Query 010761
Match_columns 502
No_of_seqs 161 out of 909
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00177 ccs1 c-type cytochrom 100.0 7.8E-92 1.7E-96 740.0 44.7 397 94-500 1-398 (426)
2 PF05140 ResB: ResB-like famil 100.0 7.5E-76 1.6E-80 630.3 39.4 377 107-501 1-438 (464)
3 COG1333 ResB ResB protein requ 100.0 9E-67 2E-71 541.4 21.9 381 107-498 1-425 (478)
4 PRK10369 heme lyase subunit Nr 98.5 4.9E-06 1.1E-10 91.5 17.9 74 250-342 418-491 (571)
5 TIGR00353 nrfE c-type cytochro 98.3 1.3E-05 2.8E-10 88.7 15.0 78 246-342 421-498 (576)
6 TIGR03145 cyt_nit_nrfE cytochr 97.8 0.00028 6.1E-09 78.8 14.1 78 246-342 478-555 (628)
7 COG1138 CcmF Cytochrome c biog 96.7 0.0039 8.6E-08 69.2 7.8 79 245-342 485-563 (648)
8 TIGR00351 narI respiratory nit 52.0 9.4 0.0002 37.7 2.1 27 249-275 46-72 (224)
9 PF12911 OppC_N: N-terminal TM 41.1 13 0.00029 27.9 0.9 33 95-127 3-38 (56)
10 COG2181 NarI Nitrate reductase 38.8 17 0.00037 36.0 1.6 26 249-274 45-70 (228)
11 cd00255 nidG2 Nidogen, G2 doma 33.4 4.3E+02 0.0093 26.3 10.3 120 232-355 30-180 (224)
12 PF02665 Nitrate_red_gam: Nitr 29.7 32 0.00069 33.9 1.8 25 249-273 44-68 (222)
13 PF11669 WBP-1: WW domain-bind 28.7 40 0.00086 29.2 2.0 25 162-186 17-41 (102)
14 COG2034 Predicted membrane pro 28.6 52 0.0011 27.7 2.6 24 470-493 11-34 (85)
15 PF07474 G2F: G2F domain; Int 23.9 5.2E+02 0.011 25.0 8.9 116 240-358 40-184 (192)
16 PF10808 DUF2542: Protein of u 21.2 83 0.0018 25.9 2.3 25 466-490 48-76 (79)
No 1
>CHL00177 ccs1 c-type cytochrome biogenensis protein; Validated
Probab=100.00 E-value=7.8e-92 Score=740.01 Aligned_cols=397 Identities=39% Similarity=0.734 Sum_probs=367.9
Q ss_pred cchHHHHHHHhcChhHHHHHHHHHHHHhheeEEeccCCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHH
Q 010761 94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLL 173 (502)
Q Consensus 94 ~~~~k~~~~~LsS~klai~LL~lLav~siiGT~IpQ~~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vY~SwWF~~Ll 173 (502)
++|++++|++|+|||+||+||++||++|++||+|||+++.++|.++||+++|+||+.+|+++++|||+|||+||||++|+
T Consensus 1 ~~~~~~~~~~l~Slr~ai~LL~~ia~~s~~GT~i~Q~~~~~~Y~~~yp~~~p~~G~~~~~~~~~LgL~~vY~s~WF~~ll 80 (426)
T CHL00177 1 KNMKQKLLKLLANLKFAIILLLLIAIFSVIGTIIEQDQSIEFYKNNYPLSNPIFGFLSWKIILKLGLDHIYKTWWFLSLL 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEccCCCCHHHHHHhccccccccchhHHHHHHhcCCCccccCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCchhHHHHhhccccccChHhhhccCcccccchhhHHHHHHHHhhcCeEEEeecceEEEecCcccchh
Q 010761 174 VMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFA 253 (502)
Q Consensus 174 ~LL~lnL~~Cti~R~~~~~k~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~gy~v~~~~~~l~a~Kg~~~rlG 253 (502)
+||++||++||++|++|+||.+|+|+++++|+++++++.+.+++.+..+++++.|+++||+++++++.+||+||+++|||
T Consensus 81 ~ll~isL~~Cs~~R~~p~lk~~r~~~~~~~~~~l~kl~~~~~~~~~~~~~~~~~L~~~gy~v~~~~~~l~A~KG~~gr~G 160 (426)
T CHL00177 81 LLFGLSLLLCTLLQQLPSLKIARRWQFYTNKNQFKKLQISTNLKKFSLSKLAYKLKSKNYSIFQQGNKIYAYKGLIGRIA 160 (426)
T ss_pred HHHHHHHhheeecccHHHHHHHhcCcccCChhHhhcCccccccchhHHHHHHHHHHHCCeEEEEeCcEEEEecCcchhhh
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCeeeEEEEE
Q 010761 254 PIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333 (502)
Q Consensus 254 ~~l~HlslllILiGallg~l~g~~G~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~L~~F~i~yy~~G~~~~~~S~l 333 (502)
++++|+|||+||+|+++|+++|++|+++++|||++++.++...|. .+.+++ ++++||||+++||++|+|+||+|||
T Consensus 161 ~~lvHlslIvIL~Gal~g~l~G~~g~~~i~eGe~~~i~~~~~~g~-~~~l~~---~svrl~~F~i~y~~~g~p~qF~Sdl 236 (426)
T CHL00177 161 PIIVHFSMILILIGSILGALSGFTAQEIIPKTEIFHIQNIISSGQ-LSKIPQ---ESARVNDFWITYTPEKSIKQFYSDL 236 (426)
T ss_pred HHHHHHHHHHHHHHHHHhcccceEEEEEEcCCCceecccccCCCC-ccccCC---cEEEEeeEEEEEcCCCCcceEEEEE
Confidence 999999999999999999999999999999999998776544555 344444 3999999999999999999999999
Q ss_pred EEEecCCceeEEEEEEeCcceEECCeEEEecCCCCceeEEEECCCcceEeecCccccCCCccEEEEeecCCCCCCCCCcc
Q 010761 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKG 413 (502)
Q Consensus 334 ~v~~~~G~~~~~~~I~VN~PL~y~G~~iYQss~g~~~l~v~~~~~~~~~l~~~~~~~~g~~~~~~~~~P~~~~~~~~~~~ 413 (502)
++.|++|+++.+++|+|||||+|+|++|||+|||.++++++++++..+++|+..++.+ ++++|+.++|...+. ..+
T Consensus 237 si~d~~g~e~~~~tI~VN~PL~y~G~~iYQss~~~~~~~v~~~~~~~~~~pl~~~~~~-~~~~~~~~lP~~~~~---~~~ 312 (426)
T CHL00177 237 SILNSEGKEIKRKTISVNHPLKYKGLTIYQTDWNIIGLRIKIGNSKIIQIPLIKIENN-NNKIWLTWIPLNKQN---QSG 312 (426)
T ss_pred EEEcCCCCeeeeEEEEecCCEEECCEEEEEeccccccEEEEeCCCceEEEEeccccCC-CCeeEeeecCCCCCC---Ccc
Confidence 9998889899999999999999999999999999999999998887899999887655 478999999964332 245
Q ss_pred eeEEecCcc-eEEEEcCCCceeeeecCCCCCceeeCCeEEEEeeeeeeeEEEEeecCCchHHHHHHHHHHHHHhhhcccc
Q 010761 414 ISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSH 492 (502)
Q Consensus 414 ~~~~~~d~~-~l~~yd~~g~~~~~~~~~~ge~~~~~g~~v~f~~~~~~tGLqVk~DPGvpiVy~Gf~llllGl~isf~~h 492 (502)
.+++.+|.+ .+.+||++|++++...+ |++.++++++++|++..++|||||++|||+|+||+||++||+|++++|++|
T Consensus 313 ~~l~~~d~~~~~~~y~~~g~~~~~~~~--g~~~~~~~~~~~~~~~~~~TGLqi~~dPG~~~vy~G~~ll~lG~~~sy~~~ 390 (426)
T CHL00177 313 LTLVIKDLQGKISLYDNNGNFLGILEL--NEPINLNNTPITLIEIISSTGLQIKSDPGIPIIYVGFFLLMISILISYISY 390 (426)
T ss_pred EEEEEecCCcEEEEEcCCCcEeeEEec--CCcceecceEEEEEEEeecceEEEEcCCCCeehHHHHHHHHHHHheeeecc
Confidence 666788887 68899999999877665 788999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEe
Q 010761 493 TQVKLQFL 500 (502)
Q Consensus 493 rriWv~~~ 500 (502)
||+|+..+
T Consensus 391 ~~iw~~~~ 398 (426)
T CHL00177 391 SQIWLIQK 398 (426)
T ss_pred eEEEEEEe
Confidence 99999875
No 2
>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []. Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.
Probab=100.00 E-value=7.5e-76 Score=630.30 Aligned_cols=377 Identities=33% Similarity=0.504 Sum_probs=307.4
Q ss_pred hhHHHHHHHHHHHHhheeEEeccCCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHHHHHHHHhhhhhhc
Q 010761 107 LPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYT 186 (502)
Q Consensus 107 ~klai~LL~lLav~siiGT~IpQ~~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vY~SwWF~~Ll~LL~lnL~~Cti~ 186 (502)
||+||+||++||++|++||+|||+++.++|.++| |+.+++|+++|||+||||||||++|++||++||++||++
T Consensus 1 mklai~Ll~~la~~s~iGt~ipQ~~~~~~y~~~~-------g~~~~~i~~~Lgl~~vy~S~wF~~ll~ll~~sL~~Cs~~ 73 (464)
T PF05140_consen 1 MKLAIFLLLLLAIASIIGTLIPQGQPPEFYQQNY-------GPFWGPIFDRLGLFDVYSSWWFLLLLVLLALSLIACSID 73 (464)
T ss_pred CcHHHHHHHHHHHHHhceeeecCCCcHHHHHHHh-------CchHHHHHHHcCCCceEecHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999 778899999999999999999999999999999999999
Q ss_pred CchhHHHHhhccccccChHhhhccCcccccc-----hhhHHHHHHHHhhcCeEEEeecc----eEEEecCcccchhhHHH
Q 010761 187 TQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLKGP----SLYAFKGLVGRFAPIGV 257 (502)
Q Consensus 187 R~~~~~k~~r~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~L~~~gy~v~~~~~----~l~a~Kg~~~rlG~~l~ 257 (502)
|++++||.+|+++....++.+++++.+.+++ ++..+++++.|+++||+|.++++ .+||+||+|++||++++
T Consensus 74 R~~~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gyrv~~~~~~~~~~l~a~kg~~~~~G~~l~ 153 (464)
T PF05140_consen 74 RLPPLWKALRRPPPPKPARFLKRMPLSATFPVPGDPEEALERLAALLKKKGYRVRRQEDGGGVFLYAEKGRWGRWGSLLF 153 (464)
T ss_pred HHHHHHHHHcCCCCCCChhHhhcCCceEEEEcCCChHHHHHHHHHHHHhCCcEEEEecCCCcEEEEEEcCcchhhhHHHH
Confidence 9999999999999999999999999998875 56788999999999999987765 49999999999999999
Q ss_pred HHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccC-CCCCcCCCCCCcceEEEEccEEEEEecCCCeeeEEEEEEEE
Q 010761 258 HLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLG-PNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLF 336 (502)
Q Consensus 258 HlslllILiGallg~l~g~~G~v~l~eGe~~~~~~~~~-~g~~~~~~~~~~pf~i~L~~F~i~yy~~G~~~~~~S~l~v~ 336 (502)
|+|||+||+|+++++++|++|++.++|||+++...... .|.++ ...||+++||+|+++||++|+|++|+|+|++.
T Consensus 154 Hlslivil~G~~~~~~~g~~g~~~l~eG~~~~~~~~~~~~g~~~----~~~~f~i~l~~F~~~~~~~g~~~~~~S~v~i~ 229 (464)
T PF05140_consen 154 HLSLIVILIGALLGSLFGFRGQVMLPEGETFDIPYDSFESGPLF----QPLPFSIRLDDFTIEYYPNGSPKQYASDVTIL 229 (464)
T ss_pred HHHHHHHHHHHHhhcccceeEEEEEecCCccccccccccccccc----cccceEEEEeeEEEEecccccccceEEEEEEE
Confidence 99999999999999999999999999999998753322 33322 34688999999999999999999999999999
Q ss_pred ecCCceeEEEEEEeCcceEECCeEEEecCCCCcee-EEEECCCc-------ceEeec---CccccCCCc----cE-EEEe
Q 010761 337 DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSAL-QVLKNDEG-------PFNLAM---APLKVNGDK----KL-FGTF 400 (502)
Q Consensus 337 ~~~G~~~~~~~I~VN~PL~y~G~~iYQss~g~~~l-~v~~~~~~-------~~~l~~---~~~~~~g~~----~~-~~~~ 400 (502)
+++|+++.+++|+|||||+|+|++|||+||| ++. +++...+. ...++. ...+..+.. .+ ...+
T Consensus 230 ~~~~~~~~~~~I~VN~Pl~~~G~~~YQss~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (464)
T PF05140_consen 230 DGGGGEVKRATISVNHPLRYKGYRFYQSSYG-APGFTVTDTSGKLIFDSGQPQFLPQVPGDSISLPGGYQDGYQLQFWDF 308 (464)
T ss_pred cCCCCcceeEEEEecccEEECCEEEEeccCC-CCceEEEecCCcccccccccccccccccceecccccCCCccEEEEEEE
Confidence 9765789999999999999999999999999 764 55542222 122222 111211211 11 2344
Q ss_pred ecCCCCC-------CCCCcceeEEecCcceEEEEcCCC--------ceeeeecCCCCCceeeCCe---------------
Q 010761 401 LPLGDVN-------SPNVKGISMLARDLQSIVIYDQEG--------KFTGVRRPNSKLPIDIDGT--------------- 450 (502)
Q Consensus 401 ~P~~~~~-------~~~~~~~~~~~~d~~~l~~yd~~g--------~~~~~~~~~~ge~~~~~g~--------------- 450 (502)
.|..... ++.+.+|++ .+.++++++ +.+.......++++..+++
T Consensus 309 ~~~~~~~~~g~~~~s~~~~nPa~------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (464)
T PF05140_consen 309 FPDFVPNDNGPPSKSPDPNNPAV------VLEVYDGDGGVDGSGEPQNVYFLNVPEGEQIAVGGYNQQAFNLMGLFLLPG 382 (464)
T ss_pred EcccccccCCCcccCCCCCCceE------EEEEECCCCcceeccccceeEEecCcccchhhcccchhhhhcccccccCCC
Confidence 4432111 122333433 255565442 2222333333444555666
Q ss_pred --EEEEeeee--eeeEEEEeecCCchHHHHHHHHHHHHHhhh-cccceeEEEEEee
Q 010761 451 --KIVIVDAI--GSTGLDLKTDPGVPIVYAGFGALMLTTCIS-FLSHTQVKLQFLE 501 (502)
Q Consensus 451 --~v~f~~~~--~~tGLqVk~DPGvpiVy~Gf~llllGl~is-f~~hrriWv~~~~ 501 (502)
+++|++.+ +||||||++|||+|+||+||+++|+|++++ |++|||+|++++|
T Consensus 383 ~~~v~~~~~~~~~~tGLqV~~DPG~~~V~~G~~llv~Gl~~sfy~~hRRvWv~~~~ 438 (464)
T PF05140_consen 383 PYRVTFDGFRQRYYTGLQVKKDPGVPIVYLGFILLVVGLFLSFYIRHRRVWVRVEP 438 (464)
T ss_pred ceEEEEEEeccceEEEEEEEeCCCchHHHHHHHHHHHHHHHhheecceEEEEEEEc
Confidence 99999777 899999999999999999999999999999 5899999999987
No 3
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-67 Score=541.41 Aligned_cols=381 Identities=29% Similarity=0.446 Sum_probs=298.5
Q ss_pred hhHHHHHHHHHHHHhheeEEecc---CCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHHHHHHHHhhhh
Q 010761 107 LPLAIGEMAAIAALMALGTAIEQ---GEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183 (502)
Q Consensus 107 ~klai~LL~lLav~siiGT~IpQ---~~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vY~SwWF~~Ll~LL~lnL~~C 183 (502)
||+||+||++||++|++||++|| +++.+.|..++ |+.+|+|++.|||+|||+||||++|++||++||++|
T Consensus 1 mr~AI~LL~llaiaSi~GTvl~Q~~~N~~~~~y~~~f-------g~~~gq~~~~Lgl~~Vy~SwWfl~iivlL~VSLv~C 73 (478)
T COG1333 1 MRLAIALLLLLAIASIPGTVLPQRGLNQPYPDYYAEF-------GGLWGQWIDQLGLFDVYSSWWFLAIIVLLGVSLVGC 73 (478)
T ss_pred ChhHHHHHHHHHHHhcccceeeccccCCCCcchHHHh-------CchHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999 45555555554 677889999999999999999999999999999999
Q ss_pred hhcCchhHHHHhhccccccChHhhhccCcccccc-----hhhHHHHHHHHhhcCeEEEee-cceEEEecCcccchhhHHH
Q 010761 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLK-GPSLYAFKGLVGRFAPIGV 257 (502)
Q Consensus 184 ti~R~~~~~k~~r~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~L~~~gy~v~~~-~~~l~a~Kg~~~rlG~~l~ 257 (502)
+++|.++.+|+.| +++...|+++++++++.+++ ++..+++++.|+++||+++++ +.+++|+||+.+|||+|++
T Consensus 74 ~lpr~~~~~ra~r-~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~~~i~AeKG~~~r~G~ii~ 152 (478)
T COG1333 74 SLPRFPALYRALR-AKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGSVSIAAEKGRFSRWGPIIF 152 (478)
T ss_pred cccccHHHHHHhh-cccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccceeEEeccccccchhhHHH
Confidence 9999999999877 67789999999999998874 347889999999999999988 6789999999999999999
Q ss_pred HHHHHHHHHhhhcc-cccceEEEEEEeCCceee-----eccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCeeeEEE
Q 010761 258 HLAMLLIMAGGTLS-ATGSFRGSVTVPQGLNFV-----VGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS 331 (502)
Q Consensus 258 HlslllILiGallg-~l~g~~G~v~l~eGe~~~-----~~~~~~~g~~~~~~~~~~pf~i~L~~F~i~yy~~G~~~~~~S 331 (502)
|+|||+||+|++++ .+.|+....+|++||+.+ ..+.+..|..++. ...+||++++++|.++|+++|++++|+|
T Consensus 153 HiaLliil~Gal~~~~~~Gm~~~~~V~~Ge~~~~~lpa~~~~fr~g~~~~~-~~l~~f~v~v~rf~~dy~~~g~~~~f~s 231 (478)
T COG1333 153 HIALLIILVGALLDFFYEGMVVGEIVPDGETNCSALPAANDKFRAGPTADG-TILLPFCVRVNRFGIDYLPTGQAYSFAS 231 (478)
T ss_pred HHHHHHHHHHHHHhhcccceeEeEEecCCCcccccccccccccccCCccce-eeeehHHHHHHhcccccccccchhhhcC
Confidence 99999999999999 688888888999999982 2234445554443 2336889999999999999999999999
Q ss_pred EEEEEecCCceeEEEEEEeCcceEECCeEEEecCCCCceeEEEECCCcceEeec------------Cc-ccc-CCC-ccE
Q 010761 332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAM------------AP-LKV-NGD-KKL 396 (502)
Q Consensus 332 ~l~v~~~~G~~~~~~~I~VN~PL~y~G~~iYQss~g~~~l~v~~~~~~~~~l~~------------~~-~~~-~g~-~~~ 396 (502)
|+++.|.+++++.+++|+|||||+|+|++|||.+||.++........+....|. .+ .|. +|. ..+
T Consensus 232 dI~v~~~~~~~~~~~~IrVN~PLr~~G~~vYq~d~G~~~~~t~~~~~~~~rt~~~~~~~~~~~~~l~~~fd~~~G~~v~i 311 (478)
T COG1333 232 DISVTDGQGEEVAEYTIRVNHPLRYGGVRVYQADYGIAPTFTVTFPLGATRTPTVLWRTDIPQTLLSSVFDPPNGMKVAI 311 (478)
T ss_pred CceEEcCCcceeeeeeEEccCCEeecceEEEEecCccccceeEeccCcccccccccccccccccCccceecCCCcceEEe
Confidence 999999778999999999999999999999999999998533331111111111 11 111 122 234
Q ss_pred EEEeecCCCCCCCCCcceeEEecCcc-eEEEEc-------CCCceeee--ecCCCCCceeeCC---eEEEEeeeeeeeEE
Q 010761 397 FGTFLPLGDVNSPNVKGISMLARDLQ-SIVIYD-------QEGKFTGV--RRPNSKLPIDIDG---TKIVIVDAIGSTGL 463 (502)
Q Consensus 397 ~~~~~P~~~~~~~~~~~~~~~~~d~~-~l~~yd-------~~g~~~~~--~~~~~ge~~~~~g---~~v~f~~~~~~tGL 463 (502)
+..+.|+...... ..++...++++ +..++| .+|..... ..+..|+..++++ +++.+.+...+|||
T Consensus 312 ~g~~~Pt~~~~~~--~~~s~~~k~~~~Pav~~d~~~~~l~~~~~l~~~~rv~~~~g~~~~v~~~~~~~~~~~~~~~ftgl 389 (478)
T COG1333 312 QGLLIPTKQLNGR--NGLSSRFKNLNAPAVIIDIYRGRLTASGPLGEIERVALQAGQEVLVNDGPETKVGFLEAVGFTGL 389 (478)
T ss_pred eccccCceeeccc--ccccccccccCCCEEEeehhhhhcccccccchhhhhhhccCceeeccCCcceeeeccccccccce
Confidence 5667784211110 11222222222 233334 33332221 2334566677765 45889999999999
Q ss_pred EEeecCCchHHHHHHHHHHHHHhhhc-ccceeEEEE
Q 010761 464 DLKTDPGVPIVYAGFGALMLTTCISF-LSHTQVKLQ 498 (502)
Q Consensus 464 qVk~DPGvpiVy~Gf~llllGl~isf-~~hrriWv~ 498 (502)
||++|||.|+||.|++++|+|++.++ +.|||+|++
T Consensus 390 qV~~Dp~~~~v~vg~~i~Mvglv~s~~~~~rrvWl~ 425 (478)
T COG1333 390 QVSKDPGQPWVYVGGAILMVGLVQSLYWRHRRVWLR 425 (478)
T ss_pred eeccCCCCceehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999985 677899998
No 4
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=98.49 E-value=4.9e-06 Score=91.46 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCeeeE
Q 010761 250 GRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQF 329 (502)
Q Consensus 250 ~rlG~~l~HlslllILiGallg~l~g~~G~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~L~~F~i~yy~~G~~~~~ 329 (502)
+++|.++.|+|+.++++|.+.++.++.+..+.+.+||+.+.. +|+++.++.+.+. +.+....
T Consensus 418 ~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~G~~~~~~----------------~y~~~~~~~~~~~--~~n~~~~ 479 (571)
T PRK10369 418 VQLPALLAHAGVLLFAAGIVVSSVSRQEISLNLQPGQQVTLA----------------GYTFRFERLDLQA--KGNYTSE 479 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccceeEEEEECCCCcEEEe----------------cEEEEEeeeeecc--CCCceeE
Confidence 468999999999999999999999999999999999998653 3488888886654 3344445
Q ss_pred EEEEEEEecCCce
Q 010761 330 HSDLSLFDIGGKE 342 (502)
Q Consensus 330 ~S~l~v~~~~G~~ 342 (502)
+++++|.+ ||++
T Consensus 480 ~a~~~v~~-~g~~ 491 (571)
T PRK10369 480 KAIIALFR-HQQR 491 (571)
T ss_pred EEEEEEEE-CCEE
Confidence 67888876 6643
No 5
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=98.28 E-value=1.3e-05 Score=88.68 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=62.0
Q ss_pred cCcccchhhHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCC
Q 010761 246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE 325 (502)
Q Consensus 246 Kg~~~rlG~~l~HlslllILiGallg~l~g~~G~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~L~~F~i~yy~~G~ 325 (502)
|...+++|.++.|+|+.++++|.+.++.++.+..+.+.+||+.+.+ +|+++.++.+....||..
T Consensus 421 ~~~~~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~L~pGet~~~~----------------~y~~~y~~~~~~~gpn~~ 484 (576)
T TIGR00353 421 KIKRSQWGMLLAHLGVALTAAGIVFSQNFSVEIDVRLKPGQSVTLG----------------GYTFRFRCVDLEAGPNYT 484 (576)
T ss_pred cCChhhhhhhhhHHHHHHHHHHHHHHcccceeEEEEECCCCcEEEc----------------CEEEEEeeeeecCCCCce
Confidence 3456789999999999999999999999999999999999998653 358899998776555543
Q ss_pred eeeEEEEEEEEecCCce
Q 010761 326 VKQFHSDLSLFDIGGKE 342 (502)
Q Consensus 326 ~~~~~S~l~v~~~~G~~ 342 (502)
.-+++++|.+ ||++
T Consensus 485 --a~~a~~~V~k-~g~~ 498 (576)
T TIGR00353 485 --GEKAIIDVTK-DGQP 498 (576)
T ss_pred --EEEEEEEEEE-CCEE
Confidence 3457777765 6653
No 6
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=97.80 E-value=0.00028 Score=78.84 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=61.9
Q ss_pred cCcccchhhHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCC
Q 010761 246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE 325 (502)
Q Consensus 246 Kg~~~rlG~~l~HlslllILiGallg~l~g~~G~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~L~~F~i~yy~~G~ 325 (502)
|...+++|.++.|+|+.++++|.+.++.++.+-.+.+.+||+...+ +|+++.++.+....||.
T Consensus 478 ~~~~~~~G~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~Ge~~~~~----------------~y~~~~~~~~~~~~pn~- 540 (628)
T TIGR03145 478 TLKLRQLGMVLAHLGVAICAIGAIMVSYFGSEIGVRLAPQQQQPLG----------------GYEFRYQGFENVIGPNY- 540 (628)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhccccceeEEEECCCCeEEEc----------------CEEEEEeeceecCCCCc-
Confidence 3456789999999999999999999999999999999999998653 24788888776654443
Q ss_pred eeeEEEEEEEEecCCce
Q 010761 326 VKQFHSDLSLFDIGGKE 342 (502)
Q Consensus 326 ~~~~~S~l~v~~~~G~~ 342 (502)
...+++++|.+ ||++
T Consensus 541 -~~~~a~~~v~~-~g~~ 555 (628)
T TIGR03145 541 -TAEQANFSVTK-NGKI 555 (628)
T ss_pred -eeEEEEEEEEE-CCEE
Confidence 34566888876 6643
No 7
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0039 Score=69.25 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=60.8
Q ss_pred ecCcccchhhHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCC
Q 010761 245 FKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSG 324 (502)
Q Consensus 245 ~Kg~~~rlG~~l~HlslllILiGallg~l~g~~G~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~L~~F~i~yy~~G 324 (502)
.+...+.+|..+.|++++++++|++.+..++.|-.+.+.+|++..+. .+++++++++.+..|
T Consensus 485 ~~~~~s~~g~~LaH~Gv~l~~~Gi~~s~~~~~E~~v~l~~G~~~~l~----------------~y~~~~~~~~~~~gp-- 546 (648)
T COG1138 485 VALKRSAWGMVLAHLGVALIAVGIAMSSTYRYEREVRLRPGQSVTLA----------------GYTFTLDDVDIAQGP-- 546 (648)
T ss_pred ccCChhHHHHHHHHhhHHHhhhhhheehhhhheeeEEecCCceEEee----------------eEEEEEeeeeeccCC--
Confidence 45567889999999999999999999999999999999999998664 247888888776544
Q ss_pred CeeeEEEEEEEEecCCce
Q 010761 325 EVKQFHSDLSLFDIGGKE 342 (502)
Q Consensus 325 ~~~~~~S~l~v~~~~G~~ 342 (502)
+...-..++++.+ +|++
T Consensus 547 ny~~~~a~~~~~~-~~~~ 563 (648)
T COG1138 547 NYTAEVAIVSVTR-NGRE 563 (648)
T ss_pred ceeeeeeEEEEee-ccch
Confidence 3334445555554 5544
No 8
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=52.04 E-value=9.4 Score=37.74 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=23.6
Q ss_pred ccchhhHHHHHHHHHHHHhhhcccccc
Q 010761 249 VGRFAPIGVHLAMLLIMAGGTLSATGS 275 (502)
Q Consensus 249 ~~rlG~~l~HlslllILiGallg~l~g 275 (502)
+-+||+.++|.|++++++|.+.+.+.-
T Consensus 46 ~l~~gs~lFH~gil~v~~gH~~g~l~p 72 (224)
T TIGR00351 46 GMNLASNLFHIGILGIFVGHFFGMLTP 72 (224)
T ss_pred cHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 567999999999999999999977554
No 9
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=41.07 E-value=13 Score=27.91 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=22.3
Q ss_pred chHHHHHHHhcChhHHHHH---HHHHHHHhheeEEe
Q 010761 95 RLPRRVLAALSNLPLAIGE---MAAIAALMALGTAI 127 (502)
Q Consensus 95 ~~~k~~~~~LsS~klai~L---L~lLav~siiGT~I 127 (502)
..++.+|+.|.+-|+|++- ++++.+++++|.++
T Consensus 3 s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred CHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 5678889988888877654 44455556666444
No 10
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=38.82 E-value=17 Score=35.96 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.4
Q ss_pred ccchhhHHHHHHHHHHHHhhhccccc
Q 010761 249 VGRFAPIGVHLAMLLIMAGGTLSATG 274 (502)
Q Consensus 249 ~~rlG~~l~HlslllILiGallg~l~ 274 (502)
.-++|+.++|.|++++++|..+|-+.
T Consensus 45 ~L~~gs~lFH~GIl~v~~gH~~gll~ 70 (228)
T COG2181 45 GLWIGSNLFHIGILLVLLGHAIGLLT 70 (228)
T ss_pred ceeecCchHHHHHHHHHHHHHhheeC
Confidence 45689999999999999999999865
No 11
>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.
Probab=33.37 E-value=4.3e+02 Score=26.27 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=66.1
Q ss_pred CeEEEeecceEEEecCcccchhhHHHHHHHHHHHHhhhcc--------------cccceEEEEEEeC-CceeeeccccC-
Q 010761 232 GYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS--------------ATGSFRGSVTVPQ-GLNFVVGDVLG- 295 (502)
Q Consensus 232 gy~v~~~~~~l~a~Kg~~~rlG~~l~HlslllILiGallg--------------~l~g~~G~v~l~e-Ge~~~~~~~~~- 295 (502)
.|-|..+|....|-...-..+|+-+-=+.-+.-.+|.+.. ..|..+.++.... ||.+.+...++
T Consensus 30 syVv~~dGR~ytais~ip~~~G~~L~~l~~ig~~igWlFA~e~~~~~NGfslTGG~F~~~~~v~F~~~ge~l~I~Q~~~G 109 (224)
T cd00255 30 SYVVTSDGRAYTAISNIPESLGPSLRPLAPIGGTIGWLFALEQGGAKNGFSLTGGEFTRQAEVTFYTGGEKLRITQVARG 109 (224)
T ss_pred EEEEecCCeEEEEEecCChHhchhhhhhhhhcCceeeEEEeecCCccCcEeccCceEEEEEEEEEcCCCEEEEEEEEEec
Confidence 3555566777777776666667666555544444444431 1233345555556 77766543211
Q ss_pred -------------CCCCcCCCCCCcceEEEEccEEEEEecC--CCeeeEEEEEEEEecCCceeEEEEEEeCcceE
Q 010761 296 -------------PNGFLSTPTDAFSTEVHVNKFYMDYYDS--GEVKQFHSDLSLFDIGGKEVMRKTISVNDPLR 355 (502)
Q Consensus 296 -------------~g~~~~~~~~~~pf~i~L~~F~i~yy~~--G~~~~~~S~l~v~~~~G~~~~~~~I~VN~PL~ 355 (502)
+|. .-.+|. +.++++++++-+|... |....+.|+.--+++.| +.....-.+||-..
T Consensus 110 lD~~~~L~~~~~i~G~-vP~i~~--~a~v~i~dY~E~Y~~t~pg~l~s~str~~~v~~~~-~~~~~~y~~~Q~I~ 180 (224)
T cd00255 110 LDSHGHLLLDTVISGR-VPQVPA--GATVHIEDYTELYHYTGPGVLTSSSTREYTVDEGG-ESQTLSYQWNQTIT 180 (224)
T ss_pred cCccCeEEEEEEEEee-cCCCCC--CCeEEeCCCeeeEEEcCCCEEEEEEeeEEEEecCC-CceEEeEEeeeEEE
Confidence 122 112333 4599999999998543 67777777765555333 33334444444443
No 12
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=29.70 E-value=32 Score=33.86 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.5
Q ss_pred ccchhhHHHHHHHHHHHHhhhcccc
Q 010761 249 VGRFAPIGVHLAMLLIMAGGTLSAT 273 (502)
Q Consensus 249 ~~rlG~~l~HlslllILiGallg~l 273 (502)
+-+||.+++|.|++++++|.+++.+
T Consensus 44 ~L~~~s~lfH~Gil~v~~gH~~gll 68 (222)
T PF02665_consen 44 WLWWGSYLFHWGILLVFFGHVVGLL 68 (222)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHh
Confidence 5569999999999999999887654
No 13
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=28.67 E-value=40 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.176 Sum_probs=18.1
Q ss_pred cccccHHHHHHHHHHHHHhhhhhhc
Q 010761 162 HMFSSPIFLGLLVMMGLSLMACTYT 186 (502)
Q Consensus 162 ~vY~SwWF~~Ll~LL~lnL~~Cti~ 186 (502)
..|..|||.++++++.+-..+|+..
T Consensus 17 ~~~~~w~FWlv~~liill~c~c~~~ 41 (102)
T PF11669_consen 17 YYYELWYFWLVWVLIILLSCCCACR 41 (102)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999877777645566653
No 14
>COG2034 Predicted membrane protein [Function unknown]
Probab=28.57 E-value=52 Score=27.66 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=20.7
Q ss_pred CchHHHHHHHHHHHHHhhhcccce
Q 010761 470 GVPIVYAGFGALMLTTCISFLSHT 493 (502)
Q Consensus 470 GvpiVy~Gf~llllGl~isf~~hr 493 (502)
|..++++||.+..+|+.+.++++.
T Consensus 11 g~~li~iGf~LifLGi~l~~~~~~ 34 (85)
T COG2034 11 GLILIFIGFLLIFLGIVLPAFSPF 34 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCc
Confidence 678899999999999999887654
No 15
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=23.87 E-value=5.2e+02 Score=25.03 Aligned_cols=116 Identities=14% Similarity=0.199 Sum_probs=62.4
Q ss_pred ceEEEecCcccchhhHHHHHHHHHHHHhhhcc--------------cccceEEEEEEeCCceeeecccc---CCCCC---
Q 010761 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS--------------ATGSFRGSVTVPQGLNFVVGDVL---GPNGF--- 299 (502)
Q Consensus 240 ~~l~a~Kg~~~rlG~~l~HlslllILiGallg--------------~l~g~~G~v~l~eGe~~~~~~~~---~~g~~--- 299 (502)
..-.|-.+.=..+|+.+-=+..++-.+|.+.. ..|..+.++.-..||.+.+...+ +..+.
T Consensus 40 r~ytaIs~IP~~~G~~l~~L~~ig~~igWlfA~e~~~a~NGfslTGG~F~~~s~v~F~tGe~l~itq~~~GlD~~~~L~~ 119 (192)
T PF07474_consen 40 RAYTAISNIPPSVGPSLRPLVPIGGPIGWLFAKEQGGAQNGFSLTGGEFNRESEVEFATGERLTITQTARGLDSDGYLLL 119 (192)
T ss_dssp EEEEEEES--CCCCGGGTT-THHHHHHHHHT-EE-TT---HHHHHTTEEEEEEEEEESSS--EEEEEEEEEE-TTS-EEE
T ss_pred EEEEEeecCChHHhhhhhHHHHhhhheeeeEEeccCCccCceeeeccEEEEEEEEEEeCCCEEEEEEEecccCCCCcEEE
Confidence 34455556666778777777777777776553 24666677888899887664321 11110
Q ss_pred -------cCCCCCCcceEEEEccEEEEEec--CCCeeeEEEEEEEEecCCceeEEEEEEeCcceEECC
Q 010761 300 -------LSTPTDAFSTEVHVNKFYMDYYD--SGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGG 358 (502)
Q Consensus 300 -------~~~~~~~~pf~i~L~~F~i~yy~--~G~~~~~~S~l~v~~~~G~~~~~~~I~VN~PL~y~G 358 (502)
.-.++. ..++++++|+-+|-. .|......++--..+.+| +.....-.+||-..|+.
T Consensus 120 d~~i~G~vP~i~~--~a~v~i~dy~E~Y~~tgpg~l~s~Str~~~~~~~~-~~~~~~y~~~qtI~Y~~ 184 (192)
T PF07474_consen 120 DTVISGQVPQIPA--GADVHIQDYTEEYVQTGPGQLTSSSTREFTVDGGG-SSRTISYRWNQTITYDE 184 (192)
T ss_dssp EEEEEEEE----T--T-EEE---EEEEEEEE-TTEEEEEEEEEEEEE-----EEEEEEEEEEEEE---
T ss_pred EEEEeccCCCCCC--CCeEEeCChhheeEEecCCcEEEEEEEEEEEcCCC-ceEEEEEEEEEEEEEcc
Confidence 112333 349999999999854 567777777766666444 55677888999888865
No 16
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=21.15 E-value=83 Score=25.87 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.6
Q ss_pred eecCCchH----HHHHHHHHHHHHhhhcc
Q 010761 466 KTDPGVPI----VYAGFGALMLTTCISFL 490 (502)
Q Consensus 466 k~DPGvpi----Vy~Gf~llllGl~isf~ 490 (502)
.+||+..+ +|+||..+.+|+++.++
T Consensus 48 ~~~P~~ywsYi~~Y~G~gil~~gm~Iyll 76 (79)
T PF10808_consen 48 AKNPGQYWSYIFAYFGCGILSLGMIIYLL 76 (79)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhheeE
Confidence 45777764 67899999999998753
Done!