Query 010761
Match_columns 502
No_of_seqs 161 out of 909
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c6a_A Ubiquitin-protein ligas 21.1 20 0.0007 25.6 0.0 18 23-40 20-37 (46)
2 1jb0_X Photosystem I subunit P 19.9 58 0.002 21.6 2.0 22 160-184 7-28 (35)
3 1gl4_A Nidogen-1, entactin; im 12.4 6E+02 0.021 24.7 8.1 118 238-358 84-235 (285)
4 3j1r_A Archaeal adhesion filam 10.1 1.8E+02 0.0063 18.1 2.2 14 109-122 5-18 (26)
5 2cr8_A MDM4 protein; ZF-ranbp 9.1 71 0.0024 23.3 0.1 17 24-40 19-35 (53)
6 3u2g_A S-layer protein MA0829; 8.3 7.7E+02 0.026 24.0 7.1 52 308-368 123-175 (286)
7 3lqz_A HLA class II histocompa 7.7 3.9E+02 0.013 23.6 4.4 37 348-386 1-37 (181)
8 1xrd_A LH-1, light-harvesting 7.6 1.4E+02 0.0049 21.7 1.1 29 467-495 8-38 (52)
9 3mhp_C TIC62_peptide, ferredox 7.5 1.5E+02 0.0051 18.5 1.0 11 3-13 14-24 (26)
10 1q16_C Cytochrome B-NR, respir 7.2 1.8E+02 0.006 26.9 1.9 25 249-273 47-71 (225)
No 1
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.10 E-value=20 Score=25.55 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.4
Q ss_pred cccCcchhhhccccccce
Q 010761 23 STFNPQLHTLFNRCITLS 40 (502)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (502)
.+|||-++..|+||-.|+
T Consensus 20 ~~~N~Pl~r~C~rCw~LR 37 (46)
T 2c6a_A 20 NEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp CCEECSSCSSCTTTCCCC
T ss_pred cccCCCccchhhHHHhhc
Confidence 389999999999998554
No 2
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=19.87 E-value=58 Score=21.63 Aligned_cols=22 Identities=5% Similarity=0.200 Sum_probs=16.0
Q ss_pred CCcccccHHHHHHHHHHHHHhhhhh
Q 010761 160 FDHMFSSPIFLGLLVMMGLSLMACT 184 (502)
Q Consensus 160 l~~vY~SwWF~~Ll~LL~lnL~~Ct 184 (502)
...+|++-|.+ +||++|.++.-
T Consensus 7 p~y~frt~Wal---llLaINflVAa 28 (35)
T 1jb0_X 7 PTYAFRTFWAV---LLLAINFLVAA 28 (35)
T ss_dssp CCCCHHHHHHH---HHHHHHHHHHH
T ss_pred CCccHHHHHHH---HHHHHHHHHHH
Confidence 35788888987 56778877654
No 3
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=12.38 E-value=6e+02 Score=24.72 Aligned_cols=118 Identities=12% Similarity=0.053 Sum_probs=64.2
Q ss_pred ecceEEEecCcccchhhHHHHHHHHHHHHhhhcc--------------cccceEEEEEEeCC-ceeeecccc---C----
Q 010761 238 KGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS--------------ATGSFRGSVTVPQG-LNFVVGDVL---G---- 295 (502)
Q Consensus 238 ~~~~l~a~Kg~~~rlG~~l~HlslllILiGallg--------------~l~g~~G~v~l~eG-e~~~~~~~~---~---- 295 (502)
+|..-.|-.+.-..+|+-+.=+.-+.-.+|.+.. ..|..+.++.-..| |.+.+...+ +
T Consensus 84 dgr~ytais~Ip~~~G~~l~~L~~ig~~igWlfA~e~~~~~NGfslTgG~F~r~s~v~F~~g~e~l~i~q~~~GlD~~g~ 163 (285)
T 1gl4_A 84 HGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGH 163 (285)
T ss_dssp TCEEEEEEESCCHHHHGGGTTCTHHHHHHHHHTCEECTTCCCHHHHHTTEEEEEEEEEETTSSSCEEEEEEEECBCTTSC
T ss_pred CCeEEEEeccCChhhchhhhhhhhhccceeeeeecccCccccceEeeCceEEEEEEEEEcCCCeEEEEEEEEEccCcCCc
Confidence 3444556666666777777666666666666553 23444445555556 555543221 1
Q ss_pred -------CCCCcCCCCCCcceEEEEccEEEEEe-cCCCeeeEEEEEEEEec---CC-ceeEEEEEEeCcceEECC
Q 010761 296 -------PNGFLSTPTDAFSTEVHVNKFYMDYY-DSGEVKQFHSDLSLFDI---GG-KEVMRKTISVNDPLRYGG 358 (502)
Q Consensus 296 -------~g~~~~~~~~~~pf~i~L~~F~i~yy-~~G~~~~~~S~l~v~~~---~G-~~~~~~~I~VN~PL~y~G 358 (502)
+|. .-.++. ..+|++++|+-+|- ..|....+.++--..+. || .........+||-..|++
T Consensus 164 L~~~~~i~G~-vP~i~~--~~~v~i~dy~E~Y~~~~g~l~s~str~~~~~~~~~~g~~~~~~~~y~~~qtI~y~~ 235 (285)
T 1gl4_A 164 LTISTELEGR-VPQIPY--GASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITFQE 235 (285)
T ss_dssp EECEEEEEEE-ECCCCT--TCEEECCCEEEEEEEETTEEEEEEEEEEEEECCSSTTCCCCEEEEEEEEEEEECCC
T ss_pred EEEEEEEeee-cCCCCC--CCeeecCCcceEEEEcCCEEEEEeeeeEEeccccccCcccceeEeEEEeeEEEecc
Confidence 111 112333 34999999999884 34566666665444442 12 112445566666666543
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=10.06 E-value=1.8e+02 Score=18.06 Aligned_cols=14 Identities=29% Similarity=0.126 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhh
Q 010761 109 LAIGEMAAIAALMA 122 (502)
Q Consensus 109 lai~LL~lLav~si 122 (502)
+|..||+++|++++
T Consensus 5 VA~~lLIviav~aa 18 (26)
T 3j1r_A 5 IATLLLILIAVAAA 18 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57778888877654
No 5
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=9.12 E-value=71 Score=23.27 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.7
Q ss_pred ccCcchhhhccccccce
Q 010761 24 TFNPQLHTLFNRCITLS 40 (502)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ 40 (502)
+|||-++.-|.||-.|+
T Consensus 19 k~N~Pl~ryC~rCwaLR 35 (53)
T 2cr8_A 19 KFNSPSKRYCFRCWALR 35 (53)
T ss_dssp CEECSSCCBCTTTCCBC
T ss_pred ccCCCccchhHHHHHhh
Confidence 89999999999999443
No 6
>3u2g_A S-layer protein MA0829; DUF1608 domain, cell envelop, surface layer, unknow function, structural protein; HET: CIT; 2.30A {Methanosarcina acetivorans} PDB: 3u2h_A
Probab=8.33 E-value=7.7e+02 Score=24.03 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=33.7
Q ss_pred ceEEEEccEEEEEecCCCeeeEEEEEEEEecCCceeEEEEEEeCcceEECCeEEEe-cCCCC
Q 010761 308 STEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQ-TDWSF 368 (502)
Q Consensus 308 pf~i~L~~F~i~yy~~G~~~~~~S~l~v~~~~G~~~~~~~I~VN~PL~y~G~~iYQ-ss~g~ 368 (502)
.|+++++...+ +|. ...|++.. ||+++..+.|+++.--.-.-.-+|- .+.|-
T Consensus 123 GY~L~i~~Id~----dG~----kV~leL~K-DG~~Vds~vv~~~~~~~~~~t~~y~~~di~~ 175 (286)
T 3u2g_A 123 GYAIEAKQVDV----DGE----KVWLEFTK-DGEFVDDEIISVSTADDEANTWDVELDDIED 175 (286)
T ss_dssp TEEEEEEEECT----TSS----EEEEEEEE-TTEEEEEEEEECSSSCGGGGEEEEEESCBTT
T ss_pred CeEEEEEEEeC----CCC----EEEEEEEe-CCcEeeEEEEccCCCCcccceEEEEccccCC
Confidence 35788876553 455 45777776 9999999999998532112244555 55553
No 7
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune, disulfide bond, glycoprotein, immune respo membrane, MHC II, transmembrane, immune system; HET: NAG NDG; 3.25A {Homo sapiens}
Probab=7.65 E-value=3.9e+02 Score=23.65 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=24.6
Q ss_pred EEeCcceEECCeEEEecCCCCceeEEEECCCcceEeecC
Q 010761 348 ISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMA 386 (502)
Q Consensus 348 I~VN~PL~y~G~~iYQss~g~~~l~v~~~~~~~~~l~~~ 386 (502)
|..||-..| ..|||++---.-..+..||++-+.+++.
T Consensus 1 ~~~~~~~~~--~~~~~~~~~~g~~~~~~DGee~~~~D~~ 37 (181)
T 3lqz_A 1 IKADHVSTY--AAFVQTHRPTGEFMFEFDEDEMFYVDLD 37 (181)
T ss_dssp CCCSEEEEE--EEEEESSSSCEEEEEEETTEEEEEEETT
T ss_pred CcccceEEE--EEEEeCCCCCeeEEEEECCceEEEEECC
Confidence 346788788 8999986432224677788876666553
No 8
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=7.55 E-value=1.4e+02 Score=21.73 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=23.4
Q ss_pred ecCCchHHHHHHHHHHHHHhhhc--ccceeE
Q 010761 467 TDPGVPIVYAGFGALMLTTCISF--LSHTQV 495 (502)
Q Consensus 467 ~DPGvpiVy~Gf~llllGl~isf--~~hrri 495 (502)
-||-..+|-.+.+++++++.++| ++..|+
T Consensus 8 fDPrr~Lva~~~fl~vlAl~IHfilLSt~~f 38 (52)
T 1xrd_A 8 FDPRQALVGLATFLFVLALLIHFILLSTERF 38 (52)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 48888899999999999999986 355444
No 9
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=7.49 E-value=1.5e+02 Score=18.47 Aligned_cols=11 Identities=55% Similarity=0.984 Sum_probs=8.8
Q ss_pred CCCCCCCCccc
Q 010761 3 TLKPPTLPTRT 13 (502)
Q Consensus 3 ~~~~~~~~~~~ 13 (502)
.||||+-|+-+
T Consensus 14 dlKPPsSPsPs 24 (26)
T 3mhp_C 14 DLKPPSSPSPT 24 (26)
T ss_dssp TSSCSSCSSCC
T ss_pred ccCCCCCCCCC
Confidence 58999998754
No 10
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=7.17 E-value=1.8e+02 Score=26.91 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=20.4
Q ss_pred ccchhhHHHHHHHHHHHHhhhcccc
Q 010761 249 VGRFAPIGVHLAMLLIMAGGTLSAT 273 (502)
Q Consensus 249 ~~rlG~~l~HlslllILiGallg~l 273 (502)
+-++++.++|.+++++++|.+.+.+
T Consensus 47 ~l~~~~~l~H~~il~l~~g~~~~~l 71 (225)
T 1q16_C 47 GMNLASNLFHIGILGIFVGHFFGML 71 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456999999999999999886553
Done!