Query 010757
Match_columns 502
No_of_seqs 103 out of 110
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13355 DUF4101: Protein of u 100.0 1.3E-37 2.9E-42 276.6 15.1 116 379-495 1-117 (117)
2 PF04280 Tim44: Tim44-like dom 95.1 0.28 6.1E-06 44.5 10.9 97 398-496 38-145 (147)
3 PRK13616 lipoprotein LpqB; Pro 94.5 0.22 4.7E-06 56.2 10.4 104 372-495 52-155 (591)
4 PRK13615 lipoprotein LpqB; Pro 93.7 0.49 1.1E-05 53.1 11.0 100 378-495 52-151 (557)
5 PF12870 Lumazine_bd: Lumazine 93.6 0.13 2.9E-06 43.3 5.1 34 447-494 78-111 (111)
6 PRK13613 lipoprotein LpqB; Pro 93.4 0.7 1.5E-05 52.3 11.7 104 378-495 61-167 (599)
7 PRK13614 lipoprotein LpqB; Pro 92.4 1.2 2.6E-05 50.1 11.8 100 378-495 61-161 (573)
8 PF14534 DUF4440: Domain of un 89.1 1.3 2.9E-05 36.3 6.4 52 435-493 56-107 (107)
9 PF13474 SnoaL_3: SnoaL-like d 88.8 1.8 3.8E-05 36.7 7.2 58 427-496 57-114 (121)
10 PF13577 SnoaL_4: SnoaL-like d 88.2 3.3 7.1E-05 35.5 8.5 57 434-496 70-126 (127)
11 PF12883 DUF3828: Protein of u 87.1 0.7 1.5E-05 41.4 3.7 79 402-496 29-116 (120)
12 PF05494 Tol_Tol_Ttg2: Toluene 86.2 1.4 3E-05 41.4 5.4 51 434-498 85-137 (170)
13 TIGR03481 HpnM hopanoid biosyn 84.7 2.2 4.8E-05 41.6 6.1 53 431-498 108-160 (198)
14 COG5517 Small subunit of pheny 80.5 3.7 8E-05 39.0 5.6 56 437-499 93-149 (164)
15 TIGR02246 conserved hypothetic 80.4 12 0.00026 32.0 8.6 21 476-496 101-121 (128)
16 PF14559 TPR_19: Tetratricopep 76.0 5.3 0.00012 30.6 4.5 45 76-135 7-51 (68)
17 COG4319 Ketosteroid isomerase 75.7 10 0.00022 35.3 6.9 55 435-495 71-126 (137)
18 PF12893 Lumazine_bd_2: Putati 74.0 15 0.00034 31.8 7.5 42 437-495 71-112 (116)
19 TIGR00984 3a0801s03tim44 mitoc 73.8 41 0.00089 36.3 11.8 105 380-495 256-378 (378)
20 PF13432 TPR_16: Tetratricopep 69.2 12 0.00025 28.7 5.0 43 76-133 13-55 (65)
21 PF00866 Ring_hydroxyl_B: Ring 69.2 36 0.00079 31.3 9.1 75 415-498 54-135 (145)
22 TIGR03232 benzo_1_2_benB benzo 65.0 24 0.00052 33.1 7.1 56 437-499 84-140 (155)
23 PRK15117 ABC transporter perip 61.0 26 0.00055 34.6 6.8 52 434-498 115-168 (211)
24 TIGR03231 anthran_1_2_B anthra 60.0 27 0.00059 32.7 6.5 22 478-499 119-140 (155)
25 PF05223 MecA_N: NTF2-like N-t 57.2 30 0.00066 30.4 6.0 100 376-494 4-104 (118)
26 cd00667 ring_hydroxylating_dio 55.0 66 0.0014 29.4 8.1 57 437-499 89-146 (160)
27 TIGR02267 Myxococcus xanthus p 49.2 5.3 0.00011 36.2 -0.2 27 160-186 90-116 (123)
28 PRK10069 3-phenylpropionate di 45.0 1.2E+02 0.0026 28.9 8.4 57 437-499 110-168 (183)
29 PF13174 TPR_6: Tetratricopept 44.8 20 0.00043 23.3 2.2 24 110-133 1-24 (33)
30 KOG3081 Vesicle coat complex C 44.1 56 0.0012 34.0 6.2 45 76-135 189-233 (299)
31 PF13371 TPR_9: Tetratricopept 43.4 52 0.0011 25.4 4.7 27 108-134 28-54 (73)
32 COG2854 Ttg2D ABC-type transpo 42.9 41 0.00088 33.3 4.8 106 373-498 52-169 (202)
33 PF09543 DUF2379: Protein of u 40.8 9.1 0.0002 34.8 0.0 27 160-186 88-114 (121)
34 TIGR02552 LcrH_SycD type III s 40.4 1.3E+02 0.0028 25.9 7.2 58 54-133 52-109 (135)
35 PLN03088 SGT1, suppressor of 38.9 1.1E+02 0.0023 32.4 7.6 59 54-134 37-95 (356)
36 PRK15359 type III secretion sy 38.2 50 0.0011 29.9 4.5 54 67-135 31-84 (144)
37 PF07721 TPR_4: Tetratricopept 37.9 43 0.00094 21.6 2.9 22 112-133 4-25 (26)
38 PRK15359 type III secretion sy 36.1 66 0.0014 29.1 4.9 45 74-133 72-116 (144)
39 TIGR02552 LcrH_SycD type III s 34.2 1.1E+02 0.0024 26.2 5.9 60 54-135 18-77 (135)
40 cd00531 NTF2_like Nuclear tran 34.1 2.1E+02 0.0046 23.0 7.3 23 476-498 99-121 (124)
41 KOG1586 Protein required for f 32.9 16 0.00035 37.3 0.4 79 120-206 165-255 (288)
42 cd00189 TPR Tetratricopeptide 31.9 2E+02 0.0044 20.9 7.1 46 74-134 48-93 (100)
43 PF12895 Apc3: Anaphase-promot 31.7 55 0.0012 26.4 3.3 56 55-133 27-82 (84)
44 PF13374 TPR_10: Tetratricopep 30.9 48 0.001 22.5 2.4 24 375-398 17-40 (42)
45 PF13414 TPR_11: TPR repeat; P 30.5 87 0.0019 23.8 4.1 46 73-133 16-62 (69)
46 PF05309 TraE: TraE protein; 29.2 5.1E+02 0.011 24.7 11.3 75 409-496 106-180 (187)
47 PF00515 TPR_1: Tetratricopept 28.7 74 0.0016 21.0 3.0 24 110-133 2-25 (34)
48 TIGR02761 TraE_TIGR type IV co 28.5 5.3E+02 0.011 24.7 11.0 73 409-494 106-178 (181)
49 PF07719 TPR_2: Tetratricopept 28.3 72 0.0016 20.8 2.9 23 111-133 3-25 (34)
50 smart00028 TPR Tetratricopepti 27.7 71 0.0015 18.7 2.6 25 110-134 2-26 (34)
51 PF09477 Type_III_YscG: Bacter 27.7 1.8E+02 0.0038 26.5 5.9 90 56-154 7-111 (116)
52 PF12707 DUF3804: Protein of u 26.8 3.2E+02 0.007 25.1 7.4 53 436-496 63-115 (128)
53 PF08332 CaMKII_AD: Calcium/ca 25.8 2.7E+02 0.006 25.4 7.0 17 479-495 105-121 (128)
54 PF15655 Imm-NTF2: NTF2 fold i 25.6 51 0.0011 30.0 2.3 17 479-495 101-117 (130)
55 PF12642 TpcC: Conjugative tra 25.3 1.1E+02 0.0025 29.7 4.8 55 425-495 174-232 (232)
56 PRK10370 formate-dependent nit 23.4 1.8E+02 0.0039 28.0 5.7 45 76-135 126-170 (198)
57 PF06287 DUF1039: Protein of u 23.2 2.3E+02 0.0049 23.4 5.3 47 74-135 7-53 (66)
58 PF04733 Coatomer_E: Coatomer 23.2 1.1E+02 0.0025 31.4 4.5 47 74-135 181-227 (290)
59 PF13525 YfiO: Outer membrane 22.2 1.7E+02 0.0037 28.0 5.3 70 53-155 5-74 (203)
60 PF11846 DUF3366: Domain of un 20.8 3.1E+02 0.0066 25.9 6.7 58 62-135 113-170 (193)
61 PRK10694 acyl-CoA esterase; Pr 20.0 2.1E+02 0.0045 26.0 5.1 62 398-461 21-85 (133)
No 1
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=100.00 E-value=1.3e-37 Score=276.57 Aligned_cols=116 Identities=44% Similarity=0.717 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC-CCceEEEEEEEE
Q 010757 379 AEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ-EGRHAWVEATVK 457 (502)
Q Consensus 379 A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~-~~~rA~VeA~V~ 457 (502)
|++||++||++||+||||+|+++.|++||+|+||++|++++++++++||||+|+ |+++|++|+++. +|+||+|+|+|+
T Consensus 1 A~~lv~~Wl~~Ka~alg~~~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~y~~y~-~~~~I~sv~~~~~~~~ra~v~a~v~ 79 (117)
T PF13355_consen 1 AEQLVQRWLSAKAQALGPPHDIDSLSEVLTGPLLSQWQDRAQWLKANGWYWEYD-HKLKIDSVEVFSDSPNRATVEATVT 79 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCcchhHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEe-eeeEEEEEEEcCCCCCeEEEEEEEE
Confidence 689999999999999999999999999999999999999999999999999999 999999999877 699999999999
Q ss_pred EeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeec
Q 010757 458 ESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 495 (502)
Q Consensus 458 E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~ 495 (502)
|+++||++|++.+++||.++|+|||+|+|++|+|||+|
T Consensus 80 E~~~l~~~g~~~~~~s~~~~~~vrY~L~r~~~~WkI~d 117 (117)
T PF13355_consen 80 ESAQLYDNGQPDNNPSYDSTLRVRYELVRQNGQWKITD 117 (117)
T ss_pred EEEEEEeCCccccCCCCCCcEEEEEEEEEcCCEEEecC
Confidence 99999999999988899999999999999999999986
No 2
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=95.05 E-value=0.28 Score=44.47 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC---CCceEEEEEEE--EEeeeEeccCCCccCC
Q 010757 398 HSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ---EGRHAWVEATV--KESARLTDTVHPENCD 472 (502)
Q Consensus 398 h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~---~~~rA~VeA~V--~E~a~l~~~~~~~~~~ 472 (502)
-|.+.|..++++.|++++....++.+..|....- ..+.|..+++.. +++.+.|.+++ +.....++..+.-...
T Consensus 38 ~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~~~~--~~v~i~~~~i~~~~~~~~~~~vtv~f~~~~~~~~~d~~G~ii~G 115 (147)
T PF04280_consen 38 GDLEALRPLLTEELYERLQAEIKARRSRGEVNDP--EIVRIDNAEIVEAEQEGNFDQVTVRFRSQQIDYVDDKDGEIIEG 115 (147)
T ss_dssp T-HHHHHHHB-HHHHHHHHHHHHHHHHTTEEEEE--EEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTTCTCCCC
T ss_pred CCHHHHHHHhCHHHHHHHHHHHHHHHHcCCcccc--eEEEEEEEEeeeceeeCCEEEEEEEEEEEEEEEEECCCCcEeeC
Confidence 3567899999999999999999998888866655 466888877522 46655554444 5555555533322222
Q ss_pred CCCcceEEEE--EEEEc----CCceEeecc
Q 010757 473 EKISTYTTRY--ELSST----KSGWRITDG 496 (502)
Q Consensus 473 sy~~t~~vrY--~L~r~----~g~WkI~~~ 496 (502)
+......++| .|.|. ++.|||++.
T Consensus 116 ~~~~~~~~~e~W~f~r~~~~~~~~W~L~~i 145 (147)
T PF04280_consen 116 DPDKIQEFTEYWTFERDLGSPNPNWRLAGI 145 (147)
T ss_dssp STTS-EEEEEEEEEEE--TTCCCTEEEEEE
T ss_pred CCCCceEEEEEEEEEEeCCCCCCCEEEEEE
Confidence 3333334444 55565 358999875
No 3
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.49 E-value=0.22 Score=56.17 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEE
Q 010757 372 PRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAW 451 (502)
Q Consensus 372 p~lt~~~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~ 451 (502)
|.++ .+.||+.-+.+=+ +|..+-..-.++|++++=..|+.. +.--.|+ +|+.+....+.++++
T Consensus 52 ~ga~---p~~iVrgFl~A~a---~p~~~y~~AR~fLt~~aa~~W~p~-------~~~~V~d----~~~~~~~~~~~~~~~ 114 (591)
T PRK13616 52 PGMD---PDLLLRDFLKASA---DPANRHLAARQFLTESASNAWDDA-------GSALVID----RIDFNESTRSADRVT 114 (591)
T ss_pred CCCC---HHHHHHHHHHhcc---CCcchHHHHHHhcCHHHHcccCCC-------CcEEEEe----cCCcccccCCCccEE
Confidence 4455 6779999997633 455555677899999999999743 2333343 222222223444555
Q ss_pred EEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeec
Q 010757 452 VEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 495 (502)
Q Consensus 452 VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~ 495 (502)
+.++.+=..++-.+|.-.+. ...++..|+|+|.+|+|||.+
T Consensus 115 ~~v~~~~vg~l~~~G~y~~~---~~~~~~~~~l~~~dgqWRIs~ 155 (591)
T PRK13616 115 YTIRANIVGSLSDGGVFEPA---NGSLETPIELVKVDGEWRIDR 155 (591)
T ss_pred EEEEEEEEEEEcCCccEecC---CCCeeeeEEEEEECCEEEecc
Confidence 55555546667666653331 123345999999999999985
No 4
>PRK13615 lipoprotein LpqB; Provisional
Probab=93.66 E-value=0.49 Score=53.10 Aligned_cols=100 Identities=12% Similarity=0.180 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEEEEEEEE
Q 010757 378 LAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVK 457 (502)
Q Consensus 378 ~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~ 457 (502)
+.+.||+.-+.+ +. +|..+-..-.++|++++=..|+.. +.--.|+ .+++ ....+.+..+|.+++
T Consensus 52 ~Pd~iVrgFl~A-~a--~p~~dy~~AR~fLT~~Aa~~W~p~-------~~~~V~d----~~~~-~~~~~~~~~~v~~~~- 115 (557)
T PRK13615 52 GPDDVIAGFVDA-AT--SSADQYGVARQFLSSDFASRWDPF-------ASVVVWE----GQAR-TSEEVDGTYSYSVTT- 115 (557)
T ss_pred CHHHHHHHHHHh-cc--CCCccHHHHHHHcChhHHcccCCC-------CceEEEe----CCcc-ccCCCccEEEEEEEE-
Confidence 367899999988 44 444444556799999999999633 3333443 1222 111234445555544
Q ss_pred EeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeec
Q 010757 458 ESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 495 (502)
Q Consensus 458 E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~ 495 (502)
..++-.+|.-.+. ....+.+..|+|+|.+|+|||.+
T Consensus 116 -~g~ld~~G~y~~~-~~~~~~~~~f~l~k~dgqWRIs~ 151 (557)
T PRK13615 116 -IATVDGQGHYREV-GSDQETRLSFQLVQERGEWRIAK 151 (557)
T ss_pred -EEEECCCCcEEeC-CCCceeeeeEEEEEeCCEEEecc
Confidence 6667666543331 22223456899999999999985
No 5
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=93.59 E-value=0.13 Score=43.27 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=24.2
Q ss_pred CceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEee
Q 010757 447 GRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRIT 494 (502)
Q Consensus 447 ~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~ 494 (502)
|+.|+|..+++ |.+|.. .+.+..|+|.+|.|||+
T Consensus 78 g~~A~V~v~~~-----~~~g~~---------~~~~~~lvk~dg~Wkv~ 111 (111)
T PF12870_consen 78 GDTATVTVKIT-----YKDGKE---------KTFTVPLVKEDGKWKVC 111 (111)
T ss_dssp SSEEEEEEEEE-----ETTS-E---------EEEEEEEEEETTEEEE-
T ss_pred CCEEEEEEEEE-----ECCCCe---------eEEEEEEEEECCEEEeC
Confidence 88999987775 333322 23677899999999985
No 6
>PRK13613 lipoprotein LpqB; Provisional
Probab=93.37 E-value=0.7 Score=52.32 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEE--ecCCCceEEEEEE
Q 010757 378 LAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVT--LSQEGRHAWVEAT 455 (502)
Q Consensus 378 ~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~--~s~~~~rA~VeA~ 455 (502)
..+.||+.-+.+ +..+..+| ..-.++|++.+=..|+.. +.--.|+ +..+.... ...++++++|.++
T Consensus 61 ~P~~iVrgFl~A-~a~~~~dy--~~AR~yLT~~aa~~W~P~-------~~v~V~d--~~~~~~~~~~~~~~~~~~~v~v~ 128 (599)
T PRK13613 61 APAEIVQGFLEA-LTSFDPDY--ETARKYLTGDAAKSWRPG-------GSVTVLA--GAPTVSADREGDREGDDATVTLT 128 (599)
T ss_pred CHHHHHHHHHHh-ccCCcccH--HHHHHHcCHhHHcccCCC-------CceEEEe--CCCcccccccccCCCccEEEEEE
Confidence 367799999988 44445554 456799999999999743 3334443 11111111 1224666777677
Q ss_pred EEEeeeEeccCCCccCCCCCcc-eEEEEEEEEcCCceEeec
Q 010757 456 VKESARLTDTVHPENCDEKIST-YTTRYELSSTKSGWRITD 495 (502)
Q Consensus 456 V~E~a~l~~~~~~~~~~sy~~t-~~vrY~L~r~~g~WkI~~ 495 (502)
.+-..++-.+|.-.+ ..... -++.|+|+|.+|+|||.+
T Consensus 129 ~~~vg~ld~~G~y~p--~~~~~~~~~~~~l~~~dgqWRIs~ 167 (599)
T PRK13613 129 GTRVATIDEDGQYVP--ASGGYYTDVHLTLQDKTGQWRIDR 167 (599)
T ss_pred EEEEEEECCCCCEec--CCCCeeeeeEEEEEecCCeEEecc
Confidence 666777766665333 11122 246799999999999985
No 7
>PRK13614 lipoprotein LpqB; Provisional
Probab=92.39 E-value=1.2 Score=50.14 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEEEEEEEE
Q 010757 378 LAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVK 457 (502)
Q Consensus 378 ~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~ 457 (502)
+.+.||+..+.+ + =+|..+-..-.++|++++=..|+.. +.--.|+ . .+.-+. ..+.+..+|++++
T Consensus 61 ~p~~iVrgFl~A-~--a~~~~~y~~AR~fLT~~aa~~W~p~-------~~~~V~~-~--~~~~~~-~~~~~~~~v~~~v- 125 (573)
T PRK13614 61 SPETVIEGFYAA-G--SGYEDDYAVARQYLTQAAATTWKPD-------QRTLVFR-D--NPRVVK-TGNENEYNYELDV- 125 (573)
T ss_pred CHHHHHHHHHHh-c--cCCcccHHHHHHHcChHHHhccCCC-------CcEEEEe-c--Cccccc-cCCCcEEEEEEEE-
Confidence 367899999977 2 2344344566799999999999633 3333443 1 121111 1144455555555
Q ss_pred EeeeEeccCCCccCCCCCcc-eEEEEEEEEcCCceEeec
Q 010757 458 ESARLTDTVHPENCDEKIST-YTTRYELSSTKSGWRITD 495 (502)
Q Consensus 458 E~a~l~~~~~~~~~~sy~~t-~~vrY~L~r~~g~WkI~~ 495 (502)
..++-.+|.-.+ ....+ .++.|+|+|.+|+|||.+
T Consensus 126 -~g~ld~~G~y~~--~~~~~~~~~~f~l~k~dgqWRIs~ 161 (573)
T PRK13614 126 -AYSVDADGIATQ--FPEGTKETIPVTLTQVDGEWRISK 161 (573)
T ss_pred -EEEEcCCCcEec--CCCCceeeeeEEEEEeCCeEEecc
Confidence 555655554322 11223 335999999999999985
No 8
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=89.09 E-value=1.3 Score=36.31 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=30.2
Q ss_pred eeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEe
Q 010757 435 NLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRI 493 (502)
Q Consensus 435 ~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI 493 (502)
.++++.+++...|+.|.+.... ..+...+|+ .-....+..+++.|++|.|||
T Consensus 56 ~~~~~~~~v~~~gd~a~~~~~~--~~~~~~~g~-----~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 56 SIKFEDVEVRVLGDTAVVRGRW--TFTWRGDGE-----PVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE--EEEETTTTE-----EEEEEEEEEEEEEEETTEEEE
T ss_pred eEEEEEEEEEEECCEEEEEEEE--EEEEecCCc-----eEEEEEEEEEEEEEeCCEEEC
Confidence 3344445544447777665554 322322221 112456788889999999997
No 9
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=88.82 E-value=1.8 Score=36.69 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=36.8
Q ss_pred cEEEeeeeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecc
Q 010757 427 WTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG 496 (502)
Q Consensus 427 ~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~ 496 (502)
.-+.|...+++| ..+++.|.+.....-. +..+++. .....+.++.+.|.+|.|||...
T Consensus 57 ~~~~~~~~~~~v-----~~~~~~a~~~~~~~~~--~~~~~~~-----~~~~~r~t~v~~k~~~~Wki~h~ 114 (121)
T PF13474_consen 57 RPISIEFEDVQV-----SVSGDVAVVTGEFRLR--FRNDGEE-----IEMRGRATFVFRKEDGGWKIVHI 114 (121)
T ss_dssp SEEEEEEEEEEE-----EEETTEEEEEEEEEEE--EECTTCE-----EEEEEEEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEEEEEE-----EECCCEEEEEEEEEEE--EecCCcc-----ceeeEEEEEEEEEECCEEEEEEE
Confidence 355555445444 3357778876665333 3333322 24667899999999999999764
No 10
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=88.19 E-value=3.3 Score=35.50 Aligned_cols=57 Identities=28% Similarity=0.260 Sum_probs=34.6
Q ss_pred eeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecc
Q 010757 434 LNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG 496 (502)
Q Consensus 434 ~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~ 496 (502)
|-+.-..|++ +|+.|++.+.+.-......++ .. .....-+++.+|+|.+|+|||...
T Consensus 70 H~~~~~~v~~--dgd~A~~~~~~~~~~~~~~~g--~~--~~~~~g~y~~~~~r~~g~W~i~~~ 126 (127)
T PF13577_consen 70 HMVTNPVVDV--DGDTATVRSYVLATHRDPDDG--EP--ALWSGGRYTDELVREDGGWRISSR 126 (127)
T ss_dssp EEEEEEEEEE--ETTEEEEEEEEEEEEEEETTT--EE--EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEccceEEEE--cCCEEEEEEEEEEEEEEcCCC--ce--EEEEEEEEEEEEEEECCEEEEEEE
Confidence 5334344444 677888888875443333322 11 222344688889999999999864
No 11
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=87.13 E-value=0.7 Score=41.35 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=42.9
Q ss_pred ChhhhhchhHHHHHHHHHHH--HHHcCcEEEee-------eeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCC
Q 010757 402 KLPEVLDGQMLKVWTDRASE--IAQLGWTYDYS-------LLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCD 472 (502)
Q Consensus 402 ~L~~IL~g~~L~~w~~~a~~--l~~~g~y~~Y~-------l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~ 472 (502)
.+...++..++.++....+. .--.--|+.+. +.+++|..+. .+++.|.|.+++ |.
T Consensus 29 ~~~~yvsk~~~~~l~~~~~~~~~~~D~D~f~~aQD~~~~w~~~i~v~~~~--~~~~~a~v~v~~---------G~----- 92 (120)
T PF12883_consen 29 LMERYVSKETIAKLKKIYQLEQGILDFDYFIKAQDYDPDWVSNIKVGPAK--MDGDCAVVYVTF---------GK----- 92 (120)
T ss_dssp HHHHHB-HHHHHHHHHHH----HHSSSBTTTTBSS--TTSGGG-EEEEEE--TTEEEEEEEETT---------TS-----
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCcCCCCceecccCChhhHhhEEEeecc--ccCCeEEEEEEE---------ec-----
Confidence 36777777777776654431 00011122211 1344555543 356667775554 21
Q ss_pred CCCcceEEEEEEEEcCCceEeecc
Q 010757 473 EKISTYTTRYELSSTKSGWRITDG 496 (502)
Q Consensus 473 sy~~t~~vrY~L~r~~g~WkI~~~ 496 (502)
.+....++.|.|++++|+|||.+-
T Consensus 93 ~~~~~~~~~~~l~ke~g~WkI~~V 116 (120)
T PF12883_consen 93 NNEKKQTVIVCLVKENGRWKIDDV 116 (120)
T ss_dssp TT-EEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCEEEEEEe
Confidence 223456799999999999999874
No 12
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=86.24 E-value=1.4 Score=41.41 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=31.4
Q ss_pred eeeEEEEEEecC--CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757 434 LNLTIDSVTLSQ--EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK 498 (502)
Q Consensus 434 ~~l~I~sV~~s~--~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V 498 (502)
++++|.++.... +++++.|.++|... ++ ..+.|.|.|.+.+|+|||.|..+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~-----~g---------~~i~v~y~l~~~~g~Wki~Dv~i 137 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISK-----DG---------QPIPVDYRLRKKDGKWKIYDVII 137 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET------T---------EEEEEEEEEEEETTEEEEEEEEE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcC-----CC---------CcEEEEEEEEEcCCCeEEEEEEE
Confidence 456677666443 36789997777221 11 45679999999889999999765
No 13
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=84.66 E-value=2.2 Score=41.60 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=34.5
Q ss_pred eeeeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeeccce
Q 010757 431 YSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSK 498 (502)
Q Consensus 431 Y~l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~V 498 (502)
|.-++++|.+.+.. +++++.|..+|. .+++ ..+.|.|.|.+.+|+|||.|..|
T Consensus 108 y~~~~i~v~~~~~~-~~~~~~V~t~i~-----~~~g---------~~i~V~y~l~~~~g~WkV~DV~i 160 (198)
T TIGR03481 108 YAGERFEVEEQQPS-PRGRVIVRSTIV-----SDGG---------DPVKFDYIMRQGQGKWRIVDILA 160 (198)
T ss_pred hcCceEEEeecccC-CCCCEEEEEEEE-----cCCC---------CcEEEEEEEEecCCCeEEEEEEE
Confidence 44355666665433 455677765552 1222 34669999998889999999865
No 14
>COG5517 Small subunit of phenylpropionate dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.53 E-value=3.7 Score=38.95 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=40.9
Q ss_pred EEEEEEecC-CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757 437 TIDSVTLSQ-EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI 499 (502)
Q Consensus 437 ~I~sV~~s~-~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi 499 (502)
.|..|++.. +++ .|++++++..-.|. .+...|++.+ .+|+|...+++|||..-.||
T Consensus 93 ~isNvqi~~~~~~--~~~vR~N~~~~~~r---~~~~~tffg~--t~y~l~~~~e~~~i~~r~iv 149 (164)
T COG5517 93 LISNVQILEVDDG--LVRVRVNYLTFRYR---YDETDTFFGT--TRYDLDVRGEGWRIASRKIV 149 (164)
T ss_pred eeccceEEeecCC--EEEEEEeEEEEEEe---ccccceEeee--EEEEeeccCCcceeeeeEEE
Confidence 677777766 554 46667777766663 3445577776 99999999999999977664
No 15
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=80.36 E-value=12 Score=31.97 Aligned_cols=21 Identities=5% Similarity=0.238 Sum_probs=15.1
Q ss_pred cceEEEEEEEEcCCceEeecc
Q 010757 476 STYTTRYELSSTKSGWRITDG 496 (502)
Q Consensus 476 ~t~~vrY~L~r~~g~WkI~~~ 496 (502)
..++.++.++|.+|+|||...
T Consensus 101 ~~~~~t~~~~~~~g~W~I~~~ 121 (128)
T TIGR02246 101 AAVRLTFVAVKRDGRWLLAAD 121 (128)
T ss_pred cceEEEEEEEeeCCeEEEEec
Confidence 344555568888999999753
No 16
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=76.02 E-value=5.3 Score=30.63 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhccC
Q 010757 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 135 (502)
Q Consensus 76 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~l~ 135 (502)
..+|..+|+++.+. .....++.+..|.|++-.|+.++|...|..-
T Consensus 7 ~~~A~~~~~~~l~~---------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 7 YDEAIELLEKALQR---------------NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHHH---------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788888887754 2335699999999999999999999999544
No 17
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=75.67 E-value=10 Score=35.29 Aligned_cols=55 Identities=15% Similarity=0.310 Sum_probs=35.0
Q ss_pred eeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcC-CceEeec
Q 010757 435 NLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTK-SGWRITD 495 (502)
Q Consensus 435 ~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~-g~WkI~~ 495 (502)
.++..-+++..+|+-|.+.+...=..+ +.+|. .-...+|.+|.|.++. |+|||.-
T Consensus 71 ~f~~~el~v~~~GD~a~~~~~~~~~~~-~~dg~-----~~~~~~Rat~v~rK~~dg~Wk~~~ 126 (137)
T COG4319 71 KFTLEELQVHESGDVAFVTALLLLTGT-KKDGP-----PADLAGRATYVFRKEADGGWKLAH 126 (137)
T ss_pred cceeeeeeeeccCCEEEEEEeeeeecc-CCCCc-----chhheeeeEEEEEEcCCCCEEEEE
Confidence 334445556678998888665522222 22222 2236889999999987 5999863
No 18
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=74.01 E-value=15 Score=31.84 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=28.4
Q ss_pred EEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeec
Q 010757 437 TIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITD 495 (502)
Q Consensus 437 ~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~ 495 (502)
+|.+|++. |+.|.|.+.++.... .+.--..|.+.+|+|||.+
T Consensus 71 ~i~~i~i~--g~~A~a~v~~~~~~~---------------~~~d~~~L~K~dg~WkIv~ 112 (116)
T PF12893_consen 71 SILSIDID--GDVASAKVEYEFPGF---------------WFVDYFTLVKTDGGWKIVS 112 (116)
T ss_dssp EEEEEEEE--TTEEEEEEEEEEETE---------------EEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEE--CCEEEEEEEEEECCC---------------ceEEEEEEEEECCEEEEEE
Confidence 56677665 477887776643311 3345578999999999975
No 19
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=73.76 E-value=41 Score=36.30 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC-----CCceEEEEE
Q 010757 380 EDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ-----EGRHAWVEA 454 (502)
Q Consensus 380 ~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~-----~~~rA~VeA 454 (502)
..||..|.. .|++.|...|.+.++..+....++-.++|.+....+. .|++|++.. +++.+.|-+
T Consensus 256 p~ILeAf~k---------GD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~~iL--~I~~veI~~ak~~e~~~~pviiV 324 (378)
T TIGR00984 256 PEILEAYVK---------GDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKGRIL--DIRGVEIASGKLLEPGDIPVLIV 324 (378)
T ss_pred HHHHHHHHc---------CCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeeeEEe--eecCeEEEEEEecCCCCeEEEEE
Confidence 556666653 5677899999999999999999888999999998765 677777522 345565555
Q ss_pred EE--EEeeeEeccC-CCccCCCCCcceEEEEEEEEc---------C-CceEeec
Q 010757 455 TV--KESARLTDTV-HPENCDEKISTYTTRYELSST---------K-SGWRITD 495 (502)
Q Consensus 455 ~V--~E~a~l~~~~-~~~~~~sy~~t~~vrY~L~r~---------~-g~WkI~~ 495 (502)
+. ++...+.|.. +.....+...-.+|+|..... . .+|||-+
T Consensus 325 ~F~aQqI~~vRd~~tGeVVeGd~d~I~~v~yvWtF~Rd~~~~~~~~~~~Wrl~e 378 (378)
T TIGR00984 325 TFRAQEINVTKNAKSGEVVAGDPDNIQRINYAWVFTRDVEELDNPETLGWKILE 378 (378)
T ss_pred EEEEEEEEEEEcCCCCceeeCCCCceeEEEEEEEEEEcccccCCCCCCceeecC
Confidence 53 3333333433 222233444446788876653 1 4899753
No 20
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=69.16 E-value=12 Score=28.66 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhc
Q 010757 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 76 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
..+|...|+++... .....+.++.+|.|.+-.|+.++|...+.
T Consensus 13 ~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 13 YDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57899999999875 23356999999999999999999999874
No 21
>PF00866 Ring_hydroxyl_B: Ring hydroxylating beta subunit; InterPro: IPR000391 The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonhaem iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centres to a terminal dioxygenase []. Aromatic-ring-hydroxylating dioxygenases oxidise aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilise a mononuclear non-haem iron centre to catalyse the addition of dioxygen to their respective substrates. Naphthalene 1,2-dioxygenase (NDO) from Pseudomonas sp. NCIB9816-4 has a domain structure and iron coordination of the Rieske domain is very similar to that of the cytochrome bc1 domain. The active-site iron centre of one of the alpha subunits is directly connected by hydrogen bonds through a single amino acid, Asp205, to the Rieske [2Fe-2S] centre in a neighbouring alpha subunit. This may be the main route for electron transfer [].; GO: 0003824 catalytic activity, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 1ULJ_B 1ULI_D 1WQL_B 2GBX_D 2GBW_B 2XSH_D 2XR8_X 2XRX_V 2YFL_B 2YFJ_J ....
Probab=69.15 E-value=36 Score=31.26 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCcEE-----EeeeeeeEEEEEEecC--CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEc
Q 010757 415 WTDRASEIAQLGWTY-----DYSLLNLTIDSVTLSQ--EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSST 487 (502)
Q Consensus 415 w~~~a~~l~~~g~y~-----~Y~l~~l~I~sV~~s~--~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~ 487 (502)
...|+..++. +..| .++.| -|..|.|.. +++.++|.+.+ .......+ .+. ..+ ..+.+|.|.+.
T Consensus 54 L~~RV~rl~~-~~~~se~P~srtrh--~vsnv~v~~~~~~~~~~v~s~f--~v~r~r~~-~~~-~~~--~G~~~d~lr~~ 124 (145)
T PF00866_consen 54 LEDRVERLRT-GRAWSEDPPSRTRH--FVSNVRVEETEDGGEIEVRSNF--LVYRSRLD-GDQ-DLF--AGRREDVLRRT 124 (145)
T ss_dssp HHHHHHHHHS-TTHGGGSS--EEEE--EEEEEEEEEESSTTEEEEEEEE--EEEEEETT-TEE-EEE--EEEEEEEEEEE
T ss_pred HHHHHHHHhc-CCccccCCCceeEE--EEcCEEEEEecCCCEEEEEEEE--EEEEEcCC-CcE-EEE--EEEEEEEEEEe
Confidence 4566667644 4444 22225 466666533 67778877766 32222222 121 122 45799999999
Q ss_pred CCceEeeccce
Q 010757 488 KSGWRITDGSK 498 (502)
Q Consensus 488 ~g~WkI~~~~V 498 (502)
+|+|||..=.|
T Consensus 125 ~~~~ki~~R~v 135 (145)
T PF00866_consen 125 DGGLKIARRRV 135 (145)
T ss_dssp SSSEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 99999986555
No 22
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=65.03 E-value=24 Score=33.11 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=31.5
Q ss_pred EEEEEEecC-CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757 437 TIDSVTLSQ-EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI 499 (502)
Q Consensus 437 ~I~sV~~s~-~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi 499 (502)
-|..|++.. +++.+.|.+.. - ++.. ..+. ...=.-..+|.|.+.+|+|||..=.|+
T Consensus 84 ~vsnv~v~~~~~~~i~v~s~f--~--v~~~-R~~~--~~~~~g~~~~~Lr~~~~~~ki~~r~v~ 140 (155)
T TIGR03232 84 NISNVEIEEQDGDVITVRFNW--H--TLSF-RYKT--TDSYFGMSRYTIDFSGESPKIKSKYVV 140 (155)
T ss_pred EEcCEEEEecCCCEEEEEEEE--E--EEEE-cCCC--eEEEEEEEEEEEEEcCCeeEEEEEEEE
Confidence 355566533 56667776655 1 2221 1111 111122467999999999999876554
No 23
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=61.01 E-value=26 Score=34.56 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=32.1
Q ss_pred eeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEc--CCceEeeccce
Q 010757 434 LNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSST--KSGWRITDGSK 498 (502)
Q Consensus 434 ~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~--~g~WkI~~~~V 498 (502)
.+++|...+...+++++.|..+| .+.++. ..+.+.|.|.+. +|+|||.|..|
T Consensus 115 q~i~v~~~~~~~~~~~~~V~t~i------i~~~g~-------~~i~v~y~~~~~~~~g~WkVyDV~i 168 (211)
T PRK15117 115 QTYQIAPEQPLGDATIVPIRVTI------IDPNGR-------PPVRLDFQWRKNSQTGNWQAYDMIA 168 (211)
T ss_pred ceEEEeecccCCCCCEEEEEEEE------EecCCC-------CCEEEEEEEEECCCCCCceEEEEEE
Confidence 45566655544567787886666 221111 134577888764 69999999765
No 24
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=60.01 E-value=27 Score=32.69 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.6
Q ss_pred eEEEEEEEEcCCceEeecccee
Q 010757 478 YTTRYELSSTKSGWRITDGSKI 499 (502)
Q Consensus 478 ~~vrY~L~r~~g~WkI~~~~Vi 499 (502)
-..+|.|+|.+|+|||..=.|+
T Consensus 119 g~~~~~Lrr~~~g~kI~~R~i~ 140 (155)
T TIGR03231 119 GHATYVLKPTGDSWLIRRKHSV 140 (155)
T ss_pred EEEEEEEEEeCCEEEEEEEEEE
Confidence 3567899999999999976554
No 25
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=57.22 E-value=30 Score=30.45 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC-CCceEEEEE
Q 010757 376 ARLAEDIVRKWQNIKSQAFGPDHSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ-EGRHAWVEA 454 (502)
Q Consensus 376 ~~~A~~lVq~Wl~aKa~AlGp~h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~-~~~rA~VeA 454 (502)
.+.++.-+..|..-.-. .+.+.++.+.-+.+.+.....+-.+.|=.-...+++|+...+.. +++.++|-.
T Consensus 4 ~~~~~~f~~aw~~~dy~---------~m~~~~~~~~k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~~~~~~~~~~~ 74 (118)
T PF05223_consen 4 EETAEAFLEAWEKGDYA---------AMYELTSDPSKSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKKDEDDTATVPY 74 (118)
T ss_dssp -HHHHHHHHHHHTT-HH---------HHHHTB-HHHHHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEECCTTEEEEEE
T ss_pred HHHHHHHHHHHHcCCHH---------HHHHhhchhhhccccHHHHHHHHHHHHhhCCccceEEEeccceecCCCceEEEE
Confidence 45678888888764433 34455666663333333222222223322233456665555433 566666655
Q ss_pred EEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEee
Q 010757 455 TVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRIT 494 (502)
Q Consensus 455 ~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~ 494 (502)
++ +-.+- ++.. -+|..+..|++.++.|||.
T Consensus 75 ~~--~~~t~--~g~~------~~~~~~~~l~~~~~~W~V~ 104 (118)
T PF05223_consen 75 TV--TMDTP--AGGI------WTYNYTLTLVKEDDDWKVD 104 (118)
T ss_dssp EE--EEEET--TEEE-------EEEEEEEEEEETTCEEE-
T ss_pred EE--EEEeC--CCCc------eeeEEEEEEEecCCcEEEE
Confidence 55 32232 1111 5777888899999999974
No 26
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=55.00 E-value=66 Score=29.39 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=32.2
Q ss_pred EEEEEEecC-CCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757 437 TIDSVTLSQ-EGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI 499 (502)
Q Consensus 437 ~I~sV~~s~-~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi 499 (502)
-|..+.+.. +++.|.+.+.+. ...+..++ . +..-.....++++|.+|+|||..=.|+
T Consensus 89 ~vsn~~i~~~~~d~a~~~s~~~--v~~~~~~~--~--~~~~~g~~~d~~~r~~~~wri~~R~~~ 146 (160)
T cd00667 89 LVSNVRVLEGDGGEIEVRSNFV--VVRTRLDG--E--SDVFAGGRYDDLRRSEDGLRIASRRVV 146 (160)
T ss_pred EEccEEEEecCCCEEEEEEEEE--EEEEcCCC--e--EEEEEEEEEEEEEEcCCeEEEEEEEEE
Confidence 355555433 577888876552 11122211 1 111233567789998999999875553
No 27
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=49.23 E-value=5.3 Score=36.16 Aligned_cols=27 Identities=37% Similarity=0.464 Sum_probs=25.2
Q ss_pred CChhhHHHHHHHHhhhccCCCCCCCCC
Q 010757 160 NDLPGLCKLLETWLAEVVFPRFRDTSD 186 (502)
Q Consensus 160 ~dLpgLc~~~e~WL~~~vfp~FRDt~~ 186 (502)
+|+-|-|...+.||.-+|.|+||+...
T Consensus 90 GDldgARq~m~dvLAVEVVP~YR~~Ae 116 (123)
T TIGR02267 90 GDLDGARALLLDVLAVEVVPFYRELAQ 116 (123)
T ss_pred cChHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 899999999999999999999998754
No 28
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=45.05 E-value=1.2e+02 Score=28.88 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=31.8
Q ss_pred EEEEEEec--CCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecccee
Q 010757 437 TIDSVTLS--QEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDGSKI 499 (502)
Q Consensus 437 ~I~sV~~s--~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~~Vi 499 (502)
-|..|.+. ..++.|+|++.+.- +...++.. ...-..+..+.|+|.+|+|||..=.|+
T Consensus 110 ~vsNv~V~~~~~~d~a~vrS~~~v---~~~~~~~~---~~~~~G~y~D~l~r~~~gwrI~~R~v~ 168 (183)
T PRK10069 110 LITNVRVEETDIPDEFAVRSNFLL---YRSRGERD---EDFLVGRREDVLRREGDGWRLARRRIV 168 (183)
T ss_pred EEeeEEEEecCCCCEEEEEEEEEE---EEEcCCCc---eEEEEEEEEEEEEEcCCEEEEEEEEEE
Confidence 34445542 34567888887632 11111111 112233455779999999999976554
No 29
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=44.76 E-value=20 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHhcCChHHHHHHhc
Q 010757 110 EFALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 110 Dv~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
|..+..|.|...+|+.++|...+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~ 24 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQ 24 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHH
Confidence 345788999999999999999864
No 30
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.07 E-value=56 Score=33.98 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhccC
Q 010757 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 135 (502)
Q Consensus 76 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~l~ 135 (502)
|++|--+++.|..- ...-.++-.-+|||++.+|+.+||+..|...
T Consensus 189 ~qdAfyifeE~s~k---------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK---------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhhHHHHHHHHhcc---------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999862 1112355567899999999999999998533
No 31
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=43.39 E-value=52 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHhcCChHHHHHHhcc
Q 010757 108 EMEFALERGLCSLLVGKLDECRLWLGL 134 (502)
Q Consensus 108 ~~Dv~~e~a~c~LLLG~~~~a~~~l~l 134 (502)
...+...+|.|..-+|+.++|...|.-
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 467888999999999999999999853
No 32
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.93 E-value=41 Score=33.34 Aligned_cols=106 Identities=11% Similarity=0.165 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHH-------HHHHhcCCCCCCCChhhhhc-hhHHHHHHHH--HHHHHHcCcEEEeeeeeeEEEEEE
Q 010757 373 RMDARLAEDIVRKWQN-------IKSQAFGPDHSLGKLPEVLD-GQMLKVWTDR--ASEIAQLGWTYDYSLLNLTIDSVT 442 (502)
Q Consensus 373 ~lt~~~A~~lVq~Wl~-------aKa~AlGp~h~~~~L~~IL~-g~~L~~w~~~--a~~l~~~g~y~~Y~l~~l~I~sV~ 442 (502)
..|+..+.++|++=+. +=+-+||+.+....=.++-. -...+....+ ++.+. .|.=+.++|....
T Consensus 52 k~dp~~l~~~v~~~l~p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~------~Y~~q~~~v~~~~ 125 (202)
T COG2854 52 KQDPQYLRQIVDQELLPYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALL------DYKGQTLKVKPSR 125 (202)
T ss_pred ccCHHHHHHHHHHHhhhhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH------HccCCCceeCCCc
Confidence 5788888888876432 23456776665542222110 0111111111 12222 1332566777776
Q ss_pred ecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcC--CceEeeccce
Q 010757 443 LSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTK--SGWRITDGSK 498 (502)
Q Consensus 443 ~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~--g~WkI~~~~V 498 (502)
.-.+++.+.|.++| .+++ .++ ..+.|.+...+ |.||+.|+.+
T Consensus 126 ~~~~~~~v~V~~~I------i~~~-~~P-------V~l~f~~r~~~~~G~WKv~Dvi~ 169 (202)
T COG2854 126 PLGDGTDVIVRVEI------IDPG-QKP-------VKLDFLWRKNNQTGKWKVYDVII 169 (202)
T ss_pred ccCCCCeEEEEEEE------ccCC-CCC-------eEEEEEEeecCCcCCeeEEEeee
Confidence 55566677776655 3332 222 23555555555 8999999865
No 33
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=40.80 E-value=9.1 Score=34.76 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=25.4
Q ss_pred CChhhHHHHHHHHhhhccCCCCCCCCC
Q 010757 160 NDLPGLCKLLETWLAEVVFPRFRDTSD 186 (502)
Q Consensus 160 ~dLpgLc~~~e~WL~~~vfp~FRDt~~ 186 (502)
+|+-|-|+-.+.||.-+|.|+||++..
T Consensus 88 GD~dgARq~m~dvLAVEvVP~YR~~Ae 114 (121)
T PF09543_consen 88 GDLDGARQEMRDVLAVEVVPHYREIAE 114 (121)
T ss_pred cCHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 899999999999999999999999764
No 34
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=40.44 E-value=1.3e+02 Score=25.88 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhc
Q 010757 54 FEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 54 ~~~Y~~alA~iA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
...|..+..+...| -..+|..+|++.... .....+++...|.|...+|+.++|..++.
T Consensus 52 ~~~~~la~~~~~~~-------~~~~A~~~~~~~~~~---------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 52 RYWLGLAACCQMLK-------EYEEAIDAYALAAAL---------------DPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc---------------CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555554442 236778788777643 13346889999999999999999999884
No 35
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=38.87 E-value=1.1e+02 Score=32.37 Aligned_cols=59 Identities=10% Similarity=-0.041 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhc
Q 010757 54 FEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 54 ~~~Y~~alA~iA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
.+.|.-+.+|+..| -..+|...|+++... .......++.+|.|++-+|+.++|...+.
T Consensus 37 ~a~~~~a~~~~~~g-------~~~eAl~~~~~Al~l---------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 37 ELYADRAQANIKLG-------NFTEAVADANKAIEL---------------DPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHHHHHcC-------CHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34555566666553 456677767666543 11134678899999999999999999985
Q ss_pred c
Q 010757 134 L 134 (502)
Q Consensus 134 l 134 (502)
.
T Consensus 95 ~ 95 (356)
T PLN03088 95 K 95 (356)
T ss_pred H
Confidence 3
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=38.22 E-value=50 Score=29.92 Aligned_cols=54 Identities=9% Similarity=0.008 Sum_probs=39.5
Q ss_pred hhccCCCchHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhccC
Q 010757 67 AFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 135 (502)
Q Consensus 67 GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~l~ 135 (502)
|+.-.+=....+|...|+++... .....+++..+|.|...+|+.++|...+...
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333444567888899888754 2224588899999999999999999988543
No 37
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=37.86 E-value=43 Score=21.62 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=18.8
Q ss_pred hHHHHHHHHhcCChHHHHHHhc
Q 010757 112 ALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 112 ~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
++.+|-.++..|+.++|+.++.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4667888999999999999874
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=36.15 E-value=66 Score=29.15 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhc
Q 010757 74 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 74 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
.-..+|...+++.... .....+.++-.|.|.+-+|+.++|...+.
T Consensus 72 g~~~~A~~~y~~Al~l---------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 72 KEYTTAINFYGHALML---------------DASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred hhHHHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566788888777754 12245889999999999999999999884
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=34.17 E-value=1.1e+02 Score=26.25 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhc
Q 010757 54 FEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 54 ~~~Y~~alA~iA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
...|.-+++++..| ...+|..+++++... .....++....|.|.+..|+.++|...+.
T Consensus 18 ~~~~~~a~~~~~~~-------~~~~A~~~~~~~~~~---------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 18 EQIYALAYNLYQQG-------RYDEALKLFQLLAAY---------------DPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred HHHHHHHHHHHHcc-------cHHHHHHHHHHHHHh---------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555543 357899999888754 12245888899999999999999998875
Q ss_pred cC
Q 010757 134 LD 135 (502)
Q Consensus 134 l~ 135 (502)
..
T Consensus 76 ~~ 77 (135)
T TIGR02552 76 LA 77 (135)
T ss_pred HH
Confidence 43
No 40
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=34.09 E-value=2.1e+02 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=17.1
Q ss_pred cceEEEEEEEEcCCceEeeccce
Q 010757 476 STYTTRYELSSTKSGWRITDGSK 498 (502)
Q Consensus 476 ~t~~vrY~L~r~~g~WkI~~~~V 498 (502)
......+.+.+.+|+|||..-.+
T Consensus 99 ~~~~~~~~~~~~~g~w~i~~~~~ 121 (124)
T cd00531 99 FAGGQTFVLRPQGGGGKIANRRF 121 (124)
T ss_pred EEEEEEEEEEEeCCEEEEEEEEE
Confidence 44467777788899999987543
No 41
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.91 E-value=16 Score=37.28 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=49.1
Q ss_pred HhcCChHHHHHHhccCCCCCCCCChhHHHHHHhcCCCCCCCCh-hhHHHHH-------HHHhh--hccCCCCCCCCCCCC
Q 010757 120 LLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDL-PGLCKLL-------ETWLA--EVVFPRFRDTSDIRF 189 (502)
Q Consensus 120 LLLG~~~~a~~~l~l~~~~sp~~d~~~~~fi~~~s~~~~~~dL-pgLc~~~-------e~WL~--~~vfp~FRDt~~~~~ 189 (502)
-+|||.++|...++.---+| -+..++.|=.. + --| .|||.+| .+=|+ ++.+|.|-|++.|.+
T Consensus 165 a~leqY~~Ai~iyeqva~~s--~~n~LLKys~K----d--yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckf 236 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS--LDNNLLKYSAK----D--YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKF 236 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccchHHHhHHH----H--HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHH
Confidence 47788888887753221111 23344433332 0 234 9999999 33333 578999999999975
Q ss_pred --CcccccCChhhHHHHHh
Q 010757 190 --KLGDYYDDPTVLRYLER 206 (502)
Q Consensus 190 --~L~~yF~d~~Vq~yle~ 206 (502)
+|-+=-+..++..|-|.
T Consensus 237 lk~L~~aieE~d~e~fte~ 255 (288)
T KOG1586|consen 237 LKDLLDAIEEQDIEKFTEV 255 (288)
T ss_pred HHHHHHHHhhhhHHHHHHH
Confidence 66666666666666665
No 42
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=31.87 E-value=2e+02 Score=20.88 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhcc
Q 010757 74 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 134 (502)
Q Consensus 74 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~l 134 (502)
....+|...|++..... ....+.....+.|++..|+.++|...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 48 GKYEEALEDYEKALELD---------------PDNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHHHhCC---------------CcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45678888888876531 11236778889999999999999988743
No 43
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=31.69 E-value=55 Score=26.37 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhc
Q 010757 55 EAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 55 ~~Y~~alA~iA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
..|.-|.+|.-.| --.+|-.+|+++... ....+.+...|-|.+=||+.++|..+|+
T Consensus 27 ~~~~la~~~~~~~-------~y~~A~~~~~~~~~~----------------~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 27 YLYNLAQCYFQQG-------KYEEAIELLQKLKLD----------------PSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHCHTHH----------------HCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHCC-------CHHHHHHHHHHhCCC----------------CCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3444455665544 236777777663321 2235888888999999999999999875
No 44
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=30.92 E-value=48 Score=22.47 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCC
Q 010757 375 DARLAEDIVRKWQNIKSQAFGPDH 398 (502)
Q Consensus 375 t~~~A~~lVq~Wl~aKa~AlGp~h 398 (502)
.-++|+.+.++=+.+..++||++|
T Consensus 17 ~~~~A~~~~~~al~~~~~~~G~~H 40 (42)
T PF13374_consen 17 RYEEALELLEEALEIRERLLGPDH 40 (42)
T ss_dssp -HHHHHHHHHHHHHHH--------
T ss_pred hcchhhHHHHHHHHHHHHHhcccc
Confidence 356899999999999999999998
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=30.53 E-value=87 Score=23.84 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=35.2
Q ss_pred CchHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcC-ChHHHHHHhc
Q 010757 73 PHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVG-KLDECRLWLG 133 (502)
Q Consensus 73 P~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG-~~~~a~~~l~ 133 (502)
=.-..+|...|.+..+. .....+++.-+|.|..-+| +.++|...+.
T Consensus 16 ~~~~~~A~~~~~~ai~~---------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIEL---------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp TTHHHHHHHHHHHHHHH---------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 34567788888877754 2334678899999999999 7999988764
No 46
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=29.17 E-value=5.1e+02 Score=24.69 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcC
Q 010757 409 GQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTK 488 (502)
Q Consensus 409 g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~ 488 (502)
+.+-..+.+.++.+++++.-..|. ++.+++.++.+++.|.-+++ +... ++ .. .+-..+|+++|.. .+
T Consensus 106 ~~~k~~L~~~a~~ik~~~iSs~F~-----~~~i~~d~~~~~V~V~G~l~---t~~g-~~-~~-~~~~~~y~~~~~~--~~ 172 (187)
T PF05309_consen 106 GELKKQLDEEAEQIKKNNISSVFY-----PKSIEVDPETLTVFVTGTLK---TWIG-DK-KV-SSEDKTYRLQFKY--RN 172 (187)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEE-----EeEEEEecCCCEEEEEEEEE---EEEC-Cc-cc-cceeEEEEEEEEE--eC
Confidence 445566777899999999999985 45677777777888877763 2232 22 22 2444565555554 46
Q ss_pred CceEeecc
Q 010757 489 SGWRITDG 496 (502)
Q Consensus 489 g~WkI~~~ 496 (502)
|.=+|.+.
T Consensus 173 g~~~L~~f 180 (187)
T PF05309_consen 173 GRLWLKSF 180 (187)
T ss_pred CEEEEeee
Confidence 76666554
No 47
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=28.72 E-value=74 Score=20.99 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHhcCChHHHHHHhc
Q 010757 110 EFALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 110 Dv~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
++...+|.|++.+|+.++|...+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~ 25 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQ 25 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHH
Confidence 456788999999999999998874
No 48
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=28.55 E-value=5.3e+02 Score=24.67 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcC
Q 010757 409 GQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTK 488 (502)
Q Consensus 409 g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~ 488 (502)
+.+-.++...|+.++++|.-..|. +..++++.+.+++.|.-+++ +... +.+. .+...+|.+.|... +
T Consensus 106 ~~~k~~L~~~a~~ik~~~vSs~F~-----~~~i~v~~~~~~V~V~G~l~---~~vg--~~~~-~~~~k~y~~~~~~~--~ 172 (181)
T TIGR02761 106 GQIKSRLAKEAEEIKKANASSVFY-----PKSVEWNPQEGTVKVRGHLK---RFVG--GRLL-SDERKTYLLRFSYS--G 172 (181)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEE-----eeeEEEccCCCEEEEEEEEE---EEEC--Ceec-cccceEEEEEEEEc--C
Confidence 345556667899999999999984 45777777777899988874 2332 2232 24456666665554 5
Q ss_pred CceEee
Q 010757 489 SGWRIT 494 (502)
Q Consensus 489 g~WkI~ 494 (502)
|.=+|.
T Consensus 173 g~~~L~ 178 (181)
T TIGR02761 173 GRLVLD 178 (181)
T ss_pred CEEEEe
Confidence 655444
No 49
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=28.35 E-value=72 Score=20.75 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=19.4
Q ss_pred hhHHHHHHHHhcCChHHHHHHhc
Q 010757 111 FALERGLCSLLVGKLDECRLWLG 133 (502)
Q Consensus 111 v~~e~a~c~LLLG~~~~a~~~l~ 133 (502)
....+|.|.+-+|+.++|...+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~ 25 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFE 25 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 45778999999999999999985
No 50
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=27.73 E-value=71 Score=18.70 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHhcCChHHHHHHhcc
Q 010757 110 EFALERGLCSLLVGKLDECRLWLGL 134 (502)
Q Consensus 110 Dv~~e~a~c~LLLG~~~~a~~~l~l 134 (502)
++....|.|...+|+.++|..++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567789999999999999998853
No 51
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.73 E-value=1.8e+02 Score=26.46 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCc-------------CccccccCc-cccccccccchhhHHHHHHHHh
Q 010757 56 AYGVALALVAQAFVGKQPHLIADADNMFKHLQQNK-------------VPTLRDLGS-IYIPLEKHEMEFALERGLCSLL 121 (502)
Q Consensus 56 ~Y~~alA~iA~GF~~rkP~lI~~A~~~l~~L~~~~-------------~~~~~~~~~-~~~~~~~~~~Dv~~e~a~c~LL 121 (502)
.-++-+|+++-|- |.-++|-.|-.+|.+.+ ++.++.--. +..+-.+.-.|+-+--++|.-=
T Consensus 7 ~lLAElAL~atG~-----HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~k 81 (116)
T PF09477_consen 7 RLLAELALMATGH-----HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAWK 81 (116)
T ss_dssp HHHHHHHHHHHTT-----T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh-----HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHHh
Confidence 3477889999986 45678999988888663 122211000 1233556678999999999999
Q ss_pred cCChHHHHHHhc-cCCCCCCCCChhHHHHHHhcC
Q 010757 122 VGKLDECRLWLG-LDSDKSPYRNPAIVDFVLENS 154 (502)
Q Consensus 122 LG~~~~a~~~l~-l~~~~sp~~d~~~~~fi~~~s 154 (502)
||--++++.||. +.... +|+..+|...-+
T Consensus 82 lGL~~~~e~~l~rla~~g----~~~~q~Fa~~~~ 111 (116)
T PF09477_consen 82 LGLASALESRLTRLASSG----SPELQAFAAGFR 111 (116)
T ss_dssp CT-HHHHHHHHHHHCT-S----SHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhCC----CHHHHHHHHHHH
Confidence 999999999996 66533 788888876543
No 52
>PF12707 DUF3804: Protein of unknown function (DUF3804); InterPro: IPR024525 Structural alignments indicate that this family of functionally uncharacterised proteins carry an NTF2-fold with a hydrophobic cavity. Family members also contain two highly conserved tryptophan residues toward their C-terminal ends.; PDB: 3HZP_A.
Probab=26.79 E-value=3.2e+02 Score=25.06 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=31.8
Q ss_pred eEEEEEEecCCCceEEEEEEEEEeeeEeccCCCccCCCCCcceEEEEEEEEcCCceEeecc
Q 010757 436 LTIDSVTLSQEGRHAWVEATVKESARLTDTVHPENCDEKISTYTTRYELSSTKSGWRITDG 496 (502)
Q Consensus 436 l~I~sV~~s~~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~vrY~L~r~~g~WkI~~~ 496 (502)
.+|..+++.. .+-|.---++.|. +.--|.+.+ +-.+++-++++-+|.|||.=|
T Consensus 63 ~kIhrlE~l~-~~~a~~~ftl~~~--FsYKG~~Nd-----Dl~~~T~IFKKvdg~Wk~~Wm 115 (128)
T PF12707_consen 63 IKIHRLEFLS-DDWAMCAFTLGEK--FSYKGTPND-----DLSTYTSIFKKVDGVWKISWM 115 (128)
T ss_dssp EEEEEEEESS-SSEEEEEEEEEEE--EEETTEEEE-----EB-EEEEEEEEETTEEEEEEE
T ss_pred eeeeeEEecC-CCeEEEEEEecce--eEecCCcCC-----chhHHHHHHhhcCCeEEEEEE
Confidence 3677777644 3566554566555 422232222 344677788888999999754
No 53
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=25.84 E-value=2.7e+02 Score=25.44 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=11.4
Q ss_pred EEEEEEEEcCCceEeec
Q 010757 479 TTRYELSSTKSGWRITD 495 (502)
Q Consensus 479 ~vrY~L~r~~g~WkI~~ 495 (502)
+.+|+..+.+|+|||..
T Consensus 105 reT~v~~~~~g~W~ivh 121 (128)
T PF08332_consen 105 RETRVWQKRDGKWKIVH 121 (128)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEeCCeEEEEE
Confidence 34444555689999975
No 54
>PF15655 Imm-NTF2: NTF2 fold immunity protein
Probab=25.61 E-value=51 Score=30.03 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=15.7
Q ss_pred EEEEEEEEcCCceEeec
Q 010757 479 TTRYELSSTKSGWRITD 495 (502)
Q Consensus 479 ~vrY~L~r~~g~WkI~~ 495 (502)
..||.|++.+|.|+|..
T Consensus 101 ~~~f~l~~~~g~W~ID~ 117 (130)
T PF15655_consen 101 KYRFILKRKDGKWKIDK 117 (130)
T ss_pred ceEEEEEEECCEEeEeh
Confidence 58999999999999987
No 55
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=25.28 E-value=1.1e+02 Score=29.70 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=25.6
Q ss_pred cCcEEEeeeeeeEEEEEEecC--CCceEEEEEEEEEeeeEeccCCCccCCCCCcceE--EEEEEEEcCCceEeec
Q 010757 425 LGWTYDYSLLNLTIDSVTLSQ--EGRHAWVEATVKESARLTDTVHPENCDEKISTYT--TRYELSSTKSGWRITD 495 (502)
Q Consensus 425 ~g~y~~Y~l~~l~I~sV~~s~--~~~rA~VeA~V~E~a~l~~~~~~~~~~sy~~t~~--vrY~L~r~~g~WkI~~ 495 (502)
.|.+|+| . +|+++.+.. ++..+.+. +|+-. +.+ ...+++ .+-+|...+|+|.|.+
T Consensus 174 ~~~~~~~--~--~v~~~~~~~~~~~~~~~v~-tVt~~----~~~-------t~~~~~~~y~LtL~~~~~~w~V~~ 232 (232)
T PF12642_consen 174 NGAPYKF--V--KVDDIKVYKTKDKGRVVVQ-TVTFK----DPG-------TKATLTQQYTLTLTKRGGRWYVTK 232 (232)
T ss_dssp ----SEE--E--EEEEEEEEEEETTEEEEE---EEEE----EEE-------TTEEEEEEEEEEEEEETTEEEEE-
T ss_pred CCCceEE--E--eeeeEEeecCCCCcEEEEE-EEEEE----ECC-------CCcEEEEEEEEEEEEcCCEEEEeC
Confidence 4555454 3 888888765 34444443 23222 211 112333 3344555679999864
No 56
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=23.37 E-value=1.8e+02 Score=27.98 Aligned_cols=45 Identities=4% Similarity=-0.034 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhccC
Q 010757 76 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 135 (502)
Q Consensus 76 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~l~ 135 (502)
-.+|..+|++..+. .....+.+...|++++-+|+.++|..++..-
T Consensus 126 ~~~A~~~l~~al~~---------------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 126 TPQTREMIDKALAL---------------DANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred cHHHHHHHHHHHHh---------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 36778888877765 2335688899999999999999999988543
No 57
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=23.21 E-value=2.3e+02 Score=23.38 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhccC
Q 010757 74 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 135 (502)
Q Consensus 74 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~l~ 135 (502)
-|..+|+.|+..|.+---+ .-|-.+=+++|.+=||+.++|...|.-+
T Consensus 7 gL~~ea~aIL~alP~Li~D---------------~~~r~~c~alllfGL~~~~~Al~~L~~~ 53 (66)
T PF06287_consen 7 GLLKEARAILNALPQLIPD---------------EEDRAVCEALLLFGLGEQAAALQLLADS 53 (66)
T ss_pred ccHHHHHHHHHhchhhcCC---------------HhHHHHHHHHHHHHcCChHHHHHHHhCC
Confidence 4678999999999864111 1256677789999999999999999654
No 58
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=23.16 E-value=1.1e+02 Score=31.39 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhccC
Q 010757 74 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 135 (502)
Q Consensus 74 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~l~ 135 (502)
+-+++|--+|+.|.+. . .....+..-+|+|++.+|+.+||+..|.-.
T Consensus 181 e~~~~A~y~f~El~~~-~--------------~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-F--------------GSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-c--------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6778888888888754 1 112345557899999999999999998543
No 59
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=22.22 E-value=1.7e+02 Score=27.98 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHh
Q 010757 53 TFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWL 132 (502)
Q Consensus 53 ~~~~Y~~alA~iA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l 132 (502)
..+.|..+..++..| --.+|...|+.|... -|......+..+..|-|.+-.|+.++|...
T Consensus 5 ~~~lY~~a~~~~~~g-------~y~~Ai~~f~~l~~~------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~- 64 (203)
T PF13525_consen 5 AEALYQKALEALQQG-------DYEEAIKLFEKLIDR------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAA- 64 (203)
T ss_dssp HHHHHHHHHHHHHCT--------HHHHHHHHHHHHHH-------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHH-
T ss_pred HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHH-
Confidence 346788888877766 256899999999865 122223457888999999999999999887
Q ss_pred ccCCCCCCCCChhHHHHHHhcCC
Q 010757 133 GLDSDKSPYRNPAIVDFVLENSK 155 (502)
Q Consensus 133 ~l~~~~sp~~d~~~~~fi~~~s~ 155 (502)
...||..||.
T Consensus 65 -------------~~~fi~~yP~ 74 (203)
T PF13525_consen 65 -------------YERFIKLYPN 74 (203)
T ss_dssp -------------HHHHHHH-TT
T ss_pred -------------HHHHHHHCCC
Confidence 5578999985
No 60
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=20.79 E-value=3.1e+02 Score=25.90 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=44.9
Q ss_pred HHHHhhhccCCCchHHHHHHHHHHHhhCcCccccccCccccccccccchhhHHHHHHHHhcCChHHHHHHhccC
Q 010757 62 ALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLD 135 (502)
Q Consensus 62 A~iA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~~e~a~c~LLLG~~~~a~~~l~l~ 135 (502)
+.+-.+.....|+.+....+..+++-.. ....++..-.+.+..++|+.++|+.++..-
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~----------------~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRR----------------RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455567899999999888888888765 223466667799999999999999998533
No 61
>PRK10694 acyl-CoA esterase; Provisional
Probab=20.04 E-value=2.1e+02 Score=26.04 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=39.1
Q ss_pred CCCCChhhhhchhHHHHHHHHHHHHHHcCcEEEeeeeeeEEEEEEecC---CCceEEEEEEEEEeee
Q 010757 398 HSLGKLPEVLDGQMLKVWTDRASEIAQLGWTYDYSLLNLTIDSVTLSQ---EGRHAWVEATVKESAR 461 (502)
Q Consensus 398 h~~~~L~~IL~g~~L~~w~~~a~~l~~~g~y~~Y~l~~l~I~sV~~s~---~~~rA~VeA~V~E~a~ 461 (502)
.+.+....|--|.+|+ |.+.+..+.+..+-..+. .-++|+.+++.. -|+.++++|.|.+...
T Consensus 21 ~~~N~~g~lfGG~ll~-~~D~~a~i~a~~~~~~~~-vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~ 85 (133)
T PRK10694 21 ADTNANGDIFGGWLMS-QMDIGGAILAKEIAHGRV-VTVRVEGMTFLRPVAVGDVVCCYARCVKTGT 85 (133)
T ss_pred hhcCCCCcEeHHHHHH-HHHHHHHHHHHHHcCCce-EEEEECceEECCCcccCcEEEEEEEEEEccC
Confidence 3445455544455555 999877766543332332 456899999633 5888899999976543
Done!