Your job contains 1 sequence.
>010762
MADATENPAAPATLEPLPSTEPKRSWGDVAEEEEEKEKEERKQQQQQQTANTSEDKSTAE
LDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMK
FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT
RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA
KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV
TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTK
NSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN
LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI
KVTEVRNSDEDFKAALKAAGLL
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010762
(502 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2101993 - symbol:LOS4 "LOW EXPRESSION OF OSMOT... 1548 6.8e-159 1
SGD|S000005572 - symbol:DBP5 "Cytoplasmic ATP-dependent R... 820 9.4e-82 1
CGD|CAL0000067 - symbol:DBP5 species:5476 "Candida albica... 810 1.1e-80 1
MGI|MGI:1353582 - symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) bo... 792 8.7e-79 1
POMBASE|SPBC12C2.06 - symbol:SPBC12C2.06 "cytoplasmic ATP... 792 8.7e-79 1
RGD|68381 - symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box heli... 789 1.8e-78 1
UNIPROTKB|F1PIZ6 - symbol:DDX25 "Uncharacterized protein"... 782 1.0e-77 1
UNIPROTKB|F1RVF0 - symbol:LOC100512980 "Uncharacterized p... 782 1.0e-77 1
UNIPROTKB|Q9UHL0 - symbol:DDX25 "ATP-dependent RNA helica... 781 1.3e-77 1
UNIPROTKB|Q2TBP1 - symbol:DDX25 "ATP-dependent RNA helica... 780 1.6e-77 1
UNIPROTKB|F1MSI6 - symbol:DDX25 "ATP-dependent RNA helica... 777 3.4e-77 1
UNIPROTKB|J3QL17 - symbol:DDX25 "ATP-dependent RNA helica... 769 2.4e-76 1
MGI|MGI:99526 - symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box... 742 1.7e-73 1
UNIPROTKB|F1S758 - symbol:LOC100523329 "Uncharacterized p... 740 2.8e-73 1
UNIPROTKB|E9PR46 - symbol:DDX25 "ATP-dependent RNA helica... 488 3.2e-73 2
UNIPROTKB|Q9NUU7 - symbol:DDX19A "ATP-dependent RNA helic... 739 3.6e-73 1
UNIPROTKB|I3LC00 - symbol:DDX19A "Uncharacterized protein... 739 3.6e-73 1
RGD|1303136 - symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box p... 739 3.6e-73 1
RGD|1593382 - symbol:Ddx19b "DEAD (Asp-Glu-Ala-As) box po... 739 3.6e-73 1
UNIPROTKB|Q3ZBV2 - symbol:DDX19A "ATP-dependent RNA helic... 738 4.6e-73 1
UNIPROTKB|Q5ZMC1 - symbol:DDX19B "Uncharacterized protein... 736 7.5e-73 1
UNIPROTKB|E9PTL9 - symbol:Ddx19b "Protein Ddx19b" species... 736 7.5e-73 1
UNIPROTKB|E2RR50 - symbol:DDX19A "Uncharacterized protein... 734 1.2e-72 1
UNIPROTKB|H3BQK0 - symbol:DDX19B "HCG1998531, isoform CRA... 733 1.6e-72 1
UNIPROTKB|Q9UMR2 - symbol:DDX19B "ATP-dependent RNA helic... 733 1.6e-72 1
ZFIN|ZDB-GENE-020419-30 - symbol:ddx19 "DEAD/H (Asp-Glu-A... 729 4.1e-72 1
ZFIN|ZDB-GENE-080721-12 - symbol:zgc:193690 "zgc:193690" ... 727 6.7e-72 1
UNIPROTKB|F1S432 - symbol:DDX19B "Uncharacterized protein... 726 8.6e-72 1
DICTYBASE|DDB_G0281553 - symbol:helC "DEAD-box RNA helica... 725 1.1e-71 1
UNIPROTKB|F1MUT6 - symbol:DDX19B "Uncharacterized protein... 725 1.1e-71 1
UNIPROTKB|J9NSS1 - symbol:DDX25 "Uncharacterized protein"... 723 1.8e-71 1
UNIPROTKB|Q9DGP9 - symbol:deadsouth "ATP-dependent RNA he... 715 1.3e-70 1
UNIPROTKB|I3L352 - symbol:DDX19A "ATP-dependent RNA helic... 712 2.6e-70 1
UNIPROTKB|B4DRZ7 - symbol:DDX19A "ATP-dependent RNA helic... 708 7.0e-70 1
WB|WBGene00011580 - symbol:ddx-19 species:6239 "Caenorhab... 695 3.9e-68 1
FB|FBgn0024804 - symbol:Dbp80 "Dead box protein 80" speci... 690 5.6e-68 1
ASPGD|ASPL0000065093 - symbol:AN7659 species:162425 "Emer... 681 5.1e-67 1
UNIPROTKB|H9KYU4 - symbol:DDX25 "Uncharacterized protein"... 673 3.6e-66 1
UNIPROTKB|I3L0H8 - symbol:DDX19A "ATP-dependent RNA helic... 628 2.1e-61 1
CGD|CAL0001638 - symbol:FAL1 species:5476 "Candida albica... 606 4.5e-59 1
SGD|S000002428 - symbol:FAL1 "Nucleolar protein required ... 602 1.2e-58 1
FB|FBgn0037573 - symbol:eIF4AIII "eIF4AIII" species:7227 ... 599 2.5e-58 1
ZFIN|ZDB-GENE-031030-2 - symbol:eif4a1a "eukaryotic trans... 595 6.6e-58 1
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 594 8.4e-58 1
ZFIN|ZDB-GENE-040120-6 - symbol:eif4a1b "eukaryotic trans... 592 1.4e-57 1
POMBASE|SPAC1006.07 - symbol:SPAC1006.07 "translation ini... 588 3.6e-57 1
UNIPROTKB|Q3SZ54 - symbol:EIF4A1 "Eukaryotic initiation f... 583 1.2e-56 1
UNIPROTKB|F1P895 - symbol:EIF4A1 "Uncharacterized protein... 583 1.2e-56 1
UNIPROTKB|J9NY67 - symbol:EIF4A1 "Uncharacterized protein... 583 1.2e-56 1
UNIPROTKB|P60842 - symbol:EIF4A1 "Eukaryotic initiation f... 583 1.2e-56 1
UNIPROTKB|A6M928 - symbol:EIF4A1 "Uncharacterized protein... 583 1.2e-56 1
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 583 1.2e-56 1
MGI|MGI:95303 - symbol:Eif4a1 "eukaryotic translation ini... 583 1.2e-56 1
UNIPROTKB|Q6P3V8 - symbol:Eif4a1 "Protein Eif4a1" species... 583 1.2e-56 1
WB|WBGene00018007 - symbol:F33D11.10 species:6239 "Caenor... 582 1.6e-56 1
WB|WBGene00022029 - symbol:Y65B4A.6 species:6239 "Caenorh... 581 2.0e-56 1
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 576 6.8e-56 1
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 576 6.8e-56 1
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican... 572 1.8e-55 1
UNIPROTKB|Q8JFP1 - symbol:EIF4A2 "Eukaryotic initiation f... 572 1.8e-55 1
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas... 572 1.8e-55 1
UNIPROTKB|Q3SZ65 - symbol:EIF4A2 "Eukaryotic initiation f... 571 2.3e-55 1
UNIPROTKB|E2R3J1 - symbol:EIF4A2 "Uncharacterized protein... 571 2.3e-55 1
UNIPROTKB|Q14240 - symbol:EIF4A2 "Eukaryotic initiation f... 571 2.3e-55 1
UNIPROTKB|A6M930 - symbol:EIF4A2 "Eukaryotic translation ... 571 2.3e-55 1
MGI|MGI:106906 - symbol:Eif4a2 "eukaryotic translation in... 571 2.3e-55 1
RGD|1309225 - symbol:Eif4a2 "eukaryotic translation initi... 571 2.3e-55 1
UNIPROTKB|F8WFX2 - symbol:Eif4a2 "Eukaryotic initiation f... 571 2.3e-55 1
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac... 568 4.8e-55 1
ASPGD|ASPL0000014018 - symbol:fal1 species:162425 "Emeric... 567 6.1e-55 1
UNIPROTKB|Q2NL22 - symbol:EIF4A3 "Eukaryotic initiation f... 567 6.1e-55 1
UNIPROTKB|E2RDZ4 - symbol:EIF4A3 "Uncharacterized protein... 567 6.1e-55 1
UNIPROTKB|P38919 - symbol:EIF4A3 "Eukaryotic initiation f... 567 6.1e-55 1
UNIPROTKB|A6M931 - symbol:EIF4A3 "Eukaryotic initiation f... 567 6.1e-55 1
RGD|1591139 - symbol:Eif4a3 "eukaryotic translation initi... 567 6.1e-55 1
UNIPROTKB|Q5ZM36 - symbol:EIF4A3 "Eukaryotic initiation f... 566 7.8e-55 1
ZFIN|ZDB-GENE-040426-2802 - symbol:eif4a2 "eukaryotic tra... 566 7.8e-55 1
ZFIN|ZDB-GENE-040426-915 - symbol:eif4a3 "eukaryotic tran... 566 7.8e-55 1
GENEDB_PFALCIPARUM|PF14_0655 - symbol:PF14_0655 "RNA heli... 563 1.6e-54 1
UNIPROTKB|Q8IKF0 - symbol:H45 "Helicase 45" species:36329... 563 1.6e-54 1
TAIR|locus:2091191 - symbol:EIF4A-III "eukaryotic initiat... 562 2.1e-54 1
DICTYBASE|DDB_G0269192 - symbol:tifA "eukaryotic translat... 560 3.4e-54 1
POMBASE|SPAC1F5.10 - symbol:SPAC1F5.10 "ATP-dependent RNA... 559 4.3e-54 1
WB|WBGene00002083 - symbol:inf-1 species:6239 "Caenorhabd... 559 4.3e-54 1
UNIPROTKB|I3LLD5 - symbol:I3LLD5 "Uncharacterized protein... 541 3.5e-52 1
TAIR|locus:2030285 - symbol:AT1G72730 species:3702 "Arabi... 534 1.9e-51 1
UNIPROTKB|F1RZ83 - symbol:EIF4A3 "Eukaryotic initiation f... 529 6.5e-51 1
UNIPROTKB|J9NU36 - symbol:EIF4A1 "Uncharacterized protein... 527 1.1e-50 1
UNIPROTKB|Q58DE5 - symbol:DDX19L "ATP-dependent RNA helic... 523 2.8e-50 1
UNIPROTKB|P54824 - symbol:ddx6 "ATP-dependent RNA helicas... 523 2.8e-50 1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 520 5.8e-50 1
TAIR|locus:2127043 - symbol:RH8 "RNAhelicase-like 8" spec... 519 7.4e-50 1
TAIR|locus:2020078 - symbol:EIF4A-2 "eif4a-2" species:370... 517 1.2e-49 1
GENEDB_PFALCIPARUM|PFD1070w - symbol:PFD1070w "eukaryotic... 516 1.5e-49 1
UNIPROTKB|Q8IFN9 - symbol:PFD1070w "Eukaryotic initiation... 516 1.5e-49 1
FB|FBgn0004419 - symbol:me31B "maternal expression at 31B... 513 3.2e-49 1
UNIPROTKB|Q5ZKB9 - symbol:DDX6 "Probable ATP-dependent RN... 513 3.2e-49 1
UNIPROTKB|E1BDM8 - symbol:DDX6 "Uncharacterized protein" ... 513 3.2e-49 1
UNIPROTKB|E2RR01 - symbol:DDX6 "Uncharacterized protein" ... 513 3.2e-49 1
UNIPROTKB|P26196 - symbol:DDX6 "Probable ATP-dependent RN... 513 3.2e-49 1
WARNING: Descriptions of 806 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2101993 [details] [associations]
symbol:LOS4 "LOW EXPRESSION OF OSMOTICALLY RESPONSIVE
GENES 4" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IMP]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0009408 "response to heat"
evidence=IMP] [GO:0009737 "response to abscisic acid stimulus"
evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0010286 "heat acclimation" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0009737 GO:GO:0005737 GO:GO:0005635 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 GO:GO:0009408 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 EMBL:AL132958 eggNOG:COG0513 HOGENOM:HOG000268797
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GO:GO:0016973 EMBL:AY057548 EMBL:BT002444 EMBL:BT008867
IPI:IPI00533725 PIR:T46157 RefSeq:NP_190879.1 UniGene:At.35224
UniGene:At.675 ProteinModelPortal:Q93ZG7 SMR:Q93ZG7 PaxDb:Q93ZG7
PRIDE:Q93ZG7 EnsemblPlants:AT3G53110.1 GeneID:824477
KEGG:ath:AT3G53110 GeneFarm:1014 TAIR:At3g53110 InParanoid:Q93ZG7
OMA:ESATTFE PhylomeDB:Q93ZG7 ProtClustDB:CLSN2684906
Genevestigator:Q93ZG7 GermOnline:AT3G53110 Uniprot:Q93ZG7
Length = 496
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 313/494 (63%), Positives = 383/494 (77%)
Query: 13 TLEPLPSTEPKRSWGDVAXXXXXXXXXXXXXXXXXXTANTSEDKSTAELDVEGLTIDESK 72
T+E +P+ S V +D+ A ++ L+I E +
Sbjct: 4 TVEKVPTVVESSSSSTVEASNSAEKTEPTTEKKKWGDVEDDDDEEEAVSELNSLSIKEEE 63
Query: 73 KVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISL 132
K + L+E EDS+IK VT+GDTPYTSA+ FEDLNLSPEL+KGLYVEMKF+KPSKIQAISL
Sbjct: 64 KPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISL 123
Query: 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192
PMI+TPP+++LIAQA NGSGKTTCFVLGMLSRVDP L+ PQALCICPTRELA QN+EVL+
Sbjct: 124 PMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQ 183
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKR-PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKIL 251
KMGK TGIT+E AVP DST P + R PV+A VVIGTPGT+KKWM+ K+LG + LKIL
Sbjct: 184 KMGKFTGITAELAVP-DSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKIL 242
Query: 252 VYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLF 311
V+DEADHML GFRDDSL+IMKDI R + + QVLLFSATFNETVK+FV R VKD NQLF
Sbjct: 243 VFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLF 302
Query: 312 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 371
VK+E+L+L+SVKQYKV CP E K+ VI+D+I ELG+ +GQTIIFV+TK SA +HKAL
Sbjct: 303 VKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGD-IGQTIIFVKTKASAQKVHKALA 361
Query: 372 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 431
+ GY+VT++ G + +RDKIVKEFK+ LTQVLI+TDV+ARGFDQQ+VNL+VNY+ P K+
Sbjct: 362 EMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKY 421
Query: 432 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD-GDDMIIMEKIERYFDIKVTEVR--NS 488
EPD EVYLHR+GRAGRFGRKG VFNLL+D G D +MEKIE+YF+ V E++ NS
Sbjct: 422 ETG-EPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVMEKIEKYFEANVKEIKSWNS 480
Query: 489 DEDFKAALKAAGLL 502
+E++K+ALK AGLL
Sbjct: 481 EEEYKSALKEAGLL 494
>SGD|S000005572 [details] [associations]
symbol:DBP5 "Cytoplasmic ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0044614 "nuclear pore cytoplasmic filaments" evidence=IDA]
[GO:0005934 "cellular bud tip" evidence=IDA] [GO:0005643 "nuclear
pore" evidence=IEA;IPI] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0031965 "nuclear membrane" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=IGI;IMP] [GO:0003724 "RNA helicase
activity" evidence=ISS;IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006415 "translational termination" evidence=IGI;IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000822 "inositol hexakisphosphate
binding" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000005572 GO:GO:0005524
GO:GO:0005737 EMBL:BK006948 GO:GO:0005934 GO:GO:0015031
GO:GO:0031965 GO:GO:0003723 GO:GO:0006406 GO:GO:0005844
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA OrthoDB:EOG4B2X5R
EMBL:U28135 EMBL:Z74954 EMBL:Z74955 PIR:S66920 RefSeq:NP_014689.1
PDB:2KBE PDB:2KBF PDB:3GFP PDB:3PEU PDB:3PEV PDB:3PEW PDB:3PEY
PDB:3RRM PDB:3RRN PDBsum:2KBE PDBsum:2KBF PDBsum:3GFP PDBsum:3PEU
PDBsum:3PEV PDBsum:3PEW PDBsum:3PEY PDBsum:3RRM PDBsum:3RRN
ProteinModelPortal:P20449 SMR:P20449 DIP:DIP-2352N IntAct:P20449
MINT:MINT-488024 STRING:P20449 PaxDb:P20449 PeptideAtlas:P20449
EnsemblFungi:YOR046C GeneID:854211 KEGG:sce:YOR046C CYGD:YOR046c
GeneTree:ENSGT00530000063236 EvolutionaryTrace:P20449
NextBio:976065 Genevestigator:P20449 GermOnline:YOR046C
GO:GO:0044614 GO:GO:0008186 GO:GO:0006415 Uniprot:P20449
Length = 482
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 182/439 (41%), Positives = 280/439 (63%)
Query: 54 EDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLK 113
E+K T + D ++ + KV K D D + +P SA +F++L L+PELLK
Sbjct: 55 EEKKTKQEDSNLISSEYEVKV-KLADIQADPN--------SPLYSAKSFDELGLAPELLK 105
Query: 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ 173
G+Y MKFQKPSKIQ +LP++L P RN+IAQ+++G+GKT F L ML+RV+P +PQ
Sbjct: 106 GIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQ 164
Query: 174 ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGT 233
A+C+ P+RELA Q LEV+++MGK T ITS+ VP DS K + AQV++GTPGT
Sbjct: 165 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVP-DS-----FEKNKQINAQVIVGTPGT 218
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293
+ M K + ++KI V DEAD+MLD+ G D +R+ + + + + Q++LFSATF
Sbjct: 219 VLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT---QLVLFSATFA 275
Query: 294 ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQT 353
+ V+ + +IV + N L ++ E++++++KQ + C +E K V+ + ++ L +G +
Sbjct: 276 DAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE-LYGL-MTIGSS 333
Query: 354 IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 413
IIFV TK +A+ L+ LK G+EV+ + G +ERD+++ +F++G ++VLI+T+VLARG
Sbjct: 334 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 393
Query: 414 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEK 473
D V+++VNYD P +P Y+HRIGR GRFGRKGV + + D + I+
Sbjct: 394 IDIPTVSMVVNYDLPTLANGQADP--ATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSA 451
Query: 474 IERYF-DIKVTEVRNSDED 491
I++YF DI++T V D D
Sbjct: 452 IQKYFGDIEMTRVPTDDWD 470
>CGD|CAL0000067 [details] [associations]
symbol:DBP5 species:5476 "Candida albicans" [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0000822 "inositol
hexakisphosphate binding" evidence=IEA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0044614 "nuclear
pore cytoplasmic filaments" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000067 GO:GO:0005524 GO:GO:0005737
GO:GO:0015031 GO:GO:0031965 GO:GO:0005643 GO:GO:0003723
EMBL:AACQ01000014 EMBL:AACQ01000013 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_721619.1 RefSeq:XP_721738.1 ProteinModelPortal:Q5AJD0
PRIDE:Q5AJD0 GeneID:3636564 GeneID:3636693 KEGG:cal:CaO19.1661
KEGG:cal:CaO19.9230 Uniprot:Q5AJD0
Length = 540
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 176/399 (44%), Positives = 257/399 (64%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L LSPELLKGLY MKF KPSKIQ +LP++L+ P RN+I Q+++G+G
Sbjct: 143 NSPLYSVKSFEELGLSPELLKGLYA-MKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 201
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN 212
KT F L MLSRVDP +K PQ LC+ PTRELA Q LEV+ MGK T IT++ VP N
Sbjct: 202 KTAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTNITTQLVVP----N 257
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRI 272
+P + V AQV++GTPG + ++L S++K+ V DEAD+ML+ G D ++R+
Sbjct: 258 AIP--RGSSVNAQVLVGTPGIAIDLIRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAIRV 315
Query: 273 MKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 332
K + R Q++LFSATF V+ + R+V D N L +K+EEL+++ +KQ + C E
Sbjct: 316 KKALPRG---VQLVLFSATFPTEVREYAERLVPDANSLELKQEELNVDGIKQLYMDCRSE 372
Query: 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 392
K V+ + ++ L +G +IIFV K +A L+ +K G+ V+ + G +RD++
Sbjct: 373 QHKFEVLCE-LYGL-LTIGSSIIFVEKKETADVLYGKMKKEGHTVSVLHGGLDNTDRDRL 430
Query: 393 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV-KHGKHLEPDCEVYLHRIGRAGR 451
+ +F++G ++VLI+T+VLARG D V+++VNYD P K+GK PD YLHRIGR GR
Sbjct: 431 IDDFREGRSKVLITTNVLARGIDIASVSMVVNYDMPTDKYGK---PDPSTYLHRIGRTGR 487
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYF-DIKVTEVRNSD 489
FGR GV + + D I+ I+ YF ++++T V D
Sbjct: 488 FGRVGVSISFIHDRRSYDILMAIKAYFGNVEMTRVPTDD 526
>MGI|MGI:1353582 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 25"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006810 "transport" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IDA]
[GO:0051028 "mRNA transport" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1353582 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 HOVERGEN:HBG107989 CTD:29118
OrthoDB:EOG4NS3BD OMA:WHFAERI ChiTaRS:DDX25 EMBL:AF142630
EMBL:AY380091 EMBL:AY380080 EMBL:AY380081 EMBL:AY380082
EMBL:AY380083 EMBL:AY380084 EMBL:AY380085 EMBL:AY380086
EMBL:AY380087 EMBL:AY380088 EMBL:AY380089 EMBL:AY380090
EMBL:AK050693 EMBL:AK078340 EMBL:BC024852 EMBL:BC061130
IPI:IPI00135420 IPI:IPI00759935 RefSeq:NP_038960.2
UniGene:Mm.291723 ProteinModelPortal:Q9QY15 SMR:Q9QY15
STRING:Q9QY15 PhosphoSite:Q9QY15 PaxDb:Q9QY15 PRIDE:Q9QY15
Ensembl:ENSMUST00000034612 GeneID:30959 KEGG:mmu:30959
UCSC:uc012gqi.1 InParanoid:Q9QY15 NextBio:307448 Bgee:Q9QY15
CleanEx:MM_DDX25 Genevestigator:Q9QY15
GermOnline:ENSMUSG00000032101 Uniprot:Q9QY15
Length = 484
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 183/446 (41%), Positives = 271/446 (60%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
NT ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 48 NT-EDDDDDEDDVVDLAANSL--LNKLIRQSLIESSHRVEVLQKDPSSPLYSVKTFEELR 104
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 105 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVN 163
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQV 226
PQ LC+ PT ELA+Q V+ +MGK + E N +P + VT Q+
Sbjct: 164 ALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRG-NRIP--RGTEVTKQI 219
Query: 227 VIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQV 285
+IGTPGT+ W +KL +++++ V DEAD M+D GF D S+RI + + CQ+
Sbjct: 220 IIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP---SECQM 276
Query: 286 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 345
LLFSATF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+
Sbjct: 277 LLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKGKYQALCN-IYG 335
Query: 346 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405
G +GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG +VLI
Sbjct: 336 -GITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLI 394
Query: 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465
+T+V ARG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ +
Sbjct: 395 TTNVCARGIDVKQVTIVVNFDLPVNQSE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EV 451
Query: 466 DDMIIMEKIERYFDIKVTEVRNSDED 491
D + ++ KI+ +F+ + ++ D D
Sbjct: 452 DKLPLLMKIQDHFNSNIKQLDPEDMD 477
>POMBASE|SPBC12C2.06 [details] [associations]
symbol:SPBC12C2.06 "cytoplasmic ATP-dependent RNA
helicase Dbp5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0002184 "cytoplasmic translational termination" evidence=NAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IC] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005643 "nuclear pore" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006415 "translational
termination" evidence=ISO] [GO:0015031 "protein transport"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC12C2.06 GO:GO:0005829 GO:GO:0005524
GO:GO:0005635 GO:GO:0015031 EMBL:CU329671 GO:GO:0031965
GO:GO:0005643 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0006406
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA OrthoDB:EOG4B2X5R
PIR:T39375 RefSeq:NP_596016.1 PDB:3FHO PDBsum:3FHO
ProteinModelPortal:Q09747 STRING:Q09747 PRIDE:Q09747
EnsemblFungi:SPBC12C2.06.1 GeneID:2539975 KEGG:spo:SPBC12C2.06
EvolutionaryTrace:Q09747 NextBio:20801118 GO:GO:0002184
Uniprot:Q09747
Length = 503
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 179/454 (39%), Positives = 272/454 (59%)
Query: 50 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTV---TTGDTPYTSATTFEDLN 106
A + +DK+T + + T + + + +K ++P S +FE+L
Sbjct: 61 AKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELE 120
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L PELLKG+Y MKFQKPSKIQ +LP++L+ P RN+I Q+++G+GKT F L MLSRVD
Sbjct: 121 LKPELLKGIY-SMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD 179
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQV 226
++ PQA+C+ P+RELA Q ++V+ +MGK+T + + + DS VP K + AQ+
Sbjct: 180 ASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIK-DS---VP--KGAKIDAQI 233
Query: 227 VIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVL 286
VIGTPGT+ M ++L +K+ V DEAD+MLD+ G D S+RI + R++ Q++
Sbjct: 234 VIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT---QIV 290
Query: 287 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL 346
LFSATF+E V+ + R + N++ +K EELS+E +KQ + C E K V+ + ++ L
Sbjct: 291 LFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVE-LYGL 349
Query: 347 GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 406
+GQ+IIF + K++A + + + G+ V + G +RD I+ F+ G ++VL++
Sbjct: 350 -LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVT 408
Query: 407 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
T+V+ARG D QVNL+VNYD P+ PD + YLHRIGR GRFGR GV N + D
Sbjct: 409 TNVIARGIDVSQVNLVVNYDMPLDQAGR--PDPQTYLHRIGRTGRFGRVGVSINFVHDKK 466
Query: 467 DMIIMEKIERYFDIKVTEVRNSD-EDFKAALKAA 499
M I+ YF +T V D E+ + +K A
Sbjct: 467 SWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNA 500
>RGD|68381 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box helicase 25"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO;ISS] [GO:0006417 "regulation of translation"
evidence=IEA;ISO;ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0033391 "chromatoid body" evidence=IEA;ISO;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:68381
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF142629 IPI:IPI00213497 IPI:IPI00760145 IPI:IPI00760150
RefSeq:NP_113818.2 UniGene:Rn.224821 ProteinModelPortal:Q9QY16
SMR:Q9QY16 STRING:Q9QY16 PRIDE:Q9QY16 GeneID:58856 KEGG:rno:58856
UCSC:RGD:68381 InParanoid:Q9QY16 NextBio:611449 ArrayExpress:Q9QY16
Genevestigator:Q9QY16 GermOnline:ENSRNOG00000012260 Uniprot:Q9QY16
Length = 483
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 183/446 (41%), Positives = 271/446 (60%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
NT ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 48 NTEEDDD--EDDVVDLAANSL--LNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELR 103
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL ML+RV+
Sbjct: 104 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVN 162
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQV 226
PQ LC+ PT ELA+Q V+ +MGK + E N +P + VT Q+
Sbjct: 163 ALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRG-NRIP--RGTDVTKQI 218
Query: 227 VIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQV 285
VIGTPGT+ W +KL +++++ V DEAD M+D GF D S+RI + + CQ+
Sbjct: 219 VIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP---SECQM 275
Query: 286 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 345
LLFSATF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+
Sbjct: 276 LLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKDKYQALCN-IYG 334
Query: 346 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405
G +GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG +VLI
Sbjct: 335 -GITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLI 393
Query: 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465
+T+V ARG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ +
Sbjct: 394 TTNVCARGIDVKQVTIVVNFDLPVNQSE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EV 450
Query: 466 DDMIIMEKIERYFDIKVTEVRNSDED 491
D + ++ KI+ +F+ + ++ D D
Sbjct: 451 DKLPLLMKIQDHFNSSIKQLDPEDMD 476
>UNIPROTKB|F1PIZ6 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:AAEX03003382 Ensembl:ENSCAFT00000016722 Uniprot:F1PIZ6
Length = 462
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 175/443 (39%), Positives = 269/443 (60%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPE 110
NT ED +D+ ++ +K + + L E+ +P S TFE+L L E
Sbjct: 28 NTEEDDEDDVVDLAANSL-LNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEE 86
Query: 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK 170
LLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 87 LLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNTLEL 145
Query: 171 APQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIG 229
PQ LC+ PT ELA+Q V+ +MGK + A+ N++P + VT Q++IG
Sbjct: 146 FPQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAI---RGNHIP--RGTDVTKQIIIG 200
Query: 230 TPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLF 288
TPGT+ W +KL +++++ V DEAD M+D GF D S+RI + + CQ+LLF
Sbjct: 201 TPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP---SECQMLLF 257
Query: 289 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 348
SATF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G
Sbjct: 258 SATFEDSVWQFAERIIPDPNVIKLRKEELTLSNIRQYYVLCENRKDKYQALCN-IYG-GI 315
Query: 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 408
+GQ IIF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+
Sbjct: 316 TIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTN 375
Query: 409 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 468
V RG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D +
Sbjct: 376 VSRRGIDVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKL 432
Query: 469 IIMEKIERYFDIKVTEVRNSDED 491
++ KI+ +F+ + ++ D D
Sbjct: 433 PLLMKIQDHFNSSIKQLDPEDMD 455
>UNIPROTKB|F1RVF0 [details] [associations]
symbol:LOC100512980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:ESATTFE
Ensembl:ENSSSCT00000012145 Uniprot:F1RVF0
Length = 462
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 182/447 (40%), Positives = 274/447 (61%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
NT ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 28 NTEEDD---EEDVVDLAANSL--LNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELR 82
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 83 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVN 141
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQ 225
PQ LC+ PT ELA+Q V+ +MG+ + A+ N +P + +T Q
Sbjct: 142 ALELFPQCLCLAPTYELALQTGRVVERMGRFCVDVQVMYAI---RGNRIP--RGTDITKQ 196
Query: 226 VVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284
++IGTPGT+ W +KL +++++ V DEAD M+D GF D S+RI + + SG CQ
Sbjct: 197 IIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP--SG-CQ 253
Query: 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 344
+LLFSATF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+
Sbjct: 254 MLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCN-IY 312
Query: 345 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 404
G +GQ IIF +T+ +A L + G++V+ + G ++R I++ F+DG +VL
Sbjct: 313 G-GITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLRGELTVDQRAAIIQRFRDGKEKVL 371
Query: 405 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 464
I+T+V ARG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ +
Sbjct: 372 ITTNVCARGIDVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-E 428
Query: 465 GDDMIIMEKIERYFDIKVTEVRNSDED 491
D + ++ KI+ +F+ + ++ D D
Sbjct: 429 VDKLPLLMKIQDHFNSNIKQLDPEDMD 455
>UNIPROTKB|Q9UHL0 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006406 "mRNA export from
nucleus" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0033391 "chromatoid body" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 EMBL:CH471065
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF155140 EMBL:AY735312 EMBL:AY735301 EMBL:AY735302
EMBL:AY735303 EMBL:AY735304 EMBL:AY735305 EMBL:AY735306
EMBL:AY735307 EMBL:AY735308 EMBL:AY735309 EMBL:AY735310
EMBL:AY735311 EMBL:AK312772 EMBL:BC035388 EMBL:BC050360
IPI:IPI00296139 IPI:IPI00759454 RefSeq:NP_037396.3
UniGene:Hs.420263 PDB:2RB4 PDBsum:2RB4 ProteinModelPortal:Q9UHL0
SMR:Q9UHL0 STRING:Q9UHL0 PhosphoSite:Q9UHL0 DMDM:61222937
PaxDb:Q9UHL0 PRIDE:Q9UHL0 Ensembl:ENST00000263576 GeneID:29118
KEGG:hsa:29118 UCSC:uc001qcz.4 GeneCards:GC11P125773
HGNC:HGNC:18698 HPA:HPA020090 HPA:HPA020137 MIM:607663
neXtProt:NX_Q9UHL0 PharmGKB:PA38644 InParanoid:Q9UHL0 OMA:WHFAERI
PhylomeDB:Q9UHL0 ChiTaRS:DDX25 EvolutionaryTrace:Q9UHL0
GenomeRNAi:29118 NextBio:52207 ArrayExpress:Q9UHL0 Bgee:Q9UHL0
CleanEx:HS_DDX25 Genevestigator:Q9UHL0 GermOnline:ENSG00000109832
Uniprot:Q9UHL0
Length = 483
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 180/447 (40%), Positives = 271/447 (60%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
N +ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 49 NINEDD---EEDVVDLAANSL--LNKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELR 103
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 104 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVN 162
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQ 225
PQ LC+ PT ELA+Q V+ +MGK + A+ N +P + +T Q
Sbjct: 163 ALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAI---RGNRIP--RGTDITKQ 217
Query: 226 VVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284
++IGTPGT+ W K + +++++ V DEAD M+D GF D S+RI + + CQ
Sbjct: 218 IIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP---SECQ 274
Query: 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 344
+LLFSATF ++V +F RI+ D N + ++KEEL+L +++QY V C K + +
Sbjct: 275 MLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYG 334
Query: 345 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 404
+ +GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG +VL
Sbjct: 335 SI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVL 392
Query: 405 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 464
I+T+V ARG D +QV ++VN+D PVK G+ EPD E YLHRIGR GRFG+KG+ FN++ +
Sbjct: 393 ITTNVCARGIDVKQVTIVVNFDLPVKQGE--EPDYETYLHRIGRTGRFGKKGLAFNMI-E 449
Query: 465 GDDMIIMEKIERYFDIKVTEVRNSDED 491
D++ + KI+ +F+ + ++ D D
Sbjct: 450 VDELPSLMKIQDHFNSSIKQLNAEDMD 476
>UNIPROTKB|Q2TBP1 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0033391
"chromatoid body" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0007286 "spermatid
development" evidence=ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q9UHL0
HOVERGEN:HBG107989 EMBL:BC109867 IPI:IPI00724449
RefSeq:NP_001033606.1 UniGene:Bt.14611 ProteinModelPortal:Q2TBP1
SMR:Q2TBP1 PRIDE:Q2TBP1 GeneID:508962 KEGG:bta:508962 CTD:29118
InParanoid:Q2TBP1 OrthoDB:EOG4NS3BD NextBio:20868762 Uniprot:Q2TBP1
Length = 483
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 179/440 (40%), Positives = 269/440 (61%)
Query: 60 ELDVEGLTID--ESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLNLSPELLK 113
E D E +D + +NK + ++ E S V D +P S TFE+L L ELLK
Sbjct: 51 EEDDEDDVVDLAANSLLNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLK 110
Query: 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ 173
G+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+ PQ
Sbjct: 111 GIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ 169
Query: 174 ALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 232
LC+ PT ELA+Q V+ +MGK + A+ N +P + VT Q+VIGTPG
Sbjct: 170 CLCLAPTYELALQTGRVVERMGKFCVDVQVMYAI---RGNRIP--RGTDVTKQIVIGTPG 224
Query: 233 TIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291
T+ W +KL +++++ V DEAD M+D GF D S+RI + + CQ+LLFSAT
Sbjct: 225 TVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFEDQSIRIQRALP---SECQMLLFSAT 281
Query: 292 FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 351
F ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G +G
Sbjct: 282 FEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCN-IYG-GITIG 339
Query: 352 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411
Q IIF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+V A
Sbjct: 340 QAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCA 399
Query: 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 471
RG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D + ++
Sbjct: 400 RGIDVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLL 456
Query: 472 EKIERYFDIKVTEVRNSDED 491
KI+ +F+ + ++ D D
Sbjct: 457 MKIQDHFNSSIKQLDPEDMD 476
>UNIPROTKB|F1MSI6 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003676 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
IPI:IPI00724449 OMA:WHFAERI EMBL:DAAA02063102
Ensembl:ENSBTAT00000005587 Uniprot:F1MSI6
Length = 483
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 179/440 (40%), Positives = 268/440 (60%)
Query: 60 ELDVEGLTID--ESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLNLSPELLK 113
E D E +D + +NK + ++ E S V D +P S TFE+L L ELLK
Sbjct: 51 EEDDEDDVVDLAANSLLNKLIRQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLK 110
Query: 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ 173
G+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+ PQ
Sbjct: 111 GIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ 169
Query: 174 ALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 232
LC+ PT ELA+Q V+ +MGK + A+ N +P + VT Q+VIGTPG
Sbjct: 170 CLCLAPTYELALQTGRVVERMGKFCVDVQVMYAI---RGNRIP--RGTDVTKQIVIGTPG 224
Query: 233 TIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291
T+ W +KL +++++ V DEAD M+D GF D S+RI + + CQ+LLFSAT
Sbjct: 225 TVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFADQSIRIQRALP---SECQMLLFSAT 281
Query: 292 FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 351
F ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G +G
Sbjct: 282 FEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCN-IYG-GITIG 339
Query: 352 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411
Q IIF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+V A
Sbjct: 340 QAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCA 399
Query: 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 471
RG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D + ++
Sbjct: 400 RGIDVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLL 456
Query: 472 EKIERYFDIKVTEVRNSDED 491
KI+ +F + ++ D D
Sbjct: 457 MKIQDHFSENIKQLDPEDMD 476
>UNIPROTKB|J3QL17 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP000842 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:18698
ChiTaRS:DDX25 Ensembl:ENST00000530414 Uniprot:J3QL17
Length = 468
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 178/434 (41%), Positives = 265/434 (61%)
Query: 51 NTSEDKSTAELDVEGLTIDESKKVNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLN 106
N +ED E DV L + +NK + ++ E S V D +P S TFE+L
Sbjct: 52 NINEDD---EEDVVDLAANSL--LNKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELR 106
Query: 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166
L ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 107 LKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVN 165
Query: 167 PNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQ 225
PQ LC+ PT ELA+Q V+ +MGK + A+ N +P + +T Q
Sbjct: 166 ALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAI---RGNRIP--RGTDITKQ 220
Query: 226 VVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284
++IGTPGT+ W K + +++++ V DEAD M+D GF D S+RI + + CQ
Sbjct: 221 IIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP---SECQ 277
Query: 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 344
+LLFSATF ++V +F RI+ D N + ++KEEL+L +++QY V C K + +
Sbjct: 278 MLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNIYG 337
Query: 345 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 404
+ +GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG +VL
Sbjct: 338 SI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVL 395
Query: 405 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 464
I+T+V ARG D +QV ++VN+D PVK G+ EPD E YLHRIGR GRFG+KG+ FN++ +
Sbjct: 396 ITTNVCARGIDVKQVTIVVNFDLPVKQGE--EPDYETYLHRIGRTGRFGKKGLAFNMI-E 452
Query: 465 GDDMIIMEKIERYF 478
D++ + KI+ +F
Sbjct: 453 VDELPSLMKIQDHF 466
>MGI|MGI:99526 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006917 "induction of apoptosis"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:99526
GO:GO:0005524 GO:GO:0005737 GO:GO:0015031 GO:GO:0031965
GO:GO:0005643 GO:GO:0003723 EMBL:CH466525 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:L25125 EMBL:AK049467
EMBL:AK146548 EMBL:BC011270 IPI:IPI00123651 PIR:I49731
RefSeq:NP_031942.2 UniGene:Mm.287901 ProteinModelPortal:Q61655
SMR:Q61655 IntAct:Q61655 PhosphoSite:Q61655
REPRODUCTION-2DPAGE:Q61655 PaxDb:Q61655 PRIDE:Q61655
Ensembl:ENSMUST00000040416 GeneID:13680 KEGG:mmu:13680
InParanoid:Q543M2 ChiTaRS:DDX19A NextBio:284434 Bgee:Q61655
CleanEx:MM_DDX19A Genevestigator:Q61655
GermOnline:ENSMUSG00000015023 Uniprot:Q61655
Length = 478
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 160/400 (40%), Positives = 250/400 (62%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GK
Sbjct: 85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGK 143
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTN 212
T FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 144 TAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-- 201
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLR 271
+ + V+ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+R
Sbjct: 202 ---LERGQKVSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 258
Query: 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331
I + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 259 IQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNN 315
Query: 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 316 REEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAA 373
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GR
Sbjct: 374 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGR 431
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
FG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 432 FGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|F1S758 [details] [associations]
symbol:LOC100523329 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:CU928873 Ensembl:ENSSSCT00000016589 Uniprot:F1S758
Length = 379
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 161/384 (41%), Positives = 246/384 (64%)
Query: 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL 169
ELLKG+Y M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+
Sbjct: 3 ELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALE 61
Query: 170 KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVI 228
PQ LC+ PT ELA+Q V+ +MG+ + A+ N +P + +T Q++I
Sbjct: 62 LFPQCLCLAPTYELALQTGRVVERMGRFCVDVQVMYAI---RGNRIP--RGTDITKQIII 116
Query: 229 GTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLL 287
GTPGT+ W +KL +++++ V DEAD M+D GF D S+RI + + SG CQ+LL
Sbjct: 117 GTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP--SG-CQMLL 173
Query: 288 FSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 347
FSATF ++V F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G
Sbjct: 174 FSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCN-IYG-G 231
Query: 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 407
+GQ IIF +T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T
Sbjct: 232 ITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRAAIIQRFRDGKEKVLITT 291
Query: 408 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467
+V ARG D +QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D
Sbjct: 292 NVCARGIDVKQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDK 348
Query: 468 MIIMEKIERYFDIKVTEVRNSDED 491
+ ++ KI+ +F+ + ++ D D
Sbjct: 349 LPLLMKIQDHFNSNIKQLDPEDMD 372
>UNIPROTKB|E9PR46 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP000842 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:18698
ChiTaRS:DDX25 IPI:IPI00984425 Ensembl:ENST00000526875
ArrayExpress:E9PR46 Bgee:E9PR46 Uniprot:E9PR46
Length = 407
Score = 488 (176.8 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 104/271 (38%), Positives = 166/271 (61%)
Query: 222 VTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
V QV+ G + W K + +++++ V DEAD M+D GF D S+RI + +
Sbjct: 139 VDVQVMYAIRGN-RNWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP--- 194
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
CQ+LLFSATF ++V +F RI+ D N + ++KEEL+L +++QY V C K +
Sbjct: 195 SECQMLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALC 254
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
+ + +GQ IIF +T+ +A L + G++V+ + G E+R I++ F+DG
Sbjct: 255 NIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 312
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
+VLI+T+V ARG D +QV ++VN+D PVK G+ EPD E YLHRIGR GRFG+KG+ FN
Sbjct: 313 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGE--EPDYETYLHRIGRTGRFGKKGLAFN 370
Query: 461 LLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
++ + D++ + KI+ +F+ + ++ D D
Sbjct: 371 MI-EVDELPSLMKIQDHFNSSIKQLNAEDMD 400
Score = 270 (100.1 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 62/127 (48%), Positives = 83/127 (65%)
Query: 74 VNKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQA 129
+NK + ++ E S V D +P S TFE+L L ELLKG+Y M F +PSKIQ
Sbjct: 11 LNKLIHQSLVESSHRVEVLQKDPSSPLYSVKTFEELRLKEELLKGIYA-MGFNRPSKIQE 69
Query: 130 ISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189
++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+ PQ LC+ PT ELA+Q
Sbjct: 70 MALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGR 129
Query: 190 VLRKMGK 196
V+ +MGK
Sbjct: 130 VVEQMGK 136
>UNIPROTKB|Q9NUU7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965
"nuclear membrane" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:AK001988 EMBL:AK223262
EMBL:AL832970 EMBL:CH471241 EMBL:BC005162 EMBL:BC006544
EMBL:BC137496 EMBL:BC137497 IPI:IPI00019918 RefSeq:NP_060802.1
UniGene:Hs.656037 ProteinModelPortal:Q9NUU7 SMR:Q9NUU7
IntAct:Q9NUU7 MINT:MINT-1450935 STRING:Q9NUU7 PhosphoSite:Q9NUU7
DMDM:73919226 PaxDb:Q9NUU7 PeptideAtlas:Q9NUU7 PRIDE:Q9NUU7
DNASU:55308 Ensembl:ENST00000302243 GeneID:55308 KEGG:hsa:55308
UCSC:uc002eyv.3 GeneCards:GC16P070380 H-InvDB:HIX0038837
HGNC:HGNC:25628 HPA:HPA045252 neXtProt:NX_Q9NUU7
PharmGKB:PA134894996 InParanoid:Q9NUU7 PhylomeDB:Q9NUU7
GenomeRNAi:55308 NextBio:59538 ArrayExpress:Q9NUU7 Bgee:Q9NUU7
CleanEx:HS_DDX19A Genevestigator:Q9NUU7 GermOnline:ENSG00000168872
Uniprot:Q9NUU7
Length = 478
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 158/401 (39%), Positives = 251/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P+ + PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 143 KTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 202 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 258 RIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 314
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 315 SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 372
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 373 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 430
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 431 RFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|I3LC00 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236
EMBL:CU929739 RefSeq:XP_003126917.1 Ensembl:ENSSSCT00000029799
GeneID:100524144 KEGG:ssc:100524144 Uniprot:I3LC00
Length = 478
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 158/401 (39%), Positives = 250/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 143 KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 202 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 258 RIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCN 314
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
+ K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 315 NRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRA 372
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 373 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 430
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 431 RFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>RGD|1303136 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524 GO:GO:0006917
GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 160/400 (40%), Positives = 249/400 (62%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GK
Sbjct: 85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGK 143
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTN 212
T FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 144 TAAFVLAMLSRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-- 201
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLR 271
+ + V Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+R
Sbjct: 202 ---LERGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 258
Query: 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331
I + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 259 IQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNN 315
Query: 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 316 REEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAA 373
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GR
Sbjct: 374 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGR 431
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
FG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 432 FGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>RGD|1593382 [details] [associations]
symbol:Ddx19b "DEAD (Asp-Glu-Ala-As) box polypeptide 19B"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524
GO:GO:0006917 GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 160/400 (40%), Positives = 249/400 (62%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GK
Sbjct: 85 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGK 143
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTN 212
T FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 144 TAAFVLAMLSRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-- 201
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLR 271
+ + V Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+R
Sbjct: 202 ---LERGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 258
Query: 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331
I + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 259 IQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNN 315
Query: 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 316 REEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAA 373
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GR
Sbjct: 374 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGR 431
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
FG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 432 FGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|Q3ZBV2 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9913 "Bos taurus" [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 EMBL:BC103093 IPI:IPI00788586
RefSeq:NP_001029743.1 UniGene:Bt.49612 HSSP:Q9UHL0
ProteinModelPortal:Q3ZBV2 SMR:Q3ZBV2 PRIDE:Q3ZBV2
Ensembl:ENSBTAT00000004645 GeneID:529929 KEGG:bta:529929 CTD:55308
HOVERGEN:HBG107989 InParanoid:Q3ZBV2 OMA:MMAINTI OrthoDB:EOG46MBJK
NextBio:20875139 ArrayExpress:Q3ZBV2 Uniprot:Q3ZBV2
Length = 478
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 159/401 (39%), Positives = 250/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 143 KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 202 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 258 RIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCN 314
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
K + + I+ + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 315 SRDEKFQALCN-IYG-AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRA 372
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 373 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 430
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 431 RFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|Q5ZMC1 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K01529 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA
GeneTree:ENSGT00530000063236 HOVERGEN:HBG107989 CTD:11269
EMBL:AADN02040672 UniGene:Gga.7753 EMBL:AJ719463 IPI:IPI00571485
RefSeq:NP_001006568.1 SMR:Q5ZMC1 Ensembl:ENSGALT00000039619
GeneID:426504 KEGG:gga:426504 InParanoid:Q5ZMC1 NextBio:20828056
Uniprot:Q5ZMC1
Length = 479
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 158/401 (39%), Positives = 250/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L+L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 85 NSPLYSVKSFEELHLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 143
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P K PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 144 KTAAFVLAMLSRVEPGNKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 202
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 203 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 259 RIQRMLPRD---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCN 315
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
K + + I+ + Q ++F T+ +A L L G++V + G + E+R
Sbjct: 316 SRDEKFRALCN-IYG-AITIAQAMVFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRA 373
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 374 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 431
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F K+ ++ D D
Sbjct: 432 RFGKRGLAINMVDSKHSMNILNRIQEHFSKKINKLDTDDLD 472
>UNIPROTKB|E9PTL9 [details] [associations]
symbol:Ddx19b "Protein Ddx19b" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1593382 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00959699
Ensembl:ENSRNOT00000059034 ArrayExpress:E9PTL9 Uniprot:E9PTL9
Length = 482
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 159/400 (39%), Positives = 249/400 (62%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+GK
Sbjct: 89 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGK 147
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTN 212
T FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 148 TAAFVLAMLSRVEPADRHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-- 205
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLR 271
+ + V Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+R
Sbjct: 206 ---LERGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 262
Query: 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331
I + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C +
Sbjct: 263 IQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNN 319
Query: 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 320 REEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAA 377
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR GR
Sbjct: 378 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGR 435
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
FG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 436 FGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 475
>UNIPROTKB|E2RR50 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
EMBL:AAEX03004077 RefSeq:XP_536790.2 ProteinModelPortal:E2RR50
Ensembl:ENSCAFT00000032061 GeneID:479658 KEGG:cfa:479658
NextBio:20854805 Uniprot:E2RR50
Length = 478
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 157/401 (39%), Positives = 250/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 143 KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 202 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + ++ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 258 RIQRMLPKN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCN 314
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
+ K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 315 NRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 372
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 373 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 430
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 431 RFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471
>UNIPROTKB|H3BQK0 [details] [associations]
symbol:DDX19B "HCG1998531, isoform CRA_g" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:CH471241 EMBL:AC012184 HGNC:HGNC:2742
ChiTaRS:DDX19B SMR:H3BQK0 Ensembl:ENST00000563206 Uniprot:H3BQK0
Length = 484
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 157/401 (39%), Positives = 250/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 90 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 148
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P K PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 149 KTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 207
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 208 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 263
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 264 RIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 320
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 321 SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 378
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 379 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 436
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 437 RFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 477
>UNIPROTKB|Q9UMR2 [details] [associations]
symbol:DDX19B "ATP-dependent RNA helicase DDX19B"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0004386
GO:GO:0006406 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
OrthoDB:EOG46MBJK EMBL:CH471241 EMBL:AJ237946 EMBL:AF353720
EMBL:AL136639 EMBL:CR457215 EMBL:CR533509 EMBL:AK027378
EMBL:AK301938 EMBL:AK302107 EMBL:AK316346 EMBL:AC012184
EMBL:BC003626 EMBL:BC010008 IPI:IPI00008943 IPI:IPI00027599
IPI:IPI00556368 IPI:IPI00939593 RefSeq:NP_001014449.1
RefSeq:NP_001014451.1 RefSeq:NP_001244101.1 RefSeq:NP_001244102.1
RefSeq:NP_001244103.1 RefSeq:NP_009173.1 UniGene:Hs.221761 PDB:3EWS
PDB:3FHC PDB:3FHT PDB:3FMO PDB:3FMP PDB:3G0H PDBsum:3EWS
PDBsum:3FHC PDBsum:3FHT PDBsum:3FMO PDBsum:3FMP PDBsum:3G0H
ProteinModelPortal:Q9UMR2 SMR:Q9UMR2 DIP:DIP-48486N IntAct:Q9UMR2
MINT:MINT-1387516 STRING:Q9UMR2 PhosphoSite:Q9UMR2 DMDM:10719979
PaxDb:Q9UMR2 PRIDE:Q9UMR2 DNASU:11269 Ensembl:ENST00000288071
Ensembl:ENST00000355992 Ensembl:ENST00000393657
Ensembl:ENST00000451014 Ensembl:ENST00000563392
Ensembl:ENST00000568625 GeneID:11269 KEGG:hsa:11269 UCSC:uc002eyo.3
UCSC:uc002eyp.3 CTD:11269 GeneCards:GC16P070328 HGNC:HGNC:2742
HPA:CAB037284 MIM:605812 neXtProt:NX_Q9UMR2 PharmGKB:PA27208
InParanoid:Q9UMR2 OMA:HETIFEV PhylomeDB:Q9UMR2 ChiTaRS:DDX19B
EvolutionaryTrace:Q9UMR2 GenomeRNAi:11269 NextBio:42879
ArrayExpress:Q9UMR2 Bgee:Q9UMR2 CleanEx:HS_DDX19B
Genevestigator:Q9UMR2 GermOnline:ENSG00000157349 Uniprot:Q9UMR2
Length = 479
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 157/401 (39%), Positives = 250/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 143
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P K PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 144 KTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 202
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 203 ----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 259 RIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 315
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 316 SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 373
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 374 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 431
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 432 RFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472
>ZFIN|ZDB-GENE-020419-30 [details] [associations]
symbol:ddx19 "DEAD/H (Asp-Glu-Ala-Asp/His) box
polypeptide 19 (DBP5 homolog, yeast)" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-020419-30 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
HSSP:P10081 EMBL:AY099536 IPI:IPI00481107 RefSeq:NP_775365.1
UniGene:Dr.116877 ProteinModelPortal:Q8JGR1 SMR:Q8JGR1
STRING:Q8JGR1 GeneID:192339 KEGG:dre:192339 CTD:192339
InParanoid:Q8JGR1 NextBio:20797174 ArrayExpress:Q8JGR1
Uniprot:Q8JGR1
Length = 487
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 162/402 (40%), Positives = 247/402 (61%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++ +GK
Sbjct: 94 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQETALPMMLAEPPQNLIAQSQSRTGK 152
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTN 212
T FVL MLS VD K P+ LC+CPT ELA+Q +V+ +MGKH + A+ +
Sbjct: 153 TAAFVLAMLSHVDTENKWPECLCVCPTYELALQTGKVIEQMGKHYPEVQLVYAIRGNK-- 210
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF---SRLKILVYDEADHMLDEAGFRDDS 269
+ + + Q+VIGTPGT+ W +KL F ++K+ V DEAD M+ G +D S
Sbjct: 211 ---LERGAKLQEQIVIGTPGTVLDW--CQKLKFIDPKKIKVFVLDEADVMIATQGHQDQS 265
Query: 270 LRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 329
+RI + + ++ CQ+LLFSATF ETV NF RIV D N + +K+EE +L+++KQY V C
Sbjct: 266 VRIQRMLPKT---CQMLLFSATFEETVWNFAKRIVPDPNIIKLKREEETLDTIKQYYVIC 322
Query: 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 389
+ K + + I+ + Q +IF T+ +A L L G++V + G E+R
Sbjct: 323 NSKEEKFQALCN-IYG-AITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQR 380
Query: 390 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 449
+++ F+DG +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR
Sbjct: 381 AAVIERFRDGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRT 438
Query: 450 GRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
GRFG++G+ N+ M + +I+ +F+ K+ ++ D D
Sbjct: 439 GRFGKRGLAINMADSKFSMNTLNRIQDHFNKKIEKLDTDDLD 480
>ZFIN|ZDB-GENE-080721-12 [details] [associations]
symbol:zgc:193690 "zgc:193690" species:7955 "Danio
rerio" [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-080721-12 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
EMBL:CR846089 IPI:IPI00928637 ProteinModelPortal:F1Q5T4
Ensembl:ENSDART00000134461 ArrayExpress:F1Q5T4 Bgee:F1Q5T4
Uniprot:F1Q5T4
Length = 492
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 161/392 (41%), Positives = 244/392 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S TFE+L L P+LLKG+Y EM F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 77 NSPLYSVKTFEELRLKPQLLKGVY-EMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 135
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS VDP K Q LCI PT ELA+Q +V+ +MGK + +T AV
Sbjct: 136 KTAAFVLAMLSHVDPACKWSQCLCISPTYELALQTGKVIEQMGKFYPEVTLAYAVRGHR- 194
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + + Q+VIGTPGT+ W + K + ++K+ V DEAD M+ G +D S+
Sbjct: 195 ----MERGVRIKDQIVIGTPGTVLDWCIKLKLIDPKKIKVFVLDEADVMIATQGHQDQSI 250
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + + CQ+LLFSATF ++V F R+V D N + +K+EE +L+++KQY V C
Sbjct: 251 RIQRMLPKG---CQMLLFSATFEDSVWKFAERVVPDPNIIKLKREEETLDTIKQYYVLCN 307
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
+ K + + I+ + Q +IF T+ A+ L + G++V + G + E+R
Sbjct: 308 SKEDKFNALCN-IYG-AITIAQAMIFCHTRKMANWLAGQMSKEGHQVALLSGEMVVEQRA 365
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F+DG +VLI+T+V ARG D +QV++++N+D P+ K PD E YLHRIGR G
Sbjct: 366 AVIERFRDGKEKVLITTNVCARGIDVEQVSVVINFDLPLD--KDSNPDNETYLHRIGRTG 423
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482
RFG++G+ N++ M I++ ER+F K+
Sbjct: 424 RFGKRGLAINMVDSQRSMEILKTYERHFGKKL 455
>UNIPROTKB|F1S432 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:HETIFEV
EMBL:CU929739 Ensembl:ENSSSCT00000003016 Uniprot:F1S432
Length = 481
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 155/401 (38%), Positives = 250/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 87 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 145
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P + PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 146 KTAAFVLAMLSQVEPANRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 204
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 205 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 260
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 261 RIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCN 317
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
+ K + + + + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 318 NRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRA 375
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 376 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 433
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 434 RFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 474
>DICTYBASE|DDB_G0281553 [details] [associations]
symbol:helC "DEAD-box RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281553 GO:GO:0007275
GO:GO:0005524 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
OMA:PQAICLA HSSP:Q9UHL0 EMBL:AF002677 RefSeq:XP_640633.1
ProteinModelPortal:Q54TF8 EnsemblProtists:DDB0215338 GeneID:8623244
KEGG:ddi:DDB_G0281553 Uniprot:Q54TF8
Length = 465
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 168/409 (41%), Positives = 254/409 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S TFE+L L PELLKG+Y M + KPSKIQ +LP+I+ P NLIAQ+++G+G
Sbjct: 63 NSPLYSVKTFEELGLKPELLKGVYA-MGYNKPSKIQEAALPIIIQSP-NNLIAQSQSGTG 120
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN 212
KT F LGML+ VDP++ APQA+CI PT+ELA+Q EV+ K+G+ + I P +
Sbjct: 121 KTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIK-----PLLYIS 175
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRI 272
+ + K VT QV+IGTPG I + + K+L LK++V DEAD ++ + I
Sbjct: 176 EIEVPKN--VTNQVIIGTPGKILENVIKKQLSVKFLKMVVLDEADFIVKMKNVPNQIAMI 233
Query: 273 MKDIERSSGHCQVLLFSATFNETVKNFVTRIVKD-YNQLFVKKEELSLESVKQYKVYCPD 331
+ + + +V LFSATF+ V+ + +IV+D Y + +K++ELS+E + QY + C
Sbjct: 234 NRLLP---SNVKVCLFSATFSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGS 290
Query: 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ-EERD 390
E K +++ D I+ +GQ+I+FV T +A ++H+ + D G+ V+ + G + EER
Sbjct: 291 EDNKALILSD-IYGF-ISVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERF 348
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH-GKHLEPDCEVYLHRIGRA 449
K +K+FKDG ++VLI+T+VLARG D QV+L++NYD P+ GK PD YLHRIGR
Sbjct: 349 KQIKDFKDGKSKVLITTNVLARGIDIPQVSLVINYDVPLDEMGK---PDPVHYLHRIGRV 405
Query: 450 GRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD-EDFKAALK 497
GRFGR GV + + D + I + + + E+++S+ E LK
Sbjct: 406 GRFGRSGVALSFVYDQQSTNKLMNISTHLGVPLKELKSSEIESLDGILK 454
>UNIPROTKB|F1MUT6 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 EMBL:DAAA02045970
IPI:IPI00704706 UniGene:Bt.37736 Ensembl:ENSBTAT00000004644
OMA:KMSMNIL Uniprot:F1MUT6
Length = 484
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 156/401 (38%), Positives = 250/401 (62%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LP++L P +NLIAQ+++G+G
Sbjct: 90 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTG 148
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLS+V+P + PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 149 KTAAFVLAMLSQVEPANRHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK- 207
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 208 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 263
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 264 RIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCN 320
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
K + + I+ + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 321 SRDEKFQALCN-IYG-AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRA 378
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR G
Sbjct: 379 AVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTG 436
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 437 RFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 477
>UNIPROTKB|J9NSS1 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063236 CTD:29118 EMBL:AAEX03003382
RefSeq:XP_536532.3 Ensembl:ENSCAFT00000048680 GeneID:479396
KEGG:cfa:479396 Uniprot:J9NSS1
Length = 369
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 155/375 (41%), Positives = 238/375 (63%)
Query: 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178
M F +PSKIQ ++LPM+L P +NLIAQ+++G+GKT FVL MLSRV+ PQ LC+
Sbjct: 1 MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNTLELFPQCLCLA 60
Query: 179 PTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW 237
PT ELA+Q V+ +MGK + A+ N++P + VT Q++IGTPGT+ W
Sbjct: 61 PTYELALQTGRVVERMGKFCVDVQVMYAI---RGNHIP--RGTDVTKQIIIGTPGTVLDW 115
Query: 238 MSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296
+KL +++++ V DEAD M+D GF D S+RI + + CQ+LLFSATF ++V
Sbjct: 116 CFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP---SECQMLLFSATFEDSV 172
Query: 297 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIF 356
F RI+ D N + ++KEEL+L +++QY V C + K + + I+ G +GQ IIF
Sbjct: 173 WQFAERIIPDPNVIKLRKEELTLSNIRQYYVLCENRKDKYQALCN-IYG-GITIGQAIIF 230
Query: 357 VRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416
+T+ +A L + G++V+ + G ++R I++ F+DG +VLI+T+V ARG D
Sbjct: 231 CQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDV 290
Query: 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 476
+QV ++VN+D PV + EPD E YLHRIGR GRFG+KG+ FN++ + D + ++ KI+
Sbjct: 291 KQVTIVVNFDLPVNQAE--EPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKIQD 347
Query: 477 YFDIKVTEVRNSDED 491
+F+ + ++ D D
Sbjct: 348 HFNSSIKQLDPEDMD 362
>UNIPROTKB|Q9DGP9 [details] [associations]
symbol:deadsouth "ATP-dependent RNA helicase DDX25"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=IDA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0045495 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032019 HSSP:Q9UHL0 HOVERGEN:HBG107989 CTD:29118
EMBL:AF190623 RefSeq:NP_001082017.1 UniGene:Xl.670
ProteinModelPortal:Q9DGP9 SMR:Q9DGP9 PRIDE:Q9DGP9 GeneID:398180
KEGG:xla:398180 Xenbase:XB-GENE-958142 Uniprot:Q9DGP9
Length = 483
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 160/400 (40%), Positives = 252/400 (63%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P S +FE+L+L ELL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GK
Sbjct: 91 SPLFSVKSFEELHLKNELLRGIYA-MGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGK 149
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTN 212
T FVL MLSRVD N K PQ +C+ PT ELA+Q +V+ +MGK GI A+ +
Sbjct: 150 TAAFVLAMLSRVDANKKYPQCICLSPTFELALQTGKVVEEMGKFCAGIEVIYALRGNR-- 207
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLR 271
P K + AQ+VIGTPGT+ W + + + + V DEAD M++ G D S+R
Sbjct: 208 --P-GKGSRLEAQIVIGTPGTVLDWCFKLRLITVENISVFVLDEADVMINVQGHSDHSVR 264
Query: 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331
+ + + +S CQ+LLFSATF ++V F RIV D N + +KKEEL+L++++Q+ C +
Sbjct: 265 VKRSMPKS---CQMLLFSATFEDSVWAFAERIVPDPNIIKLKKEELTLKNIQQFYDQCEN 321
Query: 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
+ K + + + + Q I+F +T+ AS L + L D G++V + G +R
Sbjct: 322 KEQKYSALCNLYGVI--TIAQAIVFCQTRKIASWLSQKLSDDGHQVALLSGELPVYDRAD 379
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+++ F++G +VL++T+V ARG D +QV+++VN+D PV + D E YLHRIGR GR
Sbjct: 380 MIQRFREGREKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSV--DFETYLHRIGRTGR 437
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
FG+KG+ +L+ + + ++++IE +F+ K+T++ + D D
Sbjct: 438 FGKKGIAVSLI-ENFFVYMLKEIEDHFNTKITKLNSMDMD 476
>UNIPROTKB|I3L352 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:25628 EMBL:AC012184
Ensembl:ENST00000575878 Uniprot:I3L352
Length = 396
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 158/403 (39%), Positives = 249/403 (61%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
TGD + + TF L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G
Sbjct: 4 TGD--FWMSGTF--LIRKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSG 58
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTD 209
+GKT FVL MLSRV+P+ + PQ LC+ PT ELA+Q +V+ +MGK + + AV +
Sbjct: 59 TGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 118
Query: 210 STNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDD 268
+ + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD M+ G +D
Sbjct: 119 K-----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 173
Query: 269 SLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY 328
S+RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V
Sbjct: 174 SIRIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL 230
Query: 329 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEE 388
C K + + + + Q +IF T+ +AS L L G++V + G + E+
Sbjct: 231 CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQ 288
Query: 389 RDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 448
R +++ F++G +VL++T+V ARG D +QV++++N+D PV K PD E YLHRIGR
Sbjct: 289 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGR 346
Query: 449 AGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
GRFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 347 TGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 389
>UNIPROTKB|B4DRZ7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
UniGene:Hs.656037 HGNC:HGNC:25628 EMBL:AC012184 EMBL:AK299504
IPI:IPI01009735 SMR:B4DRZ7 STRING:B4DRZ7 Ensembl:ENST00000443119
UCSC:uc002eys.3 Uniprot:B4DRZ7
Length = 388
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 152/385 (39%), Positives = 241/385 (62%)
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168
P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+GKT FVL MLSRV+P+
Sbjct: 10 PQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPS 68
Query: 169 LKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVV 227
+ PQ LC+ PT ELA+Q +V+ +MGK + + AV + + + ++ Q+V
Sbjct: 69 DRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-----LERGQKISEQIV 123
Query: 228 IGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVL 286
IGTPGT+ W S K + ++K+ V DEAD M+ G +D S+RI + + R+ CQ+L
Sbjct: 124 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN---CQML 180
Query: 287 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL 346
LFSATF ++V F ++V D N + +K+EE +L+++KQY V C K + + +
Sbjct: 181 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 240
Query: 347 GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 406
+ Q +IF T+ +AS L L G++V + G + E+R +++ F++G +VL++
Sbjct: 241 --TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 298
Query: 407 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
T+V ARG D +QV++++N+D PV K PD E YLHRIGR GRFG++G+ N++
Sbjct: 299 TNVCARGIDVEQVSVVINFDLPVD--KDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 356
Query: 467 DMIIMEKIERYFDIKVTEVRNSDED 491
M I+ +I+ +F+ K+ + D D
Sbjct: 357 SMNILNRIQEHFNKKIERLDTDDLD 381
>WB|WBGene00011580 [details] [associations]
symbol:ddx-19 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007281
"germ cell development" evidence=IGI] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0007281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00530000063236 HSSP:P10081 EMBL:Z50071
InterPro:IPR025574 Pfam:PF13634 UniGene:Cel.7700 GeneID:174418
KEGG:cel:CELE_T07D4.4 CTD:174418 UCSC:T07D4.4b.1 NextBio:883942
PIR:T24663 RefSeq:NP_495891.1 ProteinModelPortal:Q22308 SMR:Q22308
STRING:Q22308 PRIDE:Q22308 EnsemblMetazoa:T07D4.4a
WormBase:T07D4.4a HOGENOM:HOG000016712 InParanoid:Q22308
OMA:HEGGRFG ArrayExpress:Q22308 Uniprot:Q22308
Length = 1022
Score = 695 (249.7 bits), Expect = 3.9e-68, P = 3.9e-68
Identities = 169/434 (38%), Positives = 256/434 (58%)
Query: 74 VNKFLDEAEDSSIKTVTTG----D--TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKI 127
+NKF+ + E +K V D +P S ++F +L L PE+LK L M FQ P++I
Sbjct: 587 LNKFIQK-EVKMMKDVVVDVQRQDPKSPLYSISSFRELRLKPEVLKALDT-MNFQFPTRI 644
Query: 128 QAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187
Q +LP++L P NLIAQA++G+GKT FVL ML R+D NL PQ +C+ PT ELA Q
Sbjct: 645 QETALPLLLMEPPSNLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQI 704
Query: 188 LEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGF 245
EV+ KMGK + A+ N + R +T Q+VIGTPG + ++ K +
Sbjct: 705 GEVVEKMGKFIDNLKIHYAIK--GGNMAAMRGRK-LTEQIVIGTPGITRDYLQKYKCIDP 761
Query: 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK 305
S+++ LV DEAD M+ GF D S I +E +S Q +LFSAT++E V NF T+I+K
Sbjct: 762 SKIRCLVLDEADVMIYHQGFTDISTTIYNMVEDASDSVQSMLFSATYDEPVINFATKIIK 821
Query: 306 DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365
+ + +K+EE +L ++KQ+ V C +K I + ++ G + ++IF TK S
Sbjct: 822 NAIVVMLKREEQALPNIKQFYVQCACRDSKYAAIVN-LYS-GLAVASSVIFCHTKASVMW 879
Query: 366 LHKALKDFGYEVTTIMG-ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN 424
L++ ++ G++V + G T+ E D I+ FK G +VLI+T+V ARG D QV++++N
Sbjct: 880 LYENMRARGHQVDVLHGDMTVVERADTII-HFKRGDFKVLITTNVFARGIDVAQVSVVIN 938
Query: 425 YDPPVKH---GKHL------EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIE 475
YD P+K+ G + +PDCE YLHRIGR GRFG+ G+ NL+ D M ++ +E
Sbjct: 939 YDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGRFGKTGIAINLIDSEDSMNMINVLE 998
Query: 476 RYFDIKVTEVRNSD 489
+F +K+ + S+
Sbjct: 999 NHFQMKIARMDPSN 1012
>FB|FBgn0024804 [details] [associations]
symbol:Dbp80 "Dead box protein 80" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0044614 "nuclear pore
cytoplasmic filaments" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0015031 GO:GO:0031965 GO:GO:0005643 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AF005239 ProteinModelPortal:O61305 SMR:O61305 PaxDb:O61305
PRIDE:O61305 FlyBase:FBgn0024804 InParanoid:O61305
OrthoDB:EOG4BCC38 Bgee:O61305 GermOnline:CG17023 Uniprot:O61305
Length = 460
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 163/400 (40%), Positives = 236/400 (59%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S TFE L+L LLKG+Y M F PSKIQ +LP +L P +N+IAQ+++G+G
Sbjct: 66 NSPLHSVKTFEALHLKASLLKGIYA-MGFNTPSKIQETALPTLLADPPQNMIAQSQSGTG 124
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG-ITSECAVPTDST 211
KT FVL MLSRV+ L PQ LC+ PT ELAIQ EV +MG+ I AV +
Sbjct: 125 KTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEE- 183
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
V SK+ + ++IGTPG + W + + ++ + V DEAD M+ G D +
Sbjct: 184 --VDRSKK--IEEHILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCI 239
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI K + + HCQ+L FSAT+ + V +F IV D + + +EE SLE++KQY V C
Sbjct: 240 RIHKML---NPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCK 296
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
+E K I++ I+ +GQ IIF TK +A+ L + G+ V + G +R
Sbjct: 297 NEEGKYNAIQN-IYGC-ISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRL 354
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVK-HGKHLEPDCEVYLHRIGRA 449
++ F+ GL +VLI+T++L+RG D +Q+ ++VN+D PV G DCE YLHRIGR
Sbjct: 355 DVLDRFRSGLEKVLITTNILSRGIDIEQLQVVVNFDLPVDLDGM---ADCETYLHRIGRT 411
Query: 450 GRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 489
GRFG+ G+ NL+ D M + IE++F+ K+ EV N+D
Sbjct: 412 GRFGKSGIAINLITDEKTMKVCSDIEKHFNKKI-EVLNTD 450
>ASPGD|ASPL0000065093 [details] [associations]
symbol:AN7659 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0044614 "nuclear
pore cytoplasmic filaments" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0000822 "inositol hexakisphosphate binding" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 EMBL:BN001304 EMBL:AACD01000130 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_680928.1 ProteinModelPortal:Q5AVM1
EnsemblFungi:CADANIAT00000783 GeneID:2869488 KEGG:ani:AN7659.2
OMA:PQAICLA OrthoDB:EOG4B2X5R Uniprot:Q5AVM1
Length = 477
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 156/407 (38%), Positives = 244/407 (59%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
+ P S FEDL L P +L+GL M F+KPSKIQ +LP+++ P +NL+ Q+++G+G
Sbjct: 62 NNPLYSVKNFEDLGLDPRILQGLSA-MNFRKPSKIQERALPLLMGNPPKNLVGQSQSGTG 120
Query: 153 KTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVP 207
KT FVL +LSR+D + K PQAL + PTRELA Q + V++ MGK G+ AVP
Sbjct: 121 KTAAFVLNILSRLDLSSEQAQKTPQALILAPTRELARQIVGVIQVMGKFLDGLHIGTAVP 180
Query: 208 TDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 267
D TN P + A VV+GTPGT+ + + + ++LK++V DEAD+MLD+ G D
Sbjct: 181 AD-TNARPTR----MEASVVVGTPGTVMDMIKKRIMVAAKLKVIVLDEADNMLDQQGLGD 235
Query: 268 DSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKV 327
+R+ + R QV+LFSATF V + ++ N+L ++ EEL++E +KQ +
Sbjct: 236 QCIRVKALLPRD---IQVVLFSATFPAHVHQYASKFAPAANELTLQHEELTVEGIKQLYL 292
Query: 328 YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQE 387
C E K + +++ L +G +IIFV+T+ SA + + + G+ V ++ G
Sbjct: 293 DCASEEDKYRTLV-QLYGL-LTVGSSIIFVKTRASAVEIERRMVAEGHTVASLTGGIEGS 350
Query: 388 ERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEP---DCEVYLH 444
+RD+I+ +F+ G +VLI+T+VLARG D V++++NYD P H P D + YLH
Sbjct: 351 QRDQIIDQFRAGHAKVLITTNVLARGIDVSTVSMVINYDIPELHQPPNRPRQADFQTYLH 410
Query: 445 RIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
RIGR GRFGR GV + + + ++ ++ +I++YF+ + + D D
Sbjct: 411 RIGRTGRFGRVGVSISFVSNREEWEMLNQIQKYFNTDIQRIDTKDWD 457
>UNIPROTKB|H9KYU4 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 OMA:WHFAERI EMBL:AADN02053079
Ensembl:ENSGALT00000000632 Uniprot:H9KYU4
Length = 416
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 162/414 (39%), Positives = 245/414 (59%)
Query: 75 NKFLDEA--EDSSIKTVTTGD--TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAI 130
NK L + E+S V D +P S TFE+L+L ELL+G+Y M F +PSKIQA
Sbjct: 1 NKLLHTSLVENSHHVEVLQQDPSSPLFSIRTFEELHLKKELLQGVYT-MGFNRPSKIQAN 59
Query: 131 SLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190
+LP+++ P +NLIAQ+++G+GKT FVL MLSRV + PQ LC+ PT ELA+Q V
Sbjct: 60 ALPILMAHPPQNLIAQSQSGTGKTAAFVLAMLSRVKGAERYPQCLCLAPTYELALQIGHV 119
Query: 191 LRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLK 249
KMG+ ++ V T + +S + Q+VIGTPGT+ W ++L R+
Sbjct: 120 AEKMGR---FCNDIRV-TYAVQGNRVSPGTVLEEQIVIGTPGTMLDWCFKRRLLNMRRIC 175
Query: 250 ILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQ 309
+ V DEAD M+D GF S+RI + + + CQ+LLFSATF ET+ F +IV
Sbjct: 176 MFVLDEADVMIDTQGFSSQSIRIQRALPKD---CQMLLFSATFKETLWKFALQIVSRPII 232
Query: 310 LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH-K 368
+ +++EEL+L +++QY C + K + + + +GQ +IF +T+ SA L K
Sbjct: 233 IKLRQEELTLTNIRQYYFVCRNWEQKYEALCNLYGSI--TIGQAMIFCQTRRSADWLSVK 290
Query: 369 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428
++D G++V + +R +++ F+DG +VLI+T+V ARG D QV ++VN+ P
Sbjct: 291 MIQD-GHQVAMLTAELSIVQRADVIQRFRDGKEKVLITTNVCARGIDVAQVTIVVNFGLP 349
Query: 429 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482
+ K +PD E YLHRIGR GRFG++G+ FN++ D ++ IE +F K+
Sbjct: 350 INRQK--QPDFETYLHRIGRTGRFGKRGIAFNMV-DSHSAHLVRCIEEHFQTKI 400
>UNIPROTKB|I3L0H8 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:25628 EMBL:AC012184 ProteinModelPortal:I3L0H8 SMR:I3L0H8
PRIDE:I3L0H8 Ensembl:ENST00000417604 Bgee:I3L0H8 Uniprot:I3L0H8
Length = 447
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 135/353 (38%), Positives = 218/353 (61%)
Query: 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTG 199
+NLIAQ+++G+GKT FVL MLSRV+P+ + PQ LC+ PT ELA+Q +V+ +MGK +
Sbjct: 100 QNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPE 159
Query: 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADH 258
+ AV + + + ++ Q+VIGTPGT+ W S K + ++K+ V DEAD
Sbjct: 160 LKLAYAVRGNK-----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 214
Query: 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS 318
M+ G +D S+RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +
Sbjct: 215 MIATQGHQDQSIRIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET 271
Query: 319 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 378
L+++KQY V C K + + + + Q +IF T+ +AS L L G++V
Sbjct: 272 LDTIKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVA 329
Query: 379 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 438
+ G + E+R +++ F++G +VL++T+V ARG D +QV++++N+D PV K PD
Sbjct: 330 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD--KDGNPD 387
Query: 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
E YLHRIGR GRFG++G+ N++ M I+ +I+ +F+ K+ + D D
Sbjct: 388 NETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 440
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 145/385 (37%), Positives = 218/385 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TFE +NL P+LLKG+Y F+ PS IQ+ ++ I++ R+ IAQA++G+GKT F +G
Sbjct: 27 TFESMNLKPDLLKGIYA-YGFETPSAIQSRAIMQIISG--RDTIAQAQSGTGKTATFSIG 83
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
ML +D K QAL + PTRELAIQ V++ +G + I + + N K+
Sbjct: 84 MLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACI--GGKNVGEDVKKL 141
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
Q+V GTPG + + + L +K+L+ DEAD + + GF++ I K + S
Sbjct: 142 QQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTK-GFKEQIYEIYKHLPPS- 199
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
QV++ SAT V ++ D ++ VK++E+SL +KQY V C E K +
Sbjct: 200 --VQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLC 257
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
D L + Q +IF TK + L +K + V + G Q+ERD I+ +F+ G
Sbjct: 258 DLYDNL--TITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGN 315
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
++VLISTDV ARG D QQV+L++NYD P D E Y+HRIGR+GRFGRKG N
Sbjct: 316 SRVLISTDVWARGIDVQQVSLVINYDLPT--------DKENYIHRIGRSGRFGRKGTAIN 367
Query: 461 LLMDGDDMIIMEKIERYFDIKVTEV 485
L+ DD++ +++ E+Y+ K+ E+
Sbjct: 368 LITK-DDVVTLKEFEKYYSTKIKEM 391
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 146/405 (36%), Positives = 229/405 (56%)
Query: 79 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
D ED +K T+ +S TFE +NL +LL+G+Y F+ PS IQ+ ++ I++
Sbjct: 4 DREEDQKLKFKTSKKLKVSS--TFESMNLKDDLLRGIY-SYGFEAPSSIQSRAITQIISG 60
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
+++IAQA++G+GKT F +G+L +D K QAL + PTRELA Q +V++ +G +
Sbjct: 61 --KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM 118
Query: 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258
+ + A+ T + K Q V GTPG + + + L +++LV DEAD
Sbjct: 119 NVNA-FAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADE 177
Query: 259 MLDEA-GFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL 317
+L E GF+ I + ++ CQV++ SAT N+ + + + D ++ VK++E+
Sbjct: 178 LLSETLGFKQQIYDIFAKLPKN---CQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEI 234
Query: 318 SLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEV 377
SLE +KQY V E K + D I++ + Q +IF TK L + L + V
Sbjct: 235 SLEGIKQYVVNVDKEEWKFDTLCD-IYD-SLTITQCVIFCNTKKKVDWLSQRLIQSNFAV 292
Query: 378 TTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEP 437
++ G QEERDK++ +F+ G ++VLISTDV ARG D QQV+L++NYD P
Sbjct: 293 VSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLP--------E 344
Query: 438 DCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482
E Y+HRIGR+GRFGRKGV N + D + + +IE+++ IK+
Sbjct: 345 IIENYIHRIGRSGRFGRKGVAINFITKAD-LAKLREIEKFYSIKI 388
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 147/407 (36%), Positives = 235/407 (57%)
Query: 80 EAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
+AED S+++ T+ D TF +NL ELL+G+Y F+KPS IQ S+ I+
Sbjct: 7 QAEDLSNVEFETSEDVEVIP--TFNAMNLKEELLRGIYA-YGFEKPSAIQQRSITPIVKG 63
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
R++IAQA++G+GKT F + +L +D L+ Q LC+ PTRELA+Q +V+ +G
Sbjct: 64 --RDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMM 121
Query: 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258
+ +C V TN ++ +V GTPG + + + L +K+LV DEAD
Sbjct: 122 NV--QCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADE 179
Query: 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS 318
ML++ GF++ + + + ++ QV+L SAT + ++ + D ++ VK++EL+
Sbjct: 180 MLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTSKFMTDPIRILVKRDELT 235
Query: 319 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 378
LE +KQ+ V E K + D L + Q +IF TK L + +++ + V+
Sbjct: 236 LEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVS 293
Query: 379 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 438
++ G Q+ERD+I+KEF+ G ++VLI+TDV ARG D QQV+L++NYD P
Sbjct: 294 SMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNR------- 346
Query: 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E+Y+HRIGR+GRFGRKGV N + DD+ I+ IE+Y+ ++ E+
Sbjct: 347 -ELYIHRIGRSGRFGRKGVAINFVKS-DDIRILRDIEQYYSTQIDEM 391
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 144/387 (37%), Positives = 224/387 (57%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NL LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLREALLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISK 218
+L ++D LKA QA+ + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 89 SILQQIDVELKATQAMVLAPTRELAQQIQKVVLALGDYMGATCHACIGGTNVRN--DVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+V+GTPG + ++ + L +K+ DEAD ML GF+D I + +
Sbjct: 147 LQADVPHIVVGTPGRVFDMLNRRYLSPKYIKMFALDEADEMLSR-GFKDQIYEIFQKLAT 205
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ QV+L SAT + V T+ ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 206 DT---QVILLSATMPQEVLEVTTKFMRDPVRILVKKEELTLEGIRQFYINVEKEEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I+KEF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMEQKERDVIMKEFRS 320
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 372
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + DD + IE +++ V E+
Sbjct: 373 INMITE-DDKRTLRDIETFYNTTVEEM 398
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 151/414 (36%), Positives = 237/414 (57%)
Query: 75 NKFLDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-L 132
+K L+E DS I ++ Y T +F+ + L PELL+G+Y F++PS IQ + L
Sbjct: 5 DKGLEEIPDSQI------ESNYDEITDSFDSMELKPELLRGVYA-YGFERPSAIQQRAIL 57
Query: 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192
P++ ++IAQA++G+GKT F + L ++DPN+KA QAL + PTRELA Q +V+
Sbjct: 58 PIVKG---NDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVI 114
Query: 193 KMGKHTGITSE-CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKIL 251
+G I C T + + + P Q+V+GTPG I + + L ++K+
Sbjct: 115 AIGDFMNIQCHACIGGTAVRDDMNALREGP---QIVVGTPGRIHDMIQRRVLKTDQMKMF 171
Query: 252 VYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLF 311
+ DEAD ML GF + I + + +S+ QV+L SAT + V T+ ++D ++
Sbjct: 172 ILDEADEMLSR-GFTEQIYDIFQLLPQST---QVVLLSATMPQDVLEVTTKFMRDPVRIL 227
Query: 312 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK 371
VKK+EL+LE +KQ+ + E K+ + D ++E + Q +IF T+ L L
Sbjct: 228 VKKQELTLEGIKQFYIAVEKEEWKLDTLSD-LYET-VTITQAVIFCNTRRKVDWLTDKLT 285
Query: 372 DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKH 431
+ V+ + G Q +RD I+KEF+ G ++VLI+TD+LARG D QQV+L++NYD P
Sbjct: 286 ARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANR 345
Query: 432 GKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E Y+HRIGR GRFGRKGV N + DD+ +M +IE+++ ++ E+
Sbjct: 346 --------ENYIHRIGRGGRFGRKGVAINFVT-ADDVRMMREIEQFYSTQIEEM 390
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 145/387 (37%), Positives = 224/387 (57%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NL LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 56 SFDDMNLRETLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 111
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISK 218
+L ++D LK QAL + PTRELA Q +V+ +G + G T C T+ N V K
Sbjct: 112 SILQQIDIELKGTQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEV--QK 169
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+V+GTPG + ++ K L +K+ V DEAD ML GF+D I + +
Sbjct: 170 LQAEAPHIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEADEMLSR-GFKDQIYEIFQKLST 228
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
S QV+L SAT V + T+ +++ ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 229 S---IQVVLLSATMPAEVLDVTTKFMREPVRILVKKEELTLEGIRQFYINVEKEEWKLDT 285
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q++RD I++EF+
Sbjct: 286 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKDRDLIMREFRS 343
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 344 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 395
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + DD + IE +++ V E+
Sbjct: 396 INMVTE-DDKRTLRDIETFYNTTVEEM 421
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 147/409 (35%), Positives = 234/409 (57%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMIL 136
+D+ EDS I +T Y TF+D+NL PELL+G+Y F++PS IQ ++ IL
Sbjct: 2 VDQLEDSVI------ETNYDEVIDTFDDMNLKPELLRGIYA-YGFERPSAIQQRAIMPIL 54
Query: 137 TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196
R+++AQA++G+GKT F + +L ++D +LK QAL + PTRELA Q +V+ +G
Sbjct: 55 GE--RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGD 112
Query: 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256
+ EC T VV+GTPG + + + L +++ V DEA
Sbjct: 113 LMNV--ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEA 170
Query: 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEE 316
D ML GF+D I + + ++ QV+L SAT + V T+ ++D ++ VKK+E
Sbjct: 171 DEMLSR-GFKDQIYDIFQLLPPTA---QVVLLSATMPQDVLEVTTKFMRDPIRILVKKDE 226
Query: 317 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 376
L+LE +KQ+ V E K+ + D ++E + Q +IF T+ L + L + +
Sbjct: 227 LTLEGIKQFYVAVEKEEWKLDTLCD-LYET-VTVTQAVIFCNTRRKVDWLTEQLTERDFT 284
Query: 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 436
V+++ G Q +RD ++ EF+ G +++LI+TD+LARG D QQV+L++NYD P
Sbjct: 285 VSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANR----- 339
Query: 437 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E Y+HRIGR GRFGRKGV N + + DD+ +M +IE++++ + E+
Sbjct: 340 ---ENYIHRIGRGGRFGRKGVSINFVTN-DDVRMMREIEQFYNTHIEEM 384
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 140/387 (36%), Positives = 226/387 (58%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 320
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 372
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + D + + IE +++ + E+
Sbjct: 373 INMVTEEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 140/387 (36%), Positives = 226/387 (58%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 320
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 372
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + D + + IE +++ + E+
Sbjct: 373 INMVTEEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 140/387 (36%), Positives = 226/387 (58%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 320
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 372
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + D + + IE +++ + E+
Sbjct: 373 INMVTEEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 140/387 (36%), Positives = 226/387 (58%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 320
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 372
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + D + + IE +++ + E+
Sbjct: 373 INMVTEEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 140/387 (36%), Positives = 226/387 (58%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 320
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 372
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + D + + IE +++ + E+
Sbjct: 373 INMVTEEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 145/406 (35%), Positives = 230/406 (56%)
Query: 83 DSSIKTVTTG--DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP 139
D ++ V G ++ Y +F+++NL ELL+G+Y F++PS IQ ++ ++
Sbjct: 3 DKGLEDVPEGQIESNYDETVDSFDEMNLKSELLRGIYA-YGFERPSAIQQRAIMPVIKG- 60
Query: 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199
++IAQA++G+GKT F + +L ++D N+K QAL + PTRELA Q +V+ +G
Sbjct: 61 -HDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMN 119
Query: 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259
I EC T+ K QVV+GTPG + + + L +K+ V DEAD M
Sbjct: 120 I--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEM 177
Query: 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSL 319
L GF + I + + +S+ QV+L SAT + V T+ ++D ++ VKK+EL+L
Sbjct: 178 LSR-GFTEQIYDIFQLLPQST---QVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTL 233
Query: 320 ESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTT 379
E +KQ+ + E K+ + D ++E + Q +IF T+ L L + V+
Sbjct: 234 EGIKQFYIAVEKEEWKLDTLSD-LYET-VTITQAVIFCNTRRKVDWLTDKLTARDFTVSA 291
Query: 380 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDC 439
+ G Q +RD I+KEF+ G ++VLI+TD+LARG D QQV+L++NYD P
Sbjct: 292 MHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANR-------- 343
Query: 440 EVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E Y+HRIGR GRFGRKGV N + DD+ +M +IE+++ ++ E+
Sbjct: 344 ENYIHRIGRGGRFGRKGVAINFVT-ADDVRMMREIEQFYSTQIEEM 388
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 140/387 (36%), Positives = 226/387 (58%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 320
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 372
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + D + + IE +++ + E+
Sbjct: 373 INMVTEEDKRTLRD-IETFYNTSIEEM 398
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 140/387 (36%), Positives = 226/387 (58%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 320
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 372
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + D + + IE +++ + E+
Sbjct: 373 INMVTEEDKRTLRD-IETFYNTSIEEM 398
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 142/407 (34%), Positives = 230/407 (56%)
Query: 80 EAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
+AE + TV + + TF+ + L +LL+G+Y F+KPS IQ ++P IL
Sbjct: 5 KAEKDDMATVEFESSEEVNVIPTFDKMGLREDLLRGIYA-YGFEKPSAIQQRAVPAILKA 63
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
R++IAQA++G+GKT F + +L +D ++ QAL + PTRELA+Q +V+ +G +
Sbjct: 64 --RDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYM 121
Query: 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258
+ +C TN ++ VV GTPG + + + L +K+LV DEAD
Sbjct: 122 NV--QCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADE 179
Query: 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS 318
ML++ GF++ I + + + QV+L SAT + ++ + D ++ VK++EL+
Sbjct: 180 MLNK-GFKEQLYDIYRYLPPGA---QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELT 235
Query: 319 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 378
LE +KQ+ V E K + D L + Q ++F T+ L +K+ + V+
Sbjct: 236 LEGIKQFFVAVDREEWKFDTLIDLYDTL--TITQAVLFCNTRRKVDWLTDKMKEANFTVS 293
Query: 379 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 438
++ G Q++RD+++KEF+ G T+VLISTDV ARG D QV+L++NYD P
Sbjct: 294 SMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNR------- 346
Query: 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E+Y+HRIGR+GRFGRKGV N + DD+ I+ IE+Y+ ++ E+
Sbjct: 347 -ELYIHRIGRSGRFGRKGVAINFVKQ-DDVRILRDIEQYYSTQIDEM 391
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 138/385 (35%), Positives = 222/385 (57%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+ + L +LL+G+Y F+KPS IQ ++P IL R++IAQA++G+GKT F +
Sbjct: 27 TFDKMGLREDLLRGIYA-YGFEKPSAIQQRAIPAILKA--RDVIAQAQSGTGKTATFSIS 83
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L +D ++ QAL + PTRELA+Q +V+ +G + + +C TN ++
Sbjct: 84 VLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYMNV--QCHACIGGTNLGEDIRKL 141
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
VV GTPG + + + L +K+LV DEAD ML++ GF++ I + + +
Sbjct: 142 DYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK-GFKEQLYDIYRYLPPGA 200
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
QV+L SAT + ++ + D ++ VK++EL+LE +KQ+ V E K +
Sbjct: 201 ---QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLI 257
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
D L + Q ++F T+ L +K+ + V+++ G Q++RD+++KEF+ G
Sbjct: 258 DLYDTL--TITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGT 315
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
T+VLISTDV ARG D QV+L++NYD P E+Y+HRIGR+GRFGRKGV N
Sbjct: 316 TRVLISTDVWARGLDVPQVSLVINYDLPNNR--------ELYIHRIGRSGRFGRKGVAIN 367
Query: 461 LLMDGDDMIIMEKIERYFDIKVTEV 485
+ DD+ I+ IE+Y+ ++ E+
Sbjct: 368 FVKQ-DDVRILRDIEQYYSTQIDEM 391
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 134/384 (34%), Positives = 227/384 (59%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+D+ L LL+G++ F++PS IQ ++ I+ +++AQA++G+GKT F +
Sbjct: 24 FDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAA 80
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L R+D ++KAPQAL + PTRELA+Q +V+ + H I + T++V ++
Sbjct: 81 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI--GGTSFVEDAEGLR 138
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG 281
AQ+V+GTPG + + ++ ++K+ + DEAD ML +GF++ +I + ++
Sbjct: 139 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS-SGFKEQIYQIFTLLPPTT- 195
Query: 282 HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 341
QV+L SAT V T+ +++ ++ VKK+EL+LE +KQ+ V +E K + D
Sbjct: 196 --QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 253
Query: 342 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401
+++ + Q +IF T+ L L++ + V+ I Q+ERD I+KEF+ G +
Sbjct: 254 -LYD-SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 311
Query: 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461
++LISTD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N
Sbjct: 312 RILISTDLLARGIDVQQVSLVINYDLPANK--------ENYIHRIGRGGRFGRKGVAINF 363
Query: 462 LMDGDDMIIMEKIERYFDIKVTEV 485
+ + +D+ M ++E+++ ++ E+
Sbjct: 364 VTN-EDVGAMRELEKFYSTQIEEL 386
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 134/384 (34%), Positives = 227/384 (59%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+D+ L LL+G++ F++PS IQ ++ I+ +++AQA++G+GKT F +
Sbjct: 24 FDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAA 80
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L R+D ++KAPQAL + PTRELA+Q +V+ + H I + T++V ++
Sbjct: 81 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI--GGTSFVEDAEGLR 138
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG 281
AQ+V+GTPG + + ++ ++K+ + DEAD ML +GF++ +I + ++
Sbjct: 139 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS-SGFKEQIYQIFTLLPPTT- 195
Query: 282 HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 341
QV+L SAT V T+ +++ ++ VKK+EL+LE +KQ+ V +E K + D
Sbjct: 196 --QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 253
Query: 342 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401
+++ + Q +IF T+ L L++ + V+ I Q+ERD I+KEF+ G +
Sbjct: 254 -LYD-SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 311
Query: 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461
++LISTD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N
Sbjct: 312 RILISTDLLARGIDVQQVSLVINYDLPANK--------ENYIHRIGRGGRFGRKGVAINF 363
Query: 462 LMDGDDMIIMEKIERYFDIKVTEV 485
+ + +D+ M ++E+++ ++ E+
Sbjct: 364 VTN-EDVGAMRELEKFYSTQIEEL 386
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 136/394 (34%), Positives = 230/394 (58%)
Query: 93 DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGS 151
+T Y + F+DLNL P +++G++ ++ PS IQ ++ + +T R+++AQA++G+
Sbjct: 15 ETNYDNVVYKFDDLNLKPNIVRGIF-GYGYETPSAIQQRAI-LPITEG-RDVLAQAQSGT 71
Query: 152 GKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST 211
GKT F + L R++ N KA QAL + PTRELA+Q V+ +G + +T ++ S
Sbjct: 72 GKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSM 131
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLR 271
+ + R V Q+V+GTPG + + + ++K+ + DEAD ML +GF++
Sbjct: 132 SDDIEAFRSGV--QIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLS-SGFKEQIYN 188
Query: 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331
I + + ++ Q++L SAT + V T+ + + ++ VKK+EL+LE +KQ+ +
Sbjct: 189 IFRLLPETT---QIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEL 245
Query: 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
E K + D +++ + Q +IF T++ L L++ + V+ I Q ERD
Sbjct: 246 EDYKFDCLCD-LYD-SISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDT 303
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
I+KEF+ G +++LISTD+LARG D QQV+L++NYD P E Y+HRIGR GR
Sbjct: 304 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK--------ENYIHRIGRGGR 355
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
FGRKGV N + D D + +M +IE+++ ++ E+
Sbjct: 356 FGRKGVAINFVTDRD-VGMMREIEKFYSTQIEEM 388
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 142/386 (36%), Positives = 225/386 (58%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ +LK QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D +I + ++
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKD---QIYEIFQKL 204
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
S + QV+L SAT V + +++ ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 205 STNIQVVLLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 264
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 265 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 374
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 375 NFVTEEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 136/394 (34%), Positives = 230/394 (58%)
Query: 93 DTPYTSAT-TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGS 151
+T Y + F+DLNL P +++G++ ++ PS IQ ++ + +T R+++AQA++G+
Sbjct: 15 ETNYDNVVYKFDDLNLKPNIVRGIF-GYGYETPSAIQQRAI-LPITEG-RDVLAQAQSGT 71
Query: 152 GKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST 211
GKT F + L R++ N KA QAL + PTRELA+Q V+ +G + +T ++ S
Sbjct: 72 GKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSM 131
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLR 271
+ + R V Q+V+GTPG + + + ++K+ + DEAD ML +GF++
Sbjct: 132 SDDIEAFRSGV--QIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLS-SGFKEQIYN 188
Query: 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331
I + + ++ Q++L SAT + V T+ + + ++ VKK+EL+LE +KQ+ +
Sbjct: 189 IFRLLPETT---QIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEL 245
Query: 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
E K + D +++ + Q +IF T++ L L++ + V+ I Q ERD
Sbjct: 246 EDYKFDCLCD-LYD-SISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDT 303
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
I+KEF+ G +++LISTD+LARG D QQV+L++NYD P E Y+HRIGR GR
Sbjct: 304 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK--------ENYIHRIGRGGR 355
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
FGRKGV N + D D + +M +IE+++ ++ E+
Sbjct: 356 FGRKGVAINFVTDRD-VGMMREIEKFYSTQIEEM 388
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 142/386 (36%), Positives = 220/386 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D I + + S
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS 207
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 208 ---IQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 264
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 265 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 374
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 375 NFVTEEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 142/386 (36%), Positives = 220/386 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D I + + S
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS 207
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 208 ---IQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 264
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 265 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 374
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 375 NFVTEEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 142/386 (36%), Positives = 220/386 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D I + + S
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS 207
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 208 ---IQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 264
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 265 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 374
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 375 NFVTEEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 142/386 (36%), Positives = 220/386 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D I + + S
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS 207
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 208 ---IQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 264
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 265 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 374
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 375 NFVTEEDKRILRD-IETFYNTTVEEM 399
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 142/386 (36%), Positives = 220/386 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D I + + S
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS 207
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 208 ---IQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 264
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 265 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 374
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 375 NFVTEEDKRILRD-IETFYNTTVEEM 399
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 142/386 (36%), Positives = 220/386 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D I + + S
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS 207
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 208 ---IQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 264
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 265 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 374
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 375 NFVTEEDKRILRD-IETFYNTTVEEM 399
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 142/386 (36%), Positives = 220/386 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 36 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 91
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 92 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 149
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D I + + S
Sbjct: 150 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS 208
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 209 ---IQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 265
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 266 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 323
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 324 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 375
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 376 NFVTEEDKRILRD-IETFYNTTVEEM 400
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 140/385 (36%), Positives = 217/385 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL ELL+G+Y F+KPS IQ ++ P + R++IAQA++G+GKT F +
Sbjct: 32 FDDMNLREELLRGIY-GYGFEKPSAIQQRAIIPCVRG---RDVIAQAQSGTGKTATFSIA 87
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L ++D +++ QAL + PTRELA Q V+ +G++ + S + TN ++
Sbjct: 88 ILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACI--GGTNVREDARIL 145
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
VV+GTPG + ++ K L +K+ V DEAD ML GF+D + K +
Sbjct: 146 ESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSR-GFKDQIQDVFKMLPPD- 203
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
QV+L SAT V ++D + VKKEEL+LE +KQ+ V E K+ +
Sbjct: 204 --VQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLC 261
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
D L + Q++IF T+ L + + + V+ + G Q +R+ I+K+F+ G
Sbjct: 262 DLYDTLS--ITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGS 319
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV N
Sbjct: 320 SRVLITTDLLARGIDVQQVSLVINYDLPSNR--------ENYIHRIGRGGRFGRKGVAIN 371
Query: 461 LLMDGDDMIIMEKIERYFDIKVTEV 485
+ D DD I++ IE+++ + E+
Sbjct: 372 FITD-DDRRILKDIEQFYHTTIEEM 395
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 140/408 (34%), Positives = 226/408 (55%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+D D ++ T+ + T A TFED++L LL+G+Y ++ PS +Q+ ++ I
Sbjct: 5 IDRRADDKMEFNTSKEV--TVAPTFEDMHLKESLLRGIYA-YGYESPSAVQSRAIVQICK 61
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197
R+ IAQA++G+GKT F + L +D ++ QAL + PTRELA Q V+ +G +
Sbjct: 62 G--RDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDY 119
Query: 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257
+ +C TN ++ VV GTPG + + + L +K+LV DEAD
Sbjct: 120 MNV--QCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEAD 177
Query: 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL 317
+L+ GFR+ + + + ++ QV++ SAT V + T+ + D ++ VK++EL
Sbjct: 178 ELLNR-GFREQIYDVYRYLPPAT---QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDEL 233
Query: 318 SLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEV 377
+LE +KQY + E K + D L + Q +IF T+ L +++ + V
Sbjct: 234 TLEGIKQYFIAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTRRKVDWLTDKMREANFTV 291
Query: 378 TTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEP 437
+++ G Q+ERD I+++F+ G ++VLISTDV ARG D QQV+L++NYD P
Sbjct: 292 SSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNR------ 345
Query: 438 DCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E Y+HRIGR+GRFGRKGV N + DD+ I+ IE Y+ ++ E+
Sbjct: 346 --ENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEM 390
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 143/420 (34%), Positives = 236/420 (56%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK 305
+K+LV DEAD ML++ GF++ + + + ++ QV+L SAT + + +
Sbjct: 179 RAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTNKFMT 234
Query: 306 DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365
D ++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK
Sbjct: 235 DPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDW 292
Query: 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425
L + +++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NY
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 352
Query: 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
D P E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 353 DLPNNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 143/420 (34%), Positives = 236/420 (56%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK 305
+K+LV DEAD ML++ GF++ + + + ++ QV+L SAT + + +
Sbjct: 179 RAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTNKFMT 234
Query: 306 DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365
D ++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK
Sbjct: 235 DPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDW 292
Query: 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425
L + +++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NY
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 352
Query: 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
D P E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 353 DLPNNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 143/420 (34%), Positives = 236/420 (56%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK 305
+K+LV DEAD ML++ GF++ + + + ++ QV+L SAT + + +
Sbjct: 179 RAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTNKFMT 234
Query: 306 DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365
D ++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK
Sbjct: 235 DPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDW 292
Query: 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425
L + +++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NY
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 352
Query: 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
D P E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 353 DLPNNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 143/420 (34%), Positives = 236/420 (56%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK 305
+K+LV DEAD ML++ GF++ + + + ++ QV+L SAT + + +
Sbjct: 179 RAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTNKFMT 234
Query: 306 DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365
D ++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK
Sbjct: 235 DPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDW 292
Query: 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425
L + +++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NY
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 352
Query: 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
D P E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 353 DLPNNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 143/420 (34%), Positives = 236/420 (56%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y F+KPS
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPS 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK 305
+K+LV DEAD ML++ GF++ + + + ++ QV+L SAT + + +
Sbjct: 179 RAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTNKFMT 234
Query: 306 DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365
D ++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK
Sbjct: 235 DPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDW 292
Query: 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425
L + +++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NY
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 352
Query: 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
D P E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 353 DLPNNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 141/421 (33%), Positives = 237/421 (56%)
Query: 65 GLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKP 124
G T ++K + + E + + ++ T+ + T TF+ + L +LL+G+Y F+KP
Sbjct: 8 GGTTGSARK--RIMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKP 62
Query: 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184
S IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA
Sbjct: 63 SAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELA 120
Query: 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLG 244
+Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 VQIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLR 178
Query: 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIV 304
+K+LV DEAD ML++ GF++ + + + ++ QV+L SAT + + +
Sbjct: 179 TRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTNKFM 234
Query: 305 KDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSAS 364
D ++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK
Sbjct: 235 TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVD 292
Query: 365 ALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN 424
L + +++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+N
Sbjct: 293 WLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 352
Query: 425 YDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
YD P E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E
Sbjct: 353 YDLPNNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDE 403
Query: 485 V 485
+
Sbjct: 404 M 404
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 141/386 (36%), Positives = 224/386 (58%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 39 FDDMNLKETLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 94
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G + C T+ N + K
Sbjct: 95 ILQQLEIEQKETQALVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRN--EMQKL 152
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D +I + ++
Sbjct: 153 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKD---QIYEIFQKL 208
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
S + QV+L SAT V T+ +++ ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 209 STNIQVVLLSATMPADVLEVTTKFMREPVRILVKKEELTLEGIKQFYINVEREEWKLDTL 268
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 269 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSG 326
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 327 SSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAI 378
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE +++ V E+
Sbjct: 379 NFVTEEDKRILRD-IETFYNTTVEEM 403
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 141/410 (34%), Positives = 231/410 (56%)
Query: 76 KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMI 135
+ L E + + I+ T+ + T TF+ + L +LL+G+Y F+KPS IQ ++ I
Sbjct: 11 RILKEEDMTKIEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQI 67
Query: 136 LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195
+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA Q +VL +G
Sbjct: 68 IKG--RDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALG 125
Query: 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255
+ + +C TN ++ VV GTPG + + + L +K+LV DE
Sbjct: 126 DYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 183
Query: 256 ADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 315
AD ML++ GF++ + + + ++ QV L SAT + + + D ++ VK++
Sbjct: 184 ADEMLNK-GFKEQIYDVYRYLPPAT---QVCLISATLPHEILEMTNKFMTDPIRILVKRD 239
Query: 316 ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY 375
EL+LE +KQ+ V E K + D L + Q +IF TK L + +++ +
Sbjct: 240 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANF 297
Query: 376 EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHL 435
V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NYD P
Sbjct: 298 TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNR---- 353
Query: 436 EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 354 ----ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 398
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 139/386 (36%), Positives = 219/386 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+ L L+ +LL+G+Y F+KPS IQ + IL Y + I QA++G+GKT FV+
Sbjct: 24 TFDALGLNEKLLRGIY-SYGFEKPSAIQQRGIKPILNG-Y-DTIGQAQSGTGKTATFVIS 80
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
L ++ + A QAL + PTRELA Q +V+ +G + + +C T +
Sbjct: 81 SLQLINYDYVACQALILAPTRELAQQIQKVVLALGDYLKV--KCHACVGGTVVREDIDKL 138
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
+V+GTPG + + + LG RLK+ + DEAD ML GF+ + K +
Sbjct: 139 KQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSR-GFKAQIYEVFKKLVPD- 196
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
QV LFSAT + + TR ++D + VKK+EL+LE ++Q+ V E K+ +
Sbjct: 197 --IQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLC 254
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
D ++E + Q+II+ T+ L + + + + V+ + G Q++RD I++EF+ G
Sbjct: 255 D-LYET-LTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGS 312
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
T+VL++TD+LARG D QQV+L++NYD P PD Y+HRIGR+GRFGRKGV N
Sbjct: 313 TRVLVTTDLLARGIDVQQVSLVINYDLPAS------PD--TYIHRIGRSGRFGRKGVAIN 364
Query: 461 LLMDGD-DMIIMEKIERYFDIKVTEV 485
+ + D + ++KIE Y+ ++ E+
Sbjct: 365 FVTNDDKEKDKLKKIESYYSTQIEEM 390
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 139/386 (36%), Positives = 219/386 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+ L L+ +LL+G+Y F+KPS IQ + IL Y + I QA++G+GKT FV+
Sbjct: 24 TFDALGLNEKLLRGIY-SYGFEKPSAIQQRGIKPILNG-Y-DTIGQAQSGTGKTATFVIS 80
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
L ++ + A QAL + PTRELA Q +V+ +G + + +C T +
Sbjct: 81 SLQLINYDYVACQALILAPTRELAQQIQKVVLALGDYLKV--KCHACVGGTVVREDIDKL 138
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
+V+GTPG + + + LG RLK+ + DEAD ML GF+ + K +
Sbjct: 139 KQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSR-GFKAQIYEVFKKLVPD- 196
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
QV LFSAT + + TR ++D + VKK+EL+LE ++Q+ V E K+ +
Sbjct: 197 --IQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLC 254
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
D ++E + Q+II+ T+ L + + + + V+ + G Q++RD I++EF+ G
Sbjct: 255 D-LYET-LTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGS 312
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
T+VL++TD+LARG D QQV+L++NYD P PD Y+HRIGR+GRFGRKGV N
Sbjct: 313 TRVLVTTDLLARGIDVQQVSLVINYDLPAS------PD--TYIHRIGRSGRFGRKGVAIN 364
Query: 461 LLMDGD-DMIIMEKIERYFDIKVTEV 485
+ + D + ++KIE Y+ ++ E+
Sbjct: 365 FVTNDDKEKDKLKKIESYYSTQIEEM 390
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 141/404 (34%), Positives = 222/404 (54%)
Query: 82 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYR 141
+D + T G P TS F D+ + ++L+G+Y E F+KPS IQ ++ IL R
Sbjct: 20 DDKLVFETTDGIEPITS---FNDMGIKEDVLRGVY-EYGFEKPSAIQQRAVMPILQG--R 73
Query: 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201
++IAQA++G+GKT+ L + VD + + QAL + PTRELA Q + ++ +G H I
Sbjct: 74 DVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQ 133
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
+ + +S I K VV GTPG + + + L +K+L+ DE+D ML
Sbjct: 134 AHACIGGNSVGE-DIRKLEH-GVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLS 191
Query: 262 EAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES 321
GF+D + + + QV L SAT + ++ + + ++ VK++EL+LE
Sbjct: 192 R-GFKDQIYDVYRYLPPD---LQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEG 247
Query: 322 VKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIM 381
+KQ+ V E K + D L + Q +IF TK L + ++ + V+++
Sbjct: 248 IKQFFVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMH 305
Query: 382 GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEV 441
G Q+ERD I+ EF+ G ++VLI+TDV ARG D QQV+L++NYD P E+
Sbjct: 306 GDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNR--------EL 357
Query: 442 YLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
Y+HRIGR+GRFGRKGV N + DD+ I+ IE+Y+ ++ E+
Sbjct: 358 YIHRIGRSGRFGRKGVAINFVKS-DDIKILRDIEQYYSTQIDEM 400
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 135/386 (34%), Positives = 220/386 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
TFE + L ELL+G++ F+KPS IQ + LP+I R+ IAQA++G+GKT F +
Sbjct: 33 TFESMGLREELLRGIF-NYGFEKPSAIQQRAILPIIKG---RDTIAQAQSGTGKTATFSI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219
G L V+ N+++PQ L + PTRELA Q +V + + I V N K+
Sbjct: 89 GALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACV--GGKNLSDDVKK 146
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V GTPG + ++ K L +K+++ DEAD ML GF+ + + +
Sbjct: 147 LETGVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLS-LGFQQQINDVYRYLPNG 205
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
+ Q++L SAT + V + + + ++ +K++EL+L+ +KQ+ V E K +
Sbjct: 206 T---QIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTL 262
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D I++ + Q +IF TK L + ++D + V ++ G +Q+ER++I+K F+ G
Sbjct: 263 CD-IYD-SLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSG 320
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
+VLI+TD+LARG D QQV+L++NYD P+ D E Y+HRIGR+GRFGRKGV
Sbjct: 321 ENRVLITTDILARGIDVQQVSLVINYDLPI--------DRENYIHRIGRSGRFGRKGVAI 372
Query: 460 NLLMDGDDMIIMEKIERYFDIKVTEV 485
N + + D I+ + IE+++ ++ E+
Sbjct: 373 NFVKNSDIRILRD-IEQFYSTQIDEM 397
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 134/407 (32%), Positives = 232/407 (57%)
Query: 79 DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP 138
DE ++ ++ T+ D + ++FE++NL +LL+G+Y ++ PS +Q+ ++ I
Sbjct: 3 DEIMEN-VELTTSEDV--NAVSSFEEMNLKEDLLRGIYA-YGYETPSAVQSRAIIQICKG 58
Query: 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198
R++IAQA++G+GKT F +G+L +D +++ QAL + PTRELA+Q V+ +G H
Sbjct: 59 --RDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258
+ +C T+ K+ VV GTPG + + + L +K+L+ DEAD
Sbjct: 117 NV--QCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADE 174
Query: 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS 318
+L++ GF++ I + + + QV++ SAT + V + + ++ VK++EL+
Sbjct: 175 LLNQ-GFKEQIYDIYRYLPPGT---QVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELT 230
Query: 319 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 378
LE +KQY + E K + D L + Q +IF ++ L + +++ + VT
Sbjct: 231 LEGLKQYFIAVEKEEWKFDTLCDLYDTL--TITQAVIFCNSRRKVDWLTEKMREANFTVT 288
Query: 379 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 438
++ G Q+ERD I+++F+ G ++VLI TD+ ARG D QQV+L++NYD P
Sbjct: 289 SMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANR------- 341
Query: 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E Y+HRIGR+GRFGRKGV N + + +D+ I+ IE+Y+ + E+
Sbjct: 342 -ENYIHRIGRSGRFGRKGVAINFVTN-EDVRILRDIEQYYSTVIDEM 386
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 135/391 (34%), Positives = 220/391 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F+D+ L ELL+G+Y F+KPS IQ ++ T +++IAQA++G+GKT F +
Sbjct: 30 SFDDMELKEELLRGIY-GFGFEKPSAIQKRAIVPCTTG--KDVIAQAQSGTGKTATFSVS 86
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L R+D QAL + PTRELA Q +V+ +G++ + + T+ ++
Sbjct: 87 ILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCI--GGTSVRDDQRKL 144
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
VV+GTPG + ++ L SR+K+ V DEAD ML GF+D + + + +
Sbjct: 145 EAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSR-GFKDQIYEVFRSMPQD- 202
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
QV+L SAT V + R +++ ++ VKK+EL+LE ++Q+ + + K +
Sbjct: 203 --VQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLC 260
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
D ++ + + Q +IF T+ L + + + + V+ + G Q ERD I++EF+ G
Sbjct: 261 D-LYNV-VNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGS 318
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR+GRFGRKGV N
Sbjct: 319 SRVLITTDILARGIDVQQVSLVINYDLPSNR--------ENYIHRIGRSGRFGRKGVAIN 370
Query: 461 LLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
+ + D + E IE Y+ ++ E+ S D
Sbjct: 371 FVTENDARQLKE-IESYYTTQIEEMPESIAD 400
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 135/387 (34%), Positives = 221/387 (57%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ L+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRIX-----LTLEGIRQFYINVEREEWKLDT 257
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 258 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 315
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G ++VLI+TD+LARG D QQV+L++NYD P E Y+HRIGR GRFGRKGV
Sbjct: 316 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVA 367
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485
N++ + D + + IE +++ + E+
Sbjct: 368 INMVTEEDKRTLRD-IETFYNTSIEEM 393
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 139/391 (35%), Positives = 219/391 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F+ + L P+LL+G+Y F+KPS IQ + I ++I QA++G+GKT F G
Sbjct: 42 SFDAMELQPDLLRGIYA-YGFEKPSAIQQRGI--IPFCKGLDVIQQAQSGTGKTATFCSG 98
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L ++D +L QAL + PTRELA Q +V+R +G + G+ ++ V S +
Sbjct: 99 VLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQS 158
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
V VV+GTPG + + + L +K+ V DEAD ML GF+D I + +
Sbjct: 159 GV--HVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSR-GFKDQIYDIFQLLPSK- 214
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
QV +FSAT + + ++ VK++EL+LE +KQ+ V E K+ +
Sbjct: 215 --VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLC 272
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
D ++E + Q++IFV T+ L ++ + V+ G Q RD I++EF+ G
Sbjct: 273 D-LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 330
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
++VLI+TD+LARG D QQV+L++N+D P +P E YLHRIGR+GRFGRKGV N
Sbjct: 331 SRVLITTDLLARGIDVQQVSLVINFDLPT------QP--ENYLHRIGRSGRFGRKGVAIN 382
Query: 461 LLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
M +D +M I+R++++ V E+ ++ D
Sbjct: 383 F-MTSEDERMMADIQRFYNVVVEELPSNVAD 412
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 135/420 (32%), Positives = 229/420 (54%)
Query: 67 TIDESKKVNKFLDEAED-SSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPS 125
T+ S K L + ED + ++ T+ + T TF+ + L +LL+G+Y + +P
Sbjct: 6 TMATSGSARKRLLKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYAYGR-PEPG 62
Query: 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185
Q + +++ N + +++G+GKT F + +L +D ++ QAL + PTRELA+
Sbjct: 63 AFQQRKILVVMKS--NNAVVISQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 120
Query: 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245
Q + L +G + + +C TN ++ VV GTPG + + + L
Sbjct: 121 QIQKGLLALGDYMNV--QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 178
Query: 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK 305
+K+LV DEAD ML++ GF++ + + + ++ QV+L SAT + + +
Sbjct: 179 RAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTNKFMT 234
Query: 306 DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365
D ++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK
Sbjct: 235 DPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDW 292
Query: 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425
L + +++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+LI+NY
Sbjct: 293 LTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 352
Query: 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
D P E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 353 DLPNNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEM 403
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 128/363 (35%), Positives = 210/363 (57%)
Query: 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183
P++ +AI LP I Y ++IAQA++G+GKT F + +L +++ +LKA QAL + PTREL
Sbjct: 74 PTRQRAI-LPCI--KGY-DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTREL 129
Query: 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISKRPPVTAQVVIGTPGTIKKWMSAKK 242
A Q +V+ +G + G + C TN + K +++GTPG + ++ +
Sbjct: 130 AQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY 187
Query: 243 LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 302
L +K+ V DEAD ML GF+D +I ++ + + QV+L SAT V +
Sbjct: 188 LSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQKLNSNTQVVLLSATMPSDVLEVTKK 243
Query: 303 IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS 362
++D ++ VKKEEL+LE ++Q+ + E K+ + D ++E + Q +IF+ T+
Sbjct: 244 FMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD-LYET-LTITQAVIFINTRRK 301
Query: 363 ASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI 422
L + + + V+ + G Q+ERD I++EF+ G ++VLI+TD+LARG D QQV+L+
Sbjct: 302 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 361
Query: 423 VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482
+NYD P E Y+HRIGR GRFGRKGV N++ + D + + IE +++ +
Sbjct: 362 INYDLPTNR--------ENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRD-IETFYNTSI 412
Query: 483 TEV 485
E+
Sbjct: 413 EEM 415
>UNIPROTKB|Q58DE5 [details] [associations]
symbol:DDX19L "ATP-dependent RNA helicase DDX19A"
species:9913 "Bos taurus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
UniGene:Bt.49612 HOVERGEN:HBG107989 EMBL:DAAA02045970 EMBL:BT021652
IPI:IPI00694012 SMR:Q58DE5 Ensembl:ENSBTAT00000027604
Uniprot:Q58DE5
Length = 394
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 119/299 (39%), Positives = 183/299 (61%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
++P S +FE+L L P+LL+G+Y M F +PSKIQ +LPM+L P +NLIAQ+++G+G
Sbjct: 84 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTG 142
Query: 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDST 211
KT FVL MLSRV+P + PQ LC+ PT ELA+Q +V+ +MGK H + AV +
Sbjct: 143 KTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK- 201
Query: 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSL 270
+ + ++ +VIGTPGT+ W S K + ++K+ V DEAD M+ G +D S+
Sbjct: 202 ----LERGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 257
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
RI + + R+ CQ+LLFSATF ++V F ++V D N + +K+EE +L+++KQY V C
Sbjct: 258 RIQRMLPRN---CQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCN 314
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 389
K + + I+ + Q +IF T+ +AS L L G++V + G + E+R
Sbjct: 315 SRDEKFQALCN-IYG-AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQR 371
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 141/410 (34%), Positives = 218/410 (53%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 84 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 140
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 141 NGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 199
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEAD +L + D
Sbjct: 200 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQ-----D 254
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFVT-RIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+T + K Y + EEL+L+ V QY
Sbjct: 255 FMQIMEDIIMTLPKNRQILLYSATFPLSVQKFMTLHLQKPYEINLM--EELTLKGVTQYY 312
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 313 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 369
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 370 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 421
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS-DEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + +S D++ A
Sbjct: 422 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSSIDKNLYVA 470
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 139/389 (35%), Positives = 204/389 (52%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF DL L +L+ L ++ ++KPS IQA +P +L R+++ A+ GSGKT F L
Sbjct: 6 TTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSL 62
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS-- 217
+L +DP LKAPQ L + PTRELA+Q E + KH + A+ V +
Sbjct: 63 PLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277
++ P Q+V+GTPG + + L S+L LV DEAD ML GF +D IM I
Sbjct: 123 RQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIEDVETIMAQIP 178
Query: 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ-YKVYCPDELAKV 336
GH Q LFSAT E ++ R +K+ ++ ++ + + Q Y +
Sbjct: 179 E--GH-QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEA 235
Query: 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396
+V R E E IIFVRTKN+ + +AL+ GY + G Q R++ ++
Sbjct: 236 LV---RFLE-AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291
Query: 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456
KDG +LI+TDV ARG D ++++L+VNYD P+ D E Y+HRIGR GR GR G
Sbjct: 292 KDGRLDILIATDVAARGLDVERISLVVNYDIPM--------DSESYVHRIGRTGRAGRAG 343
Query: 457 VVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
L ++ + ++ IER + + EV
Sbjct: 344 RAL-LFVENRERRLLRNIERTMKLTIPEV 371
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 133/399 (33%), Positives = 217/399 (54%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED L ELL G+Y E F++PS IQ S+P+ LT R+++A+A+NG
Sbjct: 122 TEDVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALTG--RDILARAKNG 178
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F + +L ++D + QA+ I PTRELA+Q +V +++GKH I + V T
Sbjct: 179 TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKI--QVMVTTGG 236
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHMLDEAGFRD 267
T+ R +++GTPG I + K G LK +LV DEAD +L + F+
Sbjct: 237 TSLKDDIMRLYQPVHLLVGTPGRI---LDLTKKGVCVLKDCSVLVMDEADKLLSQE-FQP 292
Query: 268 DSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK-KEELSLESVKQYK 326
++ + S Q+L+FSATF TVK+F R + N + +EL+L+ + Q+
Sbjct: 293 SVEHLISFLPESR---QILMFSATFPVTVKDFKDRFLT--NPYVINLMDELTLKGITQFY 347
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
+ +E K+ + +L ++ Q+IIF + N L K + + GY I +Q
Sbjct: 348 AFV-EERQKIHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQ 404
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
+ R+++ +F++G + L+ TD+ RG D Q VN+++N+D P + E YLHR+
Sbjct: 405 DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------KNAETYLHRV 456
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
GR+GRFG G+ NL+ +D + +IE+ ++ ++
Sbjct: 457 GRSGRFGHLGLAVNLITY-EDRFNLYRIEQELGTEIKQI 494
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 142/428 (33%), Positives = 230/428 (53%)
Query: 64 EGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQK 123
EG D +++ ++ L+E D + T+ D + S F+ + L LL+G+Y F+K
Sbjct: 7 EGTQFD-TRQFDQRLNEVLDGQDEFFTSYDEVHES---FDAMGLQENLLRGIYA-YGFEK 61
Query: 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183
PS IQ + ++I QA++G+GKT F G+L ++D L QAL + PTREL
Sbjct: 62 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTREL 119
Query: 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243
A Q +V+R +G + G+ V T+ + VV+GTPG + + + L
Sbjct: 120 AQQIEKVMRALGDYQGVKVHACV--GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL 177
Query: 244 GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 303
+K+ V DEAD ML GF+D I + + QV +FSAT +
Sbjct: 178 RPDCIKMFVLDEADEMLSR-GFKDQIYDIFQLLPPK---IQVGVFSATMPPEALEITRKF 233
Query: 304 VKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSA 363
+ ++ VK++EL+LE +KQ+ V E K+ + D ++E + Q++IFV T+
Sbjct: 234 MSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCD-LYET-LAITQSVIFVNTRRKV 291
Query: 364 SALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIV 423
L ++ + V+ G Q RD I++EF+ G ++VLI+TD+LARG D QQV+L++
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 424 NYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483
N+D P +P E YLHRIGR+GRFGRKGV N + D ++ + I++++++ V
Sbjct: 352 NFDLPT------QP--ENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFD-IQKFYNVVVE 402
Query: 484 EVRNSDED 491
E+ ++ D
Sbjct: 403 ELPSNVAD 410
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 132/390 (33%), Positives = 211/390 (54%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
Y T+FE++ + LL+G+Y F+KPS IQ + IL R++I Q+++G+GKT
Sbjct: 13 YEICTSFENIGIDEGLLRGIYA-YGFEKPSAIQQRGIKPILNG--RDVILQSQSGTGKTC 69
Query: 156 CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP 215
F +G L+ V+ NL Q + + PTRELA Q +V + + +T C + +
Sbjct: 70 VFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMS--D 127
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275
K V+ GTPG I ++ + L +K LV DEAD ML++ GF++ I +
Sbjct: 128 DIKALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNK-GFKEQVYDIYRF 186
Query: 276 IERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 335
+ S + Q++L SAT + V + + ++ VK++EL+LE +KQ+ V E K
Sbjct: 187 L---SPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWK 243
Query: 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395
+ D ++E + Q ++F T+ L K + + + V + Q ERD I+ +
Sbjct: 244 YETLAD-LYE-SLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLK 301
Query: 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 455
F+ +VLISTD+ RG D Q+V+L+VNYD P E Y+HRIGR+GRFGRK
Sbjct: 302 FRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSR--------ESYIHRIGRSGRFGRK 353
Query: 456 GVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
GV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 354 GVAINFVKN-DDIKILRDIEQYYSTQIDEM 382
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 132/390 (33%), Positives = 211/390 (54%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
Y T+FE++ + LL+G+Y F+KPS IQ + IL R++I Q+++G+GKT
Sbjct: 13 YEICTSFENIGIDEGLLRGIYA-YGFEKPSAIQQRGIKPILNG--RDVILQSQSGTGKTC 69
Query: 156 CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP 215
F +G L+ V+ NL Q + + PTRELA Q +V + + +T C + +
Sbjct: 70 VFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMS--D 127
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275
K V+ GTPG I ++ + L +K LV DEAD ML++ GF++ I +
Sbjct: 128 DIKALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNK-GFKEQVYDIYRF 186
Query: 276 IERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 335
+ S + Q++L SAT + V + + ++ VK++EL+LE +KQ+ V E K
Sbjct: 187 L---SPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWK 243
Query: 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395
+ D ++E + Q ++F T+ L K + + + V + Q ERD I+ +
Sbjct: 244 YETLAD-LYE-SLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLK 301
Query: 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 455
F+ +VLISTD+ RG D Q+V+L+VNYD P E Y+HRIGR+GRFGRK
Sbjct: 302 FRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSR--------ESYIHRIGRSGRFGRK 353
Query: 456 GVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
GV N + + DD+ I+ IE+Y+ ++ E+
Sbjct: 354 GVAINFVKN-DDIKILRDIEQYYSTQIDEM 382
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 141/429 (32%), Positives = 224/429 (52%)
Query: 60 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEM 119
+L + G T D+ +K +D+ KT DT FE+ L ELL G++ E
Sbjct: 21 DLQIAGNTSDDMGWKSKLKLPPKDNRFKTTDVTDT---RGNEFEEFCLKRELLMGIF-EK 76
Query: 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179
+++PS IQ ++P+ L+ ++++A+A+NG+GKT + + +L ++DP QAL + P
Sbjct: 77 GWERPSPIQEAAIPIALSG--KDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVP 134
Query: 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMS 239
TRELA+Q ++ ++ KH I V T T R Q++I TPG I M
Sbjct: 135 TRELALQTSQICIELAKHLDI--RVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMD 192
Query: 240 AKKLGFSRLKILVYDEADHML--DEAGFRDDS-LRIMKDIERSSGHCQVLLFSATFNETV 296
K S +ILV DEAD +L D G D L++ KD Q+LLFSATF TV
Sbjct: 193 KKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDP-------QILLFSATFPLTV 245
Query: 297 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIF 356
KNF+ + +++ ++ + EEL+L+ V QY + E KV + +L ++ Q+IIF
Sbjct: 246 KNFMEKHLREPYEINLM-EELTLKGVTQYYAFV-QERQKVHCLNTLFSKL--QINQSIIF 301
Query: 357 VRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416
+ L K + + GY I Q R+++ +F+ GL + L+ +D+ RG D
Sbjct: 302 CNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDV 361
Query: 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 476
Q VN+++N+D P E YLHRIGR+GRFG G+ NL+ +D + +IE+
Sbjct: 362 QAVNVVINFDFPRM--------AETYLHRIGRSGRFGHLGIAINLITY-EDRFDLHRIEK 412
Query: 477 YFDIKVTEV 485
++ +
Sbjct: 413 ELGTEIKPI 421
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 140/410 (34%), Positives = 216/410 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 141
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 142 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 200
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEAD +L + D
Sbjct: 201 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQ-----D 255
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 256 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYY 313
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 314 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 422
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + N D+ A
Sbjct: 423 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 140/410 (34%), Positives = 216/410 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 141
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 142 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 200
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEAD +L + D
Sbjct: 201 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-----D 255
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 256 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYY 313
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 314 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 422
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + N D+ A
Sbjct: 423 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 140/410 (34%), Positives = 216/410 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 141
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 142 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 200
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEAD +L + D
Sbjct: 201 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-----D 255
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 256 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYY 313
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 314 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 422
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + N D+ A
Sbjct: 423 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 140/410 (34%), Positives = 216/410 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 141
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 142 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 200
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEAD +L + D
Sbjct: 201 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-----D 255
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 256 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYY 313
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 314 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 422
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + N D+ A
Sbjct: 423 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 140/410 (34%), Positives = 216/410 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 141
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 142 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 200
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEAD +L + D
Sbjct: 201 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-----D 255
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 256 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYY 313
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 314 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 422
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + N D+ A
Sbjct: 423 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 140/410 (34%), Positives = 216/410 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 141
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 142 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 200
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEAD +L + D
Sbjct: 201 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-----D 255
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 256 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYY 313
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 314 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 422
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + N D+ A
Sbjct: 423 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 140/410 (34%), Positives = 216/410 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 141
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 142 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 200
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEAD +L + D
Sbjct: 201 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-----D 255
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 256 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYY 313
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 314 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 422
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + N D+ A
Sbjct: 423 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 140/401 (34%), Positives = 217/401 (54%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+NG
Sbjct: 88 TSDVTATKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAKNG 144
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQA-LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTD 209
+GK+ +++ +L R+D + QA + I PTRELA+Q ++ ++ KH G A T
Sbjct: 145 TGKSGAYLIPLLERIDLKKDSIQAAVVIVPTRELALQVSQICIQVSKHMGGVKVMAT-TG 203
Query: 210 STNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDS 269
TN R T VVI TPG I + +++++V DEAD +L + D
Sbjct: 204 GTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADKLLSQ-----DF 258
Query: 270 LRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYKV 327
+++M++I S S Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 259 VQMMEEILSSLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYYA 316
Query: 328 YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQE 387
Y E KV + L ++ Q+IIF + L K + GY I QE
Sbjct: 317 YVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQE 373
Query: 388 ERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIG 447
R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P K G E YLHRIG
Sbjct: 374 HRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFP-KLG-------ETYLHRIG 425
Query: 448 RAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 488
R+GRFG G+ NL+ DD ++ IE ++ + +S
Sbjct: 426 RSGRFGHLGLAINLITY-DDRFNLKGIEEQLGTEIKPIPSS 465
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 135/424 (31%), Positives = 232/424 (54%)
Query: 65 GLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKP 124
G T ++K + + E + + ++ T+ + T TF+ + L +LL+G+Y F+KP
Sbjct: 9 GGTTGSARK--RIMKEEDMTKVEFETSEEVDVTP--TFDTMGLREDLLRGIYA-YGFEKP 63
Query: 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184
S IQ ++ I+ R++IAQ+++G+GKT F + +L +D ++ QAL + PTRELA
Sbjct: 64 SAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELA 121
Query: 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPV---TAQVVIGTPGTIKKWMSAK 241
+Q ++K+G + + + P A+ + G + + +
Sbjct: 122 VQ----IQKVGTSKSLPVKMKELHKAMGSFKQEVDLPAGHEVARCISGIQLQLLYMIRRR 177
Query: 242 KLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVT 301
L +K+LV DEAD ML++ GF++ + + + ++ QV+L SAT +
Sbjct: 178 SLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT---QVVLISATLPHEILEMTN 233
Query: 302 RIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKN 361
+ + D ++ VK++EL+LE +KQ+ V E K + D L + Q +IF TK
Sbjct: 234 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKR 291
Query: 362 SASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 421
L + +++ + V+++ G Q+ER+ I+KEF+ G ++VLISTDV ARG D QV+L
Sbjct: 292 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 351
Query: 422 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 481
I+NYD P E+Y+HRIGR+GR+GRKGV N + + DD+ I+ IE+Y+ +
Sbjct: 352 IINYDLPNNR--------ELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQ 402
Query: 482 VTEV 485
+ E+
Sbjct: 403 IDEM 406
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 133/364 (36%), Positives = 195/364 (53%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T TFED L ELL G++ E F+KPS IQ ++P+ +T R+++A+A+NG
Sbjct: 37 TDDVLNTKGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITG--RDILARAKNG 93
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT FV+ L +V P L QAL + PTRELA+Q +V+R +GKH GI+ C V T
Sbjct: 94 TGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGG 151
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
TN R T +++GTPG + S K S + + DEAD ML F+
Sbjct: 152 TNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR-DFKTIIE 210
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYKVYC 329
+I+ + + H Q LLFSATF TVK F+ + + K Y + EEL+L+ + QY +
Sbjct: 211 QILSFLPPT--H-QSLLFSATFPLTVKEFMVKHLHKPYEINLM--EELTLKGITQYYAFV 265
Query: 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 389
+E K+ + +L ++ Q IIF + N L K + D GY Q+ER
Sbjct: 266 -EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER 322
Query: 390 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 449
+K+ EF+ G + L+ +D+L RG D Q VN+++N+D P +L + R GR
Sbjct: 323 NKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR-----IGRSGRF 377
Query: 450 GRFG 453
G G
Sbjct: 378 GHLG 381
Score = 344 (126.2 bits), Expect = 5.2e-30, P = 5.2e-30
Identities = 94/283 (33%), Positives = 143/283 (50%)
Query: 204 CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA 263
C V T TN R T +++GTPG + S K S + + DEAD ML
Sbjct: 145 CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR- 203
Query: 264 GFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESV 322
F+ +I+ + + H Q LLFSATF TVK F+ + + K Y + EEL+L+ +
Sbjct: 204 DFKTIIEQILSFLPPT--H-QSLLFSATFPLTVKEFMVKHLHKPYEINLM--EELTLKGI 258
Query: 323 KQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG 382
QY + +E K+ + +L ++ Q IIF + N L K + D GY
Sbjct: 259 TQYYAFV-EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 315
Query: 383 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVY 442
Q+ER+K+ EF+ G + L+ +D+L RG D Q VN+++N+D P E Y
Sbjct: 316 RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFP--------KTAETY 367
Query: 443 LHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
LHRIGR+GRFG G+ NL+ + +D + KIE+ ++ +
Sbjct: 368 LHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAI 409
>TAIR|locus:2008296 [details] [associations]
symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
Uniprot:Q9C8J1
Length = 392
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 136/405 (33%), Positives = 221/405 (54%)
Query: 82 EDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYR 141
E++ + T G P S F+D+ ++ ++L+G+Y + ++KPS+IQ +L IL R
Sbjct: 7 EENLVFETTKGIKPIKS---FDDMGMNDKVLRGVY-DYGYKKPSEIQQRALVPILKG--R 60
Query: 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201
++IAQA++G+GKT+ + + V+ + + Q L + P+RELA Q + ++ +G HT I
Sbjct: 61 DVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQ 120
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
+ + S I K V GTPG + + L +K+LV DE+D ML
Sbjct: 121 AHACIGGKSIGE-DIKKLER-GVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLS 178
Query: 262 EAGFRDDSLRIMKDIERSSGH-CQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE 320
+ G +D + D+ R+ H QV L SAT + + + + D ++ VK +EL+LE
Sbjct: 179 K-GLKDQ----IYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLE 233
Query: 321 SVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTI 380
+KQY V E K + D L + Q IIF T+ L + ++ + V+++
Sbjct: 234 GIKQYYVDVDKEEWKFDTLCDLYGRL--TINQAIIFCNTRQKVDWLTEKMRSSNFIVSSM 291
Query: 381 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCE 440
G Q+ERD I+ +F+ ++VLI++DV ARG D Q V+ ++NYD P P E
Sbjct: 292 HGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNN------P--E 343
Query: 441 VYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
+Y+HRIGRAGRFGR+GV N + D M ++ IER++ K+ E+
Sbjct: 344 LYIHRIGRAGRFGREGVAINFVKSSD-MKDLKDIERHYGTKIREM 387
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 139/410 (33%), Positives = 216/410 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
+ T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 85 IKTSDVTSTKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 141
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ I PTRELA+Q ++ ++ KH G A T
Sbjct: 142 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-T 200
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R T VVI TPG I + ++++V DEA+ +L + D
Sbjct: 201 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANKLLSQ-----D 255
Query: 269 SLRIMKDIERS-SGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEELSLESVKQYK 326
++IM+DI + + Q+LL+SATF +V+ F+ + + K Y + EEL+L+ V QY
Sbjct: 256 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM--EELTLKGVTQYY 313
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I Q
Sbjct: 314 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQ 370
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P E YLHRI
Sbjct: 371 EHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKL--------AETYLHRI 422
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDEDFKAA 495
GR+GRFG G+ NL+ DD ++ IE ++ + N D+ A
Sbjct: 423 GRSGRFGHLGLAINLITY-DDRFNLKSIEEQLGTEIKPIPSNIDKSLYVA 471
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 137/439 (31%), Positives = 227/439 (51%)
Query: 50 ANTSEDKSTAELD-VEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLS 108
ANT+ S++ + ++ I + + K L+ +D KT D T FED L
Sbjct: 12 ANTNTLNSSSNYNKIDDNIILDEEWKKKILEPLKDLRYKTE---DVTKTKGNEFEDYFLK 68
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168
ELL G++ E ++KPS IQ S+P+ L +N++A+A+NG+GKT F + +L + + +
Sbjct: 69 RELLMGIF-EKGYEKPSPIQEESIPVALAG--KNILARAKNGTGKTAAFAIPLLEKCNTH 125
Query: 169 LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVI 228
Q L + PTRELA+Q +++++GKH + +C V T T+ R ++
Sbjct: 126 KNFIQGLILVPTRELALQTSAMIKELGKHMKV--QCMVTTGGTSLREDIMRLYNVVHILC 183
Query: 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLF 288
GTPG I + S I+V DEAD +L F+ +MK + + Q+L++
Sbjct: 184 GTPGRILDLANKDVANLSGCHIMVMDEADKLLSPE-FQPIVEELMKFLPKEK---QILMY 239
Query: 289 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 348
SATF TVK F + D +++ + +EL+L+ + QY + E KV + +L
Sbjct: 240 SATFPVTVKEFRAIYLSDAHEINLM-DELTLKGITQYYAFVK-ERQKVHCLNTLFAKL-- 295
Query: 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 408
++ Q IIF + L K + + GY I Q R+++ +F++G + L+S+D
Sbjct: 296 QINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSSD 355
Query: 409 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 468
+ RG D Q VN+++N+D P K+ E YLHRIGR+GR+G G+ NL+ +D
Sbjct: 356 LFTRGIDIQSVNVVINFDFP-KNS-------ETYLHRIGRSGRYGHLGLAINLITF-EDR 406
Query: 469 IIMEKIERYFDIKVTEVRN 487
+ KIE ++ + N
Sbjct: 407 FNLYKIEVELGTEIQPIPN 425
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 137/407 (33%), Positives = 218/407 (53%)
Query: 64 EGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQK 123
EG D +++ ++ L+E + + T+ D + S F+ + L LL+G+Y F+K
Sbjct: 7 EGTQFD-ARQFDQKLNEVLEGQDEFFTSYDDVHES---FDAMGLQENLLRGIYA-YGFEK 61
Query: 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183
PS IQ + ++I QA++G+GKT F G+L ++D +L QAL + PTREL
Sbjct: 62 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTREL 119
Query: 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243
A Q +V+R +G + G+ V T+ + VV+GTPG + + + L
Sbjct: 120 AQQIEKVMRALGDYLGVKVHACV--GGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSL 177
Query: 244 GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 303
+K+ V DEAD ML GF+D I + + QV +FSAT +
Sbjct: 178 RADNIKMFVLDEADEMLSR-GFKDQIYDIFQLLPPK---IQVGVFSATMPPEALEITRKF 233
Query: 304 VKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSA 363
+ ++ VK++EL+LE +KQ+ V E K+ + D ++E + Q++IFV T+
Sbjct: 234 MSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCD-LYET-LAITQSVIFVNTRRKV 291
Query: 364 SALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIV 423
L ++ + V+ G Q RD I++EF+ G ++VLI+TD+LARG D QQV+L++
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 424 NYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 470
N+D P +P E YLHRIGR+GRFGRKGV N + D+ ++
Sbjct: 352 NFDLPT------QP--ENYLHRIGRSGRFGRKGVAINFVTRDDERML 390
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 138/405 (34%), Positives = 217/405 (53%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED L +LLKG+Y E F+KPS IQ S+P+ LT +++A+A+NG
Sbjct: 115 TADVTATKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNG 171
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F + +L ++DPN QA+ + PTRELA+Q +V +++ K+ I + V T
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNI--QVMVTTGG 229
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHMLDEAGFRD 267
T+ R +++GTPG I + K G LK +LV DEAD +L A F+
Sbjct: 230 TSLRDDIMRLHQPVHLLVGTPGRI---LDLTKKGVCVLKDCAMLVMDEADKLLS-AEFQP 285
Query: 268 DSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYK 326
+++ + ++ Q L+FSATF TVK F R + K Y + ++L+L V QY
Sbjct: 286 SLEELIQFLPQNR---QFLMFSATFPVTVKAFKDRHLRKPY--VINLMDQLTLMGVTQYY 340
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
+ +E KV + +L ++ Q+IIF + N L K + + GY I +Q
Sbjct: 341 AFV-EERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQ 397
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
+ R+++ EF++G + L+ TD+ RG D Q VN+++N+D P E YLHR+
Sbjct: 398 DHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------RTSESYLHRV 449
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV-RNSDE 490
GR+GRFG G+ NL+ +D M + E+ ++ + N D+
Sbjct: 450 GRSGRFGHLGLAVNLVTY-EDRFKMYQTEQELGTEIKPIPSNIDQ 493
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 124/395 (31%), Positives = 211/395 (53%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T F+DL+L +LL+G++ E + KPS IQ ++P+ L R+++A+A+NG
Sbjct: 40 TEDVTATEGNDFDDLHLKRDLLRGIF-EKGYVKPSPIQEKAIPIALAG--RDIMARAKNG 96
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F++ L + DP Q L + PTRELA+Q +V +++GK+ + + T
Sbjct: 97 TGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNV--QVMASTGG 154
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
T+ R +++ TPG + S ++ DEAD +L + F+
Sbjct: 155 TSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQE-FQPLVE 213
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
+++ + + Q+LLFSATF TVK+F ++ ++ + EEL+L+ V QY +
Sbjct: 214 QLINFLPQQR---QILLFSATFPVTVKSFKEHYLQQAFEINLM-EELTLKGVTQYYAFV- 268
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
+E K+ + +L ++ Q+IIF + N L K + + GY I +Q R+
Sbjct: 269 EERQKIHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRN 326
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
++ +F++G + L+S+D+ RG D Q VN+++N+D P KH E YLHRIGR+G
Sbjct: 327 RVFHDFRNGACRNLVSSDLFTRGIDIQDVNVVINFDFP-KHS-------ETYLHRIGRSG 378
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
RFG G+ NL+ +D + KIE+ ++ +
Sbjct: 379 RFGHLGLAINLITY-EDRFSLYKIEQELGTEIKPI 412
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 131/385 (34%), Positives = 217/385 (56%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+ + L +LL+G+Y F+KPS IQ ++ I+ R++IAQ+++G+GKT F +
Sbjct: 40 TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSIS 96
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+L +D ++ QAL + PTRELA+Q ++K TG E VP V ++
Sbjct: 97 VLQCLDIQVRETQALILAPTRELAVQ----IQKSLLATG---EVPVPPPVKCTVSSWEQC 149
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
+ + + + + + L +K+LV DEAD ML++ GF++ + + + ++
Sbjct: 150 RLACFLSLFILQSEIDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPAT 208
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
QV+L SAT + + + D ++ VK++EL+LE +KQ+ V E K +
Sbjct: 209 ---QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC 265
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
D L + Q +IF TK L + +++ + V+++ G Q+ER+ I+KEF+ G
Sbjct: 266 DLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 323
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
++VLISTDV ARG D QV+LI+NYD P E+Y+HRIGR+GR+GRKGV N
Sbjct: 324 SRVLISTDVWARGLDVPQVSLIINYDLPNNR--------ELYIHRIGRSGRYGRKGVAIN 375
Query: 461 LLMDGDDMIIMEKIERYFDIKVTEV 485
+ + DD+ I+ IE+Y+ ++ E+
Sbjct: 376 FVKN-DDIRILRDIEQYYSTQIDEM 399
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 125/393 (31%), Positives = 209/393 (53%)
Query: 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGK 153
+P SA TF DL + P +L+ + ++ ++ P+ IQA ++P ++ +++ A+ G+GK
Sbjct: 7 SPAASAATFADLQIHPRVLRAIG-DVGYESPTAIQAATIPALMAGS--DVVGLAQTGTGK 63
Query: 154 TTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213
T F + MLS++D K PQAL + PTRELA+Q E + G + + + S+
Sbjct: 64 TAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYA 123
Query: 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIM 273
V ++ AQVV+GTPG + + L SR+ LV DEAD ML GF DD RI+
Sbjct: 124 VQLAGLRR-GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLT-MGFADDVERIL 181
Query: 274 KDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 333
+ + QV LFSAT ++ + + D ++ K + E++ Q + ++
Sbjct: 182 SETPE---YKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI----QV 234
Query: 334 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 393
A+ M R+ E+ E I+FVRTK + + + L+ G+ I G Q +R++ +
Sbjct: 235 ARKMDALTRVLEV-EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTI 293
Query: 394 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 453
+DG +L++TDV ARG D ++++ ++NYD P H D E Y+HRIGR GR G
Sbjct: 294 TALRDGDIDILVATDVAARGLDVERISHVLNYDIP--H------DTESYVHRIGRTGRAG 345
Query: 454 RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486
R G + + ++ +++ IE+ +TE +
Sbjct: 346 RSGAAL-IFVSPRELHLLKAIEKATRQTLTEAQ 377
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 133/398 (33%), Positives = 211/398 (53%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED L +LL+G+Y E F+KPS IQ S+P+ LT +++A+A+NG
Sbjct: 145 TEDVTATKGNEFEDYFLKRDLLRGIY-EKGFEKPSPIQEESIPIALTGS--DILARAKNG 201
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F + L ++DP QA+ + PTRELA+Q +V +++ K+ I E V T
Sbjct: 202 TGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKI--EVMVTTGG 259
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK---ILVYDEADHMLDEAGFRD 267
T+ R +++GTPG I + K G LK +LV DEAD +L F+
Sbjct: 260 TSLRDDIMRLYQPVHLLVGTPGRI---LDLAKKGVCVLKDCAMLVMDEADKLLS-VEFQP 315
Query: 268 DSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKV 327
+++ + S Q+L+FSATF TVK+F R +K + ++L+L V QY
Sbjct: 316 SIEELIQFLPESR---QILMFSATFPVTVKSFKDRYLKK-PYIINLMDQLTLMGVTQYYA 371
Query: 328 YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQE 387
+ +E KV + +L ++ Q+IIF + N L K + + GY I +Q+
Sbjct: 372 FV-EERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQD 428
Query: 388 ERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIG 447
R+++ +F++G + L+ TD+ RG D Q VN+++N+D P E YLHR+G
Sbjct: 429 HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------RTSESYLHRVG 480
Query: 448 RAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
R+GRFG G+ NL+ +D M + E+ ++ +
Sbjct: 481 RSGRFGHLGLAVNLVTY-EDRFKMYQTEQELGTEIKPI 517
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 134/397 (33%), Positives = 210/397 (52%)
Query: 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQAR 148
V T D T FED L ELL G++ EM ++KPS IQ S+P+ L+ R+++A+A+
Sbjct: 77 VRTTDVTATKGNEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSG--RDILARAK 133
Query: 149 NGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
NG+GK+ +++ +L R+D QA+ + PTRELA+Q ++ M KH G A T
Sbjct: 134 NGTGKSGAYLIPLLERIDLKKDYIQAIVLVPTRELALQVSQISINMSKHLGGIKVMAT-T 192
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
TN R V+I TPG I + ++++ V DEAD +L + D
Sbjct: 193 GGTNLRDDIMRLDEIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLLSQ-----D 247
Query: 269 SLRIMKDI-ERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYK 326
+ +++DI Q+LL+SATF +V+ F+T+ + K Y + +EL+L+ + QY
Sbjct: 248 FVVLIEDIISFLPKKRQILLYSATFPISVQKFMTKHLQKPYEINLM--DELTLKGITQYY 305
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
Y E KV + L ++ Q+IIF + L K + GY I +Q
Sbjct: 306 AYVT-ERQKVHCLNTLFSRL--QINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQ 362
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
E R+++ +F++GL + L+ TD+ RG D Q VN+++N+D P + E YLHRI
Sbjct: 363 EYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFP--------KNAETYLHRI 414
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYF--DIK 481
GR+GR+G G+ NL+ +D ++ IE DIK
Sbjct: 415 GRSGRYGHLGLAINLITS-EDRFNLKGIEDQLMTDIK 450
>POMBASE|SPAC17G6.14c [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase Uap56"
species:4896 "Schizosaccharomyces pombe" [GO:0000346 "transcription
export complex" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006406 "mRNA export from nucleus" evidence=ISO] [GO:0008380
"RNA splicing" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC17G6.14c GO:GO:0005524 EMBL:CU329670
GO:GO:0008380 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:D89270 PIR:T37846 PIR:T43199
RefSeq:NP_594261.1 ProteinModelPortal:O13792 SMR:O13792
STRING:O13792 EnsemblFungi:SPAC17G6.14c.1 GeneID:2542433
KEGG:spo:SPAC17G6.14c OMA:DAVEFNQ NextBio:20803490 Uniprot:O13792
Length = 434
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 133/443 (30%), Positives = 224/443 (50%)
Query: 50 ANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSP 109
A+ ED E + E + ++++ D AE+ K+ G +T F D L P
Sbjct: 2 ASAQEDLIDYEEEEELVQDQPAQEITPAADTAENGE-KSDKKGSYVGIHSTGFRDFLLKP 60
Query: 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL 169
ELL+ + + F+ PS++Q + +P + +++ QA++G GKT FVL L +++P
Sbjct: 61 ELLRAI-TDSGFEHPSEVQQVCIPQSILGT--DVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 170 KAPQALCICPTRELAIQNLEVLRKMGKH-----TGIT-SECAVPTDSTNYVPISKRPPVT 223
L +C TRELA Q + K+ T + + D + SK P
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSP--- 174
Query: 224 AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHC 283
+V+ TPG + + K L + +K V DE D +L+ R D I + +
Sbjct: 175 -HIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRD---IQEVFRATPPQK 230
Query: 284 QVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDR 342
QV++FSAT + ++ + +++ +++V E +L+L ++Q+ V +E AK I D
Sbjct: 231 QVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKL-EEKAKNRKINDL 289
Query: 343 IFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 402
+ L + Q +IFV++ + A+ L + L++ + I G QEER K K FKD +
Sbjct: 290 LDSL--EFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKR 347
Query: 403 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 462
+ ++TDV RG D ++VN+++NYD P PD YLHR+GRAGRFG KG+
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDS------PDS--YLHRVGRAGRFGTKGLAITFS 399
Query: 463 MDGDDMIIMEKIERYFDIKVTEV 485
+D I++KI+ F++ +TE+
Sbjct: 400 SSEEDSQILDKIQERFEVNITEL 422
>UNIPROTKB|E7EQG2 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2
IPI:IPI00924536 ProteinModelPortal:E7EQG2 SMR:E7EQG2 PRIDE:E7EQG2
Ensembl:ENST00000425053 ArrayExpress:E7EQG2 Bgee:E7EQG2
Uniprot:E7EQG2
Length = 362
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 120/336 (35%), Positives = 191/336 (56%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISL-PMILTPPYRNLIAQARNGSGKTTCFVLG 160
F+D+NL LL+G+Y F+KPS IQ ++ P I Y ++IAQA++G+GKT F +
Sbjct: 35 FDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCI--KGY-DVIAQAQSGTGKTATFAIS 90
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKR 219
+L +++ K QAL + PTRELA Q +V+ +G + G T C T+ N + K
Sbjct: 91 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN--EMQKL 148
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
+V+GTPG + ++ + L +K+ V DEAD ML GF+D I + + S
Sbjct: 149 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS 207
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV+L SAT V + ++D ++ VKKEEL+LE +KQ+ + E K+ +
Sbjct: 208 ---IQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTL 264
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+ G
Sbjct: 265 CD-LYET-LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHL 435
++VLI+TD+LARG D QQV+L++NYD P ++
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYI 358
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 125/376 (33%), Positives = 202/376 (53%)
Query: 83 DSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRN 142
D +TVT + A F L L PE L + + F + IQA+++P +L ++
Sbjct: 3 DQKTETVTEPE-----AVAFASLGL-PENLLSAVLSIGFTSATDIQALTIPPLLAG--KD 54
Query: 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GIT 201
++ +A+ G+GKT F L L+++D ++K PQ + + PTRELA+Q E + GK G+
Sbjct: 55 VLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGL- 113
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
A +Y P ++ AQVV+GTPG + + K L L++ V DEAD ML+
Sbjct: 114 -RVATLYGGQSYGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLN 172
Query: 262 EAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES 321
GF +D I+ I +++ C LFSAT ++ R +KD + V + + +
Sbjct: 173 -MGFLEDIQWILDHIPKTAQMC---LFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKAN 228
Query: 322 VKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIM 381
+ QY + + K+ + +RI E+ E IIFVRT+N + + L+ GY +
Sbjct: 229 ITQY-AWKVSGITKMTAL-ERIAEVVE-YDAMIIFVRTRNDTVDIAEKLERAGYPALALN 285
Query: 382 GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEV 441
G Q +R++ + + K G + +L++TDV+ARG D +++L++NYD P G D E
Sbjct: 286 GDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLP---G-----DNEA 337
Query: 442 YLHRIGRAGRFGRKGV 457
Y+HRIGR GR GR+G+
Sbjct: 338 YVHRIGRTGRAGREGM 353
>SGD|S000002242 [details] [associations]
symbol:SUB2 "Component of the TREX complex required for
nuclear mRNA export" species:4932 "Saccharomyces cerevisiae"
[GO:0006406 "mRNA export from nucleus" evidence=IMP;IDA;IPI]
[GO:0000346 "transcription export complex" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA;TAS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IGI;ISA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IPI] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002242 GO:GO:0005524
EMBL:BK006938 GO:GO:0005681 GO:GO:0003723 GO:GO:0006348
GO:GO:0006368 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000781 GO:GO:0004004
GO:GO:0006283 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0031124
GeneTree:ENSGT00660000095549 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:Z74132 EMBL:AY692907 PIR:S67620
RefSeq:NP_010199.1 ProteinModelPortal:Q07478 SMR:Q07478
DIP:DIP-5343N IntAct:Q07478 MINT:MINT-526164 STRING:Q07478
PaxDb:Q07478 PeptideAtlas:Q07478 EnsemblFungi:YDL084W GeneID:851475
KEGG:sce:YDL084W CYGD:YDL084w OMA:NNPLINC NextBio:968777
Genevestigator:Q07478 GermOnline:YDL084W Uniprot:Q07478
Length = 446
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 127/432 (29%), Positives = 211/432 (48%)
Query: 60 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTP--YTS--ATTFEDLNLSPELLKGL 115
E+ ++ E+ + E + GD Y +T F+D L PEL + +
Sbjct: 18 EIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIHSTGFKDFLLKPELSRAI 77
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175
++ F+ PS++Q ++P + +++ QA++G GKT FVL L ++DP +
Sbjct: 78 -IDCGFEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVV 134
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAV--PTDSTNYVPISKRPPVTAQVVIGTPGT 233
IC RELA Q + K+ T + + K +V+ TPG
Sbjct: 135 VICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGR 194
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293
+K + K + S +K V DE D +L+E R D I + R QV++FSAT +
Sbjct: 195 LKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRDK---QVMMFSATLS 251
Query: 294 ETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQ 352
+ ++ R +++ ++FV E +L+L ++QY + +E K + + +L + Q
Sbjct: 252 QEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKL-EEREKNRKLAQLLDDL--EFNQ 308
Query: 353 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412
IIFV++ A+ L K L + T+ G QEER K FKD ++ +STDV R
Sbjct: 309 VIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGR 368
Query: 413 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472
G D +++NL +NYD L + + YLHR+GRAGRFG KG+ + + +D ++
Sbjct: 369 GIDIERINLAINYD--------LTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLA 420
Query: 473 KIERYFDIKVTE 484
KI+ FD+K+ E
Sbjct: 421 KIQERFDVKIAE 432
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 126/364 (34%), Positives = 193/364 (53%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T +FED NL ELL G++ E F+KPS IQ S+PM L R+++A+A+NG
Sbjct: 21 TEDVLNTKGKSFEDFNLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDILARAKNG 77
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F++ L V P L QAL + PTRELA+Q +V+R +GKH G ++C V T
Sbjct: 78 TGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVG--TQCMVTTGG 135
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
T+ R +++GTPG + + K + S + V DEAD ML R+
Sbjct: 136 TSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLS----REFKG 191
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYKVYC 329
I + +E + Q LLFSATF VK+F+ + + K Y + +EL+L+ + Q+ +
Sbjct: 192 IIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM--DELTLKGISQFYAFV 249
Query: 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 389
+E K+ + +L ++ Q+IIF + N L K + + GY Q+ R
Sbjct: 250 -EEKQKLHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQAR 306
Query: 390 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 449
+K+ EF+ G + L+ +D+L RG D Q VN+++N+D P +L + R GR
Sbjct: 307 NKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR-----IGRSGRF 361
Query: 450 GRFG 453
G G
Sbjct: 362 GHLG 365
Score = 318 (117.0 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 88/287 (30%), Positives = 144/287 (50%)
Query: 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259
+ ++C V T T+ R +++GTPG + + K + S + V DEAD M
Sbjct: 125 VGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKM 184
Query: 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELS 318
L R+ I + +E + Q LLFSATF VK+F+ + + K Y + +EL+
Sbjct: 185 LS----REFKGIIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM--DELT 238
Query: 319 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 378
L+ + Q+ + +E K+ + +L ++ Q+IIF + N L K + + GY
Sbjct: 239 LKGISQFYAFV-EEKQKLHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCY 295
Query: 379 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 438
Q+ R+K+ EF+ G + L+ +D+L RG D Q VN+++N+D P
Sbjct: 296 YSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFP--------KT 347
Query: 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E YLHRIGR+GRFG G+ NL M +D + KIE+ ++ +
Sbjct: 348 AETYLHRIGRSGRFGHLGLAINL-MSWNDRYSLYKIEQELGTEIKPI 393
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 126/364 (34%), Positives = 193/364 (53%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T +FED NL ELL G++ E F+KPS IQ S+PM L R+++A+A+NG
Sbjct: 21 TEDVLNTKGKSFEDFNLKRELLMGIF-EAGFEKPSPIQEESIPMALAG--RDILARAKNG 77
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT F++ L V P L QAL + PTRELA+Q +V+R +GKH G ++C V T
Sbjct: 78 TGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVG--TQCMVTTGG 135
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
T+ R +++GTPG + + K + S + V DEAD ML R+
Sbjct: 136 TSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLS----REFKG 191
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYKVYC 329
I + +E + Q LLFSATF VK+F+ + + K Y + +EL+L+ + Q+ +
Sbjct: 192 IIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM--DELTLKGISQFYAFV 249
Query: 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 389
+E K+ + +L ++ Q+IIF + N L K + + GY Q+ R
Sbjct: 250 -EEKQKLHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQAR 306
Query: 390 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 449
+K+ EF+ G + L+ +D+L RG D Q VN+++N+D P +L + R GR
Sbjct: 307 NKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR-----IGRSGRF 361
Query: 450 GRFG 453
G G
Sbjct: 362 GHLG 365
Score = 318 (117.0 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 88/287 (30%), Positives = 144/287 (50%)
Query: 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259
+ ++C V T T+ R +++GTPG + + K + S + V DEAD M
Sbjct: 125 VGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKM 184
Query: 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELS 318
L R+ I + +E + Q LLFSATF VK+F+ + + K Y + +EL+
Sbjct: 185 LS----REFKGIIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM--DELT 238
Query: 319 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 378
L+ + Q+ + +E K+ + +L ++ Q+IIF + N L K + + GY
Sbjct: 239 LKGISQFYAFV-EEKQKLHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCY 295
Query: 379 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 438
Q+ R+K+ EF+ G + L+ +D+L RG D Q VN+++N+D P
Sbjct: 296 YSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFP--------KT 347
Query: 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
E YLHRIGR+GRFG G+ NL M +D + KIE+ ++ +
Sbjct: 348 AETYLHRIGRSGRFGHLGLAINL-MSWNDRYSLYKIEQELGTEIKPI 393
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 128/378 (33%), Positives = 204/378 (53%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG I ++ K L ++ +V DEAD ML+ GF +D I+ D+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAILTDVPE 174
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ H Q LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K
Sbjct: 175 T--H-QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFD 229
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+
Sbjct: 230 VLTRLLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIA 340
Query: 459 FNLLMDGDDMIIMEKIER 476
L + + ++ IER
Sbjct: 341 M-LFVTPRESGQLKNIER 357
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 128/378 (33%), Positives = 204/378 (53%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG I ++ K L ++ +V DEAD ML+ GF +D I+ D+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAILTDVPE 174
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ H Q LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K
Sbjct: 175 T--H-QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFD 229
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+
Sbjct: 230 VLTRLLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIA 340
Query: 459 FNLLMDGDDMIIMEKIER 476
L + + ++ IER
Sbjct: 341 M-LFVTPRESGQLKNIER 357
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 128/378 (33%), Positives = 204/378 (53%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG I ++ K L ++ +V DEAD ML+ GF +D I+ D+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAILTDVPE 174
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ H Q LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K
Sbjct: 175 T--H-QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFD 229
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+
Sbjct: 230 VLTRLLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIA 340
Query: 459 FNLLMDGDDMIIMEKIER 476
L + + ++ IER
Sbjct: 341 M-LFVTPRESGQLKNIER 357
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 128/378 (33%), Positives = 204/378 (53%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG I ++ K L ++ +V DEAD ML+ GF +D I+ D+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAILTDVPE 174
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ H Q LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K
Sbjct: 175 T--H-QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFD 229
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+
Sbjct: 230 VLTRLLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIA 340
Query: 459 FNLLMDGDDMIIMEKIER 476
L + + ++ IER
Sbjct: 341 M-LFVTPRESGQLKNIER 357
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 128/378 (33%), Positives = 204/378 (53%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG I ++ K L ++ +V DEAD ML+ GF +D I+ D+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAILTDVPE 174
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ H Q LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K
Sbjct: 175 T--H-QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFD 229
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+
Sbjct: 230 VLTRLLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIA 340
Query: 459 FNLLMDGDDMIIMEKIER 476
L + + ++ IER
Sbjct: 341 M-LFVTPRESGQLKNIER 357
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 128/378 (33%), Positives = 204/378 (53%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG I ++ K L ++ +V DEAD ML+ GF +D I+ D+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAILTDVPE 174
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ H Q LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K
Sbjct: 175 T--H-QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFD 229
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+
Sbjct: 230 VLTRLLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIA 340
Query: 459 FNLLMDGDDMIIMEKIER 476
L + + ++ IER
Sbjct: 341 M-LFVTPRESGQLKNIER 357
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 128/378 (33%), Positives = 204/378 (53%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF +L LS LL+ + M F++ + IQA ++P L +++I QA+ G+GKT F L
Sbjct: 2 TTFRELGLSDSLLQSVE-SMGFEEATPIQAETIPHALQG--KDIIGQAQTGTGKTAAFGL 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISK 218
+L +VD + ++ Q + I PTRELAIQ E L K+GKH + D + K
Sbjct: 59 PLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG I ++ K L ++ +V DEAD ML+ GF +D I+ D+
Sbjct: 119 KHP---HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAILTDVPE 174
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ H Q LLFSAT + ++ R + + + VK +E+++ +++Q+ Y + K
Sbjct: 175 T--H-QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQF--YLEVQEKKKFD 229
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK+
Sbjct: 230 VLTRLLDI-QSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKE 288
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+KG+
Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKKGIA 340
Query: 459 FNLLMDGDDMIIMEKIER 476
L + + ++ IER
Sbjct: 341 M-LFVTPRESGQLKNIER 357
>GENEDB_PFALCIPARUM|PF14_0563 [details] [associations]
symbol:PF14_0563 "DEAD-box RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 KO:K01509 RefSeq:XP_001348737.1
ProteinModelPortal:Q8IKP1 PRIDE:Q8IKP1
EnsemblProtists:PF14_0563:mRNA GeneID:812145 KEGG:pfa:PF14_0563
EuPathDB:PlasmoDB:PF3D7_1459000 HOGENOM:HOG000281979 OMA:DKKQPDD
ProtClustDB:CLSZ2501093 Uniprot:Q8IKP1
Length = 741
Score = 482 (174.7 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 120/352 (34%), Positives = 198/352 (56%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
Y S T+E+L + EL++ + +KF PSKIQA +LP+IL+ +NLIAQ++NGSGKT
Sbjct: 321 YHSKNTWEELKIDNELIQ-ILTYLKFLGPSKIQAYALPIILSSN-KNLIAQSQNGSGKTL 378
Query: 156 CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP 215
FV+ ML +++ L + QA+CICPTREL+ QN +V+ K+ + AVP Y
Sbjct: 379 TFVIAMLCKINRTLSSLQAVCICPTRELSQQNYDVVCNFTKYLNVKVFLAVPL-CERY-- 435
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275
+K Q+ +GTPG ++ K + +K+ V DEAD ++D + +K
Sbjct: 436 -NKSGGY--QIYVGTPGKTLDFLKRKFIDTKNIKLFVLDEADDLIDIKNNMSSQVETIKR 492
Query: 276 -IERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 334
+ RS CQ+LLFSAT+N++V+ F + ++ V++E+L+L+ VKQY + ++
Sbjct: 493 FLPRS---CQILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQ 549
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI--------- 385
K + + + + Q +IFV +K SA L+ + + + VT I +I
Sbjct: 550 KYYYLSELYCSM--TISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSIISRFTKNQI 607
Query: 386 ---------QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428
+ RD ++ +FK G+++VLI TD+L+RG D ++L++N+D P
Sbjct: 608 QKANVLGMDPKTRDTLMADFKKGISKVLICTDLLSRGIDVPSISLVINFDLP 659
Score = 187 (70.9 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 312 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS-------AS 364
VK+ L E+ +Q Y + + + + IF +K + T+NS A
Sbjct: 537 VKQYYLITENDEQKYYYLSELYCSMTISQCVIFVNSKKSAYNLYNFMTENSHNVTLICAD 596
Query: 365 ALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN 424
++ + ++G + RD ++ +FK G+++VLI TD+L+RG D ++L++N
Sbjct: 597 SIISRFTKNQIQKANVLGMD-PKTRDTLMADFKKGISKVLICTDLLSRGIDVPSISLVIN 655
Query: 425 YDPP-VKHGK---------HLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI 474
+D P + G+ + + E Y+HRIGR GRFG KG+ N + + M +++I
Sbjct: 656 FDLPYIYQGRIGDTLNNTSNQRVNMETYIHRIGRTGRFGTKGMAINFISK-NQMSHIKQI 714
Query: 475 ERYFDIKVTEVRNSDE 490
E Y+ + ++ E
Sbjct: 715 EEYYKCSIADLEFDSE 730
>UNIPROTKB|Q8IKP1 [details] [associations]
symbol:PF14_0563 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 KO:K01509 RefSeq:XP_001348737.1
ProteinModelPortal:Q8IKP1 PRIDE:Q8IKP1
EnsemblProtists:PF14_0563:mRNA GeneID:812145 KEGG:pfa:PF14_0563
EuPathDB:PlasmoDB:PF3D7_1459000 HOGENOM:HOG000281979 OMA:DKKQPDD
ProtClustDB:CLSZ2501093 Uniprot:Q8IKP1
Length = 741
Score = 482 (174.7 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 120/352 (34%), Positives = 198/352 (56%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
Y S T+E+L + EL++ + +KF PSKIQA +LP+IL+ +NLIAQ++NGSGKT
Sbjct: 321 YHSKNTWEELKIDNELIQ-ILTYLKFLGPSKIQAYALPIILSSN-KNLIAQSQNGSGKTL 378
Query: 156 CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP 215
FV+ ML +++ L + QA+CICPTREL+ QN +V+ K+ + AVP Y
Sbjct: 379 TFVIAMLCKINRTLSSLQAVCICPTRELSQQNYDVVCNFTKYLNVKVFLAVPL-CERY-- 435
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275
+K Q+ +GTPG ++ K + +K+ V DEAD ++D + +K
Sbjct: 436 -NKSGGY--QIYVGTPGKTLDFLKRKFIDTKNIKLFVLDEADDLIDIKNNMSSQVETIKR 492
Query: 276 -IERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 334
+ RS CQ+LLFSAT+N++V+ F + ++ V++E+L+L+ VKQY + ++
Sbjct: 493 FLPRS---CQILLFSATYNDSVRKFADQFAPKATKISVRQEDLTLKCVKQYYLITENDEQ 549
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI--------- 385
K + + + + Q +IFV +K SA L+ + + + VT I +I
Sbjct: 550 KYYYLSELYCSM--TISQCVIFVNSKKSAYNLYNFMTENSHNVTLICADSIISRFTKNQI 607
Query: 386 ---------QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428
+ RD ++ +FK G+++VLI TD+L+RG D ++L++N+D P
Sbjct: 608 QKANVLGMDPKTRDTLMADFKKGISKVLICTDLLSRGIDVPSISLVINFDLP 659
Score = 187 (70.9 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 312 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS-------AS 364
VK+ L E+ +Q Y + + + + IF +K + T+NS A
Sbjct: 537 VKQYYLITENDEQKYYYLSELYCSMTISQCVIFVNSKKSAYNLYNFMTENSHNVTLICAD 596
Query: 365 ALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN 424
++ + ++G + RD ++ +FK G+++VLI TD+L+RG D ++L++N
Sbjct: 597 SIISRFTKNQIQKANVLGMD-PKTRDTLMADFKKGISKVLICTDLLSRGIDVPSISLVIN 655
Query: 425 YDPP-VKHGK---------HLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI 474
+D P + G+ + + E Y+HRIGR GRFG KG+ N + + M +++I
Sbjct: 656 FDLPYIYQGRIGDTLNNTSNQRVNMETYIHRIGRTGRFGTKGMAINFISK-NQMSHIKQI 714
Query: 475 ERYFDIKVTEVRNSDE 490
E Y+ + ++ E
Sbjct: 715 EEYYKCSIADLEFDSE 730
>UNIPROTKB|A4RBS3 [details] [associations]
symbol:SUB2 "ATP-dependent RNA helicase SUB2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000230 EMBL:CM001237 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12812
RefSeq:XP_003720935.1 ProteinModelPortal:A4RBS3 SMR:A4RBS3
STRING:A4RBS3 PRIDE:A4RBS3 EnsemblFungi:MGG_02806T0 GeneID:2682359
KEGG:mgr:MGG_02806 OrthoDB:EOG4H49C6 Uniprot:A4RBS3
Length = 436
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 121/389 (31%), Positives = 202/389 (51%)
Query: 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV 158
+T F D L PELL+ + + F+ PS++Q +P + ++I QA++G GKT FV
Sbjct: 51 STGFRDFLLKPELLRAIG-DCGFEHPSEVQQTCIPQAMLGG--DIICQAKSGLGKTAVFV 107
Query: 159 LGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GI-TSECAVPTDSTNYVPI 216
L L +V+P L +C TRELA Q + K+ I T T +
Sbjct: 108 LTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAEL 167
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
K +++GTPG + + K L S ++I V DE D MLD+ R D I +
Sbjct: 168 LKNKETHPHIIVGTPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRAT 227
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAK 335
+ QV++FSAT ++ +K + +++ + +V ++ +L+L ++QY V +E K
Sbjct: 228 PQQK---QVMMFSATLSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVAL-EEKEK 283
Query: 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395
+ + + +L + Q IIFV++ A+ L K L++ + + QEER + KE
Sbjct: 284 NRKLNELLDDL--QFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKE 341
Query: 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 455
FK+ ++ ++TDV RG D +++NL +NYD P D + YLHR+GRAGRFG K
Sbjct: 342 FKEFNKRICVATDVFGRGIDIERINLAINYDMPA--------DADSYLHRVGRAGRFGTK 393
Query: 456 GVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
G+ + + + D ++ IE+ F++ + E
Sbjct: 394 GLAVSFVTNDQDKEVLTAIEKRFEVPIPE 422
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 127/388 (32%), Positives = 204/388 (52%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF +L LS LL+ L E+ ++KP+ IQ+ S+ ++ ++++ QA+ G+GKT F L
Sbjct: 7 TFRELGLSENLLRALD-ELGYEKPTPIQSASIDPLMAG--KDILGQAQTGTGKTGAFALP 63
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--K 218
+L++V PQ L + PTRELA+Q E K + + ++ K
Sbjct: 64 LLNKVTSQT-TPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALK 122
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
R P QV++GTPG + M L L+ LV DEAD ML + GF DD I+ E
Sbjct: 123 RGP---QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEML-KMGFIDDIEWIL---EH 175
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ Q+ LFSAT E +K + +K+ + + +++S++Q V +
Sbjct: 176 TPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEAL 235
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+R + E+ G IIFVRT+NS L + L+ GY + + G Q+ R++ V++ K+
Sbjct: 236 VR--VLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKN 292
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +LI+TDV ARG D +++ +VNYD P D E Y+HRIGR GR GR G+
Sbjct: 293 GKLDILIATDVAARGLDVERIGHVVNYDIPY--------DTEAYVHRIGRTGRAGRTGMA 344
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEVR 486
L + +M ++ IER + +++ ++
Sbjct: 345 I-LFVTSREMRMLRTIERATNSRISPMK 371
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 120/436 (27%), Positives = 223/436 (51%)
Query: 56 KSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATT-FEDLNLSPELLKG 114
++ E+D+ L E + + ++ D+ KT DT ++ F + L PEL +
Sbjct: 3 ETNPEVDISELAEYEEESDEEVQNDVTDTKNKTANRADTHVAMHSSGFREFLLKPELER- 61
Query: 115 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQA 174
+ + F+ PS++Q +P + ++I QA++G GKT FVL L ++D N
Sbjct: 62 VIGDCGFEHPSEVQNECIPQAILGT--DVICQAKSGMGKTAVFVLSTLQQIDNNPNGITT 119
Query: 175 LCICPTRELAIQNLEVLRKMGKHTGITSECAV----PTDSTNYVPISKRPPVTAQVVIGT 230
L +C TRELA Q + + K+ + P + + K+P ++IGT
Sbjct: 120 LVLCNTRELAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHKDLIKEKKP----NIIIGT 175
Query: 231 PGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSA 290
PG I + S L +K + DE D ML+ R D +I K I + QV++FSA
Sbjct: 176 PGRILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANK---QVMMFSA 232
Query: 291 TFNETVKNFVTRIVKDYNQLFVKK-EELSLESVKQYKVYCPDELAKVMVIRDRIFELGEK 349
T ++T++ + + + ++++ +L+L ++QY V +E +I + + L
Sbjct: 233 TLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLI-ELLDSLD-- 289
Query: 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409
Q +IFV++ A AL+K L+D G+ I Q++R + ++FK+ ++++++T++
Sbjct: 290 FNQAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNI 349
Query: 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 469
RG D ++VN+++NYD + + YLHR+GRAGRFG KG+ + + +D +
Sbjct: 350 FGRGIDIERVNVVINYD--------MAESADTYLHRVGRAGRFGTKGLAISFVPSKEDPV 401
Query: 470 IMEKIERYFDIKVTEV 485
+ E+++ F + + E+
Sbjct: 402 L-EQVQSKFVVSIKEL 416
>DICTYBASE|DDB_G0269146 [details] [associations]
symbol:ifdA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
Length = 395
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 121/354 (34%), Positives = 203/354 (57%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F+++ L +LL+G+Y F+KPS IQ ++ + L+ + ++IAQA++G+GKT F +G
Sbjct: 25 SFDNMELPKDLLRGIY-SYGFEKPSAIQQRAI-IPLSKGF-DIIAQAQSGTGKTATFTVG 81
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVPISKR 219
+LSR+D ++ QAL I PTRELA Q +V+ +G++ I S C T T+ + +
Sbjct: 82 ILSRIDISVLKCQALIIAPTRELAQQIQKVVLALGEYLHIKSYACIGGTKITDDIQALQS 141
Query: 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279
VV+GTPG + + +S + ++I DEAD ML GF+D I + + ++
Sbjct: 142 G---VHVVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSR-GFKDQIYEIFRFLPKT 197
Query: 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339
QV LFSAT + ++ +++ + VKK+EL+LE ++Q+ V E K V+
Sbjct: 198 ---IQVGLFSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVL 254
Query: 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
D ++E + Q++IF T+ L + + + V++ G Q++RD I++ F+ G
Sbjct: 255 TD-LYET-LSITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGD--QKDRDGILQAFRSG 310
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 453
T+VLI+TD+LARG D QQV+L++N+D P ++ + R GR GR G
Sbjct: 311 ATRVLITTDLLARGIDVQQVSLVINFDLPTNIENYIHR-----IGRSGRFGRKG 359
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 90/260 (34%), Positives = 151/260 (58%)
Query: 226 VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQV 285
VV+GTPG + + +S + ++I DEAD ML GF+D I + + ++ QV
Sbjct: 145 VVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSR-GFKDQIYEIFRFLPKT---IQV 200
Query: 286 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 345
LFSAT + ++ +++ + VKK+EL+LE ++Q+ V E K V+ D ++E
Sbjct: 201 GLFSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLTD-LYE 259
Query: 346 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405
+ Q++IF T+ L + + + V++ G Q++RD I++ F+ G T+VLI
Sbjct: 260 T-LSITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGD--QKDRDGILQAFRSGATRVLI 316
Query: 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465
+TD+LARG D QQV+L++N+D P + E Y+HRIGR+GRFGRKGV N + D
Sbjct: 317 TTDLLARGIDVQQVSLVINFDLPT--------NIENYIHRIGRSGRFGRKGVAINFITDA 368
Query: 466 DDMIIMEKIERYFDIKVTEV 485
+ I +++ R+++ + E+
Sbjct: 369 ERGQI-DELSRHYNTYIAEM 387
>TAIR|locus:2147987 [details] [associations]
symbol:UAP56a "homolog of human UAP56 a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
Genevestigator:Q56XG6 Uniprot:Q56XG6
Length = 427
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 121/420 (28%), Positives = 211/420 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
+E +KV ++ ++K G ++ F D L PELL+ + V+ F+ PS++Q
Sbjct: 19 EEDEKVPDSGNKVNGEAVKKGYVG----IHSSGFRDFLLKPELLRAI-VDSGFEHPSEVQ 73
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
+P + ++I QA++G GKT FVL L +++P+ AL +C TRELA Q
Sbjct: 74 HECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQIC 131
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKR--PPVTAQVVIGTPGTIKKWMSAKKLGFS 246
+ + T + +V N + I K +V+GTPG + K L
Sbjct: 132 NEFVRFSTYLPDT-KVSVFYGGVN-IKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLK 189
Query: 247 RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKD 306
++ + DE D ML+ R D I K QV++FSAT ++ ++ + ++D
Sbjct: 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK---QVMMFSATLSKEIRPVCKKFMQD 246
Query: 307 YNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365
+++V E +L+L + Q+ + E+ K + D + L Q +IFV++ + A+
Sbjct: 247 PMEIYVDDEAKLTLHGLVQHYIKL-SEMEKNRKLNDLLDALD--FNQVVIFVKSVSRAAE 303
Query: 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425
L+K L + + I QEER K FK+G ++L++TD++ RG D ++VN+++NY
Sbjct: 304 LNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 363
Query: 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
D P + YLHR+GRAGRFG KG+ + D ++ +++ F++ + E+
Sbjct: 364 DMP--------DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKEL 415
>ZFIN|ZDB-GENE-030131-4275 [details] [associations]
symbol:ddx39aa "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Aa" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-4275 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BC071505
IPI:IPI00510085 UniGene:Dr.1111 ProteinModelPortal:Q6IQA5
SMR:Q6IQA5 STRING:Q6IQA5 PRIDE:Q6IQA5 InParanoid:Q6IQA5
ArrayExpress:Q6IQA5 Bgee:Q6IQA5 Uniprot:Q6IQA5
Length = 427
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 133/435 (30%), Positives = 218/435 (50%)
Query: 59 AELDVEGLTID--ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLY 116
AE DVE +D E ++ +D + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVENELLDYEEDEEPQPTVDSGATTGKKEVK-GSYVSIHSSGFRDFLLKPELLRAI- 59
Query: 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 60 VDCGFEHPSEVQHECIPQAILG--MDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLV 117
Query: 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPG 232
+C TRELA Q + + K+ + +CA + I K V + +V+GTPG
Sbjct: 118 MCHTRELAFQISKEYERFSKYMS-SVKCAAFFGGMS---IKKDEDVLKKNCPHIVVGTPG 173
Query: 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSAT 291
I K L +K V DE D ML++ R D ++DI R + H Q ++FSAT
Sbjct: 174 RILALSRNKTLTLKNVKHFVLDECDKMLEQLDMRRD----VQDIFRLTPHEKQCMMFSAT 229
Query: 292 FNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 350
++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 230 LSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDLLDVL--EF 286
Query: 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 287 NQVVIFVKSVPRCVALSQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQRRILVATNLF 346
Query: 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 470
RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ + D D I
Sbjct: 347 GRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAVIFVSDETDAKI 398
Query: 471 MEKIERYFDIKVTEV 485
+ ++ F++ V E+
Sbjct: 399 LNDVQDRFEVNVAEL 413
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 128/389 (32%), Positives = 201/389 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L L P ++ + V +++PS IQ S+P+IL ++I QA+ G+GKT F L +
Sbjct: 8 FAALELHPNIVAAV-VATGYEEPSAIQQQSIPIILAG--HDMIGQAQTGTGKTAAFALPI 64
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRP 220
L R+DP+ + PQAL + PTRELA+Q K G+T AV P K
Sbjct: 65 LHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTV-VAV-YGGAPMGPQLKAI 122
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
AQ+V+ TPG + + + + + LV DEAD ML + GF DD I K + +
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEML-KLGFMDDLEVIFKAMPETR 181
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
Q +LFSAT ++++ R +KD + ++ + ++ +++Q + + V+
Sbjct: 182 ---QTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLS 238
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
+ E+ E I+FVRTK + L AL+ GY+ + G Q +R++++ KDG
Sbjct: 239 --LLEV-EDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGR 295
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
++++TDV ARG D ++ + N D P D E Y+HRIGR GR GR+G
Sbjct: 296 LDIVVATDVAARGLDVPRITHVFNVDMPY--------DPESYVHRIGRTGRAGREGRAL- 346
Query: 461 LLMDGDDMIIMEKIERYFDIKVTEVRNSD 489
LL+ + +++ IER KV EVR D
Sbjct: 347 LLVTPRERRMLQVIERVTGQKVAEVRLPD 375
>ZFIN|ZDB-GENE-040426-2902 [details] [associations]
symbol:ddx39ab "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Ab" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-2902 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOVERGEN:HBG107334 KO:K13182 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 OMA:WANCVIS CTD:7919 EMBL:FP101915
EMBL:BC044169 EMBL:BC067555 EMBL:BC128804 EMBL:BX248081
IPI:IPI00631848 RefSeq:NP_998142.1 UniGene:Dr.75872 SMR:Q803W0
STRING:Q803W0 Ensembl:ENSDART00000019957 GeneID:406249
KEGG:dre:406249 InParanoid:Q803W0 NextBio:20817884 Uniprot:Q803W0
Length = 427
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 133/436 (30%), Positives = 219/436 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D E + + E+ K G ++ F D L PELL+ + V
Sbjct: 2 AENDVENELLDYEEDEEPQGAPESAAPVGKKEVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPGT 233
C TRELA Q + + K+ T + AV + I K V + +V+GTPG
Sbjct: 119 CHTRELAFQISKEYERFSKYMP-TVKVAVFFGGMS---IKKDEDVLKKSCPHIVVGTPGR 174
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATF 292
I + K L +K V DE D ML++ R D ++DI R + H Q ++FSAT
Sbjct: 175 ILALVRNKTLNLKNVKHFVLDECDKMLEQLDMRRD----VQDIFRLTPHEKQCMMFSATL 230
Query: 293 NETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGE--K 349
++ ++ + ++D ++FV E +L+L ++QY YC K ++F+L + +
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY--YCK---LKDNEKNRKLFDLLDVLE 285
Query: 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 286 FNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNL 345
Query: 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 469
RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ + D D
Sbjct: 346 FGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDETDAK 397
Query: 470 IMEKIERYFDIKVTEV 485
I+ ++ F++ V E+
Sbjct: 398 ILNDVQDRFEVNVAEL 413
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 131/390 (33%), Positives = 197/390 (50%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
+A +F LNL PELL L M F + IQA SLP IL +++I Q + GSGKT F
Sbjct: 2 NANSFAALNLKPELLANLET-MGFATMTPIQAQSLPAILKG--QDVIGQGKTGSGKTAAF 58
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK--HT-GITSECA-VPTDSTNY 213
LG+LS ++ QAL +CPTRELA Q +R +G+ H + + C +P
Sbjct: 59 GLGVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMG---- 114
Query: 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIM 273
P A +++GTPG I +S ++ S L LV DEAD ML E GF++ +L +
Sbjct: 115 -PQIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRML-EMGFQE-ALEAI 171
Query: 274 KDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL-SLESVKQYKVYCPDE 332
I + Q LLFSAT+ +++ + + N L +K E S++QY
Sbjct: 172 --IAAAPAERQTLLFSATYPASIEQIAQSVTR--NALMIKVEATHDTSSIRQYFYKVEGS 227
Query: 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 392
A+ + + L + +++F TK + AL G+ V + G Q ERD+
Sbjct: 228 AARDEALETLL--LHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQA 285
Query: 393 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 452
+ +F + +L++TDV ARG D ++ + NYD L D EV++HRIGR GR
Sbjct: 286 LVQFANKSISILVATDVAARGLDVDNLDAVFNYD--------LSRDPEVHVHRIGRTGRA 337
Query: 453 GRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482
G KG+ F+ D + + + I+ Y DI +
Sbjct: 338 GSKGLAFSFFSDNESYRVAQ-IDEYMDIAI 366
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 430 (156.4 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 124/410 (30%), Positives = 213/410 (51%)
Query: 53 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELL 112
S+ + E + E + + E K+V + D AE +I +P + T+F+ L LS +L
Sbjct: 85 SKQEEEEEEEEEEVEVPEVKEVVEPEDSAE--AIADFYEESSPQQTHTSFQTLQLSRPVL 142
Query: 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLK 170
KG+ E+KF KP+ IQ+ S+P+ L ++++A A+ GSGKT +++ ++ R+ P+
Sbjct: 143 KGI-AELKFTKPTPIQSASIPIALLG--KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTS 199
Query: 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGT 230
+ + + PTRELA+Q E +K+ H + N ++ +VI T
Sbjct: 200 T-KVIILTPTRELALQVYEFGKKLSHHVN-NLNIGLAVGGLNLRQQEEQLKTRPDIVIAT 257
Query: 231 PGT-IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289
PG I ++ +++LV DEAD ML+E GF+D+ I+ I + Q LLFS
Sbjct: 258 PGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEE-GFQDELTEILSLIPKHKR--QTLLFS 314
Query: 290 ATFNETVKNFVT-RIVKDYNQLFVKKEELSLESVKQY-KVYCPDELAKVMVIRDRIFELG 347
AT N +++ + + K + + ++ + ++Q+ ++ D+L + +++L
Sbjct: 315 ATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPAL-----LYQLL 369
Query: 348 EKMG-QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 406
+ + + ++FV K +A L L G +V+ + GA QE+R + VK FK VLI
Sbjct: 370 KGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLIC 429
Query: 407 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456
TD+ ARG D ++ L++NYD P E+YLHR+GR R GR G
Sbjct: 430 TDLAARGLDIPKIELVINYDMPKTF--------EIYLHRVGRTARAGRDG 471
Score = 43 (20.2 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 49 TANTSEDKSTAELDVEGLTIDES-KKVNKFLDEAEDSSI 86
T NT E+ E V+ + +DE KK +E++D +
Sbjct: 37 TTNTLEEFDFQENKVKEVDLDEIIKKKGGLKEESDDEEL 75
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 430 (156.4 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 124/410 (30%), Positives = 213/410 (51%)
Query: 53 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELL 112
S+ + E + E + + E K+V + D AE +I +P + T+F+ L LS +L
Sbjct: 85 SKQEEEEEEEEEEVEVPEVKEVVEPEDSAE--AIADFYEESSPQQTHTSFQTLQLSRPVL 142
Query: 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLK 170
KG+ E+KF KP+ IQ+ S+P+ L ++++A A+ GSGKT +++ ++ R+ P+
Sbjct: 143 KGI-AELKFTKPTPIQSASIPIALLG--KDIVAGAQTGSGKTGAYMIPIIERLLYKPSTS 199
Query: 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGT 230
+ + + PTRELA+Q E +K+ H + N ++ +VI T
Sbjct: 200 T-KVIILTPTRELALQVYEFGKKLSHHVN-NLNIGLAVGGLNLRQQEEQLKTRPDIVIAT 257
Query: 231 PGT-IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289
PG I ++ +++LV DEAD ML+E GF+D+ I+ I + Q LLFS
Sbjct: 258 PGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEE-GFQDELTEILSLIPKHKR--QTLLFS 314
Query: 290 ATFNETVKNFVT-RIVKDYNQLFVKKEELSLESVKQY-KVYCPDELAKVMVIRDRIFELG 347
AT N +++ + + K + + ++ + ++Q+ ++ D+L + +++L
Sbjct: 315 ATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPAL-----LYQLL 369
Query: 348 EKMG-QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 406
+ + + ++FV K +A L L G +V+ + GA QE+R + VK FK VLI
Sbjct: 370 KGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLIC 429
Query: 407 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456
TD+ ARG D ++ L++NYD P E+YLHR+GR R GR G
Sbjct: 430 TDLAARGLDIPKIELVINYDMPKTF--------EIYLHRVGRTARAGRDG 471
Score = 43 (20.2 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 49 TANTSEDKSTAELDVEGLTIDES-KKVNKFLDEAEDSSI 86
T NT E+ E V+ + +DE KK +E++D +
Sbjct: 37 TTNTLEEFDFQENKVKEVDLDEIIKKKGGLKEESDDEEL 75
>FB|FBgn0014189 [details] [associations]
symbol:Hel25E "Helicase at 25E" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0005700
"polytene chromosome" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS;NAS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005875 GO:GO:0007052
EMBL:AE014134 GO:GO:0016607 GO:GO:0005681 GO:GO:0003723
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095549
KO:K12812 EMBL:X79802 EMBL:L06018 EMBL:AY118921 PIR:S51601
RefSeq:NP_723089.1 RefSeq:NP_723090.1 RefSeq:NP_723091.1
UniGene:Dm.3332 ProteinModelPortal:Q27268 SMR:Q27268 DIP:DIP-20199N
IntAct:Q27268 MINT:MINT-304772 STRING:Q27268 PaxDb:Q27268
PRIDE:Q27268 EnsemblMetazoa:FBtr0079123 EnsemblMetazoa:FBtr0079124
EnsemblMetazoa:FBtr0079125 GeneID:33781 KEGG:dme:Dmel_CG7269
CTD:33781 FlyBase:FBgn0014189 InParanoid:Q27268 OMA:ENRFLEE
OrthoDB:EOG47WM45 PhylomeDB:Q27268 GenomeRNAi:33781 NextBio:785218
Bgee:Q27268 GermOnline:CG7269 Uniprot:Q27268
Length = 424
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 123/393 (31%), Positives = 209/393 (53%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F D L PE+L+ + V+ F+ PS++Q +P + +++ QA++G GKT FVL
Sbjct: 43 FRDFLLKPEILRAI-VDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLAT 99
Query: 162 LSRVDPN-LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
L +++P+ L +C TRELA Q + + K+ T + AV + I K
Sbjct: 100 LQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMP-TVKVAVFFGG---MAIQKDE 155
Query: 221 PV----TAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
T +V+GTPG I + KKL LK V DE D ML++ R D +++I
Sbjct: 156 ETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRD----VQEI 211
Query: 277 ERSSGHC-QVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELA 334
RS+ H QV++FSAT ++ ++ + ++D +++V E +L+L ++Q+ V +
Sbjct: 212 FRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKEN-E 270
Query: 335 KVMVIRDRIFELGE--KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 392
K ++FEL + + Q +IFV++ AL + L + + I QEER
Sbjct: 271 K----NKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNR 326
Query: 393 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 452
++FKD ++L++T++ RG D ++VN++ NYD P D + YLHR+ RAGRF
Sbjct: 327 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRF 378
Query: 453 GRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
G KG+ + D +D I+ +++ FD+ ++E+
Sbjct: 379 GTKGLAITFVSDENDAKILNEVQDRFDVNISEL 411
>UNIPROTKB|Q3T147 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9913 "Bos taurus" [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0043008 "ATP-dependent protein
binding" evidence=IEA] [GO:0030621 "U4 snRNA binding" evidence=IEA]
[GO:0017070 "U6 snRNA binding" evidence=IEA] [GO:0010501 "RNA
secondary structure unwinding" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0000346 "transcription export
complex" evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 GO:GO:0006406 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000245
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010501 GO:GO:0017070 HSSP:Q5STU4 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 EMBL:BC102131
IPI:IPI00690141 RefSeq:NP_001028801.1 UniGene:Bt.4945
ProteinModelPortal:Q3T147 SMR:Q3T147 STRING:Q3T147 PRIDE:Q3T147
Ensembl:ENSBTAT00000029090 GeneID:540191 KEGG:bta:540191 CTD:7919
InParanoid:Q3T147 KO:K12812 OMA:NAENPAI NextBio:20878478
ArrayExpress:Q3T147 GO:GO:0000346 GO:GO:0005687 GO:GO:0005688
GO:GO:0030621 GO:GO:0046784 Uniprot:Q3T147
Length = 428
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 133/436 (30%), Positives = 221/436 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFL--DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
AE DV+ +D E +V D AE + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVK-GSYVSIHSSGFRDFLLKPELLRAI 60
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 -VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 117
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTP 231
+C TRELA Q + + K+ + + AV + I K V + +V+GTP
Sbjct: 118 VMCHTRELAFQISKEYERFSKYMP-SVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTP 173
Query: 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSA 290
G I K L +K + DE D ML++ R D +++I R + H QV++FSA
Sbjct: 174 GRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD----VQEIFRMTPHEKQVMMFSA 229
Query: 291 TFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEK 349
T ++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 230 TLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLLDVL--E 286
Query: 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 287 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 346
Query: 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 469
RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ + D +D
Sbjct: 347 FGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 470 IMEKIERYFDIKVTEV 485
I+ ++ F++ ++E+
Sbjct: 399 ILNDVQDRFEVNISEL 414
>UNIPROTKB|Q5ZHZ0 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334
EMBL:AJ720994 IPI:IPI00585240 ProteinModelPortal:Q5ZHZ0 SMR:Q5ZHZ0
Uniprot:Q5ZHZ0
Length = 428
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 127/434 (29%), Positives = 215/434 (49%)
Query: 60 ELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEM 119
++D E L +E + N + ++ K G ++ F D L PELL+ + V+
Sbjct: 5 DVDNELLDYEEDEVENAAGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-VDC 63
Query: 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179
F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +C
Sbjct: 64 GFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 121
Query: 180 TRELAIQNLEVLRKMGKHTGITSEC------AVPTDSTNYVPISKRPPVTAQVVIGTPGT 233
TRELA Q + + K+ AV D + K P +V+GTPG
Sbjct: 122 TRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEE---VLKKNCP---HIVVGTPGR 175
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATF 292
I K L +K + DE D ML++ R D +++I R + H QV++FSAT
Sbjct: 176 ILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD----VQEIFRMTPHEKQVMMFSATL 231
Query: 293 NETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 351
++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLLDVL--EFN 288
Query: 352 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 289 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 348
Query: 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 471
RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ + D +D I+
Sbjct: 349 RGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 400
Query: 472 EKIERYFDIKVTEV 485
++ F++ ++E+
Sbjct: 401 NDVQDRFEVNISEL 414
>UNIPROTKB|Q13838 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0000346 "transcription export complex"
evidence=IDA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0043008
"ATP-dependent protein binding" evidence=IDA] [GO:0005687 "U4
snRNP" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0030621 "U4 snRNA binding" evidence=IDA] [GO:0017070 "U6 snRNA
binding" evidence=IDA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 EMBL:BA000025 EMBL:CH471081
GO:GO:0016607 GO:GO:0005681 TCDB:3.A.18.1.1 EMBL:AL662847
EMBL:AL662801 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_BAT1 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX CTD:7919 KO:K12812
GO:GO:0000346 GO:GO:0030621 GO:GO:0046784 EMBL:Z37166 EMBL:BT009909
EMBL:AK222912 EMBL:AB088115 EMBL:AB103621 EMBL:AB202112
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 EMBL:BC000361 EMBL:BC013006 EMBL:AF029061
EMBL:AF029062 IPI:IPI00641829 IPI:IPI00848161 PIR:I37201
RefSeq:NP_004631.1 RefSeq:NP_542165.1 UniGene:Hs.254042
UniGene:Hs.730849 PDB:1T5I PDB:1T6N PDB:1XTI PDB:1XTJ PDB:1XTK
PDBsum:1T5I PDBsum:1T6N PDBsum:1XTI PDBsum:1XTJ PDBsum:1XTK
ProteinModelPortal:Q13838 SMR:Q13838 IntAct:Q13838
MINT:MINT-1032422 STRING:Q13838 PhosphoSite:Q13838 DMDM:2500529
PaxDb:Q13838 PRIDE:Q13838 DNASU:7919 Ensembl:ENST00000383508
Ensembl:ENST00000396172 Ensembl:ENST00000400295
Ensembl:ENST00000400296 Ensembl:ENST00000412106
Ensembl:ENST00000412330 Ensembl:ENST00000413678
Ensembl:ENST00000414440 Ensembl:ENST00000415689
Ensembl:ENST00000416863 Ensembl:ENST00000430784
Ensembl:ENST00000431360 Ensembl:ENST00000441425
Ensembl:ENST00000445218 Ensembl:ENST00000448296
Ensembl:ENST00000453138 Ensembl:ENST00000456476
Ensembl:ENST00000456666 Ensembl:ENST00000458640 GeneID:7919
KEGG:hsa:7919 UCSC:uc003ntt.3 GeneCards:GC06M031500 HGNC:HGNC:13917
HPA:CAB034012 MIM:142560 neXtProt:NX_Q13838 PharmGKB:PA25262
InParanoid:Q13838 PhylomeDB:Q13838 ChiTaRS:DDX39B
EvolutionaryTrace:Q13838 GenomeRNAi:7919 NextBio:30405
ArrayExpress:Q13838 Bgee:Q13838 Genevestigator:Q13838
GermOnline:ENSG00000198563 GO:GO:0043008 Uniprot:Q13838
Length = 428
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 133/436 (30%), Positives = 220/436 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFL--DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
AE DV+ +D E +V D AE + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVK-GSYVSIHSSGFRDFLLKPELLRAI 60
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 -VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 117
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTP 231
+C TRELA Q + + K+ + AV + I K V + +V+GTP
Sbjct: 118 VMCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTP 173
Query: 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSA 290
G I K L +K + DE D ML++ R D +++I R + H QV++FSA
Sbjct: 174 GRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD----VQEIFRMTPHEKQVMMFSA 229
Query: 291 TFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEK 349
T ++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 230 TLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLLDVL--E 286
Query: 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 287 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 346
Query: 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 469
RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ + D +D
Sbjct: 347 FGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 470 IMEKIERYFDIKVTEV 485
I+ ++ F++ ++E+
Sbjct: 399 ILNDVQDRFEVNISEL 414
>UNIPROTKB|Q29024 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784 "intronless viral
mRNA export from host nucleus" evidence=IEA] [GO:0043008
"ATP-dependent protein binding" evidence=IEA] [GO:0030621 "U4 snRNA
binding" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005687 "U4 snRNP"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0016607
GO:GO:0005681 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000245 GO:GO:0004004 EMBL:AJ251914 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:Z34846 PIR:I47126
RefSeq:NP_001005157.1 UniGene:Ssc.11719 ProteinModelPortal:Q29024
SMR:Q29024 STRING:Q29024 PRIDE:Q29024 Ensembl:ENSSSCT00000001529
GeneID:448813 KEGG:ssc:448813 ArrayExpress:Q29024 Uniprot:Q29024
Length = 428
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 133/436 (30%), Positives = 220/436 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFL--DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
AE DV+ +D E +V D AE + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVK-GSYVSIHSSGFRDFLLKPELLRAI 60
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 -VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL 117
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTP 231
+C TRELA Q + + K+ + AV + I K V + +V+GTP
Sbjct: 118 VMCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTP 173
Query: 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSA 290
G I K L +K + DE D ML++ R D +++I R + H QV++FSA
Sbjct: 174 GRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD----VQEIFRMTPHEKQVMMFSA 229
Query: 291 TFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEK 349
T ++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 230 TLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLLDVL--E 286
Query: 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 287 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 346
Query: 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 469
RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ + D +D
Sbjct: 347 FGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAK 398
Query: 470 IMEKIERYFDIKVTEV 485
I+ ++ F++ ++E+
Sbjct: 399 ILNDVQDRFEVNISEL 414
>UNIPROTKB|E2QY95 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:10212
KO:K13182 GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:AAEX03012368 RefSeq:XP_533895.2 Ensembl:ENSCAFT00000025943
GeneID:476689 KEGG:cfa:476689 NextBio:20852303 Uniprot:E2QY95
Length = 427
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 128/433 (29%), Positives = 217/433 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D E + + E+ + K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENELLDYEEDEEPQAPPESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKH---TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 234
C TRELA Q + + K+ ++ + + + K P VV+GTPG I
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP---HVVVGTPGRI 175
Query: 235 KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATFN 293
+ + L +K V DE D ML++ R D +++I R + H Q ++FSAT +
Sbjct: 176 LALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRD----VQEIFRLTPHEKQCMMFSATLS 231
Query: 294 ETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQ 352
+ ++ + ++D ++FV E +L+L ++QY V D K + D + L + Q
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDLLDVL--EFNQ 288
Query: 353 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412
+IFV++ AL + L + + I QEER ++FKD ++L++T++ R
Sbjct: 289 VVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348
Query: 413 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472
G D ++VN++ NYD P D + YLHR+ RAGRFG KG+ + D +D I+
Sbjct: 349 GMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 400
Query: 473 KIERYFDIKVTEV 485
++ F++ V E+
Sbjct: 401 DVQDRFEVNVAEL 413
>RGD|619920 [details] [associations]
symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AF063447 RGD:619920
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:BC086328 IPI:IPI00325144 RefSeq:NP_446015.2 UniGene:Rn.161716
ProteinModelPortal:Q5U216 SMR:Q5U216 STRING:Q5U216 PRIDE:Q5U216
Ensembl:ENSRNOT00000045974 GeneID:89827 KEGG:rno:89827
InParanoid:Q5U216 NextBio:617744 Genevestigator:Q5U216
GermOnline:ENSRNOG00000004373 Uniprot:Q5U216
Length = 427
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 129/434 (29%), Positives = 220/434 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D + + + E+ + K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENELLDYDEDEEPQVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPGT 233
C TRELA Q + + K+ + + +V + I K V + VV+GTPG
Sbjct: 119 CHTRELAFQISKEYERFSKYMP-SVKVSVFFGGLS---IKKDEDVLKKNCPHVVVGTPGR 174
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATF 292
I + ++ L +K V DE D ML++ R D +++I R + H Q ++FSAT
Sbjct: 175 ILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRD----VQEIFRLTPHEKQCMMFSATL 230
Query: 293 NETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 351
++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDLLDVL--EFN 287
Query: 352 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 288 QVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFG 347
Query: 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 471
RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ + D +D I+
Sbjct: 348 RGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKIL 399
Query: 472 EKIERYFDIKVTEV 485
++ F++ V E+
Sbjct: 400 NDVQDRFEVNVAEL 413
>UNIPROTKB|Q5WR10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9615 "Canis lupus familiaris" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784
"intronless viral mRNA export from host nucleus" evidence=IEA]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA]
[GO:0030621 "U4 snRNA binding" evidence=IEA] [GO:0017070 "U6 snRNA
binding" evidence=IEA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:AY423389
RefSeq:NP_001014399.1 UniGene:Cfa.10131 ProteinModelPortal:Q5WR10
SMR:Q5WR10 Ensembl:ENSCAFT00000036511 GeneID:474839 KEGG:cfa:474839
InParanoid:Q5WR10 NextBio:20850784 Uniprot:Q5WR10
Length = 428
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 129/435 (29%), Positives = 218/435 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLD-EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLY 116
AE DV+ +D E +V + ++ K G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEEDEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI- 60
Query: 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 118
Query: 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPG 232
+C TRELA Q + + K+ + AV + I K V + +V+GTPG
Sbjct: 119 MCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTPG 174
Query: 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSAT 291
I K L +K + DE D ML++ R D +++I R + H QV++FSAT
Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD----VQEIFRMTPHEKQVMMFSAT 230
Query: 292 FNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 350
++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLLDVL--EF 287
Query: 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 288 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 347
Query: 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 470
RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ + D +D I
Sbjct: 348 GRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKI 399
Query: 471 MEKIERYFDIKVTEV 485
+ ++ F++ ++E+
Sbjct: 400 LNDVQDRFEVNISEL 414
>MGI|MGI:1915528 [details] [associations]
symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915528 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX EMBL:AK088894 EMBL:AK145927 EMBL:AK146294
EMBL:AK150997 EMBL:AK162752 EMBL:AK168079 EMBL:BC020134
IPI:IPI00123878 IPI:IPI00553461 RefSeq:NP_932099.2 UniGene:Mm.28222
ProteinModelPortal:Q8VDW0 SMR:Q8VDW0 STRING:Q8VDW0
PhosphoSite:Q8VDW0 PaxDb:Q8VDW0 PRIDE:Q8VDW0
Ensembl:ENSMUST00000019576 Ensembl:ENSMUST00000109810
Ensembl:ENSMUST00000172396 GeneID:68278 KEGG:mmu:68278
UCSC:uc008chc.2 CTD:68278 GeneTree:ENSGT00660000095549
InParanoid:Q8VDW0 OMA:WANCVIS NextBio:326910 Bgee:Q8VDW0
CleanEx:MM_DDX39 Genevestigator:Q8VDW0
GermOnline:ENSMUSG00000005481 Uniprot:Q8VDW0
Length = 427
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 129/434 (29%), Positives = 220/434 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D + + + E+ + K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPGT 233
C TRELA Q + + K+ + + +V + I K V + VV+GTPG
Sbjct: 119 CHTRELAFQISKEYERFSKYMP-SVKVSVFFGGLS---IKKDEDVLKKNCPHVVVGTPGR 174
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATF 292
I + ++ L +K V DE D ML++ R D +++I R + H Q ++FSAT
Sbjct: 175 ILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRD----VQEIFRLTPHEKQCMMFSATL 230
Query: 293 NETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 351
++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDLLDVL--EFN 287
Query: 352 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 288 QVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFG 347
Query: 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 471
RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ + D +D I+
Sbjct: 348 RGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKIL 399
Query: 472 EKIERYFDIKVTEV 485
++ F++ V E+
Sbjct: 400 NDVQDRFEVNVAEL 413
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 122/362 (33%), Positives = 188/362 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+ L L LLK + ++ F+ P+ IQ ++P+IL NL+ QA G+GKT ++L +
Sbjct: 4 FKKLGLITPLLKAVN-DLGFEMPTPIQKEAIPLILEG--HNLVGQAPTGTGKTAAYLLPV 60
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L R+ KA Q L + PTRELA+Q + + K+GK+ + + + R
Sbjct: 61 LQRIQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG 281
V +V++GTPG I + K + +KI++ DEAD MLD GF DD I+ +
Sbjct: 120 V--EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLD-MGFIDDIEAILNTLTNRQ- 175
Query: 282 HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 341
Q LLFSAT +K + + + Y + + E ++ +++Q VY EL + I
Sbjct: 176 --QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQ--VYY--ELPETEKIEG 229
Query: 342 RIFELGEKMG-QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
+ L ++ Q I+F RTK + + L GY + G Q ER + +K FK G
Sbjct: 230 LVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGK 289
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
T++L++TDV ARG D V+ ++N+D P P E Y+HRIGR GR GR+G
Sbjct: 290 TELLVATDVAARGLDIPDVSHVINFDIPQN------P--ESYIHRIGRTGRAGREGKAIT 341
Query: 461 LL 462
L+
Sbjct: 342 LI 343
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 109/323 (33%), Positives = 166/323 (51%)
Query: 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201
NL+ QA G+GKT ++L +L R+ KA Q L + PTRELA+Q + + K+GK+ +
Sbjct: 41 NLVGQAPTGTGKTAAYLLPVLQRIQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLKVR 99
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
+ + R V +V++GTPG I + K + +KI++ DEAD MLD
Sbjct: 100 ALAVYGGQAIERQIRGLRQGV--EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLD 157
Query: 262 EAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES 321
GF DD I+ + Q LLFSAT +K + + + Y + + E ++ +
Sbjct: 158 -MGFIDDIEAILNTLTNRQ---QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPA 213
Query: 322 VKQYKVYCPDELAKVMVIRDRIFELGEKMG-QTIIFVRTKNSASALHKALKDFGYEVTTI 380
++Q VY EL + I + L ++ Q I+F RTK + + L GY +
Sbjct: 214 IRQ--VYY--ELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGL 269
Query: 381 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCE 440
G Q ER + +K FK G T++L++TDV ARG D V+ ++N+D P P E
Sbjct: 270 HGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQN------P--E 321
Query: 441 VYLHRIGRAGRFGRKG---VVFN 460
Y+HRIGR GR GR+G + N
Sbjct: 322 SYIHRIGRTGRAGREGKAITLIN 344
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 122/362 (33%), Positives = 188/362 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+ L L LLK + ++ F+ P+ IQ ++P+IL NL+ QA G+GKT ++L +
Sbjct: 4 FKKLGLITPLLKAVN-DLGFEMPTPIQKEAIPLILEG--HNLVGQAPTGTGKTAAYLLPV 60
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L R+ KA Q L + PTRELA+Q + + K+GK+ + + + R
Sbjct: 61 LQRIQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQG 119
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG 281
V +V++GTPG I + K + +KI++ DEAD MLD GF DD I+ +
Sbjct: 120 V--EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLD-MGFIDDIEAILNTLTNRQ- 175
Query: 282 HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 341
Q LLFSAT +K + + + Y + + E ++ +++Q VY EL + I
Sbjct: 176 --QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQ--VYY--ELPETEKIEG 229
Query: 342 RIFELGEKMG-QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
+ L ++ Q I+F RTK + + L GY + G Q ER + +K FK G
Sbjct: 230 LVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGK 289
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
T++L++TDV ARG D V+ ++N+D P P E Y+HRIGR GR GR+G
Sbjct: 290 TELLVATDVAARGLDIPDVSHVINFDIPQN------P--ESYIHRIGRTGRAGREGKAIT 341
Query: 461 LL 462
L+
Sbjct: 342 LI 343
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 109/323 (33%), Positives = 166/323 (51%)
Query: 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201
NL+ QA G+GKT ++L +L R+ KA Q L + PTRELA+Q + + K+GK+ +
Sbjct: 41 NLVGQAPTGTGKTAAYLLPVLQRIQRGKKA-QVLIVTPTRELALQVADEVAKLGKYLKVR 99
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
+ + R V +V++GTPG I + K + +KI++ DEAD MLD
Sbjct: 100 ALAVYGGQAIERQIRGLRQGV--EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLD 157
Query: 262 EAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES 321
GF DD I+ + Q LLFSAT +K + + + Y + + E ++ +
Sbjct: 158 -MGFIDDIEAILNTLTNRQ---QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPA 213
Query: 322 VKQYKVYCPDELAKVMVIRDRIFELGEKMG-QTIIFVRTKNSASALHKALKDFGYEVTTI 380
++Q VY EL + I + L ++ Q I+F RTK + + L GY +
Sbjct: 214 IRQ--VYY--ELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGL 269
Query: 381 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCE 440
G Q ER + +K FK G T++L++TDV ARG D V+ ++N+D P P E
Sbjct: 270 HGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQN------P--E 321
Query: 441 VYLHRIGRAGRFGRKG---VVFN 460
Y+HRIGR GR GR+G + N
Sbjct: 322 SYIHRIGRTGRAGREGKAITLIN 344
>MGI|MGI:99240 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=ISO] [GO:0000346 "transcription export complex"
evidence=ISO] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=ISO] [GO:0030621 "U4 snRNA binding" evidence=ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:99240 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:AF118128 EMBL:AY255786 EMBL:AY255787
EMBL:AC007080 EMBL:AK088867 EMBL:AK051034 EMBL:BC011067
EMBL:BC024859 IPI:IPI00409462 RefSeq:NP_001239386.1
RefSeq:NP_062667.1 UniGene:Mm.439827 ProteinModelPortal:Q9Z1N5
SMR:Q9Z1N5 IntAct:Q9Z1N5 STRING:Q9Z1N5 PhosphoSite:Q9Z1N5
PaxDb:Q9Z1N5 PRIDE:Q9Z1N5 Ensembl:ENSMUST00000068056
Ensembl:ENSMUST00000172549 Ensembl:ENSMUST00000173731 GeneID:53817
KEGG:mmu:53817 InParanoid:Q9Z1N5 NextBio:310679 Bgee:Q9Z1N5
CleanEx:MM_BAT1A Genevestigator:Q9Z1N5 Uniprot:Q9Z1N5
Length = 428
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 129/435 (29%), Positives = 218/435 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLD-EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLY 116
AE DV+ +D E +V + ++ K G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI- 60
Query: 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 118
Query: 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPG 232
+C TRELA Q + + K+ + AV + I K V + +V+GTPG
Sbjct: 119 MCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTPG 174
Query: 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSAT 291
I K L +K + DE D ML++ R D +++I R + H QV++FSAT
Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD----VQEIFRMTPHEKQVMMFSAT 230
Query: 292 FNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 350
++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLLDVL--EF 287
Query: 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 288 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 347
Query: 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 470
RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ + D +D I
Sbjct: 348 GRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKI 399
Query: 471 MEKIERYFDIKVTEV 485
+ ++ F++ ++E+
Sbjct: 400 LNDVQDRFEVNISEL 414
>RGD|70923 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10116 "Rattus norvegicus" [GO:0000245 "spliceosomal complex
assembly" evidence=IEA;ISO] [GO:0000346 "transcription export
complex" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005687 "U4 snRNP" evidence=IEA;ISO]
[GO:0005688 "U6 snRNP" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=IEA;ISO] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=IEA;ISO] [GO:0030621 "U4 snRNA binding" evidence=IEA;ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:70923 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:M75168 EMBL:AF387339 EMBL:AJ314857 EMBL:BC080243
IPI:IPI00215291 PIR:A42811 RefSeq:NP_579834.2 UniGene:Rn.202950
ProteinModelPortal:Q63413 SMR:Q63413 STRING:Q63413
World-2DPAGE:0004:Q63413 PRIDE:Q63413 Ensembl:ENSRNOT00000001115
GeneID:114612 KEGG:rno:114612 UCSC:RGD:70923 InParanoid:Q63413
NextBio:618775 ArrayExpress:Q63413 Genevestigator:Q63413
GermOnline:ENSRNOG00000000841 Uniprot:Q63413
Length = 428
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 129/435 (29%), Positives = 218/435 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLD-EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLY 116
AE DV+ +D E +V + ++ K G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI- 60
Query: 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L
Sbjct: 61 VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 118
Query: 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPG 232
+C TRELA Q + + K+ + AV + I K V + +V+GTPG
Sbjct: 119 MCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDEEVLKKNCPHIVVGTPG 174
Query: 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSAT 291
I K L +K + DE D ML++ R D +++I R + H QV++FSAT
Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD----VQEIFRMTPHEKQVMMFSAT 230
Query: 292 FNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 350
++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLLDVL--EF 287
Query: 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 288 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 347
Query: 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 470
RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ + D +D I
Sbjct: 348 GRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKI 399
Query: 471 MEKIERYFDIKVTEV 485
+ ++ F++ ++E+
Sbjct: 400 LNDVQDRFEVNISEL 414
>UNIPROTKB|F1SCH3 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:WANCVIS EMBL:FP103015
Ensembl:ENSSSCT00000015052 Uniprot:F1SCH3
Length = 475
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 128/433 (29%), Positives = 216/433 (49%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D E + + E + K G ++ F D L PELL+ + V
Sbjct: 50 AEQDVENELLDYEEDEEPQAPPENAPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 108
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 109 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 166
Query: 178 CPTRELAIQNLEVLRKMGKH---TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 234
C TRELA Q + + K+ ++ + + + K P VV+GTPG I
Sbjct: 167 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP---HVVVGTPGRI 223
Query: 235 KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATFN 293
+ + L +K V DE D ML++ R D +++I R + H Q ++FSAT +
Sbjct: 224 LALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRD----VQEIFRLTPHEKQCMMFSATLS 279
Query: 294 ETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQ 352
+ ++ + ++D ++FV E +L+L ++QY V D K + D + L + Q
Sbjct: 280 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDLLDVL--EFNQ 336
Query: 353 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412
+IFV++ AL + L + + I QEER ++FKD ++L++T++ R
Sbjct: 337 VVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 396
Query: 413 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472
G D ++VN++ NYD P D + YLHR+ RAGRFG KG+ + D +D I+
Sbjct: 397 GMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 448
Query: 473 KIERYFDIKVTEV 485
++ F++ V E+
Sbjct: 449 DVQDRFEVNVAEL 461
>UNIPROTKB|Q5E970 [details] [associations]
symbol:DDX39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
isoform 1" species:9913 "Bos taurus" [GO:0006406 "mRNA export from
nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334
KO:K13182 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
OMA:WANCVIS EMBL:DAAA02019335 EMBL:BT021050 IPI:IPI00700228
RefSeq:NP_001029924.1 UniGene:Bt.29896 SMR:Q5E970 STRING:Q5E970
Ensembl:ENSBTAT00000029088 GeneID:614215 KEGG:bta:614215
InParanoid:Q5E970 NextBio:20899000 Uniprot:Q5E970
Length = 427
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 130/434 (29%), Positives = 218/434 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D E + + E+ K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENELLDYEEDEEPQAPPESAPPPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQ----VVIGTPGT 233
C TRELA Q + + K+ + + +V + I K V + VV+GTPG
Sbjct: 119 CHTRELAFQISKEYERFSKYMP-SVKVSVFFGGLS---IKKDEEVLKRNCPHVVVGTPGR 174
Query: 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATF 292
I + + L +K V DE D ML++ R D +++I R + H Q ++FSAT
Sbjct: 175 ILALVRNRSLNLRNVKHFVLDECDKMLEQLDMRRD----VQEIFRLTPHEKQCMMFSATL 230
Query: 293 NETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 351
++ ++ + ++D ++FV E +L+L ++QY V D K + D + L +
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDLLDVL--EFN 287
Query: 352 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411
Q +IFV++ AL + L + + I QEER ++FKD ++L++T++
Sbjct: 288 QVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFG 347
Query: 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 471
RG D ++VN++ NYD P D + YLHR+ RAGRFG KG+ + D +D I+
Sbjct: 348 RGMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKIL 399
Query: 472 EKIERYFDIKVTEV 485
++ F++ V E+
Sbjct: 400 NDVQDRFEVNVAEL 413
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 123/390 (31%), Positives = 200/390 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F L+L+ +L+ L E+ +Q+P+ IQ ++P ILT ++++A A+ G+GKT F L
Sbjct: 2 SFSALSLNTQLVDTL-AELGYQQPTPIQVEAIPAILTK--QDVMAGAQTGTGKTAAFALP 58
Query: 161 ML------SRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV 214
+L ++ D KA +AL + PTRELA+Q + K K T I A S
Sbjct: 59 ILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQ 118
Query: 215 PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMK 274
+ V+I TPG + + L ++L LV+DEAD MLD GF D+ ++K
Sbjct: 119 QAVFNAGI--DVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLD-MGFMDEIQAVLK 175
Query: 275 DIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 334
+ Q LLFSAT ++++ +F +++D ++ V K + ++Q +VY D
Sbjct: 176 QVPAQR---QTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQ-RVYAIDSDR 231
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
K + + + Q +IF RTK L L G + G Q R+K+++
Sbjct: 232 KTEFVSHLV--RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQ 289
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
EFK GL QVL++TDV ARG D ++ ++N++ P E Y+HRIGR GR G
Sbjct: 290 EFKQGLVQVLVATDVAARGLDIAELQYVINFELPFI--------AEDYIHRIGRTGRAGS 341
Query: 455 KGVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
G+ L +D +++E++E D ++ +
Sbjct: 342 AGLAITLFSQ-EDALLLEEVETLLDKRLPQ 370
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 123/390 (31%), Positives = 200/390 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F L+L+ +L+ L E+ +Q+P+ IQ ++P ILT ++++A A+ G+GKT F L
Sbjct: 2 SFSALSLNTQLVDTL-AELGYQQPTPIQVEAIPAILTK--QDVMAGAQTGTGKTAAFALP 58
Query: 161 ML------SRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV 214
+L ++ D KA +AL + PTRELA+Q + K K T I A S
Sbjct: 59 ILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQ 118
Query: 215 PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMK 274
+ V+I TPG + + L ++L LV+DEAD MLD GF D+ ++K
Sbjct: 119 QAVFNAGI--DVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLD-MGFMDEIQAVLK 175
Query: 275 DIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 334
+ Q LLFSAT ++++ +F +++D ++ V K + ++Q +VY D
Sbjct: 176 QVPAQR---QTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQ-RVYAIDSDR 231
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
K + + + Q +IF RTK L L G + G Q R+K+++
Sbjct: 232 KTEFVSHLV--RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQ 289
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
EFK GL QVL++TDV ARG D ++ ++N++ P E Y+HRIGR GR G
Sbjct: 290 EFKQGLVQVLVATDVAARGLDIAELQYVINFELPFI--------AEDYIHRIGRTGRAGS 341
Query: 455 KGVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
G+ L +D +++E++E D ++ +
Sbjct: 342 AGLAITLFSQ-EDALLLEEVETLLDKRLPQ 370
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 117/363 (32%), Positives = 188/363 (51%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FED + EL+ G++ E F+KPS IQ ++P+ LT R+++A+A+NG
Sbjct: 30 TEDVTATKGLEFEDFYIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNG 86
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT FV+ L R++P QAL + PTRELA+Q V + +GKH GI V T
Sbjct: 87 TGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGIN--VMVTTGG 144
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
T + R +++GTPG + S S V DEAD +L F
Sbjct: 145 TGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPE-FTPVIE 203
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
+++ + QV+LFSATF VK+F R +++ ++ + +EL+L + QY +
Sbjct: 204 QLLSFHPKDR---QVMLFSATFPMIVKSFKDRHMRNPYEINLM-DELTLRGITQYYAFV- 258
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
+E KV + +L ++ Q+IIF + N L K + + GY +Q+ R+
Sbjct: 259 EEKQKVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRN 316
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
++ +F++G+ + L+ +D+L RG D Q VN+++N+D P +L + R GR G
Sbjct: 317 RVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHR-----IGRSGRFG 371
Query: 451 RFG 453
G
Sbjct: 372 HLG 374
Score = 307 (113.1 bits), Expect = 3.5e-25, P = 3.5e-25
Identities = 81/266 (30%), Positives = 140/266 (52%)
Query: 226 VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQV 285
+++GTPG + S S V DEAD +L F +++ + QV
Sbjct: 160 ILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPE-FTPVIEQLLSFHPKDR---QV 215
Query: 286 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 345
+LFSATF VK+F R +++ ++ + +EL+L + QY + +E KV + +
Sbjct: 216 MLFSATFPMIVKSFKDRHMRNPYEINLM-DELTLRGITQYYAFV-EEKQKVHCLNTLFSK 273
Query: 346 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405
L ++ Q+IIF + N L K + + GY +Q+ R+++ +F++G+ + L+
Sbjct: 274 L--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLV 331
Query: 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465
+D+L RG D Q VN+++N+D P + E YLHRIGR+GRFG G+ NL+ +
Sbjct: 332 CSDLLTRGIDIQAVNVVINFDFP--------KNAETYLHRIGRSGRFGHLGLAINLI-NW 382
Query: 466 DDMIIMEKIERYFDIKVTEV-RNSDE 490
DD + KIE+ ++ + +N D+
Sbjct: 383 DDRFNLYKIEQELGTEIQPIPQNIDK 408
>UNIPROTKB|O00148 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006406 "mRNA export from
nucleus" evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U90426 EMBL:AK026614 EMBL:BC001009
IPI:IPI00940237 RefSeq:NP_005795.2 UniGene:Hs.311609
ProteinModelPortal:O00148 SMR:O00148 IntAct:O00148
MINT:MINT-1035991 STRING:O00148 PhosphoSite:O00148 PaxDb:O00148
PeptideAtlas:O00148 PRIDE:O00148 DNASU:10212
Ensembl:ENST00000242776 GeneID:10212 KEGG:hsa:10212 UCSC:uc002myo.3
CTD:10212 GeneCards:GC19M014521 HGNC:HGNC:17821 neXtProt:NX_O00148
PharmGKB:PA27226 HOVERGEN:HBG107334 InParanoid:O00148 KO:K13182
OrthoDB:EOG4XSKPX PhylomeDB:O00148 ChiTaRS:DDX39A GenomeRNAi:10212
NextBio:38664 ArrayExpress:O00148 Bgee:O00148 CleanEx:HS_DDX39
Genevestigator:O00148 GermOnline:ENSG00000123136 Uniprot:O00148
Length = 427
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 127/433 (29%), Positives = 217/433 (50%)
Query: 59 AELDVEGLTID-ESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYV 117
AE DVE +D + ++ + E+ + K G ++ F D L PELL+ + V
Sbjct: 2 AEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAI-V 60
Query: 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177
+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P L +
Sbjct: 61 DCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 178 CPTRELAIQNLEVLRKMGKH---TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 234
C TRELA Q + + K+ ++ + + + K P VV+GTPG I
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP---HVVVGTPGRI 175
Query: 235 KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATFN 293
+ + +K V DE D ML++ R D +++I R + H Q ++FSAT +
Sbjct: 176 LALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRD----VQEIFRLTPHEKQCMMFSATLS 231
Query: 294 ETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQ 352
+ ++ + ++D ++FV E +L+L ++QY V D K + D + L + Q
Sbjct: 232 KDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS-EKNRKLFDLLDVL--EFNQ 288
Query: 353 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412
IIFV++ AL + L + + I QEER ++FKD ++L++T++ R
Sbjct: 289 VIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348
Query: 413 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472
G D ++VN++ NYD P D + YLHR+ RAGRFG KG+ + D +D I+
Sbjct: 349 GMDIERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 400
Query: 473 KIERYFDIKVTEV 485
++ F++ V E+
Sbjct: 401 DVQDRFEVNVAEL 413
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 126/389 (32%), Positives = 203/389 (52%)
Query: 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156
TS+ F L+L +L+K L + +++ + IQA +LP +L +++I +A+ GSGKT
Sbjct: 7 TSSLAFSSLSLKQDLVKNLS-SLGYEQMTPIQAKTLPELLKG--KDVIGEAKTGSGKTAA 63
Query: 157 FVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVP 215
F L +L++++ Q++ ICPTRELA Q + LRK+ + GI + + T + P
Sbjct: 64 FGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLAR--GIHNIKILTLCGGTPFGP 121
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275
A V++GTPG +++ + L L +LV DEAD ML E GF+ I
Sbjct: 122 QIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRML-EMGFQAALDNI--- 177
Query: 276 IERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV-KKEELSLESVKQYKVYCPDELA 334
+ R+ Q LLFSATF + +K+ I+ D + + E+ S S K +KV D+
Sbjct: 178 VGRTPLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQKFFKVGNDDDRL 237
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
+ R+ LG ++ T IF TK + AL G+ V + G Q +RD+ +
Sbjct: 238 DAL----RLLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLL 293
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
F + +L++TDV ARG D ++L++NY H+ D EV++HRIGR GR G
Sbjct: 294 RFANKSASILVATDVAARGLDIDSLDLVINY--------HIARDSEVHVHRIGRTGRAGS 345
Query: 455 KGVVFNLLMDGDDMIIMEKIERYFDIKVT 483
G+ ++L D + + +E Y + +T
Sbjct: 346 TGIAYSLFSDKESYKV-GLLEDYLEAVIT 373
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 126/389 (32%), Positives = 203/389 (52%)
Query: 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156
TS+ F L+L +L+K L + +++ + IQA +LP +L +++I +A+ GSGKT
Sbjct: 7 TSSLAFSSLSLKQDLVKNLS-SLGYEQMTPIQAKTLPELLKG--KDVIGEAKTGSGKTAA 63
Query: 157 FVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS-ECAVPTDSTNYVP 215
F L +L++++ Q++ ICPTRELA Q + LRK+ + GI + + T + P
Sbjct: 64 FGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLAR--GIHNIKILTLCGGTPFGP 121
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275
A V++GTPG +++ + L L +LV DEAD ML E GF+ I
Sbjct: 122 QIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRML-EMGFQAALDNI--- 177
Query: 276 IERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV-KKEELSLESVKQYKVYCPDELA 334
+ R+ Q LLFSATF + +K+ I+ D + + E+ S S K +KV D+
Sbjct: 178 VGRTPLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQKFFKVGNDDDRL 237
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
+ R+ LG ++ T IF TK + AL G+ V + G Q +RD+ +
Sbjct: 238 DAL----RLLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLL 293
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
F + +L++TDV ARG D ++L++NY H+ D EV++HRIGR GR G
Sbjct: 294 RFANKSASILVATDVAARGLDIDSLDLVINY--------HIARDSEVHVHRIGRTGRAGS 345
Query: 455 KGVVFNLLMDGDDMIIMEKIERYFDIKVT 483
G+ ++L D + + +E Y + +T
Sbjct: 346 TGIAYSLFSDKESYKV-GLLEDYLEAVIT 373
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 119/364 (32%), Positives = 194/364 (53%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+D NLS +L+K + M F++ + IQA ++P+ L+ +++I QA+ G+GKT F +
Sbjct: 4 TFQDFNLSSDLMKAIN-RMGFEEATPIQAQTIPLGLSN--KDVIGQAQTGTGKTAAFGIP 60
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPISK 218
++ +++P QA+ I PTRELAIQ E L K+G K + D + K
Sbjct: 61 LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYG-GQDIGRQIRALK 119
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG + ++ + + + + +V DEAD ML+ GF DD I+ ++
Sbjct: 120 KNP---NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLN-MGFIDDIESILSNVP- 174
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
S H Q LLFSAT +K R + + + VK +E+++ +++Q+ Y + K
Sbjct: 175 -SEH-QTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQF--YLEVQERKKFD 230
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
R+ ++ + I+F RTK L +AL GY I G Q +R +++FK+
Sbjct: 231 TLTRLLDI-QSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKE 289
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+ G+
Sbjct: 290 GAIEVLVATDVAARGLDISGVTHVYNFDVP--------QDPESYVHRIGRTGRAGKTGMA 341
Query: 459 FNLL 462
+
Sbjct: 342 MTFI 345
>WB|WBGene00001840 [details] [associations]
symbol:hel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0008380
GO:GO:0006397 GO:GO:0010171 GO:GO:0005681 GO:GO:0003723
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:NAENPAI EMBL:Z54327 EMBL:U08102
PIR:T19484 RefSeq:NP_001021985.1 ProteinModelPortal:Q18212
SMR:Q18212 STRING:Q18212 PaxDb:Q18212 PRIDE:Q18212
EnsemblMetazoa:C26D10.2a.1 EnsemblMetazoa:C26D10.2a.2 GeneID:174333
KEGG:cel:CELE_C26D10.2 UCSC:C26D10.2a CTD:174333 WormBase:C26D10.2a
InParanoid:Q18212 NextBio:883586 ArrayExpress:Q18212 GO:GO:0001703
Uniprot:Q18212
Length = 425
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 119/399 (29%), Positives = 201/399 (50%)
Query: 90 TTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARN 149
T G ++ F D L PE+L+ + + F+ PS++Q +P + +++ QA++
Sbjct: 31 TKGTYASIHSSGFRDFLLKPEILRAIG-DCGFEHPSEVQHECIPQAILG--MDVVCQAKS 87
Query: 150 GSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPT 208
G GKT FV+ L +++P +C+C TRELA Q + + K+ G+ + AV
Sbjct: 88 GMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGV--KVAVFF 145
Query: 209 DSTNYVPISKRPPVTA-QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD 267
+R +V+GTPG + + KL ++K V DE D M+ +A R
Sbjct: 146 GGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRR 205
Query: 268 DSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYK 326
D I+K + QV++FSAT + ++ R ++D +++V E +L+L ++Q+
Sbjct: 206 DVQEIVKMTPQQK---QVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHY 262
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
V E K + + + L + Q +IFV+ ALH+ L + + I Q
Sbjct: 263 VKLK-EAEKNRRLLNLLDAL--EFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQ 319
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
EER + FKD ++L++TD+ RG D ++VN++ NYD P D + YLHR+
Sbjct: 320 EERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMP--------EDSDSYLHRV 371
Query: 447 GRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
RAGRFG KG+ + D +D + ++ FDI +TE+
Sbjct: 372 ARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISITEL 410
>ZFIN|ZDB-GENE-040426-1259 [details] [associations]
symbol:ddx39b "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39B" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-1259 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX511233
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 KO:K12812
OMA:NNPLINC EMBL:FP085397 EMBL:BC055240 IPI:IPI00502330
RefSeq:NP_957237.1 UniGene:Dr.5423 SMR:Q7SXU7 STRING:Q7SXU7
Ensembl:ENSDART00000052355 GeneID:393917 KEGG:dre:393917 CTD:393917
InParanoid:Q7SXU7 NextBio:20814893 Uniprot:Q7SXU7
Length = 435
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 130/442 (29%), Positives = 218/442 (49%)
Query: 52 TSEDKSTAELDVEGLTIDESKKVNKFLDEAEDS-SI-KTVTTGDTPYTSATTFEDLNLSP 109
T D LD E +D + L ++ SI K G ++ F D L P
Sbjct: 2 TENDVDNELLDYEEDEVDAGGAGDAGLGHSDGIISIRKEGVKGSYVSIHSSGFRDFLLKP 61
Query: 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL 169
ELL+ + V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P
Sbjct: 62 ELLRAI-VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVT 118
Query: 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP----ISKRPPVTAQ 225
L +C TRELA Q + + K+ + + AV + + K P
Sbjct: 119 GQVSVLVMCHTRELAFQISKEYERFSKYMP-SVKVAVFFGGLSIKKDEEVLKKESP---H 174
Query: 226 VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQ 284
VV+GTPG I K L +K + DE D ML++ R D +++I R + H Q
Sbjct: 175 VVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRD----VQEIFRMTPHEKQ 230
Query: 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRI 343
V++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D K + D +
Sbjct: 231 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-EKNRKLFDLL 289
Query: 344 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 403
L + Q +IFV++ AL + L + + I A Q+ER ++FKD ++
Sbjct: 290 DVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRI 347
Query: 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463
L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG KG+ +
Sbjct: 348 LVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVS 399
Query: 464 DGDDMIIMEKIERYFDIKVTEV 485
D +D + ++ F++ ++E+
Sbjct: 400 DENDARTLNDVQDRFEVNISEL 421
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 121/365 (33%), Positives = 191/365 (52%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF++L LS E++K + M F++ + IQA ++P+ L +++I QA+ G+GKT F +
Sbjct: 2 TTFQELGLSQEVMKAIE-RMGFEETTPIQAKTIPLSLQN--KDVIGQAQTGTGKTAAFGI 58
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPIS 217
++ +V+ A QAL + PTRELAIQ E L K+G K + D +
Sbjct: 59 PIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYG-GQDIERQIRAL 117
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277
K+ P V++GTPG I ++ L + +V DEAD ML+ GF +D I+ +
Sbjct: 118 KKHP---HVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLN-MGFIEDIEAILSHVP 173
Query: 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337
Q LLFSAT + ++ R + + + VK +E+++ +++QY Y K
Sbjct: 174 AER---QTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQY--YLEVHEKKKF 228
Query: 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 397
I R+ ++ + I+F RTK L +AL GY I G Q +R ++++FK
Sbjct: 229 DILTRLLDI-QAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFK 287
Query: 398 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457
+G ++L++TDV ARG D V + N+D P D E Y+HRIGR GR G+ GV
Sbjct: 288 EGAIEILVATDVAARGLDISGVTHVYNFDIP--------QDPESYVHRIGRTGRAGKTGV 339
Query: 458 VFNLL 462
+
Sbjct: 340 AMTFV 344
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 125/369 (33%), Positives = 189/369 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L L ELL+ L M + + + IQA SLP IL ++I Q + GSGKT F LG+
Sbjct: 3 FSTLKLKTELLENLS-SMGYNEMTPIQAQSLPAILAG--EDVIGQGKTGSGKTAAFGLGL 59
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L+++D Q L +CPTRELA Q + +R + + GI + V T VP+ +
Sbjct: 60 LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLAR--GIHN-VKVLT-LCGGVPMGPQIG 115
Query: 222 VT---AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
A +++GTPG I + +L S L +LV DEAD ML E GF+ I IE+
Sbjct: 116 SLEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRML-EMGFQPQLDAI---IEQ 171
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL-SLESVKQYKVYCPDELAKVM 337
S Q LLFSATF E +++ +I+ YN + VK +++Q+ D+ +++
Sbjct: 172 SPRERQTLLFSATFPEQIQSIAKQIM--YNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQ 229
Query: 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 397
++ + E K ++F TK + L+ G+ V + G Q +RD+ + +F
Sbjct: 230 ALQLLLLE--HKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFA 287
Query: 398 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457
+ VL++TDV ARG D ++ + NY H+ D EV++HRIGR GR G KG
Sbjct: 288 NKSACVLVATDVAARGLDIDALDAVFNY--------HVAYDTEVHIHRIGRTGRAGSKGA 339
Query: 458 VFNLLMDGD 466
+ D D
Sbjct: 340 AYTFYNDQD 348
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 125/369 (33%), Positives = 189/369 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L L ELL+ L M + + + IQA SLP IL ++I Q + GSGKT F LG+
Sbjct: 3 FSTLKLKTELLENLS-SMGYNEMTPIQAQSLPAILAG--EDVIGQGKTGSGKTAAFGLGL 59
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L+++D Q L +CPTRELA Q + +R + + GI + V T VP+ +
Sbjct: 60 LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLAR--GIHN-VKVLT-LCGGVPMGPQIG 115
Query: 222 VT---AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
A +++GTPG I + +L S L +LV DEAD ML E GF+ I IE+
Sbjct: 116 SLEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRML-EMGFQPQLDAI---IEQ 171
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL-SLESVKQYKVYCPDELAKVM 337
S Q LLFSATF E +++ +I+ YN + VK +++Q+ D+ +++
Sbjct: 172 SPRERQTLLFSATFPEQIQSIAKQIM--YNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQ 229
Query: 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 397
++ + E K ++F TK + L+ G+ V + G Q +RD+ + +F
Sbjct: 230 ALQLLLLE--HKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFA 287
Query: 398 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457
+ VL++TDV ARG D ++ + NY H+ D EV++HRIGR GR G KG
Sbjct: 288 NKSACVLVATDVAARGLDIDALDAVFNY--------HVAYDTEVHIHRIGRTGRAGSKGA 339
Query: 458 VFNLLMDGD 466
+ D D
Sbjct: 340 AYTFYNDQD 348
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 120/364 (32%), Positives = 185/364 (50%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T T FED L ELL G++ E F++PS IQ S+P+ L+ R+++A+A+NG
Sbjct: 35 TEDVTKTRGTEFEDYYLKRELLMGIF-EAGFERPSPIQEESIPIALSG--RDILARAKNG 91
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT FV+ L +VD Q L + PTRELA+Q +V + +GKH + + V T
Sbjct: 92 TGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNV--KVMVTTGG 149
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
T R T +V+GTPG + FS V DEAD +L F
Sbjct: 150 TTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPE-FTPIIE 208
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYKVYC 329
+++ ++ Q+ L+SATF VKNF+ + + K Y + +EL+L V QY +
Sbjct: 209 QLLSYFPKNR---QISLYSATFPLIVKNFMDKHLNKPYEINLM--DELTLRGVTQYYAFV 263
Query: 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 389
DE KV + +L ++ Q+IIF + N L K + + GY +Q R
Sbjct: 264 -DESQKVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHR 320
Query: 390 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 449
+++ F++G+ + L+ +D+L RG D Q VN+++N+D P +L + R GR
Sbjct: 321 NRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHR-----IGRSGRF 375
Query: 450 GRFG 453
G G
Sbjct: 376 GHRG 379
Score = 294 (108.6 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 77/245 (31%), Positives = 124/245 (50%)
Query: 223 TAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282
T +V+GTPG + FS V DEAD +L F +++ ++
Sbjct: 162 TVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPE-FTPIIEQLLSYFPKNR-- 218
Query: 283 CQVLLFSATFNETVKNFVTR-IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 341
Q+ L+SATF VKNF+ + + K Y + +EL+L V QY + DE KV +
Sbjct: 219 -QISLYSATFPLIVKNFMDKHLNKPYEINLM--DELTLRGVTQYYAFV-DESQKVHCLNT 274
Query: 342 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401
+L ++ Q+IIF + N L K + + GY +Q R+++ F++G+
Sbjct: 275 LFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVC 332
Query: 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461
+ L+ +D+L RG D Q VN+++N+D P + E YLHRIGR+GRFG +G+ +
Sbjct: 333 RNLVCSDLLTRGIDIQAVNVVINFDFP--------KNAETYLHRIGRSGRFGHRGLAISF 384
Query: 462 LMDGD 466
+ D
Sbjct: 385 ISWAD 389
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 440 (159.9 bits), Expect = 3.5e-41, P = 3.5e-41
Identities = 125/395 (31%), Positives = 201/395 (50%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
+A F DL L+ +L L EM F P+ IQA ++P++L R+ + +A+ G+GKT F
Sbjct: 24 TAIQFSDLALNSAILSAL-TEMGFVSPTPIQAAAIPVLLEG--RDALGKAQTGTGKTAAF 80
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
L +L++++ + PQA+ + PTRELAIQ ++ +G++ + + +
Sbjct: 81 SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEI-YGGASILDQM 139
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277
+ A +V+GTPG +K ++ +L + DEAD ML + GF DD IM+
Sbjct: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEML-KMGFVDDVTWIMEQAP 198
Query: 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ-YKVYCPDELAKV 336
S+ Q +LFSAT VK V R +++ + V ++ V+Q Y V E +
Sbjct: 199 ESA---QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEA 255
Query: 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396
M R+ E E+ +I+FVRT+ L L G++ + G Q R++ V
Sbjct: 256 MA---RLLET-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHI 311
Query: 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456
K G+ +L++TDV+ARG D ++ + NYD P D E Y+HRIGR GR GRKG
Sbjct: 312 KQGVIDILVATDVVARGLDVPRITHVYNYDIPF--------DVESYIHRIGRTGRAGRKG 363
Query: 457 VVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
LL+ + + ++ IER + E++ D
Sbjct: 364 KAI-LLVRTNQIRMLRTIERVTRSSMEEIQLPHRD 397
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 440 (159.9 bits), Expect = 3.5e-41, P = 3.5e-41
Identities = 125/395 (31%), Positives = 201/395 (50%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
+A F DL L+ +L L EM F P+ IQA ++P++L R+ + +A+ G+GKT F
Sbjct: 24 TAIQFSDLALNSAILSAL-TEMGFVSPTPIQAAAIPVLLEG--RDALGKAQTGTGKTAAF 80
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
L +L++++ + PQA+ + PTRELAIQ ++ +G++ + + +
Sbjct: 81 SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEI-YGGASILDQM 139
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277
+ A +V+GTPG +K ++ +L + DEAD ML + GF DD IM+
Sbjct: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEML-KMGFVDDVTWIMEQAP 198
Query: 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ-YKVYCPDELAKV 336
S+ Q +LFSAT VK V R +++ + V ++ V+Q Y V E +
Sbjct: 199 ESA---QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEA 255
Query: 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396
M R+ E E+ +I+FVRT+ L L G++ + G Q R++ V
Sbjct: 256 MA---RLLET-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHI 311
Query: 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456
K G+ +L++TDV+ARG D ++ + NYD P D E Y+HRIGR GR GRKG
Sbjct: 312 KQGVIDILVATDVVARGLDVPRITHVYNYDIPF--------DVESYIHRIGRTGRAGRKG 363
Query: 457 VVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
LL+ + + ++ IER + E++ D
Sbjct: 364 KAI-LLVRTNQIRMLRTIERVTRSSMEEIQLPHRD 397
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 121/389 (31%), Positives = 198/389 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF DL L P LL+ + EM F +P+++QA ++P L R+++A A G+GKT FV+
Sbjct: 4 TFADLELDPILLEAIE-EMGFSRPTQVQAEAIPQALDG--RDVLASAPTGTGKTAAFVIP 60
Query: 161 MLSRV-D-PNLKAPQA--LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
L + D P KA A L + PTRELA+Q E + + K+T + T Y
Sbjct: 61 ALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLN--IFTITGGVQYQEH 118
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
+ T +V+ TPG + +++ A++ ++ L+ DEAD MLD GF R+ +
Sbjct: 119 ADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLD-MGFGPTVDRLSTEC 177
Query: 277 ERSSGHCQVLLFSATFN-ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 335
Q LLFSAT V+ F ++KD + + + + Q+ D K
Sbjct: 178 RWRK---QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHK 234
Query: 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395
V +++ + E E+ +I+F++T+ + L L+ I G Q+ R+ +
Sbjct: 235 VELLKKILTEQAER---SIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291
Query: 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 455
F++G +L++TDV ARG D ++ ++N+D P +VYLHRIGR GR G+K
Sbjct: 292 FREGDVNILLATDVAARGIDVPDISHVINFDLP--------RSADVYLHRIGRTGRAGKK 343
Query: 456 GVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
G+ +L+ + D +M ++ERY +V E
Sbjct: 344 GIAISLV-EAHDQPMMARVERYIKEEVKE 371
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 121/389 (31%), Positives = 198/389 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF DL L P LL+ + EM F +P+++QA ++P L R+++A A G+GKT FV+
Sbjct: 4 TFADLELDPILLEAIE-EMGFSRPTQVQAEAIPQALDG--RDVLASAPTGTGKTAAFVIP 60
Query: 161 MLSRV-D-PNLKAPQA--LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
L + D P KA A L + PTRELA+Q E + + K+T + T Y
Sbjct: 61 ALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLN--IFTITGGVQYQEH 118
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
+ T +V+ TPG + +++ A++ ++ L+ DEAD MLD GF R+ +
Sbjct: 119 ADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLD-MGFGPTVDRLSTEC 177
Query: 277 ERSSGHCQVLLFSATFN-ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 335
Q LLFSAT V+ F ++KD + + + + Q+ D K
Sbjct: 178 RWRK---QTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHK 234
Query: 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395
V +++ + E E+ +I+F++T+ + L L+ I G Q+ R+ +
Sbjct: 235 VELLKKILTEQAER---SIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISR 291
Query: 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 455
F++G +L++TDV ARG D ++ ++N+D P +VYLHRIGR GR G+K
Sbjct: 292 FREGDVNILLATDVAARGIDVPDISHVINFDLP--------RSADVYLHRIGRTGRAGKK 343
Query: 456 GVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
G+ +L+ + D +M ++ERY +V E
Sbjct: 344 GIAISLV-EAHDQPMMARVERYIKEEVKE 371
>UNIPROTKB|F1SBP3 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 OMA:VEDYEHY GeneTree:ENSGT00530000062880 EMBL:CU466482
RefSeq:XP_001928579.1 UniGene:Ssc.6364 Ensembl:ENSSSCT00000007430
GeneID:100152786 KEGG:ssc:100152786 Uniprot:F1SBP3
Length = 832
Score = 417 (151.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 133/406 (32%), Positives = 202/406 (49%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
L A D TGD FE L LS +L+GL F++PS +Q ++P L
Sbjct: 47 LRTAHDVGGPRTRTGDVLLAEPADFESLLLSRPVLEGLRAA-GFERPSPVQLKAIP--LG 103
Query: 138 PPYRNLIAQARNGSGKTTCF-VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG- 195
+LI QA++G+GKT F + + S V NL Q L + PTRE+A+Q V+ +G
Sbjct: 104 RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-QILILAPTREIAVQIHSVITAIGV 162
Query: 196 KHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253
K G+ EC V T P+S K + +G+PG IK+ + L +++ +
Sbjct: 163 KMEGL--ECHVFIGGT---PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 217
Query: 254 DEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313
DEAD +L+E F++ I + S Q+L SAT+ E + N +T+ +++ + +
Sbjct: 218 DEADKLLEEGSFQEQINWIYSSLPASK---QMLAVSATYPEFLANALTKYMREPTFVRLN 274
Query: 314 KEELSLESVKQY-KVYCPDELA-KVMVIR-DRIFELGEKM--GQTIIFVRTKNSASALHK 368
+ SL +KQY KV LA K+ + + EL K+ Q ++F + A L
Sbjct: 275 SSDPSLIGLKQYYKVVNSYPLAHKIFEEKAQHLQELFSKIPFNQALVFSNLHSRAQHLAD 334
Query: 369 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428
L G+ I G Q +R + + K +VLISTD+ +RG D ++VNL+VN D P
Sbjct: 335 ILSSKGFPAVCISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVP 394
Query: 429 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI 474
+ D E Y+HRIGRAGRFG G+ G++ +M KI
Sbjct: 395 L--------DWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMKI 432
Score = 52 (23.4 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 2 ADATENPAAPATLEPLPSTEP 22
A TE PAA AT+EP EP
Sbjct: 3 AATTEAPAALATVEPAMPAEP 23
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 134/393 (34%), Positives = 204/393 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF L L LL L E+ P+ IQ ++P +L ++++A A+ G+GKT F L
Sbjct: 7 TFSQLGLDSRLLNTLS-ELGIANPTPIQQQAIPHVLQG--KDVLAGAQTGTGKTAAFGLP 63
Query: 161 MLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213
++ R + N K +AL + PTRELA Q L+ L+ K T + AV ++
Sbjct: 64 LIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKI-VAVYGGTSMK 122
Query: 214 VPISK-RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRI 272
V ++ R V ++I TPG + K L ++++LV DEAD MLD GF D R+
Sbjct: 123 VQLNHLRGGV--DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLD-MGFMPDLQRV 179
Query: 273 MKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 332
++ R S Q L FSATF+ +K RI++D ++ V + E+V+Q VY D+
Sbjct: 180 LR---RLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQM-VYPVDK 235
Query: 333 LAKVMVIRDRIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
K ++ + +G K Q ++F +T+ + AL + LK G + +I G Q R K
Sbjct: 236 KRKRELLS---YLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQK 292
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+ +FK G + LI+TDV ARG D Q+ +VNYD P K E Y+HRIGR GR
Sbjct: 293 ALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFK--------AEDYVHRIGRTGR 344
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
G G+ +LL D+ +E IER + ++ +
Sbjct: 345 AGLAGLAVSLLSH-DEQPQLEAIERLLNTRLPQ 376
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 134/393 (34%), Positives = 204/393 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF L L LL L E+ P+ IQ ++P +L ++++A A+ G+GKT F L
Sbjct: 7 TFSQLGLDSRLLNTLS-ELGIANPTPIQQQAIPHVLQG--KDVLAGAQTGTGKTAAFGLP 63
Query: 161 MLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213
++ R + N K +AL + PTRELA Q L+ L+ K T + AV ++
Sbjct: 64 LIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKI-VAVYGGTSMK 122
Query: 214 VPISK-RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRI 272
V ++ R V ++I TPG + K L ++++LV DEAD MLD GF D R+
Sbjct: 123 VQLNHLRGGV--DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLD-MGFMPDLQRV 179
Query: 273 MKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 332
++ R S Q L FSATF+ +K RI++D ++ V + E+V+Q VY D+
Sbjct: 180 LR---RLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQM-VYPVDK 235
Query: 333 LAKVMVIRDRIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
K ++ + +G K Q ++F +T+ + AL + LK G + +I G Q R K
Sbjct: 236 KRKRELLS---YLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQK 292
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+ +FK G + LI+TDV ARG D Q+ +VNYD P K E Y+HRIGR GR
Sbjct: 293 ALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFK--------AEDYVHRIGRTGR 344
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
G G+ +LL D+ +E IER + ++ +
Sbjct: 345 AGLAGLAVSLLSH-DEQPQLEAIERLLNTRLPQ 376
>UNIPROTKB|J3KT12 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1
ProteinModelPortal:J3KT12 Ensembl:ENST00000582746 Uniprot:J3KT12
Length = 341
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 109/314 (34%), Positives = 181/314 (57%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAIS-LPMILTPPYRNLIAQARNGSGKTTCFVL 159
+F+D+NLS LL+G+Y F+KPS IQ + LP I Y ++IAQA++G+GKT F +
Sbjct: 33 SFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCI--KGY-DVIAQAQSGTGKTATFAI 88
Query: 160 GMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY-VPISK 218
+L +++ +LKA QAL + PTRELA Q +V+ +G + G + C TN + K
Sbjct: 89 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHACIGGTNVRAEVQK 146
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+++GTPG + ++ + L +K+ V DEAD ML GF+D +I ++
Sbjct: 147 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKD---QIYDIFQK 202
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
+ + QV+L SAT V + ++D ++ VKKEEL+LE ++Q+ + E K+
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 262
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ D ++E + Q +IF+ T+ L + + + V+ + G Q+ERD I++EF+
Sbjct: 263 LCD-LYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 320
Query: 399 GLTQVLISTDVLAR 412
G ++VLI+TD+L R
Sbjct: 321 GSSRVLITTDLLNR 334
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 115/363 (31%), Positives = 186/363 (51%)
Query: 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNG 150
T D T FE+ L +LL G++ E F+KPS IQ S+P+ LT R+++A+A+NG
Sbjct: 38 TEDVTNTKGLEFENFGLKRDLLMGIF-EAGFEKPSPIQEESIPVALTG--RDILARAKNG 94
Query: 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS 210
+GKT FV+ L ++P + Q L + PTRELA+Q +V + +GKH GI V T
Sbjct: 95 TGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGIN--VMVTTGG 152
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
T R +V+GTPG I S + + DEAD +L F
Sbjct: 153 TTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLS-IEFTPVIE 211
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
++++ + QV+LFSATF +VK F + + + ++ + +EL+L + QY +
Sbjct: 212 QLLQFHPKDR---QVMLFSATFPISVKEFSDKNMTNPYEINLM-DELTLRGITQYYAFV- 266
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
+E KV + +L ++ Q+IIF + N L K + + GY Q+ R+
Sbjct: 267 EEKQKVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARN 324
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
++ +F++G+ + L+ +D+L RG D Q VN+++N+D P +L + R GR G
Sbjct: 325 RVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHR-----IGRSGRYG 379
Query: 451 RFG 453
G
Sbjct: 380 HLG 382
Score = 285 (105.4 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 76/251 (30%), Positives = 130/251 (51%)
Query: 226 VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQV 285
+V+GTPG I S + + DEAD +L F ++++ + QV
Sbjct: 168 IVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLS-IEFTPVIEQLLQFHPKDR---QV 223
Query: 286 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE 345
+LFSATF +VK F + + + ++ + +EL+L + QY + +E KV + +
Sbjct: 224 MLFSATFPISVKEFSDKNMTNPYEINLM-DELTLRGITQYYAFV-EEKQKVHCLNTLFSK 281
Query: 346 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405
L ++ Q+IIF + N L K + + GY Q+ R+++ +F++G+ + L+
Sbjct: 282 L--QINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNGVCRNLV 339
Query: 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465
+D+L RG D Q VN+++N+D P + E YLHRIGR+GR+G G+ NL+
Sbjct: 340 CSDLLTRGIDIQAVNVVINFDFP--------KNAETYLHRIGRSGRYGHLGLAINLI-SW 390
Query: 466 DDMIIMEKIER 476
+D + IER
Sbjct: 391 EDRFNLYNIER 401
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 126/386 (32%), Positives = 196/386 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
DE+ K L A+D KT DT FED L +LL G++ E ++KPS IQ
Sbjct: 16 DENWKAGLNLP-AKDRRFKTADVTDT---KGVEFEDFCLGRDLLMGIF-EKGWEKPSPIQ 70
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+ + LT ++++A+A+NG+GKT + + ++ ++ P LKA QA+ I PTRELA+Q
Sbjct: 71 EASIGVALTG--QDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTS 128
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH I + V T T+ R T +VI TPG I M
Sbjct: 129 QICVELSKH--IQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHC 186
Query: 249 KILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIV-KDY 307
K LV DEAD +L + F+ R++ + + QV+L+SATF TV +F+ + + K Y
Sbjct: 187 KTLVLDEADKLLSQ-DFQGILDRLINFLPKER---QVMLYSATFPNTVTSFMQKHMHKPY 242
Query: 308 NQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH 367
+ EEL+L V QY + E KV + +L ++ Q+IIF + L
Sbjct: 243 EINLM--EELTLLGVTQYYAFV-QEKQKVHCLNTLFRKL--QINQSIIFCNSTQRVELLA 297
Query: 368 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP 427
K + + GY I Q R+++ +F+ G + L+ +D+L RG D Q VN+++N+D
Sbjct: 298 KKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDF 357
Query: 428 PVKHGKHLEPDCEVYLHRIGRAGRFG 453
P +L + R GR G G
Sbjct: 358 PRNAETYLHR-----IGRSGRFGHLG 378
Score = 301 (111.0 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 85/264 (32%), Positives = 133/264 (50%)
Query: 223 TAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282
T +VI TPG I M K LV DEAD +L + F+ R++ + +
Sbjct: 161 TVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQ-DFQGILDRLINFLPKER-- 217
Query: 283 CQVLLFSATFNETVKNFVTRIV-KDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 341
QV+L+SATF TV +F+ + + K Y + EEL+L V QY + E KV +
Sbjct: 218 -QVMLYSATFPNTVTSFMQKHMHKPYEINLM--EELTLLGVTQYYAFV-QEKQKVHCLNT 273
Query: 342 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401
+L ++ Q+IIF + L K + + GY I Q R+++ +F+ G
Sbjct: 274 LFRKL--QINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNC 331
Query: 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461
+ L+ +D+L RG D Q VN+++N+D P + E YLHRIGR+GRFG GV NL
Sbjct: 332 RNLVCSDLLTRGIDIQAVNVVINFDFP--------RNAETYLHRIGRSGRFGHLGVAINL 383
Query: 462 LMDGDDMIIMEKIERYFDIKVTEV 485
+ +D + +IE+ ++ +
Sbjct: 384 ITY-EDRHTLRRIEQELRTRIEPI 406
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 126/386 (32%), Positives = 196/386 (50%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
DE+ K L A+D KT DT FED L +LL G++ E ++KPS IQ
Sbjct: 16 DENWKAGLNLP-AKDRRFKTADVTDT---KGVEFEDFCLGRDLLMGIF-EKGWEKPSPIQ 70
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
S+ + LT ++++A+A+NG+GKT + + ++ ++ P LKA QA+ I PTRELA+Q
Sbjct: 71 EASIGVALTG--QDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTS 128
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248
++ ++ KH I + V T T+ R T +VI TPG I M
Sbjct: 129 QICVELSKH--IQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHC 186
Query: 249 KILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIV-KDY 307
K LV DEAD +L + F+ R++ + + QV+L+SATF TV +F+ + + K Y
Sbjct: 187 KTLVLDEADKLLSQ-DFQGILDRLINFLPKER---QVMLYSATFPNTVTSFMQKHMHKPY 242
Query: 308 NQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH 367
+ EEL+L V QY + E KV + +L ++ Q+IIF + L
Sbjct: 243 EINLM--EELTLLGVTQYYAFV-QEKQKVHCLNTLFRKL--QINQSIIFCNSTQRVELLA 297
Query: 368 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP 427
K + + GY I Q R+++ +F+ G + L+ +D+L RG D Q VN+++N+D
Sbjct: 298 KKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDF 357
Query: 428 PVKHGKHLEPDCEVYLHRIGRAGRFG 453
P +L + R GR G G
Sbjct: 358 PRNAETYLHR-----IGRSGRFGHLG 378
Score = 301 (111.0 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 85/264 (32%), Positives = 133/264 (50%)
Query: 223 TAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282
T +VI TPG I M K LV DEAD +L + F+ R++ + +
Sbjct: 161 TVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQ-DFQGILDRLINFLPKER-- 217
Query: 283 CQVLLFSATFNETVKNFVTRIV-KDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 341
QV+L+SATF TV +F+ + + K Y + EEL+L V QY + E KV +
Sbjct: 218 -QVMLYSATFPNTVTSFMQKHMHKPYEINLM--EELTLLGVTQYYAFV-QEKQKVHCLNT 273
Query: 342 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401
+L ++ Q+IIF + L K + + GY I Q R+++ +F+ G
Sbjct: 274 LFRKL--QINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNC 331
Query: 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461
+ L+ +D+L RG D Q VN+++N+D P + E YLHRIGR+GRFG GV NL
Sbjct: 332 RNLVCSDLLTRGIDIQAVNVVINFDFP--------RNAETYLHRIGRSGRFGHLGVAINL 383
Query: 462 LMDGDDMIIMEKIERYFDIKVTEV 485
+ +D + +IE+ ++ +
Sbjct: 384 ITY-EDRHTLRRIEQELRTRIEPI 406
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 123/388 (31%), Positives = 203/388 (52%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF +L LLK + E + +P++IQ S+P+IL +++A+A+ G+GKT F L
Sbjct: 6 TFSSFSLDSTLLKAI-TESAYDEPTEIQKQSIPLILAK--HDVMARAQTGTGKTAAFALP 62
Query: 161 MLSR---VDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
+L + V P +AL + PTRELA Q + G+ T +T A ST IS
Sbjct: 63 ILQQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKK-QIS 121
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277
+ V ++I TPG + + + + S ++ LV+DEAD MLD GF+++ +I + +
Sbjct: 122 ELK-VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLD-MGFKEEIDQITQYLP 179
Query: 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337
++ Q LLFSATF + + I+ + + + ++ + + V+Q VY D K
Sbjct: 180 KTK---QTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQL-VYGVDADRKRE 235
Query: 338 VIRDRIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396
+ F +G + Q ++F RTK A L K + G + I G Q R+K + EF
Sbjct: 236 LTS---FLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEF 292
Query: 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456
K+G + LI+TDV ARG D + ++ ++NY+ P + E Y+HRIGR R G G
Sbjct: 293 KEGKVRALIATDVAARGIDIKGLSHVINYELPY--------NAEDYVHRIGRTARAGNSG 344
Query: 457 VVFNLLMDGDDMIIMEKIERYFDIKVTE 484
+ +L+ G++ ++ IE DI++ +
Sbjct: 345 LAVSLVSPGEEWLLTA-IEELLDIQLLQ 371
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 121/376 (32%), Positives = 193/376 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F +L +S E E + + IQ ++P+IL+ +++I QA+ G+GKT FVL +
Sbjct: 7 FLELGIS-ETFNHTLRENGITEATPIQEKAIPVILSG--KDIIGQAKTGTGKTLAFVLPI 63
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L ++DP QAL + PTRELA+Q ++KM + A+ + K
Sbjct: 64 LEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKG 123
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI-ERSS 280
T +V+ TPG + + + + S L +V DEAD ML GF D ++DI + +
Sbjct: 124 NT-HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML-YFGFLYD----IEDILDETP 177
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
G Q +LFSAT + +K R + + + V+ EE+++++++Q + D AK +R
Sbjct: 178 GSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDR-AKPDALR 236
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
+ + + +IF RTK AS L+ LK GY + G Q +R++++K F++
Sbjct: 237 F-VMDRDQPF-LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAK 294
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
Q LI+TDV ARG D V + NYD P D E Y+HRIGR GR G G+
Sbjct: 295 IQYLIATDVAARGLDVDGVTHVFNYDIP--------EDVESYIHRIGRTGRAGGSGLAIT 346
Query: 461 LLMDGDDMIIMEKIER 476
+ D+ + E+IE+
Sbjct: 347 FVAAKDEKHL-EEIEK 361
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 121/376 (32%), Positives = 193/376 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F +L +S E E + + IQ ++P+IL+ +++I QA+ G+GKT FVL +
Sbjct: 7 FLELGIS-ETFNHTLRENGITEATPIQEKAIPVILSG--KDIIGQAKTGTGKTLAFVLPI 63
Query: 162 LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221
L ++DP QAL + PTRELA+Q ++KM + A+ + K
Sbjct: 64 LEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKG 123
Query: 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI-ERSS 280
T +V+ TPG + + + + S L +V DEAD ML GF D ++DI + +
Sbjct: 124 NT-HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML-YFGFLYD----IEDILDETP 177
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
G Q +LFSAT + +K R + + + V+ EE+++++++Q + D AK +R
Sbjct: 178 GSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDR-AKPDALR 236
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
+ + + +IF RTK AS L+ LK GY + G Q +R++++K F++
Sbjct: 237 F-VMDRDQPF-LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAK 294
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
Q LI+TDV ARG D V + NYD P D E Y+HRIGR GR G G+
Sbjct: 295 IQYLIATDVAARGLDVDGVTHVFNYDIP--------EDVESYIHRIGRTGRAGGSGLAIT 346
Query: 461 LLMDGDDMIIMEKIER 476
+ D+ + E+IE+
Sbjct: 347 FVAAKDEKHL-EEIEK 361
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 123/388 (31%), Positives = 203/388 (52%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF +L LLK + E + +P++IQ S+P+IL +++A+A+ G+GKT F L
Sbjct: 6 TFSSFSLDSTLLKAI-TESAYDEPTEIQKQSIPLILAK--HDVMARAQTGTGKTAAFALP 62
Query: 161 MLSR---VDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
+L + V P +AL + PTRELA Q + G+ T +T A ST IS
Sbjct: 63 ILQQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKK-QIS 121
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277
+ V ++I TPG + + + + S ++ LV+DEAD MLD GF+++ +I + +
Sbjct: 122 ELK-VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLD-MGFKEEIDQITQYLP 179
Query: 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337
++ Q LLFSATF + + I+ + + + ++ + + V+Q VY D K
Sbjct: 180 KTK---QTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQL-VYGVDADRKRE 235
Query: 338 VIRDRIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396
+ F +G + Q ++F RTK A L K + G + I G Q R+K + EF
Sbjct: 236 LTS---FLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEF 292
Query: 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456
K+G + LI+TDV ARG D + ++ ++NY+ P + E Y+HRIGR R G G
Sbjct: 293 KEGKVRALIATDVAARGIDIKGLSHVINYELPY--------NAEDYVHRIGRTARAGNSG 344
Query: 457 VVFNLLMDGDDMIIMEKIERYFDIKVTE 484
+ +L+ G++ ++ IE DI++ +
Sbjct: 345 LAVSLVSPGEEWLLTA-IEELLDIQLLQ 371
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 122/371 (32%), Positives = 184/371 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+D N +L+ + ++ F +P+ IQA PM L R+LI A GSGKT ++L
Sbjct: 167 FQDANFPDNILEAI-AKLGFTEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLLPA 223
Query: 162 LSRVD--PNL---KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
L V P L P L + PTRELA+Q E RK G +G+ S C Y
Sbjct: 224 LVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCI-------YGGA 276
Query: 217 SKRPPVT-----AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLR 271
K P + ++VI TPG + + + R+ LV DEAD MLD GF +
Sbjct: 277 PKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLD-MGFEPQIRK 335
Query: 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSL-ESVKQYK--VY 328
I+ I Q LL+SAT+ V+ + ++D + + +L +S+ Q V
Sbjct: 336 IVSQIRPDR---QTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVP 392
Query: 329 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEE 388
P++ +++ + ++ + G K+ +IFV TK + + L+ G+ I G Q E
Sbjct: 393 TPEKYNRLLTLLKQLMD-GSKI---LIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSE 448
Query: 389 RDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 448
RD+++ EFK G + ++ +TDV ARG D + + +VNYD P LE Y+HRIGR
Sbjct: 449 RDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFP----NTLED----YIHRIGR 500
Query: 449 AGRFGRKGVVF 459
GR G KG+ F
Sbjct: 501 TGRAGAKGMAF 511
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 121/384 (31%), Positives = 196/384 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF+D LS +L K + M F++ + IQA ++P+ L +++I QA+ G+GKT F +
Sbjct: 4 TFQDFQLSSDLTKAIK-RMGFEEATPIQAQTIPLGLAN--KDVIGQAQTGTGKTAAFGIP 60
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPISK 218
++ +++P QA+ I PTRELAIQ E L K+G K + D + K
Sbjct: 61 LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYG-GQDIGRQIRALK 119
Query: 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278
+ P +++GTPG + ++ + + + +V DEAD ML+ GF +D I+ ++
Sbjct: 120 KNP---HIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLN-MGFIEDIESILSNVPA 175
Query: 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338
H Q LLFSAT +K R + + + VK +E+++ +++Q+ Y K
Sbjct: 176 E--H-QTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQF--YLEVHERKKFD 230
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
R+ ++ + I+F RTK L +AL GY I G Q +R +++FK
Sbjct: 231 TLTRLLDI-QSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQ 289
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G +VL++TDV ARG D V + N+D P D E Y+HRIGR GR G+ G+
Sbjct: 290 GAIEVLVATDVAARGLDISGVTHVYNFDVP--------QDPESYVHRIGRTGRAGKTGMA 341
Query: 459 FNLLMDGD-DMI--IMEKIERYFD 479
+ + DM+ I + +R D
Sbjct: 342 MTFITPREKDMLRAIEQTTKRKMD 365
>UNIPROTKB|F1MAM8 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 GeneTree:ENSGT00530000062880 IPI:IPI00947925
RefSeq:NP_001178640.1 UniGene:Rn.137424 Ensembl:ENSRNOT00000068152
GeneID:84473 KEGG:rno:84473 NextBio:616964 ArrayExpress:F1MAM8
Uniprot:F1MAM8
Length = 824
Score = 432 (157.1 bits), Expect = 8.8e-40, P = 8.8e-40
Identities = 140/443 (31%), Positives = 218/443 (49%)
Query: 50 ANTSEDKSTAELDVEGLTIDESKKVNKF-LDEAEDSSIKTVTTGDTPYTSATTFEDLNLS 108
+ TSE AEL+ + E + + L A D TGD FE L LS
Sbjct: 11 STTSESAMAAELEAAPVPAAEPTPASPWNLRTAHDIGGPRTRTGDVVLAEPADFESLLLS 70
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF-VLGMLSRVDP 167
+L+GL F++PS +Q ++P L +LI QA++G+GKT F + + S +
Sbjct: 71 RPVLEGLRAA-GFERPSPVQLKAIP--LGRCGLDLIVQAKSGTGKTCVFSTIALDSLILE 127
Query: 168 NLKAPQALCICPTRELAIQNLEVLRKMG-KHTGITSECAVPTDSTNYVPIS--KRPPVTA 224
N Q L + PTRE+A+Q V+ +G K G+ EC V T P+S K
Sbjct: 128 NYST-QILILAPTREIAVQIHSVITAIGIKMEGL--ECHVFIGGT---PLSQDKTRLKKC 181
Query: 225 QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284
+ +G+PG IK+ + L +++ + DEAD +L+E F++ I + S Q
Sbjct: 182 HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK---Q 238
Query: 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY-KVYCPDELA-KVMVIRDR 342
+L SAT+ E + N +TR ++D + + + SL +KQY +V LA K+ + +
Sbjct: 239 MLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYYQVVNSYPLAHKIFEEKTQ 298
Query: 343 -IFELGEKM--GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399
+ EL K+ Q ++F + A L L G+ I G Q +R + + K
Sbjct: 299 HLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRLDAMAKLKQF 358
Query: 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459
+VLISTD+ +RG D ++VNL+VN D P+ D E Y+HRIGRAGRFG G+
Sbjct: 359 HCRVLISTDLTSRGIDAEKVNLVVNLDVPL--------DWETYMHRIGRAGRFGTLGLTV 410
Query: 460 NLLMDGDDMIIMEKIERYFDIKV 482
G++ +M KI + +I +
Sbjct: 411 TYCCRGEEENMMMKIAQKCNINL 433
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 430 (156.4 bits), Expect = 1.0e-39, P = 1.0e-39
Identities = 141/459 (30%), Positives = 230/459 (50%)
Query: 49 TANTSEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLS 108
T + + D + D E +E K N F AE K++ T T+ ++F+ +NLS
Sbjct: 216 TQDFNSDSAAGSSDSEE-DEEEIAKKNAFF--AEGDKEKSMMT-----TTHSSFQSMNLS 267
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--D 166
+LKGL + F+ P++IQ ++P+ L ++++ A GSGKT F++ +L R+
Sbjct: 268 RPILKGLS-NLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPILERLLYR 324
Query: 167 PNLKAP--QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPV 222
P K P + L +CPTRELA+Q V K+ T I + S + KRP
Sbjct: 325 PK-KVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRP-- 381
Query: 223 TAQVVIGTPGTIKKWMSAKKLGFS--RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
+VI TPG M + GF+ ++I+V DEAD ML++ GF D+ I++ +S
Sbjct: 382 --DIVIATPGRFIDHMRNSQ-GFTVENIEIMVMDEADRMLED-GFADELNEIIQACPKSR 437
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFV--KKEELSLESVKQYKVYCPDELAKVMV 338
Q +LFSAT + V + + + ++FV KK L + + +V EL + +
Sbjct: 438 ---QTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAM 494
Query: 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398
+ EL + +TIIF R+K A + T I G+ QE+R + +++F+D
Sbjct: 495 LIYLCKELFHR--RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRD 552
Query: 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV 458
G L++TDV +RG D + + +++NY+ P H EVYLHR+GR R GR G
Sbjct: 553 GKCNYLLATDVASRGIDIKGIEVVINYEAPATH--------EVYLHRVGRTARAGRSGRA 604
Query: 459 FNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALK 497
L +GD ++ + + + + T++ N + DF K
Sbjct: 605 ITLAGEGDRKVL-KGVFKNSSAQNTKLVNRNLDFNKVEK 642
>UNIPROTKB|F1MRW7 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:DAAA02007520 IPI:IPI00867090
UniGene:Bt.13425 Ensembl:ENSBTAT00000024914 Uniprot:F1MRW7
Length = 825
Score = 429 (156.1 bits), Expect = 1.9e-39, P = 1.9e-39
Identities = 134/406 (33%), Positives = 205/406 (50%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
L A D S TGD FE L LS +L+GL + F++PS +Q ++P L
Sbjct: 40 LRTAHDISGPRTRTGDVLLAEPADFESLLLSRPVLEGLRA-VGFERPSPVQLKAIP--LG 96
Query: 138 PPYRNLIAQARNGSGKTTCF-VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG- 195
+LI QA++G+GKT F + + S V NL Q L + PTRE+A+Q V+ +G
Sbjct: 97 RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-QILILAPTREIAVQIHSVITAIGI 155
Query: 196 KHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253
K G+ EC V T P+S K + +G+PG IK+ + L +++ +
Sbjct: 156 KMEGL--ECHVFIGGT---PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 210
Query: 254 DEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313
DEAD +L+E F++ I + S Q+L SAT+ E + N +T+ +++ + +
Sbjct: 211 DEADKLLEEGSFQEQINWIYSSLPASK---QMLAVSATYPEFLANALTKYMREPTFVRLN 267
Query: 314 KEELSLESVKQY-KVYCPDELA-KVMVIRDR-IFELGEKM--GQTIIFVRTKNSASALHK 368
+ SL +KQY K+ LA K+ + + + EL K+ Q ++F + A L
Sbjct: 268 SSDPSLIGLKQYYKIVNSYPLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLAD 327
Query: 369 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428
L G+ I G Q R + + K +VLISTD+ +RG D ++VNL+VN D P
Sbjct: 328 ILSSKGFPAEYISGNMDQNRRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVP 387
Query: 429 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI 474
+ DCE Y+HRIGRAGRFG G+ G++ +M KI
Sbjct: 388 L--------DCETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMKI 425
>UNIPROTKB|F8VQ10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:NAENPAI EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI01025218 SMR:F8VQ10
Ensembl:ENST00000417556 Ensembl:ENST00000547039
Ensembl:ENST00000547489 Ensembl:ENST00000548340
Ensembl:ENST00000548614 Ensembl:ENST00000550217
Ensembl:ENST00000552288 Uniprot:F8VQ10
Length = 443
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 134/451 (29%), Positives = 223/451 (49%)
Query: 59 AELDVEGLTID-ESKKVNKFL--DEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
AE DV+ +D E +V D AE + K V G ++ F D L PELL+ +
Sbjct: 2 AENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVK-GSYVSIHSSGFRDFLLKPELLRAI 60
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKAP 172
V+ F+ PS++Q +P + +++ QA++G GKT FVL L +++P +
Sbjct: 61 -VDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVYLG 117
Query: 173 QAL-----CI-------CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
+ L C+ C TRELA Q + + K+ + AV + I K
Sbjct: 118 RVLGRGFWCVFVSVLVMCHTRELAFQISKEYERFSKYMP-NVKVAVFFGGLS---IKKDE 173
Query: 221 PVTAQ----VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
V + +V+GTPG I K L +K + DE D ML++ R D +++I
Sbjct: 174 EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD----VQEI 229
Query: 277 ERSSGH-CQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELA 334
R + H QV++FSAT ++ ++ + ++D ++FV E +L+L ++QY V D
Sbjct: 230 FRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN-E 288
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
K + D + L + Q +IFV++ AL + L + + I QEER +
Sbjct: 289 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 346
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
+FKD ++L++T++ RG D ++VN+ NYD P D + YLHR+ RAGRFG
Sbjct: 347 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGT 398
Query: 455 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
KG+ + D +D I+ ++ F++ ++E+
Sbjct: 399 KGLAITFVSDENDAKILNDVQDRFEVNISEL 429
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 130/401 (32%), Positives = 204/401 (50%)
Query: 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSG 152
DTP T F DL LS LLK + + ++ PS IQA ++P +++ R+++A A+ G+G
Sbjct: 3 DTP----TKFTDLGLSEALLKAVR-DKGYETPSPIQAQAIPAVISG--RDVMAAAQTGTG 55
Query: 153 KTTCFVLGMLSRVDPNL--KAP----QALCICPTRELAIQNLEVLRKMGKHTGITSECAV 206
KT F L +L R+ + K +AL + PTRELA Q E + GK+ + S
Sbjct: 56 KTAGFTLPLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVF 115
Query: 207 PTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFR 266
N P R V++ TPG + + + + FS+L++ + DEAD MLD GF
Sbjct: 116 GGVKIN--PQIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLD-MGFI 172
Query: 267 DDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYK 326
D ++M + + Q LLFSATF+ ++ +V + ++ V E + E V Q+
Sbjct: 173 RDIKKLMTALPKDR---QNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQW- 228
Query: 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQ 386
+ D+ K V+ I E Q ++F +TK+ A+ L K L+ G I G Q
Sbjct: 229 LTAVDKKRKPAVLTHLIKE--NNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQ 286
Query: 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446
R K + FKDG ++L++TD+ ARG D + +VN+D P ++ D Y+HRI
Sbjct: 287 GARTKALAAFKDGSVKILVATDIAARGIDIDLLPQVVNFDLP-----NVPED---YVHRI 338
Query: 447 GRAGRFGRKGVVFNLLM-DGDDMI--IMEKIERYFDIKVTE 484
GR R G G +L+ D D++ I I+++ + KV E
Sbjct: 339 GRTARAGNTGQALSLVCADELDLLWGIEHVIQQHIERKVIE 379
>FB|FBgn0011802 [details] [associations]
symbol:Gem3 "Gemin3" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0022618 "ribonucleoprotein complex
assembly" evidence=IMP] [GO:0071254 "cytoplasmic U snRNP body"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014296 GO:GO:0007528 GO:GO:0006200 GO:GO:0003676
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0016779 HSSP:P10081 KO:K13131
GeneTree:ENSGT00530000062880 GO:GO:0071254 GO:GO:0022618
EMBL:AF160911 RefSeq:NP_524019.1 UniGene:Dm.921 SMR:Q9V3C4
IntAct:Q9V3C4 MINT:MINT-750334 STRING:Q9V3C4
EnsemblMetazoa:FBtr0076292 EnsemblMetazoa:FBtr0334100 GeneID:39195
KEGG:dme:Dmel_CG6539 UCSC:CG6539-RA CTD:39195 FlyBase:FBgn0011802
InParanoid:Q9V3C4 OMA:TPTKIQA OrthoDB:EOG44MW6X GenomeRNAi:39195
NextBio:812430 Uniprot:Q9V3C4
Length = 1028
Score = 429 (156.1 bits), Expect = 3.4e-39, P = 3.4e-39
Identities = 115/368 (31%), Positives = 187/368 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TFE+L L LL GL F P+KIQA ++PM L +LI Q+++G+GKT +V+
Sbjct: 26 TFEELRLYRNLLNGLK-RNNFVTPTKIQAAAIPMALAK--MDLIIQSKSGTGKTLIYVIA 82
Query: 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
++ +PN+ P A+ + PTRELAIQ + + K +C+ T+ KR
Sbjct: 83 VVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFR-DFKCSAFIGGTDVAKDRKRM 141
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
++V+IGTPG + + S+L++LV DEAD + + + K IE
Sbjct: 142 N-ESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHT---VSKLIEAMP 197
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS-LESVKQYKVYCPDELAKVMVI 339
+ Q++ SAT+++ + + +++ D L E + L ++Q+ P + V +
Sbjct: 198 KNRQIIACSATYDQNLDERLAKVM-DKPMLISNSERATVLLGIRQFVYELPQQNNSVEEM 256
Query: 340 RDRIFELGEKMGQ-----TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
R ++ LG+ Q IIF ++ A + L G + I GA Q ER + +
Sbjct: 257 RLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFE 316
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
+++ ++L++TD++ARG D NL++N DPP H YLHRIGRAGRFG
Sbjct: 317 GYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDH--------VTYLHRIGRAGRFGS 368
Query: 455 KGVVFNLL 462
KG+ +
Sbjct: 369 KGIAITFI 376
>UNIPROTKB|F1LP27 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
Uniprot:F1LP27
Length = 312
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 108/310 (34%), Positives = 170/310 (54%)
Query: 180 TREL---AIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK 235
+REL A + +V+ +G + G T C T+ N + K +V+GTPG +
Sbjct: 12 SRELYNYAFKIQKVILALGDYMGATCHACIGGTNVRN--EMQKLQAEAPHIVVGTPGRVF 69
Query: 236 KWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNET 295
++ + L +K+ V DEAD ML GF+D I + + S QV+L SAT
Sbjct: 70 DMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS---IQVVLLSATMPTD 125
Query: 296 VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTII 355
V + ++D ++ VKKEEL+LE +KQ+ + E K+ + D ++E + Q +I
Sbjct: 126 VLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-LYET-LTITQAVI 183
Query: 356 FVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 415
F+ T+ L + + + V+ + G Q+ERD I++EF+ G ++VLI+TD+LARG D
Sbjct: 184 FLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 243
Query: 416 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIE 475
QQV+L++NYD P E Y+HRIGR GRFGRKGV N + + D I+ + IE
Sbjct: 244 VQQVSLVINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD-IE 294
Query: 476 RYFDIKVTEV 485
+++ V E+
Sbjct: 295 TFYNTTVEEM 304
>UNIPROTKB|Q9UHI6 [details] [associations]
symbol:DDX20 "Probable ATP-dependent RNA helicase DDX20"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0015030
"Cajal body" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=TAS]
[GO:0005856 "cytoskeleton" evidence=TAS] [GO:0000387 "spliceosomal
snRNP assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0017053
GO:GO:0005654 GO:GO:0006917 GO:GO:0005856 GO:GO:0003677
GO:GO:0005681 GO:GO:0000244 GO:GO:0000122 GO:GO:0043065
GO:GO:0015030 GO:GO:0034660 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AF171063 EMBL:AF106019 EMBL:AK001506
EMBL:AL049557 EMBL:BC011556 EMBL:AL133598 IPI:IPI00005904
PIR:T43476 RefSeq:NP_009135.4 UniGene:Hs.591405 PDB:2OXC PDB:3B7G
PDBsum:2OXC PDBsum:3B7G ProteinModelPortal:Q9UHI6 SMR:Q9UHI6
DIP:DIP-32606N IntAct:Q9UHI6 MINT:MINT-96973 STRING:Q9UHI6
PhosphoSite:Q9UHI6 DMDM:12643886 PaxDb:Q9UHI6 PeptideAtlas:Q9UHI6
PRIDE:Q9UHI6 DNASU:11218 Ensembl:ENST00000369702 GeneID:11218
KEGG:hsa:11218 UCSC:uc001ebs.3 CTD:11218 GeneCards:GC01P112298
HGNC:HGNC:2743 HPA:CAB015427 HPA:HPA005516 HPA:HPA023541 MIM:606168
neXtProt:NX_Q9UHI6 PharmGKB:PA27209 HOGENOM:HOG000112184
HOVERGEN:HBG051330 InParanoid:Q9UHI6 KO:K13131 OMA:VEDYEHY
OrthoDB:EOG4SF95N PhylomeDB:Q9UHI6 EvolutionaryTrace:Q9UHI6
GenomeRNAi:11218 NextBio:42699 ArrayExpress:Q9UHI6 Bgee:Q9UHI6
CleanEx:HS_DDX20 Genevestigator:Q9UHI6 GermOnline:ENSG00000064703
Uniprot:Q9UHI6
Length = 824
Score = 426 (155.0 bits), Expect = 3.9e-39, P = 3.9e-39
Identities = 135/416 (32%), Positives = 210/416 (50%)
Query: 76 KFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMI 135
+ L A+D S TGD FE L LS +L+GL F++PS +Q ++P
Sbjct: 38 RILRTAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAA-GFERPSPVQLKAIP-- 94
Query: 136 LTPPYRNLIAQARNGSGKTTCF-VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194
L +LI QA++G+GKT F + + S V NL Q L + PTRE+A+Q V+ +
Sbjct: 95 LGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-QILILAPTREIAVQIHSVITAI 153
Query: 195 G-KHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKIL 251
G K G+ EC V T P+S K + +G+PG IK+ + L +++
Sbjct: 154 GIKMEGL--ECHVFIGGT---PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLF 208
Query: 252 VYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLF 311
+ DEAD +L+E F++ I + S Q+L SAT+ E + N +T+ ++D +
Sbjct: 209 ILDEADKLLEEGSFQEQINWIYSSLPASK---QMLAVSATYPEFLANALTKYMRDPTFVR 265
Query: 312 VKKEELSLESVKQY-KVYCPDELA-KVMVIRDR-IFELGEKM--GQTIIFVRTKNSASAL 366
+ + SL +KQY KV LA KV + + + EL ++ Q ++F + A L
Sbjct: 266 LNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHL 325
Query: 367 HKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYD 426
L G+ I G Q +R + + K +VLISTD+ +RG D ++VNL+VN D
Sbjct: 326 ADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLD 385
Query: 427 PPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482
P+ D E Y+HRIGRAGRFG G+ G++ +M +I + +I +
Sbjct: 386 VPL--------DWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINL 433
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 118/398 (29%), Positives = 202/398 (50%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
+ TTF +L L LL+ L + F +P+ IQA ++P L R+++ A G+GKT +
Sbjct: 2 TVTTFSELELDESLLEALQ-DKGFTRPTAIQAAAIPPALDG--RDVLGSAPTGTGKTAAY 58
Query: 158 VLGMLSRV-D-PNLKA--PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213
+L L + D P K+ P+ L + PTRELA+Q + R++ KHT + + A T Y
Sbjct: 59 LLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHL--DIATITGGVAY 116
Query: 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIM 273
+ ++ +V+ T G + +++ + ++ L+ DEAD MLD GF D I
Sbjct: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLD-MGFAQDIEHIA 175
Query: 274 KDIERSSGHCQVLLFSATFN-ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 332
+ Q LLFSAT + +++F R+++D ++ + + Q+ Y D+
Sbjct: 176 GETRWRK---QTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQW-YYRADD 231
Query: 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 392
L + + + E ++I+FVR + L L++ G + G +Q +R++
Sbjct: 232 LEHKTALLVHLLKQPEAT-RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEA 290
Query: 393 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 452
+K +G VL++TDV ARG D V+ + N+D P + G + YLHRIGR R
Sbjct: 291 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMP-RSG-------DTYLHRIGRTARA 342
Query: 453 GRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 490
GRKG +L+ + D +++ K+ RY + + + R DE
Sbjct: 343 GRKGTAISLV-EAHDHLLLGKVGRYIEEPI-KARVIDE 378
>UNIPROTKB|Q9NZE6 [details] [associations]
symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
UCSC:uc003fqv.3 Uniprot:Q9NZE6
Length = 312
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 107/304 (35%), Positives = 167/304 (54%)
Query: 183 LAIQNLEVLRKMGKHTGITSE-CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK 241
L IQ +V+ +G + G T C T+ N + K +V+GTPG + ++ +
Sbjct: 20 LKIQ--KVILALGDYMGATCHACIGGTNVRN--EMQKLQAEAPHIVVGTPGRVFDMLNRR 75
Query: 242 KLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVT 301
L +K+ V DEAD ML GF+D I + + S QV+L SAT V
Sbjct: 76 YLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTS---IQVVLLSATMPTDVLEVTK 131
Query: 302 RIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKN 361
+ ++D ++ VKKEEL+LE +KQ+ + E K+ + D ++E + Q +IF+ T+
Sbjct: 132 KFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD-LYET-LTITQAVIFLNTRR 189
Query: 362 SASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 421
L + + + V+ + G Q+ERD I++EF+ G ++VLI+TD+LARG D QQV+L
Sbjct: 190 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 249
Query: 422 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 481
++NYD P E Y+HRIGR GRFGRKGV N + + D I+ + IE +++
Sbjct: 250 VINYDLPTNR--------ENYIHRIGRGGRFGRKGVAINFVTEEDKRILRD-IETFYNTT 300
Query: 482 VTEV 485
V E+
Sbjct: 301 VEEM 304
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 130/397 (32%), Positives = 201/397 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F L LS L K + E + PS IQA ++P +LT ++++A A+ G+GKT F L
Sbjct: 2 SFSALGLSAPLQKAVS-EQGYDTPSPIQAQAIPAVLTG--KDVMAAAQTGTGKTAGFTLP 58
Query: 161 MLSRVDPNLKAP----QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
+L + KA +AL + PTRELA Q E + GK+ + S AV P
Sbjct: 59 LLELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRS--AVVFGGVPINPQ 116
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
+ V++ TPG + + + F++L+ILV DEAD MLD RD I K +
Sbjct: 117 INKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRD----IKKIL 172
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP-DELAK 335
Q L+FSATF++ ++ +V ++ V + +VKQ+ CP D+ K
Sbjct: 173 ALLPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQW--ICPVDKTQK 230
Query: 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395
++ I + E Q ++F RTK+ A+ L K+L I G Q R K + +
Sbjct: 231 SALLIQLIKQ--ENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALAD 288
Query: 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 455
FK G +VL++TD+ ARG D Q+ +VN+D P ++ D Y+HRIGR GR G
Sbjct: 289 FKSGEVRVLVATDIAARGLDIDQLPQVVNFDLP-----NVPED---YVHRIGRTGRAGAT 340
Query: 456 GVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDF 492
G +L+ +++ +++ IER + +V E R E F
Sbjct: 341 GQAVSLV-SSEEIKLLKDIERLIN-RVLE-RQEVEGF 374
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 136/435 (31%), Positives = 212/435 (48%)
Query: 53 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELL 112
+E + +E D E E KKV K ++ S+ T D + S F +LNL PEL+
Sbjct: 37 AEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFES---FSELNLVPELI 93
Query: 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP 172
+ + + KP+ IQ+ ++P L ++I A+ GSGKT F + +L+R+ + +
Sbjct: 94 QACK-NLNYSKPTPIQSKAIPPALEG--HDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY 150
Query: 173 QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG 232
A + PTRELA Q E +G G+ S C V N + ++ ++I TPG
Sbjct: 151 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIV--GGMNMMDQARDLMRKPHIIIATPG 208
Query: 233 TIKKWMSAKKLGFS--RLKILVYDEADHMLD-EAG-FRDDSLRIMKDIERSSGHCQVLLF 288
+ + K GFS +LK LV DEAD +LD E G D L+I+ ER++ LF
Sbjct: 209 RLMDHLENTK-GFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTT-----YLF 262
Query: 289 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 348
SAT + + + + V + +++++ Q + P L +I + L E
Sbjct: 263 SATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLI----YLLNE 318
Query: 349 KMGQT-IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 407
+G+T IIF RTK +A L + T + G Q +R + FK G +L++T
Sbjct: 319 FIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVAT 378
Query: 408 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467
DV ARG D V+++VNYD PV D + Y+HR+GR R GR G +L+ D
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPV--------DSKSYIHRVGRTARAGRSGKSISLVSQYDL 430
Query: 468 MIIMEKIERYFDIKV 482
+I+ +IE K+
Sbjct: 431 ELIL-RIEEVLGKKL 444
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 393 (143.4 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 113/366 (30%), Positives = 176/366 (48%)
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-- 166
P+ + ++ F +P+ IQ P+ L+ R+++ A+ GSGKT ++L + ++
Sbjct: 98 PQYVMDALMDQNFTEPTPIQCQGFPLALSG--RDMVGIAQTGSGKTLAYLLPAIVHINHQ 155
Query: 167 PNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVT 223
P L+ P L + PTRELA Q +V GK + + S C P +
Sbjct: 156 PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKG--PQIRDLERG 213
Query: 224 AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHC 283
++ I TPG + ++ A K R LV DEAD MLD GF +I+ I
Sbjct: 214 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDR--- 269
Query: 284 QVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDELA--KVMVIR 340
Q L++SAT+ + V+ ++DY Q+ V ELS ++ Q C + K++ +
Sbjct: 270 QTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 329
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
+ I + EK +TIIFV TK L + ++ G+ I G Q ERD ++ EF+ G
Sbjct: 330 EEI--MAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 387
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
+LI+TDV +RG D + V ++NYD P E Y+HRIGR R KG +
Sbjct: 388 APILIATDVASRGLDVEDVKFVINYDYP--------NSSEDYVHRIGRTARSTNKGTAYT 439
Query: 461 LLMDGD 466
G+
Sbjct: 440 FFTPGN 445
Score = 37 (18.1 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 104 DLNLSPELLKGLYVE 118
DLN P+ K YVE
Sbjct: 42 DLNELPKFEKNFYVE 56
>UNIPROTKB|E9PSX0 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00554119
Ensembl:ENSRNOT00000020984 ArrayExpress:E9PSX0 Uniprot:E9PSX0
Length = 826
Score = 421 (153.3 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 140/445 (31%), Positives = 218/445 (48%)
Query: 50 ANTSEDKSTAELDVEGLTIDESKKVNKF-LDEAEDSSIKTVTTGDTPYTSATTFEDLNLS 108
+ TSE AEL+ + E + + L A D TGD FE L LS
Sbjct: 11 STTSESAMAAELEAAPVPAAEPTPASPWNLRTAHDIGGPRTRTGDVVLAEPADFESLLLS 70
Query: 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF-VLGMLSRVDP 167
+L+GL F++PS +Q ++P L +LI QA++G+GKT F + + S +
Sbjct: 71 RPVLEGLRAA-GFERPSPVQLKAIP--LGRCGLDLIVQAKSGTGKTCVFSTIALDSLILE 127
Query: 168 NLKAPQALCICPTRELAIQNLEVLRKMG-KHTGITSECAVPTDSTNYVPIS--KRPPVTA 224
N Q L + PTRE+A+Q V+ +G K G+ EC V T P+S K
Sbjct: 128 NYST-QILILAPTREIAVQIHSVITAIGIKMEGL--ECHVFIGGT---PLSQDKTRLKKC 181
Query: 225 QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284
+ +G+PG IK+ + L +++ + DEAD +L+E F++ I + S Q
Sbjct: 182 HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK---Q 238
Query: 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY-KVYCPDELA-KVMVIRDR 342
+L SAT+ E + N +TR ++D + + + SL +KQY +V LA K+ + +
Sbjct: 239 MLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYYQVVNSYPLAHKIFEEKTQ 298
Query: 343 -IFELGEKM--GQTIIFVRTKNSASALHKALKDFGYEVTTIMGA--TIQEERDKIVKEFK 397
+ EL K+ Q ++F + A L L G+ I G Q +R + + K
Sbjct: 299 HLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNGNMNQNQRLDAMAKLK 358
Query: 398 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457
+VLISTD+ +RG D ++VNL+VN D P+ D E Y+HRIGRAGRFG G+
Sbjct: 359 QFHCRVLISTDLTSRGIDAEKVNLVVNLDVPL--------DWETYMHRIGRAGRFGTLGL 410
Query: 458 VFNLLMDGDDMIIMEKIERYFDIKV 482
G++ +M KI + +I +
Sbjct: 411 TVTYCCRGEEENMMMKIAQKCNINL 435
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 121/393 (30%), Positives = 202/393 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+FE L LS ELL+ + E + +P+ +Q ++P+IL R+++ A+ G+GKT F L
Sbjct: 11 SFEVLGLSAELLRAIR-EQGYVEPTPVQRQAIPVILQA--RDVMVTAQTGTGKTAGFTLP 67
Query: 161 MLSRV---DPNLKA---P--QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN 212
+L R+ P L+ P +AL + PTRELA+Q E +R GK+ + + V +
Sbjct: 68 LLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPL--KATVVHGGVS 125
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRI 272
P +++ TPG + ++ L SR++ V DEAD MLD GF D RI
Sbjct: 126 IKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLD-MGFLPDIRRI 184
Query: 273 MKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 332
+K + S Q LLFSATF++ +K +++ + V + + + + V+ D
Sbjct: 185 LKLLPESR---QNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARIT-HVVHPVDR 240
Query: 333 LAKVMVIRDRIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
K ++ F +G K Q ++F RTK+ A+ L + L+ G I G Q R +
Sbjct: 241 QRKRELLS---FMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMR 297
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+ +FK G +VL++TDV ARG D ++ ++N++ P + Y+HR+GR GR
Sbjct: 298 ALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELP--------DAAKDYVHRVGRTGR 349
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
GV +L+ GD++ ++ IE+ K+ +
Sbjct: 350 ASNDGVAISLV-SGDEVRLLRDIEKLLQSKMPQ 381
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 121/393 (30%), Positives = 202/393 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+FE L LS ELL+ + E + +P+ +Q ++P+IL R+++ A+ G+GKT F L
Sbjct: 11 SFEVLGLSAELLRAIR-EQGYVEPTPVQRQAIPVILQA--RDVMVTAQTGTGKTAGFTLP 67
Query: 161 MLSRV---DPNLKA---P--QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN 212
+L R+ P L+ P +AL + PTRELA+Q E +R GK+ + + V +
Sbjct: 68 LLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPL--KATVVHGGVS 125
Query: 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRI 272
P +++ TPG + ++ L SR++ V DEAD MLD GF D RI
Sbjct: 126 IKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLD-MGFLPDIRRI 184
Query: 273 MKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 332
+K + S Q LLFSATF++ +K +++ + V + + + + V+ D
Sbjct: 185 LKLLPESR---QNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARIT-HVVHPVDR 240
Query: 333 LAKVMVIRDRIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDK 391
K ++ F +G K Q ++F RTK+ A+ L + L+ G I G Q R +
Sbjct: 241 QRKRELLS---FMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMR 297
Query: 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
+ +FK G +VL++TDV ARG D ++ ++N++ P + Y+HR+GR GR
Sbjct: 298 ALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELP--------DAAKDYVHRVGRTGR 349
Query: 452 FGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTE 484
GV +L+ GD++ ++ IE+ K+ +
Sbjct: 350 ASNDGVAISLV-SGDEVRLLRDIEKLLQSKMPQ 381
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 130/392 (33%), Positives = 193/392 (49%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
+T+ +TF L + E+++ L E ++P IQ ++LP+ L ++I QAR G GKT
Sbjct: 6 HTTESTFAKLGVRDEIVRALGEE-GIKRPFAIQELTLPLALDG--EDVIGQARTGMGKTF 62
Query: 156 CFVLGMLSRVD------PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI---TSECAV 206
F + +L R+ P AP+AL + PTREL +Q + L GK+ T + A
Sbjct: 63 AFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAA 122
Query: 207 PTDSTNYVPI-SKRP--P------VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257
+ V I RP P A VV+GTPG + L L +LV DEAD
Sbjct: 123 VRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEAD 182
Query: 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV-TRIVKDYNQLFVKKEE 316
MLD GF D RI++ I Q +LFSAT + + T +V+ +
Sbjct: 183 EMLD-LGFLPDIERILRQIPADR---QSMLFSATMPDPIITLARTFMVRPTHIRAEAPHS 238
Query: 317 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 376
++ + VY L KV ++ R+ + ++ G T+IF RTK +A + L + G+
Sbjct: 239 SAVHDATEQFVYRAHALDKVELV-SRVLQARDR-GATMIFTRTKRTAQKVADELTERGFA 296
Query: 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 436
V + G Q R+K +K F+ G VL++TDV ARG D V ++NY P
Sbjct: 297 VGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCP-------- 348
Query: 437 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 468
D ++Y+HRIGR GR GR GV L+ D D++
Sbjct: 349 EDEKMYVHRIGRTGRAGRTGVAVTLV-DWDEL 379
>MGI|MGI:1858415 [details] [associations]
symbol:Ddx20 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 20"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IPI] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0019904
"protein domain specific binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1858415 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0000122
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:CH466608 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11218 HOGENOM:HOG000112184 HOVERGEN:HBG051330
KO:K13131 OMA:VEDYEHY OrthoDB:EOG4SF95N EMBL:AJ250027 EMBL:AF220454
EMBL:BC125471 EMBL:BC137721 IPI:IPI00122400 RefSeq:NP_059093.3
UniGene:Mm.272826 ProteinModelPortal:Q9JJY4 SMR:Q9JJY4
IntAct:Q9JJY4 STRING:Q9JJY4 PhosphoSite:Q9JJY4 PaxDb:Q9JJY4
PRIDE:Q9JJY4 Ensembl:ENSMUST00000090680 GeneID:53975 KEGG:mmu:53975
GeneTree:ENSGT00530000062880 InParanoid:Q059Z6 NextBio:310865
Bgee:Q9JJY4 CleanEx:MM_DDX20 Genevestigator:Q9JJY4
GermOnline:ENSMUSG00000027905 Uniprot:Q9JJY4
Length = 825
Score = 419 (152.6 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 138/441 (31%), Positives = 214/441 (48%)
Query: 52 TSEDKSTAELDVEGLTIDESKKVNKFLDE-AEDSSIKTVTTGDTPYTSATTFEDLNLSPE 110
TSE AE + E + + A D TGD FE L LS
Sbjct: 14 TSESTMAAERAAAPVQAVEPTPASPWTQRTAHDIGGPRTRTGDVVLAEPADFESLLLSRP 73
Query: 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF-VLGMLSRVDPNL 169
+L+GL F++PS +Q ++P L +LI QA++G+GKT F + + S + N
Sbjct: 74 VLEGLRAA-GFERPSPVQLKAIP--LGRCGLDLIVQAKSGTGKTCVFSTIALDSLILENY 130
Query: 170 KAPQALCICPTRELAIQNLEVLRKMG-KHTGITSECAVPTDSTNYVPIS--KRPPVTAQV 226
Q L + PTRE+A+Q V+ +G K G+ EC V T P+S K +
Sbjct: 131 ST-QILILAPTREIAVQIHSVITAIGIKMEGL--ECHVFIGGT---PLSQDKTRLKKCHI 184
Query: 227 VIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVL 286
+G+PG IK+ + L +++ + DEAD +L+E F++ I + S Q+L
Sbjct: 185 AVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK---QML 241
Query: 287 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY-KVYCPDELA-KVMVIRDR-I 343
SAT+ E + N +TR ++D + + + SL +KQY +V LA K+ + + +
Sbjct: 242 AVSATYPEVLANALTRYMRDPTFVRLNPSDPSLIGLKQYYQVVNSYPLAHKIFEEKTQHL 301
Query: 344 FELGEKM--GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401
EL K+ Q ++F + A L L G+ I G Q +R + + K
Sbjct: 302 QELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRLDAMAKLKQFHC 361
Query: 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461
+VLISTD+ +RG D ++VNL+VN D P+ D E Y+HRIGRAGRFG G+
Sbjct: 362 RVLISTDLTSRGIDAEKVNLVVNLDVPL--------DWETYMHRIGRAGRFGTLGLTVTY 413
Query: 462 LMDGDDMIIMEKIERYFDIKV 482
G++ +M KI + +I +
Sbjct: 414 CCRGEEENMMMKIAQKCNINL 434
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 417 (151.9 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 127/399 (31%), Positives = 204/399 (51%)
Query: 83 DSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRN 142
D + V+ D P + TFE+ NL L K + + + K + IQ S+P+I+ R+
Sbjct: 270 DDIVVEVSGSDVP-PAILTFEEANLCDSLAKNV-CKSGYVKLTPIQKHSIPIIVAG--RD 325
Query: 143 LIAQARNGSGKTTCFVLGMLSR-----VDPN----LKAPQALCICPTRELAIQNLEVLRK 193
L+A A+ GSGKT F+L +L+ V+ + LK P+A+ + PTREL Q RK
Sbjct: 326 LMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARK 385
Query: 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253
T + V T K+ ++ TPG + + +K+G ++L+ LV
Sbjct: 386 FSYGTCVRP--VVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVL 443
Query: 254 DEADHMLDEAGFRDDSLRIMKDIER-SSGHCQVLLFSATFNETVKNFVTRIVK-DYNQLF 311
DEAD MLD GFR+D ++K S Q L+FSATF ++++ I+K DY +
Sbjct: 444 DEADRMLD-MGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVV 502
Query: 312 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG--QTIIFVRTKNSASALHKA 369
V + + V+Q + DE K +D++ E+ +++G +T++FV+TK A +
Sbjct: 503 VGQVGGACSDVEQMVIEV-DEFGK----KDKLMEILQEIGSERTMVFVKTKKKADFIATF 557
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429
L T+I G Q+ER+ +++F+ G V+++T V ARG D + V+ ++N+D P
Sbjct: 558 LCQEKVPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIP- 616
Query: 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL-MDGDD 467
D + Y+HRIGR GR G G + GDD
Sbjct: 617 -------DDIDEYVHRIGRTGRCGNTGRAISFFDKRGDD 648
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 118/382 (30%), Positives = 193/382 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TF +L L+P +LK + + +P+ +QA ++P L +L+A A+ G+GKT FVL
Sbjct: 2 TFAELKLAPHILKAV-AACGYTEPTPVQAAAVPRALENV--DLLATAQTGTGKTAAFVLP 58
Query: 161 MLSRVD-PNL---KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
L R+ P + P+ L + PTRELA Q + +R G + S + Y
Sbjct: 59 ALQRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAIL--GGMPYHAQ 116
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
+ ++ TPG + + + L SRL++LV DEAD MLD GF DD RI
Sbjct: 117 LRLLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLD-MGFSDDVDRIAA-- 173
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA-K 335
S Q LLF+AT + + R++++ ++ + + + E ++Q +++ D+L K
Sbjct: 174 -ASPATRQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQ-RLHVADDLHHK 231
Query: 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395
++R I + E + + IIF TK A L LK G+ + G Q R++ +
Sbjct: 232 NRLLRHLITD--ESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAA 289
Query: 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 455
K G ++L++TDV ARG D ++ ++N+D P K E Y+HRIGR GR G
Sbjct: 290 MKQGRIRLLVATDVAARGLDVTGISHVINFDLP----KFAED----YVHRIGRTGRAGAS 341
Query: 456 GVVFNLLMDGDDMIIMEKIERY 477
G+ + +++ + +IERY
Sbjct: 342 GIAISFA-SLNEVNYLARIERY 362
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 126/397 (31%), Positives = 196/397 (49%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
T F +LNL+P++LK + E ++ P+ IQA ++P L R+++ A+ G+GKT F L
Sbjct: 2 TKFSELNLNPKVLKAIE-EAGYETPTPIQAGAIPPALEG--RDVLGIAQTGTGKTASFTL 58
Query: 160 GM---LSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
M L+R + P++L +CPTRELA Q E KH +T A+ ++
Sbjct: 59 PMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTK--ALLIGGVSFKEQ 116
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
V+I TPG + KL + ++I+V DEAD MLD GF D RI
Sbjct: 117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLD-MGFIPDIERIFSLT 175
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ----YKVYCPDE 332
+ Q L FSAT ++ + ++ V ++ + E+++Q +K D
Sbjct: 176 PFTR---QTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDR 232
Query: 333 LA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
A K V+R I GEK IIF K + K+L+ +GY+ I G Q +R
Sbjct: 233 EASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRT 292
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
+ + F++G ++L+++DV ARG D V+ + N+D P G H P E Y+HRIGR G
Sbjct: 293 RTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVP---G-H--P--EDYVHRIGRTG 344
Query: 451 RFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRN 487
R GR G L + D+ + + IE+ + + N
Sbjct: 345 RAGRDGKAITLCIPRDEKAL-DAIEKLIQKDIPRLEN 380
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 114/376 (30%), Positives = 185/376 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+ P + G+ ++ P+ IQA ++P ++ R+++ A+ G+GKT F L +
Sbjct: 3 FKSFGFHPAVATGI-AAAGYETPTPIQAQAIPAVMAG--RDVMGLAQTGTGKTAAFALPI 59
Query: 162 LSRVDPNLKAP-QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220
L R+ + +AL I PTRELA Q + +G+ T + S N P ++
Sbjct: 60 LHRLQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVN--PQVQKL 117
Query: 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280
A+VV+ PG + ++ + SRL++LV DEAD M D GF D R++K +
Sbjct: 118 KAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFD-MGFLPDIRRVLKHLPPRR 176
Query: 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIR 340
Q LLFSAT ++ I+ D + V+ ++ + +Y ++ K ++
Sbjct: 177 ---QTLLFSATMPIDIRTLAQDILVD--PVTVQVGTVAPAVTVAHALYPVEQHLKTPLLL 231
Query: 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400
+ + + +IF RTK+ A L + L+ GY ++ G Q R + F+DG
Sbjct: 232 ELLRHTDTE--SVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGT 289
Query: 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460
Q+L++TD+ ARG D QV+ ++NYD P E Y+HRIGR GR R G F
Sbjct: 290 FQILVATDIAARGIDVSQVSHVINYDIP--------DTAEAYIHRIGRTGRAARSGDAFT 341
Query: 461 LLMDGDDMIIMEKIER 476
L+ DD ++ IER
Sbjct: 342 LVTS-DDGAMVRAIER 356
>UNIPROTKB|F1PXG6 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000021679 Uniprot:F1PXG6
Length = 825
Score = 416 (151.5 bits), Expect = 4.8e-38, P = 4.8e-38
Identities = 133/414 (32%), Positives = 207/414 (50%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
L A D S TGD FE L LS +L GL F++PS +Q ++P L
Sbjct: 42 LRTAHDVSGPRARTGDVLLAEPADFESLLLSRPVLDGLRAA-GFERPSPVQLKAIP--LG 98
Query: 138 PPYRNLIAQARNGSGKTTCF-VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG- 195
+LI QA++G+GKT F + + S V N ++ Q L + PTRE+A+Q V+ +G
Sbjct: 99 RCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN-QSTQILILAPTREIAVQIHSVITAIGI 157
Query: 196 KHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253
K G+ EC V T P+S K + +G+PG IK+ + L +++ +
Sbjct: 158 KMEGL--ECHVFIGGT---PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 212
Query: 254 DEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313
DEAD +L+E F++ I + S Q+L SAT+ E + N +T+ ++D + +
Sbjct: 213 DEADKLLEEGSFQEQINWIYSSLPASK---QMLAVSATYPEFLANALTKYMRDPTFVRLN 269
Query: 314 KEELSLESVKQY-KVYCPDELA-KVMVIR-DRIFELGEKM--GQTIIFVRTKNSASALHK 368
+ SL +KQY K+ LA K+ + + EL ++ Q ++F + A L
Sbjct: 270 SSDPSLIGLKQYYKIVNSYPLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLAD 329
Query: 369 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428
L G+ I G Q +R + + K +VLISTD+ +RG D ++VNL+VN D P
Sbjct: 330 ILSAKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVP 389
Query: 429 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482
+ D E Y+HRIGRAGRFG G+ G++ +M KI + +I +
Sbjct: 390 L--------DWETYMHRIGRAGRFGTLGLTVTYCCRGEEENVMMKIAQKCNINL 435
>UNIPROTKB|J9P828 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000050085 Uniprot:J9P828
Length = 825
Score = 416 (151.5 bits), Expect = 4.8e-38, P = 4.8e-38
Identities = 133/414 (32%), Positives = 207/414 (50%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
L A D S TGD FE L LS +L GL F++PS +Q ++P L
Sbjct: 42 LRTAHDVSGPRARTGDVLLAEPADFESLLLSRPVLDGLRAA-GFERPSPVQLKAIP--LG 98
Query: 138 PPYRNLIAQARNGSGKTTCF-VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG- 195
+LI QA++G+GKT F + + S V N ++ Q L + PTRE+A+Q V+ +G
Sbjct: 99 RCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN-QSTQILILAPTREIAVQIHSVITAIGI 157
Query: 196 KHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253
K G+ EC V T P+S K + +G+PG IK+ + L +++ +
Sbjct: 158 KMEGL--ECHVFIGGT---PLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 212
Query: 254 DEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313
DEAD +L+E F++ I + S Q+L SAT+ E + N +T+ ++D + +
Sbjct: 213 DEADKLLEEGSFQEQINWIYSSLPASK---QMLAVSATYPEFLANALTKYMRDPTFVRLN 269
Query: 314 KEELSLESVKQY-KVYCPDELA-KVMVIR-DRIFELGEKM--GQTIIFVRTKNSASALHK 368
+ SL +KQY K+ LA K+ + + EL ++ Q ++F + A L
Sbjct: 270 SSDPSLIGLKQYYKIVNSYPLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLAD 329
Query: 369 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428
L G+ I G Q +R + + K +VLISTD+ +RG D ++VNL+VN D P
Sbjct: 330 ILSAKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVP 389
Query: 429 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482
+ D E Y+HRIGRAGRFG G+ G++ +M KI + +I +
Sbjct: 390 L--------DWETYMHRIGRAGRFGTLGLTVTYCCRGEEENVMMKIAQKCNINL 435
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 119/373 (31%), Positives = 179/373 (47%)
Query: 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL 159
TTF D L+ +LK + E + P+ IQ ++P IL ++ A+ G+GKT FVL
Sbjct: 4 TTFADFGLAENILKAV-TESGYTIPTPIQREAIPHILMGG--DVTGVAQTGTGKTAAFVL 60
Query: 160 GMLSRVDPN---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
M+ R+ + P+ L +CPTRELA Q E K GK+ +T + S
Sbjct: 61 PMIQRLSTGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQET 120
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
+ V V+I TPG + KL ++ L+ DEAD MLD GF D I K
Sbjct: 121 LLQRGV--DVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLD-MGFIPD---IEKIC 174
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP--DELA 334
+ + Q LLFSATF ++ KD ++ V + + E++ Q+ V P D A
Sbjct: 175 AKLPANRQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKA 234
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
+ +R R+ E + I+F K + +L G++ I G Q R + ++
Sbjct: 235 RRTALR-RVIE-ATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQ 292
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
F+DG ++L+++DV ARG D V + N+ PP P E Y+HRIGR GR GR
Sbjct: 293 RFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPP--------PKDEDYVHRIGRTGRAGR 344
Query: 455 KGVVFNLLMDGDD 467
G + ++ DD
Sbjct: 345 TGESYTVVTPADD 357
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 120/401 (29%), Positives = 196/401 (48%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F DLNL ++++G+ + F + IQ +LP+ L +++ QA+ G+GKT F++ +
Sbjct: 3 FADLNLPEQVMQGV-ADAGFSDCTPIQEKTLPLSLGG--KDVAGQAQTGTGKTAAFLISL 59
Query: 162 LSRV-----DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
+++ + P+A+ + PTREL +Q + + +G H G T + +Y+
Sbjct: 60 FTKLLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIY--GGVDYMKQ 117
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
A VV+GTPG + ++ K +++LV DEAD M D GF D I++ +
Sbjct: 118 KNALKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFD-MGFIADLRFILRRL 176
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV 336
Q L+FSAT N+ V + ++ V E+++ E V+Q +Y K
Sbjct: 177 PPYDKR-QNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQV-LYHVGRKEKF 234
Query: 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396
++ + + G M +T+IFV TK A L + L + I G Q +R KI+++F
Sbjct: 235 PLLLGLLRKEG--MERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDF 292
Query: 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456
K G ++I+TDV +RG V+ ++NYD P D E Y+HRIGR R G +G
Sbjct: 293 KSGKLPIMIATDVASRGLHIDGVSHVINYDLP--------QDAEDYVHRIGRTARAGAEG 344
Query: 457 VVFNLLMDGDDMIIMEKIERYFDIKV-TEVRNSD---EDFK 493
++ D D +E I Y K+ E D DFK
Sbjct: 345 KAISMA-DEDGAFHLEAIHEYIKDKIPVEWAEDDLFVHDFK 384
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 413 (150.4 bits), Expect = 8.5e-38, P = 8.5e-38
Identities = 123/388 (31%), Positives = 195/388 (50%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
TFE+L+LS LLK + ++ F +P+ IQA ++P+ L ++++A A GSGKT F+L
Sbjct: 191 TFEELHLSRPLLKAVQ-KLGFSQPTPIQAKAIPLALNG--KDILASASTGSGKTAAFLLP 247
Query: 161 MLSRV---DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY---V 214
+L R+ D +A + L + PTRELA+Q V+ + + + ITS C + +N V
Sbjct: 248 VLERLLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITS-CLIVGGLSNKAQEV 306
Query: 215 PISKRPPVTAQVVIGTPGT-IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIM 273
+ K P VVI TPG I ++A +G L+IL+ DEAD +LD GF+D+ I
Sbjct: 307 ELRKSP----DVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLD-MGFKDE---IN 358
Query: 274 KDIERSSGHCQVLLFSATFNETVKNFVTRIVKD-----YNQLFVKKEELSLESVKQYKVY 328
K +E + Q +LFSAT N+ VK ++ + L L E VK +
Sbjct: 359 KIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQH 418
Query: 329 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEE 388
D A ++ + R+F G TIIF R+K L + + G QE+
Sbjct: 419 LSDRPAILLSLCTRVFN----QGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQ 474
Query: 389 RDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 448
R +++F+DG L+++DV +RG D V ++NY+ P Y+HR+GR
Sbjct: 475 RFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMAN--------YIHRVGR 526
Query: 449 AGRFGRKGVVFNLLMDGDDMIIMEKIER 476
R G G + + D D ++ + + +
Sbjct: 527 TARAGMDGKSCSFITDNDRKLLKDIVTK 554
>GENEDB_PFALCIPARUM|PFB0445c [details] [associations]
symbol:PFB0445c "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 117/411 (28%), Positives = 205/411 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+D L PELL+ + E F+ PS++Q ++P +T +++ QA++G GKT FVL +
Sbjct: 57 FKDFFLKPELLRAIS-ESGFEHPSEVQQETIPAAITGT--DILCQAKSGMGKTAVFVLSI 113
Query: 162 LSRVDPNL--------------------KAPQALCICPTRELAIQNLEVLRKMGKHT-GI 200
L ++D N K + L + TRELA Q + K+ +
Sbjct: 114 LQQLDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNV 173
Query: 201 TSECAVPTDSTN-YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259
E S N ++ + K + ++IGTPG I + K L +++ V DE D
Sbjct: 174 RCEVVYGGISMNKHIKLFKEDNIP-HIIIGTPGRILALIREKYLITDKIQHFVLDECDKC 232
Query: 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELS 318
L++ R D +I QV+ FSAT + +++ + +++ ++F+ E +L
Sbjct: 233 LEKLDMRSDVQKIFISTPLKK---QVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLK 289
Query: 319 LESVKQY--KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 376
L + Q+ K+ D+ K++ I D + + Q IIFV++ A L K L + +
Sbjct: 290 LHGLLQHYVKLQEKDKTRKLIEILDAL-----EFNQVIIFVKSVTRAITLDKLLTECNFP 344
Query: 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 436
I G Q+ER + +FK ++L+STD+ RG D ++VN+++NYD P
Sbjct: 345 SIAIHGGLEQQERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMP-------- 396
Query: 437 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRN 487
+ + YLHR+GRAGRFG KG+ + +D + + +++ F++ ++E+ N
Sbjct: 397 ENSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPN 447
>UNIPROTKB|Q9TY94 [details] [associations]
symbol:UAP56 "DEAD box helicase, UAP56" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 117/411 (28%), Positives = 205/411 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F+D L PELL+ + E F+ PS++Q ++P +T +++ QA++G GKT FVL +
Sbjct: 57 FKDFFLKPELLRAIS-ESGFEHPSEVQQETIPAAITGT--DILCQAKSGMGKTAVFVLSI 113
Query: 162 LSRVDPNL--------------------KAPQALCICPTRELAIQNLEVLRKMGKHT-GI 200
L ++D N K + L + TRELA Q + K+ +
Sbjct: 114 LQQLDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNV 173
Query: 201 TSECAVPTDSTN-YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259
E S N ++ + K + ++IGTPG I + K L +++ V DE D
Sbjct: 174 RCEVVYGGISMNKHIKLFKEDNIP-HIIIGTPGRILALIREKYLITDKIQHFVLDECDKC 232
Query: 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELS 318
L++ R D +I QV+ FSAT + +++ + +++ ++F+ E +L
Sbjct: 233 LEKLDMRSDVQKIFISTPLKK---QVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLK 289
Query: 319 LESVKQY--KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 376
L + Q+ K+ D+ K++ I D + + Q IIFV++ A L K L + +
Sbjct: 290 LHGLLQHYVKLQEKDKTRKLIEILDAL-----EFNQVIIFVKSVTRAITLDKLLTECNFP 344
Query: 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLE 436
I G Q+ER + +FK ++L+STD+ RG D ++VN+++NYD P
Sbjct: 345 SIAIHGGLEQQERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMP-------- 396
Query: 437 PDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRN 487
+ + YLHR+GRAGRFG KG+ + +D + + +++ F++ ++E+ N
Sbjct: 397 ENSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPN 447
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 122/411 (29%), Positives = 194/411 (47%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
D + + ++ +++ + TV D P+ TTF++ +L+ + + F KP+ IQ
Sbjct: 97 DVAARSDRDIEQFRKENEMTVKGHDIPHP-ITTFDEAGFPDYVLQEVK-DQGFPKPTPIQ 154
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTREL 183
PM L+ R++I A GSGKT + L + ++ P L+ P L + PTREL
Sbjct: 155 CQGWPMALSG--RDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTREL 212
Query: 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243
A+Q K GK + I + C P + ++ I TPG + + A K
Sbjct: 213 AVQIQTECSKFGKSSRIRNTCVYGGAPKG--PQIRDLARGVEICIATPGRLIDMLEAGKT 270
Query: 244 GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 303
R+ LV DEAD MLD GF +I+ I Q L++SAT+ + V+
Sbjct: 271 NLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVQQLTRDY 326
Query: 304 VKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE-----LGEKMGQTIIFVR 358
+ D Q+ + EL+ V DE +K RDR+ + L EK + ++F
Sbjct: 327 LNDPIQVTIGSLELAASHTITQLVEVIDEFSK----RDRLVKHLESALNEKDNKILVFAS 382
Query: 359 TKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418
TK + + L+ G+ I G Q ERD ++ EF+ G T ++++TDV ARG D +
Sbjct: 383 TKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKG 442
Query: 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 469
+ ++NYD P G + E Y+HRIGR GR G G + +G+ +
Sbjct: 443 ITHVINYDMP---G-----NIEDYVHRIGRTGRGGASGTAISFFTEGNSKL 485
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 398 (145.2 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 131/434 (30%), Positives = 212/434 (48%)
Query: 53 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSAT-TFEDLNLSPEL 111
SE S AE +V+ +E+K+ F E + T D SA +F++ NLS +
Sbjct: 259 SEPDSDAESEVDAE--EEAKRKAFFAPEEK-------TDEDAATNSAKRSFQEFNLSRPI 309
Query: 112 LKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNL 169
L+GL + F P+ IQ ++P+ L ++++ A GSGKT FV+ +L R+ P
Sbjct: 310 LRGL-AAVNFTNPTPIQQKTIPVALLG--KDIVGSAVTGSGKTAAFVVPILERLLFRPR- 365
Query: 170 KAP--QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQ 225
K P + + PTRELA+Q V K+ +T IT V S + KRP
Sbjct: 366 KVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRP----D 421
Query: 226 VVIGTPGT-IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284
V+I TPG I ++ L+ILV DEAD ML++ GF D+ I+ I +S Q
Sbjct: 422 VIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLED-GFADELNEILTTIPKSR---Q 477
Query: 285 VLLFSATFNETVKNFVTRIVKDYNQLFVK-KEELSLESVKQYKVYCPDELAKVMVIRDRI 343
+LFSAT ++V + + +L V K+ ++ V+++ P K + +
Sbjct: 478 TMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRL---GYL 534
Query: 344 FELGEKM--GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401
L +++ G+ I+F R K A + G + + G+ QE+R K V+ F+DG
Sbjct: 535 LHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNV 594
Query: 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461
L++TD+ +RG D + V ++NY+ P H E+Y+HR+GR R GR G +
Sbjct: 595 NFLLATDLASRGLDIKGVETVINYEAPQSH--------EIYVHRVGRTARAGRSGRACTI 646
Query: 462 LMDGDDMIIMEKIE 475
+ D ++ ++
Sbjct: 647 AAEPDRKVVKAAVK 660
Score = 39 (18.8 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 70 ESKKVNKFLDEAED 83
E +K K LDE ED
Sbjct: 158 EKEKKKKHLDECED 171
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 406 (148.0 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 122/412 (29%), Positives = 201/412 (48%)
Query: 59 AELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVE 118
AEL+ T E+ +N D ED ++T + GD P TF D++L L +
Sbjct: 115 AELEPV-FTEQENTGIN--FDAYEDIPVET-SGGDVP-PPVNTFADIDLGDALNLNIR-R 168
Query: 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQ--- 173
K+ +P+ +Q ++P++L R+L+A A+ GSGKT F ++S + D +++ P+
Sbjct: 169 CKYVRPTPVQRHAIPILLAE--RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSR 226
Query: 174 -----ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVI 228
A+ + PTRELA Q + +K TG+ + V T + +++
Sbjct: 227 AVYPFAVILSPTRELACQIHDEAKKFSYQTGV--KVVVAYGGTPIHQQLRELERGCDILV 284
Query: 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS-GHCQVLL 287
TPG + + ++ ++ L DEAD MLD GF +I++ ++ G Q +L
Sbjct: 285 ATPGRLNDLLERARVSMQMIRFLALDEADRMLD-MGFEPQIRKIVEQMDMPPRGVRQTML 343
Query: 288 FSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP--DELAKVMVIRDRIFE 345
FSATF ++ + +Y L V + S + + Q + D+ + +M + E
Sbjct: 344 FSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRE 403
Query: 346 LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405
+K T++FV TK A L L + T+I G Q+ER+ ++ FK G T +L+
Sbjct: 404 TQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILV 463
Query: 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457
+TDV ARG D V +VN+D P D + Y+HRIGR GR G+ G+
Sbjct: 464 ATDVAARGLDIPHVAHVVNFDLP--------NDIDDYVHRIGRTGRAGKSGI 507
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 398 (145.2 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 131/454 (28%), Positives = 216/454 (47%)
Query: 61 LDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMK 120
++V L ++VN + E E ++K G T+ +S ++L L +
Sbjct: 336 VEVPELAKMTQEEVNVYRLEMEGITVK----GKGCPKPIKTWVQCGISMKILTALK-KHG 390
Query: 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-DPNL----KAPQAL 175
++KP+ IQ+ ++P I+ R+LI A+ GSGKT F+L M + D + P A+
Sbjct: 391 YEKPTPIQSQAIPAIMNG--RDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAV 448
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNYVPISKRPPVTAQVVIGTPGTI 234
+ PTRELA+Q + +K K G+ C T + + KR A++++ TPG +
Sbjct: 449 IMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRG---AEIIVCTPGRM 505
Query: 235 KKWMSAKK---LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291
++A R+ +V DEAD M D GF +RI+ ++ Q ++FSAT
Sbjct: 506 IDMLAANNGRVTNLRRVTYVVLDEADRMFD-MGFEPQVMRIVDNVRPDR---QTVMFSAT 561
Query: 292 FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 351
F ++ RI+ ++ V + V+Q+ + +E K + + + + EK G
Sbjct: 562 FPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEE-NKFLKLLELLGHYQEK-G 619
Query: 352 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411
IIFV + A L K L Y ++ G Q +RD I+ +FK+G ++L++T V A
Sbjct: 620 SVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 679
Query: 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI-- 469
RG D +Q+ L+VNY P H E Y+HR GR GR G KG + + +
Sbjct: 680 RGLDVKQLMLVVNYSCP----NHYED----YVHRAGRTGRAGNKGFAYTFITEDQARYAG 731
Query: 470 -IMEKIERYFDIKVTEVRNSDEDFKAALKAAGLL 502
I++ +E + ++ DFK KA G L
Sbjct: 732 DIIKALELSGNPIPADLEKLWADFKEQQKAEGKL 765
Score = 43 (20.2 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 53 SEDKSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGD 93
+E++S ++ EG+ + + KK K D+ E+ K D
Sbjct: 113 TENRSRSKERTEGVEVSKEKKKEK--DDKEEEKDKDAKNFD 151
Score = 38 (18.4 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 54 EDKSTAELDVEGLTIDESK--KVNKFLDEAED 83
+D+ TAE + EG +++ + ++ +++E ++
Sbjct: 205 DDEETAEGEKEGNEVEDEELDPLDAYMEEVKE 236
Score = 37 (18.1 bits), Expect = 6.5e-37, Sum P(2) = 6.5e-37
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 52 TSEDKSTAELDVEGLTI 68
T E+ + L++EG+T+
Sbjct: 345 TQEEVNVYRLEMEGITV 361
>WB|WBGene00020284 [details] [associations]
symbol:mel-46 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006898
GO:GO:0040010 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K13131 GeneTree:ENSGT00530000062880 EMBL:CU457744 EMBL:EU051652
RefSeq:NP_001255908.1 RefSeq:NP_001255909.1 UniGene:Cel.7369
ProteinModelPortal:G5ED26 SMR:G5ED26 EnsemblMetazoa:T06A10.1a
EnsemblMetazoa:T06A10.1b GeneID:178469 KEGG:cel:CELE_T06A10.1
CTD:178469 WormBase:T06A10.1a WormBase:T06A10.1b OMA:SATYPRN
NextBio:901260 Uniprot:G5ED26
Length = 973
Score = 413 (150.4 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 114/370 (30%), Positives = 184/370 (49%)
Query: 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157
S TFE L + + L+ L +F +PS +QA ++P+ L R+++ QA++G+GKT F
Sbjct: 20 SNCTFESLMIGQKTLERLK-NSQFDRPSPVQARAIPVGLLG--RDMLVQAKSGTGKTLVF 76
Query: 158 VLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAV--PTDSTNYVP 215
+ + +D Q + + PTRE+++Q E +RK+ TG + V N +
Sbjct: 77 SVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP-TGARTSVYVGGSAHKLNLID 135
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275
+ + P Q+VIGTPG I + + + S + V DEAD ++DE FRDD I+
Sbjct: 136 LKQTRP---QIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEV-FRDDINIIINS 191
Query: 276 IERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY-CPDELA 334
+ + QV +FSAT+ + N ++ ++D + +++ L +KQY V C L
Sbjct: 192 LPQIR---QVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQYVVAKCSPMLE 248
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
K+ + I + Q ++F + + LK G +VT + A Q++R V
Sbjct: 249 KLTHVLKSI-----RYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKDRQLAVD 303
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
+ + ++L+S+D+ ARG D VNL+VN D E Y HRIGRA RFG
Sbjct: 304 QLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANE--------ETYFHRIGRAARFGA 355
Query: 455 KGVVFNLLMD 464
G LL D
Sbjct: 356 HGAAVTLLED 365
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 407 (148.3 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 120/397 (30%), Positives = 186/397 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 70 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 128
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 129 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 187 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 244
Query: 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312
DEAD MLD GF +I+ I Q L++SAT+ + V+ ++DY Q+ V
Sbjct: 245 LDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVRQLAEDFLRDYTQINV 300
Query: 313 KKEELSLE-SVKQYKVYCPDELA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369
ELS ++ Q C + K++ + + I + EK +TIIFV TK L +
Sbjct: 301 GNLELSANHNILQIVDVCMESEKDHKLIQLMEEI--MAEKENKTIIFVETKRRCDDLTRR 358
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429
++ G+ I G Q ERD ++ EF+ G +LI+TDV +RG D + V ++NYD P
Sbjct: 359 MRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP- 417
Query: 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR R KG + G+
Sbjct: 418 -------NSSEDYVHRIGRTARSTNKGTAYTFFTPGN 447
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 407 (148.3 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 120/397 (30%), Positives = 186/397 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 70 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 128
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 129 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 187 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 244
Query: 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312
DEAD MLD GF +I+ I Q L++SAT+ + V+ ++DY Q+ V
Sbjct: 245 LDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVRQLAEDFLRDYTQINV 300
Query: 313 KKEELSLE-SVKQYKVYCPDELA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369
ELS ++ Q C + K++ + + I + EK +TIIFV TK L +
Sbjct: 301 GNLELSANHNILQIVDVCMESEKDHKLIQLMEEI--MAEKENKTIIFVETKRRCDDLTRR 358
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429
++ G+ I G Q ERD ++ EF+ G +LI+TDV +RG D + V ++NYD P
Sbjct: 359 MRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP- 417
Query: 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR R KG + G+
Sbjct: 418 -------NSSEDYVHRIGRTARSTNKGTAYTFFTPGN 447
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 407 (148.3 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 120/397 (30%), Positives = 186/397 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 70 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 128
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 129 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 187 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 244
Query: 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312
DEAD MLD GF +I+ I Q L++SAT+ + V+ ++DY Q+ V
Sbjct: 245 LDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVRQLAEDFLRDYTQINV 300
Query: 313 KKEELSLE-SVKQYKVYCPDELA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369
ELS ++ Q C + K++ + + I + EK +TIIFV TK L +
Sbjct: 301 GNLELSANHNILQIVDVCMESEKDHKLIQLMEEI--MAEKENKTIIFVETKRRCDDLTRR 358
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429
++ G+ I G Q ERD ++ EF+ G +LI+TDV +RG D + V ++NYD P
Sbjct: 359 MRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP- 417
Query: 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR R KG + G+
Sbjct: 418 -------NSSEDYVHRIGRTARSTNKGTAYTFFTPGN 447
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 116/372 (31%), Positives = 190/372 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F L LS +L + ++ + KP+ IQ ++P++L +++IA A+ G+GKT FVL
Sbjct: 2 SFSTLKLSTPILNAI-ADLGYTKPTAIQQKAIPVVLAG--KDIIAAAQTGTGKTASFVLP 58
Query: 161 MLSRVDPNLKAP---------QALCICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDS 210
+L +++ K +AL + PTRELA+Q + + K+ I+S D+
Sbjct: 59 LLEQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDA 118
Query: 211 TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270
+R +++ TPG + + L F L +LV DEAD MLD GF DD
Sbjct: 119 QEQ---KQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLD-MGFIDD-- 172
Query: 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330
I K IER H Q LLFSAT +E V+ R + ++ + ++ S ++Q+ V
Sbjct: 173 -INKIIERLPEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTV- 230
Query: 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD 390
D+ K ++ I + Q +IF+ TK+ A+ L L+ G +I Q+ R+
Sbjct: 231 DKANKSALLSHIITT--QNWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIRE 288
Query: 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450
KI+ +FK G + L++T + ARG D +++ ++NYD P + + Y+HRIGR G
Sbjct: 289 KILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQ--------VDDYIHRIGRTG 340
Query: 451 RFGRKGVVFNLL 462
R G G +L+
Sbjct: 341 RAGASGEAISLV 352
>TAIR|locus:2148027 [details] [associations]
symbol:UAP56b "homolog of human UAP56 b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
Length = 486
Score = 244 (91.0 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 54/178 (30%), Positives = 98/178 (55%)
Query: 309 QLFVKKE-ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH 367
+++V E +L+L + Q+ + E+ K + D + L Q +IFV++ + A+ L+
Sbjct: 308 EIYVDDEAKLTLHGLVQHYIKL-SEMEKNRKLNDLLDALD--FNQVVIFVKSVSRAAELN 364
Query: 368 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP 427
K L + + I QEER K FK+G ++L++TD++ RG D ++VN+++NYD
Sbjct: 365 KLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDM 424
Query: 428 PVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
P + YLHR+GRAGRFG KG+ + D ++ +++ F++ + E+
Sbjct: 425 P--------DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKEL 474
Score = 227 (85.0 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 71/253 (28%), Positives = 120/253 (47%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
+E +KV ++ ++K G ++ F D L PELL+ + V+ F+ PS++Q
Sbjct: 19 EEDEKVPDSGNKVNGEAVKKGYVG----IHSSGFRDFLLKPELLRAI-VDSGFEHPSEVQ 73
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188
+P + ++I QA++G GKT FVL L +++P+ AL +C TRELA Q
Sbjct: 74 HECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQIC 131
Query: 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKR--PPVTAQVVIGTPGTIKKWMSAKKLGFS 246
+ + T + +V N + I K +V+GTPG + K L
Sbjct: 132 NEFVRFSTYLPDT-KVSVFYGGVN-IKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLK 189
Query: 247 RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKD 306
++ + DE D ML+ R D I K QV++FSAT ++ ++ + K
Sbjct: 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK---QVMMFSATLSKEIRP----VCKK 242
Query: 307 YNQLFVKKEELSL 319
+ Q F++ E +S+
Sbjct: 243 FMQDFLENETVSV 255
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 126/397 (31%), Positives = 195/397 (49%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
+ + T F DLNL+P+++ GL M F + IQA SLP++L +L QA+ G GKT
Sbjct: 5 HLTETKFADLNLAPQVVTGLEA-MGFDYCTSIQAKSLPVLLQGT--DLAGQAQTGEGKTI 61
Query: 156 CFVLG----MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST 211
F+ +L + P P+AL + PTRELAIQ +M K TG+ V
Sbjct: 62 AFLAATFHHLLQKEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGL--RLGVVYGGE 119
Query: 212 NYVPISKRPPVTA--QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDS 269
Y S+R + A ++IGT G + +M ++++V DEAD M D GF D
Sbjct: 120 GYE--SQRLELEAGVDILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFD-LGFIKD- 175
Query: 270 LRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 329
+R M D + +LFSAT + VK + D + V+ E+ + + + +++
Sbjct: 176 IRYMFDKMPPATERLSMLFSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISE-ELFY 234
Query: 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 389
P K+ +++ I E + + I+F TK+ + L V + G Q++R
Sbjct: 235 PSNEDKMTLLQTLIEE--DWPEKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKR 292
Query: 390 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 449
KI++EF DG +L++TDV ARG V + NYD P DC+ Y+HRIGR
Sbjct: 293 LKILEEFTDGTVDILVATDVAARGLHIPSVTHVFNYDLP--------DDCQDYVHRIGRT 344
Query: 450 GRFGRKGVVFNLLMDGDDMIIMEKIERYF--DIKVTE 484
GR G G +L + + + +IE Y D+ VT+
Sbjct: 345 GRAGETGHAISLACE-QYVFNLPEIETYIGHDLPVTK 380
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 404 (147.3 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 124/413 (30%), Positives = 200/413 (48%)
Query: 69 DESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ 128
++ V F D ED I+T +GD TF +++L L + K+ KP+ +Q
Sbjct: 131 EQDNTVINF-DAYEDIPIET--SGDNVPPPVNTFAEIDLGEALNLNIR-RCKYVKPTPVQ 186
Query: 129 AISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQ--------ALCIC 178
++P++L R+L+A A+ GSGKT F ++S + D +++ P+ A+ +
Sbjct: 187 RHAIPILLEG--RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILS 244
Query: 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM 238
PTRELA Q + +K TG+ + V T + +++ TPG + +
Sbjct: 245 PTRELASQIHDEAKKFSYQTGV--KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL 302
Query: 239 SAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS-GHCQVLLFSATFNETVK 297
++ ++ L DEAD MLD GF +I++ ++ G Q LLFSATF ++
Sbjct: 303 ERARVSMQMIRFLALDEADRMLD-MGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQ 361
Query: 298 NFVTRIVKDYNQLFVKKEELSLESVKQYKVYC--PDELAKVMVIRDRIFELG--EKMGQT 353
+ +Y L V + S + + Q + D+ + +M + E G K T
Sbjct: 362 RLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALT 421
Query: 354 IIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 413
++FV TK A +L L G+ T+I G Q+ER+ +K FK G T +L++TDV ARG
Sbjct: 422 LVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARG 481
Query: 414 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
D V +VN+D P D + Y+HRIGR GR G+ G+ DG+
Sbjct: 482 LDIPHVAHVVNFDLP--------NDIDDYVHRIGRTGRAGKSGLATAFFNDGN 526
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 407 (148.3 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 120/397 (30%), Positives = 186/397 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 149 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 207
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 208 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 265
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 266 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 323
Query: 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312
DEAD MLD GF +I+ I Q L++SAT+ + V+ ++DY Q+ V
Sbjct: 324 LDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVRQLAEDFLRDYTQINV 379
Query: 313 KKEELSLE-SVKQYKVYCPDELA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369
ELS ++ Q C + K++ + + I + EK +TIIFV TK L +
Sbjct: 380 GNLELSANHNILQIVDVCMESEKDHKLIQLMEEI--MAEKENKTIIFVETKRRCDDLTRR 437
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429
++ G+ I G Q ERD ++ EF+ G +LI+TDV +RG D + V ++NYD P
Sbjct: 438 MRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP- 496
Query: 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR R KG + G+
Sbjct: 497 -------NSSEDYVHRIGRTARSTNKGTAYTFFTPGN 526
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 407 (148.3 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 120/397 (30%), Positives = 186/397 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 149 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 207
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 208 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 265
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 266 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 323
Query: 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312
DEAD MLD GF +I+ I Q L++SAT+ + V+ ++DY Q+ V
Sbjct: 324 LDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVRQLAEDFLRDYTQINV 379
Query: 313 KKEELSLE-SVKQYKVYCPDELA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369
ELS ++ Q C + K++ + + I + EK +TIIFV TK L +
Sbjct: 380 GNLELSANHNILQIVDVCMESEKDHKLIQLMEEI--MAEKENKTIIFVETKRRCDDLTRR 437
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429
++ G+ I G Q ERD ++ EF+ G +LI+TDV +RG D + V ++NYD P
Sbjct: 438 MRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP- 496
Query: 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR R KG + G+
Sbjct: 497 -------NSSEDYVHRIGRTARSTNKGTAYTFFTPGN 526
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 411 (149.7 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 133/452 (29%), Positives = 217/452 (48%)
Query: 61 LDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMK 120
++V L ++V+++ E E S+K G T+ +S ++L L +
Sbjct: 322 VEVPELARMSPEEVSEYRLELEGISVK----GKGCPKPIKTWVQCGISMKVLNALK-KHN 376
Query: 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-D--P--NLKAPQAL 175
++KP+ IQA ++P I++ R+LI A+ GSGKT F+L M + D P + P A+
Sbjct: 377 YEKPTPIQAQAIPAIMSG--RDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAV 434
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNYVPISKRPPVTAQVVIGTPGTI 234
+ PTRELA+Q + +K K + C T + + KR A++++ TPG +
Sbjct: 435 IMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRG---AEIIVCTPGRM 491
Query: 235 KKWMSAKK---LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291
+ A R+ +V DEAD M D GF +RI+ ++ Q ++FSAT
Sbjct: 492 IDMLGANNGRVTNLRRVTYVVIDEADRMFD-MGFEPQVMRIVDNVRPDR---QTVMFSAT 547
Query: 292 FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMG 351
F T++ RI+ ++ V + V+Q+ + +E K + + + + EK G
Sbjct: 548 FPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEE-KKFLKLLEILGHYQEK-G 605
Query: 352 QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411
IIFV + A L K L Y ++ G Q +RD I+ +FK+G ++L++T V A
Sbjct: 606 SVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAA 665
Query: 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI-- 469
RG D +Q+ L+VNY P H E Y+HR GR GR G KG + + +G
Sbjct: 666 RGLDVKQLILVVNYSCP----NHYED----YVHRAGRTGRAGNKGYAYTFITEGQARYSG 717
Query: 470 -IMEKIERYFDIKVTEVRNSDEDFKAALKAAG 500
I++ +E E+ +FK KA G
Sbjct: 718 DILKALELSGSSVPAELEQLWTNFKEQQKAEG 749
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 116/366 (31%), Positives = 184/366 (50%)
Query: 100 TTFEDLN-LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV 158
T F LN L P L L E+ + + +QA +LP IL +++ QA+ GSGKT F
Sbjct: 2 TAFSTLNVLPPAQLTNLN-ELGYLTMTPVQAAALPAILAG--KDVRVQAKTGSGKTAAFG 58
Query: 159 LGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK---HTGITSECAVPTDSTNYVP 215
LG+L ++D +L QAL +CPTRELA Q LR++ + +T I + C
Sbjct: 59 LGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118
Query: 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275
+ P +++ TPG + + + L LV DEAD MLD GF D + D
Sbjct: 119 LQHAP----HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD-MGFSD----AIDD 169
Query: 276 IER-SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 334
+ R + Q LLFSAT+ E + R+ +D + + + +L ++Q + Y
Sbjct: 170 VIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTD-ALPPIEQ-QFYETSSKG 227
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
K+ +++ R+ L + ++F TK A+ AL + G ++ G Q +RD+ +
Sbjct: 228 KIPLLQ-RLLSLHQP-SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLV 285
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
F +G +VL++TDV ARG D + + L+VN++ L D EV++HRIGR R G
Sbjct: 286 RFANGSARVLVATDVAARGLDIKSLELVVNFE--------LAWDPEVHVHRIGRTARAGN 337
Query: 455 KGVVFN 460
G+ +
Sbjct: 338 SGLAIS 343
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 121/391 (30%), Positives = 203/391 (51%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F+ L LSP++L+ + E +++P+ IQ ++P +L R+L+A A+ G+GKT F L
Sbjct: 2 SFDSLGLSPDILRAV-AEQGYREPTPIQQQAIPAVLEG--RDLMASAQTGTGKTAGFTLP 58
Query: 161 MLSRV---DPNLKA--P-QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV 214
+L + P+ K P +AL + PTRELA Q E +R K+ I S S N
Sbjct: 59 LLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118
Query: 215 PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMK 274
+ R V V++ TPG + + +++ILV DEAD MLD GF D R++
Sbjct: 119 MMKLRGGV--DVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLD-MGFIHDIRRVLT 175
Query: 275 DIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 334
+ Q LLFSATF++ +K +++ + ++ V + + + V Q+ V+ D+
Sbjct: 176 KLPAKR---QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQH-VHFVDKKR 231
Query: 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394
K ++ I + G Q ++F RTK+ A+ L + L G I G Q R + +
Sbjct: 232 KRELLSHMIGK-GNWQ-QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289
Query: 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454
+FK G +VL++TD+ ARG D +++ +VNY+ P ++ D Y+HRIGR GR
Sbjct: 290 DFKSGDIRVLVATDIAARGLDIEELPHVVNYELP-----NVPED---YVHRIGRTGRAAA 341
Query: 455 KGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485
G +L+ D+ ++ IE+ ++ +
Sbjct: 342 TGEALSLVCV-DEHKLLRDIEKLLKKEIPRI 371
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 118/379 (31%), Positives = 196/379 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L LS +LK + E + PS IQ ++P +L ++++A A+ G+GKT F L +
Sbjct: 3 FTSLGLSAPILKAIE-EKGYNTPSPIQLQAIPAVLAG--KDVMAAAQTGTGKTAGFTLPI 59
Query: 162 LSRV--DPNLKAPQ--ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
L + P ++A Q AL + PTRELA Q + + G+H + S AV P
Sbjct: 60 LELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKS--AVVFGGVKINPQM 117
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277
+R A +++ TPG + + + F +L+ILV DEAD MLD GF D +I+K +
Sbjct: 118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLD-MGFIRDIHKILKLLP 176
Query: 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337
Q LLFSATF+ ++ +V + ++ V + +V+Q +Y P ++ K
Sbjct: 177 EKR---QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQC-IY-PADVKKKP 231
Query: 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 397
+ ++ + G Q ++F+RTK+ A+ L L + G I G Q R + + +FK
Sbjct: 232 DMLVKLVKEGNWQ-QVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFK 290
Query: 398 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457
G ++L++TD+ ARG D Q+ +VN++ P E Y+HRIGR GR G G
Sbjct: 291 AGEVRILVATDIAARGIDIPQLPQVVNFELP--------KIAEDYVHRIGRTGRAGEVGK 342
Query: 458 VFNLL--MDGDDMIIMEKI 474
+L+ ++ ++ +E++
Sbjct: 343 AISLVSAIEAPELFAIERL 361
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 118/379 (31%), Positives = 196/379 (51%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F L LS +LK + E + PS IQ ++P +L ++++A A+ G+GKT F L +
Sbjct: 3 FTSLGLSAPILKAIE-EKGYNTPSPIQLQAIPAVLAG--KDVMAAAQTGTGKTAGFTLPI 59
Query: 162 LSRV--DPNLKAPQ--ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217
L + P ++A Q AL + PTRELA Q + + G+H + S AV P
Sbjct: 60 LELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKS--AVVFGGVKINPQM 117
Query: 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277
+R A +++ TPG + + + F +L+ILV DEAD MLD GF D +I+K +
Sbjct: 118 QRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLD-MGFIRDIHKILKLLP 176
Query: 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337
Q LLFSATF+ ++ +V + ++ V + +V+Q +Y P ++ K
Sbjct: 177 EKR---QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQC-IY-PADVKKKP 231
Query: 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK 397
+ ++ + G Q ++F+RTK+ A+ L L + G I G Q R + + +FK
Sbjct: 232 DMLVKLVKEGNWQ-QVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFK 290
Query: 398 DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457
G ++L++TD+ ARG D Q+ +VN++ P E Y+HRIGR GR G G
Sbjct: 291 AGEVRILVATDIAARGIDIPQLPQVVNFELP--------KIAEDYVHRIGRTGRAGEVGK 342
Query: 458 VFNLL--MDGDDMIIMEKI 474
+L+ ++ ++ +E++
Sbjct: 343 AISLVSAIEAPELFAIERL 361
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 407 (148.3 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 120/397 (30%), Positives = 186/397 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 151 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 209
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 210 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 267
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 268 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 325
Query: 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312
DEAD MLD GF +I+ I Q L++SAT+ + V+ ++DY Q+ V
Sbjct: 326 LDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVRQLAEDFLRDYTQINV 381
Query: 313 KKEELSLE-SVKQYKVYCPDELA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369
ELS ++ Q C + K++ + + I + EK +TIIFV TK L +
Sbjct: 382 GNLELSANHNILQIVDVCMESEKDHKLIQLMEEI--MAEKENKTIIFVETKRRCDDLTRR 439
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429
++ G+ I G Q ERD ++ EF+ G +LI+TDV +RG D + V ++NYD P
Sbjct: 440 MRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP- 498
Query: 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR R KG + G+
Sbjct: 499 -------NSSEDYVHRIGRTARSTNKGTAYTFFTPGN 528
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 407 (148.3 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 120/397 (30%), Positives = 186/397 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 151 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 209
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 210 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 267
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 268 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 325
Query: 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312
DEAD MLD GF +I+ I Q L++SAT+ + V+ ++DY Q+ V
Sbjct: 326 LDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVRQLAEDFLRDYTQINV 381
Query: 313 KKEELSLE-SVKQYKVYCPDELA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369
ELS ++ Q C + K++ + + I + EK +TIIFV TK L +
Sbjct: 382 GNLELSANHNILQIVDVCMESEKDHKLIQLMEEI--MAEKENKTIIFVETKRRCDDLTRR 439
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429
++ G+ I G Q ERD ++ EF+ G +LI+TDV +RG D + V ++NYD P
Sbjct: 440 MRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP- 498
Query: 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR R KG + G+
Sbjct: 499 -------NSSEDYVHRIGRTARSTNKGTAYTFFTPGN 528
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 116/355 (32%), Positives = 186/355 (52%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F L LS L++ + ++ +QKP+ IQ ++P+IL R+LIA A+ G+GKT FVL
Sbjct: 2 SFSQLGLSDVLVQTV-AQLGYQKPTHIQTQAIPVILQG--RDLIAAAQTGTGKTASFVLP 58
Query: 161 MLSRV----DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
+L ++ K +AL + PTRELA+Q E + + GK TG+ S AV +
Sbjct: 59 ILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKS-LAV-FGGVDEQAQ 116
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
+R V++ TPG + + + F ++++V DEAD MLD GF + I K I
Sbjct: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLD-MGFIES---INKII 172
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV 336
+ Q LLFSAT + V+ V+D +++ + + S ++ Q+ + D+ K
Sbjct: 173 DCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV-DKDTKS 231
Query: 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396
++ I E ++ Q +IF+ TK+ A+ L L+ G Q R +++++F
Sbjct: 232 ALLSHLINE--QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDF 289
Query: 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
K G + L++T V ARG D Q++ +VNYD P P E Y+HRIGR GR
Sbjct: 290 KSGKIKYLVATGVAARGIDIDQLSRVVNYDLPF-------PADE-YVHRIGRTGR 336
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 116/355 (32%), Positives = 186/355 (52%)
Query: 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLG 160
+F L LS L++ + ++ +QKP+ IQ ++P+IL R+LIA A+ G+GKT FVL
Sbjct: 2 SFSQLGLSDVLVQTV-AQLGYQKPTHIQTQAIPVILQG--RDLIAAAQTGTGKTASFVLP 58
Query: 161 MLSRV----DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
+L ++ K +AL + PTRELA+Q E + + GK TG+ S AV +
Sbjct: 59 ILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKS-LAV-FGGVDEQAQ 116
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
+R V++ TPG + + + F ++++V DEAD MLD GF + I K I
Sbjct: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLD-MGFIES---INKII 172
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV 336
+ Q LLFSAT + V+ V+D +++ + + S ++ Q+ + D+ K
Sbjct: 173 DCLPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV-DKDTKS 231
Query: 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396
++ I E ++ Q +IF+ TK+ A+ L L+ G Q R +++++F
Sbjct: 232 ALLSHLINE--QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDF 289
Query: 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451
K G + L++T V ARG D Q++ +VNYD P P E Y+HRIGR GR
Sbjct: 290 KSGKIKYLVATGVAARGIDIDQLSRVVNYDLPF-------PADE-YVHRIGRTGR 336
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 392 (143.0 bits), Expect = 4.1e-37, Sum P(2) = 4.1e-37
Identities = 126/416 (30%), Positives = 209/416 (50%)
Query: 61 LDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMK 120
++V+ ++ ++VN + E E +K V D P + L+ ++L + ++
Sbjct: 495 IEVKDISRMTQEEVNTYRKELE---LK-VHGKDVP-RPIKFWHQTGLTSKILDTMK-KLN 548
Query: 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKA---PQAL 175
++KP IQ +LP+I++ R+ I A+ GSGKT FVL ML + P ++A P L
Sbjct: 549 YEKPMPIQTQALPIIMSG--RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 606
Query: 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGT 233
+ PTREL Q +RK K GI C VP + V IS+ T ++V+ TPG
Sbjct: 607 VMAPTRELVQQIHSDIRKFSKPLGI--RC-VPVYGGSGVAQQISELKRGT-EIVVCTPGR 662
Query: 234 IKKWM---SAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSA 290
+ + S K R+ LV DEAD M D GF RI+++I Q +LFSA
Sbjct: 663 MIDILCTSSGKITNLRRVTFLVMDEADRMFD-MGFEPQITRIIQNIRPER---QTVLFSA 718
Query: 291 TFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 350
TF V+ +++ ++ V + + + Q P E + + + + + E EK
Sbjct: 719 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-ESDRFLRLLELLGEWSEK- 776
Query: 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410
G+ ++FV+++ AL++ + Y ++ G Q +R+ + +FK+ + +LI+T V
Sbjct: 777 GKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVA 836
Query: 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
ARG D +++ L+VN+D P H E Y+HR+GR GR GRKG + + D
Sbjct: 837 ARGLDVKELELVVNFDAP----NHYED----YVHRVGRTGRAGRKGCAVTFISEDD 884
Score = 47 (21.6 bits), Expect = 4.1e-37, Sum P(2) = 4.1e-37
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 54 EDKSTAELDVEGLTIDESKKVNKFLD-EAEDSSIKTVTTGD 93
E+KS E+DV+ T E+ K +D E E ++ + + GD
Sbjct: 332 EEKSETEMDVDEETKPENDGDAKMVDLENETAATVSESGGD 372
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 410 (149.4 bits), Expect = 4.2e-37, P = 4.2e-37
Identities = 124/388 (31%), Positives = 196/388 (50%)
Query: 87 KTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQ 146
+ TTG+ TFE L PE+L+ L + F P+ IQA + P+ L R+++A
Sbjct: 422 EVTTTGENIPAPYITFESSGLPPEILREL-LSAGFPSPTPIQAQTWPIALQS--RDIVAI 478
Query: 147 ARNGSGKTT-----CFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201
A+ GSGKT F+L R D P L + PTRELA Q + + G+ + I+
Sbjct: 479 AKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRIS 537
Query: 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261
C P K A +V+ TPG + + K + F ++ +LV DEAD MLD
Sbjct: 538 CTCLYGGAPKG--PQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLD 595
Query: 262 EAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKK-EELSL- 319
GF +I+ +I Q L+++AT+ + V+ + ++ + Q+ + + +EL+
Sbjct: 596 -MGFEPQIRKIVNEIPPRR---QTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAAN 651
Query: 320 ESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKAL-KDFGYEVT 378
+++ QY P ++ K + ++I E+ + IIF TK L +++ + FG V
Sbjct: 652 KAITQYVEVVP-QMEKERRL-EQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAVV- 708
Query: 379 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPD 438
I G Q ERD ++ +F+ G + VLI+TDV ARG D + + +++NYD P G
Sbjct: 709 -IHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPT--G------ 759
Query: 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR GR G GV F + D
Sbjct: 760 VEDYVHRIGRTGRAGATGVAFTFFTEQD 787
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 121/403 (30%), Positives = 204/403 (50%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
+ S F DL L PE+ + L E F+ + IQA+SLP++L +++ QA+ G+GKT
Sbjct: 5 HLSNQKFADLPLHPEVKQAL-AENGFEFCTPIQALSLPVLLQS--KDIAGQAQTGTGKTM 61
Query: 156 CFVLG----MLSRVDPN---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
F++ +LS P L P+A+ + PTRELAIQ + + KHT + + +
Sbjct: 62 AFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRL--KVGIVY 119
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
+Y K ++IGT G I ++ + + ++ +V DEAD M D GF D
Sbjct: 120 GGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFD-LGFIKD 178
Query: 269 SLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY 328
+ + + + +LFSAT + V+ + D ++ + EE + +++K+ +++
Sbjct: 179 IRFLFRRMPNADQRLN-MLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE-EIF 236
Query: 329 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEE 388
P + K+ ++ I E + + I+F TK+S L L+ G+ V + G Q++
Sbjct: 237 YPSQEDKMRLLLTLIEE--DWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKK 294
Query: 389 RDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 448
R +I+++F G +L++TDV ARG V+ + NYD P DCE Y+HRIGR
Sbjct: 295 RIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLP--------DDCEDYVHRIGR 346
Query: 449 AGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
GR G KGV + + + + + IE Y + + V N D D
Sbjct: 347 TGRAGNKGVSVSFACE-EYALNLPAIETYINHSIP-VSNYDRD 387
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 121/403 (30%), Positives = 204/403 (50%)
Query: 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTT 155
+ S F DL L PE+ + L E F+ + IQA+SLP++L +++ QA+ G+GKT
Sbjct: 5 HLSNQKFADLPLHPEVKQAL-AENGFEFCTPIQALSLPVLLQS--KDIAGQAQTGTGKTM 61
Query: 156 CFVLG----MLSRVDPN---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPT 208
F++ +LS P L P+A+ + PTRELAIQ + + KHT + + +
Sbjct: 62 AFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRL--KVGIVY 119
Query: 209 DSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268
+Y K ++IGT G I ++ + + ++ +V DEAD M D GF D
Sbjct: 120 GGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFD-LGFIKD 178
Query: 269 SLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY 328
+ + + + +LFSAT + V+ + D ++ + EE + +++K+ +++
Sbjct: 179 IRFLFRRMPNADQRLN-MLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKE-EIF 236
Query: 329 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEE 388
P + K+ ++ I E + + I+F TK+S L L+ G+ V + G Q++
Sbjct: 237 YPSQEDKMRLLLTLIEE--DWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKK 294
Query: 389 RDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 448
R +I+++F G +L++TDV ARG V+ + NYD P DCE Y+HRIGR
Sbjct: 295 RIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLP--------DDCEDYVHRIGR 346
Query: 449 AGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491
GR G KGV + + + + + IE Y + + V N D D
Sbjct: 347 TGRAGNKGVSVSFACE-EYALNLPAIETYINHSIP-VSNYDRD 387
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 120/366 (32%), Positives = 181/366 (49%)
Query: 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM 161
F + L ++ + LY KFQKP+ IQ+IS P+ ++ R++I+ A+ GSGKT F+L
Sbjct: 132 FNEAPLPGQIHELLYG--KFQKPTVIQSISWPIAMSG--RDIISIAKTGSGKTLAFMLPA 187
Query: 162 LSRVDPNL-----KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216
L + + P L + PTRELA Q EV G+ C S P
Sbjct: 188 LVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKG--PQ 245
Query: 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276
++ +V+ TPG + ++ + LV DEAD MLD GF +I+ I
Sbjct: 246 ARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLD-MGFEPQIKKIIGQI 304
Query: 277 ERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQYKVYCPDEL-- 333
Q L+FSAT+ + V+ + KD L V EL+ ++ Q +
Sbjct: 305 RPDR---QTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQ 361
Query: 334 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIV 393
AK+M + + I + +K +TIIFV TK A L +A++ G+ I G Q ERD ++
Sbjct: 362 AKLMELLNHI--MNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVL 419
Query: 394 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 453
+EFK G T ++++TDV ARG D + ++NYD P + E Y+HRIGR GR
Sbjct: 420 QEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYP--------NNSEDYVHRIGRTGRSD 471
Query: 454 RKGVVF 459
+KG +
Sbjct: 472 KKGTAY 477
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 367 (134.2 bits), Expect = 5.2e-37, Sum P(2) = 5.2e-37
Identities = 108/360 (30%), Positives = 179/360 (49%)
Query: 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNL 169
+L+ L E+ F++P+ IQ ++P++L+ R A A GSGKT F+ ML ++ P+
Sbjct: 152 ILRNL-AELGFKEPTPIQRQAIPILLSG--RECFACAPTGSGKTFAFICPMLIKLKRPST 208
Query: 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAV-PTDSTNYVPISKRPPVTAQVVI 228
+A+ + P RELA Q +K+ K + P T SK + V+I
Sbjct: 209 DGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKT--ADFSK---LWCDVLI 263
Query: 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVL-- 286
TP +K+ + AKK+ S+++ LV DE+D + F L+ + + ++ + ++
Sbjct: 264 STPMRLKRAIKAKKIDLSKVEYLVLDESDKL-----FEQSLLKQIDCVVKACSNPSIIRS 318
Query: 287 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL 346
LFSAT ++V+ I+ D ++ + ++ + E+VKQ V+ E K++ +R E
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAE- 377
Query: 347 GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 406
+IFV++K A L+ LK I ER+ V +F+ G VLI+
Sbjct: 378 -SLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIA 436
Query: 407 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
TDV+ARG D + +N ++NYD P Y+HRIGR+GR GR G + D
Sbjct: 437 TDVIARGMDFKGINCVINYDFP--------DSASAYIHRIGRSGRAGRSGEAITFYTEQD 488
Score = 49 (22.3 bits), Expect = 5.2e-37, Sum P(2) = 5.2e-37
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 69 DESKKVNKFLDEAEDS 84
D +KKVN F++E ED+
Sbjct: 34 DSNKKVNFFVEEEEDT 49
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 401 (146.2 bits), Expect = 5.3e-37, P = 5.3e-37
Identities = 124/387 (32%), Positives = 194/387 (50%)
Query: 88 TVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQA 147
TV+ G P +FE PELL+ + + F P+ IQA S P+ + R+++A A
Sbjct: 147 TVSGGQVP-PPLMSFEATGFPPELLREV-LSAGFSAPTPIQAQSWPIAMQG--RDIVAIA 202
Query: 148 RNGSGKTTCFVL-GML--SRV-DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE 203
+ GSGKT +++ G L R+ + + P L + PTRELA Q E K G+ + I+
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 204 CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA 263
C P + A +V+ TPG + + +++ ++ LV DEAD MLD
Sbjct: 263 CLYGGAPKG--PQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD-M 319
Query: 264 GFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKK-EEL-SLES 321
GF +I+K+I Q L+++AT+ + V+ ++ + Q+ + +EL + +S
Sbjct: 320 GFEPQIRKIVKEIPTKR---QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKS 376
Query: 322 VKQY-KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKAL-KDFGYEVTT 379
+ Q+ +V P E + + ++I E + IIF TK L + L + FG
Sbjct: 377 ITQHIEVVAPMEKQRRL---EQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFG--AAA 431
Query: 380 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDC 439
I G Q ERD ++ +F+ G T VL++TDV ARG D + + +VNYD P +G
Sbjct: 432 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFP--NG------V 483
Query: 440 EVYLHRIGRAGRFGRKGVVFNLLMDGD 466
E Y+HRIGR GR G G F D D
Sbjct: 484 EDYVHRIGRTGRAGATGQAFTFFGDQD 510
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 408 (148.7 bits), Expect = 5.4e-37, P = 5.4e-37
Identities = 127/459 (27%), Positives = 222/459 (48%)
Query: 56 KSTAELDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGL 115
K ++ E + +V + +E + ++K + D P T+ ++ +++ L
Sbjct: 264 KKNFYIETEEIRRMTKAEVKAYREELDSITVKGI---DCP-KPIKTWAQCGVNLKMMNVL 319
Query: 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLK--- 170
+ ++ KP+ IQA ++P I++ R++I A+ GSGKT F+L M + P L+
Sbjct: 320 K-KFEYSKPTSIQAQAIPSIMSG--RDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGD 376
Query: 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVP-TDSTNYVPISKRPPVTAQVVIG 229
P A+ + PTRELA+Q + K K G+ C + + KR A++V+
Sbjct: 377 GPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRG---AEIVVC 433
Query: 230 TPGTIKKWMSA---KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVL 286
TPG + ++A K R+ LV DEAD M D+ GF ++++ +I Q +
Sbjct: 434 TPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDK-GFEPQIMKVVNNIRPDK---QTV 489
Query: 287 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL 346
LFSATF ++ +++ ++ V + + + Q V C + K + + + +
Sbjct: 490 LFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEH-QKFLKLLELLGMY 548
Query: 347 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLTQVLI 405
E+ G +I+FV + A + L GY V + G Q +RD + +FK G+ +VL+
Sbjct: 549 YEE-GSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLV 607
Query: 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465
+T V ARG D + + L+VNYD P H E Y+HR+GR GR GRKG + ++
Sbjct: 608 ATSVAARGLDVKNLILVVNYDCP----NHYED----YVHRVGRTGRAGRKGYAYTFVLPE 659
Query: 466 DDMIIMEKIERYFDIK----VTEVRNSDEDFKAALKAAG 500
+ +I R F+ +++ E FK+ + A G
Sbjct: 660 HQEKMAGEICRAFETAGCKPPADLKAMFERFKSEMAAEG 698
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 402 (146.6 bits), Expect = 6.0e-37, P = 6.0e-37
Identities = 121/399 (30%), Positives = 187/399 (46%)
Query: 78 LDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT 137
+DE TV GD F N P+ + + ++ F +P+ IQ P+ L+
Sbjct: 70 VDELRRKKEITVRGGDVCPKPVFAFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALS 128
Query: 138 PPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLR 192
R+++ A+ GSGKT ++L + ++ P L+ P L + PTRELA Q +V
Sbjct: 129 G--RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILV 252
GK + + S C P + ++ I TPG + ++ + K R LV
Sbjct: 187 DYGKCSRLKSTCIYGGAPKG--PQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLV 244
Query: 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312
DEAD MLD GF +I+ I Q L++SAT+ + V+ ++DY Q+ V
Sbjct: 245 LDEADRMLD-MGFEPQIRKIVDQIRPDR---QTLMWSATWPKEVRQLAEDFLRDYTQINV 300
Query: 313 KKEELSLE-SVKQYKVYCPDELA--KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369
ELS ++ Q C + K++ + + I + EK +TIIFV TK L +
Sbjct: 301 GNLELSANHNILQIVDVCMESEKDHKLIQLMEEI--MAEKENKTIIFVETKRRCDDLTRR 358
Query: 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG--FDQQQVNLIVNYDP 427
++ G+ I G Q ERD ++ EF+ G +LI+TDV +RG FD + V ++NYD
Sbjct: 359 MRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDY 418
Query: 428 PVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466
P E Y+HRIGR R KG + G+
Sbjct: 419 P--------NSSEDYVHRIGRTARSTNKGTAYTFFTPGN 449
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 400 (145.9 bits), Expect = 6.9e-37, P = 6.9e-37
Identities = 124/399 (31%), Positives = 190/399 (47%)
Query: 80 EAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP 139
EA ++ + G+TP +F ++ +L GL + + P+ IQ LP +L
Sbjct: 157 EAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAK-GIKNPTPIQVQGLPTVLAG- 214
Query: 140 YRNLIAQARNGSGKTTCFVLGMLS---RVDPNL-----KAPQALCICPTRELAIQNLEVL 191
R+LI A GSGKT FVL ++ + +L + P L ICP+RELA Q E++
Sbjct: 215 -RDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEII 273
Query: 192 RKMGKHTGITSECAVPTDST----NYVPISKRPPVTAQ---VVIGTPGTIKKWMSAKKLG 244
+ KH C +P + +P+S+ V ++ +V+ TPG + + K L
Sbjct: 274 QHYSKHL---QACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILT 330
Query: 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV-TRI 303
+ L DEAD M+D GF +D I + G Q LLFSAT + ++NF + +
Sbjct: 331 LDMCRYLCMDEADRMID-MGFEEDVRTIFSFFK---GQRQTLLFSATMPKKIQNFARSAL 386
Query: 304 VKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSA 363
VK + V + + +V Q Y E AKV+ + D + + + +IF K
Sbjct: 387 VKPVT-INVGRAGAASMNVTQQVEYVKQE-AKVVYLLDCLQKTAPPV---LIFAEKKQDV 441
Query: 364 SALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIV 423
+H+ L G E I G QEER + V ++ G VL++TDV ++G D V ++
Sbjct: 442 DCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVI 501
Query: 424 NYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 462
NYD P D E Y+HRIGR GR KG+ L+
Sbjct: 502 NYDMP--------DDIENYVHRIGRTGRSNTKGLATTLI 532
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 405 (147.6 bits), Expect = 7.2e-37, P = 7.2e-37
Identities = 118/377 (31%), Positives = 182/377 (48%)
Query: 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGS 151
GD T + FE+ P+ + + F KP+ IQA P+ ++ R+L+ A+ GS
Sbjct: 149 GDQVPTPSIEFEEGGF-PDYVMNEIRKQGFAKPTAIQAQGWPIAMSG--RDLVGVAQTGS 205
Query: 152 GKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECAV 206
GKT +VL + ++ P L+ P AL + PTRELA Q +V + G +T + + C
Sbjct: 206 GKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIF 265
Query: 207 PTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFR 266
V ++VI TPG + ++ R LV DEAD MLD GF
Sbjct: 266 GGAPKGQQARDLERGV--EIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD-MGFE 322
Query: 267 DDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE-SVKQY 325
+IM+ I QVL++SAT+ + V+ + +Y Q+ + LS ++ Q
Sbjct: 323 PQIRKIMQQIRPDR---QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQI 379
Query: 326 KVYCPDELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGAT 384
C DE K+M + + ++ E +TIIFV TK + + + G+ I G
Sbjct: 380 VDVC-DENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDK 438
Query: 385 IQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLH 444
Q+ERD ++ F++G +L++TDV ARG D V ++NYD P + E Y+H
Sbjct: 439 SQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYP--------SNSEDYVH 490
Query: 445 RIGRAGRFGRKGVVFNL 461
RIGR GR G + L
Sbjct: 491 RIGRTGRSNNTGTAYTL 507
WARNING: HSPs involving 656 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 502 484 0.00080 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 906
No. of states in DFA: 613 (65 KB)
Total size of DFA: 260 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.43u 0.22s 43.65t Elapsed: 00:00:02
Total cpu time: 43.50u 0.22s 43.72t Elapsed: 00:00:02
Start: Sat May 11 09:23:01 2013 End: Sat May 11 09:23:03 2013
WARNINGS ISSUED: 2