Query 010761
Match_columns 502
No_of_seqs 161 out of 909
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 13:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010761.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010761hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iaka2 d.19.1.1 (A:1-81) Clas 35.4 18 0.0013 27.1 4.0 27 358-385 10-37 (82)
2 d1uvqa2 d.19.1.1 (A:2-84) Clas 30.0 22 0.0016 26.7 3.7 28 358-386 11-39 (83)
3 d1y5ic1 f.21.3.1 (C:1-225) Res 20.3 19 0.0014 31.5 2.0 26 248-273 46-71 (225)
4 d2c6aa1 g.41.11.1 (A:290-335) 13.6 19 0.0014 24.0 0.0 18 23-40 20-37 (46)
5 d2cr8a1 g.41.11.1 (A:8-48) MDM 11.4 25 0.0018 22.8 0.1 18 23-40 11-28 (41)
6 d2o3ga1 d.145.1.4 (A:180-255) 9.7 1.7E+02 0.013 20.4 4.6 32 438-469 43-76 (76)
7 d1goia1 b.72.2.1 (A:447-498) C 6.8 1.3E+02 0.0094 19.8 2.3 15 354-369 22-36 (52)
8 d2iqia1 c.51.6.2 (A:32-209) Hy 6.6 4.5E+02 0.033 20.6 6.6 47 309-355 94-142 (178)
9 d1zhva2 d.58.18.8 (A:62-127) H 5.8 1.6E+02 0.012 20.5 2.6 21 216-236 46-66 (66)
10 d1f1sa2 b.1.18.2 (A:171-248) H 5.2 4E+02 0.029 18.8 4.4 37 314-350 35-74 (78)
No 1
>d1iaka2 d.19.1.1 (A:1-81) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
Probab=35.43 E-value=18 Score=27.12 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=21.8
Q ss_pred CeEEEecCCCCce-eEEEECCCcceEeec
Q 010761 358 GITIYQTDWSFSA-LQVLKNDEGPFNLAM 385 (502)
Q Consensus 358 G~~iYQss~g~~~-l~v~~~~~~~~~l~~ 385 (502)
|..||| +||.+. ....+||++.|..++
T Consensus 10 g~~~yq-s~~psGe~~~efDGdE~fyvDl 37 (82)
T d1iaka2 10 GITVYQ-SPGDIGQYTFEFDGDELFYVDL 37 (82)
T ss_dssp EEEEEE-ETTTEEEEEEEETTEEEEEEET
T ss_pred ceeEEE-ecCCCccEeeeeCCcEEEEEEc
Confidence 789999 677775 578889988888777
No 2
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Probab=29.97 E-value=22 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=22.1
Q ss_pred CeEEEecCCCCce-eEEEECCCcceEeecC
Q 010761 358 GITIYQTDWSFSA-LQVLKNDEGPFNLAMA 386 (502)
Q Consensus 358 G~~iYQss~g~~~-l~v~~~~~~~~~l~~~ 386 (502)
|.++|| +||.+. ....+||++.|..++.
T Consensus 11 g~~~yq-s~~psGey~~~fDGdE~fyvDl~ 39 (83)
T d1uvqa2 11 GVNLYQ-FYGPSGQYTHEFDGDEQFYVDLE 39 (83)
T ss_dssp EEEEEE-TTTTEEEEEEEETTEEEEEEETT
T ss_pred cceEEE-ecCCCccEeeccCCcEEEEEEcc
Confidence 789999 668775 5778899888877773
No 3
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=20.30 E-value=19 Score=31.53 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.5
Q ss_pred cccchhhHHHHHHHHHHHHhhhcccc
Q 010761 248 LVGRFAPIGVHLAMLLIMAGGTLSAT 273 (502)
Q Consensus 248 ~~~rlG~~l~HlslllILiGallg~l 273 (502)
++.++|..++|.+++++++|.+++.+
T Consensus 46 k~l~~~~~lfH~gi~~~f~gh~~g~l 71 (225)
T d1y5ic1 46 KGMNLASNLFHIGILGIFVGHFFGML 71 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999888754
No 4
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.65 E-value=19 Score=23.98 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.3
Q ss_pred cccCcchhhhccccccce
Q 010761 23 STFNPQLHTLFNRCITLS 40 (502)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (502)
.+|||-++..|+||-.|+
T Consensus 20 ~~~N~Pl~ryC~rCWaLR 37 (46)
T d2c6aa1 20 NEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp CCEECSSCSSCTTTCCCC
T ss_pred cccCCcchhHhHHHHHHh
Confidence 489999999999998554
No 5
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.36 E-value=25 Score=22.76 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.2
Q ss_pred cccCcchhhhccccccce
Q 010761 23 STFNPQLHTLFNRCITLS 40 (502)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (502)
..|||-++..|.||-.|+
T Consensus 11 ~~~N~Pl~ryC~rCWalR 28 (41)
T d2cr8a1 11 KKFNSPSKRYCFRCWALR 28 (41)
T ss_dssp CCEECSSCCBCTTTCCBC
T ss_pred cccCCcchhHHHHHHHHH
Confidence 478999999999998554
No 6
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=9.69 E-value=1.7e+02 Score=20.36 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=23.3
Q ss_pred cCCCCCceeeCCeEEEEeeee--eeeEEEEeecC
Q 010761 438 RPNSKLPIDIDGTKIVIVDAI--GSTGLDLKTDP 469 (502)
Q Consensus 438 ~~~~ge~~~~~g~~v~f~~~~--~~tGLqVk~DP 469 (502)
.|..|+.+.++|+++++.+.. +-.-++|.+-|
T Consensus 43 iP~~Ge~v~~~~~~f~V~~~~~~rI~~V~v~~lP 76 (76)
T d2o3ga1 43 IPDVGDFADFHGWRFEVVEKEGQRIERVKITKLP 76 (76)
T ss_dssp CCCTTCEEEETTEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCCCEEEECCEEEEEEEeeCCeEEEEEEEECc
Confidence 356789999999988887665 34556776655
No 7
>d1goia1 b.72.2.1 (A:447-498) Chitinase B, C-terminal domain {Serratia marcescens [TaxId: 615]}
Probab=6.85 E-value=1.3e+02 Score=19.77 Aligned_cols=15 Identities=33% Similarity=1.001 Sum_probs=11.8
Q ss_pred eEECCeEEEecCCCCc
Q 010761 354 LRYGGITIYQTDWSFS 369 (502)
Q Consensus 354 L~y~G~~iYQss~g~~ 369 (502)
+.|+|| |.|+.|+++
T Consensus 22 VSy~GY-iWQaKW~~~ 36 (52)
T d1goia1 22 VSYQGY-VWQTKWGYI 36 (52)
T ss_dssp EEETTE-EEEESSSCB
T ss_pred EeeceE-EEEEeeeee
Confidence 467786 789999875
No 8
>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=6.64 E-value=4.5e+02 Score=20.64 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=29.5
Q ss_pred eEEEEccEEEEEecCCCe-eeEEEEEEEEec-CCceeEEEEEEeCcceE
Q 010761 309 TEVHVNKFYMDYYDSGEV-KQFHSDLSLFDI-GGKEVMRKTISVNDPLR 355 (502)
Q Consensus 309 f~i~L~~F~i~yy~~G~~-~~~~S~l~v~~~-~G~~~~~~~I~VN~PL~ 355 (502)
..+.+.+|+.++..++.. -...-+.++.+. +|+.+..+.+.+..|+.
T Consensus 94 L~~~i~~F~~~~~~~~~~~a~~~~~~~l~~~~~~~v~~~~~f~~~~p~~ 142 (178)
T d2iqia1 94 LAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSS 142 (178)
T ss_dssp EEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECS
T ss_pred EEEEEEEEEEEecCCCceEEEEEEEEEEecCCCCcEEEEEEEEEEEeCC
Confidence 489999999998655433 233344555554 34445567777777753
No 9
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.84 E-value=1.6e+02 Score=20.47 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=17.8
Q ss_pred cchhhHHHHHHHHhhcCeEEE
Q 010761 216 LPRASIQDLGVILMGAGYEVF 236 (502)
Q Consensus 216 ~~~~~~~~~~~~L~~~gy~v~ 236 (502)
+|++..+++.+.|++.||+|.
T Consensus 46 Vp~~~~~~A~~~L~~~g~~v~ 66 (66)
T d1zhva2 46 VRSNDLEKTADLLANAGHSLL 66 (66)
T ss_dssp EEGGGHHHHHHHHHHTTCEEE
T ss_pred EEHHHHHHHHHHHHHccCEeC
Confidence 467788999999999999873
No 10
>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain {Streptococcus agalactiae [TaxId: 1311]}
Probab=5.16 E-value=4e+02 Score=18.83 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=24.1
Q ss_pred ccEEEEEecCC--Ce-eeEEEEEEEEecCCceeEEEEEEe
Q 010761 314 NKFYMDYYDSG--EV-KQFHSDLSLFDIGGKEVMRKTISV 350 (502)
Q Consensus 314 ~~F~i~yy~~G--~~-~~~~S~l~v~~~~G~~~~~~~I~V 350 (502)
++=.+-.-.+| .| ++=.+.|.|.|.+|+++..-.+.|
T Consensus 35 ens~i~~V~nGil~Pl~eG~T~vkVsdkdGk~vk~iPl~v 74 (78)
T d1f1sa2 35 TNPSLGKIVGGILYPNATGSTTVKISDKSGKIIKEVPLSV 74 (78)
T ss_dssp SSGGGEEEETTEEEECSCEEEEEEEECTTCCEEEEEEEEE
T ss_pred cCCceeeeecceEEEcccCceEEEEeccCCcEEEEEeeEE
Confidence 44334334455 23 666789999989999887655554
Done!