BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010757
(502 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FIG9|ARC6_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6,
chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1
Length = 801
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 293/514 (57%), Positives = 364/514 (70%), Gaps = 31/514 (6%)
Query: 3 NILWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALA 62
NILW+VGGGGA+A+ GG TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALA
Sbjct: 296 NILWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALA 355
Query: 63 LVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLV 122
LVAQAF+GK+PHL+ DAD F+ LQQ KV + +Y E++F LERGLC+LL+
Sbjct: 356 LVAQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLI 415
Query: 123 GKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFR 182
GK+DECR+WLGLDS+ S YRNPAIV+FVLENS D++DLPGLCKLLETWLA VVFPRFR
Sbjct: 416 GKVDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFR 475
Query: 183 DTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQ 242
DT D +FKLGDYYDDP VL YLER+E SPLAAAAA+ RIGA +HVK+S +Q
Sbjct: 476 DTKDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAAAMARIGA-------EHVKASAMQ 528
Query: 243 ALQKVFPLGQGDK-------------AVKYVEHGETYDPVPVVETEESLTSDQNNFAFTT 289
ALQKVFP D+ +V V + D P V E++ +N F T
Sbjct: 529 ALQKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FET 585
Query: 290 DAYGT------SSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSV 343
+ Y SS D+ E S+ D +K+ SVKI+ AGVAIGL++L KY ++ SS
Sbjct: 586 NDYAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSF 644
Query: 344 QQKEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKL 403
Q+K++ + SD+ G + + + LPRMDAR AE+IV KWQ IKS AFGPDH + L
Sbjct: 645 QRKDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEML 703
Query: 404 PEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLT 463
PEVLDG+MLK+WTDRA+E AQLG YDY+LL L++DSVT+S +G A VEAT++ESA L+
Sbjct: 704 PEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSADGTRALVEATLEESACLS 763
Query: 464 DTVHPENCDEKISTYTTRYELSSTKSGWRITDGS 497
D VHPEN + TYTTRYE+ +KSGW+IT+GS
Sbjct: 764 DLVHPENNATDVRTYTTRYEVFWSKSGWKITEGS 797
>sp|Q8VY16|CDP1_ARATH Plastid division protein CDP1, chloroplastic OS=Arabidopsis
thaliana GN=CDP1 PE=1 SV=2
Length = 819
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 374 MDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSL 433
MD AE++VR+W+N+K++A GP H + L EVLD ML W A + + L
Sbjct: 688 MDTEEAEELVRQWENVKAEALGPTHQVYSLSEVLDESMLVQWQTLAQTAEAKSCYWRFVL 747
Query: 434 LNLTIDSVTLSQE---GRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSG 490
L+L + + ++ G A +EA ++E+A L D P+N + STY RY L + G
Sbjct: 748 LHLEVLQAHIFEDGIAGEAAEIEALLEEAAELVDESQPKNA-KYYSTYKIRYILKKQEDG 806
Query: 491 -WRIT 494
W+
Sbjct: 807 LWKFC 811
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1
Length = 1678
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLC----------------- 118
I +N ++L++N+ R +G + H A ERGLC
Sbjct: 885 IDSNNNPERYLKENQYYDSRVVGRYCEKRDPHLACVAYERGLCDRELIAVCNENSLFKSE 944
Query: 119 -SLLVGKLDECRLWLGLDSDKSPYRNPAI---VDFVLENSKEADD----------NDLPG 164
LVG+ D LW + S+ +PY+ I V L +++ DD DLP
Sbjct: 945 ARYLVGRRD-AELWAEVLSESNPYKRQLIDQVVQTALSETQDPDDISVTVKAFMTADLPN 1003
Query: 165 -LCKLLE-TWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIV 222
L +LLE L VF R+ ++ D V+ Y+ RLE N +P A AI
Sbjct: 1004 ELIELLEKIILDSSVFSDHRNLQNLLILTAIKADRTRVMDYINRLE-NYDAPDIANIAIS 1062
Query: 223 RIGATEATAVLDH--VKSSTIQAL 244
EA A+ V +S IQ L
Sbjct: 1063 NQLYEEAFAIFKKFDVNTSAIQVL 1086
>sp|C1DE52|DER_AZOVD GTPase Der OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
GN=der PE=3 SV=1
Length = 491
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 25/246 (10%)
Query: 46 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 105
P +P + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 184 PKRVPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 239
Query: 106 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 165
+ E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 240 RDEDKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 299
Query: 166 CKLLETWLAEVVF--------PRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPL-- 215
+LET A V+ P RD I + + D + ++ L G G L
Sbjct: 300 GFVLETGRALVIALNKWDGMEPGQRDYVKIELERRLMFADFADIHFISALHGTGVGHLYK 359
Query: 216 ----AAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDK-AVKYVEHGETYDPVP 270
A +A+ R + T +L+ +Q Q PL G + ++Y G P+
Sbjct: 360 SVQAAFQSAVTRWPTSRLTRILE----DAVQEHQP--PLVNGRRIKLRYAHLGGANPPLI 413
Query: 271 VVETEE 276
V+ +
Sbjct: 414 VIHGNQ 419
>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1
Length = 1675
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 84/221 (38%), Gaps = 39/221 (17%)
Query: 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSL--------------- 120
I +N + L++N R +G + H A ERG C L
Sbjct: 884 IDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSL 943
Query: 121 ---LVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD-------------NDLPG 164
LV + D LW + + +PYR P I V E D DLP
Sbjct: 944 SRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002
Query: 165 -LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIV 222
L +LLE L VF R+ ++ D V+ Y+ RL+ N +P A AI
Sbjct: 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAIS 1061
Query: 223 RIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 261
EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1062 NELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3
Length = 1675
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 84/221 (38%), Gaps = 39/221 (17%)
Query: 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSL--------------- 120
I +N + L++N R +G + H A ERG C L
Sbjct: 884 IDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSL 943
Query: 121 ---LVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD-------------NDLPG 164
LV + D LW + + +PYR P I V E D DLP
Sbjct: 944 SRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002
Query: 165 -LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIV 222
L +LLE L VF R+ ++ D V+ Y+ RL+ N +P A AI
Sbjct: 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAIS 1061
Query: 223 RIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 261
EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1062 NELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Length = 1675
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 84/221 (38%), Gaps = 39/221 (17%)
Query: 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSL--------------- 120
I +N + L++N R +G + H A ERG C L
Sbjct: 884 IDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSL 943
Query: 121 ---LVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD-------------NDLPG 164
LV + D LW + + +PYR P I V E D DLP
Sbjct: 944 SRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002
Query: 165 -LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIV 222
L +LLE L VF R+ ++ D V+ Y+ RL+ N +P A AI
Sbjct: 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAIS 1061
Query: 223 RIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 261
EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1062 NELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3
Length = 1675
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 84/221 (38%), Gaps = 39/221 (17%)
Query: 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSL--------------- 120
I +N + L++N R +G + H A ERG C L
Sbjct: 884 IDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSL 943
Query: 121 ---LVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD-------------NDLPG 164
LV + D LW + + +PYR P I V E D DLP
Sbjct: 944 SRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002
Query: 165 -LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIV 222
L +LLE L VF R+ ++ D V+ Y+ RL+ N +P A AI
Sbjct: 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAIS 1061
Query: 223 RIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 261
EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1062 NELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>sp|Q9HXJ8|DER_PSEAE GTPase Der OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=der PE=3 SV=1
Length = 493
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 46 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 105
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 186 PTRIPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 241
Query: 106 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 165
++E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 242 RNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 301
Query: 166 CKLLETWLAEVV 177
+LET A V+
Sbjct: 302 GFVLETGRALVI 313
>sp|A6V0W4|DER_PSEA7 GTPase Der OS=Pseudomonas aeruginosa (strain PA7) GN=der PE=3 SV=1
Length = 493
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 46 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 105
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 186 PTRIPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 241
Query: 106 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 165
++E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 242 RNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 301
Query: 166 CKLLETWLAEVV 177
+LET A V+
Sbjct: 302 GFVLETGRALVI 313
>sp|B7UWJ2|DER_PSEA8 GTPase Der OS=Pseudomonas aeruginosa (strain LESB58) GN=der PE=3
SV=1
Length = 493
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 46 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 105
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 186 PTRIPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 241
Query: 106 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 165
++E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 242 RNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 301
Query: 166 CKLLETWLAEVV 177
+LET A V+
Sbjct: 302 GFVLETGRALVI 313
>sp|A4VNW7|DER_PSEU5 GTPase Der OS=Pseudomonas stutzeri (strain A1501) GN=der PE=3 SV=1
Length = 499
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 46 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 105
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 192 PKRIPGPS-EKEGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 247
Query: 106 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 165
+ E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 248 RDEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 307
Query: 166 CKLLETWLAEVV 177
+LET A V+
Sbjct: 308 GFVLETGRALVI 319
>sp|Q02RV3|DER_PSEAB GTPase Der OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=der
PE=3 SV=1
Length = 493
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 46 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 105
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 186 PTRIPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 241
Query: 106 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 165
++E + L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 242 RNEEMYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 301
Query: 166 CKLLETWLAEVV 177
+LET A V+
Sbjct: 302 GFVLETGRALVI 313
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ada2 PE=1 SV=1
Length = 437
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 58 GVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDL 97
+ AL++ + K+P DA N+FKHL NKV + D
Sbjct: 387 ALKFALISASLTSKKPFQKTDAVNLFKHLDANKVEQVYDF 426
>sp|Q0SG15|NHAA1_RHOSR Na(+)/H(+) antiporter NhaA 1 OS=Rhodococcus sp. (strain RHA1)
GN=nhaA1 PE=3 SV=1
Length = 622
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 420 SEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESA------RLTDTVHP 468
S +A +G+T +++L IDS L+ E R + A V + RL+DTVHP
Sbjct: 378 SALAGIGFTISLFIVDLAIDSPELANEARVGVLTAAVIATVLGWALFRLSDTVHP 432
>sp|Q3K7C0|DER_PSEPF GTPase Der OS=Pseudomonas fluorescens (strain Pf0-1) GN=der PE=3
SV=1
Length = 490
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 22/202 (10%)
Query: 49 IPAETFEAYGVALALVAQAFVGKQP--HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEK 106
IP + E G+ +A++ + VGK + + D + + Q T RD SIYIP E+
Sbjct: 187 IPGPS-EKDGIKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPG---TTRD--SIYIPFER 240
Query: 107 HEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLC 166
++ ++ L GK+ E + ++ +V FV++ + D+DL L
Sbjct: 241 NDEKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLG 300
Query: 167 KLLETWLAEVV--------FPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAA 218
LE A V+ P RD + + ++ D + ++ L G G L A+
Sbjct: 301 FALEAGRALVIAINKWDGMTPSERDFVKVELQRRLFFVDFADIHFISALHGTGVGNLYAS 360
Query: 219 ------AAIVRIGATEATAVLD 234
+A+ R + T +L+
Sbjct: 361 VQNSFKSAVTRWPTSRLTQILE 382
>sp|Q06496|NPT2A_RAT Sodium-dependent phosphate transport protein 2A OS=Rattus
norvegicus GN=Slc34a1 PE=1 SV=1
Length = 637
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 200 VLRYLERLEGNGSSPLAAAAAIVRIGATEATA----VLDHVKSSTIQALQKVFPLGQGDK 255
++ Y ERL G SPL + GA A VL + +T A+ + P+ +
Sbjct: 1 MMSYSERLGGPAVSPLPVRGRHMVHGAAFAYVPSPQVLHRIPGTTTYAISSLSPVALTEH 60
Query: 256 AVKYVEHGETYDPVPVVETEE 276
+ Y E E +DP+P +E
Sbjct: 61 SCPYGEVLECHDPLPAKLAQE 81
>sp|Q886Y6|DER_PSESM GTPase Der OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=der PE=3 SV=1
Length = 489
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 12/175 (6%)
Query: 49 IPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHE 108
IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E++E
Sbjct: 186 IPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEDRVIVYDEPGTTRD--SIYIPFERNE 241
Query: 109 MEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKL 168
++ L GK+ E + ++ +V FV++ + D+DL L
Sbjct: 242 EKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFA 301
Query: 169 LETWLAEVV--------FPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPL 215
LE A V+ P RD I + ++ D + ++ L G G L
Sbjct: 302 LEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNL 356
>sp|Q9PLM5|SECA_CHLMU Protein translocase subunit SecA OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=secA PE=3 SV=1
Length = 968
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 69 VGKQPHLIADAD--NMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFAL 113
V + P L A D ++F H +QNK L L S+YI +++H +F L
Sbjct: 320 VREHPDLRAMVDKWDVFYHAEQNKEECLERLSSLYIVVDEHNNDFEL 366
>sp|B0BAF6|SECA_CHLTB Protein translocase subunit SecA OS=Chlamydia trachomatis serovar
L2b (strain UCH-1/proctitis) GN=secA PE=3 SV=1
Length = 969
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 69 VGKQPHLIADAD--NMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFAL 113
V + P L A D ++F H +QNK L L S+YI +++H +F L
Sbjct: 320 VREHPDLRAMIDKWDVFYHAEQNKEECLEKLSSLYIVVDEHNNDFEL 366
>sp|B0B8S7|SECA_CHLT2 Protein translocase subunit SecA OS=Chlamydia trachomatis serovar
L2 (strain 434/Bu / ATCC VR-902B) GN=secA PE=3 SV=1
Length = 969
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 69 VGKQPHLIADAD--NMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFAL 113
V + P L A D ++F H +QNK L L S+YI +++H +F L
Sbjct: 320 VREHPDLRAMIDKWDVFYHAEQNKEECLEKLSSLYIVVDEHNNDFEL 366
>sp|O84707|SECA_CHLTR Protein translocase subunit SecA OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=secA PE=3 SV=1
Length = 969
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 69 VGKQPHLIADAD--NMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFAL 113
V + P L A D ++F H +QNK L L S+YI +++H +F L
Sbjct: 320 VREHPDLRAMIDKWDVFYHAEQNKEQCLEKLSSLYIVVDEHNNDFEL 366
>sp|Q3KKZ3|SECA_CHLTA Protein translocase subunit SecA OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=secA PE=3 SV=1
Length = 969
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 69 VGKQPHLIADAD--NMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFAL 113
V + P L A D ++F H +QNK L L S+YI +++H +F L
Sbjct: 320 VREHPDLRAMIDKWDVFYHAEQNKEQCLEKLSSLYIVVDEHNNDFEL 366
>sp|A9N205|DER_SALPB GTPase Der OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
GN=der PE=3 SV=1
Length = 490
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 32/226 (14%)
Query: 93 TLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLE 152
T RD SIYIP+E+ E E+ L GK+ + + + +V V++
Sbjct: 236 TTRD--SIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVID 293
Query: 153 NSKEADDNDLPGLCKLLET----------W--LAEVVFPRFRDTSDIRFKLGDYYDDPTV 200
+ D DL L +L + W L++ V + ++T D R D+
Sbjct: 294 AREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDF----AR 349
Query: 201 LRYLERLEGNGSSPLAAAAAIVRIGATE--ATAVLDHVKSSTIQALQKVFPLGQGDKAVK 258
+ ++ L G+G L + +T +TA+L + + ++ Q PL +G +
Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQP--PLVRGRRVKL 407
Query: 259 YVEHGETYDPVPVVETEESLTSD---------QNNFAFTTDAYGTS 295
H Y+P P+V + D N F + + GTS
Sbjct: 408 KYAHAGGYNP-PIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTS 452
>sp|A8AD75|DER_CITK8 GTPase Der OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
/ SGSC4696) GN=der PE=3 SV=1
Length = 490
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 93 TLRDLGSIYIPLEKHEMEFAL-------ERGLCSLLVGKLDECRLWLGLDSDKSPYRNPA 145
T RD SIYIP+E+ E E+ L +RG + V K + ++ +
Sbjct: 236 TTRD--SIYIPMERDEREYVLIDTAGVRKRGKVTDAVEKFSVIKTLQAIE-------DAN 286
Query: 146 IVDFVLENSKEADDNDLPGLCKLLET----------W--LAEVVFPRFRDTSDIRFKLGD 193
+V V++ + D DL L +L + W L + V + ++T D R D
Sbjct: 287 VVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLTQEVKEQVKETLDFRLGFID 346
Query: 194 YYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATE--ATAVLDHVKSSTIQALQKVFPLG 251
+ + ++ L G+G L + +T +TA+L + + ++ Q PL
Sbjct: 347 F----ARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMAMAVEDHQP--PLV 400
Query: 252 QGDKAVKYVEHGETYDPVPVVETEESLTSD---------QNNFAFTTDAYGT 294
+G + H Y+P P+V + D N F + D GT
Sbjct: 401 RGRRVKLKYAHAGGYNP-PIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGT 451
>sp|Q48LZ0|DER_PSE14 GTPase Der OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=der PE=3 SV=1
Length = 490
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 12/175 (6%)
Query: 49 IPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHE 108
IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E++E
Sbjct: 187 IPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEDRVIVYDEPGTTRD--SIYIPFERNE 242
Query: 109 MEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKL 168
++ L GK+ E + ++ +V FV++ + D+DL L
Sbjct: 243 EKYTLIDTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFA 302
Query: 169 LETWLAEVV--------FPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPL 215
LE A V+ P RD I + ++ D + ++ + G G L
Sbjct: 303 LEAGRALVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNL 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,841,926
Number of Sequences: 539616
Number of extensions: 7905376
Number of successful extensions: 20670
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 20658
Number of HSP's gapped (non-prelim): 42
length of query: 502
length of database: 191,569,459
effective HSP length: 122
effective length of query: 380
effective length of database: 125,736,307
effective search space: 47779796660
effective search space used: 47779796660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)