LD G+DRK L
Sbjct: 208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKG 267
Query: 179 VESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLEAF 234
+ + Q+ FFHAD H GNI VD + R I DFG+MG +S + L E F
Sbjct: 268 IRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENF 327
Query: 235 YGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELG 294
I+ KD ++ + V+ G +P VR EE AA R + E
Sbjct: 328 MAIFHKDYRRIAELHVEAG-WIPQH----VR---------IEELEAAAR-----SVCEPY 368
Query: 295 FKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPR 354
F +PLS+ LA + L +A + + ++G+G+ LDP
Sbjct: 369 FTRPLSQIS--------LAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPE 420
Query: 355 FDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAET--IQ 412
DI +A+P +L+ R + LK+ R + A +L T +Q
Sbjct: 421 LDIWVVARPVLERILRARYSPRHA-LKELNKR-------LPEIMTHAPDTPRLIHTWLVQ 472
Query: 413 RLE---QGDLKL-RVRTLE-SERAFQRVAAVQKTVGSAVGAGSLVNLATI-------LYL 460
++E Q D+ L ++R L + + QR + V + VG+G LV A + LYL
Sbjct: 473 QVESRKQNDVYLQQIRALAMTLQGLQR-----RVVNAIVGSGLLVAAAVLYGLHPDGLYL 527
Query: 461 NSIRVPAILAYVSCAFFGFQVLF 483
+I V ++++ A F +
Sbjct: 528 GTIPVWSLISGCVGALALFSAWW 550
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 205/420 (48%), Gaps = 45/420 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPFP E AV +EE+LGA ++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKV 155
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RP L+ + D+ L ++A +++ S+ + V + + + E+D +EAAN
Sbjct: 156 IRPNLEPVIRSDIAWLFILARLAERVS--SEARRLHPVEVVSDYEKTIVDELDLLREAAN 213
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP ++W++ P++L ME + GI + +++L + D K L V
Sbjct: 214 ASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGV 273
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V + I D G++GS++ ++ L
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAF 333
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D KV Q + G VP A+ +N FE AA R T E F+K
Sbjct: 334 FKRDYRKVAQLHIDSG-WVP----------AETKVNDFE---AAIR-----TVCEPIFEK 374
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
Query: 358 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 416
A+P+ ++ R + +++ R F Q + ++A +T++RL Q
Sbjct: 427 WATAQPFLERWMRERVSPKQLL------------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 205/420 (48%), Gaps = 45/420 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPFP E AV +EE+LGA ++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKV 155
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RP L+ + D+ L ++A +++ S+ + V + + + E+D +EAAN
Sbjct: 156 IRPNLEPVIRSDIAWLFILARLAERVS--SEARRLHPVEVVSDYEKTIVDELDLLREAAN 213
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP ++W++ P++L ME + GI + +++L + D K L V
Sbjct: 214 ASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGV 273
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V + I D G++GS++ ++ L
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAF 333
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D KV Q + G VP A+ +N FE AA R T E F+K
Sbjct: 334 FKRDYRKVAQLHIDSG-WVP----------AETKVNDFE---AAIR-----TVCEPIFEK 374
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
Query: 358 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 416
A+P+ ++ R + +++ R F Q + ++A +T++RL Q
Sbjct: 427 WATAQPFLERWMRERVSPKQLL------------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 205/420 (48%), Gaps = 45/420 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPFP E AV +EE+LGA ++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKV 155
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RP L+ + D+ L ++A +++ S+ + V + + + E+D +EAAN
Sbjct: 156 IRPNLEPVIRSDIAWLFILARLAERVS--SEARRLHPVEVVSDYEKTIVDELDLLREAAN 213
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP ++W++ P++L ME + GI + +++L + D K L V
Sbjct: 214 ASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGV 273
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDD--VNGGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V + I D G++GS++ ++ L
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAF 333
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D KV Q + G VP A+ +N FE AA R T E F+K
Sbjct: 334 FKRDYRKVAQLHIDSG-WVP----------AETKVNDFE---AAIR-----TVCEPIFEK 374
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
Query: 358 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 416
A+P+ ++ R + +++ R F Q + ++A +T++RL Q
Sbjct: 427 WATAQPFLERWMRERVSPKQLL------------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 205/420 (48%), Gaps = 45/420 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLK-GEEVVVKV 59
+QD+VPPFP E AV +EE+LGA ++ VF RF+ EP+A+AS+ QVH ARLK GEEVVVKV
Sbjct: 96 LQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKV 155
Query: 60 QRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQEAAN 119
RP L+ + D+ L ++A +++ S+ + V + + + E+D +EAAN
Sbjct: 156 IRPNLEPVIRSDIAWLFILARLAERVS--SEARRLHPVEVVSDYEKTIVDELDLLREAAN 213
Query: 120 AELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAV 179
A NF+ + VP ++W++ P++L ME + GI + +++L + D K L V
Sbjct: 214 ASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGV 273
Query: 180 ESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLEAFYGI 237
E + Q+ FFHAD HPGNI V + I D G++GS++ ++ L
Sbjct: 274 EIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAF 333
Query: 238 YEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKK 297
+++D KV Q + G VP A+ +N FE AA R T E F+K
Sbjct: 334 FKRDYRKVAQLHIDSG-WVP----------AETKVNDFE---AAIR-----TVCEPIFEK 374
Query: 298 PLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDI 357
PL K + L A + + ++G+G+ L P D+
Sbjct: 375 PL--------KDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDL 426
Query: 358 TEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLA-ETIQRLEQ 416
A+P+ ++ R + +++ R F Q + ++A +T++RL Q
Sbjct: 427 WATAQPFLERWMRERVSPKQLL------------RNFQQQVEQVPHLSQMARDTLERLSQ 474
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 186/371 (50%), Gaps = 36/371 (9%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGE-----EV 55
+QD+VPPF + AV+ +E P+ +VF F+ P+A+AS+ QVH A ++ EV
Sbjct: 89 LQDRVPPFDPDVAVATIERAFRRPVGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREV 148
Query: 56 VVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTQ 115
VKV RPG+ + D DL +R +A +++ + +DG + + E + L+ E+D +
Sbjct: 149 AVKVLRPGMLPVIDNDLGLMRAMAGWVESL--SADGKRLKPRQVVAEFDNYLHDELDLIR 206
Query: 116 EAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLG 175
EAANA N + + V++P I W++ P++L ME + G+ I++I+ L GVD ++L
Sbjct: 207 EAANAAQLRRNMERLGLVRIPEILWDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLA 266
Query: 176 RYAVESYLEQILSHGFFHADPHPGNIAVDDVNG--GRLIFYDFGMMGSISPNIREGLLEA 233
R V + Q+ GFFHAD HPGNI V G GR I DFG++GS++ +E L +
Sbjct: 267 RDGVTIFFTQVFRDGFFHADMHPGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQN 326
Query: 234 FYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQEL 293
F + +D +V + V+ G VP DT +N E + A E
Sbjct: 327 FTAFFRRDYKRVAELHVESG-WVP-ADTR---------INELESAIRA--------VCEP 367
Query: 294 GFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 353
F +PL K+ L + L + + + ++G+G+ LDP
Sbjct: 368 YFDRPL--------KEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 354 RFDITEIAKPY 364
D+ AKP+
Sbjct: 420 ELDLWSTAKPF 430
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 220/471 (46%), Gaps = 50/471 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGE------E 54
+QD+V PF E A IVE LG P+ F FD P+A+AS+ QVH A L + E
Sbjct: 91 LQDRVKPFDGEAARLIVERALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRRE 150
Query: 55 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDY 113
VVVKV RP ++ D D+ L +A +++ P++D + R+ VA E L E+D
Sbjct: 151 VVVKVLRPDIERQIDADIALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDL 207
Query: 114 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR 173
+E ANA + ++ D + VP + W +T + LT+E V GI + + LD G+DRK
Sbjct: 208 QREGANASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKA 267
Query: 174 LGRYAVESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREG 229
L V + Q+ FFHAD H GNI VD R I DFG+MG +S +
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYY 327
Query: 230 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREIT 289
L E F I+ KD ++ + V+ G + + VR +E AA R +
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM-----PSNVR---------IDELEAAAR-----S 368
Query: 290 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK 349
E F +PLS+ LA + L +A + + ++G+G+
Sbjct: 369 VCEPYFTRPLSEIS--------LAEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGR 420
Query: 350 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 409
LDP+ DI +A+P +L+ R + V L + R R + A + +L
Sbjct: 421 QLDPKLDIWAVARPVLERILRERYSPRRV-LGELRKR-------LPEIMTHAPDMPRLVH 472
Query: 410 T-IQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILY 459
+ +++ +G +L +R+ E + +Q V +A+ L+ +A +LY
Sbjct: 473 SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLY 523
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/471 (29%), Positives = 221/471 (46%), Gaps = 50/471 (10%)
Query: 1 MQDQVPPFPSETAVSIVEEELGAPLDDVFERFDVEPIAAASLGQVHRARLKGE------E 54
+QD+V PF E A IVE LG P+ F FD P+A+AS+ QVH A L + E
Sbjct: 91 LQDRVKPFDGEAARLIVERALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRRE 150
Query: 55 VVVKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAK-RDWVAIYDECASVLYQEIDY 113
VVVKV RP ++ D D+ L +A +++ P++D + R+ VA E L E+D
Sbjct: 151 VVVKVLRPDIERQIDADIALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDL 207
Query: 114 TQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKR 173
+E ANA + ++ D + VP + W +T + LT+E V GI + + LD G+DRK
Sbjct: 208 QREGANASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKA 267
Query: 174 LGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRL----IFYDFGMMGSISPNIREG 229
L V + Q+ FFHAD H GNI VD RL I DFG+MG +S +
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 230 LLEAFYGIYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREIT 289
L E F I+ KD ++ + V+ G + + VR +E AA R +
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM-----PSNVR---------IDELEAAAR-----S 368
Query: 290 TQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGK 349
E F +PLS+ LA + L +A + + ++G+G+
Sbjct: 369 VCEPYFTRPLSEIS--------LAEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGR 420
Query: 350 GLDPRFDITEIAKPYAMELLKFREAGVEVILKDFRNRWDRQTRAFYNLFRQADRVEKLAE 409
LDP+ DI +A+P +L+ R + V L + R R + A + +L
Sbjct: 421 QLDPKLDIWAVARPVLERILRERYSPRRV-LGELRKR-------LPEIMTHAPDMPRLVH 472
Query: 410 T-IQRLEQGDLKLRVRTLESERAFQRVAAVQKTVGSAVGAGSLVNLATILY 459
+ +++ +G +L +R+ E + +Q V +A+ L+ +A +LY
Sbjct: 473 SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLY 523
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,404,017
Number of Sequences: 539616
Number of extensions: 7777334
Number of successful extensions: 24230
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 23363
Number of HSP's gapped (non-prelim): 397
length of query: 502
length of database: 191,569,459
effective HSP length: 122
effective length of query: 380
effective length of database: 125,736,307
effective search space: 47779796660
effective search space used: 47779796660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)