Query 010762
Match_columns 502
No_of_seqs 317 out of 2727
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 4.3E-76 9.4E-81 529.2 28.4 368 98-486 59-427 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 3.8E-74 8.3E-79 551.5 35.2 376 100-493 91-475 (519)
3 KOG0338 ATP-dependent RNA heli 100.0 1.8E-73 4E-78 528.0 22.9 359 99-477 180-544 (691)
4 KOG0328 Predicted ATP-dependen 100.0 6.6E-72 1.4E-76 481.3 28.0 374 96-489 23-396 (400)
5 KOG0332 ATP-dependent RNA heli 100.0 7.5E-72 1.6E-76 498.9 28.7 401 83-497 74-476 (477)
6 COG0513 SrmB Superfamily II DN 100.0 1.6E-69 3.4E-74 543.8 35.8 365 100-483 29-398 (513)
7 KOG0333 U5 snRNP-like RNA heli 100.0 1.8E-68 3.8E-73 496.7 31.3 385 88-489 233-648 (673)
8 KOG0340 ATP-dependent RNA heli 100.0 4.5E-68 9.7E-73 471.9 26.2 376 99-493 6-388 (442)
9 KOG0343 RNA Helicase [RNA proc 100.0 3.5E-68 7.6E-73 497.2 26.8 366 99-486 68-442 (758)
10 KOG0326 ATP-dependent RNA heli 100.0 1.1E-67 2.4E-72 462.7 25.7 372 97-490 82-453 (459)
11 KOG0342 ATP-dependent RNA heli 100.0 2.8E-66 6.2E-71 479.7 29.5 383 96-498 78-469 (543)
12 KOG0347 RNA helicase [RNA proc 100.0 5E-67 1.1E-71 489.4 23.1 370 94-481 175-585 (731)
13 PTZ00110 helicase; Provisional 100.0 1.4E-65 3.1E-70 520.4 35.7 385 91-494 121-512 (545)
14 KOG0336 ATP-dependent RNA heli 100.0 2.4E-66 5.2E-71 468.5 26.3 379 98-497 217-603 (629)
15 PRK04837 ATP-dependent RNA hel 100.0 2.5E-64 5.4E-69 501.7 37.6 376 99-493 7-389 (423)
16 KOG0345 ATP-dependent RNA heli 100.0 1.5E-64 3.3E-69 465.0 30.8 349 99-466 3-365 (567)
17 KOG0339 ATP-dependent RNA heli 100.0 4.6E-64 1E-68 465.0 32.0 384 91-493 214-602 (731)
18 PLN00206 DEAD-box ATP-dependen 100.0 1.1E-63 2.3E-68 505.6 37.2 382 91-492 112-501 (518)
19 KOG0348 ATP-dependent RNA heli 100.0 6.7E-64 1.5E-68 467.0 29.7 371 95-479 131-567 (708)
20 KOG0335 ATP-dependent RNA heli 100.0 8.6E-64 1.9E-68 471.6 28.4 388 89-491 63-469 (482)
21 PRK11776 ATP-dependent RNA hel 100.0 1.4E-62 3.1E-67 494.4 37.9 365 99-485 3-368 (460)
22 PRK11634 ATP-dependent RNA hel 100.0 1.8E-62 3.9E-67 501.5 38.6 367 99-486 5-372 (629)
23 KOG0341 DEAD-box protein abstr 100.0 2.5E-65 5.5E-70 458.9 15.0 383 89-492 159-555 (610)
24 PRK10590 ATP-dependent RNA hel 100.0 3.3E-62 7.1E-67 489.3 37.1 364 101-485 2-371 (456)
25 PRK04537 ATP-dependent RNA hel 100.0 7.3E-62 1.6E-66 494.7 37.9 368 100-486 9-384 (572)
26 PRK11192 ATP-dependent RNA hel 100.0 4.7E-61 1E-65 480.6 37.8 364 101-484 2-370 (434)
27 KOG0346 RNA helicase [RNA proc 100.0 1.7E-61 3.6E-66 441.1 25.2 361 100-478 19-422 (569)
28 PRK01297 ATP-dependent RNA hel 100.0 2.1E-59 4.5E-64 472.4 42.6 369 97-483 84-459 (475)
29 KOG0327 Translation initiation 100.0 1.8E-60 4E-65 429.8 25.6 371 99-491 25-395 (397)
30 PTZ00424 helicase 45; Provisio 100.0 6.5E-59 1.4E-63 462.3 37.4 369 99-487 27-395 (401)
31 KOG0334 RNA helicase [RNA proc 100.0 4.8E-59 1E-63 469.4 26.2 384 92-494 357-748 (997)
32 KOG0350 DEAD-box ATP-dependent 100.0 1.3E-57 2.9E-62 421.9 25.4 373 101-486 128-564 (620)
33 KOG0344 ATP-dependent RNA heli 100.0 1.3E-56 2.9E-61 425.3 26.6 382 88-486 120-515 (593)
34 KOG4284 DEAD box protein [Tran 100.0 1.2E-56 2.6E-61 426.6 23.4 353 97-468 22-382 (980)
35 KOG0337 ATP-dependent RNA heli 100.0 5.7E-56 1.2E-60 403.0 20.0 367 99-485 20-387 (529)
36 TIGR03817 DECH_helic helicase/ 100.0 8.4E-54 1.8E-58 446.2 35.8 355 106-485 20-407 (742)
37 PLN03137 ATP-dependent DNA hel 100.0 1.1E-50 2.4E-55 419.4 31.3 338 104-466 441-788 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.8E-50 3.9E-55 405.7 29.4 325 115-466 3-334 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 6.9E-49 1.5E-53 404.0 30.8 333 107-466 9-344 (607)
40 PRK02362 ski2-like helicase; P 100.0 9.8E-48 2.1E-52 405.6 33.5 360 101-485 2-415 (737)
41 KOG0329 ATP-dependent RNA heli 100.0 5.6E-49 1.2E-53 334.7 14.7 337 98-488 40-378 (387)
42 PRK13767 ATP-dependent helicas 100.0 5.3E-47 1.1E-51 403.2 32.9 364 107-485 18-419 (876)
43 TIGR01389 recQ ATP-dependent D 100.0 3.8E-47 8.2E-52 392.8 30.0 325 114-465 4-331 (591)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.2E-46 9.2E-51 380.3 32.2 318 118-463 11-389 (844)
45 PRK00254 ski2-like helicase; P 100.0 1.1E-45 2.3E-50 389.2 32.9 340 101-465 2-388 (720)
46 TIGR00580 mfd transcription-re 100.0 5.3E-46 1.1E-50 390.9 30.4 329 105-465 434-770 (926)
47 PRK01172 ski2-like helicase; P 100.0 5.4E-45 1.2E-49 382.4 31.3 357 101-478 2-388 (674)
48 PRK10689 transcription-repair 100.0 2E-44 4.3E-49 387.0 31.3 361 106-501 584-952 (1147)
49 PRK09401 reverse gyrase; Revie 100.0 3.1E-44 6.6E-49 386.4 31.5 293 115-429 73-410 (1176)
50 PRK10917 ATP-dependent DNA hel 100.0 5.1E-43 1.1E-47 364.3 32.7 326 109-465 248-589 (681)
51 COG1201 Lhr Lhr-like helicases 100.0 5.4E-43 1.2E-47 355.6 30.0 358 107-485 8-383 (814)
52 TIGR00643 recG ATP-dependent D 100.0 1.3E-42 2.8E-47 359.2 32.5 327 109-463 222-564 (630)
53 PHA02653 RNA helicase NPH-II; 100.0 1.2E-42 2.7E-47 353.5 30.8 317 126-466 167-515 (675)
54 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.1E-42 2E-46 355.4 33.5 332 141-501 18-366 (819)
55 COG0514 RecQ Superfamily II DN 100.0 1.2E-42 2.7E-47 340.7 25.2 330 113-468 7-340 (590)
56 PRK11664 ATP-dependent RNA hel 100.0 4E-41 8.7E-46 351.6 32.5 333 141-501 21-369 (812)
57 PRK14701 reverse gyrase; Provi 100.0 2.2E-41 4.8E-46 371.4 31.1 365 110-499 67-559 (1638)
58 PRK09751 putative ATP-dependen 100.0 2.6E-41 5.6E-46 364.5 30.8 327 145-486 1-407 (1490)
59 TIGR01054 rgy reverse gyrase. 100.0 3E-41 6.5E-46 363.9 29.8 296 112-429 68-409 (1171)
60 KOG0349 Putative DEAD-box RNA 100.0 1.1E-41 2.3E-46 310.8 19.8 283 171-464 286-614 (725)
61 COG1202 Superfamily II helicas 100.0 5.5E-39 1.2E-43 303.0 28.1 348 99-466 193-554 (830)
62 PRK12898 secA preprotein trans 100.0 3.2E-39 7E-44 323.1 28.2 328 115-467 96-588 (656)
63 TIGR01587 cas3_core CRISPR-ass 100.0 4.2E-40 9.2E-45 321.9 21.1 303 142-465 1-336 (358)
64 PHA02558 uvsW UvsW helicase; P 100.0 5.4E-39 1.2E-43 324.2 27.7 309 121-462 112-449 (501)
65 COG1111 MPH1 ERCC4-like helica 100.0 1.4E-38 3.1E-43 298.1 25.3 325 120-465 12-481 (542)
66 PRK09200 preprotein translocas 100.0 2.9E-38 6.3E-43 323.0 27.6 330 114-467 70-543 (790)
67 TIGR00963 secA preprotein tran 100.0 3E-37 6.5E-42 310.4 29.0 329 114-468 48-520 (745)
68 TIGR03714 secA2 accessory Sec 100.0 2.5E-37 5.3E-42 313.1 28.4 329 117-467 65-539 (762)
69 COG1204 Superfamily II helicas 100.0 1.8E-37 3.9E-42 320.0 27.7 346 107-468 16-411 (766)
70 PRK11131 ATP-dependent RNA hel 100.0 1.4E-36 2.9E-41 322.5 31.9 327 141-501 90-441 (1294)
71 KOG0352 ATP-dependent DNA heli 100.0 8.7E-38 1.9E-42 284.9 18.4 336 110-472 6-368 (641)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 5.8E-36 1.3E-40 289.1 26.0 301 127-450 1-357 (357)
73 PRK13766 Hef nuclease; Provisi 100.0 1.9E-35 4.2E-40 316.3 28.7 326 120-466 12-480 (773)
74 KOG0351 ATP-dependent DNA heli 100.0 8.9E-36 1.9E-40 309.3 23.5 334 109-466 250-593 (941)
75 COG1205 Distinct helicase fami 100.0 3.6E-35 7.8E-40 307.3 25.7 355 109-479 57-437 (851)
76 KOG0354 DEAD-box like helicase 100.0 1.2E-34 2.7E-39 287.6 27.2 324 120-464 59-528 (746)
77 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.3E-34 1.6E-38 302.9 30.9 331 141-501 83-434 (1283)
78 KOG0952 DNA/RNA helicase MER3/ 100.0 2.3E-34 5E-39 288.9 23.9 334 118-463 105-489 (1230)
79 KOG0353 ATP-dependent DNA heli 100.0 1.3E-34 2.7E-39 260.7 19.4 341 102-465 73-467 (695)
80 TIGR00603 rad25 DNA repair hel 100.0 1.8E-33 3.9E-38 285.2 29.2 309 123-466 255-608 (732)
81 PRK04914 ATP-dependent helicas 100.0 4.7E-32 1E-36 284.4 30.6 340 123-481 152-618 (956)
82 PRK05580 primosome assembly pr 100.0 3.1E-31 6.7E-36 275.0 27.7 328 123-466 144-550 (679)
83 KOG0948 Nuclear exosomal RNA h 100.0 5.4E-32 1.2E-36 262.7 19.3 327 119-472 126-546 (1041)
84 COG1197 Mfd Transcription-repa 100.0 8.4E-31 1.8E-35 270.6 26.9 362 105-501 577-946 (1139)
85 PRK09694 helicase Cas3; Provis 100.0 1.2E-30 2.6E-35 272.2 26.7 318 119-454 282-664 (878)
86 COG1200 RecG RecG-like helicas 100.0 3.4E-30 7.3E-35 252.4 26.8 332 104-466 244-592 (677)
87 PRK13104 secA preprotein trans 100.0 8.3E-30 1.8E-34 260.3 27.1 327 119-467 79-589 (896)
88 KOG0947 Cytoplasmic exosomal R 100.0 9.1E-30 2E-34 253.2 26.2 323 118-465 293-723 (1248)
89 KOG0951 RNA helicase BRR2, DEA 100.0 2.4E-30 5.2E-35 263.4 22.0 357 107-481 296-718 (1674)
90 COG1061 SSL2 DNA or RNA helica 100.0 8.1E-30 1.7E-34 252.3 24.9 293 123-451 36-375 (442)
91 cd00268 DEADc DEAD-box helicas 100.0 2.7E-30 5.8E-35 232.0 19.1 200 102-310 1-202 (203)
92 KOG0922 DEAH-box RNA helicase 100.0 3.4E-29 7.3E-34 242.8 27.9 333 141-501 67-420 (674)
93 TIGR00595 priA primosomal prot 100.0 3.5E-30 7.6E-35 257.8 20.9 308 144-467 1-383 (505)
94 KOG0926 DEAH-box RNA helicase 100.0 5.1E-29 1.1E-33 243.6 26.9 346 133-501 266-735 (1172)
95 PRK12904 preprotein translocas 100.0 1E-28 2.2E-33 252.2 27.8 327 116-468 75-576 (830)
96 PRK12899 secA preprotein trans 100.0 1.6E-28 3.5E-33 250.3 27.1 151 102-261 64-229 (970)
97 PRK12906 secA preprotein trans 100.0 8.1E-29 1.8E-33 251.9 24.2 330 114-468 72-556 (796)
98 COG1643 HrpA HrpA-like helicas 100.0 4.9E-28 1.1E-32 248.8 29.5 333 141-501 66-417 (845)
99 KOG0923 mRNA splicing factor A 100.0 6.9E-28 1.5E-32 231.5 23.1 343 130-501 272-637 (902)
100 COG4581 Superfamily II RNA hel 100.0 6.9E-27 1.5E-31 241.7 26.7 325 118-465 115-537 (1041)
101 PRK11448 hsdR type I restricti 100.0 3.8E-27 8.3E-32 253.1 23.6 306 123-453 413-801 (1123)
102 PRK13107 preprotein translocas 100.0 9.1E-27 2E-31 237.4 24.8 328 118-467 78-593 (908)
103 COG4098 comFA Superfamily II D 100.0 5.2E-26 1.1E-30 203.1 26.1 312 123-470 97-420 (441)
104 KOG0924 mRNA splicing factor A 99.9 2.6E-26 5.7E-31 221.2 22.9 334 141-501 372-728 (1042)
105 KOG0950 DNA polymerase theta/e 99.9 2.6E-26 5.6E-31 230.3 21.5 346 106-469 206-615 (1008)
106 PLN03142 Probable chromatin-re 99.9 9.2E-26 2E-30 237.9 23.1 322 123-465 169-599 (1033)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 1.2E-26 2.5E-31 202.2 12.9 168 125-298 1-168 (169)
108 COG1203 CRISPR-associated heli 99.9 2.7E-25 5.9E-30 233.0 23.9 328 123-464 195-549 (733)
109 COG1110 Reverse gyrase [DNA re 99.9 1.2E-24 2.6E-29 219.5 24.9 288 117-428 77-416 (1187)
110 KOG0920 ATP-dependent RNA heli 99.9 2.3E-24 5E-29 220.8 22.9 322 126-465 176-544 (924)
111 TIGR01407 dinG_rel DnaQ family 99.9 4.4E-23 9.6E-28 221.0 31.5 380 108-497 232-847 (850)
112 TIGR00631 uvrb excinuclease AB 99.9 2.9E-22 6.3E-27 205.6 28.3 124 333-465 425-553 (655)
113 KOG0385 Chromatin remodeling c 99.9 3.8E-23 8.3E-28 202.3 19.8 318 123-465 167-599 (971)
114 KOG0925 mRNA splicing factor A 99.9 4.6E-22 1E-26 185.4 23.8 363 99-501 24-418 (699)
115 PRK12900 secA preprotein trans 99.9 7.7E-23 1.7E-27 209.7 19.5 127 331-467 579-713 (1025)
116 KOG0387 Transcription-coupled 99.9 1.3E-21 2.8E-26 192.6 25.6 323 123-466 205-659 (923)
117 PRK05298 excinuclease ABC subu 99.9 1.8E-21 3.9E-26 201.4 28.1 149 334-486 430-586 (652)
118 TIGR00348 hsdR type I site-spe 99.9 3.1E-21 6.6E-26 200.5 23.2 302 124-452 239-634 (667)
119 PRK07246 bifunctional ATP-depe 99.9 2.3E-20 5E-25 197.2 29.3 365 120-497 243-816 (820)
120 COG0556 UvrB Helicase subunit 99.9 2.8E-20 6E-25 176.0 22.8 170 282-463 386-555 (663)
121 COG1198 PriA Primosomal protei 99.9 5.9E-21 1.3E-25 194.0 19.3 330 123-466 198-604 (730)
122 COG4096 HsdR Type I site-speci 99.9 4.5E-21 9.7E-26 191.1 17.4 296 121-452 163-525 (875)
123 PRK12326 preprotein translocas 99.9 6.6E-20 1.4E-24 183.2 23.8 326 116-467 72-549 (764)
124 KOG0949 Predicted helicase, DE 99.9 1.6E-20 3.4E-25 188.3 17.4 158 123-293 511-672 (1330)
125 KOG0384 Chromodomain-helicase 99.8 3.7E-21 7.9E-26 197.4 10.1 323 122-466 369-812 (1373)
126 KOG0390 DNA repair protein, SN 99.8 3.7E-19 8.1E-24 179.8 22.7 320 123-464 238-706 (776)
127 KOG1123 RNA polymerase II tran 99.8 4.7E-20 1E-24 172.6 14.7 310 120-463 299-651 (776)
128 PRK13103 secA preprotein trans 99.8 6.2E-19 1.3E-23 180.6 22.6 325 118-468 78-594 (913)
129 PRK08074 bifunctional ATP-depe 99.8 3.4E-18 7.3E-23 184.2 28.9 160 337-497 738-925 (928)
130 KOG0389 SNF2 family DNA-depend 99.8 2.1E-19 4.5E-24 177.0 16.5 324 124-466 400-889 (941)
131 KOG4150 Predicted ATP-dependen 99.8 4.7E-19 1E-23 168.3 15.6 362 110-486 273-662 (1034)
132 PRK12903 secA preprotein trans 99.8 8.6E-18 1.9E-22 170.5 24.3 326 116-467 72-541 (925)
133 smart00487 DEXDc DEAD-like hel 99.8 2.2E-18 4.8E-23 154.2 17.1 186 119-311 4-189 (201)
134 KOG1000 Chromatin remodeling p 99.8 1.7E-17 3.7E-22 155.5 22.7 329 123-478 198-617 (689)
135 TIGR03117 cas_csf4 CRISPR-asso 99.8 3.7E-17 7.9E-22 165.3 26.8 115 349-465 469-616 (636)
136 cd00079 HELICc Helicase superf 99.8 2.2E-18 4.8E-23 143.1 14.5 120 334-461 12-131 (131)
137 CHL00122 secA preprotein trans 99.8 2.9E-17 6.4E-22 167.7 24.7 288 114-417 68-491 (870)
138 KOG0392 SNF2 family DNA-depend 99.8 1.1E-17 2.4E-22 171.6 21.5 332 124-477 976-1466(1549)
139 COG4889 Predicted helicase [Ge 99.8 7E-19 1.5E-23 174.6 11.4 328 120-463 158-586 (1518)
140 PF00271 Helicase_C: Helicase 99.7 3.3E-18 7.2E-23 127.6 7.4 78 368-453 1-78 (78)
141 KOG0953 Mitochondrial RNA heli 99.7 1E-16 2.2E-21 152.6 17.8 293 141-486 192-493 (700)
142 PRK12902 secA preprotein trans 99.7 4.9E-16 1.1E-20 158.5 23.3 285 117-417 80-506 (939)
143 KOG0951 RNA helicase BRR2, DEA 99.7 7E-16 1.5E-20 158.9 21.0 324 123-470 1143-1499(1674)
144 PRK11747 dinG ATP-dependent DN 99.7 7.6E-15 1.6E-19 153.6 28.1 124 336-463 520-672 (697)
145 KOG0391 SNF2 family DNA-depend 99.7 8.2E-16 1.8E-20 156.8 18.8 128 332-465 1258-1387(1958)
146 COG1199 DinG Rad3-related DNA 99.7 9.1E-15 2E-19 154.3 24.2 134 349-485 478-638 (654)
147 cd00046 DEXDc DEAD-like helica 99.7 1.1E-15 2.4E-20 128.5 13.7 144 141-292 1-144 (144)
148 KOG0386 Chromatin remodeling c 99.7 2.3E-16 5E-21 159.5 10.6 322 123-463 394-834 (1157)
149 PF06862 DUF1253: Protein of u 99.7 1.1E-13 2.4E-18 133.3 27.5 302 166-481 32-427 (442)
150 PF04851 ResIII: Type III rest 99.6 1E-15 2.2E-20 135.1 9.6 156 123-293 3-183 (184)
151 smart00490 HELICc helicase sup 99.6 4E-15 8.6E-20 112.3 8.2 81 365-453 2-82 (82)
152 TIGR00604 rad3 DNA repair heli 99.6 5.3E-13 1.2E-17 141.0 26.6 76 119-194 6-83 (705)
153 KOG1002 Nucleotide excision re 99.6 1.7E-12 3.6E-17 122.3 26.2 125 334-466 620-750 (791)
154 KOG0388 SNF2 family DNA-depend 99.6 1.9E-13 4.1E-18 133.7 20.0 124 333-464 1027-1153(1185)
155 KOG1015 Transcription regulato 99.6 1E-13 2.3E-18 139.2 18.1 118 335-460 1127-1270(1567)
156 PRK12901 secA preprotein trans 99.6 9.8E-14 2.1E-18 143.4 17.1 127 331-467 609-743 (1112)
157 TIGR02562 cas3_yersinia CRISPR 99.5 3.1E-13 6.8E-18 140.4 19.6 316 123-454 408-881 (1110)
158 PF02399 Herpes_ori_bp: Origin 99.5 2.7E-12 5.8E-17 130.3 23.7 295 141-463 50-386 (824)
159 PRK14873 primosome assembly pr 99.5 2.9E-13 6.4E-18 139.1 11.2 294 144-462 164-536 (665)
160 KOG4439 RNA polymerase II tran 99.4 3.9E-12 8.4E-17 124.8 17.5 124 334-465 729-858 (901)
161 COG0610 Type I site-specific r 99.4 2.3E-11 5E-16 130.9 23.2 300 139-463 272-651 (962)
162 KOG2340 Uncharacterized conser 99.4 2.1E-11 4.5E-16 116.1 19.9 336 122-466 215-669 (698)
163 COG0553 HepA Superfamily II DN 99.3 2.4E-11 5.2E-16 133.7 18.2 125 334-466 692-823 (866)
164 PF07652 Flavi_DEAD: Flaviviru 99.3 5.7E-12 1.2E-16 101.2 9.0 136 141-296 5-140 (148)
165 KOG0921 Dosage compensation co 99.3 3E-11 6.4E-16 121.5 10.8 310 140-463 393-772 (1282)
166 COG0653 SecA Preprotein transl 99.2 8.8E-11 1.9E-15 120.2 12.2 334 119-466 77-546 (822)
167 PF00176 SNF2_N: SNF2 family N 99.2 2.3E-10 4.9E-15 109.3 12.5 143 140-293 25-173 (299)
168 smart00488 DEXDc2 DEAD-like he 99.1 9.3E-10 2E-14 103.2 10.4 73 119-194 5-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 9.3E-10 2E-14 103.2 10.4 73 119-194 5-84 (289)
170 KOG1016 Predicted DNA helicase 98.8 4.3E-07 9.3E-12 90.8 19.4 105 349-461 718-843 (1387)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 2.6E-08 5.7E-13 90.8 8.4 133 117-261 72-211 (266)
172 KOG0952 DNA/RNA helicase MER3/ 98.7 3E-09 6.5E-14 109.5 1.7 133 123-262 927-1061(1230)
173 COG3587 Restriction endonuclea 98.5 5.4E-06 1.2E-10 84.5 16.1 72 399-478 482-565 (985)
174 PF13307 Helicase_C_2: Helicas 98.5 1.8E-07 3.9E-12 80.4 5.1 111 349-463 8-148 (167)
175 TIGR00596 rad1 DNA repair prot 98.5 4.4E-06 9.5E-11 88.2 15.8 64 224-291 8-71 (814)
176 PF13086 AAA_11: AAA domain; P 98.5 2.6E-07 5.7E-12 84.7 6.0 67 124-193 2-75 (236)
177 PRK15483 type III restriction- 98.4 9.5E-07 2.1E-11 93.3 10.1 71 400-478 501-580 (986)
178 PF13604 AAA_30: AAA domain; P 98.3 1E-06 2.3E-11 77.8 5.9 65 123-190 1-65 (196)
179 KOG1001 Helicase-like transcri 98.3 7E-06 1.5E-10 84.8 11.7 101 351-459 540-642 (674)
180 PF13872 AAA_34: P-loop contai 98.2 3.1E-05 6.7E-10 71.1 13.2 165 124-297 38-225 (303)
181 PF09848 DUF2075: Uncharacteri 98.2 6.9E-06 1.5E-10 79.9 9.4 96 141-261 2-97 (352)
182 PF02562 PhoH: PhoH-like prote 98.1 2.5E-06 5.4E-11 74.7 4.2 59 122-183 3-61 (205)
183 PF12340 DUF3638: Protein of u 98.0 3.3E-05 7.2E-10 68.2 8.5 156 100-261 3-186 (229)
184 PF13245 AAA_19: Part of AAA d 98.0 2E-05 4.3E-10 57.4 6.0 51 141-191 11-62 (76)
185 PRK10875 recD exonuclease V su 98.0 4.4E-05 9.6E-10 78.7 10.5 141 124-291 153-301 (615)
186 TIGR01447 recD exodeoxyribonuc 97.9 3.5E-05 7.6E-10 79.2 9.3 139 125-290 147-294 (586)
187 KOG1802 RNA helicase nonsense 97.9 1.7E-05 3.7E-10 78.6 6.3 73 119-195 406-478 (935)
188 smart00492 HELICc3 helicase su 97.8 9.2E-05 2E-09 61.2 8.4 84 380-463 27-136 (141)
189 TIGR01448 recD_rel helicase, p 97.8 9.8E-05 2.1E-09 78.3 10.8 67 119-189 320-386 (720)
190 smart00491 HELICc2 helicase su 97.8 9.1E-05 2E-09 61.4 7.5 77 387-463 31-137 (142)
191 KOG1803 DNA helicase [Replicat 97.8 4.2E-05 9.2E-10 75.5 6.0 66 123-192 185-250 (649)
192 PRK10536 hypothetical protein; 97.7 0.00014 3.1E-09 65.6 8.4 61 119-182 55-115 (262)
193 COG1875 NYN ribonuclease and A 97.7 5.1E-05 1.1E-09 70.6 5.3 67 118-184 223-289 (436)
194 COG3421 Uncharacterized protei 97.6 0.00046 9.9E-09 68.2 11.1 147 146-294 3-167 (812)
195 KOG1132 Helicase of the DEAD s 97.6 0.00016 3.4E-09 74.5 7.9 113 351-464 562-721 (945)
196 PRK12723 flagellar biosynthesi 97.5 0.0013 2.9E-08 63.9 12.3 120 141-294 175-299 (388)
197 TIGR02768 TraA_Ti Ti-type conj 97.5 0.0012 2.7E-08 70.4 13.0 62 123-188 352-413 (744)
198 PF13401 AAA_22: AAA domain; P 97.4 0.00021 4.7E-09 58.7 5.2 17 141-157 5-21 (131)
199 PF00580 UvrD-helicase: UvrD/R 97.4 0.00024 5.2E-09 68.2 6.2 70 124-197 1-71 (315)
200 PRK13826 Dtr system oriT relax 97.3 0.0033 7.1E-08 68.7 12.8 140 106-291 366-505 (1102)
201 KOG0383 Predicted helicase [Ge 97.3 3.7E-05 7.9E-10 78.7 -1.9 79 334-413 615-696 (696)
202 PRK13889 conjugal transfer rel 97.2 0.0018 3.8E-08 70.3 10.5 125 123-291 346-470 (988)
203 KOG0989 Replication factor C, 97.2 0.0017 3.7E-08 59.3 8.7 52 99-166 32-83 (346)
204 PRK14722 flhF flagellar biosyn 97.2 0.0015 3.3E-08 63.0 9.0 131 140-303 137-269 (374)
205 KOG0298 DEAD box-containing he 97.2 0.0012 2.7E-08 70.7 8.9 148 140-298 374-556 (1394)
206 PF05970 PIF1: PIF1-like helic 97.2 0.0014 3E-08 64.0 8.8 59 124-187 2-66 (364)
207 PRK04296 thymidine kinase; Pro 97.2 0.00082 1.8E-08 59.1 6.0 109 141-291 3-114 (190)
208 PF00308 Bac_DnaA: Bacterial d 97.1 0.00079 1.7E-08 60.6 5.7 111 141-297 35-145 (219)
209 COG1419 FlhF Flagellar GTP-bin 97.1 0.011 2.3E-07 56.9 13.2 131 140-303 203-335 (407)
210 cd00009 AAA The AAA+ (ATPases 97.1 0.0069 1.5E-07 50.4 10.7 16 141-156 20-35 (151)
211 PRK05642 DNA replication initi 97.1 0.0018 4E-08 58.9 7.5 47 245-294 95-141 (234)
212 PRK06893 DNA replication initi 97.1 0.0022 4.9E-08 58.2 7.9 49 245-295 89-137 (229)
213 TIGR02760 TraI_TIGR conjugativ 97.1 0.013 2.8E-07 69.0 15.8 241 123-400 429-686 (1960)
214 PRK06526 transposase; Provisio 97.0 0.0023 5E-08 58.8 7.7 19 141-159 99-117 (254)
215 PF14617 CMS1: U3-containing 9 97.0 0.0007 1.5E-08 61.3 4.0 87 170-258 125-212 (252)
216 PRK08181 transposase; Validate 97.0 0.0042 9.1E-08 57.5 9.3 43 141-187 107-149 (269)
217 PRK14087 dnaA chromosomal repl 97.0 0.0044 9.5E-08 62.2 9.9 112 141-296 142-253 (450)
218 KOG1133 Helicase of the DEAD s 96.9 0.066 1.4E-06 54.5 17.3 127 350-479 629-794 (821)
219 PRK00149 dnaA chromosomal repl 96.9 0.0055 1.2E-07 61.9 9.9 111 141-297 149-259 (450)
220 PF00448 SRP54: SRP54-type pro 96.9 0.0056 1.2E-07 53.9 8.6 132 141-303 2-136 (196)
221 PRK08084 DNA replication initi 96.9 0.0032 7E-08 57.4 7.3 44 248-293 98-141 (235)
222 PRK08727 hypothetical protein; 96.8 0.0052 1.1E-07 56.0 8.4 50 245-296 91-140 (233)
223 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.013 2.7E-07 53.3 10.9 17 141-157 39-55 (226)
224 PRK06835 DNA replication prote 96.8 0.012 2.6E-07 56.2 11.0 43 141-187 184-226 (329)
225 PRK05703 flhF flagellar biosyn 96.8 0.016 3.4E-07 57.6 12.0 129 141-302 222-353 (424)
226 TIGR00376 DNA helicase, putati 96.8 0.0029 6.4E-08 66.2 6.9 67 123-193 157-223 (637)
227 PRK14088 dnaA chromosomal repl 96.8 0.0088 1.9E-07 59.9 10.1 117 141-302 131-247 (440)
228 PRK11889 flhF flagellar biosyn 96.8 0.022 4.9E-07 54.9 12.0 129 141-303 242-374 (436)
229 PRK08116 hypothetical protein; 96.7 0.024 5.2E-07 52.7 12.1 43 141-187 115-157 (268)
230 PRK05580 primosome assembly pr 96.7 0.03 6.5E-07 59.4 14.2 100 326-426 166-266 (679)
231 TIGR00362 DnaA chromosomal rep 96.7 0.0078 1.7E-07 60.0 9.4 37 141-178 137-173 (405)
232 PRK06921 hypothetical protein; 96.7 0.013 2.9E-07 54.3 10.0 43 141-186 118-160 (266)
233 PRK14086 dnaA chromosomal repl 96.7 0.0075 1.6E-07 61.8 8.8 111 141-297 315-425 (617)
234 smart00382 AAA ATPases associa 96.7 0.0022 4.8E-08 53.1 4.3 40 141-183 3-42 (148)
235 PRK10919 ATP-dependent DNA hel 96.6 0.0062 1.3E-07 64.6 8.1 70 123-196 2-72 (672)
236 TIGR01075 uvrD DNA helicase II 96.6 0.0039 8.4E-08 66.9 6.6 69 123-195 4-73 (715)
237 PRK12377 putative replication 96.6 0.031 6.8E-07 51.0 11.5 45 141-189 102-146 (248)
238 KOG1805 DNA replication helica 96.6 0.0069 1.5E-07 63.6 7.9 140 104-261 655-810 (1100)
239 TIGR02881 spore_V_K stage V sp 96.6 0.013 2.8E-07 54.5 9.3 17 141-157 43-59 (261)
240 PTZ00112 origin recognition co 96.6 0.024 5.1E-07 59.9 11.7 28 246-275 868-895 (1164)
241 PRK14974 cell division protein 96.6 0.015 3.3E-07 55.6 9.8 131 141-303 141-275 (336)
242 PRK14956 DNA polymerase III su 96.6 0.017 3.8E-07 57.4 10.4 21 141-161 41-61 (484)
243 PRK14712 conjugal transfer nic 96.5 0.011 2.3E-07 67.1 9.2 65 123-188 835-901 (1623)
244 PRK11773 uvrD DNA-dependent he 96.5 0.0045 9.7E-08 66.4 6.1 69 123-195 9-78 (721)
245 PRK07764 DNA polymerase III su 96.5 0.02 4.4E-07 61.4 10.9 40 245-289 118-157 (824)
246 PRK00411 cdc6 cell division co 96.5 0.022 4.7E-07 56.7 10.6 37 140-177 55-91 (394)
247 PRK13709 conjugal transfer nic 96.5 0.014 3.1E-07 67.0 10.1 65 123-188 967-1033(1747)
248 PRK14964 DNA polymerase III su 96.4 0.037 8.1E-07 55.7 11.9 41 245-291 114-154 (491)
249 PRK12422 chromosomal replicati 96.4 0.017 3.7E-07 57.8 9.5 115 141-303 142-256 (445)
250 PRK07003 DNA polymerase III su 96.4 0.028 6E-07 58.7 10.9 45 99-159 12-57 (830)
251 PRK14723 flhF flagellar biosyn 96.4 0.028 6.1E-07 59.2 11.0 128 141-303 186-317 (767)
252 KOG1131 RNA polymerase II tran 96.4 0.01 2.3E-07 57.9 7.1 79 352-430 532-624 (755)
253 COG1444 Predicted P-loop ATPas 96.4 0.015 3.3E-07 60.5 8.8 148 119-293 210-357 (758)
254 PRK08903 DnaA regulatory inact 96.4 0.06 1.3E-06 48.9 12.0 16 141-156 43-58 (227)
255 COG1474 CDC6 Cdc6-related prot 96.3 0.035 7.6E-07 53.9 10.8 35 133-168 35-69 (366)
256 PRK05707 DNA polymerase III su 96.3 0.022 4.8E-07 54.6 9.2 38 124-161 4-43 (328)
257 TIGR01074 rep ATP-dependent DN 96.3 0.013 2.8E-07 62.6 8.5 69 124-196 2-71 (664)
258 PF03354 Terminase_1: Phage Te 96.3 0.044 9.5E-07 55.8 11.8 72 126-197 1-80 (477)
259 PRK10917 ATP-dependent DNA hel 96.3 0.033 7E-07 59.3 11.2 99 326-424 286-389 (681)
260 PF13871 Helicase_C_4: Helicas 96.3 0.018 3.9E-07 52.9 7.9 80 391-478 52-142 (278)
261 PRK08769 DNA polymerase III su 96.3 0.05 1.1E-06 51.7 11.1 144 122-291 3-152 (319)
262 PRK11054 helD DNA helicase IV; 96.2 0.016 3.6E-07 61.1 8.5 70 122-195 195-265 (684)
263 PF05127 Helicase_RecD: Helica 96.2 0.0033 7.1E-08 53.8 2.6 124 144-293 1-124 (177)
264 PRK12727 flagellar biosynthesi 96.2 0.094 2E-06 52.8 13.1 128 140-302 350-480 (559)
265 cd01120 RecA-like_NTPases RecA 96.2 0.061 1.3E-06 45.7 10.7 38 143-183 2-39 (165)
266 PLN03025 replication factor C 96.2 0.049 1.1E-06 52.3 11.0 44 99-158 9-52 (319)
267 TIGR00595 priA primosomal prot 96.2 0.033 7.2E-07 56.8 10.2 94 332-426 7-101 (505)
268 PRK12323 DNA polymerase III su 96.2 0.044 9.5E-07 56.4 10.8 41 245-290 122-162 (700)
269 PF05876 Terminase_GpA: Phage 96.2 0.02 4.3E-07 59.1 8.6 129 123-261 16-148 (557)
270 KOG0733 Nuclear AAA ATPase (VC 96.2 0.015 3.3E-07 58.2 7.3 147 97-296 505-659 (802)
271 PRK09111 DNA polymerase III su 96.2 0.066 1.4E-06 55.6 12.3 40 245-289 130-169 (598)
272 COG0593 DnaA ATPase involved i 96.2 0.029 6.3E-07 54.6 9.1 51 247-299 175-225 (408)
273 TIGR02880 cbbX_cfxQ probable R 96.1 0.069 1.5E-06 50.2 11.4 17 141-157 59-75 (284)
274 PRK07952 DNA replication prote 96.1 0.097 2.1E-06 47.7 11.8 41 141-185 100-140 (244)
275 PRK14873 primosome assembly pr 96.1 0.071 1.5E-06 56.0 12.3 93 333-426 171-265 (665)
276 PRK14721 flhF flagellar biosyn 96.1 0.049 1.1E-06 53.7 10.4 122 141-295 192-314 (420)
277 PF01695 IstB_IS21: IstB-like 96.1 0.014 3E-07 50.6 6.0 42 141-186 48-89 (178)
278 TIGR01547 phage_term_2 phage t 96.1 0.064 1.4E-06 53.3 11.4 149 141-304 2-152 (396)
279 PRK14952 DNA polymerase III su 96.0 0.078 1.7E-06 54.8 11.9 40 245-289 116-155 (584)
280 PRK14949 DNA polymerase III su 96.0 0.075 1.6E-06 56.7 11.8 42 246-293 118-159 (944)
281 CHL00181 cbbX CbbX; Provisiona 96.0 0.083 1.8E-06 49.7 11.0 19 141-159 60-78 (287)
282 PRK14958 DNA polymerase III su 96.0 0.059 1.3E-06 54.9 10.7 39 246-289 118-156 (509)
283 PRK06731 flhF flagellar biosyn 95.9 0.067 1.5E-06 49.5 10.1 129 140-303 75-208 (270)
284 PRK14962 DNA polymerase III su 95.9 0.068 1.5E-06 53.9 10.8 19 141-159 37-55 (472)
285 PRK14963 DNA polymerase III su 95.9 0.072 1.6E-06 54.2 11.0 38 245-287 114-151 (504)
286 TIGR00643 recG ATP-dependent D 95.9 0.06 1.3E-06 56.9 10.8 99 326-424 260-363 (630)
287 KOG0701 dsRNA-specific nucleas 95.8 0.0093 2E-07 66.9 4.6 93 353-453 295-399 (1606)
288 KOG0738 AAA+-type ATPase [Post 95.8 0.077 1.7E-06 50.4 9.8 18 139-156 244-261 (491)
289 COG3973 Superfamily I DNA and 95.8 0.042 9.1E-07 55.1 8.4 93 104-196 186-285 (747)
290 PHA02533 17 large terminase pr 95.8 0.16 3.4E-06 52.1 12.9 72 123-197 59-130 (534)
291 PRK08451 DNA polymerase III su 95.8 0.086 1.9E-06 53.7 10.9 40 245-289 115-154 (535)
292 PRK14961 DNA polymerase III su 95.7 0.084 1.8E-06 51.7 10.4 40 245-289 117-156 (363)
293 PHA02544 44 clamp loader, smal 95.7 0.092 2E-06 50.4 10.6 43 98-156 16-59 (316)
294 PRK14965 DNA polymerase III su 95.7 0.096 2.1E-06 54.5 11.3 40 245-289 117-156 (576)
295 PRK14960 DNA polymerase III su 95.7 0.078 1.7E-06 54.8 10.3 21 141-161 38-58 (702)
296 PRK13833 conjugal transfer pro 95.7 0.014 3.1E-07 55.4 4.8 58 124-183 129-186 (323)
297 PF13177 DNA_pol3_delta2: DNA 95.7 0.061 1.3E-06 45.8 8.3 42 246-292 101-142 (162)
298 PRK06645 DNA polymerase III su 95.7 0.069 1.5E-06 54.2 9.9 48 98-161 16-64 (507)
299 TIGR02928 orc1/cdc6 family rep 95.7 0.049 1.1E-06 53.5 8.8 25 140-165 40-64 (365)
300 COG1484 DnaC DNA replication p 95.7 0.037 8E-07 51.0 7.4 48 141-192 106-153 (254)
301 PRK14951 DNA polymerase III su 95.7 0.081 1.8E-06 54.9 10.5 40 245-289 122-161 (618)
302 KOG0991 Replication factor C, 95.7 0.027 5.8E-07 49.5 5.9 23 137-159 45-67 (333)
303 PRK05563 DNA polymerase III su 95.7 0.11 2.3E-06 53.9 11.4 47 99-161 12-59 (559)
304 COG2805 PilT Tfp pilus assembl 95.7 0.021 4.5E-07 52.4 5.3 51 96-168 102-152 (353)
305 TIGR02760 TraI_TIGR conjugativ 95.6 0.047 1E-06 64.5 9.6 64 123-188 1019-1085(1960)
306 PRK14959 DNA polymerase III su 95.6 0.12 2.6E-06 53.4 11.4 21 141-161 39-59 (624)
307 PRK12724 flagellar biosynthesi 95.6 0.1 2.3E-06 51.0 10.3 128 141-301 224-354 (432)
308 PRK07994 DNA polymerase III su 95.6 0.078 1.7E-06 55.2 10.1 38 246-288 118-155 (647)
309 PRK13894 conjugal transfer ATP 95.6 0.015 3.3E-07 55.3 4.5 58 124-183 133-190 (319)
310 TIGR03689 pup_AAA proteasome A 95.6 0.058 1.3E-06 54.5 8.7 54 98-156 177-232 (512)
311 PF00004 AAA: ATPase family as 95.5 0.17 3.7E-06 41.1 10.2 16 247-262 58-73 (132)
312 PRK12726 flagellar biosynthesi 95.5 0.091 2E-06 50.6 9.4 120 140-293 206-328 (407)
313 PRK08691 DNA polymerase III su 95.5 0.1 2.3E-06 54.3 10.5 46 99-160 12-58 (709)
314 COG0470 HolB ATPase involved i 95.5 0.12 2.6E-06 49.8 10.7 39 246-289 108-146 (325)
315 TIGR02782 TrbB_P P-type conjug 95.5 0.024 5.2E-07 53.6 5.6 58 124-183 117-174 (299)
316 TIGR00580 mfd transcription-re 95.5 0.1 2.2E-06 57.0 10.9 99 326-424 476-579 (926)
317 COG1110 Reverse gyrase [DNA re 95.5 0.069 1.5E-06 56.9 8.9 62 349-410 124-191 (1187)
318 TIGR01073 pcrA ATP-dependent D 95.4 0.045 9.8E-07 58.9 8.0 70 123-196 4-74 (726)
319 PRK05896 DNA polymerase III su 95.4 0.17 3.6E-06 52.1 11.5 47 99-161 12-59 (605)
320 PRK00440 rfc replication facto 95.4 0.3 6.5E-06 46.9 13.0 17 141-157 39-55 (319)
321 TIGR02525 plasmid_TraJ plasmid 95.4 0.03 6.5E-07 54.4 5.9 42 141-183 150-191 (372)
322 cd01124 KaiC KaiC is a circadi 95.4 0.05 1.1E-06 47.6 6.8 48 143-194 2-49 (187)
323 COG4962 CpaF Flp pilus assembl 95.3 0.05 1.1E-06 51.1 6.8 61 119-184 153-213 (355)
324 TIGR03499 FlhF flagellar biosy 95.3 0.057 1.2E-06 50.7 7.4 18 141-158 195-212 (282)
325 PRK14955 DNA polymerase III su 95.3 0.21 4.5E-06 49.5 11.7 41 245-291 125-165 (397)
326 PRK00771 signal recognition pa 95.3 0.091 2E-06 52.2 8.9 130 141-303 96-228 (437)
327 TIGR03015 pepcterm_ATPase puta 95.2 0.061 1.3E-06 50.3 7.3 41 124-165 24-67 (269)
328 PRK14969 DNA polymerase III su 95.2 0.16 3.5E-06 52.1 10.9 40 245-289 117-156 (527)
329 PHA03368 DNA packaging termina 95.2 0.33 7.2E-06 50.0 12.7 132 141-291 255-389 (738)
330 PRK14948 DNA polymerase III su 95.2 0.16 3.4E-06 53.2 10.6 47 99-161 12-59 (620)
331 TIGR02785 addA_Gpos recombinat 95.1 0.04 8.6E-07 62.7 6.7 123 124-258 2-126 (1232)
332 PRK12402 replication factor C 95.1 0.17 3.7E-06 49.0 10.4 17 142-158 38-54 (337)
333 PRK04195 replication factor C 95.1 0.18 3.8E-06 51.5 10.8 47 98-157 9-56 (482)
334 COG2804 PulE Type II secretory 95.1 0.026 5.5E-07 55.8 4.4 43 125-168 243-285 (500)
335 PRK07993 DNA polymerase III su 95.1 0.13 2.8E-06 49.4 9.2 140 124-291 3-147 (334)
336 PRK06871 DNA polymerase III su 95.1 0.21 4.6E-06 47.6 10.4 42 245-291 105-146 (325)
337 PF13173 AAA_14: AAA domain 95.0 0.17 3.8E-06 41.1 8.6 16 141-156 3-18 (128)
338 KOG0733 Nuclear AAA ATPase (VC 95.0 0.14 3.1E-06 51.6 9.2 61 91-156 178-239 (802)
339 COG1198 PriA Primosomal protei 95.0 0.083 1.8E-06 55.5 8.0 99 325-424 220-319 (730)
340 PRK07471 DNA polymerase III su 95.0 0.24 5.3E-06 48.2 10.7 42 245-291 139-180 (365)
341 TIGR02524 dot_icm_DotB Dot/Icm 95.0 0.047 1E-06 52.9 5.8 25 141-166 135-159 (358)
342 PRK14957 DNA polymerase III su 95.0 0.2 4.2E-06 51.4 10.4 40 245-289 117-156 (546)
343 PRK11331 5-methylcytosine-spec 94.9 0.098 2.1E-06 51.6 7.8 31 125-157 181-211 (459)
344 PRK09183 transposase/IS protei 94.9 0.17 3.8E-06 46.8 9.2 42 141-186 103-144 (259)
345 PF05621 TniB: Bacterial TniB 94.9 0.14 3.1E-06 47.5 8.4 51 141-191 62-116 (302)
346 KOG0734 AAA+-type ATPase conta 94.8 0.16 3.4E-06 50.4 8.7 57 233-291 384-446 (752)
347 PRK06964 DNA polymerase III su 94.8 0.26 5.6E-06 47.4 10.2 37 125-161 3-42 (342)
348 COG2256 MGS1 ATPase related to 94.7 0.14 3.1E-06 49.0 8.1 19 140-158 48-66 (436)
349 PRK07133 DNA polymerase III su 94.7 0.18 3.9E-06 53.1 9.6 41 245-291 116-156 (725)
350 TIGR00678 holB DNA polymerase 94.7 0.16 3.4E-06 44.6 8.1 39 245-288 94-132 (188)
351 PF05729 NACHT: NACHT domain 94.7 0.15 3.3E-06 43.3 7.9 24 141-165 1-24 (166)
352 PRK06995 flhF flagellar biosyn 94.7 0.26 5.7E-06 49.5 10.2 19 141-159 257-275 (484)
353 PHA03333 putative ATPase subun 94.6 0.51 1.1E-05 48.9 12.2 74 123-198 169-243 (752)
354 PRK07940 DNA polymerase III su 94.6 0.36 7.8E-06 47.5 10.9 44 245-294 115-158 (394)
355 TIGR01243 CDC48 AAA family ATP 94.6 0.24 5.3E-06 53.4 10.7 54 99-157 449-504 (733)
356 PRK10689 transcription-repair 94.6 0.25 5.3E-06 55.5 10.9 99 326-424 625-728 (1147)
357 PRK06090 DNA polymerase III su 94.6 0.27 5.8E-06 46.8 9.7 42 245-291 106-147 (319)
358 PF06745 KaiC: KaiC; InterPro 94.6 0.1 2.2E-06 47.3 6.7 53 140-195 19-71 (226)
359 PHA00729 NTP-binding motif con 94.5 0.3 6.5E-06 43.7 9.3 17 141-157 18-34 (226)
360 PF05496 RuvB_N: Holliday junc 94.5 0.035 7.6E-07 49.2 3.4 17 141-157 51-67 (233)
361 PRK10867 signal recognition pa 94.5 0.36 7.8E-06 48.0 10.7 42 141-184 101-144 (433)
362 TIGR01425 SRP54_euk signal rec 94.4 0.28 6.1E-06 48.5 9.6 44 141-187 101-146 (429)
363 PRK14950 DNA polymerase III su 94.4 0.35 7.7E-06 50.5 10.9 41 245-291 118-158 (585)
364 TIGR02397 dnaX_nterm DNA polym 94.4 0.36 7.8E-06 47.2 10.5 38 245-287 115-152 (355)
365 PRK13342 recombination factor 94.4 0.44 9.6E-06 47.6 11.2 17 141-157 37-53 (413)
366 TIGR00064 ftsY signal recognit 94.3 0.71 1.5E-05 43.1 11.7 135 141-303 73-213 (272)
367 PTZ00454 26S protease regulato 94.3 0.39 8.5E-06 47.4 10.4 55 98-157 140-196 (398)
368 PRK13341 recombination factor 94.3 0.3 6.6E-06 52.0 10.2 17 141-157 53-69 (725)
369 KOG0652 26S proteasome regulat 94.2 0.26 5.5E-06 44.3 7.9 106 140-293 205-319 (424)
370 PRK08939 primosomal protein Dn 94.2 0.34 7.3E-06 46.0 9.4 25 141-166 157-181 (306)
371 PRK14970 DNA polymerase III su 94.2 0.44 9.6E-06 46.8 10.7 44 99-158 13-57 (367)
372 COG1435 Tdk Thymidine kinase [ 94.2 0.53 1.1E-05 40.6 9.5 92 141-261 5-96 (201)
373 PRK14954 DNA polymerase III su 94.1 0.25 5.4E-06 51.5 9.1 40 245-289 125-164 (620)
374 PTZ00293 thymidine kinase; Pro 94.1 0.45 9.8E-06 42.0 9.4 38 141-181 5-42 (211)
375 COG3267 ExeA Type II secretory 94.0 0.4 8.6E-06 43.2 8.9 25 141-166 52-76 (269)
376 TIGR02533 type_II_gspE general 94.0 0.098 2.1E-06 53.0 5.8 40 126-166 228-267 (486)
377 PF07728 AAA_5: AAA domain (dy 94.0 0.02 4.4E-07 47.4 0.8 15 142-156 1-15 (139)
378 PRK06647 DNA polymerase III su 94.0 0.42 9E-06 49.5 10.4 41 245-291 117-157 (563)
379 COG3972 Superfamily I DNA and 94.0 0.23 5.1E-06 48.7 7.9 80 110-195 151-230 (660)
380 PHA03372 DNA packaging termina 94.0 0.59 1.3E-05 47.6 10.9 128 141-291 203-336 (668)
381 TIGR00959 ffh signal recogniti 94.0 0.41 8.9E-06 47.5 9.9 21 141-161 100-120 (428)
382 PRK09112 DNA polymerase III su 93.9 0.47 1E-05 46.0 10.1 40 245-289 139-178 (351)
383 PRK03992 proteasome-activating 93.9 0.39 8.4E-06 47.5 9.8 53 99-156 127-181 (389)
384 PRK11823 DNA repair protein Ra 93.8 0.39 8.4E-06 48.3 9.6 51 141-195 81-131 (446)
385 PRK13851 type IV secretion sys 93.8 0.091 2E-06 50.5 4.9 40 141-184 163-202 (344)
386 PRK14953 DNA polymerase III su 93.8 0.8 1.7E-05 46.5 11.7 41 245-291 117-157 (486)
387 KOG2028 ATPase related to the 93.7 1.8 3.9E-05 41.2 12.8 50 140-192 162-211 (554)
388 cd01129 PulE-GspE PulE/GspE Th 93.7 0.12 2.6E-06 47.9 5.4 54 126-182 66-119 (264)
389 PRK10416 signal recognition pa 93.7 0.78 1.7E-05 43.8 10.9 59 245-303 194-255 (318)
390 PRK06305 DNA polymerase III su 93.6 0.81 1.7E-05 46.1 11.3 47 99-161 13-60 (451)
391 PRK08533 flagellar accessory p 93.5 0.83 1.8E-05 41.5 10.3 51 141-195 25-75 (230)
392 PRK07399 DNA polymerase III su 93.5 1 2.2E-05 43.0 11.3 59 225-290 103-161 (314)
393 COG4626 Phage terminase-like p 93.4 0.49 1.1E-05 47.5 9.3 150 124-290 62-223 (546)
394 PRK08699 DNA polymerase III su 93.4 0.52 1.1E-05 45.1 9.3 37 125-161 3-42 (325)
395 TIGR01243 CDC48 AAA family ATP 93.4 0.76 1.7E-05 49.7 11.6 54 98-156 173-228 (733)
396 COG2109 BtuR ATP:corrinoid ade 93.4 1 2.2E-05 38.7 9.7 144 143-302 31-175 (198)
397 TIGR00767 rho transcription te 93.3 0.15 3.2E-06 49.6 5.4 29 139-168 167-195 (415)
398 KOG0745 Putative ATP-dependent 93.3 0.097 2.1E-06 50.5 3.9 16 141-156 227-242 (564)
399 PRK10436 hypothetical protein; 93.1 0.1 2.2E-06 52.4 4.1 40 126-166 204-243 (462)
400 TIGR00602 rad24 checkpoint pro 93.1 1.2 2.7E-05 46.5 12.0 50 97-157 78-127 (637)
401 TIGR02639 ClpA ATP-dependent C 93.1 0.62 1.4E-05 50.2 10.3 21 137-157 200-220 (731)
402 PF00437 T2SE: Type II/IV secr 93.1 0.084 1.8E-06 49.4 3.3 40 141-183 128-167 (270)
403 PRK06067 flagellar accessory p 93.0 0.74 1.6E-05 41.9 9.5 52 140-195 25-76 (234)
404 KOG0741 AAA+-type ATPase [Post 93.0 0.34 7.3E-06 48.1 7.3 58 94-156 210-272 (744)
405 PRK05986 cob(I)alamin adenolsy 93.0 0.46 9.9E-06 41.3 7.4 144 141-301 23-167 (191)
406 TIGR01420 pilT_fam pilus retra 93.0 0.23 4.9E-06 48.2 6.3 41 141-183 123-163 (343)
407 COG2909 MalT ATP-dependent tra 93.0 0.38 8.2E-06 50.7 8.0 44 246-293 128-171 (894)
408 PRK11034 clpA ATP-dependent Cl 92.9 0.35 7.7E-06 51.8 8.0 18 140-157 207-224 (758)
409 PRK14971 DNA polymerase III su 92.9 0.68 1.5E-05 48.5 9.9 41 245-291 119-159 (614)
410 PF03969 AFG1_ATPase: AFG1-lik 92.8 0.62 1.3E-05 45.3 8.9 109 141-296 63-172 (362)
411 PRK14701 reverse gyrase; Provi 92.8 0.58 1.3E-05 54.4 10.0 61 349-409 121-187 (1638)
412 COG0465 HflB ATP-dependent Zn 92.8 0.49 1.1E-05 48.6 8.4 71 225-297 221-301 (596)
413 TIGR01241 FtsH_fam ATP-depende 92.7 0.53 1.1E-05 48.3 8.8 54 98-156 50-104 (495)
414 PF01443 Viral_helicase1: Vira 92.7 0.061 1.3E-06 49.0 1.8 14 143-156 1-14 (234)
415 PF01637 Arch_ATPase: Archaeal 92.6 0.094 2E-06 47.6 3.0 25 140-165 20-44 (234)
416 TIGR03346 chaperone_ClpB ATP-d 92.6 1 2.2E-05 49.5 11.2 21 137-157 191-211 (852)
417 KOG0739 AAA+-type ATPase [Post 92.6 2.3 4.9E-05 39.4 11.4 56 132-194 155-213 (439)
418 PRK13900 type IV secretion sys 92.6 0.13 2.9E-06 49.3 4.0 40 141-184 161-200 (332)
419 COG0513 SrmB Superfamily II DN 92.5 0.71 1.5E-05 47.5 9.4 68 353-424 102-180 (513)
420 KOG1133 Helicase of the DEAD s 92.5 0.11 2.3E-06 53.0 3.3 41 123-165 15-59 (821)
421 cd01126 TraG_VirD4 The TraG/Tr 92.5 0.1 2.2E-06 51.6 3.2 48 142-194 1-48 (384)
422 PF03237 Terminase_6: Terminas 92.4 1.7 3.8E-05 42.5 12.0 42 144-186 1-42 (384)
423 TIGR02538 type_IV_pilB type IV 92.4 0.17 3.7E-06 52.5 4.8 40 126-166 302-341 (564)
424 PF05707 Zot: Zonular occluden 92.4 0.35 7.6E-06 42.6 6.2 55 247-302 79-135 (193)
425 COG1200 RecG RecG-like helicas 92.4 0.93 2E-05 46.7 9.7 82 344-425 305-391 (677)
426 cd01121 Sms Sms (bacterial rad 92.3 0.69 1.5E-05 45.2 8.6 50 141-194 83-132 (372)
427 KOG2228 Origin recognition com 92.3 1.5 3.2E-05 41.4 10.0 60 232-292 122-181 (408)
428 KOG0732 AAA+-type ATPase conta 92.3 0.29 6.3E-06 53.1 6.4 145 99-292 261-414 (1080)
429 COG2255 RuvB Holliday junction 92.3 0.27 6E-06 44.9 5.2 41 230-276 90-130 (332)
430 KOG0730 AAA+-type ATPase [Post 92.2 0.5 1.1E-05 48.3 7.6 56 97-157 428-485 (693)
431 cd01122 GP4d_helicase GP4d_hel 92.2 0.53 1.2E-05 44.0 7.5 48 141-191 31-78 (271)
432 COG1111 MPH1 ERCC4-like helica 92.2 2.4 5.1E-05 42.1 11.8 160 327-497 34-206 (542)
433 COG2874 FlaH Predicted ATPases 92.1 8 0.00017 34.1 13.8 147 141-307 29-185 (235)
434 cd03115 SRP The signal recogni 92.1 1.3 2.9E-05 38.0 9.4 17 143-159 3-19 (173)
435 COG0552 FtsY Signal recognitio 92.0 2.2 4.7E-05 40.3 10.8 135 140-302 139-279 (340)
436 PRK13764 ATPase; Provisional 91.9 0.27 6E-06 50.7 5.5 40 141-183 258-297 (602)
437 TIGR01054 rgy reverse gyrase. 91.9 0.81 1.8E-05 51.7 9.6 78 349-426 120-207 (1171)
438 KOG1513 Nuclear helicase MOP-3 91.7 0.28 6.1E-06 50.8 5.2 163 123-291 264-453 (1300)
439 CHL00176 ftsH cell division pr 91.7 0.95 2.1E-05 47.6 9.3 17 141-157 217-233 (638)
440 cd00561 CobA_CobO_BtuR ATP:cor 91.7 0.66 1.4E-05 39.1 6.7 54 245-300 93-146 (159)
441 PRK13897 type IV secretion sys 91.6 0.18 4E-06 52.3 4.0 49 141-194 159-207 (606)
442 PF02534 T4SS-DNA_transf: Type 91.6 0.16 3.5E-06 51.7 3.6 50 141-195 45-94 (469)
443 TIGR03877 thermo_KaiC_1 KaiC d 91.4 0.29 6.4E-06 44.7 4.7 52 140-195 21-72 (237)
444 COG1223 Predicted ATPase (AAA+ 91.4 2 4.3E-05 39.0 9.5 50 247-296 210-266 (368)
445 TIGR02868 CydC thiol reductant 91.4 0.78 1.7E-05 47.6 8.4 27 140-168 361-387 (529)
446 PRK10865 protein disaggregatio 91.3 0.79 1.7E-05 50.2 8.5 21 137-157 196-216 (857)
447 PHA00012 I assembly protein 91.2 0.77 1.7E-05 43.2 7.1 57 245-304 79-139 (361)
448 cd00544 CobU Adenosylcobinamid 91.2 3.2 6.9E-05 35.6 10.5 86 143-261 2-87 (169)
449 PF06733 DEAD_2: DEAD_2; Inte 91.2 0.13 2.8E-06 44.5 2.0 39 223-261 119-159 (174)
450 KOG0729 26S proteasome regulat 91.1 6.7 0.00014 35.7 12.5 77 98-186 172-250 (435)
451 COG1219 ClpX ATP-dependent pro 91.0 0.13 2.8E-06 47.6 1.9 16 141-156 98-113 (408)
452 PF03266 NTPase_1: NTPase; In 91.0 0.15 3.3E-06 43.6 2.2 23 142-165 1-23 (168)
453 TIGR00708 cobA cob(I)alamin ad 90.9 1.4 3E-05 37.7 7.9 55 245-301 95-149 (173)
454 COG0630 VirB11 Type IV secreto 90.9 0.35 7.5E-06 46.1 4.8 73 100-183 110-182 (312)
455 KOG2227 Pre-initiation complex 90.9 0.77 1.7E-05 45.1 7.0 50 140-190 175-225 (529)
456 COG0464 SpoVK ATPases of the A 90.9 2.1 4.5E-05 44.0 10.8 46 247-292 335-386 (494)
457 cd01130 VirB11-like_ATPase Typ 90.8 0.44 9.5E-06 41.7 5.0 32 124-156 10-41 (186)
458 PRK09354 recA recombinase A; P 90.8 0.56 1.2E-05 45.1 6.0 42 141-185 61-102 (349)
459 COG1197 Mfd Transcription-repa 90.7 1.9 4.2E-05 47.4 10.4 150 332-485 625-807 (1139)
460 COG1702 PhoH Phosphate starvat 90.7 0.18 4E-06 47.3 2.6 56 121-179 126-181 (348)
461 PRK13850 type IV secretion sys 90.4 0.33 7.1E-06 51.1 4.4 49 141-194 140-188 (670)
462 PRK00080 ruvB Holliday junctio 90.4 0.35 7.6E-06 46.6 4.4 17 141-157 52-68 (328)
463 cd01131 PilT Pilus retraction 90.4 0.29 6.2E-06 43.3 3.5 39 142-182 3-41 (198)
464 KOG0741 AAA+-type ATPase [Post 90.4 1.4 3.1E-05 44.0 8.3 71 104-180 493-573 (744)
465 PRK07413 hypothetical protein; 90.4 3.4 7.3E-05 40.1 10.8 105 245-351 123-229 (382)
466 CHL00095 clpC Clp protease ATP 90.4 1.3 2.8E-05 48.6 9.1 18 140-157 200-217 (821)
467 TIGR02012 tigrfam_recA protein 90.3 0.55 1.2E-05 44.6 5.5 42 141-185 56-97 (321)
468 cd00268 DEADc DEAD-box helicas 90.3 3 6.6E-05 36.8 10.1 74 349-426 68-151 (203)
469 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.3 1.6 3.4E-05 36.3 7.7 24 141-166 27-50 (144)
470 PRK08058 DNA polymerase III su 90.2 1.7 3.6E-05 41.9 8.8 41 245-290 108-148 (329)
471 KOG0347 RNA helicase [RNA proc 90.1 0.83 1.8E-05 45.6 6.6 68 353-424 266-346 (731)
472 TIGR01618 phage_P_loop phage n 89.9 0.35 7.5E-06 43.3 3.6 30 232-261 66-95 (220)
473 KOG2170 ATPase of the AAA+ sup 89.9 1 2.2E-05 41.7 6.5 55 248-304 179-237 (344)
474 TIGR03345 VI_ClpV1 type VI sec 89.8 2 4.4E-05 47.0 10.0 30 128-157 192-225 (852)
475 PRK09087 hypothetical protein; 89.8 1.6 3.5E-05 39.4 7.9 16 141-156 45-60 (226)
476 COG5008 PilU Tfp pilus assembl 89.8 0.69 1.5E-05 41.9 5.2 45 98-164 106-150 (375)
477 KOG0736 Peroxisome assembly fa 89.7 1.6 3.5E-05 45.7 8.4 52 245-296 762-823 (953)
478 KOG2004 Mitochondrial ATP-depe 89.7 1.1 2.4E-05 46.4 7.3 48 226-277 487-534 (906)
479 KOG0742 AAA+-type ATPase [Post 89.6 0.7 1.5E-05 44.5 5.4 19 139-157 383-401 (630)
480 TIGR01650 PD_CobS cobaltochela 89.6 1.5 3.3E-05 41.6 7.7 16 141-156 65-80 (327)
481 PF04665 Pox_A32: Poxvirus A32 89.5 0.45 9.8E-06 43.0 4.0 36 141-179 14-49 (241)
482 cd01125 repA Hexameric Replica 89.4 5.2 0.00011 36.5 11.1 55 141-196 2-65 (239)
483 TIGR00763 lon ATP-dependent pr 89.3 1.8 3.9E-05 47.1 9.2 17 141-157 348-364 (775)
484 TIGR00635 ruvB Holliday juncti 89.3 0.35 7.6E-06 46.1 3.4 16 141-156 31-46 (305)
485 PRK09376 rho transcription ter 89.3 0.58 1.3E-05 45.4 4.8 42 125-167 153-195 (416)
486 COG1618 Predicted nucleotide k 89.1 0.86 1.9E-05 38.0 5.0 37 141-179 6-42 (179)
487 TIGR00614 recQ_fam ATP-depende 89.1 2.5 5.5E-05 43.0 9.6 77 349-425 50-134 (470)
488 PF12846 AAA_10: AAA-like doma 89.1 0.44 9.6E-06 45.2 4.0 42 141-185 2-43 (304)
489 COG1120 FepC ABC-type cobalami 89.0 0.79 1.7E-05 41.9 5.3 25 141-167 29-53 (258)
490 PF00265 TK: Thymidine kinase; 89.0 0.37 8E-06 41.6 3.0 38 141-181 2-39 (176)
491 TIGR03819 heli_sec_ATPase heli 89.0 0.65 1.4E-05 44.8 5.0 64 112-183 154-217 (340)
492 PRK11776 ATP-dependent RNA hel 88.9 5.4 0.00012 40.5 12.0 73 351-427 73-156 (460)
493 TIGR02858 spore_III_AA stage I 88.9 3.8 8.2E-05 38.1 9.8 23 141-165 112-134 (270)
494 TIGR02784 addA_alphas double-s 88.9 0.77 1.7E-05 52.3 6.3 55 141-195 11-65 (1141)
495 COG1074 RecB ATP-dependent exo 88.9 0.56 1.2E-05 53.1 5.1 54 141-194 17-72 (1139)
496 PRK10263 DNA translocase FtsK; 88.8 1.3 2.8E-05 49.4 7.6 21 141-161 1011-1031(1355)
497 PRK04841 transcriptional regul 88.8 3.8 8.2E-05 45.7 11.7 45 246-294 120-164 (903)
498 KOG0740 AAA+-type ATPase [Post 88.8 2.8 6.1E-05 41.2 9.1 83 246-345 244-335 (428)
499 PRK05564 DNA polymerase III su 88.8 3.5 7.6E-05 39.4 9.9 40 245-289 91-130 (313)
500 cd00983 recA RecA is a bacter 88.8 0.62 1.4E-05 44.3 4.6 42 141-185 56-97 (325)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-76 Score=529.17 Aligned_cols=368 Identities=31% Similarity=0.491 Sum_probs=338.1
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
...+|.++++.+++++++.. .|+..||++|+++||.++.| +|||+.|+||||||.+|++||++++....+.++++|+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g--~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVL 135 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGG--RDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVL 135 (476)
T ss_pred hhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCC--CcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEe
Confidence 35689999999999999987 99999999999999999999 9999999999999999999999999998888999999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-CccCCCceEEEEEeCc
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEA 256 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVlDEa 256 (502)
+||||||.|+.+.+..++...++.+.++.|+..... ....+...++|+|+|||+|++++.+ ..+++..++++|+|||
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~--q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMML--QANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHH--HHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 999999999999999999999999999998876543 3344556799999999999999995 6788999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHH
Q 010762 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV 336 (502)
Q Consensus 257 h~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 336 (502)
|++++ +.|.+.+..|++.++. .+|+++||||||..+..+....+.+|..+.+.....+.+.+.|.|..++...+ .
T Consensus 214 DrlLd-~dF~~~ld~ILk~ip~---erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K-~ 288 (476)
T KOG0330|consen 214 DRLLD-MDFEEELDYILKVIPR---ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDK-D 288 (476)
T ss_pred Hhhhh-hhhHHHHHHHHHhcCc---cceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccccc-c
Confidence 99998 5899999999999986 88999999999999999999999999999999999999999999999886543 3
Q ss_pred HHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCC
Q 010762 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416 (502)
Q Consensus 337 ~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi 416 (502)
..+..++.+. .+..+||||++...+..++-.|+.+|+.+..+||.|++..|.-.++.|+.|.+.||+|||+++||||+
T Consensus 289 ~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi 366 (476)
T KOG0330|consen 289 TYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI 366 (476)
T ss_pred hhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC
Confidence 3444434443 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 417 ~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
|.|++|||||+| .+..+|+||+||+||+|+.|.+|+|++. .|...+..|+..+++...+++
T Consensus 367 p~Vd~VVNyDiP--------~~skDYIHRvGRtaRaGrsG~~ItlVtq-yDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 367 PHVDVVVNYDIP--------THSKDYIHRVGRTARAGRSGKAITLVTQ-YDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred CCceEEEecCCC--------CcHHHHHHHcccccccCCCcceEEEEeh-hhhHHHHHHHHHHhcCCCccC
Confidence 999999999999 7788899999999999999999999996 788899999999999997765
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-74 Score=551.53 Aligned_cols=376 Identities=33% Similarity=0.541 Sum_probs=339.7
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC------CCCCCe
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP------NLKAPQ 173 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~------~~~~~~ 173 (502)
..|.++++++++.+.++. .||..|||||.++||.++.| +|++..|.||||||++|++|++.++.. ...+|+
T Consensus 91 ~~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~G--rD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~ 167 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSG--RDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI 167 (519)
T ss_pred hhhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccC--CceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence 389999999999999987 99999999999999999999 999999999999999999999999864 456889
Q ss_pred EEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEE
Q 010762 174 ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253 (502)
Q Consensus 174 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVl 253 (502)
+|||+||||||.|+...+..++....++..|++|+..... ....+..+.+|+|+|||||.++++...+.++++.++|+
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~--Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVL 245 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGP--QLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVL 245 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccH--HHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEe
Confidence 9999999999999999999999999999999999886654 33455567999999999999999999999999999999
Q ss_pred eCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccc--cccccceEEEEecCC
Q 010762 254 DEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEE--LSLESVKQYKVYCPD 331 (502)
Q Consensus 254 DEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 331 (502)
||||+|++ +||+.++..|+..+++. .+|++++|||||..++.++..++.+|..+.+.... ....++.|....+.
T Consensus 246 DEADrMld-mGFe~qI~~Il~~i~~~--~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~- 321 (519)
T KOG0331|consen 246 DEADRMLD-MGFEPQIRKILSQIPRP--DRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD- 321 (519)
T ss_pred ccHHhhhc-cccHHHHHHHHHhcCCC--cccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-
Confidence 99999998 69999999999999442 45999999999999999999999999888876543 55667888887877
Q ss_pred hHHHHHHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 332 ELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
...|...+...|.... ...+++||||+++..|..|+..|+..++++..|||+.+|.+|..+++.|++|++.||||||++
T Consensus 322 ~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA 401 (519)
T KOG0331|consen 322 ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA 401 (519)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccc
Confidence 7777777777666664 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHH
Q 010762 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 490 (502)
Q Consensus 411 ~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 490 (502)
+||||+|+|++|||||+| .++++|+||+|||||+|+.|.+++|++. ++......+.+.+......++..+.
T Consensus 402 aRGLDi~dV~lVInydfP--------~~vEdYVHRiGRTGRa~~~G~A~tfft~-~~~~~a~~l~~~l~e~~q~v~~~l~ 472 (519)
T KOG0331|consen 402 ARGLDVPDVDLVINYDFP--------NNVEDYVHRIGRTGRAGKKGTAITFFTS-DNAKLARELIKVLREAGQTVPPDLL 472 (519)
T ss_pred cccCCCccccEEEeCCCC--------CCHHHHHhhcCccccCCCCceEEEEEeH-HHHHHHHHHHHHHHHccCCCChHHH
Confidence 999999999999999999 8999999999999999999999999984 5777888888888888877776665
Q ss_pred HHH
Q 010762 491 DFK 493 (502)
Q Consensus 491 ~~~ 493 (502)
.+.
T Consensus 473 ~~~ 475 (519)
T KOG0331|consen 473 EYA 475 (519)
T ss_pred HHH
Confidence 553
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-73 Score=527.95 Aligned_cols=359 Identities=32% Similarity=0.474 Sum_probs=319.4
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCC---CeEE
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA---PQAL 175 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~---~~~l 175 (502)
..+|.+++|+.++++++.. +||..|||||..+||..|-| +|++.||.||||||.+|++|+|.++...+.+ .++|
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallg--kDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVL 256 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLG--KDICACAATGSGKTAAFALPILERLLYRPKKVAATRVL 256 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhc--chhhheecccCCchhhhHHHHHHHHhcCcccCcceeEE
Confidence 4589999999999999987 99999999999999999999 9999999999999999999999999765543 4899
Q ss_pred EecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-CccCCCceEEEEEe
Q 010762 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYD 254 (502)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVlD 254 (502)
||||||+|+.|++.+.++++..+.+.+...+||-+...+ ...+...+||+|+|||||.+|+.+ ..+++.++.++|+|
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~Q--E~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQ--EAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHH--HHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 999999999999999999999999888888877765543 334455799999999999999987 56889999999999
Q ss_pred CchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCCh--
Q 010762 255 EADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE-- 332 (502)
Q Consensus 255 Eah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 332 (502)
|||+|+++ +|.++++.|++.++. ++|+++|||||+..+.+++...+++|..+++.........+.|.++.+...
T Consensus 335 EADRMLee-gFademnEii~lcpk---~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re 410 (691)
T KOG0338|consen 335 EADRMLEE-GFADEMNEIIRLCPK---NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKRE 410 (691)
T ss_pred hHHHHHHH-HHHHHHHHHHHhccc---cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccc
Confidence 99999986 999999999999877 889999999999999999999999999999999888888888877755422
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcccc
Q 010762 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412 (502)
Q Consensus 333 ~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~ 412 (502)
..+-..+..++.+. -..++|||+.+++.|+++.-.|--+|+++..+||.++|.+|-+.++.|+.+++.||||||+++|
T Consensus 411 ~dRea~l~~l~~rt--f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsR 488 (691)
T KOG0338|consen 411 GDREAMLASLITRT--FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASR 488 (691)
T ss_pred cccHHHHHHHHHHh--cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhc
Confidence 22222333323333 2578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHH
Q 010762 413 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERY 477 (502)
Q Consensus 413 Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~ 477 (502)
||||++|.+||||.+| .+...|+||+|||+|+|+.|.+++|+.+ +++.+++.|-+.
T Consensus 489 GLDI~gV~tVINy~mP--------~t~e~Y~HRVGRTARAGRaGrsVtlvgE-~dRkllK~iik~ 544 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMP--------KTIEHYLHRVGRTARAGRAGRSVTLVGE-SDRKLLKEIIKS 544 (691)
T ss_pred cCCccceeEEEeccCc--------hhHHHHHHHhhhhhhcccCcceEEEecc-ccHHHHHHHHhh
Confidence 9999999999999999 8999999999999999999999999985 477777777666
No 4
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-72 Score=481.30 Aligned_cols=374 Identities=37% Similarity=0.628 Sum_probs=347.0
Q ss_pred CCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEE
Q 010762 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (502)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~l 175 (502)
.....+|+++||..+++++++. +||+.|+.+|+.|||.++.| +|++++|..|+|||.+|.+.+++.+.-.....++|
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkG--rdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKG--RDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred cccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcc--cceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 3456789999999999999997 99999999999999999999 99999999999999999999999988777778999
Q ss_pred EecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeC
Q 010762 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (502)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDE 255 (502)
|+.||||||.|+.+.+..++...++....++|+.+... ..+.+..+++++.+|||++.++++...+....++++|+||
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge--dikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE--DIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccch--hhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999999999998888776443 1233346789999999999999999999999999999999
Q ss_pred chhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHH
Q 010762 256 ADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 335 (502)
Q Consensus 256 ah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 335 (502)
||.|++. ||.+++..+++.+++ ..|++++|||+|.++.+....++.+|..+.+...+.+..++.++++....++.|
T Consensus 178 aDemL~k-gfk~Qiydiyr~lp~---~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewK 253 (400)
T KOG0328|consen 178 ADEMLNK-GFKEQIYDIYRYLPP---GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWK 253 (400)
T ss_pred HHHHHHh-hHHHHHHHHHHhCCC---CceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhh
Confidence 9999986 999999999998876 889999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCC
Q 010762 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 415 (502)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gld 415 (502)
...+.+ ++..+ .-..++|||||+..+..|.+.|++.++.+.++||+|++++|.+++..|+.|+.+|||+||+.+||+|
T Consensus 254 fdtLcd-LYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD 331 (400)
T KOG0328|consen 254 FDTLCD-LYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID 331 (400)
T ss_pred HhHHHH-Hhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence 998888 44444 4567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCH
Q 010762 416 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 489 (502)
Q Consensus 416 i~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 489 (502)
+|.|++|||||+| .+.+.|+||+||.||.|++|.++.|+. .+|...+..|+++++..+.++|-+.
T Consensus 332 v~qVslviNYDLP--------~nre~YIHRIGRSGRFGRkGvainFVk-~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 332 VQQVSLVINYDLP--------NNRELYIHRIGRSGRFGRKGVAINFVK-SDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred cceeEEEEecCCC--------ccHHHHhhhhccccccCCcceEEEEec-HHHHHHHHHHHHHHhhhcccccchh
Confidence 9999999999999 788999999999999999999999998 5688899999999999999998554
No 5
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-72 Score=498.94 Aligned_cols=401 Identities=46% Similarity=0.756 Sum_probs=368.8
Q ss_pred ccCccccccCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHH
Q 010762 83 DSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGML 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il 162 (502)
...+... ++++|+.+..+|++|+|.|+++++++. ++|..|+.||..|+|.+|..+.+++|.++..|+|||.||.+.++
T Consensus 74 ~~~vk~~-dpnsPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~ML 151 (477)
T KOG0332|consen 74 ESNVKLA-DPNSPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTML 151 (477)
T ss_pred hhceeec-CCCCCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHH
Confidence 3444444 588999999999999999999999998 99999999999999999999899999999999999999999999
Q ss_pred hccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-C
Q 010762 163 SRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-K 241 (502)
Q Consensus 163 ~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~ 241 (502)
.++......|+++.|+|||+||.|+.+.+.+.++..+++..+.+.+... .+...-..+|+|+|||.+.+++.. .
T Consensus 152 srvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~-----~rG~~i~eqIviGTPGtv~Dlm~klk 226 (477)
T KOG0332|consen 152 SRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA-----KRGNKLTEQIVIGTPGTVLDLMLKLK 226 (477)
T ss_pred HhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc-----ccCCcchhheeeCCCccHHHHHHHHH
Confidence 9999888899999999999999999999999999998888888776622 222233468999999999999988 7
Q ss_pred ccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccccccccc
Q 010762 242 KLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES 321 (502)
Q Consensus 242 ~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (502)
.+.+..++++|+||||.|++..||.+....|+..+++ +.|+++||||+...+..|+..+..+++.+.+..++..+.+
T Consensus 227 ~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~---~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~ 303 (477)
T KOG0332|consen 227 CIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR---NQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDN 303 (477)
T ss_pred hhChhhceEEEecchhhhhhcccccccchhhhhhcCC---cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccc
Confidence 7789999999999999999988999999999999885 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 322 VKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 322 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
+.|+|+.|.....|+..+.+ |+... .-+..||||.+++.|..++..|...|+.|..+||+|.-.+|..++++|+.|..
T Consensus 304 IkQlyv~C~~~~~K~~~l~~-lyg~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~ 381 (477)
T KOG0332|consen 304 IKQLYVLCACRDDKYQALVN-LYGLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKE 381 (477)
T ss_pred hhhheeeccchhhHHHHHHH-HHhhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcc
Confidence 99999999999999999988 55554 56789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCc
Q 010762 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 481 (502)
Q Consensus 402 ~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~ 481 (502)
+|||+|++++||+|++.|+.|||||+|...... ++.++|+||+|||||.|+.|.++.|+.+..++.++..|+++++..
T Consensus 382 kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~--pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 382 KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGE--PDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred eEEEEechhhcccccceEEEEEecCCccccCCC--CCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 999999999999999999999999999754443 689999999999999999999999999999999999999999888
Q ss_pred ccccc-CCHHHHHHHHH
Q 010762 482 VTEVR-NSDEDFKAALK 497 (502)
Q Consensus 482 ~~~~~-~~~~~~~~~~~ 497 (502)
+.++. +++++++++.+
T Consensus 460 i~~~~~~d~~E~eki~~ 476 (477)
T KOG0332|consen 460 IKRLDPDDLDELEKIVK 476 (477)
T ss_pred ceecCCccHHHHHHHhc
Confidence 88776 89999998875
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-69 Score=543.81 Aligned_cols=365 Identities=37% Similarity=0.601 Sum_probs=330.7
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC--CCCCCeEEEe
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--NLKAPQALCI 177 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~--~~~~~~~lil 177 (502)
..|.++++++.+++++.+ .||..|||||.++||.++.| +|++++|+||||||++|++|+++.+.. ......+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g--~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAG--RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEE
Confidence 679999999999999997 99999999999999999999 999999999999999999999999873 2222229999
Q ss_pred cCcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCc
Q 010762 178 CPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEa 256 (502)
+||||||.|+++.+..++... ++.+.+++|+.+...+. ..+..+++|+|+|||||++++....+.+..+.++|+|||
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~--~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI--EALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH--HHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 999999999999999999998 78888999887665544 223336999999999999999999999999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccccc--ccccceEEEEecCChHH
Q 010762 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL--SLESVKQYKVYCPDELA 334 (502)
Q Consensus 257 h~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 334 (502)
|+|++ +||.+.+..|+..++. ++|+++||||+|..+..+...++.+|..+.+..... ....+.|+++.+.....
T Consensus 184 DrmLd-~Gf~~~i~~I~~~~p~---~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~ 259 (513)
T COG0513 184 DRMLD-MGFIDDIEKILKALPP---DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEE 259 (513)
T ss_pred hhhhc-CCCHHHHHHHHHhCCc---ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHH
Confidence 99998 5999999999999987 789999999999999999999999998888875555 78899999999987767
Q ss_pred HHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCC
Q 010762 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGF 414 (502)
Q Consensus 335 k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gl 414 (502)
|...+...+... ...++||||+++..++.++..|...|+.+..|||+|+|.+|.++++.|++|..+||||||+++|||
T Consensus 260 k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 260 KLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred HHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 888877754433 344799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccc
Q 010762 415 DQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (502)
Q Consensus 415 di~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~ 483 (502)
|+|++++|||||+| .+++.|+||+|||||+|+.|.+++|+.+..+...+..+++.++..++
T Consensus 338 Di~~v~~VinyD~p--------~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 338 DIPDVSHVINYDLP--------LDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CccccceeEEccCC--------CCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999 88999999999999999999999999975588899999999877755
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.8e-68 Score=496.67 Aligned_cols=385 Identities=29% Similarity=0.431 Sum_probs=338.0
Q ss_pred ccccCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC-
Q 010762 88 TVTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD- 166 (502)
Q Consensus 88 ~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~- 166 (502)
....|...+.+..+|++.+++.++++.+.. .||..|+|||+++||..++. +|+|..|+||||||++|++|++..+.
T Consensus 233 is~kg~~lpnplrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~--rD~igvaETgsGktaaf~ipLl~~Iss 309 (673)
T KOG0333|consen 233 ISIKGGRLPNPLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQN--RDPIGVAETGSGKTAAFLIPLLIWISS 309 (673)
T ss_pred eeecCCCCCccccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhcc--CCeeeEEeccCCccccchhhHHHHHHc
Confidence 334577777889999999999999998876 99999999999999999998 99999999999999999999987662
Q ss_pred --------CCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHH
Q 010762 167 --------PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM 238 (502)
Q Consensus 167 --------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l 238 (502)
....++.++|+.|||+|++|+.+.-.+++..+++.+..++|+.+...+.+ .+..+|+|+|+||++|.+.+
T Consensus 310 lP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~f--qls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 310 LPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGF--QLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred CCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhh--hhhccceeeecCchHHHHHH
Confidence 33458899999999999999999999999999999999999987665432 45558999999999999999
Q ss_pred HcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC----------------------eeEEEEeecCChhH
Q 010762 239 SAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH----------------------CQVLLFSATFNETV 296 (502)
Q Consensus 239 ~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~----------------------~q~v~~SAT~~~~~ 296 (502)
.+..+-++.+.+||+||||+|++ +||.+.+..++..++..... +|++.||||+|+.+
T Consensus 388 enr~lvl~qctyvvldeadrmiD-mgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~v 466 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMID-MGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAV 466 (673)
T ss_pred HHHHHHhccCceEeccchhhhhc-ccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHH
Confidence 99999999999999999999998 69999999999988754322 79999999999999
Q ss_pred HHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc
Q 010762 297 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 376 (502)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~ 376 (502)
..+++.++..|..+.+.....+...+.|....+.... +...|...+... ...++|||+|+++.|+.|++.|...|++
T Consensus 467 erlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~ 543 (673)
T KOG0333|consen 467 ERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYK 543 (673)
T ss_pred HHHHHHHhhCCeEEEeccCCCCccchheEEEEecchH-HHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccce
Confidence 9999999999999999999999999999877776544 466666644443 4679999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc
Q 010762 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456 (502)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g 456 (502)
|..|||+-+|++|+.++..|++|..+||||||+++||||+|+|.+|||||++ .|+++|+||||||||+|+.|
T Consensus 544 ~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydma--------ksieDYtHRIGRTgRAGk~G 615 (673)
T KOG0333|consen 544 VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMA--------KSIEDYTHRIGRTGRAGKSG 615 (673)
T ss_pred EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchh--------hhHHHHHHHhccccccccCc
Confidence 9999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred eEEEEeeCCccHHHHHHHHHHhCCccccccCCH
Q 010762 457 VVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 489 (502)
Q Consensus 457 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 489 (502)
.+++|+++.+...++...+-...-...-.|.++
T Consensus 616 taiSflt~~dt~v~ydLkq~l~es~~s~~P~El 648 (673)
T KOG0333|consen 616 TAISFLTPADTAVFYDLKQALRESVKSHCPPEL 648 (673)
T ss_pred eeEEEeccchhHHHHHHHHHHHHhhhccCChhh
Confidence 999999977655554444444434444444333
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-68 Score=471.93 Aligned_cols=376 Identities=31% Similarity=0.444 Sum_probs=329.5
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+.|||++++.+.+.. +|+..|||+|..+||.||+| +||+.+|.||||||.+|.+|+++++...+.+..++|++
T Consensus 6 ~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeG--rdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEG--RDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred cCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcc--cccccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 4679999999999999987 99999999999999999999 99999999999999999999999999988999999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC----ccCCCceEEEEEe
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK----KLGFSRLKILVYD 254 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~~~~~~lVlD 254 (502)
|||+||.|+.+.|..++...++++..++|+.+.-. ....+...+|++|+|||++.+++..+ .+.+.+++++|+|
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~--qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM--QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhh--hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 99999999999999999999999988888875543 34456667999999999999999875 3568899999999
Q ss_pred CchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcC--CceeeecccccccccceEEEEecCCh
Q 010762 255 EADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKD--YNQLFVKKEELSLESVKQYKVYCPDE 332 (502)
Q Consensus 255 Eah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (502)
|||+++. ..|.+.+..+..-++. .+|+++||||+++.+..+....... ...+...........+.+.|+.++..
T Consensus 161 EADrvL~-~~f~d~L~~i~e~lP~---~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~ 236 (442)
T KOG0340|consen 161 EADRVLA-GCFPDILEGIEECLPK---PRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID 236 (442)
T ss_pred chhhhhc-cchhhHHhhhhccCCC---ccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh
Confidence 9999998 4898888888777766 6899999999999887766555444 23333345556677888889988765
Q ss_pred HHHHHHHHHHHHHhcc-cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccc
Q 010762 333 LAKVMVIRDRIFELGE-KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (502)
Q Consensus 333 ~~k~~~l~~~l~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 411 (502)
..... +...+..... ..+.++||+|+..+|+.|+..|..+++.+..+||.|+|.+|...+.+|+.+..+||||||+++
T Consensus 237 vkdaY-Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAs 315 (442)
T KOG0340|consen 237 VKDAY-LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVAS 315 (442)
T ss_pred hhHHH-HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhh
Confidence 44433 3343444433 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHH
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 491 (502)
||||||.|+.|||||.| .++.+|+||+||++|+|+.|.++.|++ ..|...+..|++..|.++.+++...+.
T Consensus 316 RGLDIP~V~LVvN~diP--------r~P~~yiHRvGRtARAGR~G~aiSivt-~rDv~l~~aiE~~igkKl~e~~~~~~~ 386 (442)
T KOG0340|consen 316 RGLDIPTVELVVNHDIP--------RDPKDYIHRVGRTARAGRKGMAISIVT-QRDVELLQAIEEEIGKKLTEYNKVQRT 386 (442)
T ss_pred cCCCCCceeEEEecCCC--------CCHHHHHHhhcchhcccCCcceEEEec-hhhHHHHHHHHHHHhcccccccccchh
Confidence 99999999999999999 899999999999999999999999999 679999999999999999999854444
Q ss_pred HH
Q 010762 492 FK 493 (502)
Q Consensus 492 ~~ 493 (502)
..
T Consensus 387 ~~ 388 (442)
T KOG0340|consen 387 VE 388 (442)
T ss_pred hh
Confidence 33
No 9
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-68 Score=497.20 Aligned_cols=366 Identities=30% Similarity=0.479 Sum_probs=328.3
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC----CCCCCeE
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP----NLKAPQA 174 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~----~~~~~~~ 174 (502)
...|.+++|+...+++|.. .+|..||.+|+.+||..|.| +|++..|.||||||++|++|++++|.. ...|.-+
T Consensus 68 ~~kF~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G--~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQG--HDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hhhHHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccC--cccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 5679999999999999987 99999999999999999999 999999999999999999999999843 3356679
Q ss_pred EEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-ccCCCceEEEEE
Q 010762 175 LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKILVY 253 (502)
Q Consensus 175 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lVl 253 (502)
|||.|||+||.|+++.+.+.+.++.++...++||..... .......++|+|||||||++|+..+ .++..++.++|+
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~---E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF---ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH---HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 999999999999999999999999999999998875432 2223345899999999999999875 567889999999
Q ss_pred eCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccc--ccccccceEEEEecCC
Q 010762 254 DEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE--ELSLESVKQYKVYCPD 331 (502)
Q Consensus 254 DEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 331 (502)
||||+|++ +||...+..|+..++. .+|+++||||.+..+.++++..+.+|..+.+... ..++..+.|+|+.++.
T Consensus 222 DEADR~LD-MGFk~tL~~Ii~~lP~---~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l 297 (758)
T KOG0343|consen 222 DEADRMLD-MGFKKTLNAIIENLPK---KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL 297 (758)
T ss_pred ccHHHHHH-HhHHHHHHHHHHhCCh---hheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh
Confidence 99999998 6999999999999987 7899999999999999999999999998887633 4677889999988875
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 409 (502)
..|+..|...|... ...++|||+.|++++..+++.++.+ |+.+..|||.|+|..|..++..|...+..||+|||+
T Consensus 298 -~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv 374 (758)
T KOG0343|consen 298 -EDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDV 374 (758)
T ss_pred -hhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehh
Confidence 45777877766554 4678999999999999999999876 899999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
++||||+|.|+|||.+|+| .++++|+||+||++|.+..|.+++++++.+...++..+++.. +.++++.
T Consensus 375 ~aRGLDFpaVdwViQ~DCP--------edv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~ 442 (758)
T KOG0343|consen 375 AARGLDFPAVDWVIQVDCP--------EDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIK 442 (758)
T ss_pred hhccCCCcccceEEEecCc--------hhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhc
Confidence 9999999999999999999 899999999999999999999999999988788888888876 7777765
No 10
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-67 Score=462.68 Aligned_cols=372 Identities=35% Similarity=0.584 Sum_probs=339.2
Q ss_pred CCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEE
Q 010762 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~li 176 (502)
..-..|+++.|.++++.+++. .||+.|+|+|..+||.++.| +|+++.|..|+|||.+|.+|+++.+......-+++|
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtG--rdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~i 158 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTG--RDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAII 158 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecc--hhhhhhccCCCCCccceechhhhhcCccccceeEEE
Confidence 345689999999999999997 99999999999999999999 999999999999999999999999998888889999
Q ss_pred ecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCc
Q 010762 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (502)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEa 256 (502)
++|||+||.|+.+.+.++++++++.+....|+.+... ..-++....+++|+||||+++++..+...++++.++|+|||
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrD--DI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRD--DIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCccccc--ceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 9999999999999999999999988887777765443 33455667899999999999999999889999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHH
Q 010762 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV 336 (502)
Q Consensus 257 h~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 336 (502)
|.+++ ..|...+..++..+++ .+|++++|||+|-.+..|..+++.+|..+... ++.++.++.|+|.++. +..|+
T Consensus 237 DKlLs-~~F~~~~e~li~~lP~---~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~-e~qKv 310 (459)
T KOG0326|consen 237 DKLLS-VDFQPIVEKLISFLPK---ERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVE-ERQKV 310 (459)
T ss_pred hhhhc-hhhhhHHHHHHHhCCc---cceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeec-hhhhh
Confidence 99998 4899999999998887 78999999999999999999999999887654 5778889999998876 45677
Q ss_pred HHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCC
Q 010762 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416 (502)
Q Consensus 337 ~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi 416 (502)
..+-.++.++ .-...||||||...++.+|+.+.++|+.|..+|+.|.|+.|.+++..|++|.++.|||||.+.||+|+
T Consensus 311 hCLntLfskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi 388 (459)
T KOG0326|consen 311 HCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI 388 (459)
T ss_pred hhHHHHHHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc
Confidence 7776644443 45678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHH
Q 010762 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 490 (502)
Q Consensus 417 ~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 490 (502)
+++++|||||+| .++++|+||+||.||.|..|.++.+++ .+|...+..|+..+|.+|+++|...+
T Consensus 389 qavNvVINFDfp--------k~aEtYLHRIGRsGRFGhlGlAInLit-yedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 389 QAVNVVINFDFP--------KNAETYLHRIGRSGRFGHLGLAINLIT-YEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred ceeeEEEecCCC--------CCHHHHHHHccCCccCCCcceEEEEEe-hhhhhhHHHHHHHhccccccCCCcCC
Confidence 999999999999 899999999999999999999999998 46888999999999999999986543
No 11
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.8e-66 Score=479.74 Aligned_cols=383 Identities=29% Similarity=0.400 Sum_probs=324.1
Q ss_pred CCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC----CCC
Q 010762 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKA 171 (502)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~----~~~ 171 (502)
......|+...|++..++++.. +||..+|++|..+||.++.| +|+++.|.||||||++|++|+++.+... .++
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~g--kDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~ 154 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEG--KDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNG 154 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCC--ccceeeeccCCCceeeehhHHHHHHHhcccCCCCC
Confidence 4446679999999999999997 99999999999999999999 9999999999999999999999987432 245
Q ss_pred CeEEEecCcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc-cCCCceE
Q 010762 172 PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLK 249 (502)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~ 249 (502)
..++||||||+||.|++.+++++.... ++.+..++|+..... ....+..+|+|+|+|||||.+|+++.. +.+.+++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~--e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV--EADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLK 232 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH--HHHHhhccccEEEeCCchHHhHhhcCCcchhhccc
Confidence 579999999999999999999999888 788888888875543 233344489999999999999999843 4567789
Q ss_pred EEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcC-Cceeee--cccccccccceEEE
Q 010762 250 ILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKD-YNQLFV--KKEELSLESVKQYK 326 (502)
Q Consensus 250 ~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~ 326 (502)
++|+||||++++ +||++.+..|++.++. .+|+++||||.+..+++++...+.. +..+.. .....+...+.|.|
T Consensus 233 ~lvlDEADrlLd-~GF~~di~~Ii~~lpk---~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgy 308 (543)
T KOG0342|consen 233 CLVLDEADRLLD-IGFEEDVEQIIKILPK---QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGY 308 (543)
T ss_pred eeEeecchhhhh-cccHHHHHHHHHhccc---cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceE
Confidence 999999999998 6999999999999986 8899999999999999999888776 444433 23456678899999
Q ss_pred EecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Q 010762 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 406 (502)
Q Consensus 327 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~ 406 (502)
+.++.... ...+...+.+.. ...++||||+|...+..++..|+...++|..+||+++|..|..+...|++.+..||||
T Consensus 309 vv~~~~~~-f~ll~~~LKk~~-~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~c 386 (543)
T KOG0342|consen 309 VVAPSDSR-FSLLYTFLKKNI-KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVC 386 (543)
T ss_pred Eeccccch-HHHHHHHHHHhc-CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEe
Confidence 98887655 566666555554 3489999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 407 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 407 T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
||+++||+|+|+|++||+||+| .++.+|+||+|||||.|+.|.+++|+.+ .+..+++.+++.--.+++--+
T Consensus 387 TDVaARGlD~P~V~~VvQ~~~P--------~d~~~YIHRvGRTaR~gk~G~alL~l~p-~El~Flr~LK~lpl~~~e~~~ 457 (543)
T KOG0342|consen 387 TDVAARGLDIPDVDWVVQYDPP--------SDPEQYIHRVGRTAREGKEGKALLLLAP-WELGFLRYLKKLPLEEFEFPP 457 (543)
T ss_pred cchhhccCCCCCceEEEEeCCC--------CCHHHHHHHhccccccCCCceEEEEeCh-hHHHHHHHHhhCCCcccCCCC
Confidence 9999999999999999999999 8999999999999999999999999885 466777777743333332222
Q ss_pred CCHHHHHHHHHH
Q 010762 487 NSDEDFKAALKA 498 (502)
Q Consensus 487 ~~~~~~~~~~~~ 498 (502)
...+++..+++.
T Consensus 458 ~~~~~v~~~~~~ 469 (543)
T KOG0342|consen 458 LKPEDVQSQLEK 469 (543)
T ss_pred CCHHHHHHHHHH
Confidence 556666555543
No 12
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-67 Score=489.39 Aligned_cols=370 Identities=25% Similarity=0.411 Sum_probs=303.3
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC----
Q 010762 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL---- 169 (502)
Q Consensus 94 ~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~---- 169 (502)
........|..|+++.+++++|.. +||..|||||..+||.+..|. .|++..|.||||||++|.+|++.++....
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk-~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGK-VDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccc-hhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 344556679999999999999986 999999999999999999985 79999999999999999999999663221
Q ss_pred -------CCC--eEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc
Q 010762 170 -------KAP--QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA 240 (502)
Q Consensus 170 -------~~~--~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~ 240 (502)
..+ .+||++||||||.|+..++..++...++++..+.||-.... ..+.+...++|+|+||||||.++..
T Consensus 253 e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK--QqRlL~~~p~IVVATPGRlweli~e 330 (731)
T KOG0347|consen 253 ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK--QQRLLNQRPDIVVATPGRLWELIEE 330 (731)
T ss_pred hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH--HHHHHhcCCCEEEecchHHHHHHHh
Confidence 233 49999999999999999999999999999999988876543 2334444789999999999999988
Q ss_pred Ccc---CCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh--cCCCeeEEEEeecCChh--------------------
Q 010762 241 KKL---GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER--SSGHCQVLLFSATFNET-------------------- 295 (502)
Q Consensus 241 ~~~---~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~--~~~~~q~v~~SAT~~~~-------------------- 295 (502)
+.. ++..++|+|+||||+|+.. |+.+++..+++.+.. ....+|+++||||++-.
T Consensus 331 ~n~~l~~~k~vkcLVlDEaDRmvek-ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ 409 (731)
T KOG0347|consen 331 DNTHLGNFKKVKCLVLDEADRMVEK-GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNA 409 (731)
T ss_pred hhhhhhhhhhceEEEEccHHHHhhh-ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhH
Confidence 654 5788999999999999986 777888888888863 23467999999997521
Q ss_pred -HHHHHHH--HhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh
Q 010762 296 -VKNFVTR--IVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD 372 (502)
Q Consensus 296 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 372 (502)
++.++.. +...|..+...+...+...+....+.|+.....+..+ +-+....+++|||||+++.+.+|+-+|..
T Consensus 410 kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~yly----Yfl~ryPGrTlVF~NsId~vKRLt~~L~~ 485 (731)
T KOG0347|consen 410 KIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLY----YFLTRYPGRTLVFCNSIDCVKRLTVLLNN 485 (731)
T ss_pred HHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEE----EEEeecCCceEEEechHHHHHHHHHHHhh
Confidence 2222222 2234455555555555555666666665443332221 12233579999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccC
Q 010762 373 FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 452 (502)
Q Consensus 373 ~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~ 452 (502)
+++..+.||+.|.|.+|.+.+++|++....||||||+++||||||+|+|||||..| ++.+.|+||.|||+|+
T Consensus 486 L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVP--------rtseiYVHRSGRTARA 557 (731)
T KOG0347|consen 486 LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVP--------RTSEIYVHRSGRTARA 557 (731)
T ss_pred cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecC--------CccceeEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcceEEEEeeCCccHHHHHHHHHHhCCc
Q 010762 453 GRKGVVFNLLMDGDDMIIMEKIERYFDIK 481 (502)
Q Consensus 453 g~~g~~~~~~~~~~~~~~~~~i~~~l~~~ 481 (502)
+..|.++.|+.+.+ ...+..+.+.|...
T Consensus 558 ~~~Gvsvml~~P~e-~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 558 NSEGVSVMLCGPQE-VGPLKKLCKTLKKK 585 (731)
T ss_pred cCCCeEEEEeChHH-hHHHHHHHHHHhhc
Confidence 99999999998764 66777777777554
No 13
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.4e-65 Score=520.35 Aligned_cols=385 Identities=29% Similarity=0.431 Sum_probs=329.3
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC---
Q 010762 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--- 167 (502)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~--- 167 (502)
.+...+.+..+|+++++++.+++.|.+ +||..|||+|.++||.++.| +|+|++||||||||++|++|++.++..
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G--~dvI~~ApTGSGKTlaylLP~l~~i~~~~~ 197 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSG--RDMIGIAETGSGKTLAFLLPAIVHINAQPL 197 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CCEEEEeCCCChHHHHHHHHHHHHHHhccc
Confidence 456677888999999999999999987 99999999999999999999 999999999999999999999987643
Q ss_pred --CCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCC
Q 010762 168 --NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245 (502)
Q Consensus 168 --~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 245 (502)
...++.+|||+||++||.|+.+.+.+++...++.+.+.+++.....+ ......+++|+|+||++|.+++......+
T Consensus 198 ~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q--~~~l~~~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 198 LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQ--IYALRRGVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHH--HHHHHcCCCEEEECHHHHHHHHHcCCCCh
Confidence 23467899999999999999999999998888888888877654322 12233468999999999999999888889
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhc-CCceeeecccc-cccccce
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK-DYNQLFVKKEE-LSLESVK 323 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 323 (502)
.++++|||||||+|++ .+|...+..++..+.. .+|+++||||+|..+..+...++. .+..+.+.... .....+.
T Consensus 276 ~~v~~lViDEAd~mld-~gf~~~i~~il~~~~~---~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~ 351 (545)
T PTZ00110 276 RRVTYLVLDEADRMLD-MGFEPQIRKIVSQIRP---DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIK 351 (545)
T ss_pred hhCcEEEeehHHhhhh-cchHHHHHHHHHhCCC---CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCee
Confidence 9999999999999998 5899999888887754 789999999999999998888775 35555444333 2234455
Q ss_pred EEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeE
Q 010762 324 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (502)
Q Consensus 324 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~i 403 (502)
+.+..+. ...|...+...+........++||||++++.|+.++..|...++.+..+||++++.+|..+++.|++|...|
T Consensus 352 q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~I 430 (545)
T PTZ00110 352 QEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPI 430 (545)
T ss_pred EEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcE
Confidence 5554443 345566666655555446789999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccc
Q 010762 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (502)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~ 483 (502)
||||++++||||+|++++|||||+| .+++.|+||+||+||+|+.|.+++|+++ ++......+.+.+....+
T Consensus 431 LVaTdv~~rGIDi~~v~~VI~~d~P--------~s~~~yvqRiGRtGR~G~~G~ai~~~~~-~~~~~~~~l~~~l~~~~q 501 (545)
T PTZ00110 431 MIATDVASRGLDVKDVKYVINFDFP--------NQIEDYVHRIGRTGRAGAKGASYTFLTP-DKYRLARDLVKVLREAKQ 501 (545)
T ss_pred EEEcchhhcCCCcccCCEEEEeCCC--------CCHHHHHHHhcccccCCCCceEEEEECc-chHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999 8899999999999999999999999985 577788999999998888
Q ss_pred cccCCHHHHHH
Q 010762 484 EVRNSDEDFKA 494 (502)
Q Consensus 484 ~~~~~~~~~~~ 494 (502)
++|..+.++..
T Consensus 502 ~vp~~l~~~~~ 512 (545)
T PTZ00110 502 PVPPELEKLSN 512 (545)
T ss_pred CCCHHHHHHHH
Confidence 99877777643
No 14
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-66 Score=468.51 Aligned_cols=379 Identities=29% Similarity=0.464 Sum_probs=334.4
Q ss_pred CCCCccC-CCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC------CCC
Q 010762 98 SATTFED-LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP------NLK 170 (502)
Q Consensus 98 ~~~~f~~-~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~------~~~ 170 (502)
|..+|++ ++-.+++++.+.+ .||.+|||||++|||.+|+| .|++..|.||+|||++||+|.+-++.. ...
T Consensus 217 P~ctFddAFq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG--~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQG--IDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHh-ccCCCCCcchhcccceeecC--cceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 4456665 6788999999987 99999999999999999999 999999999999999999999988743 345
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEE
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (502)
++.+|++.|||+|+.|+.-...++.- .+....|++++++.+.+. ..+..+.+|+|+||++|.++...+.+++..+.+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~eqi--e~lkrgveiiiatPgrlndL~~~n~i~l~siTY 370 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNEQI--EDLKRGVEIIIATPGRLNDLQMDNVINLASITY 370 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchhHH--HHHhcCceEEeeCCchHhhhhhcCeeeeeeeEE
Confidence 77899999999999999988887754 367888999988776533 334557899999999999999999999999999
Q ss_pred EEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccc-cccceEEEEec
Q 010762 251 LVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS-LESVKQYKVYC 329 (502)
Q Consensus 251 lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 329 (502)
||+||||+|++ +||..++..|+-.+++ .+|+++.|||||+.+..+...++++|..+.+...... ...+.|.+ .+
T Consensus 371 lVlDEADrMLD-MgFEpqIrkilldiRP---DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v 445 (629)
T KOG0336|consen 371 LVLDEADRMLD-MGFEPQIRKILLDIRP---DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IV 445 (629)
T ss_pred EEecchhhhhc-ccccHHHHHHhhhcCC---cceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-Ee
Confidence 99999999998 6999999988877766 8899999999999999999999999998888776654 44566665 66
Q ss_pred CChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc
Q 010762 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409 (502)
Q Consensus 330 ~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 409 (502)
..+..|...+.. +........++||||.++..|..|...|.-.|+.+..|||+-.|.+|+..++.|+.|.++||||||+
T Consensus 446 ~~d~~k~~~~~~-f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDl 524 (629)
T KOG0336|consen 446 TTDSEKLEIVQF-FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDL 524 (629)
T ss_pred cccHHHHHHHHH-HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEech
Confidence 667777766555 4555568899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCH
Q 010762 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 489 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 489 (502)
++||||+++++||+|||+| .+++.|+||+||+||+|+.|.+++|++ ..|+.+...+.+.|...-+++|+++
T Consensus 525 aSRGlDv~DiTHV~NyDFP--------~nIeeYVHRvGrtGRaGr~G~sis~lt-~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 525 ASRGLDVPDITHVYNYDFP--------RNIEEYVHRVGRTGRAGRTGTSISFLT-RNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred hhcCCCchhcceeeccCCC--------ccHHHHHHHhcccccCCCCcceEEEEe-hhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 9999999999999999999 899999999999999999999999998 5689999999999999999999877
Q ss_pred HHHHHHHH
Q 010762 490 EDFKAALK 497 (502)
Q Consensus 490 ~~~~~~~~ 497 (502)
..+-...+
T Consensus 596 ~~mAeryk 603 (629)
T KOG0336|consen 596 VRMAERYK 603 (629)
T ss_pred HHHHHHHH
Confidence 76654433
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-64 Score=501.69 Aligned_cols=376 Identities=28% Similarity=0.457 Sum_probs=320.9
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC-------CCC
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-------LKA 171 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~-------~~~ 171 (502)
..+|++++|++.++++|.+ +||..|||+|.++||.++.| +|++++||||||||++|++|+++.+... ..+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g--~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAG--RDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred CCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 4689999999999999987 99999999999999999999 9999999999999999999999887432 235
Q ss_pred CeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEE
Q 010762 172 PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKIL 251 (502)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 251 (502)
+++|||+||++||.|+++.+..+....++.+...+++...... ......+++|+|+||++|.+++....+.+.++++|
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~--~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~l 161 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQ--LKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVV 161 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCcccccccEE
Confidence 7899999999999999999999999889888888776543321 12233468999999999999999888889999999
Q ss_pred EEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCC
Q 010762 252 VYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331 (502)
Q Consensus 252 VlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (502)
|+||||++++ .+|...+..++..++.. ...+.++||||++..+..+....+.++..+.+.........+.+.+.+. .
T Consensus 162 ViDEad~l~~-~~f~~~i~~i~~~~~~~-~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~ 238 (423)
T PRK04837 162 VLDEADRMFD-LGFIKDIRWLFRRMPPA-NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-S 238 (423)
T ss_pred EEecHHHHhh-cccHHHHHHHHHhCCCc-cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-C
Confidence 9999999998 48998888888877542 2567899999999999998888888887777665555555566555544 3
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccc
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 411 (502)
...+...+...+.. ....++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 239 ~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~ 316 (423)
T PRK04837 239 NEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAA 316 (423)
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhh
Confidence 45566666554433 2467899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHH
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 491 (502)
||||+|++++|||||+| .++..|+||+||+||.|+.|.+++|+.+ ++...+..++++++..++..+-+.++
T Consensus 317 rGiDip~v~~VI~~d~P--------~s~~~yiqR~GR~gR~G~~G~ai~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 387 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLP--------DDCEDYVHRIGRTGRAGASGHSISLACE-EYALNLPAIETYIGHSIPVSKYDSDA 387 (423)
T ss_pred cCCCccccCEEEEeCCC--------CchhheEeccccccCCCCCeeEEEEeCH-HHHHHHHHHHHHhCCCCCCccCChhh
Confidence 99999999999999999 7899999999999999999999999985 46667888999999998766544444
Q ss_pred HH
Q 010762 492 FK 493 (502)
Q Consensus 492 ~~ 493 (502)
+.
T Consensus 388 ~~ 389 (423)
T PRK04837 388 LL 389 (423)
T ss_pred hh
Confidence 43
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-64 Score=464.99 Aligned_cols=349 Identities=31% Similarity=0.454 Sum_probs=304.5
Q ss_pred CCCccCCC--CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC---CC--C
Q 010762 99 ATTFEDLN--LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---LK--A 171 (502)
Q Consensus 99 ~~~f~~~~--l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~---~~--~ 171 (502)
...|++++ |+++++.++.. +||...||+|..+||.++.+ +|+++.|+||||||+||++|++..+..+ .. .
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~--KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~ 79 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKN--KDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQ 79 (567)
T ss_pred CcchhhcCCCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcC--CceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccc
Confidence 34677775 55999999986 99999999999999999998 9999999999999999999999988321 11 2
Q ss_pred CeEEEecCcHHHHHHHHHHHHHhhcc-cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC--ccCCCce
Q 010762 172 PQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK--KLGFSRL 248 (502)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~~~~ 248 (502)
..+|||+||||||.|+.+++..+... .+++..+++|+... ..........+++|+|+|||||.+++... .+++.++
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v-~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSV-EEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccH-HHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 36899999999999999999988777 56777788887433 33444555667899999999999999884 3456699
Q ss_pred EEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccccc--ccccceEEE
Q 010762 249 KILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL--SLESVKQYK 326 (502)
Q Consensus 249 ~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 326 (502)
.++|+||||++++ +||...++.|+..+++ .+++-+||||.+..+.++....+.++..+.+..... ++..+..+|
T Consensus 159 e~LVLDEADrLld-mgFe~~~n~ILs~LPK---QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y 234 (567)
T KOG0345|consen 159 EILVLDEADRLLD-MGFEASVNTILSFLPK---QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEY 234 (567)
T ss_pred ceEEecchHhHhc-ccHHHHHHHHHHhccc---ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhccee
Confidence 9999999999998 7999999999999988 778999999999999999999999999998887775 677788888
Q ss_pred EecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEE
Q 010762 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVL 404 (502)
Q Consensus 327 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iL 404 (502)
..|.. ..|...+.+.+.. ...+++|||++|+..++..+..|... ...++.+||.|.+..|..+++.|+.....+|
T Consensus 235 ~v~~a-~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl 311 (567)
T KOG0345|consen 235 LVCEA-DEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVL 311 (567)
T ss_pred eEecH-HHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceE
Confidence 88764 5677777775554 36789999999999999999999865 6789999999999999999999999888999
Q ss_pred EEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 405 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 405 v~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
+|||+++||||||++++||+||+| .+++.|+||+|||||+|+.|.+++|+.+.+
T Consensus 312 ~~TDVaARGlDip~iD~VvQ~DpP--------~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E 365 (567)
T KOG0345|consen 312 FCTDVAARGLDIPGIDLVVQFDPP--------KDPSSFVHRCGRTARAGREGNAIVFLNPRE 365 (567)
T ss_pred EeehhhhccCCCCCceEEEecCCC--------CChhHHHhhcchhhhccCccceEEEecccH
Confidence 999999999999999999999999 788889999999999999999999999743
No 17
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-64 Score=464.98 Aligned_cols=384 Identities=31% Similarity=0.484 Sum_probs=356.5
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC---
Q 010762 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--- 167 (502)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~--- 167 (502)
.+..|+.+.++|+.+++...|..++.+ .-|.+|||+|.+++|..+.| +|++.+|.||||||.+|++|++-+++.
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsg--rdvigIAktgSgktaAfi~pm~~himdq~e 290 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSG--RDVIGIAKTGSGKTAAFIWPMIVHIMDQPE 290 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhh-hhcccCCccccccccccccc--ccchheeeccCcchhHHHHHHHHHhcchhh
Confidence 477888999999999999999999986 89999999999999999999 999999999999999999999999853
Q ss_pred --CCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCC
Q 010762 168 --NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245 (502)
Q Consensus 168 --~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 245 (502)
...+|..||+||||+||.|++.++++|++.++++++|++++.+.+.+. +.+..++.||||||+||.+++.....++
T Consensus 291 L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~--k~Lk~g~EivVaTPgRlid~VkmKatn~ 368 (731)
T KOG0339|consen 291 LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQS--KELKEGAEIVVATPGRLIDMVKMKATNL 368 (731)
T ss_pred hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHH--HhhhcCCeEEEechHHHHHHHHhhcccc
Confidence 357889999999999999999999999999999999999999877643 3344789999999999999999999999
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEE
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY 325 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
.++++|||||||+|++ +||..++..|...++. .+|+++||||++..++.+++.++..|..+....-......+.|.
T Consensus 369 ~rvS~LV~DEadrmfd-mGfe~qVrSI~~hirp---drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~ 444 (731)
T KOG0339|consen 369 SRVSYLVLDEADRMFD-MGFEPQVRSIKQHIRP---DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQT 444 (731)
T ss_pred eeeeEEEEechhhhhc-cccHHHHHHHHhhcCC---cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhhe
Confidence 9999999999999998 6999999999999877 88999999999999999999999999999888777778889999
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv 405 (502)
+..|+....|+..+...|.... ..+++|||+.-+..++.++..|.-.+++|..+||+|.|.+|.+++..|+.+...|||
T Consensus 445 V~V~~s~~~Kl~wl~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlv 523 (731)
T KOG0339|consen 445 VSVCPSEEKKLNWLLRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLV 523 (731)
T ss_pred eeeccCcHHHHHHHHHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEE
Confidence 9999999999999988777765 678999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccc
Q 010762 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485 (502)
Q Consensus 406 ~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 485 (502)
+||+++||+|+|.+..|||||+- ++++.|.||+||+||+|.+|.+++++++. |..+...+-+.|...-+.+
T Consensus 524 atDvaargldI~~ikTVvnyD~a--------rdIdththrigrtgRag~kGvayTlvTeK-Da~fAG~LVnnLe~agQnV 594 (731)
T KOG0339|consen 524 ATDVAARGLDIPSIKTVVNYDFA--------RDIDTHTHRIGRTGRAGEKGVAYTLVTEK-DAEFAGHLVNNLEGAGQNV 594 (731)
T ss_pred EeeHhhcCCCccccceeeccccc--------chhHHHHHHhhhcccccccceeeEEechh-hHHHhhHHHHHHhhccccC
Confidence 99999999999999999999999 89999999999999999999999999965 5668889999999999999
Q ss_pred cCCHHHHH
Q 010762 486 RNSDEDFK 493 (502)
Q Consensus 486 ~~~~~~~~ 493 (502)
|..+-++-
T Consensus 595 P~~l~dla 602 (731)
T KOG0339|consen 595 PDELMDLA 602 (731)
T ss_pred ChHHHHHH
Confidence 87777653
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.1e-63 Score=505.63 Aligned_cols=382 Identities=27% Similarity=0.451 Sum_probs=325.5
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC---
Q 010762 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--- 167 (502)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~--- 167 (502)
.|...+.+..+|+++++++.+++.|.+ +||..|||+|.++||.++.| +|++++||||||||++|++|++.++..
T Consensus 112 ~g~~~p~pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g--~dviv~ApTGSGKTlayllPil~~l~~~~~ 188 (518)
T PLN00206 112 KGEAVPPPILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSG--RSLLVSADTGSGKTASFLVPIISRCCTIRS 188 (518)
T ss_pred cCCCCCchhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CCEEEEecCCCCccHHHHHHHHHHHHhhcc
Confidence 466777889999999999999999986 99999999999999999999 999999999999999999999987632
Q ss_pred ----CCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc
Q 010762 168 ----NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243 (502)
Q Consensus 168 ----~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~ 243 (502)
...++++|||+||++||.|+.+.++.+....++...+.+++...... ......+++|+|+||++|.+++....+
T Consensus 189 ~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q--~~~l~~~~~IiV~TPgrL~~~l~~~~~ 266 (518)
T PLN00206 189 GHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ--LYRIQQGVELIVGTPGRLIDLLSKHDI 266 (518)
T ss_pred ccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH--HHHhcCCCCEEEECHHHHHHHHHcCCc
Confidence 23567899999999999999999999988888887777776544322 122334689999999999999998888
Q ss_pred CCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccce
Q 010762 244 GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVK 323 (502)
Q Consensus 244 ~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (502)
.+.++++||+||||+|++ .+|...+..++..+. ++|+++||||++..+..+...++.++..+...........+.
T Consensus 267 ~l~~v~~lViDEad~ml~-~gf~~~i~~i~~~l~----~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~ 341 (518)
T PLN00206 267 ELDNVSVLVLDEVDCMLE-RGFRDQVMQIFQALS----QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVK 341 (518)
T ss_pred cchheeEEEeecHHHHhh-cchHHHHHHHHHhCC----CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCccee
Confidence 899999999999999998 589998888877663 569999999999999998888888887777666555555666
Q ss_pred EEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHHcCCCe
Q 010762 324 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEERDKIVKEFKDGLTQ 402 (502)
Q Consensus 324 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 402 (502)
+....+... .+...+...+........++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+.|+.+
T Consensus 342 q~~~~~~~~-~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ 420 (518)
T PLN00206 342 QLAIWVETK-QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP 420 (518)
T ss_pred EEEEeccch-hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 766666543 344445554444433457899999999999999999975 689999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcc
Q 010762 403 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482 (502)
Q Consensus 403 iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~ 482 (502)
|||||++++||||+|++++||+||+| .++.+|+||+||+||.|..|.+++|+.+ ++...+..+.+.+....
T Consensus 421 ILVaTdvl~rGiDip~v~~VI~~d~P--------~s~~~yihRiGRaGR~g~~G~ai~f~~~-~~~~~~~~l~~~l~~~~ 491 (518)
T PLN00206 421 VIVATGVLGRGVDLLRVRQVIIFDMP--------NTIKEYIHQIGRASRMGEKGTAIVFVNE-EDRNLFPELVALLKSSG 491 (518)
T ss_pred EEEEecHhhccCCcccCCEEEEeCCC--------CCHHHHHHhccccccCCCCeEEEEEEch-hHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999 8999999999999999999999999975 56777888888888777
Q ss_pred ccccCCHHHH
Q 010762 483 TEVRNSDEDF 492 (502)
Q Consensus 483 ~~~~~~~~~~ 492 (502)
..+|+.+.++
T Consensus 492 ~~vp~~l~~~ 501 (518)
T PLN00206 492 AAIPRELANS 501 (518)
T ss_pred CCCCHHHHhC
Confidence 7777665554
No 19
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-64 Score=466.98 Aligned_cols=371 Identities=29% Similarity=0.451 Sum_probs=308.1
Q ss_pred CCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC------CC
Q 010762 95 PYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD------PN 168 (502)
Q Consensus 95 ~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~------~~ 168 (502)
.+.....|.++||++.++..|...+++..||.+|+++||.+|.| +|++|.++||||||++|++|+++.+. ++
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~g--rD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~R 208 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEG--RDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQR 208 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcC--cceEEEcCCCCcccHHHHHHHHHHHHhcCccccc
Confidence 34455689999999999999999999999999999999999999 99999999999999999999999873 34
Q ss_pred CCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-CccCCCc
Q 010762 169 LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSR 247 (502)
Q Consensus 169 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~ 247 (502)
..|+.+|||+||||||.|+++.++++...+...+.+..-|+. .......++..+++|+|+|||||++|+.+ ..+.+++
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGE-kkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGE-KKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeeccc-ccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 568899999999999999999999999887766655544432 22344556778999999999999999988 5678999
Q ss_pred eEEEEEeCchhhhcccCCHHHHHHHHHHhhhc----------CCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccc--
Q 010762 248 LKILVYDEADHMLDEAGFRDDSLRIMKDIERS----------SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-- 315 (502)
Q Consensus 248 ~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~----------~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-- 315 (502)
+++|||||||++++ +||...+..|++.+... +...|.+++|||+++.+..+....+.+|..+..+..
T Consensus 288 LRwlVlDEaDrlle-LGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~ 366 (708)
T KOG0348|consen 288 LRWLVLDEADRLLE-LGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHS 366 (708)
T ss_pred eeEEEecchhHHHh-ccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhh
Confidence 99999999999998 79999999999888331 123689999999999999999888888887772110
Q ss_pred -----------------------ccccccceEEEEecCChHHHHHHHHHHHHHhc--ccCCcEEEEcCChhhHHHHHHHH
Q 010762 316 -----------------------ELSLESVKQYKVYCPDELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKAL 370 (502)
Q Consensus 316 -----------------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~L 370 (502)
...+..+.|.|+.++....-+ .|...|.... ....++|||+.+.+.++.-+..|
T Consensus 367 ~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV-~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 367 QLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLV-ALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred hcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHH-HHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHH
Confidence 122344567777777655433 2333333322 24568999999999999998888
Q ss_pred HhC----------------------CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCC
Q 010762 371 KDF----------------------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428 (502)
Q Consensus 371 ~~~----------------------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p 428 (502)
... +.++.-|||+|.|.+|..++..|...+..||+|||+++||||+|+|++||.||+|
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P 525 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP 525 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC
Confidence 652 3568899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhC
Q 010762 429 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD 479 (502)
Q Consensus 429 ~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~ 479 (502)
.++.+|+||+|||+|+|.+|.+++|+.+.+.. |++.++....
T Consensus 526 --------~s~adylHRvGRTARaG~kG~alLfL~P~Eae-y~~~l~~~~~ 567 (708)
T KOG0348|consen 526 --------FSTADYLHRVGRTARAGEKGEALLFLLPSEAE-YVNYLKKHHI 567 (708)
T ss_pred --------CCHHHHHHHhhhhhhccCCCceEEEecccHHH-HHHHHHhhcc
Confidence 78999999999999999999999999987544 6676665543
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-64 Score=471.58 Aligned_cols=388 Identities=30% Similarity=0.450 Sum_probs=337.5
Q ss_pred cccCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC
Q 010762 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (502)
Q Consensus 89 ~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~ 168 (502)
...|...+.+...|.+-.+...+..++.. .|+..|||+|+.+||.+..| ++++++|+||||||.+|++|++.++...
T Consensus 63 ~~~G~~~p~~i~~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~G--rdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 63 KVSGRDVPPHIPTFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGG--RDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eccCCccCCCcccccccchhHHHhhcccc-ccccCCCcceeeccceeecC--CceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 34566666777799988999999999876 89999999999999999999 9999999999999999999999988433
Q ss_pred C----------CCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHH
Q 010762 169 L----------KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM 238 (502)
Q Consensus 169 ~----------~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l 238 (502)
. ..++++|++|||+||.|++.+.+++.....+.....+++.... ........+|+|+|+|||+|.+++
T Consensus 140 ~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~--~q~~~~~~gcdIlvaTpGrL~d~~ 217 (482)
T KOG0335|consen 140 GPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLG--AQLRFIKRGCDILVATPGRLKDLI 217 (482)
T ss_pred CcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchh--hhhhhhccCccEEEecCchhhhhh
Confidence 2 2589999999999999999999999999888888888884433 344555668999999999999999
Q ss_pred HcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc-CCCeeEEEEeecCChhHHHHHHHHhcC-Cceeeecccc
Q 010762 239 SAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS-SGHCQVLLFSATFNETVKNFVTRIVKD-YNQLFVKKEE 316 (502)
Q Consensus 239 ~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~ 316 (502)
+...+.+.+++++||||||+|++.++|...+..|+...... ..++|+++||||+|..+..++..++.+ +..+.+..-.
T Consensus 218 e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg 297 (482)
T KOG0335|consen 218 ERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG 297 (482)
T ss_pred hcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec
Confidence 99999999999999999999999889999999998877542 347899999999999999988888876 8888888888
Q ss_pred cccccceEEEEecCChHHHHHHHHHHHHHhcc--cCC-----cEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHH
Q 010762 317 LSLESVKQYKVYCPDELAKVMVIRDRIFELGE--KMG-----QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEER 389 (502)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~--~~~-----~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r 389 (502)
....++.|...++.... |...+.+++..... ..+ +++|||.+++.|..++..|...++++..+||..++.+|
T Consensus 298 ~~~~ni~q~i~~V~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 298 STSENITQKILFVNEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred cccccceeEeeeecchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 89999999988887544 44444444443321 233 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHH
Q 010762 390 DKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMI 469 (502)
Q Consensus 390 ~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~ 469 (502)
.+.++.|+.|...+||||++++||||+|+|+|||+||+| .+..+|+||||||||.|+.|.++.|+. ..+..
T Consensus 377 ~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP--------~d~d~YvHRIGRTGR~Gn~G~atsf~n-~~~~~ 447 (482)
T KOG0335|consen 377 EQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMP--------ADIDDYVHRIGRTGRVGNGGRATSFFN-EKNQN 447 (482)
T ss_pred HHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecC--------cchhhHHHhccccccCCCCceeEEEec-cccch
Confidence 999999999999999999999999999999999999999 789999999999999999999999998 55677
Q ss_pred HHHHHHHHhCCccccccCCHHH
Q 010762 470 IMEKIERYFDIKVTEVRNSDED 491 (502)
Q Consensus 470 ~~~~i~~~l~~~~~~~~~~~~~ 491 (502)
..+.+.+.+...-+++|+-+.+
T Consensus 448 i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 448 IAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred hHHHHHHHHHHhcccCcHHHHh
Confidence 7788888887777777765555
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.4e-62 Score=494.35 Aligned_cols=365 Identities=32% Similarity=0.500 Sum_probs=315.9
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+++++++.++++|.+ +||..|||+|.++||.++.| +|++++||||||||++|++|+++++.......++||++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g--~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~ 79 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAG--KDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLC 79 (460)
T ss_pred CCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEe
Confidence 3579999999999999987 99999999999999999999 99999999999999999999999987665667899999
Q ss_pred CcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
||++||.|+.+.++.++... ++.+..++|+.+...+ ......+++|+|+||++|.+++....+.+.++++||+||||
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~--~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQ--IDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHH--HHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 99999999999999987654 5677677766544321 12223568999999999999999888889999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 337 (502)
+|++ .+|...+..++..++. ..|+++||||+++.+..+...++..+..+...... ....+.+.+..+.... +..
T Consensus 158 ~~l~-~g~~~~l~~i~~~~~~---~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~ 231 (460)
T PRK11776 158 RMLD-MGFQDAIDAIIRQAPA---RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLP 231 (460)
T ss_pred HHhC-cCcHHHHHHHHHhCCc---ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHH
Confidence 9997 5899999888888765 77999999999999999999988888877665443 3444667666665544 666
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
.+...+... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 232 ~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 232 ALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIK 309 (460)
T ss_pred HHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchh
Confidence 666644332 457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccc
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 485 (502)
++++||+||+| .++..|+||+||+||+|+.|.+++|+.+ ++...+..+++.++..+...
T Consensus 310 ~v~~VI~~d~p--------~~~~~yiqR~GRtGR~g~~G~ai~l~~~-~e~~~~~~i~~~~~~~~~~~ 368 (460)
T PRK11776 310 ALEAVINYELA--------RDPEVHVHRIGRTGRAGSKGLALSLVAP-EEMQRANAIEDYLGRKLNWE 368 (460)
T ss_pred cCCeEEEecCC--------CCHhHhhhhcccccCCCCcceEEEEEch-hHHHHHHHHHHHhCCCCcee
Confidence 99999999999 7899999999999999999999999985 46777888999998876543
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-62 Score=501.48 Aligned_cols=367 Identities=36% Similarity=0.558 Sum_probs=319.5
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|.+++|++.++++|.+ +||..|||+|.++||.++.| +|+|++||||||||++|++|+++.+......+++||||
T Consensus 5 ~~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g--~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~ 81 (629)
T PRK11634 5 ETTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLA 81 (629)
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 4579999999999999987 99999999999999999999 99999999999999999999999987666778999999
Q ss_pred CcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
||++||.|+++.+..+.... ++.+..++++..... .......+++|+|+||++|.+++....+.+.++++|||||||
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~--q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV--QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH--HHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 99999999999999987665 577777776654322 122233468999999999999999988889999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 337 (502)
.|++ ++|...+..++..++. ..|+++||||+|..+..+...++.++..+.+.........+.+.+..+. ...|..
T Consensus 160 ~ml~-~gf~~di~~Il~~lp~---~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~-~~~k~~ 234 (629)
T PRK11634 160 EMLR-MGFIEDVETIMAQIPE---GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNE 234 (629)
T ss_pred HHhh-cccHHHHHHHHHhCCC---CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec-hhhHHH
Confidence 9997 5899988888888765 7799999999999999999999988888777666656666667666554 334555
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
.+...+.. ....++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 235 ~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip 312 (629)
T PRK11634 235 ALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 312 (629)
T ss_pred HHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcc
Confidence 55554432 2457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
++++|||||+| .+++.|+||+|||||+|+.|.+++|+.+ .+...+..|++.++..++++.
T Consensus 313 ~V~~VI~~d~P--------~~~e~yvqRiGRtGRaGr~G~ai~~v~~-~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 313 RISLVVNYDIP--------MDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred cCCEEEEeCCC--------CCHHHHHHHhccccCCCCcceEEEEech-HHHHHHHHHHHHhCCCcceec
Confidence 99999999999 7899999999999999999999999985 466788999999999887765
No 23
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.5e-65 Score=458.87 Aligned_cols=383 Identities=28% Similarity=0.440 Sum_probs=330.0
Q ss_pred cccCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhcc---
Q 010762 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--- 165 (502)
Q Consensus 89 ~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l--- 165 (502)
...|+..++++.+|.++.++..+++.|.+ .|+..|||+|.+.+|.+|+| +|.|..|-||||||++|.+|++-..
T Consensus 159 ~veGd~ipPPIksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsG--RDmIGIAfTGSGKTlvFvLP~imf~Leq 235 (610)
T KOG0341|consen 159 LVEGDDIPPPIKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPVIMFALEQ 235 (610)
T ss_pred EeeCCCCCCchhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeec--CceeeEEeecCCceEEEeHHHHHHHHHH
Confidence 34688899999999999999999999987 99999999999999999999 9999999999999999999987443
Q ss_pred -----CCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccC------ceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH
Q 010762 166 -----DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG------ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI 234 (502)
Q Consensus 166 -----~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l 234 (502)
-....++..|||||+|+||.|+++.+..+...+. ++....+|+..... .......+.+|+|+|||||
T Consensus 236 E~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~e--ql~~v~~GvHivVATPGRL 313 (610)
T KOG0341|consen 236 EMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVRE--QLDVVRRGVHIVVATPGRL 313 (610)
T ss_pred HhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHH--HHHHHhcCeeEEEcCcchH
Confidence 1245688999999999999999998887765432 34444455543332 2233445789999999999
Q ss_pred HHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecc
Q 010762 235 KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKK 314 (502)
Q Consensus 235 ~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
.+++....+++.-++++++||||+|++ +||.+.+..|+..+.. .+|+++||||+|..++.|++..+-.|..+.+..
T Consensus 314 ~DmL~KK~~sLd~CRyL~lDEADRmiD-mGFEddir~iF~~FK~---QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGR 389 (610)
T KOG0341|consen 314 MDMLAKKIMSLDACRYLTLDEADRMID-MGFEDDIRTIFSFFKG---QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGR 389 (610)
T ss_pred HHHHHHhhccHHHHHHhhhhhHHHHhh-ccchhhHHHHHHHHhh---hhheeeeeccccHHHHHHHHhhcccceEEeccc
Confidence 999999999999999999999999998 7999999999999987 779999999999999999999999999998888
Q ss_pred cccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHH
Q 010762 315 EELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~ 394 (502)
.....-++.|.+-++..+ .|+..+++-+ .....++||||..+..+..++++|--.|+.++.+||+..|++|...++
T Consensus 390 AGAAsldViQevEyVkqE-aKiVylLeCL---QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 390 AGAASLDVIQEVEYVKQE-AKIVYLLECL---QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred ccccchhHHHHHHHHHhh-hhhhhHHHHh---ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHH
Confidence 777666666555444433 3444443323 335679999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHH
Q 010762 395 EFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI 474 (502)
Q Consensus 395 ~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i 474 (502)
.|+.|+-+||||||+++.|+|+|++.||||||+| ..++.|+||+|||||.|+.|.+.+|+....+..++-++
T Consensus 466 afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP--------~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDL 537 (610)
T KOG0341|consen 466 AFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP--------EEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDL 537 (610)
T ss_pred HHhcCCCceEEEecchhccCCCccchhhccCCCh--------HHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHhCCccccccCCHHHH
Q 010762 475 ERYFDIKVTEVRNSDEDF 492 (502)
Q Consensus 475 ~~~l~~~~~~~~~~~~~~ 492 (502)
...+.-.-+++|+-+..+
T Consensus 538 K~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 538 KHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred HHHHHHhhccCCHHHHHh
Confidence 988877777776555444
No 24
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.3e-62 Score=489.26 Aligned_cols=364 Identities=31% Similarity=0.489 Sum_probs=313.3
Q ss_pred CccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC------CCCeE
Q 010762 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL------KAPQA 174 (502)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~------~~~~~ 174 (502)
+|++++|++.+++.|.+ +||..|||+|.++||.++.| +|++++||||||||++|++|+++.+.... ...++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g--~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEG--RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceE
Confidence 69999999999999987 99999999999999999999 99999999999999999999999875321 23479
Q ss_pred EEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEe
Q 010762 175 LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (502)
Q Consensus 175 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlD 254 (502)
|||+||++||.|+.+.+..+....++.+..++++....... ......++|+|+||++|++++....+.+.++++||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~--~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM--MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHH--HHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEee
Confidence 99999999999999999999988888887787776543221 1233468999999999999998888889999999999
Q ss_pred CchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHH
Q 010762 255 EADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA 334 (502)
Q Consensus 255 Eah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (502)
|||+|++ .+|...+..++..++. ..|+++||||++..+..+...++.++..+.+.........+.+++..+.. ..
T Consensus 157 Eah~ll~-~~~~~~i~~il~~l~~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~ 231 (456)
T PRK10590 157 EADRMLD-MGFIHDIRRVLAKLPA---KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KR 231 (456)
T ss_pred cHHHHhc-cccHHHHHHHHHhCCc---cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HH
Confidence 9999998 4888888888777655 67999999999999999998998888877766655555666666665543 33
Q ss_pred HHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCC
Q 010762 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGF 414 (502)
Q Consensus 335 k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gl 414 (502)
+...+.. +... ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 232 k~~~l~~-l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGi 309 (456)
T PRK10590 232 KRELLSQ-MIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGL 309 (456)
T ss_pred HHHHHHH-HHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCC
Confidence 4444433 2222 2457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccc
Q 010762 415 DQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485 (502)
Q Consensus 415 di~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 485 (502)
|+|++++||||++| .++.+|+||+||+||+|..|.+++|+.. ++...+..+++.++.+++.+
T Consensus 310 Dip~v~~VI~~~~P--------~~~~~yvqR~GRaGR~g~~G~ai~l~~~-~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 310 DIEELPHVVNYELP--------NVPEDYVHRIGRTGRAAATGEALSLVCV-DEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred CcccCCEEEEeCCC--------CCHHHhhhhccccccCCCCeeEEEEecH-HHHHHHHHHHHHhcCCCccc
Confidence 99999999999999 7899999999999999999999999985 57778899999999888654
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-62 Score=494.68 Aligned_cols=368 Identities=29% Similarity=0.480 Sum_probs=314.7
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC-------CCCC
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-------LKAP 172 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~-------~~~~ 172 (502)
.+|++++|++.++++|.+ +||..|||+|.++||.++.| +|++++||||||||++|++|+++++... ...+
T Consensus 9 ~~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G--~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ 85 (572)
T PRK04537 9 LTFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPG--GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDP 85 (572)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCc
Confidence 479999999999999987 99999999999999999999 9999999999999999999999887432 1247
Q ss_pred eEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-ccCCCceEEE
Q 010762 173 QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKIL 251 (502)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~l 251 (502)
++|||+||++||.|+++.+.+++...++.+..++++...... ......+++|+|+||++|++++... .+.+..+++|
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q--~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ--RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH--HHHHhCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 899999999999999999999999888888888887654322 1222346899999999999998764 4678899999
Q ss_pred EEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCC
Q 010762 252 VYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331 (502)
Q Consensus 252 VlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (502)
||||||+|++ .+|...+..++..++... .+|+++||||++..+..+...++..+..+...........+.+.+....
T Consensus 164 ViDEAh~lld-~gf~~~i~~il~~lp~~~-~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~- 240 (572)
T PRK04537 164 VLDEADRMFD-LGFIKDIRFLLRRMPERG-TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA- 240 (572)
T ss_pred EecCHHHHhh-cchHHHHHHHHHhccccc-CceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC-
Confidence 9999999997 589988888888776432 5799999999999999988888888777766555555555666655543
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccc
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 411 (502)
...+...+...+.. ....++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 241 ~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~a 318 (572)
T PRK04537 241 DEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAA 318 (572)
T ss_pred HHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhh
Confidence 44555555553332 2567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
+|||+|++++|||||+| .++..|+||+||+||.|+.|.+++|+.+ .+...+..++++++..+...+
T Consensus 319 rGIDip~V~~VInyd~P--------~s~~~yvqRiGRaGR~G~~G~ai~~~~~-~~~~~l~~i~~~~~~~~~~~~ 384 (572)
T PRK04537 319 RGLHIDGVKYVYNYDLP--------FDAEDYVHRIGRTARLGEEGDAISFACE-RYAMSLPDIEAYIEQKIPVEP 384 (572)
T ss_pred cCCCccCCCEEEEcCCC--------CCHHHHhhhhcccccCCCCceEEEEecH-HHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999999 7899999999999999999999999985 466778999999988876553
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.7e-61 Score=480.58 Aligned_cols=364 Identities=31% Similarity=0.514 Sum_probs=314.8
Q ss_pred CccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC----CCCCCeEEE
Q 010762 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP----NLKAPQALC 176 (502)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~----~~~~~~~li 176 (502)
+|+++++++.+++.|.. +||..|+++|.++||.++.| +|++++||||+|||++|++|+++++.. ....+++||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g--~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~li 78 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDG--RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILI 78 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEE
Confidence 69999999999999987 99999999999999999999 999999999999999999999988743 223468999
Q ss_pred ecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCc
Q 010762 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (502)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEa 256 (502)
++||++||.|+++.+..++...++.+..+.|+...... .......++|+|+||++|++++....+.+.++++||+|||
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~--~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEa 156 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNH--AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEA 156 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECH
Confidence 99999999999999999999888888877776543321 2223346899999999999999988888999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh-hHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHH
Q 010762 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE-TVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 335 (502)
Q Consensus 257 h~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 335 (502)
|+|++ .+|...+..+...+.. ..|+++||||++. .+..+...++..+..+...........+.+++..+.....+
T Consensus 157 h~~l~-~~~~~~~~~i~~~~~~---~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k 232 (434)
T PRK11192 157 DRMLD-MGFAQDIETIAAETRW---RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHK 232 (434)
T ss_pred HHHhC-CCcHHHHHHHHHhCcc---ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHH
Confidence 99997 5898888888776654 6799999999985 57777777777777776666555566677777777766667
Q ss_pred HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCC
Q 010762 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 415 (502)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gld 415 (502)
...+...+.. ....++||||++++.|+.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|+|
T Consensus 233 ~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiD 310 (434)
T PRK11192 233 TALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGID 310 (434)
T ss_pred HHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCcc
Confidence 7666654332 24679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccc
Q 010762 416 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTE 484 (502)
Q Consensus 416 i~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 484 (502)
+|++++|||||+| .|...|+||+||+||+|..|.+++|+.. .|...+..+++++...+.+
T Consensus 311 ip~v~~VI~~d~p--------~s~~~yiqr~GR~gR~g~~g~ai~l~~~-~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 311 IDDVSHVINFDMP--------RSADTYLHRIGRTGRAGRKGTAISLVEA-HDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCCEEEEECCC--------CCHHHHhhcccccccCCCCceEEEEecH-HHHHHHHHHHHHHhccccc
Confidence 9999999999999 7899999999999999999999999874 5777888999988777644
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=441.09 Aligned_cols=361 Identities=27% Similarity=0.460 Sum_probs=307.2
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC------CCCCCCe
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD------PNLKAPQ 173 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~------~~~~~~~ 173 (502)
.+|++++|.+.+++++.+ .||..||-+|..+||.+|+| +|+++.|.||||||.+|++|+++.+. ....++.
T Consensus 19 ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEg--KDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEG--KDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcC--cceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccce
Confidence 589999999999999987 99999999999999999999 99999999999999999999999873 2345778
Q ss_pred EEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc-cCCCceEEEE
Q 010762 174 ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILV 252 (502)
Q Consensus 174 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~lV 252 (502)
++|++||+|||+|++..+.++...++..+..+....+.+.......+...++|+|+||++++.++..+. ..+..++++|
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 999999999999999999988776653222222221111111223444568999999999999999877 5788999999
Q ss_pred EeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccc-cccceEEEEecCC
Q 010762 253 YDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELS-LESVKQYKVYCPD 331 (502)
Q Consensus 253 lDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 331 (502)
+||||.++. .||.+.+..+...+++ ..|.++||||++.++..+-..++.+|..+.....+.. ...+.|+.+.|.
T Consensus 176 vDEADLlls-fGYeedlk~l~~~LPr---~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs- 250 (569)
T KOG0346|consen 176 VDEADLLLS-FGYEEDLKKLRSHLPR---IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS- 250 (569)
T ss_pred echhhhhhh-cccHHHHHHHHHhCCc---hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-
Confidence 999999997 7999999999999987 7899999999999999999999999988877666554 466888888888
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC---
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD--- 408 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~--- 408 (502)
+..|...+.. +.++.--.+++|||+|+++.|.++.-.|...|++.++++|.|+...|..++++|+.|-++|+||||
T Consensus 251 e~DKflllya-llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~ 329 (569)
T KOG0346|consen 251 EEDKFLLLYA-LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSA 329 (569)
T ss_pred cchhHHHHHH-HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCcc
Confidence 5556655555 344433678999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------ccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc
Q 010762 409 --------------------------------VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456 (502)
Q Consensus 409 --------------------------------~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g 456 (502)
-.+||||+.+|.+|+|||+| .++..|+||+|||+|++++|
T Consensus 330 ~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P--------~t~~sYIHRvGRTaRg~n~G 401 (569)
T KOG0346|consen 330 DGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFP--------ETVTSYIHRVGRTARGNNKG 401 (569)
T ss_pred chhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCC--------CchHHHHHhccccccCCCCC
Confidence 24799999999999999999 89999999999999999999
Q ss_pred eEEEEeeCCccHHHHHHHHHHh
Q 010762 457 VVFNLLMDGDDMIIMEKIERYF 478 (502)
Q Consensus 457 ~~~~~~~~~~~~~~~~~i~~~l 478 (502)
.+++|+.+.+. .....++..+
T Consensus 402 talSfv~P~e~-~g~~~le~~~ 422 (569)
T KOG0346|consen 402 TALSFVSPKEE-FGKESLESIL 422 (569)
T ss_pred ceEEEecchHH-hhhhHHHHHH
Confidence 99999997644 3334555544
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-59 Score=472.43 Aligned_cols=369 Identities=27% Similarity=0.453 Sum_probs=314.2
Q ss_pred CCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC-------
Q 010762 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL------- 169 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~------- 169 (502)
.....|.++++++.++++|.+ +||..||++|.++|+.++.| +|+++++|||||||++|++|++..+....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G--~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~ 160 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAG--HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYM 160 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhcCccccccc
Confidence 345689999999999999987 99999999999999999999 99999999999999999999999875432
Q ss_pred CCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceE
Q 010762 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLK 249 (502)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 249 (502)
..+++|||+||++||.|+++.++.+....++.+..++++...... ........++|+|+||++|++++......+.+++
T Consensus 161 ~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~-~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 161 GEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ-LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH-HHHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 146899999999999999999999988888888887776543321 1122234589999999999999988888899999
Q ss_pred EEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEec
Q 010762 250 ILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 329 (502)
Q Consensus 250 ~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (502)
+|||||||++++ .+|...+..++..+.... ..|++++|||++..+..+...++.++..+.+.........+.+.+..+
T Consensus 240 ~lViDEah~l~~-~~~~~~l~~i~~~~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 317 (475)
T PRK01297 240 VMVLDEADRMLD-MGFIPQVRQIIRQTPRKE-ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAV 317 (475)
T ss_pred eEEechHHHHHh-cccHHHHHHHHHhCCCCC-CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEe
Confidence 999999999997 488888888887765422 569999999999999999888888887776655555555555555544
Q ss_pred CChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc
Q 010762 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409 (502)
Q Consensus 330 ~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 409 (502)
.. ..+...+...+.. ....++||||+++..++.++..|...++.+..+||++++.+|.++++.|++|+++|||||++
T Consensus 318 ~~-~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~ 394 (475)
T PRK01297 318 AG-SDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDV 394 (475)
T ss_pred cc-hhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 43 3344444443332 24568999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccc
Q 010762 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~ 483 (502)
+++|||+|++++||+|++| .|+..|+||+||+||.|+.|.+++|+.+ +|..++..++++++.++.
T Consensus 395 l~~GIDi~~v~~VI~~~~P--------~s~~~y~Qr~GRaGR~g~~g~~i~~~~~-~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 395 AGRGIHIDGISHVINFTLP--------EDPDDYVHRIGRTGRAGASGVSISFAGE-DDAFQLPEIEELLGRKIS 459 (475)
T ss_pred cccCCcccCCCEEEEeCCC--------CCHHHHHHhhCccCCCCCCceEEEEecH-HHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999 7899999999999999999999999985 578889999999999984
No 29
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-60 Score=429.78 Aligned_cols=371 Identities=36% Similarity=0.647 Sum_probs=339.6
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|++++|+++|+++++. +||..|+.+|+.||+.+..| .|+++++++|+|||.+|.+++++++........++++.
T Consensus 25 vdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G--~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalila 101 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKG--HDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILA 101 (397)
T ss_pred hhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccC--CceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhc
Confidence 3489999999999999997 99999999999999999999 99999999999999999999999998888888999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
|+|+||.|+......++...+..+...+++....... .......++|+|+|||++.+++....+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~-~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRRED-QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhh-hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 9999999999999999999998888777766544322 223344589999999999999999988888899999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
|+. .||.+.+..+.+.++. +.|++++|||+|.++......++.+|..+.+...+.+...+.|+++....+. |+..
T Consensus 181 mLs-~gfkdqI~~if~~lp~---~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~ 255 (397)
T KOG0327|consen 181 MLS-RGFKDQIYDIFQELPS---DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDT 255 (397)
T ss_pred hhc-cchHHHHHHHHHHcCc---chhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccH
Confidence 998 6999999999999887 7799999999999999999999999999999999999999999999988766 7777
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~ 418 (502)
+.++ .+ .....+||||+++.+..+...|...++.+..+|+.|.+.+|..++..|+.|..+|||+|+.++||+|+..
T Consensus 256 l~dl-~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~ 331 (397)
T KOG0327|consen 256 LCDL-YR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQ 331 (397)
T ss_pred HHHH-HH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhh
Confidence 7663 33 5577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHH
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDED 491 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 491 (502)
+..||||++| ...++|+||+||+||.|++|.++.++.+ .+...++.++++++..|+++|.+..+
T Consensus 332 ~slvinydlP--------~~~~~yihR~gr~gr~grkg~~in~v~~-~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 332 VSLVVNYDLP--------ARKENYIHRIGRAGRFGRKGVAINFVTE-EDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred cceeeeeccc--------cchhhhhhhcccccccCCCceeeeeehH-hhHHHHHhHHHhcCCcceecccchhh
Confidence 9999999999 7899999999999999999999999984 57788999999999999999866544
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.5e-59 Score=462.28 Aligned_cols=369 Identities=37% Similarity=0.605 Sum_probs=316.8
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+++++++.+++++.+ +||..|+|+|.++|+.++.| +|++++||||||||++|++|++..+.....+.++||++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~--~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~ 103 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDG--YDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILA 103 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEEC
Confidence 5689999999999999987 99999999999999999999 99999999999999999999999887666677999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
|+++|+.|+.+.+..++...++......++..... .......+++|+|+||++|.+++......+.++++||+||||+
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRD--DINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH--HHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999988776666655555543221 1122233579999999999999988888899999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
+.+ .+|...+..++..+.. ..|++++|||++..+..+...++..+..+...........+.+++..+.....+...
T Consensus 182 ~~~-~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 182 MLS-RGFKGQIYDVFKKLPP---DVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred HHh-cchHHHHHHHHhhCCC---CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHH
Confidence 987 4788777777766644 789999999999998888888888777776666566667777777777665555555
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~ 418 (502)
+...+... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+
T Consensus 258 l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~ 335 (401)
T PTZ00424 258 LCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQ 335 (401)
T ss_pred HHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCccc
Confidence 55433222 4578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccC
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRN 487 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 487 (502)
+++||+||+| .|...|+||+||+||.|+.|.|++|+.+ ++...+..+++.+...+++++.
T Consensus 336 v~~VI~~~~p--------~s~~~y~qr~GRagR~g~~G~~i~l~~~-~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 336 VSLVINYDLP--------ASPENYIHRIGRSGRFGRKGVAINFVTP-DDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred CCEEEEECCC--------CCHHHEeecccccccCCCCceEEEEEcH-HHHHHHHHHHHHHCCcccccCc
Confidence 9999999999 7899999999999999999999999874 5778889999999999988763
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-59 Score=469.36 Aligned_cols=384 Identities=31% Similarity=0.509 Sum_probs=341.8
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC----
Q 010762 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP---- 167 (502)
Q Consensus 92 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~---- 167 (502)
+...+.++++|...|++..++..+++ +||..|+|||.+|||+|+.| +|||.+|.||||||++|++|++.++..
T Consensus 357 g~~~pkpv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsG--rdvIgvakTgSGKT~af~LPmirhi~dQr~~ 433 (997)
T KOG0334|consen 357 GKECPKPVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSG--RDVIGVAKTGSGKTLAFLLPMIRHIKDQRPL 433 (997)
T ss_pred cCCCCcccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccC--cceEEeeccCCccchhhhcchhhhhhcCCCh
Confidence 44566789999999999999999965 99999999999999999999 999999999999999999999987743
Q ss_pred -CCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc---
Q 010762 168 -NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL--- 243 (502)
Q Consensus 168 -~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--- 243 (502)
...||.+||++|||+|+.|+.+++++|...+++.+.|++++.....+. ..+..++.|+|||||++.+++..+..
T Consensus 434 ~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qi--aelkRg~eIvV~tpGRmiD~l~~n~grvt 511 (997)
T KOG0334|consen 434 EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQI--AELKRGAEIVVCTPGRMIDILCANSGRVT 511 (997)
T ss_pred hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHH--HHHhcCCceEEeccchhhhhHhhcCCccc
Confidence 346899999999999999999999999999999999999987655422 22334589999999999999977554
Q ss_pred CCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccce
Q 010762 244 GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVK 323 (502)
Q Consensus 244 ~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (502)
++.++.+||+||||+|++ ++|.++...|++.++. .+|+++||||+|..+..+....+..|..+.+.....-...+.
T Consensus 512 nlrR~t~lv~deaDrmfd-mgfePq~~~Ii~nlrp---drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~ 587 (997)
T KOG0334|consen 512 NLRRVTYLVLDEADRMFD-MGFEPQITRILQNLRP---DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVT 587 (997)
T ss_pred cccccceeeechhhhhhe-eccCcccchHHhhcch---hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccce
Confidence 455566999999999995 7999999888888855 889999999999999999999999999988888777788899
Q ss_pred EEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeE
Q 010762 324 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (502)
Q Consensus 324 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~i 403 (502)
+.+..+..+..|...+..+|.... ..+++||||.++..|..+.+.|.+.|+.|..+||+.++.+|..+++.|+++.+.+
T Consensus 588 q~v~V~~~e~eKf~kL~eLl~e~~-e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~L 666 (997)
T KOG0334|consen 588 QVVRVCAIENEKFLKLLELLGERY-EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNL 666 (997)
T ss_pred EEEEEecCchHHHHHHHHHHHHHh-hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceE
Confidence 999999988889998888666555 5899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccc
Q 010762 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (502)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~ 483 (502)
||||++++||||++.+..|||||+| ...+.|+||+|||||+|+.|.|++|+.+ ++..+...|.+.+...-.
T Consensus 667 LvaTsvvarGLdv~~l~Lvvnyd~p--------nh~edyvhR~gRTgragrkg~AvtFi~p-~q~~~a~dl~~al~~~~~ 737 (997)
T KOG0334|consen 667 LVATSVVARGLDVKELILVVNYDFP--------NHYEDYVHRVGRTGRAGRKGAAVTFITP-DQLKYAGDLCKALELSKQ 737 (997)
T ss_pred EEehhhhhcccccccceEEEEcccc--------hhHHHHHHHhcccccCCccceeEEEeCh-HHhhhHHHHHHHHHhccC
Confidence 9999999999999999999999999 7788899999999999999999999997 778888999999966666
Q ss_pred cccCCHHHHHH
Q 010762 484 EVRNSDEDFKA 494 (502)
Q Consensus 484 ~~~~~~~~~~~ 494 (502)
..|.++..+..
T Consensus 738 ~~P~~l~~l~~ 748 (997)
T KOG0334|consen 738 PVPKLLQALSE 748 (997)
T ss_pred CCchHHHHHHH
Confidence 66655555533
No 32
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-57 Score=421.93 Aligned_cols=373 Identities=26% Similarity=0.397 Sum_probs=284.6
Q ss_pred CccCCCCCHHHHHH----------HHhhCCCCCCcHHHHhhhhhhcCC-------CCccEEEECcCCCcchhHhHHHHHh
Q 010762 101 TFEDLNLSPELLKG----------LYVEMKFQKPSKIQAISLPMILTP-------PYRNLIAQARNGSGKTTCFVLGMLS 163 (502)
Q Consensus 101 ~f~~~~l~~~l~~~----------l~~~~g~~~p~~~Q~~~i~~il~~-------~~~~~lv~a~TGsGKTl~~l~~il~ 163 (502)
-|+.++++..+... +.+ +++...+|+|..++|.++.. ..+|++|.||||||||++|.+||++
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 35666665554443 665 99999999999999999542 1589999999999999999999999
Q ss_pred ccCCC-CCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCccc---ccCCCCCCCeEEEeCchHHHHHHH
Q 010762 164 RVDPN-LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP---ISKRPPVTAQVVIGTPGTIKKWMS 239 (502)
Q Consensus 164 ~l~~~-~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Ilv~Tp~~l~~~l~ 239 (502)
.+..+ .+..+++||+||++|+.|+++.|.+++...++.+..+.+..+..... .........||+|+|||||.+|+.
T Consensus 207 ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 207 LLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 99765 45568999999999999999999999999999865555544332211 111112245999999999999999
Q ss_pred c-CccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc-------------------------------CCCeeEEE
Q 010762 240 A-KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS-------------------------------SGHCQVLL 287 (502)
Q Consensus 240 ~-~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~-------------------------------~~~~q~v~ 287 (502)
+ ..+++.+++++|+||||+|++. .|..++..++..+... .+..+.++
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~q-sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLDQ-SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred CCCCcchhhceEEEechHHHHHHH-HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 5 6789999999999999999985 6888777776555332 11235788
Q ss_pred EeecCChhHHHHHHHHhcCCceeeec----ccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhH
Q 010762 288 FSATFNETVKNFVTRIVKDYNQLFVK----KEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSA 363 (502)
Q Consensus 288 ~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~ 363 (502)
+|||++..-..+..--+..|....+. .....+..+.+.++.+.... +...+...+.. ....++|+|+++...+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~-kpl~~~~lI~~--~k~~r~lcf~~S~~sa 442 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKF-KPLAVYALITS--NKLNRTLCFVNSVSSA 442 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccccc-chHhHHHHHHH--hhcceEEEEecchHHH
Confidence 89998876666555555556444333 22333445555555554432 22222222222 2678999999999999
Q ss_pred HHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCc
Q 010762 364 SALHKALK----DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDC 439 (502)
Q Consensus 364 ~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~ 439 (502)
.+++..|+ ..++++..+.|+++.+.|.+.+++|..|.+.+|||+|+++||+|+.+++.|||||+| .+.
T Consensus 443 ~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P--------~~~ 514 (620)
T KOG0350|consen 443 NRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPP--------ASD 514 (620)
T ss_pred HHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCC--------chh
Confidence 99999887 346778889999999999999999999999999999999999999999999999999 899
Q ss_pred cchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHh---CCcccccc
Q 010762 440 EVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYF---DIKVTEVR 486 (502)
Q Consensus 440 ~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l---~~~~~~~~ 486 (502)
.+|+||+|||+|+|+.|.|+++++..+...+.+.+++.. +.++..++
T Consensus 515 ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~~e 564 (620)
T KOG0350|consen 515 KTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQPIE 564 (620)
T ss_pred hHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcceeecC
Confidence 999999999999999999999999776655555554443 34444443
No 33
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-56 Score=425.34 Aligned_cols=382 Identities=30% Similarity=0.419 Sum_probs=327.7
Q ss_pred ccccCCCCCCCCCCccC----CCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHh
Q 010762 88 TVTTGDTPYTSATTFED----LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLS 163 (502)
Q Consensus 88 ~~~~~~~~~~~~~~f~~----~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~ 163 (502)
....|...+.+..+|.+ +.+++.++..+.. .+|..|+|+|++++|.++.+ ++++.|||||||||++|.+|++.
T Consensus 120 ~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~--r~~lAcapTGsgKtlaf~~Pil~ 196 (593)
T KOG0344|consen 120 INVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEK--RDVLACAPTGSGKTLAFNLPILQ 196 (593)
T ss_pred eeccCCCCCCccccccccchhhhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcc--cceEEeccCCCcchhhhhhHHHH
Confidence 34467777788889987 5789999999986 99999999999999999999 99999999999999999999999
Q ss_pred ccCCC-----CCCCeEEEecCcHHHHHHHHHHHHHhh--cccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHH
Q 010762 164 RVDPN-----LKAPQALCICPTRELAIQNLEVLRKMG--KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKK 236 (502)
Q Consensus 164 ~l~~~-----~~~~~~lil~Pt~~La~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~ 236 (502)
++... ..+.+++|+.|+|+||.|++..+.++. ...+............ .+.........++|+|+||-++..
T Consensus 197 ~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~-~qk~a~~~~~k~dili~TP~ri~~ 275 (593)
T KOG0344|consen 197 HLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYP-SQKPAFLSDEKYDILISTPMRIVG 275 (593)
T ss_pred HHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccch-hhccchhHHHHHHHHhcCHHHHHH
Confidence 98432 356789999999999999999999998 4444433222211111 111112223357999999999999
Q ss_pred HHHcCc--cCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecc
Q 010762 237 WMSAKK--LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKK 314 (502)
Q Consensus 237 ~l~~~~--~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
++.... +.+..+.++|+||||++++...|..++..|+..+.. +...+-+||||++..+++++.........+.++.
T Consensus 276 ~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s--~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~ 353 (593)
T KOG0344|consen 276 LLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS--PDIRVALFSATISVYVEEWAELIKSDLKRVIVGL 353 (593)
T ss_pred HhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC--cchhhhhhhccccHHHHHHHHHhhccceeEEEec
Confidence 998865 678999999999999999854899999999988855 5778899999999999999999999999999999
Q ss_pred cccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHH-HhCCCcEEEecCCCCHHHHHHHH
Q 010762 315 EELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKAL-KDFGYEVTTIMGATIQEERDKIV 393 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L-~~~~~~~~~l~~~~~~~~r~~~~ 393 (502)
.+.....+.|..++|..+..|...+.+.+... -..++|||+++.+.|..|+..| .-.++++..+||..++.+|..++
T Consensus 354 ~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 354 RNSANETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred chhHhhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHH
Confidence 99989999999999999999999988866554 4678999999999999999999 66789999999999999999999
Q ss_pred HHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHH
Q 010762 394 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEK 473 (502)
Q Consensus 394 ~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 473 (502)
++|+.|+++|||||++++||+|+.+++.|||||+| .+...|+||+||+||+|+.|++|+||++ +|..+++.
T Consensus 432 ~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p--------~s~~syihrIGRtgRag~~g~Aitfytd-~d~~~ir~ 502 (593)
T KOG0344|consen 432 ERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFP--------QSDLSYIHRIGRTGRAGRSGKAITFYTD-QDMPRIRS 502 (593)
T ss_pred HHHhccCeeEEEehhhhhccccccCcceEEecCCC--------chhHHHHHHhhccCCCCCCcceEEEecc-ccchhhhh
Confidence 99999999999999999999999999999999999 7888999999999999999999999996 57777787
Q ss_pred HHHHhCCcccccc
Q 010762 474 IERYFDIKVTEVR 486 (502)
Q Consensus 474 i~~~l~~~~~~~~ 486 (502)
+........-++|
T Consensus 503 iae~~~~sG~evp 515 (593)
T KOG0344|consen 503 IAEVMEQSGCEVP 515 (593)
T ss_pred HHHHHHHcCCcch
Confidence 7777755544444
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-56 Score=426.60 Aligned_cols=353 Identities=33% Similarity=0.504 Sum_probs=317.9
Q ss_pred CCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEE
Q 010762 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~li 176 (502)
.-...|+++-|..+++.+|+. .+|..||++|..|||+++.+ .|+||+|..|+|||++|.+.+++.+......++++|
T Consensus 22 ~~~~~fe~l~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~k--mDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~I 98 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRR-NAFALPTKIQAAAIPAIFSK--MDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVI 98 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHh-hcccCCCchhhhhhhhhhcc--cceEEEecCCCCceEEEEeeeehhcCcccCcceeEE
Confidence 345579999999999999987 89999999999999999999 999999999999999999999999998888999999
Q ss_pred ecCcHHHHHHHHHHHHHhhcc-cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeC
Q 010762 177 ICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (502)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDE 255 (502)
|+|||++|.|+.+.+.+++.. .+.....++||.... ......+.++|+|+||||+.+++..+.++...++++||||
T Consensus 99 v~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~---~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 99 VTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHK---LDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred EecchhhhhHHHHHHHHhcccccCcceEEEecCchhh---hhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 999999999999999998874 567777888876543 2333445689999999999999999999999999999999
Q ss_pred chhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChH--
Q 010762 256 ADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL-- 333 (502)
Q Consensus 256 ah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 333 (502)
||.|.+...|.+.+..|+..++. .+|+++||||.|..+.+.+..++.+|..+........+-++.|++...+...
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~---~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nns 252 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQ---IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNS 252 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcch---hheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcch
Confidence 99999977899999999999988 7799999999999999999999999999999999999999999988766542
Q ss_pred -----HHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC
Q 010762 334 -----AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 408 (502)
Q Consensus 334 -----~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~ 408 (502)
.|+..|.+.+ ... +....||||+....|+-++.+|...|+.|.++.|.|+|.+|..+++.++.-.++|||+||
T Consensus 253 veemrlklq~L~~vf-~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVF-KSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred HHHHHHHHHHHHHHH-hhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc
Confidence 2444444422 222 567789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccH
Q 010762 409 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 468 (502)
Q Consensus 409 ~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~ 468 (502)
..+||||-++++.|||.|+| .+.++|.|||||+||.|..|.+++|+.++++.
T Consensus 331 LtaRGIDa~~vNLVVNiD~p--------~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~ 382 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAP--------ADEETYFHRIGRAGRFGAHGAAVTLLEDEREL 382 (980)
T ss_pred hhhccCCccccceEEecCCC--------cchHHHHHHhhhcccccccceeEEEeccchhh
Confidence 99999999999999999999 88999999999999999999999999887663
No 35
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-56 Score=402.99 Aligned_cols=367 Identities=29% Similarity=0.439 Sum_probs=322.8
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC-CCCCeEEEe
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-LKAPQALCI 177 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~-~~~~~~lil 177 (502)
.-+|.++||+..+++++.+ .||..|||+|++.||.+|.| +|++..|-||||||.||++|+++++... ..+.+++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~k-kg~~~ptpiqRKTipliLe~--~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralil 96 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEG--RDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALIL 96 (529)
T ss_pred CCCccccCCCHHHHHHHHH-hhcCCCCchhcccccceeec--cccceeeecCCcchhhHHHHHHHHHhhccccccceeec
Confidence 4579999999999999997 89999999999999999999 9999999999999999999999998643 356699999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+||++|+.|+.+.++.++..++++..+.+++.+... ....+..++|||++||+++.++...-.+.++.+.+||+||||
T Consensus 97 sptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~ee--qf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 97 SPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEE--QFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred cCcHHHHHHHHHHHHHhccccchhhhhhcccchHHH--HHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 999999999999999999999999888888765443 334455578999999999998887777889999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 337 (502)
+++. +||.+++.+++..++. .+|+++||||+|..+.++.+.-+..|..+.+..+......++..+..+. ...|..
T Consensus 175 rlfe-mgfqeql~e~l~rl~~---~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~-~a~K~a 249 (529)
T KOG0337|consen 175 RLFE-MGFQEQLHEILSRLPE---SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVR-KAEKEA 249 (529)
T ss_pred HHHh-hhhHHHHHHHHHhCCC---cceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeec-cHHHHH
Confidence 9997 6999999999999877 6699999999999999999999999988887666655555555555554 445666
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
.|+..+.... ...+++|||.+...++.+...|...|+.+..++|.|.+..|..-+..|+.++..+||.||+++||+|+|
T Consensus 250 aLl~il~~~~-~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dip 328 (529)
T KOG0337|consen 250 ALLSILGGRI-KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIP 328 (529)
T ss_pred HHHHHHhccc-cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCc
Confidence 6665444443 356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccc
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 485 (502)
..+.|||||+| .+...|+||+||++|+|+.|.+|.|+.+ ++..++-++.-++++.+.-.
T Consensus 329 lldnvinyd~p--------~~~klFvhRVgr~aragrtg~aYs~V~~-~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 329 LLDNVINYDFP--------PDDKLFVHRVGRVARAGRTGRAYSLVAS-TDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred cccccccccCC--------CCCceEEEEecchhhccccceEEEEEec-ccchhhhhhhhhcCCceeec
Confidence 99999999999 7788899999999999999999999995 46677888999998876443
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.4e-54 Score=446.23 Aligned_cols=355 Identities=19% Similarity=0.282 Sum_probs=276.1
Q ss_pred CCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHH
Q 010762 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (502)
Q Consensus 106 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 185 (502)
.+++.+.+.|.+ +||..||++|.++||.++.| +|+++++|||||||++|++|+++.+... .+.++|||+|||+|+.
T Consensus 20 ~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G--~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEA-AGIHRPWQHQARAAELAHAG--RHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCC--CCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHH
Confidence 378999999986 99999999999999999999 9999999999999999999999998653 4578999999999999
Q ss_pred HHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC----ccCCCceEEEEEeCchhhhc
Q 010762 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK----KLGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 186 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~~~~~~lVlDEah~l~~ 261 (502)
|+...++.++ ..++++....|+...... .....+++|+|+||++|...+... ...++++++||+||||.|.+
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r---~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTPTEER---RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCCHHHH---HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 9999999987 445666555554432211 222335899999999986433211 12378899999999999975
Q ss_pred ccCCHHHHHHHHHHhhh----cCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCC------
Q 010762 262 EAGFRDDSLRIMKDIER----SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD------ 331 (502)
Q Consensus 262 ~~~~~~~~~~i~~~l~~----~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 331 (502)
.|...+..++..+.. ...++|++++|||+++... ++..++..+..+ +...... ....++....+.
T Consensus 172 --~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~-~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 172 --VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSP-RGARTVALWEPPLTELTG 246 (742)
T ss_pred --ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCC-cCceEEEEecCCcccccc
Confidence 477666666665543 2346899999999998754 466666665433 2222221 222222222221
Q ss_pred ----------hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHH
Q 010762 332 ----------ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEERDKIV 393 (502)
Q Consensus 332 ----------~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~ 393 (502)
...+... +......+.++||||+|++.|+.++..|+.. +..+..+||++++.+|..++
T Consensus 247 ~~~~~~r~~~~~~~~~~----l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie 322 (742)
T TIGR03817 247 ENGAPVRRSASAEAADL----LADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELE 322 (742)
T ss_pred ccccccccchHHHHHHH----HHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHH
Confidence 1122222 3333335689999999999999999988763 56889999999999999999
Q ss_pred HHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeC-CccHHHHH
Q 010762 394 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD-GDDMIIME 472 (502)
Q Consensus 394 ~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~ 472 (502)
+.|++|+.++||||+++++|||++++++||+|++| .++..|+||+||+||.|+.|.+++++.+ ..|..++.
T Consensus 323 ~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P--------~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 323 RALRDGELLGVATTNALELGVDISGLDAVVIAGFP--------GTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HHHHcCCceEEEECchHhccCCcccccEEEEeCCC--------CCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999 8999999999999999999999988863 34667778
Q ss_pred HHHHHhCCccccc
Q 010762 473 KIERYFDIKVTEV 485 (502)
Q Consensus 473 ~i~~~l~~~~~~~ 485 (502)
.++++++..++..
T Consensus 395 ~~~~~~~~~~e~~ 407 (742)
T TIGR03817 395 HPEALFDRPVEAT 407 (742)
T ss_pred CHHHHhcCCCccc
Confidence 8888888887764
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-50 Score=419.37 Aligned_cols=338 Identities=17% Similarity=0.190 Sum_probs=253.8
Q ss_pred CCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 104 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 104 ~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
.++....+...+...||+..++|+|.++|+.++.| +|+++++|||+|||++|++|++.. ++.+|||+|+++|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~G--rDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSL 512 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSG--YDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSL 512 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHH
Confidence 45666778778887899999999999999999999 999999999999999999999853 4579999999999
Q ss_pred HHHHHHHHHHhhcccCceeeEeecCCCCCccc--ccC--CCCCCCeEEEeCchHHHH---HHHc-Ccc-CCCceEEEEEe
Q 010762 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISK--RPPVTAQVVIGTPGTIKK---WMSA-KKL-GFSRLKILVYD 254 (502)
Q Consensus 184 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~Ilv~Tp~~l~~---~l~~-~~~-~~~~~~~lVlD 254 (502)
+.++...+... ++...++.++....... ... .....++|+|+||++|.. ++.. ..+ ....+.+||||
T Consensus 513 mqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 513 IQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred HHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 98655555442 56665665544322111 111 112468999999999852 1221 111 23458899999
Q ss_pred Cchhhhcc-cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChH
Q 010762 255 EADHMLDE-AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 333 (502)
Q Consensus 255 Eah~l~~~-~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (502)
|||+++.+ +.|+..+..+ ..+....+..+++++|||++..+...+...+.......... .....++ ++...+...
T Consensus 589 EAHcVSqWGhDFRpdYr~L-~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~RpNL--~y~Vv~k~k 664 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGL-GILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFNRPNL--WYSVVPKTK 664 (1195)
T ss_pred cchhhhhcccchHHHHHHH-HHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccCccce--EEEEeccch
Confidence 99999985 2488776653 23333344778999999999988877766655433222211 1111222 222233222
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccC
Q 010762 334 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 413 (502)
Q Consensus 334 ~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 413 (502)
.....+...+.. ......+||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|..|+++|||||+++++|
T Consensus 665 k~le~L~~~I~~-~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 665 KCLEDIDKFIKE-NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred hHHHHHHHHHHh-cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 222333332322 2235678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 414 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 414 ldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
||+|+|++||||++| .|++.|+||+|||||.|..|.|++|+...+
T Consensus 744 IDkPDVR~VIHydlP--------kSiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 744 INKPDVRFVIHHSLP--------KSIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred CCccCCcEEEEcCCC--------CCHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 999999999999999 899999999999999999999999997543
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-50 Score=405.71 Aligned_cols=325 Identities=17% Similarity=0.230 Sum_probs=243.4
Q ss_pred HHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 115 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 115 l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
|.+.+||..|+|+|.++|+.++.| +|+++++|||||||++|++|++.. +..+|||+|+++|+.|+...+..+
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g--~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLG--RDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 445689999999999999999999 999999999999999999999842 457999999999999999888764
Q ss_pred hcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHH-cCcc-CCCceEEEEEeCchhhhcc-cCCHHHH
Q 010762 195 GKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMS-AKKL-GFSRLKILVYDEADHMLDE-AGFRDDS 269 (502)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~-~~~~-~~~~~~~lVlDEah~l~~~-~~~~~~~ 269 (502)
++....+.+....... .........++|+++||+++..... ...+ ...++++||+||||++.++ ..|+..+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 3444444433322100 0111233457899999999753221 1111 4678999999999999874 3477766
Q ss_pred HHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhc--CCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhc
Q 010762 270 LRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK--DYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG 347 (502)
Q Consensus 270 ~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 347 (502)
..+. .+....++.+++++|||+++.+...+...+. .+..+... ....++...... ........+...+...
T Consensus 151 ~~l~-~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~~~v~~--~~~~~~~~l~~~l~~~- 223 (470)
T TIGR00614 151 KALG-SLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLYYEVRR--KTPKILEDLLRFIRKE- 223 (470)
T ss_pred HHHH-HHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcEEEEEe--CCccHHHHHHHHHHHh-
Confidence 5543 2333345778999999999887766655543 22222111 111122111111 1112333344433322
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecC
Q 010762 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP 427 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~ 427 (502)
..+..+||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|+.|.++|||||+++++|||+|++++||||++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 24566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 428 PVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 428 p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
| .|++.|+||+||+||.|..|.|++|+.+.+
T Consensus 304 P--------~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 304 P--------KSMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred C--------CCHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 9 899999999999999999999999998654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.9e-49 Score=404.04 Aligned_cols=333 Identities=16% Similarity=0.242 Sum_probs=248.2
Q ss_pred CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 107 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
+.....+.|.+.+||..|+|+|.++|+.++.| +|+++.+|||+|||++|++|++.. ...+|||+|+++|+.|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g--~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~d 80 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSG--RDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKD 80 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHH
Confidence 34444555666689999999999999999999 999999999999999999999853 3479999999999999
Q ss_pred HHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc-c
Q 010762 187 NLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-A 263 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~-~ 263 (502)
+...++.+ ++...+..+....... ..........+++++||+++........+...++++||+||||++..+ .
T Consensus 81 qv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~ 156 (607)
T PRK11057 81 QVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGH 156 (607)
T ss_pred HHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccC
Confidence 99988865 3444444433322111 111123345789999999987422222334557899999999999874 3
Q ss_pred CCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHH
Q 010762 264 GFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI 343 (502)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 343 (502)
+|+..+..+ ..+....++.+++++|||++......+...+.......... .....++. +.... ...+...+...+
T Consensus 157 ~fr~~y~~L-~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~-~~~r~nl~--~~v~~-~~~~~~~l~~~l 231 (607)
T PRK11057 157 DFRPEYAAL-GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFDRPNIR--YTLVE-KFKPLDQLMRYV 231 (607)
T ss_pred cccHHHHHH-HHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC-CCCCCcce--eeeee-ccchHHHHHHHH
Confidence 477666543 33444445788999999999887665555443222211111 11111221 11111 112233333323
Q ss_pred HHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEE
Q 010762 344 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIV 423 (502)
Q Consensus 344 ~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI 423 (502)
.. ..+.++||||+|++.|+.++..|...|+.+..+||+|++.+|..+++.|+.|..+|||||+++++|||+|+|++||
T Consensus 232 ~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI 309 (607)
T PRK11057 232 QE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (607)
T ss_pred Hh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE
Confidence 22 3567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 424 NYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 424 ~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
|||+| .|.+.|+||+||+||.|.+|.|++|+.+.+
T Consensus 310 ~~d~P--------~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 310 HFDIP--------RNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred EeCCC--------CCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 99999 899999999999999999999999998653
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.8e-48 Score=405.60 Aligned_cols=360 Identities=21% Similarity=0.258 Sum_probs=265.6
Q ss_pred CccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhh-hcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
.|++++|++.+++.+.+ .||..|+|+|.++++. ++.| +|++++||||||||++|.+|++..+. .+.+++|++|
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g--~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P 75 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDG--KNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVP 75 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCC--CcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeC
Confidence 58899999999999986 9999999999999998 6677 99999999999999999999999885 4568999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhh
Q 010762 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (502)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l 259 (502)
+++||.|+++.++++.. .++++....|+..... .....++|+|+||+++..++.+....+.++++||+||+|.+
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~-----~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRD-----EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc-----cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 99999999999998753 4677766666543221 11235799999999999988876555789999999999999
Q ss_pred hcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCC--------ceeeec---ccccccccceEEEEe
Q 010762 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDY--------NQLFVK---KEELSLESVKQYKVY 328 (502)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~ 328 (502)
.+ .++...+..++..+....+..|++++|||++.. .+ +..++... ..+... ........ .+..+.
T Consensus 150 ~d-~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~-la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~ 225 (737)
T PRK02362 150 DS-ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DE-LADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVE 225 (737)
T ss_pred CC-CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HH-HHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCC
Confidence 87 467777888888887666788999999999752 22 22222211 000000 00000000 000111
Q ss_pred cCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-----------------------------------
Q 010762 329 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----------------------------------- 373 (502)
Q Consensus 329 ~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------------------- 373 (502)
........ ..+......++++||||+|+..|..++..|...
T Consensus 226 ~~~~~~~~----~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 301 (737)
T PRK02362 226 VPSKDDTL----NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADC 301 (737)
T ss_pred CccchHHH----HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHH
Confidence 11111122 223333346789999999999999998887643
Q ss_pred -CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE----ecCCCCCCCCCCCCccchhhhhcc
Q 010762 374 -GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHRIGR 448 (502)
Q Consensus 374 -~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~----~~~p~~~~~~~~~s~~~y~qr~GR 448 (502)
...+..+|++|++.+|..+++.|++|.++|||||+.+++|+|+|++++||+ ||... ...+.+..+|.||+||
T Consensus 302 l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~---g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 302 VAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA---GMQPIPVLEYHQMAGR 378 (737)
T ss_pred HHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC---CceeCCHHHHHHHhhc
Confidence 136889999999999999999999999999999999999999999999997 66321 0123789999999999
Q ss_pred cccCCCc--ceEEEEeeCCccHHHHHHHHHHhCCccccc
Q 010762 449 AGRFGRK--GVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485 (502)
Q Consensus 449 ~~R~g~~--g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 485 (502)
|||.|.+ |.+++++.+.++ ..+.+++++.....++
T Consensus 379 AGR~g~d~~G~~ii~~~~~~~--~~~~~~~~l~~~~~~i 415 (737)
T PRK02362 379 AGRPGLDPYGEAVLLAKSYDE--LDELFERYIWADPEDV 415 (737)
T ss_pred CCCCCCCCCceEEEEecCchh--HHHHHHHHHhCCCCce
Confidence 9999864 999988864332 2233455554444333
No 41
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-49 Score=334.74 Aligned_cols=337 Identities=30% Similarity=0.541 Sum_probs=288.3
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
...-|.++-|.|++++++.. .||..|+.+|..+||...-| .|++++|..|.|||.+|.++.++.+.+......++++
T Consensus 40 hssgfrdfllkpellraivd-cgfehpsevqhecipqailg--mdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvm 116 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVM 116 (387)
T ss_pred eccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhc--chhheecccCCCceeeeehhhhhhcCCCCCeEEEEEE
Confidence 34569999999999999997 99999999999999999989 9999999999999999999999999887777789999
Q ss_pred cCcHHHHHHHHHHHHHhhcccC-ceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCc
Q 010762 178 CPTRELAIQNLEVLRKMGKHTG-ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEa 256 (502)
|.||+||-|+.....++++... +.+...+|+....... ..+.+.++|+|+|||+++.+.++..+++.+++.+|+||+
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkde--e~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDE--ELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccH--HHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 9999999999999888887765 6677777776554422 222336899999999999999999999999999999999
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccc-ccccccceEEEEecCChHHH
Q 010762 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE-ELSLESVKQYKVYCPDELAK 335 (502)
Q Consensus 257 h~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k 335 (502)
|.|+.+...+..+.+|.+..+. ..|++.||||++++++..+.+++.+|..+++..+ ..++.+++|+|+.+.... |
T Consensus 195 dkmle~lDMrRDvQEifr~tp~---~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-K 270 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPH---EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-K 270 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcc---cceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-h
Confidence 9999987788888888776655 7899999999999999999999999998887654 457888999988876543 3
Q ss_pred HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCC
Q 010762 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 415 (502)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gld 415 (502)
...+.+++ ..+ ....++||+.|.... . | ..+ ||||++++||+|
T Consensus 271 Nrkl~dLL-d~L-eFNQVvIFvKsv~Rl------------------------------~-f---~kr-~vat~lfgrgmd 313 (387)
T KOG0329|consen 271 NRKLNDLL-DVL-EFNQVVIFVKSVQRL------------------------------S-F---QKR-LVATDLFGRGMD 313 (387)
T ss_pred hhhhhhhh-hhh-hhcceeEeeehhhhh------------------------------h-h---hhh-hHHhhhhccccC
Confidence 33333322 222 567899999987651 0 2 113 899999999999
Q ss_pred CCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCC
Q 010762 416 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 488 (502)
Q Consensus 416 i~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 488 (502)
+-.++.|||||+| .+..+|+||+||+||.|.+|.+++|+++..+...+..+.+.+...|.++|+.
T Consensus 314 iervNi~~NYdmp--------~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 314 IERVNIVFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred cccceeeeccCCC--------CCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999999999 8899999999999999999999999999999999999999999999999865
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.3e-47 Score=403.20 Aligned_cols=364 Identities=20% Similarity=0.231 Sum_probs=250.5
Q ss_pred CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC------CCCCeEEEecCc
Q 010762 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN------LKAPQALCICPT 180 (502)
Q Consensus 107 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~------~~~~~~lil~Pt 180 (502)
+++.+.+.+. .+|..|||+|.++||.++.| +|++++||||||||++|++|+++.+... ..+.++|||+|+
T Consensus 18 l~~~v~~~~~--~~~~~~tpiQ~~Ai~~il~g--~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFK--EKFGTFTPPQRYAIPLIHEG--KNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHH--HccCCCCHHHHHHHHHHHcC--CCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCH
Confidence 4566655554 47899999999999999999 9999999999999999999999887532 235689999999
Q ss_pred HHHHHHHHHHHHH-------hh----ccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc--CCC
Q 010762 181 RELAIQNLEVLRK-------MG----KHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL--GFS 246 (502)
Q Consensus 181 ~~La~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~~~ 246 (502)
++|+.|+++.+.. +. ... ++.+....|+..... ........++|+||||++|..++....+ .+.
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~--r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~ 171 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYE--KQKMLKKPPHILITTPESLAILLNSPKFREKLR 171 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHH--HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHh
Confidence 9999999886553 22 122 455555555543322 1122334689999999999888765433 478
Q ss_pred ceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC-CCeeEEEEeecCChh--HHHHHHHHhc--CCceee-ecccccccc
Q 010762 247 RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS-GHCQVLLFSATFNET--VKNFVTRIVK--DYNQLF-VKKEELSLE 320 (502)
Q Consensus 247 ~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~-~~~q~v~~SAT~~~~--~~~~~~~~~~--~~~~~~-~~~~~~~~~ 320 (502)
++++||+||+|.+.+. .+...+...+..+.... ...|++++|||+++. +..++..... .+..+. +........
T Consensus 172 ~l~~VVIDE~H~l~~~-~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~ 250 (876)
T PRK13767 172 TVKWVIVDEIHSLAEN-KRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPF 250 (876)
T ss_pred cCCEEEEechhhhccC-ccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccc
Confidence 9999999999999863 44555555555554433 468999999999752 2222221100 011111 111000000
Q ss_pred cceEEEE----ecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC------CCcEEEecCCCCHHHHH
Q 010762 321 SVKQYKV----YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF------GYEVTTIMGATIQEERD 390 (502)
Q Consensus 321 ~~~~~~~----~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~ 390 (502)
.+..... ...........+...+.......+++||||||+..|+.++..|... +..+..+||+|++.+|.
T Consensus 251 ~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 251 DIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred eEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHH
Confidence 0000000 0001111122233334444456789999999999999999999863 46899999999999999
Q ss_pred HHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccC-CCcceEEEEeeCCccH-
Q 010762 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLMDGDDM- 468 (502)
Q Consensus 391 ~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~-g~~g~~~~~~~~~~~~- 468 (502)
.+++.|++|..+|||||+++++|||+|++++||+|+.| .|+..|+||+||+||. |..+..+++..+.++.
T Consensus 331 ~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P--------~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~ 402 (876)
T PRK13767 331 EVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSP--------KSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLV 402 (876)
T ss_pred HHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCC--------CCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHH
Confidence 99999999999999999999999999999999999999 8999999999999987 3344555555544442
Q ss_pred HHHHHHHHHhCCccccc
Q 010762 469 IIMEKIERYFDIKVTEV 485 (502)
Q Consensus 469 ~~~~~i~~~l~~~~~~~ 485 (502)
.....++......++.+
T Consensus 403 e~~~~~~~~~~~~ie~~ 419 (876)
T PRK13767 403 ECAVLLKKAREGKIDRV 419 (876)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 22223444455555543
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.8e-47 Score=392.80 Aligned_cols=325 Identities=17% Similarity=0.210 Sum_probs=247.8
Q ss_pred HHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 114 ~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
.|.+.|||..|+|+|.++|+.++.| +|+++++|||+|||++|++|++.. +..++||+|+++|+.|+...++.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g--~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~ 75 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDG--RDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRA 75 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHH
Confidence 4555699999999999999999999 999999999999999999999843 34789999999999999998887
Q ss_pred hhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc-cCCHHHHH
Q 010762 194 MGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-AGFRDDSL 270 (502)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~-~~~~~~~~ 270 (502)
+ ++.+..+.++...... ..........+|+++||++|........+...++++||+||||++..+ ..|+..+.
T Consensus 76 ~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 76 A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 5 3444444443322211 111223346789999999986543333445678999999999999864 35777776
Q ss_pred HHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccC
Q 010762 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKM 350 (502)
Q Consensus 271 ~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 350 (502)
.+....... +..+++++|||++..+...+...+.......... .....++....... ..+...+...+... .+
T Consensus 152 ~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~---~~~~~~l~~~l~~~--~~ 224 (591)
T TIGR01389 152 RLGSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEFIT-SFDRPNLRFSVVKK---NNKQKFLLDYLKKH--RG 224 (591)
T ss_pred HHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-CCCCCCcEEEEEeC---CCHHHHHHHHHHhc--CC
Confidence 655443333 3456999999999888776666654322211111 11111222111111 22333444434332 36
Q ss_pred CcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCC
Q 010762 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVK 430 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~ 430 (502)
.++||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|..|..+|||||+++++|||+|++++||||++|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p-- 302 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP-- 302 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC--
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 431 HGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 431 ~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
.|.+.|+||+||+||.|..|.|++|+.+.
T Consensus 303 ------~s~~~y~Q~~GRaGR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 303 ------GNLESYYQEAGRAGRDGLPAEAILLYSPA 331 (591)
T ss_pred ------CCHHHHhhhhccccCCCCCceEEEecCHH
Confidence 89999999999999999999999888754
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.2e-46 Score=380.33 Aligned_cols=318 Identities=19% Similarity=0.213 Sum_probs=239.7
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCc-cEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEE-ecCcHHHHHHHHHHHHHhh
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYR-NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC-ICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~-~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~li-l~Pt~~La~q~~~~~~~~~ 195 (502)
..||. |||||.++||.++.| + ++++++|||||||.++.++.+.. ......++.|| ++|||+|+.|+++.+.+++
T Consensus 11 ~~G~~-PtpiQ~~~i~~il~G--~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 11 LHGYS-PFPWQLSLAERFVAG--QPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred HhCCC-CCHHHHHHHHHHHcC--CCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 36888 999999999999999 6 68889999999999776666633 22233445555 6799999999999999988
Q ss_pred ccc-----------------------CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc---------
Q 010762 196 KHT-----------------------GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL--------- 243 (502)
Q Consensus 196 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--------- 243 (502)
..+ ++++.+++|+..... .......+++|||+|+ +++.+..+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~--q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND--EWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH--HHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 755 366777787765443 3445556799999995 44444443
Q ss_pred -------CCCceEEEEEeCchhhhcccCCHHHHHHHHHHhh--hcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecc
Q 010762 244 -------GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE--RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKK 314 (502)
Q Consensus 244 -------~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~--~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
.+.++++||||||| ++ ++|.+.+..|++.+. ....++|+++||||++..+......++.++..+.+..
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LE-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred cccchhhhhccceEEEEehhh--hc-cccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 26789999999999 43 589999999998752 2112379999999999888877777776665555544
Q ss_pred cccccccceEEEEecCChHHHHHHHHHHHHH-hcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHH---
Q 010762 315 EELSLESVKQYKVYCPDELAKVMVIRDRIFE-LGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERD--- 390 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~--- 390 (502)
.......+.+++ ... ...+...+...+.. ....++++||||||++.|..+++.|...++ ..+||+|++.+|.
T Consensus 238 ~~l~a~ki~q~v-~v~-~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~ 313 (844)
T TIGR02621 238 KRLAAKKIVKLV-PPS-DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLV 313 (844)
T ss_pred ccccccceEEEE-ecC-hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHH
Confidence 445555555542 222 22333333322222 223568899999999999999999998877 9999999999999
Q ss_pred --HHHHHHHc----CC-------CeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc-
Q 010762 391 --KIVKEFKD----GL-------TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG- 456 (502)
Q Consensus 391 --~~~~~f~~----~~-------~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g- 456 (502)
.++++|++ |. ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+.|
T Consensus 314 ~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP----------~esyIQRiGRtgR~G~~~~ 382 (844)
T TIGR02621 314 KKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP----------FESMQQRFGRVNRFGELQA 382 (844)
T ss_pred HHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC----------HHHHHHHhcccCCCCCCCC
Confidence 88999987 43 679999999999999986 899998777 578999999999999754
Q ss_pred eEEEEee
Q 010762 457 VVFNLLM 463 (502)
Q Consensus 457 ~~~~~~~ 463 (502)
..++++.
T Consensus 383 ~~i~vv~ 389 (844)
T TIGR02621 383 CQIAVVH 389 (844)
T ss_pred ceEEEEe
Confidence 4455553
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-45 Score=389.20 Aligned_cols=340 Identities=17% Similarity=0.187 Sum_probs=253.4
Q ss_pred CccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhh-hcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
.|+++++++.+.+.+.+ .||..|+|+|.++++. ++.| +|++++||||||||++|.+|++.++.. .+.++|+|+|
T Consensus 2 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g--~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P 76 (720)
T PRK00254 2 KVDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEG--KNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVP 76 (720)
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCC--CcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeC
Confidence 57889999999999987 9999999999999996 6777 999999999999999999999988753 3568999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhh
Q 010762 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (502)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l 259 (502)
+++|+.|+++.+..+. ..++.+....|+..... .....++|+|+||+++..++......+.++++||+||+|.+
T Consensus 77 ~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~-----~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 77 LKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTD-----EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred hHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCch-----hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 9999999999998764 35777776766543321 11235799999999999988776556889999999999999
Q ss_pred hcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccc--cceEEEEecCCh-HHH-
Q 010762 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLE--SVKQYKVYCPDE-LAK- 335 (502)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~k- 335 (502)
.+ .++...+..++..+.. ..|++++|||++.. .++. .++.... +.......... ...+........ ..+
T Consensus 151 ~~-~~rg~~le~il~~l~~---~~qiI~lSATl~n~-~~la-~wl~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T PRK00254 151 GS-YDRGATLEMILTHMLG---RAQILGLSATVGNA-EELA-EWLNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERF 223 (720)
T ss_pred CC-ccchHHHHHHHHhcCc---CCcEEEEEccCCCH-HHHH-HHhCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcc
Confidence 86 3677777777777654 67999999999753 3333 3443221 11111111110 011111111111 001
Q ss_pred HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh---------------------------------CCCcEEEecC
Q 010762 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---------------------------------FGYEVTTIMG 382 (502)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~l~~ 382 (502)
.......+......++++||||+|+..|+.++..|.. ....+..+|+
T Consensus 224 ~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa 303 (720)
T PRK00254 224 PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303 (720)
T ss_pred hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC
Confidence 1112222334444678999999999999888766632 1235899999
Q ss_pred CCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE-------ecCCCCCCCCCCCCccchhhhhcccccCC--
Q 010762 383 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN-------YDPPVKHGKHLEPDCEVYLHRIGRAGRFG-- 453 (502)
Q Consensus 383 ~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~-------~~~p~~~~~~~~~s~~~y~qr~GR~~R~g-- 453 (502)
+|++.+|..+.+.|++|.++|||||+.+++|+|+|++++||. ++.|. .++.+|.||+||+||.|
T Consensus 304 gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~-------~~~~~~~Qm~GRAGR~~~d 376 (720)
T PRK00254 304 GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWED-------IPVLEIQQMMGRAGRPKYD 376 (720)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCcee-------CCHHHHHHhhhccCCCCcC
Confidence 999999999999999999999999999999999999999995 33331 35678999999999975
Q ss_pred CcceEEEEeeCC
Q 010762 454 RKGVVFNLLMDG 465 (502)
Q Consensus 454 ~~g~~~~~~~~~ 465 (502)
..|.+++++...
T Consensus 377 ~~G~~ii~~~~~ 388 (720)
T PRK00254 377 EVGEAIIVATTE 388 (720)
T ss_pred CCceEEEEecCc
Confidence 579999888753
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.3e-46 Score=390.90 Aligned_cols=329 Identities=19% Similarity=0.207 Sum_probs=249.0
Q ss_pred CCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCC----CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc
Q 010762 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (502)
Q Consensus 105 ~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~----~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt 180 (502)
+.....+.+.+.+.++|. |||+|..||+.++.+ ..+|++++|+||||||.+|++|++..+. .+.+++|++||
T Consensus 434 ~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~---~g~qvlvLvPT 509 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL---DGKQVAVLVPT 509 (926)
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---hCCeEEEEeCc
Confidence 345567777777778996 999999999999874 2379999999999999999999998874 35689999999
Q ss_pred HHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
++||.|+++.+++++...++.+..+.+..+.... .......+.++|+|+||.. + ...+.+.++++||+||+|+
T Consensus 510 ~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahr 584 (926)
T TIGR00580 510 TLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQR 584 (926)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccc
Confidence 9999999999999888878877666655432211 1111223358999999942 2 2456688999999999998
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
+.. .....++.+. .++|+++||||+.+....+......++..+...... ...+..++..... . .
T Consensus 585 fgv------~~~~~L~~~~---~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~--~---~ 648 (926)
T TIGR00580 585 FGV------KQKEKLKELR---TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP--E---L 648 (926)
T ss_pred cch------hHHHHHHhcC---CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH--H---H
Confidence 532 1233344443 378999999998776655444334444433322211 1223333332221 1 1
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi 416 (502)
+...+......+++++|||++++.++.+++.|... ++++..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 649 i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI 728 (926)
T TIGR00580 649 VREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI 728 (926)
T ss_pred HHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc
Confidence 12223333346789999999999999999999985 7899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 417 ~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
|++++||+++.|. .+...|.||+||+||.|+.|.|++++.+.
T Consensus 729 p~v~~VIi~~a~~-------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 729 PNANTIIIERADK-------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccCCEEEEecCCC-------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999984 35678999999999999999999998643
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-45 Score=382.39 Aligned_cols=357 Identities=17% Similarity=0.191 Sum_probs=258.9
Q ss_pred CccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc
Q 010762 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (502)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt 180 (502)
.|+++++++.+++.+.. .+|. ++|+|.++++.++.| ++++++||||||||+++.++++..+.. +.++++++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~--~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~ 74 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKG--ENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPL 74 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcC--CcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEech
Confidence 57889999999999976 7887 999999999999888 999999999999999999999987753 4589999999
Q ss_pred HHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhh
Q 010762 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 260 (502)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~ 260 (502)
++||.|+++.+.++. ..+..+...+|+..... .....++|+|+||+++..++......+.++++||+||+|++.
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~-----~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPP-----DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCh-----hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 999999999998764 35666666665543221 112357999999999998888766668899999999999988
Q ss_pred cccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccccccccc-ce-EEEEecCChHHHHHH
Q 010762 261 DEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES-VK-QYKVYCPDELAKVMV 338 (502)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~k~~~ 338 (502)
+ .++...+..++..+....++.|++++|||++.. .++. .++.... +.......+... +. ...............
T Consensus 149 d-~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la-~wl~~~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 149 D-EDRGPTLETVLSSARYVNPDARILALSATVSNA-NELA-QWLNASL-IKSNFRPVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred C-CCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHH-HHhCCCc-cCCCCCCCCeEEEEEecCeeeeccccccccc
Confidence 6 366666777777766556688999999999753 3333 3333211 111111111100 00 000111111111111
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-------------------------CCcEEEecCCCCHHHHHHHH
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-------------------------GYEVTTIMGATIQEERDKIV 393 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~l~~~~~~~~r~~~~ 393 (502)
+...+......++++||||++++.|+.++..|... ...+..+||+|++.+|..++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 22223443456789999999999999999888653 12478899999999999999
Q ss_pred HHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCC-CCCCCCccchhhhhcccccCCC--cceEEEEeeCCccHHH
Q 010762 394 KEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHG-KHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGDDMII 470 (502)
Q Consensus 394 ~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~-~~~~~s~~~y~qr~GR~~R~g~--~g~~~~~~~~~~~~~~ 470 (502)
+.|++|.++|||||+++++|+|+|+. .||+++.+.... ...+.++.+|.||+||+||.|. .|.+++++...++.
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~-- 381 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY-- 381 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH--
Confidence 99999999999999999999999985 566667654322 2234678899999999999984 67788887654433
Q ss_pred HHHHHHHh
Q 010762 471 MEKIERYF 478 (502)
Q Consensus 471 ~~~i~~~l 478 (502)
..+++++
T Consensus 382 -~~~~~~l 388 (674)
T PRK01172 382 -DAAKKYL 388 (674)
T ss_pred -HHHHHHH
Confidence 2345555
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2e-44 Score=386.98 Aligned_cols=361 Identities=16% Similarity=0.178 Sum_probs=262.6
Q ss_pred CCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCC----CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 106 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~----~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
.....+.+.+...++| .||++|.++|+.++.+ ..+|++++|+||+|||.+|+.+++..+. .+.+++|++||+
T Consensus 584 ~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~ 659 (1147)
T PRK10689 584 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTT 659 (1147)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcH
Confidence 3445666666666899 5999999999999886 2379999999999999999888876653 467899999999
Q ss_pred HHHHHHHHHHHHhhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhh
Q 010762 182 ELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (502)
Q Consensus 182 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l 259 (502)
+||.|+++.+.+++...++.+.++.++.+..... ........++|+|+||+.+ . ..+.+.++++||+||+|++
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhc
Confidence 9999999999988777777777776665443221 1112234689999999643 2 3456789999999999986
Q ss_pred hcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHH
Q 010762 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVI 339 (502)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 339 (502)
. +. ....++.+ ++++|+++||||+++....+....+.++..+...... ...+.++.........+..
T Consensus 735 G----~~--~~e~lk~l---~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~-- 801 (1147)
T PRK10689 735 G----VR--HKERIKAM---RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREA-- 801 (1147)
T ss_pred c----hh--HHHHHHhc---CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHH--
Confidence 3 22 12334444 3478999999999888777666666666655443322 1234444333322222211
Q ss_pred HHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 340 ~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
+......+++++||||+++.++.+++.|... +..+..+||+|++.+|.+++..|++|+.+|||||+++++|+|+|
T Consensus 802 ---il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 802 ---ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred ---HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccc
Confidence 2222235689999999999999999999987 78999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHHHHHHHH
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALK 497 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 497 (502)
++++||..+... .+...|+||+||+||.|+.|.|++++.+.... -..-.+.+ ..++++.+...+|+.+++
T Consensus 879 ~v~~VIi~~ad~-------fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~--~~~~~~rl-~~~~~~~~lg~gf~~a~~ 948 (1147)
T PRK10689 879 TANTIIIERADH-------FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM--TTDAQKRL-EAIASLEDLGAGFALATH 948 (1147)
T ss_pred cCCEEEEecCCC-------CCHHHHHHHhhccCCCCCceEEEEEeCCCccc--CHHHHHHH-HHHHHhcCCcchHHHHHH
Confidence 999999654431 24556999999999999999999887543210 01111111 123345555668888888
Q ss_pred HcCC
Q 010762 498 AAGL 501 (502)
Q Consensus 498 ~~~~ 501 (502)
++.|
T Consensus 949 dl~~ 952 (1147)
T PRK10689 949 DLEI 952 (1147)
T ss_pred HHHh
Confidence 7754
No 49
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.1e-44 Score=386.35 Aligned_cols=293 Identities=22% Similarity=0.266 Sum_probs=223.5
Q ss_pred HHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 115 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 115 l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
+.+.+|+ .||++|+.++|.++.| +|++++||||||||. |++++...+. .++.+++||+||++|+.|+++.++.+
T Consensus 73 f~~~~G~-~pt~iQ~~~i~~il~g--~dv~i~ApTGsGKT~-f~l~~~~~l~--~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 73 FKKKTGS-KPWSLQRTWAKRLLLG--ESFAIIAPTGVGKTT-FGLVMSLYLA--KKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHhcCC-CCcHHHHHHHHHHHCC--CcEEEEcCCCCCHHH-HHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 3344688 7999999999999999 999999999999996 4555554443 24678999999999999999999999
Q ss_pred hcccCceeeEeecCCCCCc---c-cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhc---------
Q 010762 195 GKHTGITSECAVPTDSTNY---V-PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261 (502)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~--------- 261 (502)
+...++.+....++.+... . .........++|+|+||++|.+++. .+....+++||+||||+|++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 9888877766666543211 1 1111223458999999999999876 34556799999999999985
Q ss_pred -ccCCH-HHHHHHHHHhhhc---------------------CCCeeEEEEeecCChh-HHHHHHHHhcCCceeeeccccc
Q 010762 262 -EAGFR-DDSLRIMKDIERS---------------------SGHCQVLLFSATFNET-VKNFVTRIVKDYNQLFVKKEEL 317 (502)
Q Consensus 262 -~~~~~-~~~~~i~~~l~~~---------------------~~~~q~v~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~ 317 (502)
.+||. +.+..++..++.. ....|++++|||+++. +.. .++..+..+.+.....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVF 301 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccc
Confidence 25785 5677776665430 1157999999999864 432 2233344455555555
Q ss_pred ccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhh---HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHH
Q 010762 318 SLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS---ASALHKALKDFGYEVTTIMGATIQEERDKIVK 394 (502)
Q Consensus 318 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~ 394 (502)
...++.+.++.+. .+...+..++... +.++||||+++.. |+.+++.|...|+++..+||+| .+.++
T Consensus 302 ~~rnI~~~yi~~~---~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 302 YLRNIVDSYIVDE---DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFE 370 (1176)
T ss_pred ccCCceEEEEEcc---cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHH
Confidence 6677888887765 2444444433322 3579999999877 9999999999999999999999 23459
Q ss_pred HHHcCCCeEEEE----cCccccCCCCCC-CCEEEEecCCC
Q 010762 395 EFKDGLTQVLIS----TDVLARGFDQQQ-VNLIVNYDPPV 429 (502)
Q Consensus 395 ~f~~~~~~iLv~----T~~~~~Gldi~~-v~~VI~~~~p~ 429 (502)
+|++|+++|||| ||+++||||+|+ +++|||||.|.
T Consensus 371 ~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 371 KFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 999999999999 699999999999 89999999997
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.1e-43 Score=364.26 Aligned_cols=326 Identities=22% Similarity=0.228 Sum_probs=241.7
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC----CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH
Q 010762 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPP----YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (502)
Q Consensus 109 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~----~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La 184 (502)
..+.+.+.+.++|. ||++|.++++.+..+. ..+.+++|+||||||++|++|++..+. .+.+++|++||++||
T Consensus 248 ~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHH
Confidence 56677777778995 9999999999998862 248999999999999999999998874 467899999999999
Q ss_pred HHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc
Q 010762 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 262 (502)
Q Consensus 185 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~ 262 (502)
.|+++.++++....++++..+.|+...... .......+.++|+|+||+.+.+ .+.+.++++||+||+|++...
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~ 398 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE 398 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH
Confidence 999999999998888888888777653221 1122233458999999987743 345788999999999986431
Q ss_pred cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHH
Q 010762 263 AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 342 (502)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 342 (502)
. ...+.. ....+++++||||+.+....+. .........+.........+.......... ..+...
T Consensus 399 --q----r~~l~~---~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~----~~~~~~ 463 (681)
T PRK10917 399 --Q----RLALRE---KGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPDSRR----DEVYER 463 (681)
T ss_pred --H----HHHHHh---cCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCcccH----HHHHHH
Confidence 1 122222 2235789999999876543322 222222222221111112233333332221 222233
Q ss_pred HHHhcccCCcEEEEcCCh--------hhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcccc
Q 010762 343 IFELGEKMGQTIIFVRTK--------NSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412 (502)
Q Consensus 343 l~~~~~~~~~~lVF~~s~--------~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~ 412 (502)
+......+.+++|||+.+ ..+..+++.|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 444445778999999964 3456677777765 578999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 413 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 413 Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
|+|+|++++||+++.|. .+...|.||+||+||.|..|.|++++.+.
T Consensus 544 GiDip~v~~VIi~~~~r-------~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 544 GVDVPNATVMVIENAER-------FGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred CcccCCCcEEEEeCCCC-------CCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 99999999999999994 24677889999999999999999998533
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.4e-43 Score=355.58 Aligned_cols=358 Identities=21% Similarity=0.275 Sum_probs=271.7
Q ss_pred CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC-----CCCCeEEEecCcH
Q 010762 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-----LKAPQALCICPTR 181 (502)
Q Consensus 107 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~-----~~~~~~lil~Pt~ 181 (502)
|++.+.+.+.. . |..|||.|.+|||.+.+| +|++++||||||||+++.+|+++.+... ..+..+|+|+|.|
T Consensus 8 l~~~v~~~~~~-~-~~~~t~~Q~~a~~~i~~G--~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 8 LDPRVREWFKR-K-FTSLTPPQRYAIPEIHSG--ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred cCHHHHHHHHH-h-cCCCCHHHHHHHHHHhCC--CceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 67888888876 3 999999999999999999 9999999999999999999999998655 2346899999999
Q ss_pred HHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc--CCCceEEEEEeCchhh
Q 010762 182 ELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL--GFSRLKILVYDEADHM 259 (502)
Q Consensus 182 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~--~~~~~~~lVlDEah~l 259 (502)
+|...+.+.+..++..+|+.+...+|...... ..+...+.+||+|+||+.|.-++....+ .+.++++||+||+|.+
T Consensus 84 ALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~e--r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 84 ALNNDIRRRLEEPLRELGIEVAVRHGDTPQSE--KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHcCCccceecCCCChHH--hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 99999999999999999999877777665543 3344555799999999999888876433 5889999999999999
Q ss_pred hcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCc---eeeecccccccccceEEEEecCCh----
Q 010762 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYN---QLFVKKEELSLESVKQYKVYCPDE---- 332 (502)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---- 332 (502)
..+ .-..++..-+..+....++.|.+++|||..+.. . +.+++.... .+.... ...... +.+..+..
T Consensus 162 ~~s-KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~-~-varfL~g~~~~~~Iv~~~-~~k~~~---i~v~~p~~~~~~ 234 (814)
T COG1201 162 AES-KRGVQLALSLERLRELAGDFQRIGLSATVGPPE-E-VAKFLVGFGDPCEIVDVS-AAKKLE---IKVISPVEDLIY 234 (814)
T ss_pred hcc-ccchhhhhhHHHHHhhCcccEEEeehhccCCHH-H-HHHHhcCCCCceEEEEcc-cCCcce---EEEEecCCcccc
Confidence 863 233344555666666655889999999987432 2 333333222 222111 111111 11111111
Q ss_pred -HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCC-CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 333 -LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG-YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 333 -~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
..........+.+..+....+|||+||+..++.++..|+..+ ..+..+||.++.++|..+.++|++|+.+++|||..+
T Consensus 235 ~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSL 314 (814)
T COG1201 235 DEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSL 314 (814)
T ss_pred ccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccch
Confidence 112233334455555566799999999999999999999887 899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccC-CCcceEEEEeeCCccH-HHHHHHHHHhCCccccc
Q 010762 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLMDGDDM-IIMEKIERYFDIKVTEV 485 (502)
Q Consensus 411 ~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~-g~~g~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~ 485 (502)
+-|||+.+++.||+|+.| .++..++||+||+|+. |...+.+++..+.+|. ...-.....+...++..
T Consensus 315 ELGIDiG~vdlVIq~~SP--------~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~ 383 (814)
T COG1201 315 ELGIDIGDIDLVIQLGSP--------KSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERI 383 (814)
T ss_pred hhccccCCceEEEEeCCc--------HHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999 8999999999999985 4446666666553332 33334455555555544
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.3e-42 Score=359.19 Aligned_cols=327 Identities=23% Similarity=0.261 Sum_probs=238.2
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC----CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH
Q 010762 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPP----YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (502)
Q Consensus 109 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~----~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La 184 (502)
..++..+.+.++| .||+.|..+|+.++.+. ..+.+++|+||||||++|++|++..+. .+.+++|++||++||
T Consensus 222 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA 297 (630)
T TIGR00643 222 EELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILA 297 (630)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHH
Confidence 3555556566999 59999999999998762 236899999999999999999998874 466899999999999
Q ss_pred HHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc
Q 010762 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 262 (502)
Q Consensus 185 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~ 262 (502)
.|+++.+++++...++.+..++++...... .......+.++|+|+||+.+.+ .+.+.++++||+||+|++...
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~ 372 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE 372 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH
Confidence 999999999998888888888877654321 1222334468999999988753 345788999999999986431
Q ss_pred cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHH
Q 010762 263 AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 342 (502)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 342 (502)
.+ ..+...... ...+++++||||+.+....+ ....................+......... + ..+...
T Consensus 373 --qr---~~l~~~~~~-~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~---~-~~~~~~ 440 (630)
T TIGR00643 373 --QR---KKLREKGQG-GFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDE---K-DIVYEF 440 (630)
T ss_pred --HH---HHHHHhccc-CCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcch---H-HHHHHH
Confidence 11 112222211 12568999999976644322 111221111111111111223332222211 1 233333
Q ss_pred HHHhcccCCcEEEEcCCh--------hhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcccc
Q 010762 343 IFELGEKMGQTIIFVRTK--------NSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412 (502)
Q Consensus 343 l~~~~~~~~~~lVF~~s~--------~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~ 412 (502)
+......+.+++|||+.. ..+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 520 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEV 520 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeec
Confidence 444445678999999976 4566777777753 688999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEee
Q 010762 413 GFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 413 Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
|+|+|++++||+++.|. .+...|.||+||+||.|++|.|++++.
T Consensus 521 GvDiP~v~~VIi~~~~r-------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 521 GVDVPNATVMVIEDAER-------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CcccCCCcEEEEeCCCc-------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999999984 256788899999999999999999984
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.2e-42 Score=353.51 Aligned_cols=317 Identities=16% Similarity=0.162 Sum_probs=229.6
Q ss_pred HHHHhhhhhhcCCCCccEEEECcCCCcchhH---------hHHHHHhccC---CCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTC---------FVLGMLSRVD---PNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~---------~l~~il~~l~---~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
.+|.++++.++.| ++++++|+||||||.+ |++|.+..+. ......+++|++|||+||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~g--kdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISR--KPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhC--CCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 5899999999999 9999999999999997 4445555442 233456899999999999999998877
Q ss_pred hhcc---cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHH
Q 010762 194 MGKH---TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSL 270 (502)
Q Consensus 194 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~ 270 (502)
..+. .+..+...+|+.... .........+|+|+|++... ..+.++++|||||||++... .+.+.
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~---~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~---~DllL 311 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDE---LINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQI---GDIII 311 (675)
T ss_pred HhCccccCCceEEEEECCcchH---HhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccc---hhHHH
Confidence 5544 234455566665421 11122225789999976311 24788999999999998763 24455
Q ss_pred HHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCC---------hHHHHHHHHH
Q 010762 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD---------ELAKVMVIRD 341 (502)
Q Consensus 271 ~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~ 341 (502)
.+++.+.. ..+|+++||||++.++..+ ..++.++..+.+.. .....+.+++..... ...+. .+..
T Consensus 312 ~llk~~~~--~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~ 385 (675)
T PHA02653 312 AVARKHID--KIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVT 385 (675)
T ss_pred HHHHHhhh--hcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHH-HHHH
Confidence 55544432 1358999999999887765 67887777766542 233556666553321 11111 1222
Q ss_pred HHHHhc-ccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHH-HcCCCeEEEEcCccccCCCCC
Q 010762 342 RIFELG-EKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEF-KDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 342 ~l~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f-~~~~~~iLv~T~~~~~Gldi~ 417 (502)
.+.... ...+.+||||+++.+++.+++.|... ++.+..+||+|++. ++.+++| ++|+.+|||||++++||||+|
T Consensus 386 ~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp 463 (675)
T PHA02653 386 ALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIR 463 (675)
T ss_pred HHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhcccccc
Confidence 233222 24578999999999999999999887 79999999999974 5667777 689999999999999999999
Q ss_pred CCCEEEEec---CCC-CCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 418 QVNLIVNYD---PPV-KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 418 ~v~~VI~~~---~p~-~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
+|++||++| .|. ..+...+-|.++|.||+||+||. ++|.|+.|++..+
T Consensus 464 ~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 464 NATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred CeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 999999999 442 11112234888999999999999 7999999998543
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.1e-42 Score=355.41 Aligned_cols=332 Identities=15% Similarity=0.234 Sum_probs=241.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH-HhhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR-KMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
++++++|+||||||++|.+++++... .+++++|+.|+|++|.|+++.+. .++...+..+.+.+.... .
T Consensus 18 ~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--------~ 86 (819)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--------K 86 (819)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc--------c
Confidence 89999999999999999999998763 34689999999999999999885 444445555555444322 1
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh-hhcccCCHHHH-HHHHHHhhhcCCCeeEEEEeecCChhHH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH-MLDEAGFRDDS-LRIMKDIERSSGHCQVLLFSATFNETVK 297 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~-l~~~~~~~~~~-~~i~~~l~~~~~~~q~v~~SAT~~~~~~ 297 (502)
....++|+|+|||+|++++... ..+.++++|||||+|. +++ .++...+ ..+...+ +++.|+++||||++...
T Consensus 87 ~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~-~Dl~L~ll~~i~~~l---r~dlqlIlmSATl~~~~- 160 (819)
T TIGR01970 87 VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLD-ADLGLALALDVQSSL---REDLKILAMSATLDGER- 160 (819)
T ss_pred cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhc-cchHHHHHHHHHHhc---CCCceEEEEeCCCCHHH-
Confidence 2235789999999999998864 4699999999999995 554 2443222 2233333 34789999999998654
Q ss_pred HHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHh-cccCCcEEEEcCChhhHHHHHHHHHh---C
Q 010762 298 NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL-GEKMGQTIIFVRTKNSASALHKALKD---F 373 (502)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~---~ 373 (502)
+..++.+...+..... ...+.++|............+...+... ....+.+|||++++.+++.++..|.. .
T Consensus 161 --l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~ 235 (819)
T TIGR01970 161 --LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDS 235 (819)
T ss_pred --HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCC
Confidence 3556655544443322 2234555554433222111111112221 12468899999999999999999987 4
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCC----------CCCCccchh
Q 010762 374 GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKH----------LEPDCEVYL 443 (502)
Q Consensus 374 ~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~----------~~~s~~~y~ 443 (502)
++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++||++++|...... .+-|-.+|.
T Consensus 236 ~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 315 (819)
T TIGR01970 236 DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASAT 315 (819)
T ss_pred CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHH
Confidence 7899999999999999999999999999999999999999999999999999998532110 122455689
Q ss_pred hhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHHHHHHHHHcCC
Q 010762 444 HRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALKAAGL 501 (502)
Q Consensus 444 qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
||+||+||. ++|.||.|++..+ +..+.++...+|... ++..+...++..|+
T Consensus 316 QR~GRAGR~-~~G~cyrL~t~~~----~~~l~~~~~PEI~r~--~L~~~~L~l~~~g~ 366 (819)
T TIGR01970 316 QRAGRAGRL-EPGVCYRLWSEEQ----HQRLPAQDEPEILQA--DLSGLALELAQWGA 366 (819)
T ss_pred hhhhhcCCC-CCCEEEEeCCHHH----HHhhhcCCCcceecc--CcHHHHHHHHHcCC
Confidence 999999999 7999999997432 234555555555444 77888888877764
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-42 Score=340.69 Aligned_cols=330 Identities=18% Similarity=0.231 Sum_probs=255.3
Q ss_pred HHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH
Q 010762 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (502)
Q Consensus 113 ~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (502)
..|...+||..++|-|..+|..+++| +|+++..|||.||++||.+|++-. .+.+|||+|..+|.....+.++
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g--~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~ 78 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSG--KDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLE 78 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcC--CcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHH
Confidence 45666689999999999999999999 999999999999999999999844 4479999999999999999988
Q ss_pred HhhcccCceeeEeecCCCCCc--ccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc-cCCHHHH
Q 010762 193 KMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-AGFRDDS 269 (502)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~-~~~~~~~ 269 (502)
..+ +.+.++....+... ...........++++-+|++|..-.-.+.+.-..+.++||||||+++.+ +.|++.+
T Consensus 79 ~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 79 AAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred HcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 765 44444443322221 1122333445789999999985433223333556889999999999986 3599998
Q ss_pred HHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCce-eeecccccccccceEEEEecCChHHHHHHHHHHHHHhcc
Q 010762 270 LRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQ-LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGE 348 (502)
Q Consensus 270 ~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 348 (502)
..+-......+ +..++++|||.++.+...+...+..... +.... ...+++.-..........+...+.+ ....
T Consensus 155 ~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s--fdRpNi~~~v~~~~~~~~q~~fi~~---~~~~ 228 (590)
T COG0514 155 RRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS--FDRPNLALKVVEKGEPSDQLAFLAT---VLPQ 228 (590)
T ss_pred HHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec--CCCchhhhhhhhcccHHHHHHHHHh---hccc
Confidence 88766665544 7899999999999988877776553332 22211 1112222111222222223332221 1233
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP 428 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p 428 (502)
..+..||||.|++.++.+++.|...|+.+..+|++|+..+|..+.++|.+++..|+|||.++++|||.|+|++|||||+|
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP 308 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLP 308 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccH
Q 010762 429 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 468 (502)
Q Consensus 429 ~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~ 468 (502)
.|++.|+|-+||+||.|.+..|++|+.+.|..
T Consensus 309 --------~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 309 --------GSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred --------CCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 89999999999999999999999999876533
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4e-41 Score=351.57 Aligned_cols=333 Identities=16% Similarity=0.207 Sum_probs=237.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH-hhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
++++++|+||||||++|.+++++.... .++++|++|||++|.|+++.+.. ++...+..+.+.+++...
T Consensus 21 ~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~-------- 89 (812)
T PRK11664 21 PQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK-------- 89 (812)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc--------
Confidence 899999999999999999999976532 34899999999999999998854 455556666555544321
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHH-HHHHHHHHhhhcCCCeeEEEEeecCChhHHH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD-DSLRIMKDIERSSGHCQVLLFSATFNETVKN 298 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~-~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~ 298 (502)
....++|+|+|||+|.+++..+ ..+.++++|||||+|...-...+.- .+..+++. .+++.|+++||||++...
T Consensus 90 ~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~---lr~~lqlilmSATl~~~~-- 163 (812)
T PRK11664 90 VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQG---LRDDLKLLIMSATLDNDR-- 163 (812)
T ss_pred cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHh---CCccceEEEEecCCCHHH--
Confidence 1224689999999999998864 4699999999999997322112211 12223232 344789999999998652
Q ss_pred HHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHh---CC
Q 010762 299 FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKD---FG 374 (502)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~---~~ 374 (502)
+..++.+...+..... ...+.++|............+...+.... ...+.+|||+++..+++.+++.|.. .+
T Consensus 164 -l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~ 239 (812)
T PRK11664 164 -LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASD 239 (812)
T ss_pred -HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCC
Confidence 3456655544443322 22355555554433222111111222222 2468999999999999999999987 57
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCC----------CCCCccchhh
Q 010762 375 YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKH----------LEPDCEVYLH 444 (502)
Q Consensus 375 ~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~----------~~~s~~~y~q 444 (502)
+.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++||+++++.....+ .+-|-++|.|
T Consensus 240 ~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~Q 319 (812)
T PRK11664 240 VLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQ 319 (812)
T ss_pred ceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhh
Confidence 889999999999999999999999999999999999999999999999998887532211 1224568999
Q ss_pred hhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHHHHHHHHHcCC
Q 010762 445 RIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALKAAGL 501 (502)
Q Consensus 445 r~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
|+||+||. .+|.||.|++..+ +..+..+--.+|.. .++..+...++..|+
T Consensus 320 R~GRaGR~-~~G~cyrL~t~~~----~~~l~~~~~PEI~r--~dL~~~~L~l~~~g~ 369 (812)
T PRK11664 320 RAGRAGRL-EPGICLHLYSKEQ----AERAAAQSEPEILH--SDLSGLLLELLQWGC 369 (812)
T ss_pred hccccCCC-CCcEEEEecCHHH----HhhCccCCCCceec--cchHHHHHHHHHcCC
Confidence 99999999 6999999998432 12233333444422 477777777776664
No 57
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.2e-41 Score=371.43 Aligned_cols=365 Identities=19% Similarity=0.239 Sum_probs=263.5
Q ss_pred HHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH
Q 010762 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (502)
Q Consensus 110 ~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (502)
++.+.+.+.+|| .|+++|+.+||.++.| +|++++||||||||++++++++... .++.++|||+||++|+.|+++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G--~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRG--KSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcC--CCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHH
Confidence 334444445899 6999999999999999 9999999999999997666655432 245689999999999999999
Q ss_pred HHHHhhcccC--ceeeEeecCCCCCccc--ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc---
Q 010762 190 VLRKMGKHTG--ITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE--- 262 (502)
Q Consensus 190 ~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~--- 262 (502)
.++.++...+ +.+.+.+++.+..... ......+.++|+|+||++|.+++... . ..++++||+||||+|+.+
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~kn 218 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKN 218 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccc
Confidence 9999887654 4444455554332211 11223345899999999998876642 1 267899999999999752
Q ss_pred -------cCCHHHHHH----HHHH-------------------hhhcCCCee-EEEEeecCChhHHHHHHHHhcCCceee
Q 010762 263 -------AGFRDDSLR----IMKD-------------------IERSSGHCQ-VLLFSATFNETVKNFVTRIVKDYNQLF 311 (502)
Q Consensus 263 -------~~~~~~~~~----i~~~-------------------l~~~~~~~q-~v~~SAT~~~~~~~~~~~~~~~~~~~~ 311 (502)
+||.+++.. +++. +...+...| .+++|||+++... ...++..+..+.
T Consensus 219 id~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~ 296 (1638)
T PRK14701 219 IDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFE 296 (1638)
T ss_pred cchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEE
Confidence 589887764 3220 101122344 6789999986311 223345555666
Q ss_pred ecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhh---HHHHHHHHHhCCCcEEEecCCCCHHH
Q 010762 312 VKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNS---ASALHKALKDFGYEVTTIMGATIQEE 388 (502)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~l~~~~~~~~ 388 (502)
+........++.+.++...... + ..+..++... +..+||||++++. |+.++..|...|+++..+||+
T Consensus 297 v~~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~----- 366 (1638)
T PRK14701 297 VGSGRSALRNIVDVYLNPEKII-K-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK----- 366 (1638)
T ss_pred ecCCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----
Confidence 6666667778888887664332 3 3444433332 4689999999875 589999999999999999995
Q ss_pred HHHHHHHHHcCCCeEEEEc----CccccCCCCCC-CCEEEEecCCCCCC-------------------------------
Q 010762 389 RDKIVKEFKDGLTQVLIST----DVLARGFDQQQ-VNLIVNYDPPVKHG------------------------------- 432 (502)
Q Consensus 389 r~~~~~~f~~~~~~iLv~T----~~~~~Gldi~~-v~~VI~~~~p~~~~------------------------------- 432 (502)
|...++.|++|+.+||||| ++++||||+|+ |++|||||+|....
T Consensus 367 R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 367 NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 8899999999999999999 58999999998 99999999998110
Q ss_pred -------------------------------------------CCCCCCccchhhhhcccccC--C--CcceEEEEeeCC
Q 010762 433 -------------------------------------------KHLEPDCEVYLHRIGRAGRF--G--RKGVVFNLLMDG 465 (502)
Q Consensus 433 -------------------------------------------~~~~~s~~~y~qr~GR~~R~--g--~~g~~~~~~~~~ 465 (502)
..+.+++.+|+|..|||.|. | -+|.+++|+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~tyiqasgrtsrl~~gg~tkgls~~~~d-- 524 (1638)
T PRK14701 447 IEGVLDVFPEDVEFLRSILKDEEVIKKVAERPFVSLKKEEGKYYIEIPDVRTYIQASGRTSRLFAGGITKGASVLIVD-- 524 (1638)
T ss_pred chhHHHhHHHHHHHHHHHhccHHHHHHhhcccceEEEEeCCeEEEEecCcccceeccchhhhccCCCcCCceEEEEec--
Confidence 00246888999999999994 3 3788998874
Q ss_pred ccHHHHHHHHHHhCC----ccccccCCHHHHHHHHHHc
Q 010762 466 DDMIIMEKIERYFDI----KVTEVRNSDEDFKAALKAA 499 (502)
Q Consensus 466 ~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~~~~~~ 499 (502)
|..++..+.+.+.+ ++.++ +..++++.++++
T Consensus 525 -~~~~~~~l~~~~~~~~~~~~~~~--~~~d~~~~~~~i 559 (1638)
T PRK14701 525 -DPEIFNALIRQMRFRFEFEFKSF--EEVDLEELIKEI 559 (1638)
T ss_pred -CHHHHHHHHHHHhhhcccceeec--cccCHHHHHHHH
Confidence 55677777777764 33333 444556666554
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.6e-41 Score=364.47 Aligned_cols=327 Identities=18% Similarity=0.210 Sum_probs=224.3
Q ss_pred EECcCCCcchhHhHHHHHhccCCC----------CCCCeEEEecCcHHHHHHHHHHHHHhhc------------ccCcee
Q 010762 145 AQARNGSGKTTCFVLGMLSRVDPN----------LKAPQALCICPTRELAIQNLEVLRKMGK------------HTGITS 202 (502)
Q Consensus 145 v~a~TGsGKTl~~l~~il~~l~~~----------~~~~~~lil~Pt~~La~q~~~~~~~~~~------------~~~~~~ 202 (502)
|+||||||||++|.+|++.++... .++.++|||+|+++|+.|+++.++.... ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999888532 2357899999999999999998865211 235666
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-ccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc-C
Q 010762 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS-S 280 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~-~ 280 (502)
...+|+...... .+.....++|+|+||++|..++.+. ...+.++++|||||+|.|.+. .+...+...+..+... .
T Consensus 81 ~vrtGDt~~~eR--~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~-kRG~~Lel~LeRL~~l~~ 157 (1490)
T PRK09751 81 GIRTGDTPAQER--SKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS-KRGAHLALSLERLDALLH 157 (1490)
T ss_pred EEEECCCCHHHH--HHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc-ccccHHHHHHHHHHHhCC
Confidence 666666544332 1223346899999999999887653 235899999999999999863 2333333344444332 2
Q ss_pred CCeeEEEEeecCChhHHHHHHHHhcC--CceeeecccccccccceEEEEecCCh------------------H-HHHHHH
Q 010762 281 GHCQVLLFSATFNETVKNFVTRIVKD--YNQLFVKKEELSLESVKQYKVYCPDE------------------L-AKVMVI 339 (502)
Q Consensus 281 ~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~k~~~l 339 (502)
.+.|+|++|||+++. .++. .++.. +..+.. ........+. ..+..... . .....+
T Consensus 158 ~~~QrIgLSATI~n~-eevA-~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v 233 (1490)
T PRK09751 158 TSAQRIGLSATVRSA-SDVA-AFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYI 233 (1490)
T ss_pred CCCeEEEEEeeCCCH-HHHH-HHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHH
Confidence 368999999999863 4433 44432 333322 2111111121 11111110 0 000011
Q ss_pred HHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCC---------------------------------CcEEEecCCCCH
Q 010762 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG---------------------------------YEVTTIMGATIQ 386 (502)
Q Consensus 340 ~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~l~~~~~~ 386 (502)
...+........++||||||+..|+.++..|++.. +.+..+||+|++
T Consensus 234 ~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 234 ETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 11223333356889999999999999999997641 125789999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccC-CCcceEEEEeeCC
Q 010762 387 EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLMDG 465 (502)
Q Consensus 387 ~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~-g~~g~~~~~~~~~ 465 (502)
++|..+.+.|++|.+++||||+.+++|||++++++||+|+.| .|+.+|+||+||+||. |..+.++++..+.
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP--------~sVas~LQRiGRAGR~~gg~s~gli~p~~r 385 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATP--------LSVASGLQRIGRAGHQVGGVSKGLFFPRTR 385 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCC--------CCHHHHHHHhCCCCCCCCCccEEEEEeCcH
Confidence 999999999999999999999999999999999999999999 8999999999999996 2334445333322
Q ss_pred ccH-HHHHHHHHHhCCcccccc
Q 010762 466 DDM-IIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 466 ~~~-~~~~~i~~~l~~~~~~~~ 486 (502)
.+. ...-.++.++...++.+.
T Consensus 386 ~dlle~~~~ve~~l~g~iE~~~ 407 (1490)
T PRK09751 386 RDLVDSAVIVECMFAGRLENLT 407 (1490)
T ss_pred HHHHhhHHHHHHHhcCCCCccC
Confidence 221 112246778888887765
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3e-41 Score=363.88 Aligned_cols=296 Identities=21% Similarity=0.235 Sum_probs=216.5
Q ss_pred HHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHH
Q 010762 112 LKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 112 ~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (502)
.+.+.+..|+ .|+|+|+.++|.++.| +|++++||||||||+ |.+|+...+.. .+++++||+||++||.|+++.+
T Consensus 68 ~~~f~~~~g~-~p~~iQ~~~i~~il~G--~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 68 EEFFKKAVGS-EPWSIQKMWAKRVLRG--DSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHhCC--CeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHH
Confidence 3334433454 6999999999999999 999999999999997 56666655432 3678999999999999999999
Q ss_pred HHhhcccCceeeE---eecCCCCCccc--ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc----
Q 010762 192 RKMGKHTGITSEC---AVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE---- 262 (502)
Q Consensus 192 ~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~---- 262 (502)
+.++...++.... .+++.+..... .......+++|+|+||++|.+++..- .. +++++|+||||+|++.
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhccccH
Confidence 9998877765432 33443322111 11122345899999999999887652 12 8999999999999873
Q ss_pred ------cCCHHH-HHHHHHHh-------------------hhcCCCee--EEEEeec-CChhHHHHHHHHhcCCceeeec
Q 010762 263 ------AGFRDD-SLRIMKDI-------------------ERSSGHCQ--VLLFSAT-FNETVKNFVTRIVKDYNQLFVK 313 (502)
Q Consensus 263 ------~~~~~~-~~~i~~~l-------------------~~~~~~~q--~v~~SAT-~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
+||.++ +..++..+ ...+..+| ++++||| +|..+.. .++.....+.+.
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~ 295 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVG 295 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEec
Confidence 578764 44443221 11122344 6779999 5655432 233444445555
Q ss_pred ccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCCh---hhHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q 010762 314 KEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTK---NSASALHKALKDFGYEVTTIMGATIQEERD 390 (502)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~---~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~ 390 (502)
.......++.+.+...... ...+...+... +.++||||+++ +.|+.++..|...|+++..+||+|++
T Consensus 296 ~~~~~~r~I~~~~~~~~~~---~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 296 GGSDTLRNVVDVYVEDEDL---KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK---- 365 (1171)
T ss_pred CccccccceEEEEEecccH---HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----
Confidence 5556667788877765432 22334433322 46799999999 99999999999999999999999973
Q ss_pred HHHHHHHcCCCeEEEE----cCccccCCCCCC-CCEEEEecCCC
Q 010762 391 KIVKEFKDGLTQVLIS----TDVLARGFDQQQ-VNLIVNYDPPV 429 (502)
Q Consensus 391 ~~~~~f~~~~~~iLv~----T~~~~~Gldi~~-v~~VI~~~~p~ 429 (502)
.+++.|++|+++|||| ||+++||||+|+ +++|||||+|.
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999999995
No 60
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=310.84 Aligned_cols=283 Identities=28% Similarity=0.397 Sum_probs=212.8
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhccc---CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCc
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKHT---GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 247 (502)
.+.++|+-|+|+|++|++..++++-.++ .++....+++.... .....+..+.+|+|+||+|+.+.+..+.+.+..
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r--~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKR--TQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhH--HHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 4568999999999999999777765543 23333444433222 223344557899999999999999999999999
Q ss_pred eEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC---CCeeEEEEeecCCh-hHHHHHHHHhcCCceeeecccccccccce
Q 010762 248 LKILVYDEADHMLDEAGFRDDSLRIMKDIERSS---GHCQVLLFSATFNE-TVKNFVTRIVKDYNQLFVKKEELSLESVK 323 (502)
Q Consensus 248 ~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~---~~~q~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (502)
++++|+||||.++.. ++.+.+..+...++... ...|.+++|||+.. ++..+..+.+.-|..+....+...+..+.
T Consensus 364 crFlvlDead~lL~q-gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQ-GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVH 442 (725)
T ss_pred eEEEEecchhhhhhc-ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhc
Confidence 999999999999974 88888888877776543 35799999999862 33444555666666666655554444443
Q ss_pred EEEEecCCh---------------------------------HHHHHHHHH---HHHHhcccCCcEEEEcCChhhHHHHH
Q 010762 324 QYKVYCPDE---------------------------------LAKVMVIRD---RIFELGEKMGQTIIFVRTKNSASALH 367 (502)
Q Consensus 324 ~~~~~~~~~---------------------------------~~k~~~l~~---~l~~~~~~~~~~lVF~~s~~~~~~l~ 367 (502)
+........ ......+.. ..........++||||.++..|..|.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 333222110 000000000 00001124578999999999999999
Q ss_pred HHHHhCC---CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhh
Q 010762 368 KALKDFG---YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLH 444 (502)
Q Consensus 368 ~~L~~~~---~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~q 444 (502)
++|.+.| +.|+++||+..+.+|.+.+++|+.++.+.|||||+++|||||.++-++||..+| .+-..|+|
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlp--------d~k~nyvh 594 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLP--------DDKTNYVH 594 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecC--------cccchhhh
Confidence 9998874 689999999999999999999999999999999999999999999999999999 77888999
Q ss_pred hhcccccCCCcceEEEEeeC
Q 010762 445 RIGRAGRFGRKGVVFNLLMD 464 (502)
Q Consensus 445 r~GR~~R~g~~g~~~~~~~~ 464 (502)
|+||+||+.+-|.+|.++..
T Consensus 595 rigrvgraermglaislvat 614 (725)
T KOG0349|consen 595 RIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhccchhhhcceeEEEeec
Confidence 99999999999999988764
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.5e-39 Score=303.03 Aligned_cols=348 Identities=18% Similarity=0.223 Sum_probs=277.4
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhh-cCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMI-LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~i-l~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
....+++.+++.+.+-|.. .|++.+.|+|..++..- ++| .|.+|.++|+||||+..-++-+..+.. .+.+.|++
T Consensus 193 r~~vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG--~nllVVSaTasGKTLIgElAGi~~~l~--~g~KmlfL 267 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEG--ENLLVVSATASGKTLIGELAGIPRLLS--GGKKMLFL 267 (830)
T ss_pred cccccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccC--CceEEEeccCCCcchHHHhhCcHHHHh--CCCeEEEE
Confidence 4467889999999988876 89999999999999774 667 999999999999999988887777653 36689999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeC
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDE 255 (502)
+|..+||+|-++.|+.--..+++.+..-+|........ .......++||||+|++-+-.+++.+ ..+.+++.||+||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999999987788888877666655443322 23344557899999999999988887 5689999999999
Q ss_pred chhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHH
Q 010762 256 ADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK 335 (502)
Q Consensus 256 ah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 335 (502)
+|.+-+. .-..-+..++..++...+..|++.+|||.-+.. +++..+-.+.. .. +..+..+..+.+++..+..|
T Consensus 347 iHtL~de-ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a~lV--~y---~~RPVplErHlvf~~~e~eK 419 (830)
T COG1202 347 IHTLEDE-ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGAKLV--LY---DERPVPLERHLVFARNESEK 419 (830)
T ss_pred eeeccch-hcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCCeeE--ee---cCCCCChhHeeeeecCchHH
Confidence 9998872 233346677888888888999999999986543 33444332222 11 33344566677788877778
Q ss_pred HHHHHHHHHHh------cccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc
Q 010762 336 VMVIRDRIFEL------GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409 (502)
Q Consensus 336 ~~~l~~~l~~~------~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 409 (502)
...+..+.... ..-.+.||||++|+..|+.++..|...|+++.++|++|+..+|..+...|..+.+.++|+|-+
T Consensus 420 ~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAA 499 (830)
T COG1202 420 WDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAA 499 (830)
T ss_pred HHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhh
Confidence 77766644332 123578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEE---ecCCCCCCCCCCCCccchhhhhcccccCC--CcceEEEEeeCCc
Q 010762 410 LARGFDQQQVNLIVN---YDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDGD 466 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~---~~~p~~~~~~~~~s~~~y~qr~GR~~R~g--~~g~~~~~~~~~~ 466 (502)
++.|+|+|.-++|+. ++.-| -|+.+|.|+.||+||-+ ..|++++++.++.
T Consensus 500 L~AGVDFPASQVIFEsLaMG~~W-------Ls~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 500 LAAGVDFPASQVIFESLAMGIEW-------LSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred hhcCCCCchHHHHHHHHHccccc-------CCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 999999996555442 45555 68999999999999976 4699999987654
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.2e-39 Score=323.09 Aligned_cols=328 Identities=17% Similarity=0.195 Sum_probs=242.9
Q ss_pred HHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 115 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 115 l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
....+|.. |+|+|..++|.++.| + |+.+.||+|||++|++|++.... .++.++|++||++||.|.++++..+
T Consensus 96 ~~R~lg~~-p~~VQ~~~~~~ll~G--~--Iae~~TGeGKTla~~lp~~~~al---~G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 96 SGRVLGQR-HFDVQLMGGLALLSG--R--LAEMQTGEGKTLTATLPAGTAAL---AGLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred HHHHhCCC-CChHHHHHHHHHhCC--C--eeeeeCCCCcHHHHHHHHHHHhh---cCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 33446766 999999999999998 6 99999999999999999997754 4678999999999999999999999
Q ss_pred hcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcCc-------------------------cCCCce
Q 010762 195 GKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK-------------------------LGFSRL 248 (502)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~-------------------------~~~~~~ 248 (502)
...+++++.+++++.... .+....++||+|+|...| .++|..+. .....+
T Consensus 168 ~~~lGlsv~~i~gg~~~~----~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~ 243 (656)
T PRK12898 168 YEALGLTVGCVVEDQSPD----ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGL 243 (656)
T ss_pred HhhcCCEEEEEeCCCCHH----HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccc
Confidence 999999999998875422 223334689999999887 44554321 123567
Q ss_pred EEEEEeCchhhhcc--------------c---CCHHHHHHHHHHhhh---------------------------------
Q 010762 249 KILVYDEADHMLDE--------------A---GFRDDSLRIMKDIER--------------------------------- 278 (502)
Q Consensus 249 ~~lVlDEah~l~~~--------------~---~~~~~~~~i~~~l~~--------------------------------- 278 (502)
.+.|+||+|.++-+ . .+-.....+...+..
T Consensus 244 ~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~ 323 (656)
T PRK12898 244 HFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPA 323 (656)
T ss_pred ceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhh
Confidence 89999999974311 0 000001111110100
Q ss_pred -----------------------c---------------CC---------------------------------------
Q 010762 279 -----------------------S---------------SG--------------------------------------- 281 (502)
Q Consensus 279 -----------------------~---------------~~--------------------------------------- 281 (502)
. ..
T Consensus 324 ~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~ 403 (656)
T PRK12898 324 WRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQR 403 (656)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHH
Confidence 0 00
Q ss_pred ----CeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEc
Q 010762 282 ----HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFV 357 (502)
Q Consensus 282 ----~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~ 357 (502)
-.++.+||||.+....++...+..++..+...... .....+.++++ ....|...+...+......+.++||||
T Consensus 404 ~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvLIft 480 (656)
T PRK12898 404 FFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFL-TAAAKWAAVAARVRELHAQGRPVLVGT 480 (656)
T ss_pred HHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 01557888888877666666665555444333322 22233334444 356677888776666554568899999
Q ss_pred CChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC---CCC-----EEEEecCCC
Q 010762 358 RTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ---QVN-----LIVNYDPPV 429 (502)
Q Consensus 358 ~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~---~v~-----~VI~~~~p~ 429 (502)
+|+..++.++..|...|+++..+||++. +|+..+..|+.+...|+||||+++||+||+ +|. +||+|++|
T Consensus 481 ~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P- 557 (656)
T PRK12898 481 RSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERH- 557 (656)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCC-
Confidence 9999999999999999999999999865 555556667666678999999999999999 666 99999999
Q ss_pred CCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 430 KHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 430 ~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
.|...|.||+||+||.|.+|.+++|++..++
T Consensus 558 -------~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 558 -------DSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred -------CCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 8899999999999999999999999987554
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.2e-40 Score=321.87 Aligned_cols=303 Identities=19% Similarity=0.253 Sum_probs=205.7
Q ss_pred cEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCC-------C--
Q 010762 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST-------N-- 212 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~-------~-- 212 (502)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.+. .+...++.... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 58999999999999999999987653 34668999999999999999999987532 11111111100 0
Q ss_pred -ccc------ccCCCCCCCeEEEeCchHHHHHHHcCc----cCC--CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc
Q 010762 213 -YVP------ISKRPPVTAQVVIGTPGTIKKWMSAKK----LGF--SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279 (502)
Q Consensus 213 -~~~------~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~~--~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~ 279 (502)
... .........+|+|+||+++...+.... ..+ -..++||+||+|.+.+. ++ ..+..++..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~-~~l~~~l~~l~~- 153 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-TL-ALILAVLEVLKD- 153 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-HH-HHHHHHHHHHHH-
Confidence 000 000011246799999999988766521 111 12378999999999863 22 235555555542
Q ss_pred CCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEe-cCChHHHHHHHHHHHHHhcccCCcEEEEcC
Q 010762 280 SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY-CPDELAKVMVIRDRIFELGEKMGQTIIFVR 358 (502)
Q Consensus 280 ~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~ 358 (502)
.+.|+++||||+|+.+..++.................. ....+.+.. ......+...+.. +......++++||||+
T Consensus 154 -~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 154 -NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLER-LLEFIKKGGKIAIIVN 230 (358)
T ss_pred -cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHH-HHHHhhCCCeEEEEEC
Confidence 36799999999998777666554322111111110000 011122211 1111223333333 2233346789999999
Q ss_pred ChhhHHHHHHHHHhCCC--cEEEecCCCCHHHHHH----HHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCC
Q 010762 359 TKNSASALHKALKDFGY--EVTTIMGATIQEERDK----IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHG 432 (502)
Q Consensus 359 s~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~----~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~ 432 (502)
+++.|+.++..|.+.+. .+..+||++++.+|.+ +++.|++|+..|||||+++++|+|++ +++||++..|
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~---- 305 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP---- 305 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC----
Confidence 99999999999988765 5999999999999976 48999999999999999999999995 8999998776
Q ss_pred CCCCCCccchhhhhcccccCCCc----ceEEEEeeCC
Q 010762 433 KHLEPDCEVYLHRIGRAGRFGRK----GVVFNLLMDG 465 (502)
Q Consensus 433 ~~~~~s~~~y~qr~GR~~R~g~~----g~~~~~~~~~ 465 (502)
+..|+||+||+||.|+. |.+++|....
T Consensus 306 ------~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 ------IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred ------HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 67899999999998753 3666666543
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.4e-39 Score=324.17 Aligned_cols=309 Identities=15% Similarity=0.151 Sum_probs=216.2
Q ss_pred CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCc
Q 010762 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (502)
Q Consensus 121 ~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (502)
...|+++|..+++.++.+ ++.++++|||+|||+++...+ ..+.. ....++||||||++|+.||.+.+.+++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~--~~~il~apTGsGKT~i~~~l~-~~~~~-~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKN--NRRLLNLPTSAGKSLIQYLLS-RYYLE-NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhc--CceEEEeCCCCCHHHHHHHHH-HHHHh-cCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 357999999999999988 889999999999999764432 22111 12348999999999999999999988754333
Q ss_pred eeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC
Q 010762 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~ 280 (502)
.+..+.++.... ...+|+|+||+++.+.... .+.++++||+||||++... .+..++..+..
T Consensus 188 ~~~~i~~g~~~~---------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~~-----~~~~il~~~~~-- 248 (501)
T PHA02558 188 AMHKIYSGTAKD---------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTGK-----SLTSIITKLDN-- 248 (501)
T ss_pred ceeEEecCcccC---------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccch-----hHHHHHHhhhc--
Confidence 333333333211 2468999999998764422 3678999999999998752 24455555543
Q ss_pred CCeeEEEEeecCChhHHHH--HHHHhcCCceeeeccccc----ccccc--eEEEE--------------------ecCCh
Q 010762 281 GHCQVLLFSATFNETVKNF--VTRIVKDYNQLFVKKEEL----SLESV--KQYKV--------------------YCPDE 332 (502)
Q Consensus 281 ~~~q~v~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~--------------------~~~~~ 332 (502)
.+++++||||++...... +...+.. ....+...+. ..... ..... .....
T Consensus 249 -~~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 249 -CKFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred -cceEEEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 568999999987532211 1111211 1111100000 00000 00000 00111
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEc-Cccc
Q 010762 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST-DVLA 411 (502)
Q Consensus 333 ~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T-~~~~ 411 (502)
..+...+...+......+.+++|||++.++++.+++.|...+.++..+||+|++.+|..+++.|+.|...||||| ++++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 223333444344444567889999999999999999999999999999999999999999999999999999998 8999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEe
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 462 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~ 462 (502)
+|+|+|++++||++.++ .|...|+||+||++|.+..+..++++
T Consensus 407 eG~Dip~ld~vIl~~p~--------~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 407 TGISIKNLHHVIFAHPS--------KSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccccccccEEEEecCC--------cchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999888 78888999999999987544433344
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-38 Score=298.12 Aligned_cols=325 Identities=22% Similarity=0.314 Sum_probs=235.5
Q ss_pred CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccC
Q 010762 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (502)
Q Consensus 120 g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (502)
+.-+++.+|.......+. +|++++.|||.|||+.+++-+..++..... ++|+++||+-|+.|.++.+.+..+...
T Consensus 12 ~~ie~R~YQ~~i~a~al~---~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 12 NTIEPRLYQLNIAAKALF---KNTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccccHHHHHHHHHHHHhh---cCeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 445688999988888887 689999999999999998888888765433 899999999999999999999887655
Q ss_pred ceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc
Q 010762 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~ 279 (502)
-.+..+.|....... ........|+|+||+.+..-+..+.+++.++.++||||||+-..+..|... .+.....
T Consensus 87 ~~i~~ltGev~p~~R---~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~V----a~~y~~~ 159 (542)
T COG1111 87 DEIAALTGEVRPEER---EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFV----AKEYLRS 159 (542)
T ss_pred hheeeecCCCChHHH---HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHH----HHHHHHh
Confidence 555566655544321 122224689999999999999999999999999999999999876544443 3333334
Q ss_pred CCCeeEEEEeecC---------------------------------------------ChhH---HHHHHHHh-------
Q 010762 280 SGHCQVLLFSATF---------------------------------------------NETV---KNFVTRIV------- 304 (502)
Q Consensus 280 ~~~~q~v~~SAT~---------------------------------------------~~~~---~~~~~~~~------- 304 (502)
..++.++++|||+ |+.+ .+.+...+
T Consensus 160 ~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L 239 (542)
T COG1111 160 AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPL 239 (542)
T ss_pred ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999993 1111 11111100
Q ss_pred cCCceeeeccc----ccc-c-------------------------------------ccceEE-----------------
Q 010762 305 KDYNQLFVKKE----ELS-L-------------------------------------ESVKQY----------------- 325 (502)
Q Consensus 305 ~~~~~~~~~~~----~~~-~-------------------------------------~~~~~~----------------- 325 (502)
.+...+..... +.. . .++..+
T Consensus 240 ~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk 319 (542)
T COG1111 240 KELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSK 319 (542)
T ss_pred HHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchH
Confidence 00000000000 000 0 000000
Q ss_pred --------------------EEecCChHHHHHHHHHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhCCCcEE-Eec-
Q 010762 326 --------------------KVYCPDELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVT-TIM- 381 (502)
Q Consensus 326 --------------------~~~~~~~~~k~~~l~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~l~- 381 (502)
...+.....|+..+...+.+.. ....++|||++.+++|+.+..+|...+..+. .+-
T Consensus 320 ~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiG 399 (542)
T COG1111 320 AAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIG 399 (542)
T ss_pred HHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEee
Confidence 0000111223444444444443 3457999999999999999999999988774 332
Q ss_pred -------CCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCC
Q 010762 382 -------GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454 (502)
Q Consensus 382 -------~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~ 454 (502)
.||+|.++.++++.|+.|.++|||||+++++|||+|.++.||+|++- +|...++||.|||||. +
T Consensus 400 Qa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpv--------pSeIR~IQR~GRTGR~-r 470 (542)
T COG1111 400 QASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPV--------PSEIRSIQRKGRTGRK-R 470 (542)
T ss_pred ccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCC--------cHHHHHHHhhCccccC-C
Confidence 47999999999999999999999999999999999999999999998 8999999999999997 8
Q ss_pred cceEEEEeeCC
Q 010762 455 KGVVFNLLMDG 465 (502)
Q Consensus 455 ~g~~~~~~~~~ 465 (502)
.|.+++|++.+
T Consensus 471 ~Grv~vLvt~g 481 (542)
T COG1111 471 KGRVVVLVTEG 481 (542)
T ss_pred CCeEEEEEecC
Confidence 99999999976
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.9e-38 Score=323.01 Aligned_cols=330 Identities=16% Similarity=0.176 Sum_probs=236.2
Q ss_pred HHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 114 ~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
+....+|. .|+++|..+++.++.| + ++.+.||+|||+++++|++.... .+..++|++||++||.|.++++..
T Consensus 70 a~~R~~g~-~p~~vQl~~~~~l~~G--~--Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 70 AAKRVLGM-RPYDVQLIGALVLHEG--N--IAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred HHHHHhCC-CCchHHHHhHHHHcCC--c--eeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHH
Confidence 33444677 5999999999999887 4 99999999999999999985443 467899999999999999999999
Q ss_pred hhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcCc------cCCCceEEEEEeCchhhhcccC--
Q 010762 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFSRLKILVYDEADHMLDEAG-- 264 (502)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~~~~lVlDEah~l~~~~~-- 264 (502)
+...+++++.+..++...... +.....++|+|+||++| .+++.... ..+..+.++|+||||.|+-+..
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~---r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~t 218 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASE---KKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQT 218 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHH---HHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCC
Confidence 999999999998887652111 11223589999999999 55554422 3467899999999998642100
Q ss_pred -------------CHHHHHHHHHHhhhc-----CCC--------------------------------------------
Q 010762 265 -------------FRDDSLRIMKDIERS-----SGH-------------------------------------------- 282 (502)
Q Consensus 265 -------------~~~~~~~i~~~l~~~-----~~~-------------------------------------------- 282 (502)
+......+...+... ...
T Consensus 219 pliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~ 298 (790)
T PRK09200 219 PLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVL 298 (790)
T ss_pred ceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 001111112111100 000
Q ss_pred -----------------------------------------------------------------eeEEEEeecCChhHH
Q 010762 283 -----------------------------------------------------------------CQVLLFSATFNETVK 297 (502)
Q Consensus 283 -----------------------------------------------------------------~q~v~~SAT~~~~~~ 297 (502)
.++.+||+|....-.
T Consensus 299 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~ 378 (790)
T PRK09200 299 FKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEK 378 (790)
T ss_pred hhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHH
Confidence 023344444432222
Q ss_pred HHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcE
Q 010762 298 NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEV 377 (502)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~ 377 (502)
++ ....+- ..+.++. ..+................|...+...+......+.++||||+|++.++.++..|...|+++
T Consensus 379 e~-~~~Y~l-~v~~IPt-~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~ 455 (790)
T PRK09200 379 EF-FEVYNM-EVVQIPT-NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPH 455 (790)
T ss_pred HH-HHHhCC-cEEECCC-CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCE
Confidence 22 221111 1222211 11111111111122344568888877676655578899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCC---CCCC-----EEEEecCCCCCCCCCCCCccchhhhhccc
Q 010762 378 TTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ---QQVN-----LIVNYDPPVKHGKHLEPDCEVYLHRIGRA 449 (502)
Q Consensus 378 ~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi---~~v~-----~VI~~~~p~~~~~~~~~s~~~y~qr~GR~ 449 (502)
..+||.+.+.++..+...+..| .|+|||++++||+|+ |+|. +||+|++| .|...|+||+||+
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p--------~s~r~y~qr~GRt 525 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERM--------ESRRVDLQLRGRS 525 (790)
T ss_pred EEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCC--------CCHHHHHHhhccc
Confidence 9999999988888877777666 799999999999999 6998 99999999 8999999999999
Q ss_pred ccCCCcceEEEEeeCCcc
Q 010762 450 GRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 450 ~R~g~~g~~~~~~~~~~~ 467 (502)
||.|.+|.++.|++..++
T Consensus 526 GR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 526 GRQGDPGSSQFFISLEDD 543 (790)
T ss_pred cCCCCCeeEEEEEcchHH
Confidence 999999999999987654
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3e-37 Score=310.42 Aligned_cols=329 Identities=17% Similarity=0.170 Sum_probs=240.7
Q ss_pred HHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHH-hccCCCCCCCeEEEecCcHHHHHHHHHHHH
Q 010762 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGML-SRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (502)
Q Consensus 114 ~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il-~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (502)
+....+|.. |+++|..+.+.++.| + ++.++||+|||++|++|++ +.+ .+..++|++||++||.|.++++.
T Consensus 48 a~~R~lg~~-p~~vQlig~~~l~~G--~--Iaem~TGeGKTLva~lpa~l~aL----~G~~V~VvTpt~~LA~qdae~~~ 118 (745)
T TIGR00963 48 ASKRVLGMR-PFDVQLIGGIALHKG--K--IAEMKTGEGKTLTATLPAYLNAL----TGKGVHVVTVNDYLAQRDAEWMG 118 (745)
T ss_pred HHHHHhCCC-ccchHHhhhhhhcCC--c--eeeecCCCccHHHHHHHHHHHHH----hCCCEEEEcCCHHHHHHHHHHHH
Confidence 333446766 999999999998877 4 9999999999999999995 554 24469999999999999999999
Q ss_pred HhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcC------ccCCCceEEEEEeCchhhhcccCC
Q 010762 193 KMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDEAGF 265 (502)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~lVlDEah~l~~~~~~ 265 (502)
.+...+++++.++.++...... .....++|+|+||++| .++++.+ .+.+..+.++|+||+|.++-+...
T Consensus 119 ~l~~~LGLsv~~i~g~~~~~~r----~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaR 194 (745)
T TIGR00963 119 QVYRFLGLSVGLILSGMSPEER----REAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEAR 194 (745)
T ss_pred HHhccCCCeEEEEeCCCCHHHH----HHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhh
Confidence 9999999999998877653321 2222489999999999 8888765 346788999999999986531000
Q ss_pred H---------------HHHHHHHHHhhhcC-----CC-------------------------------------------
Q 010762 266 R---------------DDSLRIMKDIERSS-----GH------------------------------------------- 282 (502)
Q Consensus 266 ~---------------~~~~~i~~~l~~~~-----~~------------------------------------------- 282 (502)
. .....+.+.+.... ..
T Consensus 195 tpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 195 TPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHH
Confidence 0 00001111111000 00
Q ss_pred ------------------------------------------------------------------eeEEEEeecCChhH
Q 010762 283 ------------------------------------------------------------------CQVLLFSATFNETV 296 (502)
Q Consensus 283 ------------------------------------------------------------------~q~v~~SAT~~~~~ 296 (502)
.++.+||+|.....
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 354 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE 354 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH
Confidence 02344444443332
Q ss_pred HHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc
Q 010762 297 KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 376 (502)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~ 376 (502)
.++. ...+.. .+.++. ..+..........+.....|...+...+......+.++||||+|+..++.++..|...|++
T Consensus 355 ~E~~-~iY~l~-vv~IPt-nkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~ 431 (745)
T TIGR00963 355 EEFE-KIYNLE-VVVVPT-NRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP 431 (745)
T ss_pred HHHH-HHhCCC-EEEeCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 2222 222211 111111 1111111122222334566777777777666778999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC-------CCEEEEecCCCCCCCCCCCCccchhhhhccc
Q 010762 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ-------VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRA 449 (502)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~-------v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~ 449 (502)
+..+|++ +.+|+..+..|+.+...|+|||++++||+||+. .-+||+++.| .|...|.||+||+
T Consensus 432 ~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p--------~s~ri~~q~~GRt 501 (745)
T TIGR00963 432 HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERH--------ESRRIDNQLRGRS 501 (745)
T ss_pred eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCC--------CcHHHHHHHhccc
Confidence 9999998 789999999999999999999999999999998 5599999999 8999999999999
Q ss_pred ccCCCcceEEEEeeCCccH
Q 010762 450 GRFGRKGVVFNLLMDGDDM 468 (502)
Q Consensus 450 ~R~g~~g~~~~~~~~~~~~ 468 (502)
||.|.+|.+..|++..++.
T Consensus 502 GRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 502 GRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred cCCCCCcceEEEEeccHHH
Confidence 9999999999999876553
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.5e-37 Score=313.11 Aligned_cols=329 Identities=16% Similarity=0.170 Sum_probs=228.7
Q ss_pred hhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 117 ~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
..+|. .|+++|..+...+..| .++.++||+|||++|++|++.... .+..++|++|+++||.|+++++..+..
T Consensus 65 R~lgl-rpydVQlig~l~l~~G----~Iaem~TGeGKTLta~Lpa~l~aL---~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 65 RVLGM-FPYDVQVLGAIVLHQG----NIAEMKTGEGKTLTATMPLYLNAL---TGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred hhcCC-CccHHHHHHHHHhcCC----ceeEecCCcchHHHHHHHHHHHhh---cCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 33666 5777777776665544 699999999999999999876554 345699999999999999999999999
Q ss_pred ccCceeeEeecCCCC-CcccccCCCCCCCeEEEeCchHH-HHHHHc------CccCCCceEEEEEeCchhhhcccC----
Q 010762 197 HTGITSECAVPTDST-NYVPISKRPPVTAQVVIGTPGTI-KKWMSA------KKLGFSRLKILVYDEADHMLDEAG---- 264 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~------~~~~~~~~~~lVlDEah~l~~~~~---- 264 (502)
.+|+++.+.+++... ......+....+++|+++||++| .+++.. ....+..+.++|+||||.|+-+..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 999998877655221 12111222334699999999999 555533 234477899999999999753200
Q ss_pred -----------CHHHHHHHHHHhhhcC-----CC----------------------------------------------
Q 010762 265 -----------FRDDSLRIMKDIERSS-----GH---------------------------------------------- 282 (502)
Q Consensus 265 -----------~~~~~~~i~~~l~~~~-----~~---------------------------------------------- 282 (502)
+......+.+.+.... ..
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 0011111122111100 00
Q ss_pred ---------------------------------------------------------------eeEEEEeecCChhHHHH
Q 010762 283 ---------------------------------------------------------------CQVLLFSATFNETVKNF 299 (502)
Q Consensus 283 ---------------------------------------------------------------~q~v~~SAT~~~~~~~~ 299 (502)
.++.+||+|......++
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 13345555543333333
Q ss_pred HHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEE
Q 010762 300 VTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTT 379 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~ 379 (502)
.. ..+. ..+.++. ..+..........+.....|...+...+......+.++||||+|++.++.++..|...|+++..
T Consensus 377 ~~-iY~l-~v~~IPt-~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~ 453 (762)
T TIGR03714 377 IE-TYSL-SVVKIPT-NKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNL 453 (762)
T ss_pred HH-HhCC-CEEEcCC-CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEE
Confidence 22 2221 1122211 1111111111122334566888887777766667899999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC---------CCCEEEEecCCCCCCCCCCCCccchhhhhcccc
Q 010762 380 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ---------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450 (502)
Q Consensus 380 l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~---------~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~ 450 (502)
+||.+.+.++..+...|+.| .|+|||++++||+|++ ++.+|++|++| .... ++||+||+|
T Consensus 454 L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~p--------s~ri-d~qr~GRtG 522 (762)
T TIGR03714 454 LNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERME--------NSRV-DLQLRGRSG 522 (762)
T ss_pred ecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCC--------CcHH-HHHhhhccc
Confidence 99999998888877766666 7999999999999999 99999999999 4444 499999999
Q ss_pred cCCCcceEEEEeeCCcc
Q 010762 451 RFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 451 R~g~~g~~~~~~~~~~~ 467 (502)
|.|.+|.++.|++..++
T Consensus 523 RqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 523 RQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCCCceeEEEEEccchh
Confidence 99999999999987654
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=320.04 Aligned_cols=346 Identities=21% Similarity=0.201 Sum_probs=252.0
Q ss_pred CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 107 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
+.+.+.+-+.. .++....|-|+.++...+.+ ++|+++++|||||||+.+++.+++.+... +.++++|||+++||.+
T Consensus 16 ~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~-~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~E 91 (766)
T COG1204 16 LDDRVLEILKG-DGIDELFNPQQEAVEKGLLS-DENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEE 91 (766)
T ss_pred ccHHHHHHhcc-CChHHhhHHHHHHhhccccC-CCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHH
Confidence 45566665554 78878888888888776655 49999999999999999999999998654 5689999999999999
Q ss_pred HHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCH
Q 010762 187 NLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFR 266 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~ 266 (502)
.++.++ ....+|+++....|+..... ....+++|+|+||+++..++++....+..+++||+||+|.+.+. .-.
T Consensus 92 k~~~~~-~~~~~GirV~~~TgD~~~~~-----~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~-~RG 164 (766)
T COG1204 92 KYEEFS-RLEELGIRVGISTGDYDLDD-----ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR-TRG 164 (766)
T ss_pred HHHHhh-hHHhcCCEEEEecCCcccch-----hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc-ccC
Confidence 999999 44566888888877764332 12235899999999999988886666889999999999998874 234
Q ss_pred HHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhc-CCceeeeccc-ccccccceEEEEecCCh-----HHHHHHH
Q 010762 267 DDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK-DYNQLFVKKE-ELSLESVKQYKVYCPDE-----LAKVMVI 339 (502)
Q Consensus 267 ~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~k~~~l 339 (502)
..+..++..+.......|++++|||+|+.. + +..+++ ++........ -.......+........ .......
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~~-e-vA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNAE-E-VADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCHH-H-HHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 456667777777766789999999998543 2 222222 2111111111 11111111222221111 1233444
Q ss_pred HHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-------------------------------------CCcEEEecC
Q 010762 340 RDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-------------------------------------GYEVTTIMG 382 (502)
Q Consensus 340 ~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l~~ 382 (502)
..++......++.+||||+|+..+...++.|+.. -..+..+|+
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 4556667778999999999999999999988730 123678999
Q ss_pred CCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE----ecCCCCCCCCCCCCccchhhhhcccccCC--Ccc
Q 010762 383 ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKG 456 (502)
Q Consensus 383 ~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~----~~~p~~~~~~~~~s~~~y~qr~GR~~R~g--~~g 456 (502)
+++..+|.-+.+.|+.|.++||+||..++.|+|+|.-..||- |+. . .+ ....++-+|+|+.|||||-| ..|
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~-~-~g-~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDP-K-GG-IVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcC-C-CC-eEECchhhHhhccCcCCCCCcCCCC
Confidence 999999999999999999999999999999999997766663 443 1 12 33467899999999999987 457
Q ss_pred eEEEEeeCCccH
Q 010762 457 VVFNLLMDGDDM 468 (502)
Q Consensus 457 ~~~~~~~~~~~~ 468 (502)
.++++..+.++.
T Consensus 400 ~~~i~~~~~~~~ 411 (766)
T COG1204 400 EAIILATSHDEL 411 (766)
T ss_pred cEEEEecCccch
Confidence 777777544443
No 70
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.4e-36 Score=322.49 Aligned_cols=327 Identities=18% Similarity=0.235 Sum_probs=221.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH----HHHHHHHHHHHH-hhcccCceeeEeecCCCCCccc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR----ELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVP 215 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~----~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 215 (502)
+.++++|+||||||. .+|.+...........+++..|+| +||.++.+.+.. ++...|+ .+.
T Consensus 90 ~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY----~vr-------- 155 (1294)
T PRK11131 90 QVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY----KVR-------- 155 (1294)
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece----eec--------
Confidence 789999999999999 467443322222223455566865 566666665553 3322222 111
Q ss_pred ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh-hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh
Q 010762 216 ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH-MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE 294 (502)
Q Consensus 216 ~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~-l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~ 294 (502)
.......+++|+|+|||+|++++..+.. +.++++|||||||. +++ .+|.. .+++.+....++.|+|+||||++.
T Consensus 156 f~~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn-~DfLL---g~Lk~lL~~rpdlKvILmSATid~ 230 (1294)
T PRK11131 156 FNDQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLN-IDFIL---GYLKELLPRRPDLKVIITSATIDP 230 (1294)
T ss_pred CccccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccc-cchHH---HHHHHhhhcCCCceEEEeeCCCCH
Confidence 1122234689999999999999987654 89999999999994 665 46653 233444333457899999999974
Q ss_pred hHHHHHHHHhcCCceeeecccccccccceEEEEecCCh-----HHHHHHHHHHHHHh-cccCCcEEEEcCChhhHHHHHH
Q 010762 295 TVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE-----LAKVMVIRDRIFEL-GEKMGQTIIFVRTKNSASALHK 368 (502)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~k~~~l~~~l~~~-~~~~~~~lVF~~s~~~~~~l~~ 368 (502)
. .+... +.+...+.+.... ..+...+...... ...+..+...+... ....+.+|||+++..+++.+++
T Consensus 231 e--~fs~~-F~~apvI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae 304 (1294)
T PRK11131 231 E--RFSRH-FNNAPIIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTAD 304 (1294)
T ss_pred H--HHHHH-cCCCCEEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHH
Confidence 3 44443 3333334443322 2344455444221 12223333322222 2356889999999999999999
Q ss_pred HHHhCCCc---EEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCC-------CCCCCC---
Q 010762 369 ALKDFGYE---VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV-------KHGKHL--- 435 (502)
Q Consensus 369 ~L~~~~~~---~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~-------~~~~~~--- 435 (502)
.|...++. +..+||+|++.+|..+++. .|..+|||||+++++|||+|+|++||+++... .+...+
T Consensus 305 ~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~ 382 (1294)
T PRK11131 305 ALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIE 382 (1294)
T ss_pred HHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCee
Confidence 99987764 7899999999999999886 47789999999999999999999999987421 111122
Q ss_pred CCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHHHHHHHHHcCC
Q 010762 436 EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALKAAGL 501 (502)
Q Consensus 436 ~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
+.|.++|.||+||+||. ++|.||.||+..+ +..+.++...+|.+. ++..+...|+.+|+
T Consensus 383 ~iSkasa~QRaGRAGR~-~~G~c~rLyte~d----~~~~~~~~~PEIlR~--~L~~viL~lk~lgl 441 (1294)
T PRK11131 383 PISQASANQRKGRCGRV-SEGICIRLYSEDD----FLSRPEFTDPEILRT--NLASVILQMTALGL 441 (1294)
T ss_pred ecCHhhHhhhccccCCC-CCcEEEEeCCHHH----HHhhhcccCCccccC--CHHHHHHHHHHcCC
Confidence 24567899999999999 6999999998432 233445556666544 89999999988875
No 71
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.7e-38 Score=284.95 Aligned_cols=336 Identities=18% Similarity=0.243 Sum_probs=241.5
Q ss_pred HHHHHHHhhCCCCC-CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHH
Q 010762 110 ELLKGLYVEMKFQK-PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (502)
Q Consensus 110 ~l~~~l~~~~g~~~-p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (502)
.+.+.|++.||+.. -++.|.+|+..+..++ +|+.|++|||+||++||.+|.|- .+...||+.|..+|.....
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k-~DVyVsMPTGaGKSLCyQLPaL~------~~gITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRK-CDVYVSMPTGAGKSLCYQLPALV------HGGITIVISPLIALIKDQI 78 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhcc-CcEEEeccCCCchhhhhhchHHH------hCCeEEEehHHHHHHHHHH
Confidence 45567777788886 5899999999999885 89999999999999999999984 4458899999999999999
Q ss_pred HHHHHhhcccCceeeEeecCCCCCcc----cccCCCCCCCeEEEeCchHHH-----HHHHcCccCCCceEEEEEeCchhh
Q 010762 189 EVLRKMGKHTGITSECAVPTDSTNYV----PISKRPPVTAQVVIGTPGTIK-----KWMSAKKLGFSRLKILVYDEADHM 259 (502)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ilv~Tp~~l~-----~~l~~~~~~~~~~~~lVlDEah~l 259 (502)
+.+.++--. +..+..-.+.... ...........|++.||+... .+|.. -.+-..+.++|+||||++
T Consensus 79 DHL~~LKVp----~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 79 DHLKRLKVP----CESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEAHCV 153 (641)
T ss_pred HHHHhcCCc----hhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechhhhH
Confidence 988876321 1111111111110 011122234579999998742 22221 122345889999999999
Q ss_pred hcc-cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHh--cCCceeeecccccccccce---EEEEecCChH
Q 010762 260 LDE-AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIV--KDYNQLFVKKEELSLESVK---QYKVYCPDEL 333 (502)
Q Consensus 260 ~~~-~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 333 (502)
..+ +.|++.+..+ ..++...+....+++|||.+..+++.+..-+ .+|..++..+. ...++. ++...+.
T Consensus 154 SQWGHDFRPDYL~L-G~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~--FR~NLFYD~~~K~~I~--- 227 (641)
T KOG0352|consen 154 SQWGHDFRPDYLTL-GSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT--FRDNLFYDNHMKSFIT--- 227 (641)
T ss_pred hhhccccCcchhhh-hhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc--hhhhhhHHHHHHHHhh---
Confidence 874 5688887764 4445555578899999999998877665543 34443332111 111100 0000000
Q ss_pred HHHHHHHHHHHHhcc-----------cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCe
Q 010762 334 AKVMVIRDRIFELGE-----------KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 402 (502)
Q Consensus 334 ~k~~~l~~~l~~~~~-----------~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 402 (502)
.-+..|.+.-...+. ..+-.||||.|+++|+.++-.|...|+++..+|.++...+|..+.+.|.++++.
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 111122221111111 235679999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHH
Q 010762 403 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472 (502)
Q Consensus 403 iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 472 (502)
|++||..+++|+|-|+|++||||++| .++..|.|-.||+||.|....|-++|.- .|..-+.
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~--------qn~AgYYQESGRAGRDGk~SyCRLYYsR-~D~~~i~ 368 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPS--------QNLAGYYQESGRAGRDGKRSYCRLYYSR-QDKNALN 368 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCch--------hhhHHHHHhccccccCCCccceeeeecc-cchHHHH
Confidence 99999999999999999999999999 8999999999999999999999988874 4444433
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.8e-36 Score=289.06 Aligned_cols=301 Identities=15% Similarity=0.175 Sum_probs=197.6
Q ss_pred HHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc----Ccee
Q 010762 127 IQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT----GITS 202 (502)
Q Consensus 127 ~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~----~~~~ 202 (502)
+|.++++.+..++..+++++||||||||++|++|++.. ..++++++|+++|+.|+++.++.+.... +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999999843458999999999999999999842 3468999999999999999988876432 3333
Q ss_pred eEeecCCCCC---cc----ccc-----------CCCCCCCeEEEeCchHHHHHHHcCc--------cCCCceEEEEEeCc
Q 010762 203 ECAVPTDSTN---YV----PIS-----------KRPPVTAQVVIGTPGTIKKWMSAKK--------LGFSRLKILVYDEA 256 (502)
Q Consensus 203 ~~~~~~~~~~---~~----~~~-----------~~~~~~~~Ilv~Tp~~l~~~l~~~~--------~~~~~~~~lVlDEa 256 (502)
....+..... .. ... ......++|++|||+.|..++.... ..+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 3333321111 00 000 0012357899999999977654311 02578999999999
Q ss_pred hhhhcccC-CHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHH--hcCCceeeeccc----c------c------
Q 010762 257 DHMLDEAG-FRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI--VKDYNQLFVKKE----E------L------ 317 (502)
Q Consensus 257 h~l~~~~~-~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~----~------~------ 317 (502)
|.+..... +.......+..+.......+++++|||+++.+...+... +..+........ . .
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 99764211 111111222222211124689999999998877776654 332221111110 0 0
Q ss_pred --ccccceEEEEecCC-hHHHHHHHHHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhCC--CcEEEecCCCCHHHHH
Q 010762 318 --SLESVKQYKVYCPD-ELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFG--YEVTTIMGATIQEERD 390 (502)
Q Consensus 318 --~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~l~~~~~~~~r~ 390 (502)
....+.+.+..... ....+..+.+.+.+.. ..++++||||+|+..++.++..|+..+ +.+..+||.+++.+|.
T Consensus 235 ~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~ 314 (357)
T TIGR03158 235 RPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRE 314 (357)
T ss_pred ceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHH
Confidence 01233333333111 1111222223232222 256799999999999999999999864 5788999999999887
Q ss_pred HHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccc
Q 010762 391 KIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAG 450 (502)
Q Consensus 391 ~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~ 450 (502)
++ ++..|||||++++||||++.+ +|| ++ | .+...|+||+||+|
T Consensus 315 ~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p--------~~~~~yiqR~GR~g 357 (357)
T TIGR03158 315 RA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-A--------RDAAAFWQRLGRLG 357 (357)
T ss_pred Hh------ccCCEEEEecHHhcccCCCCc-eEE-EC-C--------CCHHHHhhhcccCC
Confidence 54 377899999999999999986 666 55 6 67899999999997
No 73
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.9e-35 Score=316.27 Aligned_cols=326 Identities=22% Similarity=0.290 Sum_probs=231.6
Q ss_pred CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccC
Q 010762 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (502)
Q Consensus 120 g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (502)
+.-.|+++|..++..++. +++++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.++++....+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~---~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALK---KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhc---CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 445689999999998887 48999999999999999998887773 3456899999999999999999998765443
Q ss_pred ceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc
Q 010762 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS 279 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~ 279 (502)
..+..+.+...... ......+++|+|+||+.+...+....+.+.++++|||||||++....++. .+...+...
T Consensus 87 ~~v~~~~g~~~~~~---r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~----~i~~~~~~~ 159 (773)
T PRK13766 87 EKIVVFTGEVSPEK---RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYV----YIAERYHED 159 (773)
T ss_pred ceEEEEeCCCCHHH---HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHH----HHHHHHHhc
Confidence 44544554433221 11112347899999999988887777788899999999999988643332 233333333
Q ss_pred CCCeeEEEEeecCChhH---HHHHHHHhcCCceeeecc------------------------------------------
Q 010762 280 SGHCQVLLFSATFNETV---KNFVTRIVKDYNQLFVKK------------------------------------------ 314 (502)
Q Consensus 280 ~~~~q~v~~SAT~~~~~---~~~~~~~~~~~~~~~~~~------------------------------------------ 314 (502)
....++++||||+.... ...+..+......+....
T Consensus 160 ~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l 239 (773)
T PRK13766 160 AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKL 239 (773)
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999963221 111111110000000000
Q ss_pred --------cc--ccc-------ccceEE----------------------------------------------------
Q 010762 315 --------EE--LSL-------ESVKQY---------------------------------------------------- 325 (502)
Q Consensus 315 --------~~--~~~-------~~~~~~---------------------------------------------------- 325 (502)
.. ... ..+...
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~ 319 (773)
T PRK13766 240 KELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGG 319 (773)
T ss_pred HHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCC
Confidence 00 000 000000
Q ss_pred -------------------EEecCChHHHHHHHHHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCC-
Q 010762 326 -------------------KVYCPDELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA- 383 (502)
Q Consensus 326 -------------------~~~~~~~~~k~~~l~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~- 383 (502)
...+.....|...+.+.+.... ....++||||+++..|..+++.|...++.+..+||.
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~ 399 (773)
T PRK13766 320 SKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQA 399 (773)
T ss_pred cHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccc
Confidence 0000011123334444343332 467899999999999999999999999999999986
Q ss_pred -------CCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc
Q 010762 384 -------TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456 (502)
Q Consensus 384 -------~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g 456 (502)
|++.+|..++++|++|..++||||+++++|+|+|++++||+||+| .+...|+||+||+||.| .|
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~--------~s~~r~iQR~GR~gR~~-~~ 470 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPV--------PSEIRSIQRKGRTGRQE-EG 470 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCC--------CCHHHHHHHhcccCcCC-CC
Confidence 999999999999999999999999999999999999999999999 67888999999999986 58
Q ss_pred eEEEEeeCCc
Q 010762 457 VVFNLLMDGD 466 (502)
Q Consensus 457 ~~~~~~~~~~ 466 (502)
.++.++..+.
T Consensus 471 ~v~~l~~~~t 480 (773)
T PRK13766 471 RVVVLIAKGT 480 (773)
T ss_pred EEEEEEeCCC
Confidence 8888887543
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.9e-36 Score=309.29 Aligned_cols=334 Identities=20% Similarity=0.217 Sum_probs=252.6
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHH
Q 010762 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (502)
Q Consensus 109 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (502)
+++...+...||+..++|-|.++|..++.| +|+++.+|||.||++||.+|++ ..++..|||.|..+|.+.+.
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~G--kd~fvlmpTG~GKSLCYQlPA~------l~~gitvVISPL~SLm~DQv 321 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSG--KDCFVLMPTGGGKSLCYQLPAL------LLGGVTVVISPLISLMQDQV 321 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcC--CceEEEeecCCceeeEeecccc------ccCCceEEeccHHHHHHHHH
Confidence 356666666799999999999999999999 9999999999999999999998 34558999999999998877
Q ss_pred HHHHHhhcccCceeeEeecCCCCCc--ccccCCCC--CCCeEEEeCchHHHHHHHc--CccCCCc---eEEEEEeCchhh
Q 010762 189 EVLRKMGKHTGITSECAVPTDSTNY--VPISKRPP--VTAQVVIGTPGTIKKWMSA--KKLGFSR---LKILVYDEADHM 259 (502)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~Ilv~Tp~~l~~~l~~--~~~~~~~---~~~lVlDEah~l 259 (502)
..+... ++...++.+...... ........ ...+|++-||+++...-.- ....+.. +.++|+||||++
T Consensus 322 ~~L~~~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 322 THLSKK----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred Hhhhhc----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 766332 444444444443321 11111222 3579999999987532211 1112333 889999999999
Q ss_pred hcc-cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 260 LDE-AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 260 ~~~-~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
..+ +.|++.+..+.....+. +...++++|||.+..+..-+...+........... ....++...+ ...........
T Consensus 398 SqWgHdFRp~Yk~l~~l~~~~-~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s-fnR~NL~yeV-~~k~~~~~~~~ 474 (941)
T KOG0351|consen 398 SQWGHDFRPSYKRLGLLRIRF-PGVPFIALTATATERVREDVIRSLGLRNPELFKSS-FNRPNLKYEV-SPKTDKDALLD 474 (941)
T ss_pred hhhcccccHHHHHHHHHHhhC-CCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-CCCCCceEEE-EeccCccchHH
Confidence 984 55777777665544443 45889999999999988877777665444332221 2222222222 21111122222
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~ 418 (502)
+.. ..........+||||.++.+|+.++..|+..++.+..||++|+..+|..+...|..++++|++||=++++|||.|+
T Consensus 475 ~~~-~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 475 ILE-ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHH-HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 222 2334457889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
|+.||||++| .|++.|+|-+||+||.|....|++|+...+
T Consensus 554 VR~ViH~~lP--------ks~E~YYQE~GRAGRDG~~s~C~l~y~~~D 593 (941)
T KOG0351|consen 554 VRFVIHYSLP--------KSFEGYYQEAGRAGRDGLPSSCVLLYGYAD 593 (941)
T ss_pred eeEEEECCCc--------hhHHHHHHhccccCcCCCcceeEEecchhH
Confidence 9999999999 899999999999999999999999998764
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.6e-35 Score=307.31 Aligned_cols=355 Identities=23% Similarity=0.261 Sum_probs=261.6
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHH
Q 010762 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (502)
Q Consensus 109 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (502)
..+...+.+ .|+..++++|.+|+..+.+| +|++|..+||||||.+|++||++++...... ++|+|.||++||+.+.
T Consensus 57 ~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G--~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~ 132 (851)
T COG1205 57 ESLKSALVK-AGIERLYSHQVDALRLIREG--RNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQA 132 (851)
T ss_pred hHHHHHHHH-hccccccHHHHHHHHHHHCC--CCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHH
Confidence 334666665 78888999999999999999 9999999999999999999999999876655 8999999999999999
Q ss_pred HHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC----ccCCCceEEEEEeCchhhhcccC
Q 010762 189 EVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK----KLGFSRLKILVYDEADHMLDEAG 264 (502)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~----~~~~~~~~~lVlDEah~l~~~~~ 264 (502)
+.++++....+..+.....++..............++|++|||.+|..++... .+.+.++++||+||+|.+-. .
T Consensus 133 ~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG--v 210 (851)
T COG1205 133 ERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG--V 210 (851)
T ss_pred HHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc--c
Confidence 99999998888333333323222222221234557899999999998855432 23567899999999998765 4
Q ss_pred CHHHHHHHHHHhh----hcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCC-----h---
Q 010762 265 FRDDSLRIMKDIE----RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD-----E--- 332 (502)
Q Consensus 265 ~~~~~~~i~~~l~----~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--- 332 (502)
|...+..+++++. ....+.|+|+.|||+...- ++...++.......+ ...........+....+. .
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v-~~~g~~~~~~~~~~~~p~~~~~~~~~r 288 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPV-DEDGSPRGLRYFVRREPPIRELAESIR 288 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeec-cCCCCCCCceEEEEeCCcchhhhhhcc
Confidence 5555555555444 3445789999999986543 445555554444332 223333334444444441 0
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHH----HHHHhCC----CcEEEecCCCCHHHHHHHHHHHHcCCCeEE
Q 010762 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH----KALKDFG----YEVTTIMGATIQEERDKIVKEFKDGLTQVL 404 (502)
Q Consensus 333 ~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~----~~L~~~~----~~~~~l~~~~~~~~r~~~~~~f~~~~~~iL 404 (502)
..+.......+......+-++|+|+.++..++.++ ..+...+ ..+..++++|...+|.++...|+.|+..++
T Consensus 289 ~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~ 368 (851)
T COG1205 289 RSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGV 368 (851)
T ss_pred cchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEE
Confidence 12222333333344557889999999999999997 4444444 678999999999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEecCCCCCCCCCCC-CccchhhhhcccccCCCcceEEEEeeC-CccHHHHHHHHHHhC
Q 010762 405 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEP-DCEVYLHRIGRAGRFGRKGVVFNLLMD-GDDMIIMEKIERYFD 479 (502)
Q Consensus 405 v~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~-s~~~y~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~i~~~l~ 479 (502)
++|+.+.-|+|+.+++.||.++.| . +..++.||.||+||.++.+..+..... .-|..+...-+.++.
T Consensus 369 ~st~AlelgidiG~ldavi~~g~P--------~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 369 IATNALELGIDIGSLDAVIAYGYP--------GVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred ecchhhhhceeehhhhhHhhcCCC--------CchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999 5 789999999999999866655544432 224566666666665
No 76
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=287.64 Aligned_cols=324 Identities=21% Similarity=0.284 Sum_probs=224.8
Q ss_pred CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccC
Q 010762 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (502)
Q Consensus 120 g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (502)
+...++++|......+| | +|+||++|||+|||+++...+++++....+ .++++++|++-|+.|....+..++....
T Consensus 59 ~~~~lR~YQ~eivq~AL-g--kNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-G--KNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred CcccccHHHHHHhHHhh-c--CCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 45568899999999999 8 999999999999999999999999877655 6999999999999999977777765532
Q ss_pred ceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccC-CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 200 ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLG-FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~-~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
. ....++....... ......++|+|+||+.+..-|.+.... ++.+.++||||||+-..+..|...+..++..-..
T Consensus 135 ~--T~~l~~~~~~~~r--~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 135 V--TGQLGDTVPRSNR--GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred c--eeeccCccCCCch--hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 2 2233332221111 123335799999999998888775543 5899999999999998876666655444443322
Q ss_pred cCCCeeEEEEeecCChhHHH--------------------------------------------------HHHHHhcCCc
Q 010762 279 SSGHCQVLLFSATFNETVKN--------------------------------------------------FVTRIVKDYN 308 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~~~~~--------------------------------------------------~~~~~~~~~~ 308 (502)
..|++++|||+...... ++..++....
T Consensus 211 ---~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~ 287 (746)
T KOG0354|consen 211 ---GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQ 287 (746)
T ss_pred ---cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 34999999995322111 1111110000
Q ss_pred ---eeeecc------------cccccc--------------------------cce---------EEE------------
Q 010762 309 ---QLFVKK------------EELSLE--------------------------SVK---------QYK------------ 326 (502)
Q Consensus 309 ---~~~~~~------------~~~~~~--------------------------~~~---------~~~------------ 326 (502)
.+.... ...... .+. .++
T Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~ 367 (746)
T KOG0354|consen 288 EEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLE 367 (746)
T ss_pred hcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHH
Confidence 000000 000000 000 000
Q ss_pred --------------------EecCChHHHHHHHHHHHHHh--cccCCcEEEEcCChhhHHHHHHHHHh---CCCcEEEec
Q 010762 327 --------------------VYCPDELAKVMVIRDRIFEL--GEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIM 381 (502)
Q Consensus 327 --------------------~~~~~~~~k~~~l~~~l~~~--~~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~l~ 381 (502)
...+.+..|+..+.+.+.+. ..+..++||||.++..|..|...|.. .+++...+-
T Consensus 368 ~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fi 447 (746)
T KOG0354|consen 368 LEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFI 447 (746)
T ss_pred hcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceee
Confidence 00000122333333333332 23456899999999999999999873 244444443
Q ss_pred C--------CCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC
Q 010762 382 G--------ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 453 (502)
Q Consensus 382 ~--------~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g 453 (502)
| +|++.++.++++.|+.|.++|||||+++++|||++.++.||.||.. .|+...+||.|| ||+
T Consensus 448 Gq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~--------snpIrmIQrrGR-gRa- 517 (746)
T KOG0354|consen 448 GQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYS--------SNPIRMVQRRGR-GRA- 517 (746)
T ss_pred eccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCC--------ccHHHHHHHhcc-ccc-
Confidence 3 8999999999999999999999999999999999999999999999 788899999999 998
Q ss_pred CcceEEEEeeC
Q 010762 454 RKGVVFNLLMD 464 (502)
Q Consensus 454 ~~g~~~~~~~~ 464 (502)
+.|.|+++++.
T Consensus 518 ~ns~~vll~t~ 528 (746)
T KOG0354|consen 518 RNSKCVLLTTG 528 (746)
T ss_pred cCCeEEEEEcc
Confidence 68999988883
No 77
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.3e-34 Score=302.95 Aligned_cols=331 Identities=18% Similarity=0.189 Sum_probs=222.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh-hcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM-GKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+.++++|+||||||.. +|.+..-.......++++..|+|..|..++..+... +...|..+.+.+... ..
T Consensus 83 ~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~--------~~ 152 (1283)
T TIGR01967 83 QVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH--------DQ 152 (1283)
T ss_pred ceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC--------cc
Confidence 7899999999999995 565543222223346777789999888888766553 333333333322221 22
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh-hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH-MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKN 298 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~-l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~ 298 (502)
....+.|.|+|+|.|++.+..+.. +.++++|||||||. .++ .+|.. .+++.+....++.|+|+||||++. ..
T Consensus 153 ~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~-~D~LL---~lLk~il~~rpdLKlIlmSATld~--~~ 225 (1283)
T TIGR01967 153 VSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLN-IDFLL---GYLKQLLPRRPDLKIIITSATIDP--ER 225 (1283)
T ss_pred cCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhcc-chhHH---HHHHHHHhhCCCCeEEEEeCCcCH--HH
Confidence 234578999999999999887654 89999999999994 665 34533 233333334457899999999974 33
Q ss_pred HHHHHhcCCceeeecccccccccceEEEEecCCh-----HHHHHHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHh
Q 010762 299 FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE-----LAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKD 372 (502)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~k~~~l~~~l~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~ 372 (502)
+. .++.+...+.+..... .+...|...... ..+...+...+.... ...+.+|||+++..+++.+++.|..
T Consensus 226 fa-~~F~~apvI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~ 301 (1283)
T TIGR01967 226 FS-RHFNNAPIIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRK 301 (1283)
T ss_pred HH-HHhcCCCEEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHh
Confidence 33 3444333343332222 233333332211 122233333233222 2468999999999999999999987
Q ss_pred CC---CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCC-------C---CCCCc
Q 010762 373 FG---YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK-------H---LEPDC 439 (502)
Q Consensus 373 ~~---~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~-------~---~~~s~ 439 (502)
.+ +.+..+||+|++.+|..++..+ +..+|||||+++++|||+|+|++||+++++..... . .+.|.
T Consensus 302 ~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISk 379 (1283)
T TIGR01967 302 RNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQ 379 (1283)
T ss_pred cCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCH
Confidence 64 4588999999999999986654 24689999999999999999999999997642211 1 13466
Q ss_pred cchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHHHHHHHHHcCC
Q 010762 440 EVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALKAAGL 501 (502)
Q Consensus 440 ~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
++|.||+||+||.| +|.||.|++..+. .....+-..+|.. .++..+...|+..|+
T Consensus 380 asa~QRaGRAGR~~-~G~cyRLyte~~~----~~~~~~~~PEIlR--~~L~~viL~l~~lg~ 434 (1283)
T TIGR01967 380 ASANQRKGRCGRVA-PGICIRLYSEEDF----NSRPEFTDPEILR--TNLASVILQMLALRL 434 (1283)
T ss_pred HHHHHHhhhhCCCC-CceEEEecCHHHH----HhhhhccCccccc--ccHHHHHHHHHhcCC
Confidence 89999999999997 9999999984321 2233444455544 478888888887764
No 78
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=288.91 Aligned_cols=334 Identities=21% Similarity=0.267 Sum_probs=242.9
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC-------CCCCCeEEEecCcHHHHHHHHHH
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-------NLKAPQALCICPTRELAIQNLEV 190 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-------~~~~~~~lil~Pt~~La~q~~~~ 190 (502)
.++|..++.+|+.++|.++..+ .|++||||||||||..|++.|+..+.. .....++++|+|+++||..+++.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~Sn-eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSN-ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCC-CCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 3789999999999999999875 899999999999999999999988853 22466899999999999999999
Q ss_pred HHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc----cCCCceEEEEEeCchhhhcccCCH
Q 010762 191 LRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK----LGFSRLKILVYDEADHMLDEAGFR 266 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~----~~~~~~~~lVlDEah~l~~~~~~~ 266 (502)
+.+-....|+.+.-+.|+....... ...|+|+|+||+++ +.+.+.. ..++.+++||+||+|.+-++.|
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te-----i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RG-- 255 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE-----IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRG-- 255 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH-----HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCccc--
Confidence 8888777888888887776444322 23589999999995 3343321 2367899999999999988654
Q ss_pred HHHHHHHHHhh----hcCCCeeEEEEeecCChhHHHHHHHHhcC--CceeeecccccccccceEEEEecCCh---H---H
Q 010762 267 DDSLRIMKDIE----RSSGHCQVLLFSATFNETVKNFVTRIVKD--YNQLFVKKEELSLESVKQYKVYCPDE---L---A 334 (502)
Q Consensus 267 ~~~~~i~~~l~----~~~~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~ 334 (502)
..+..|+.++. ......+++++|||+|.-. + +..++.- +..+..-.....+..+.+.++-+... . .
T Consensus 256 pvlEtiVaRtlr~vessqs~IRivgLSATlPN~e-D-vA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~ 333 (1230)
T KOG0952|consen 256 PVLETIVARTLRLVESSQSMIRIVGLSATLPNYE-D-VARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKN 333 (1230)
T ss_pred chHHHHHHHHHHHHHhhhhheEEEEeeccCCCHH-H-HHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhh
Confidence 34555555444 3445789999999999533 2 2333332 33333333344444455544433322 1 1
Q ss_pred HHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----C-------------------CcEEEecCCCCHHHHHH
Q 010762 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----G-------------------YEVTTIMGATIQEERDK 391 (502)
Q Consensus 335 k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~-------------------~~~~~l~~~~~~~~r~~ 391 (502)
-.....+.+.+....+..++|||.++..+.+.|+.|.+. | .....+|++|...+|..
T Consensus 334 ~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 334 IDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHH
Confidence 122333445566678999999999999999999988763 1 23578999999999999
Q ss_pred HHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCC---CCCCCccchhhhhcccccC--CCcceEEEEee
Q 010762 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK---HLEPDCEVYLHRIGRAGRF--GRKGVVFNLLM 463 (502)
Q Consensus 392 ~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~---~~~~s~~~y~qr~GR~~R~--g~~g~~~~~~~ 463 (502)
+.+.|..|.++||+||..++.|+|+|+-- ||..+.+.-... ....++.+.+|..|||||- +..|.++++-+
T Consensus 414 ~E~~F~~G~i~vL~cTaTLAwGVNLPA~a-ViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt 489 (1230)
T KOG0952|consen 414 VEKEFKEGHIKVLCCTATLAWGVNLPAYA-VIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITT 489 (1230)
T ss_pred HHHHHhcCCceEEEecceeeeccCCcceE-EEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEec
Confidence 99999999999999999999999998654 444444321111 1223567789999999995 46788885554
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=260.73 Aligned_cols=341 Identities=20% Similarity=0.216 Sum_probs=258.0
Q ss_pred ccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 102 f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
-++++.+.+..+-|...|....++|.|..+|...+.| .++++..|||.||++||.+|++. ..+.+||+||..
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~--ed~~lil~tgggkslcyqlpal~------adg~alvi~pli 144 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAG--EDAFLILPTGGGKSLCYQLPALC------ADGFALVICPLI 144 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhcc--CceEEEEeCCCccchhhhhhHHh------cCCceEeechhH
Confidence 3567888888888888889999999999999999999 99999999999999999999995 355899999999
Q ss_pred HHHHHHHHHHHHhhcccCceeeEeecCCCCCc----ccccCCCCCCCeEEEeCchHHHHH---HHc--CccCCCceEEEE
Q 010762 182 ELAIQNLEVLRKMGKHTGITSECAVPTDSTNY----VPISKRPPVTAQVVIGTPGTIKKW---MSA--KKLGFSRLKILV 252 (502)
Q Consensus 182 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Ilv~Tp~~l~~~---l~~--~~~~~~~~~~lV 252 (502)
.|+....-+++.++.. ...+....+... ............+++.||+.+... +.. ..+....+.++-
T Consensus 145 slmedqil~lkqlgi~----as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ia 220 (695)
T KOG0353|consen 145 SLMEDQILQLKQLGID----ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIA 220 (695)
T ss_pred HHHHHHHHHHHHhCcc----hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEe
Confidence 9999888888877533 222222222111 011111223457999999987432 221 234566789999
Q ss_pred EeCchhhhcc-cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCC
Q 010762 253 YDEADHMLDE-AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331 (502)
Q Consensus 253 lDEah~l~~~-~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (502)
+||+|+...+ +.|+..+. .+..+.+..++..+++++||.+..+...+...+.-...+.... .....++...+..-+.
T Consensus 221 idevhccsqwghdfr~dy~-~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYK-ALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFNRPNLKYEVRQKPG 298 (695)
T ss_pred ecceeehhhhCcccCcchH-HHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccCCCCceeEeeeCCC
Confidence 9999998874 45666544 5666777777889999999999888777776654333222222 2222333333333333
Q ss_pred hHH-HHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 332 ELA-KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 332 ~~~-k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
... -...+..++ ...-.+...||||-|++.|+.++..|+.+|+.+..+|..|.+.+|.-+-..|..|+++|+|+|-.+
T Consensus 299 n~dd~~edi~k~i-~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 299 NEDDCIEDIAKLI-KGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred ChHHHHHHHHHHh-ccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 322 222333322 222356778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEecCCCCCCCCCCCCccchhh-------------------------------------------hhc
Q 010762 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLH-------------------------------------------RIG 447 (502)
Q Consensus 411 ~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~q-------------------------------------------r~G 447 (502)
++|||-|+|++|||.++| .|++.|.| -.|
T Consensus 378 gmgidkpdvrfvihhsl~--------ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesg 449 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLP--------KSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESG 449 (695)
T ss_pred cccCCCCCeeEEEecccc--------hhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcc
Confidence 999999999999999999 89999999 679
Q ss_pred ccccCCCcceEEEEeeCC
Q 010762 448 RAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 448 R~~R~g~~g~~~~~~~~~ 465 (502)
|+||.+.+..||++|--.
T Consensus 450 ragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 450 RAGRDDMKADCILYYGFA 467 (695)
T ss_pred ccccCCCcccEEEEechH
Confidence 999999999999888643
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-33 Score=285.15 Aligned_cols=309 Identities=16% Similarity=0.121 Sum_probs=207.4
Q ss_pred CCcHHHHhhhhhhcCC-CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCce
Q 010762 123 KPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (502)
.++|+|.+++..++.. ..+..++++|||+|||++.+..+. .+ +.++|||||+..|+.||.+.|.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 4899999999998743 225789999999999999765443 33 2469999999999999999999986543344
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc--------CccCCCceEEEEEeCchhhhcccCCHHHHHHHH
Q 010762 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA--------KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIM 273 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~ 273 (502)
+....++.... .....+|+|+|+..+...... ..+.-..+++||+||||++.. ..+..++
T Consensus 329 I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-----~~fr~il 396 (732)
T TIGR00603 329 ICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-----AMFRRVL 396 (732)
T ss_pred EEEEecCcccc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH-----HHHHHHH
Confidence 43333322111 112368999999887532211 112234678999999998854 2234455
Q ss_pred HHhhhcCCCeeEEEEeecCChhHH--HHHHHHhcCCceeeecccc----cccccceEEEEecC-----------------
Q 010762 274 KDIERSSGHCQVLLFSATFNETVK--NFVTRIVKDYNQLFVKKEE----LSLESVKQYKVYCP----------------- 330 (502)
Q Consensus 274 ~~l~~~~~~~q~v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------------- 330 (502)
..+.. ...+++|||+...-. ..+..++. |......-.+ ..+......-+.++
T Consensus 397 ~~l~a----~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 397 TIVQA----HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HhcCc----CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 54432 347999999863211 11111221 2111111100 01111111111111
Q ss_pred -----ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC-CCeEE
Q 010762 331 -----DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG-LTQVL 404 (502)
Q Consensus 331 -----~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~iL 404 (502)
.+..|...+..++......+.++||||.+...+..++..| .+..+||++++.+|.++++.|+.| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1123344443333333346789999999999999998877 256799999999999999999865 78999
Q ss_pred EEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceE-------EEEeeCCc
Q 010762 405 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV-------FNLLMDGD 466 (502)
Q Consensus 405 v~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~-------~~~~~~~~ 466 (502)
|+|+++.+|||+|++++||+++.|+ .|...|+||+||++|.+..|.+ |+|++...
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~-------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHY-------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCC-------CCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999999999999884 5889999999999999766654 78887544
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.7e-32 Score=284.42 Aligned_cols=340 Identities=17% Similarity=0.190 Sum_probs=214.0
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCcee
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (502)
.|.|+|......++......++++.++|.|||+.+.+.+-..+ ......++|||||. .|+.||...+.+.+. +..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~-~~g~~~rvLIVvP~-sL~~QW~~El~~kF~---l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQL-LTGRAERVLILVPE-TLQHQWLVEMLRRFN---LRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHH-HcCCCCcEEEEcCH-HHHHHHHHHHHHHhC---CCe
Confidence 4999999998887765446899999999999998765544333 33445689999998 799999998865442 222
Q ss_pred eEeecCCCCC-cccccCCCCCCCeEEEeCchHHHHHHH-cCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC
Q 010762 203 ECAVPTDSTN-YVPISKRPPVTAQVVIGTPGTIKKWMS-AKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (502)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~~~~~Ilv~Tp~~l~~~l~-~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~ 280 (502)
. ++...... ............+++|++.+.+...-. ...+.-..+++||+||||++....+-.......+..+...
T Consensus 227 ~-i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~- 304 (956)
T PRK04914 227 S-LFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV- 304 (956)
T ss_pred E-EEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc-
Confidence 2 22211110 000011122246899999987764211 1122234688999999999973211111123344444321
Q ss_pred CCeeEEEEeecCCh-------------------hHHHHHH------------------------------HHhcCC----
Q 010762 281 GHCQVLLFSATFNE-------------------TVKNFVT------------------------------RIVKDY---- 307 (502)
Q Consensus 281 ~~~q~v~~SAT~~~-------------------~~~~~~~------------------------------~~~~~~---- 307 (502)
...++++|||+-. +...|.. .++...
T Consensus 305 -~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 305 -IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred -cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 2368999999521 0011100 000000
Q ss_pred -----------------------------ceeeeccc-----ccccccceEEEEecCCh---------------------
Q 010762 308 -----------------------------NQLFVKKE-----ELSLESVKQYKVYCPDE--------------------- 332 (502)
Q Consensus 308 -----------------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~--------------------- 332 (502)
..+..... ..+..........++..
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~ 463 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQ 463 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHH
Confidence 00000000 00000000110111100
Q ss_pred --------------HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHH-hCCCcEEEecCCCCHHHHHHHHHHHH
Q 010762 333 --------------LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK-DFGYEVTTIMGATIQEERDKIVKEFK 397 (502)
Q Consensus 333 --------------~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~l~~~~~~~~r~~~~~~f~ 397 (502)
..|...+...+... ...++||||+++..+..+++.|+ ..|+.+..+||+|++.+|.++++.|+
T Consensus 464 ~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 464 IYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 11222333322222 36799999999999999999994 67999999999999999999999999
Q ss_pred cC--CCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHH
Q 010762 398 DG--LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIE 475 (502)
Q Consensus 398 ~~--~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~ 475 (502)
++ ...|||||+++++|+|++.+++|||||+| .++..|.||+||++|.|+.|.+.+++....+ .....+.
T Consensus 542 ~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP--------~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~-t~~e~i~ 612 (956)
T PRK04914 542 DEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP--------FNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG-TAQERLF 612 (956)
T ss_pred cCCCCccEEEechhhccCCCcccccEEEEecCC--------CCHHHHHHHhcccccCCCCceEEEEEccCCC-CHHHHHH
Confidence 74 58999999999999999999999999999 5788899999999999999887666654433 2445556
Q ss_pred HHhCCc
Q 010762 476 RYFDIK 481 (502)
Q Consensus 476 ~~l~~~ 481 (502)
+.+...
T Consensus 613 ~~~~~~ 618 (956)
T PRK04914 613 RWYHEG 618 (956)
T ss_pred HHHhhh
Confidence 655543
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.1e-31 Score=274.96 Aligned_cols=328 Identities=21% Similarity=0.219 Sum_probs=216.4
Q ss_pred CCcHHHHhhhhhhcCC-CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCce
Q 010762 123 KPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (502)
.+|+.|.++++.++.+ ..+++++.|+||||||.+|+.++...+. .+.++||++|+++|+.|+++.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---~g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA---QGKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 2378999999999999999988877664 35689999999999999999998754 345
Q ss_pred eeEeecCCCCCc--ccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhccc--CCHHHHHHHHHHhh
Q 010762 202 SECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA--GFRDDSLRIMKDIE 277 (502)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~--~~~~~~~~i~~~l~ 277 (502)
+...+++.+... ..+.....+.++|+|+|++.+. ..+.++++||+||+|...... +..-....+. .+.
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHH
Confidence 555555543321 1122233445799999998764 347889999999999755311 1111112221 112
Q ss_pred hcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHH------HHHHHHHHHHHhcccCC
Q 010762 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA------KVMVIRDRIFELGEKMG 351 (502)
Q Consensus 278 ~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------k~~~l~~~l~~~~~~~~ 351 (502)
....+.+++++|||++......+. .+.+..+................+....... -...+...+.+....+.
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~ 367 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGE 367 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCC
Confidence 223367999999997754433222 1222222222211100000111111111000 11234444566666778
Q ss_pred cEEEEcCChh------------------------------------------------------------hHHHHHHHHH
Q 010762 352 QTIIFVRTKN------------------------------------------------------------SASALHKALK 371 (502)
Q Consensus 352 ~~lVF~~s~~------------------------------------------------------------~~~~l~~~L~ 371 (502)
++|||+|++. .++.+++.|.
T Consensus 368 qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~ 447 (679)
T PRK05580 368 QVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELA 447 (679)
T ss_pred eEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHH
Confidence 8999987521 3556777777
Q ss_pred hC--CCcEEEecCCCCH--HHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecC--CCCCCCCC--CCCccchh
Q 010762 372 DF--GYEVTTIMGATIQ--EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDP--PVKHGKHL--EPDCEVYL 443 (502)
Q Consensus 372 ~~--~~~~~~l~~~~~~--~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~--p~~~~~~~--~~s~~~y~ 443 (502)
.. +.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|++++|+.+|. +....+.+ ......|.
T Consensus 448 ~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~ 527 (679)
T PRK05580 448 ELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLT 527 (679)
T ss_pred HhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHH
Confidence 75 7789999999874 67999999999999999999999999999999999965544 42221110 11235689
Q ss_pred hhhcccccCCCcceEEEEeeCCc
Q 010762 444 HRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 444 qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
|++||+||.+..|.+++.....+
T Consensus 528 q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 528 QVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHhhccCCCCCCEEEEEeCCCC
Confidence 99999999999999997665443
No 83
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.4e-32 Score=262.65 Aligned_cols=327 Identities=15% Similarity=0.218 Sum_probs=240.2
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
+.|. +-|+|+.+|-++-++ .+++|.|.|.+|||+++-.+|...+.. ..++++..|-++|-+|-++.+..-++..
T Consensus 126 YPF~-LDpFQ~~aI~Cidr~--eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DV 199 (1041)
T KOG0948|consen 126 YPFT-LDPFQSTAIKCIDRG--ESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDV 199 (1041)
T ss_pred CCcc-cCchHhhhhhhhcCC--ceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhccc
Confidence 4454 889999999999998 999999999999999988888887753 4489999999999999999988777666
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
|+- .|.... ...+.-+|+|.+.|..++.++.--+..+.+||+||+|.|-+. ...-.+.+-+-.+
T Consensus 200 GLM----TGDVTI---------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDk-ERGVVWEETIIll-- 263 (1041)
T KOG0948|consen 200 GLM----TGDVTI---------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDK-ERGVVWEETIILL-- 263 (1041)
T ss_pred cee----ecceee---------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhcccc-ccceeeeeeEEec--
Confidence 642 222211 123568999999999999988777899999999999999872 1111122222223
Q ss_pred cCCCeeEEEEeecCChhHH--HHHHHHhcCCceeeecccccccccceEEEEecC---------Ch-------HHH-----
Q 010762 279 SSGHCQVLLFSATFNETVK--NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP---------DE-------LAK----- 335 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-------~~k----- 335 (502)
+.+.+.+++|||+|...+ +++..+-..|-.+. ..+..+..++|+.+... .. ..+
T Consensus 264 -P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVV--YTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l 340 (1041)
T KOG0948|consen 264 -PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVV--YTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVL 340 (1041)
T ss_pred -cccceEEEEeccCCCHHHHHHHHHHHhcCCceEE--eecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHh
Confidence 347899999999996543 34444444443333 23344444455433221 10 001
Q ss_pred ------------------------------HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCC----------
Q 010762 336 ------------------------------VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY---------- 375 (502)
Q Consensus 336 ------------------------------~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~---------- 375 (502)
+..+...+. .....++|||+-|+++|+.+|-.|..+.+
T Consensus 341 ~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~--~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~ 418 (1041)
T KOG0948|consen 341 RKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIM--ERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVE 418 (1041)
T ss_pred hccCCCccccccccccccCCcCCCCCCcccHHHHHHHHH--hhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHH
Confidence 111111111 12346899999999999999988776432
Q ss_pred -----------------------------cEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEec
Q 010762 376 -----------------------------EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYD 426 (502)
Q Consensus 376 -----------------------------~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~ 426 (502)
.+.++|||+-+--++.+.-.|.+|-+++|+||..++.|||+|.-++|+.--
T Consensus 419 ~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~ 498 (1041)
T KOG0948|consen 419 TIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAV 498 (1041)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeec
Confidence 267899999999999999999999999999999999999999888888766
Q ss_pred CCCCCCCCCCCCccchhhhhcccccCCC--cceEEEEeeCCccHHHHH
Q 010762 427 PPVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGDDMIIME 472 (502)
Q Consensus 427 ~p~~~~~~~~~s~~~y~qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~ 472 (502)
.-|++...++-|.-+|+|+.||+||.|. .|.||+++...-+....+
T Consensus 499 rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak 546 (1041)
T KOG0948|consen 499 RKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAK 546 (1041)
T ss_pred cccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHH
Confidence 6677777777888999999999999985 689998887655444433
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=8.4e-31 Score=270.59 Aligned_cols=362 Identities=19% Similarity=0.213 Sum_probs=279.6
Q ss_pred CCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcC----CCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc
Q 010762 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (502)
Q Consensus 105 ~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~----~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt 180 (502)
++.+.+....+...|+|. -||=|..||..+.+ +...|=++||.-|-|||-+++-+++..+. .+.++.|+|||
T Consensus 577 f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---~GKQVAvLVPT 652 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---DGKQVAVLVPT 652 (1139)
T ss_pred CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---CCCeEEEEccc
Confidence 445666777777778887 78999999998865 34579999999999999999999988774 56799999999
Q ss_pred HHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
.-||+|.++.|+..+...++++..+....+.... .......+..||+|+|.. ++. ..+.+.+++++|+||=|+
T Consensus 653 TlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~-kdv~FkdLGLlIIDEEqR 727 (1139)
T COG1197 653 TLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS-KDVKFKDLGLLIIDEEQR 727 (1139)
T ss_pred HHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC-CCcEEecCCeEEEechhh
Confidence 9999999999999999999998887765554432 233445567899999953 333 456799999999999998
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
..-. -++-++.++. +.-++-+|||+-+....+...-+.+...+..++.. ...+..++....+. .
T Consensus 728 FGVk------~KEkLK~Lr~---~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--R~pV~T~V~~~d~~-----~ 791 (1139)
T COG1197 728 FGVK------HKEKLKELRA---NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED--RLPVKTFVSEYDDL-----L 791 (1139)
T ss_pred cCcc------HHHHHHHHhc---cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC--CcceEEEEecCChH-----H
Confidence 6542 2444555555 77899999998888777766666665555433322 22334444333332 3
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi 416 (502)
+.+.+.+....+|.+-...|.++....++..|+++ ...+.+.||.|+..+-+.++..|.+|+.+|||||.+++.|||+
T Consensus 792 ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDI 871 (1139)
T COG1197 792 IREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDI 871 (1139)
T ss_pred HHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCC
Confidence 33445555668999999999999999999999987 5678999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHHHHHHH
Q 010762 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAAL 496 (502)
Q Consensus 417 ~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 496 (502)
|+++++|..+.-. ...++..|-.||+||.++.+.||.++-+.. ..-..-++.| ..|+.+.+...+|+.+|
T Consensus 872 PnANTiIIe~AD~-------fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k--~lT~~A~kRL-~aI~~~~~LGaGf~lA~ 941 (1139)
T COG1197 872 PNANTIIIERADK-------FGLAQLYQLRGRVGRSNKQAYAYFLYPPQK--ALTEDAEKRL-EAIASFTELGAGFKLAM 941 (1139)
T ss_pred CCCceEEEecccc-------ccHHHHHHhccccCCccceEEEEEeecCcc--ccCHHHHHHH-HHHHhhhhcCchHHHHh
Confidence 9999999887765 457789999999999999999998875432 2222223332 24556667788999999
Q ss_pred HHcCC
Q 010762 497 KAAGL 501 (502)
Q Consensus 497 ~~~~~ 501 (502)
+++.|
T Consensus 942 ~DLeI 946 (1139)
T COG1197 942 HDLEI 946 (1139)
T ss_pred cchhc
Confidence 98875
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.98 E-value=1.2e-30 Score=272.25 Aligned_cols=318 Identities=17% Similarity=0.212 Sum_probs=204.1
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
++...|+|+|..+......+ ..+++.||||+|||.+++.++...+ ......+++|..||+++++|+++.+..+....
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~p--gl~ileApTGsGKTEAAL~~A~~l~-~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQP--GLTIIEAPTGSGKTEAALAYAWRLI-DQGLADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred cCCCCChHHHHHHHhhccCC--CeEEEEeCCCCCHHHHHHHHHHHHH-HhCCCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 34457999999886543333 7899999999999999877665433 33345689999999999999999987644321
Q ss_pred --CceeeEeecCCCCCc--cc---------------------c--cCCCCCCCeEEEeCchHHHHHHHcC-ccCCCc---
Q 010762 199 --GITSECAVPTDSTNY--VP---------------------I--SKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSR--- 247 (502)
Q Consensus 199 --~~~~~~~~~~~~~~~--~~---------------------~--~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~--- 247 (502)
...+...++....+. .. . ......-.+|+|||..+++..+-.. ...+..
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 123333333221110 00 0 0011112689999999887443321 111222
Q ss_pred -eEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCc---------eeeecc---
Q 010762 248 -LKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYN---------QLFVKK--- 314 (502)
Q Consensus 248 -~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~---------~~~~~~--- 314 (502)
-++|||||+|.+-. .+...+..+++.+... ...+|+||||+|......+...+.... .+....
T Consensus 439 a~svvIiDEVHAyD~--ym~~lL~~~L~~l~~~--g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~ 514 (878)
T PRK09694 439 GRSVLIVDEVHAYDA--YMYGLLEAVLKAQAQA--GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNG 514 (878)
T ss_pred ccCeEEEechhhCCH--HHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccc
Confidence 25899999997632 2233445555555432 456999999999887765544322110 000000
Q ss_pred -ccccccc-----ceEEEEec---C-ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCC---CcEEEec
Q 010762 315 -EELSLES-----VKQYKVYC---P-DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG---YEVTTIM 381 (502)
Q Consensus 315 -~~~~~~~-----~~~~~~~~---~-~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~l~ 381 (502)
....... .....+.+ . ........+...+......++++||||||++.|..+++.|++.+ .++..+|
T Consensus 515 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 515 AQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred ceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 0000000 00001111 0 00011122333344444577899999999999999999999764 6899999
Q ss_pred CCCCHHHH----HHHHHHH-HcCC---CeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC
Q 010762 382 GATIQEER----DKIVKEF-KDGL---TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 453 (502)
Q Consensus 382 ~~~~~~~r----~~~~~~f-~~~~---~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g 453 (502)
|.+++.+| .++++.| ++|+ ..|||||+++++|||+ +++++|....| ++.|+||+||++|.+
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP----------idsLiQRaGR~~R~~ 663 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP----------VDLLFQRLGRLHRHH 663 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC----------HHHHHHHHhccCCCC
Confidence 99999999 4678888 6665 4799999999999999 68999998888 678999999999987
Q ss_pred C
Q 010762 454 R 454 (502)
Q Consensus 454 ~ 454 (502)
.
T Consensus 664 ~ 664 (878)
T PRK09694 664 R 664 (878)
T ss_pred C
Confidence 5
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.4e-30 Score=252.42 Aligned_cols=332 Identities=22% Similarity=0.234 Sum_probs=249.3
Q ss_pred CCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCC----CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 104 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 104 ~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~----~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
.+.....+++.+.+.+.|. +|..|++++..|... ...+=+++|.-|||||++++++++..+. .|.++...+|
T Consensus 244 ~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAP 319 (677)
T COG1200 244 PLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAP 319 (677)
T ss_pred CCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEecc
Confidence 4556677788887778998 999999999999764 1357789999999999999999998874 6778999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceeeEeecCCCCCc--ccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
|.-||.|.+..+.++....++.+..+.|...... ........+..+|+|+|..-+. +.+.+.++.++|+||=|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEeccc
Confidence 9999999999999999999999888877654432 2233445566899999965443 45679999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCC-CeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSG-HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV 336 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~-~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 336 (502)
+..-. -...+ ..... .+.+++||||+-+... +...+.+.....+.....-...+....+... ..
T Consensus 395 RFGV~------QR~~L---~~KG~~~Ph~LvMTATPIPRTL--Alt~fgDldvS~IdElP~GRkpI~T~~i~~~----~~ 459 (677)
T COG1200 395 RFGVH------QRLAL---REKGEQNPHVLVMTATPIPRTL--ALTAFGDLDVSIIDELPPGRKPITTVVIPHE----RR 459 (677)
T ss_pred cccHH------HHHHH---HHhCCCCCcEEEEeCCCchHHH--HHHHhccccchhhccCCCCCCceEEEEeccc----cH
Confidence 86541 11122 22222 4689999999766543 3344444443333332222233333333332 22
Q ss_pred HHHHHHHHHhcccCCcEEEEcCChhhH--------HHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Q 010762 337 MVIRDRIFELGEKMGQTIIFVRTKNSA--------SALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 406 (502)
Q Consensus 337 ~~l~~~l~~~~~~~~~~lVF~~s~~~~--------~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~ 406 (502)
..+.+.+......+.++.|.|+-+++. ..++..|+.. ++++..+||.|+..++++++++|++|+.+||||
T Consensus 460 ~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVa 539 (677)
T COG1200 460 PEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVA 539 (677)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEE
Confidence 233334555566889999999977654 4556666643 567999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 407 TDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 407 T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
|.+++.|+|+|+++++|.++.-.. ..++.-|-.||+||.+.+..|++++.+..
T Consensus 540 TTVIEVGVdVPnATvMVIe~AERF-------GLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 540 TTVIEVGVDVPNATVMVIENAERF-------GLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred eeEEEecccCCCCeEEEEechhhh-------hHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999987753 46678899999999999999999888765
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.3e-30 Score=260.32 Aligned_cols=327 Identities=17% Similarity=0.172 Sum_probs=225.5
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
+|.. |+++|...--.+..| -|+.++||+|||++|++|++..+. .+..++|++||++||.|.++++..+...+
T Consensus 79 lg~~-~ydvQliGg~~Lh~G----~Iaem~TGeGKTL~a~Lpa~~~al---~G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 79 LGLR-HFDVQLIGGMVLHEG----NIAEMRTGEGKTLVATLPAYLNAI---SGRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred cCCC-cchHHHhhhhhhccC----ccccccCCCCchHHHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 5655 889998776666665 589999999999999999997664 34469999999999999999999999999
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcC-ccCC-----CceEEEEEeCchhhhcccC-------
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK-KLGF-----SRLKILVYDEADHMLDEAG------- 264 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-~~~~-----~~~~~lVlDEah~l~~~~~------- 264 (502)
++++.+++++....... ....+||+|+||++| .+++..+ .+++ ..+.++|+||||.|+-+..
T Consensus 151 GLtv~~i~gg~~~~~r~----~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQ----EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred CceEEEEeCCCCHHHHH----HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 99999988775443221 122589999999999 9998876 3334 5899999999998763100
Q ss_pred --------CHHHHHHHHHHhhhc-----------CCCeeEEEEeecCChhHHHH------------------------H-
Q 010762 265 --------FRDDSLRIMKDIERS-----------SGHCQVLLFSATFNETVKNF------------------------V- 300 (502)
Q Consensus 265 --------~~~~~~~i~~~l~~~-----------~~~~q~v~~SAT~~~~~~~~------------------------~- 300 (502)
.-..+..+...+... ....+.+.+|-.=...++.+ +
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence 111222333333321 00112233332200000000 0
Q ss_pred ---H--HHhcCCceeee--------cc-----------------------------------------------------
Q 010762 301 ---T--RIVKDYNQLFV--------KK----------------------------------------------------- 314 (502)
Q Consensus 301 ---~--~~~~~~~~~~~--------~~----------------------------------------------------- 314 (502)
+ .++.....+.+ +.
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence 0 00110000000 00
Q ss_pred ----------------------cccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh
Q 010762 315 ----------------------EELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD 372 (502)
Q Consensus 315 ----------------------~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 372 (502)
...+................|...+...+......+.|+||||+|++.++.++.+|..
T Consensus 387 GTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 387 GTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred CCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 0000000000111122356678888887877777899999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCC---------------------------------
Q 010762 373 FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV--------------------------------- 419 (502)
Q Consensus 373 ~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v--------------------------------- 419 (502)
.|+++..||+.+.+.++..+.+.|+.|. |+|||++++||+||.--
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999994 99999999999998621
Q ss_pred -----CEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 420 -----NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 420 -----~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
=|||--..+ .|..--.|-.||+||-|.+|.+..|++-+|+
T Consensus 545 ~~~GGL~VIgTerh--------esrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 545 IAAGGLRIIGSERH--------ESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHcCCCEEEeeccC--------chHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 134433333 6777778999999999999999988886655
No 88
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=9.1e-30 Score=253.23 Aligned_cols=323 Identities=17% Similarity=0.206 Sum_probs=228.5
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
.++|. |-++|++||-++.+| .+++|.|+|.+|||+++-.++.-.- .+..++++..|-++|-+|-++.|+.-.+.
T Consensus 293 ~~pFe-lD~FQk~Ai~~lerg--~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 293 IYPFE-LDTFQKEAIYHLERG--DSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred hCCCC-ccHHHHHHHHHHHcC--CeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhccc
Confidence 46776 899999999999999 9999999999999999766554322 35668999999999999999999987766
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhh
Q 010762 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277 (502)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~ 277 (502)
.|+ +.|+.. ....+.++|+|.+.|..++.++.--++++.+|||||+|.+.+. ...-.+.+++-.++
T Consensus 367 vgL----lTGDvq---------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~-eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 367 VGL----LTGDVQ---------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV-ERGVVWEEVIIMLP 432 (1248)
T ss_pred cce----eeccee---------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc-cccccceeeeeecc
Confidence 552 333321 2234689999999999999987766899999999999998872 33445566666676
Q ss_pred hcCCCeeEEEEeecCChhHH--HHHHHHhcCCceeeecccccccccceEEEEecC-------------------------
Q 010762 278 RSSGHCQVLLFSATFNETVK--NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP------------------------- 330 (502)
Q Consensus 278 ~~~~~~q~v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 330 (502)
+ ..++|++|||.|...+ +++.+.-+. .+++......+..+.++...-.
T Consensus 433 ~---HV~~IlLSATVPN~~EFA~WIGRtK~K--~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 433 R---HVNFILLSATVPNTLEFADWIGRTKQK--TIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred c---cceEEEEeccCCChHHHHHHhhhccCc--eEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 6 7899999999986553 233332222 1222111111111111111000
Q ss_pred ---------------------------------------ChHHHHHHHHHHHHHh-cccCCcEEEEcCChhhHHHHHHHH
Q 010762 331 ---------------------------------------DELAKVMVIRDRIFEL-GEKMGQTIIFVRTKNSASALHKAL 370 (502)
Q Consensus 331 ---------------------------------------~~~~k~~~l~~~l~~~-~~~~~~~lVF~~s~~~~~~l~~~L 370 (502)
....+...+.+++... ....-|++|||-|++.|+..+..|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 0000100122211111 123458999999999999999998
Q ss_pred HhCCC---------------------------------------cEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccc
Q 010762 371 KDFGY---------------------------------------EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (502)
Q Consensus 371 ~~~~~---------------------------------------~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 411 (502)
...++ .++++||++-+-.++-+...|..|-++||+||..++
T Consensus 588 ~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFA 667 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFA 667 (1248)
T ss_pred hccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhh
Confidence 76322 268899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCC--cceEEEEeeCC
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDG 465 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~--~g~~~~~~~~~ 465 (502)
+|+|+|.-.+||.-=.-..+...+.-.+-+|.|++|||||.|- .|.+++++.+.
T Consensus 668 MGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 668 MGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999997666664322233333444578899999999999984 68888777644
No 89
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=263.35 Aligned_cols=357 Identities=21% Similarity=0.257 Sum_probs=252.3
Q ss_pred CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC--------CCCeEEEec
Q 010762 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--------KAPQALCIC 178 (502)
Q Consensus 107 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~--------~~~~~lil~ 178 (502)
+|.+-..++ +|...+.++|....+..+.+. .++++|||||+|||..+++.+++.+.... ...++++++
T Consensus 296 lP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~-EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 296 LPKWNQPAF---FGKQSLNRIQSKVYDAALRGD-ENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred Ccchhhhhc---ccchhhhHHHHHHHHHHhcCc-CcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 444444444 578889999999999999985 89999999999999999999998884332 244799999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc---CCCceEEEEEeC
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL---GFSRLKILVYDE 255 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~---~~~~~~~lVlDE 255 (502)
|.++|++.|...|.+....+|+++.-..|........ ...++|+||||+.. +.+.++.- ..+-++++|+||
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q-----ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDE 445 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ-----IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDE 445 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh-----hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhh
Confidence 9999999999999999999999988887776543322 23578999999985 44444322 234578899999
Q ss_pred chhhhcccCCHHHHHHHHHHh----hhcCCCeeEEEEeecCChh--HHHHHHHHhcCCceeeecccccccccceEEEEec
Q 010762 256 ADHMLDEAGFRDDSLRIMKDI----ERSSGHCQVLLFSATFNET--VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 329 (502)
Q Consensus 256 ah~l~~~~~~~~~~~~i~~~l----~~~~~~~q~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (502)
+|.+-++.|.. +..|..+. ......++.+++|||+|+- +..|+.. ++..++.......+..+.|.++-+
T Consensus 446 IHLLhDdRGpv--LESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v---~~~glf~fd~syRpvPL~qq~Igi 520 (1674)
T KOG0951|consen 446 IHLLHDDRGPV--LESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRV---DPEGLFYFDSSYRPVPLKQQYIGI 520 (1674)
T ss_pred hhhcccccchH--HHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhcc---CcccccccCcccCcCCccceEecc
Confidence 99887765543 33333332 2233467899999999953 3333332 223344444455555666666554
Q ss_pred CCh--HHHH----HHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh-------------------------------
Q 010762 330 PDE--LAKV----MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD------------------------------- 372 (502)
Q Consensus 330 ~~~--~~k~----~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~------------------------------- 372 (502)
... ..+. ....+.+.+... .+++|||+.|++++...|+.++.
T Consensus 521 ~ek~~~~~~qamNe~~yeKVm~~ag-k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn 599 (1674)
T KOG0951|consen 521 TEKKPLKRFQAMNEACYEKVLEHAG-KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKN 599 (1674)
T ss_pred ccCCchHHHHHHHHHHHHHHHHhCC-CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccC
Confidence 322 2221 233344555543 38999999999999888877763
Q ss_pred ------CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE----ecCCCCCCCCCCCCccch
Q 010762 373 ------FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVY 442 (502)
Q Consensus 373 ------~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~----~~~p~~~~~~~~~s~~~y 442 (502)
+.+.++.+|+||+..+|..+.+.|++|.+++||+|-.+++|+|+|+-+++|- ||+-.+. +.+.++.+.
T Consensus 600 ~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~--w~elsp~dv 677 (1674)
T KOG0951|consen 600 PDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGR--WTELSPLDV 677 (1674)
T ss_pred hhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCc--cccCCHHHH
Confidence 2456889999999999999999999999999999999999999998777774 5544322 334688999
Q ss_pred hhhhcccccCCC--cceEEEEeeCCccHHHHHHHHHHhCCc
Q 010762 443 LHRIGRAGRFGR--KGVVFNLLMDGDDMIIMEKIERYFDIK 481 (502)
Q Consensus 443 ~qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~~i~~~l~~~ 481 (502)
.||.||+||.+- .|..+++-...+-..+.....+.|.++
T Consensus 678 ~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpie 718 (1674)
T KOG0951|consen 678 MQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIE 718 (1674)
T ss_pred HHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCCh
Confidence 999999999753 455554333222234444444444333
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=8.1e-30 Score=252.30 Aligned_cols=293 Identities=21% Similarity=0.263 Sum_probs=199.3
Q ss_pred CCcHHHHhhhhhhcC----CCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 123 KPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~----~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.|+++|.+++..+.. + +..++++|||+|||+.++..+-.. ...+|||||+++|+.||.+.+.......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~--~~gvivlpTGaGKT~va~~~~~~~------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTE--RRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccC--CceEEEeCCCCCHHHHHHHHHHHh------cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 499999999999987 6 899999999999999976655433 2239999999999999997777665432
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
. .+ -.+++..... .. ..|.|+|.+.+........+....+++||+||||++... . ...+...+..
T Consensus 108 ~-~~-g~~~~~~~~~-------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~----~~~~~~~~~~ 172 (442)
T COG1061 108 D-EI-GIYGGGEKEL-------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-S----YRRILELLSA 172 (442)
T ss_pred c-cc-ceecCceecc-------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-H----HHHHHHhhhc
Confidence 0 11 1122221111 00 369999999987752112222347899999999988763 2 2334444433
Q ss_pred cCCCeeEEEEeecCChhHHHHHHHHhcC--Cceeeecccc----cccccceEEEEec--C--------------------
Q 010762 279 SSGHCQVLLFSATFNETVKNFVTRIVKD--YNQLFVKKEE----LSLESVKQYKVYC--P-------------------- 330 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~--~-------------------- 330 (502)
.. .++++|||++.........+... +........+ ..+.......+.. .
T Consensus 173 ~~---~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 173 AY---PRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred cc---ceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 21 18999999763321112221111 1111111110 0011111111111 0
Q ss_pred ---------------ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 010762 331 ---------------DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395 (502)
Q Consensus 331 ---------------~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~ 395 (502)
....+...+...+.... .+.+++|||.+..++..++..|...+. +..+.+..++.+|..+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 01122222333233222 567999999999999999999998888 9999999999999999999
Q ss_pred HHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhccccc
Q 010762 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451 (502)
Q Consensus 396 f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R 451 (502)
|+.|.+.+||++.++.+|+|+|+++++|..... .|...|+||+||.-|
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t--------~S~~~~~Q~lGR~LR 375 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT--------GSRRLFIQRLGRGLR 375 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCC--------CcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999887 889999999999999
No 91
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=2.7e-30 Score=232.05 Aligned_cols=200 Identities=41% Similarity=0.688 Sum_probs=171.8
Q ss_pred ccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC--CCCCeEEEecC
Q 010762 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--LKAPQALCICP 179 (502)
Q Consensus 102 f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~--~~~~~~lil~P 179 (502)
|+++++++.+.+.+.+ +|+..|+++|.++++.++.| +++++++|||+|||++|++|++..+... ..+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~--~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSG--RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcC
Confidence 7889999999999987 99999999999999999998 9999999999999999999999998766 56789999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhh
Q 010762 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (502)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l 259 (502)
+++|+.|+...+..+....++.+.+..++...... ......+++|+|+||++|.+++......+.+++++|+||+|.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQ--IRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 99999999999999987777777777665543221 1122246899999999999999888788899999999999999
Q ss_pred hcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCcee
Q 010762 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQL 310 (502)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 310 (502)
.+ .++...+..++..+.. .+|++++|||+++.+..++..++.++..+
T Consensus 156 ~~-~~~~~~~~~~~~~l~~---~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LD-MGFEDQIREILKLLPK---DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hc-cChHHHHHHHHHhCCc---ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 86 5788888888877755 78999999999999999888888776543
No 92
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.4e-29 Score=242.85 Aligned_cols=333 Identities=19% Similarity=0.233 Sum_probs=239.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH-HhhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR-KMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+.+++.|+||||||.. +|-+-.-..-...+++.+.-|+|..|..++.... +.+..+|-.+.+.+... ..
T Consensus 67 qvlIviGeTGsGKSTQ--ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFe--------d~ 136 (674)
T KOG0922|consen 67 QVLIVIGETGSGKSTQ--IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFE--------DS 136 (674)
T ss_pred CEEEEEcCCCCCcccc--HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEec--------cc
Confidence 8999999999999996 3322111111233348888899999999987654 45555555555544332 33
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNF 299 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~ 299 (502)
....+.|.++|.|.|++.+..+.. ++.+++||+||||.-.- ..+.+..+++.+.+.++..++|++|||+... .
T Consensus 137 ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl---~TDiLlGlLKki~~~R~~LklIimSATlda~---k 209 (674)
T KOG0922|consen 137 TSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSL---HTDILLGLLKKILKKRPDLKLIIMSATLDAE---K 209 (674)
T ss_pred CCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhh---HHHHHHHHHHHHHhcCCCceEEEEeeeecHH---H
Confidence 334578999999999999887775 89999999999997553 3566778888888888889999999998743 3
Q ss_pred HHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHH-HHhcccCCcEEEEcCChhhHHHHHHHHHhC----C
Q 010762 300 VTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRI-FELGEKMGQTIIFVRTKNSASALHKALKDF----G 374 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~ 374 (502)
+..++.....+.+.....+ +..++...+....-...+...+ .+..++.+.+|||.+.+++++.+++.|.+. +
T Consensus 210 fS~yF~~a~i~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~ 286 (674)
T KOG0922|consen 210 FSEYFNNAPILTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLP 286 (674)
T ss_pred HHHHhcCCceEeecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhcc
Confidence 6667776555555443333 3334443333222222222211 122367889999999999999999999765 1
Q ss_pred ----CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCC-------CCCCC---CCCCCcc
Q 010762 375 ----YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPP-------VKHGK---HLEPDCE 440 (502)
Q Consensus 375 ----~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p-------~~~~~---~~~~s~~ 440 (502)
.-+.++||.++.+++.+++..-..|..+|+++|+++++.+.|+++.+||+-++- ..+.. ..|-|-.
T Consensus 287 ~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISka 366 (674)
T KOG0922|consen 287 EDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKA 366 (674)
T ss_pred ccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHH
Confidence 135789999999999999998888999999999999999999999999974432 12222 1245778
Q ss_pred chhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc-CCHHHHHHHHHHcCC
Q 010762 441 VYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKAAGL 501 (502)
Q Consensus 441 ~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 501 (502)
...||.||+||.| +|+|+.+|+.. .+.++....+.++. -++......||.+|+
T Consensus 367 sA~QRaGRAGRt~-pGkcyRLYte~-------~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi 420 (674)
T KOG0922|consen 367 SANQRAGRAGRTG-PGKCYRLYTES-------AYDKMPLQTVPEIQRVNLSSAVLQLKALGI 420 (674)
T ss_pred HHhhhcccCCCCC-CceEEEeeeHH-------HHhhcccCCCCceeeechHHHHHHHHhcCC
Confidence 8899999999995 99999999843 22455555555554 588888999998886
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=3.5e-30 Score=257.77 Aligned_cols=308 Identities=19% Similarity=0.210 Sum_probs=195.6
Q ss_pred EEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCc--ccccCCCC
Q 010762 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPP 221 (502)
Q Consensus 144 lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 221 (502)
++.|+||||||.+|+..+...+. .+.++||++|+++|+.|+++.+++..+ ..+...+++.+... ..+.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f~---~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRFG---SQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhC---CcEEEEECCCCHHHHHHHHHHHHc
Confidence 46899999999998776655443 356899999999999999999987643 34444544433221 11222234
Q ss_pred CCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc--cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHH
Q 010762 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE--AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNF 299 (502)
Q Consensus 222 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~--~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~ 299 (502)
..++|+|+|+..+. ..+.++++|||||+|...-. .+..-....+.. +.....+.+++++|||++.+....
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~-~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV-YRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH-HHHHhcCCCEEEEeCCCCHHHHHH
Confidence 45789999998763 24778999999999976531 111111111111 111223678999999966443222
Q ss_pred HHHHhcCCceeeecccccccccceEEEEecCChH---HHHHHHHHHHHHhcccCCcEEEEcCChhh--------------
Q 010762 300 VTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL---AKVMVIRDRIFELGEKMGQTIIFVRTKNS-------------- 362 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~~~~~~~~~lVF~~s~~~-------------- 362 (502)
+ ..+.+..+................+...... .-...+.+.+.+....++++|||+|++..
T Consensus 147 ~--~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~ 224 (505)
T TIGR00595 147 A--KQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILC 224 (505)
T ss_pred H--hcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccC
Confidence 2 1122222222111111111111111121111 11223455566677778899999776543
Q ss_pred ----------------------------------------------HHHHHHHHHhC--CCcEEEecCCCCHHHH--HHH
Q 010762 363 ----------------------------------------------ASALHKALKDF--GYEVTTIMGATIQEER--DKI 392 (502)
Q Consensus 363 ----------------------------------------------~~~l~~~L~~~--~~~~~~l~~~~~~~~r--~~~ 392 (502)
.+++++.|.+. +.++..+|+++++..+ +.+
T Consensus 225 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~ 304 (505)
T TIGR00595 225 CPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEAL 304 (505)
T ss_pred CCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHH
Confidence 46777888776 6789999999987665 899
Q ss_pred HHHHHcCCCeEEEEcCccccCCCCCCCCEEE--EecCCCCCCCCC--CCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 393 VKEFKDGLTQVLISTDVLARGFDQQQVNLIV--NYDPPVKHGKHL--EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 393 ~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI--~~~~p~~~~~~~--~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
++.|++|+.+|||+|+++++|+|+|++++|+ ++|......+.+ ......|.|++||+||.++.|.+++.....++
T Consensus 305 l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 305 LNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 9999999999999999999999999999986 455432221110 11245689999999999999999865544443
No 94
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.1e-29 Score=243.59 Aligned_cols=346 Identities=16% Similarity=0.159 Sum_probs=231.3
Q ss_pred hhhcCCCCccEEEECcCCCcchhHhHHHHHhc-c--CCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCC
Q 010762 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSR-V--DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTD 209 (502)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~-l--~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~ 209 (502)
.+|..+ .-+||||.||||||...--.+... + .....++.+-|.-|+|..|..+++....-...++-.+.+.+...
T Consensus 266 EaIn~n--~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 266 EAINEN--PVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHhhcC--CeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 344444 789999999999999622222211 1 12223557888889999999988766543333555555555433
Q ss_pred CCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc----C-----
Q 010762 210 STNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS----S----- 280 (502)
Q Consensus 210 ~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~----~----- 280 (502)
+. ....+.|.++|.|.|++-+..+.+ +..++.||+||||.-.- +.+.+..++.++-+. .
T Consensus 344 ~t--------i~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSv---nTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 344 GT--------IGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSV---NTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred cc--------cCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccc---hHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 22 223468999999999999987665 89999999999997543 344444444443322 1
Q ss_pred -CCeeEEEEeecCChhHHHHHHHHhcC-CceeeecccccccccceEEEEecCC-hHHHHHHHHHHHHHhcccCCcEEEEc
Q 010762 281 -GHCQVLLFSATFNETVKNFVTRIVKD-YNQLFVKKEELSLESVKQYKVYCPD-ELAKVMVIRDRIFELGEKMGQTIIFV 357 (502)
Q Consensus 281 -~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~lVF~ 357 (502)
.+.++|+||||+.-.--.--+.++.. |..+.+.....++. .|+....+. .......-...|++.+ +.|.+|||+
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVs--IHF~krT~~DYi~eAfrKtc~IH~kL-P~G~ILVFv 488 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVS--IHFNKRTPDDYIAEAFRKTCKIHKKL-PPGGILVFV 488 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceE--EEeccCCCchHHHHHHHHHHHHhhcC-CCCcEEEEE
Confidence 25689999999862211111222322 22333333333322 222222221 1111111112233433 778999999
Q ss_pred CChhhHHHHHHHHHhC----------------------------------------------------------------
Q 010762 358 RTKNSASALHKALKDF---------------------------------------------------------------- 373 (502)
Q Consensus 358 ~s~~~~~~l~~~L~~~---------------------------------------------------------------- 373 (502)
..+.++..|++.|+..
T Consensus 489 TGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~ 568 (1172)
T KOG0926|consen 489 TGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAF 568 (1172)
T ss_pred eChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhh
Confidence 9999999999999760
Q ss_pred -----------------------------------CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC
Q 010762 374 -----------------------------------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 374 -----------------------------------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~ 418 (502)
.+.|.+|++-++...+.+++..-..|..-++|+|+++++.|.||+
T Consensus 569 ~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPg 648 (1172)
T KOG0926|consen 569 NALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPG 648 (1172)
T ss_pred hccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCC
Confidence 123788999999999999999888999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCC----------CCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCC
Q 010762 419 VNLIVNYDPPVKHGKHL----------EPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 488 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~----------~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 488 (502)
+.+||+.+.-....... +.|-.+--||+||+||.| +|+||.+|++. .+-..++++-..+|... +
T Consensus 649 IkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA---Vf~~~Fe~fS~PEIlk~--P 722 (1172)
T KOG0926|consen 649 IKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA---VFSNDFEEFSLPEILKK--P 722 (1172)
T ss_pred eeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH---HhhcchhhhccHHHhhC--c
Confidence 99999855432221111 124444579999999997 89999999854 34447888888888666 8
Q ss_pred HHHHHHHHHHcCC
Q 010762 489 DEDFKAALKAAGL 501 (502)
Q Consensus 489 ~~~~~~~~~~~~~ 501 (502)
.+.+..+||.|||
T Consensus 723 ve~lvLqMKsMnI 735 (1172)
T KOG0926|consen 723 VESLVLQMKSMNI 735 (1172)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999998
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1e-28 Score=252.20 Aligned_cols=327 Identities=16% Similarity=0.165 Sum_probs=231.6
Q ss_pred HhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHH-hccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGML-SRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 116 ~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il-~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
...+|.. |+++|...--.+..| -|+.+.||+|||+++.+|++ +.+ .+..+-|++||..||.|.++++..+
T Consensus 75 ~R~lg~~-~~dvQlig~l~L~~G----~Iaem~TGeGKTLva~lpa~l~aL----~G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 75 KRVLGMR-HFDVQLIGGMVLHEG----KIAEMKTGEGKTLVATLPAYLNAL----TGKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred HHHhCCC-CCccHHHhhHHhcCC----chhhhhcCCCcHHHHHHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 3335665 999999887777666 48999999999999999996 555 2345789999999999999999999
Q ss_pred hcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcCc------cCCCceEEEEEeCchhhhcccC---
Q 010762 195 GKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFSRLKILVYDEADHMLDEAG--- 264 (502)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~~~~lVlDEah~l~~~~~--- 264 (502)
...+|+++.++.++......... ..++|+++||++| .++++.+. .....+.++|+||||.|+-+..
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~----y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtp 221 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREA----YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTP 221 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHh----cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCc
Confidence 99999999988876554432211 2489999999999 88887654 2367899999999998652100
Q ss_pred ------------CHHHHHHHHHHhhhcC-----CC---------------------------------------------
Q 010762 265 ------------FRDDSLRIMKDIERSS-----GH--------------------------------------------- 282 (502)
Q Consensus 265 ------------~~~~~~~i~~~l~~~~-----~~--------------------------------------------- 282 (502)
....+..+...+.... ..
T Consensus 222 LiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~ 301 (830)
T PRK12904 222 LIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELF 301 (830)
T ss_pred eeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 0111112222221100 00
Q ss_pred ----------------------------------------------------------------eeEEEEeecCChhHHH
Q 010762 283 ----------------------------------------------------------------CQVLLFSATFNETVKN 298 (502)
Q Consensus 283 ----------------------------------------------------------------~q~v~~SAT~~~~~~~ 298 (502)
.++.+||+|......+
T Consensus 302 ~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E 381 (830)
T PRK12904 302 KRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEE 381 (830)
T ss_pred hcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHH
Confidence 0334445554333222
Q ss_pred HHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEE
Q 010762 299 FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 378 (502)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~ 378 (502)
+..-+ +. ..+.++. ..+................|...+...+......+.++||||+|+..++.++..|...|+++.
T Consensus 382 ~~~iY-~l-~vv~IPt-nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~ 458 (830)
T PRK12904 382 FREIY-NL-DVVVIPT-NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHN 458 (830)
T ss_pred HHHHh-CC-CEEEcCC-CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceE
Confidence 22222 11 1111111 111111221222333556788888887776666789999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCC--------------------------------------C
Q 010762 379 TIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV--------------------------------------N 420 (502)
Q Consensus 379 ~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v--------------------------------------~ 420 (502)
.+|+. +.+|+..+..|+.+...|+|||++++||+||+-- =
T Consensus 459 vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL 536 (830)
T PRK12904 459 VLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGL 536 (830)
T ss_pred eccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCC
Confidence 99996 7899999999999999999999999999999732 2
Q ss_pred EEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccH
Q 010762 421 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 468 (502)
Q Consensus 421 ~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~ 468 (502)
|||--..| .|..--.|-.||+||-|.+|.+..|++-+|+.
T Consensus 537 hVigTerh--------esrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 537 HVIGTERH--------ESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred EEEecccC--------chHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 45555555 77788899999999999999999888866553
No 96
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-28 Score=250.34 Aligned_cols=151 Identities=16% Similarity=0.173 Sum_probs=127.5
Q ss_pred ccCCCCCHHHHHHHHh----hCCCCCC---cHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeE
Q 010762 102 FEDLNLSPELLKGLYV----EMKFQKP---SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQA 174 (502)
Q Consensus 102 f~~~~l~~~l~~~l~~----~~g~~~p---~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~ 174 (502)
-+.+++.+++.+.+.. ..||..| +|+|.+++|.++.+ +++++.++||+|||++|++|++..+... ..+
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~--~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v 138 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMH--KGFITEMQTGEGKTLTAVMPLYLNALTG---KPV 138 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcC--CCeEEEeCCCCChHHHHHHHHHHHHhhc---CCe
Confidence 4567888999888862 3799999 99999999999999 9999999999999999999999877532 248
Q ss_pred EEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcCccCCC-------
Q 010762 175 LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKKLGFS------- 246 (502)
Q Consensus 175 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~~------- 246 (502)
+||+||++||.|..+++..+...+++++.+++++.....+... ..|||+|+||++| .++++.+.+.++
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~----y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI----YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH----cCCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 9999999999999999999999999999999887765443211 1489999999999 999988765554
Q ss_pred ceEEEEEeCchhhhc
Q 010762 247 RLKILVYDEADHMLD 261 (502)
Q Consensus 247 ~~~~lVlDEah~l~~ 261 (502)
.+.++|+||||.|+-
T Consensus 215 ~~~~~IIDEADsmLi 229 (970)
T PRK12899 215 GFYFAIIDEVDSILI 229 (970)
T ss_pred cccEEEEechhhhhh
Confidence 558999999998763
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.1e-29 Score=251.95 Aligned_cols=330 Identities=17% Similarity=0.199 Sum_probs=229.5
Q ss_pred HHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 114 ~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
+....+|.. |+++|..+--.+..| + |....||+|||+++.+|++.... .|..+-|++|+.-||.|-++++..
T Consensus 72 a~~R~~g~~-~~dvQlig~l~l~~G--~--iaEm~TGEGKTLvA~l~a~l~al---~G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 72 GAKRVLGLR-PFDVQIIGGIVLHEG--N--IAEMKTGEGKTLTATLPVYLNAL---TGKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred HHHHHhCCC-CchhHHHHHHHHhcC--C--cccccCCCCCcHHHHHHHHHHHH---cCCCeEEEeccHHHHHhhHHHHHH
Confidence 334446665 999999887777666 3 99999999999999888876653 566899999999999999999999
Q ss_pred hhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHH-HHHHcC------ccCCCceEEEEEeCchhhhcccC--
Q 010762 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK-KWMSAK------KLGFSRLKILVYDEADHMLDEAG-- 264 (502)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~------~~~~~~~~~lVlDEah~l~~~~~-- 264 (502)
+...+|+++.+..+...... +.....|||+++|...|- ++|+.+ ......+.+.|+||+|.++-+..
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~----r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeart 219 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDE----KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEART 219 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHH----HHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCC
Confidence 99999999988876543322 223336899999998763 333332 12245678999999997542100
Q ss_pred -------------CHHHHHHHHHHhhhcC----------------CC---------------------------------
Q 010762 265 -------------FRDDSLRIMKDIERSS----------------GH--------------------------------- 282 (502)
Q Consensus 265 -------------~~~~~~~i~~~l~~~~----------------~~--------------------------------- 282 (502)
+...+..+...+.... ..
T Consensus 220 PLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~ 299 (796)
T PRK12906 220 PLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAH 299 (796)
T ss_pred ceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHH
Confidence 0011112222111100 00
Q ss_pred ----------------------------------------------------------------------------eeEE
Q 010762 283 ----------------------------------------------------------------------------CQVL 286 (502)
Q Consensus 283 ----------------------------------------------------------------------------~q~v 286 (502)
.++.
T Consensus 300 ~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~ 379 (796)
T PRK12906 300 HIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLS 379 (796)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhh
Confidence 0223
Q ss_pred EEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHH
Q 010762 287 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASAL 366 (502)
Q Consensus 287 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l 366 (502)
+||+|......++ ....+. ..+.++. ..+..........+.....|...+...+......+.++||||+|+..++.+
T Consensus 380 GmTGTa~~e~~Ef-~~iY~l-~vv~IPt-nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~l 456 (796)
T PRK12906 380 GMTGTAKTEEEEF-REIYNM-EVITIPT-NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERL 456 (796)
T ss_pred ccCCCCHHHHHHH-HHHhCC-CEEEcCC-CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 3333333222222 111111 1111111 111111111122333456688888887776667899999999999999999
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC---CCC-----EEEEecCCCCCCCCCCCC
Q 010762 367 HKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ---QVN-----LIVNYDPPVKHGKHLEPD 438 (502)
Q Consensus 367 ~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~---~v~-----~VI~~~~p~~~~~~~~~s 438 (502)
+..|.+.|+++..+|+++.+.++..+...++.|. |+|||++++||+||+ +|. |||+++.| .|
T Consensus 457 s~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~p--------es 526 (796)
T PRK12906 457 SHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERH--------ES 526 (796)
T ss_pred HHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecC--------Cc
Confidence 9999999999999999998888887777777775 999999999999995 889 99999999 89
Q ss_pred ccchhhhhcccccCCCcceEEEEeeCCccH
Q 010762 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 468 (502)
Q Consensus 439 ~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~ 468 (502)
...|.|++||+||.|.+|.+..|++.+|+.
T Consensus 527 ~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l 556 (796)
T PRK12906 527 RRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 556 (796)
T ss_pred HHHHHHHhhhhccCCCCcceEEEEeccchH
Confidence 999999999999999999999999876653
No 98
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.9e-28 Score=248.77 Aligned_cols=333 Identities=18% Similarity=0.230 Sum_probs=236.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH-hhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+.++++|+||||||...-..+++... ..+..+.++-|+|-.|..+++.+.. ++...|-.+.+.+.. ...
T Consensus 66 ~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRf--------e~~ 135 (845)
T COG1643 66 QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRF--------ESK 135 (845)
T ss_pred CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEe--------ecc
Confidence 89999999999999975444444432 4455788888999999988887654 444445444444332 233
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHH-hhhcCCCeeEEEEeecCChhHHH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD-IERSSGHCQVLLFSATFNETVKN 298 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~-l~~~~~~~q~v~~SAT~~~~~~~ 298 (502)
....+.|-++|.|.|++.+..+.. ++.+++||+||+|+-.-+ .+.+..+++. +...++..++|+||||+...-
T Consensus 136 ~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~---tDilLgllk~~~~~rr~DLKiIimSATld~~r-- 209 (845)
T COG1643 136 VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLN---TDILLGLLKDLLARRRDDLKLIIMSATLDAER-- 209 (845)
T ss_pred CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHH---HHHHHHHHHHHHhhcCCCceEEEEecccCHHH--
Confidence 344578999999999999998776 999999999999976543 2334455555 333444689999999987542
Q ss_pred HHHHHhcCCceeeecccccccccceEEEEecCChHH-HHHHHHHHHHH-hcccCCcEEEEcCChhhHHHHHHHHHh----
Q 010762 299 FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELA-KVMVIRDRIFE-LGEKMGQTIIFVRTKNSASALHKALKD---- 372 (502)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~-~~~~~~~~lVF~~s~~~~~~l~~~L~~---- 372 (502)
+..++.+...+.+.....+ +...|........ -...+...+.. .....|.+|||.+...+++.+++.|..
T Consensus 210 -fs~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~ 285 (845)
T COG1643 210 -FSAYFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG 285 (845)
T ss_pred -HHHHcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc
Confidence 5556665555555443333 3333322222222 22223222222 344678999999999999999999987
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCC----------CCCCCccch
Q 010762 373 FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK----------HLEPDCEVY 442 (502)
Q Consensus 373 ~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~----------~~~~s~~~y 442 (502)
....++++||.++..++.++++.-..|..+|++||++++++|.||++.+||+-+.-..... ..+-|-.+.
T Consensus 286 ~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA 365 (845)
T COG1643 286 DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASA 365 (845)
T ss_pred CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhh
Confidence 3478999999999999999988888887889999999999999999999998444321111 123466778
Q ss_pred hhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc-CCHHHHHHHHHHcCC
Q 010762 443 LHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKAAGL 501 (502)
Q Consensus 443 ~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 501 (502)
.||.||+||.+ +|.||.+|+.. .+..+......|+- .++..+...|+.+|+
T Consensus 366 ~QRaGRAGR~~-pGicyRLyse~-------~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~ 417 (845)
T COG1643 366 DQRAGRAGRTG-PGICYRLYSEE-------DFLAFPEFTLPEILRTDLSGLVLQLKSLGI 417 (845)
T ss_pred hhhccccccCC-CceEEEecCHH-------HHHhcccCCChhhhhcchHHHHHHHHhcCC
Confidence 99999999995 99999999842 22344444444444 689999999998885
No 99
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.9e-28 Score=231.50 Aligned_cols=343 Identities=18% Similarity=0.215 Sum_probs=245.8
Q ss_pred hhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC-CCCeEEEecCcHHHHHHHHHHHH-HhhcccCceeeEeec
Q 010762 130 ISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL-KAPQALCICPTRELAIQNLEVLR-KMGKHTGITSECAVP 207 (502)
Q Consensus 130 ~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~-~~~~~lil~Pt~~La~q~~~~~~-~~~~~~~~~~~~~~~ 207 (502)
+.+.++-.. +.+||.|.||||||.. +|-+-+-.... .+.++-+..|+|..|..++..+. ..+..+|-.+.+.+.
T Consensus 272 ell~av~e~--QVLiI~GeTGSGKTTQ--iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIR 347 (902)
T KOG0923|consen 272 ELLKAVKEH--QVLIIVGETGSGKTTQ--IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIR 347 (902)
T ss_pred HHHHHHHhC--cEEEEEcCCCCCcccc--ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEE
Confidence 344444445 8999999999999995 34332211112 23347888899999999887554 444444444433332
Q ss_pred CCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEE
Q 010762 208 TDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLL 287 (502)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~ 287 (502)
. .......+-|-++|.|+|++-+.... .+.+++++|+||||.-.- ..+.+..+++.+.+.++..++++
T Consensus 348 F--------EdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL---~TDILfgLvKDIar~RpdLKllI 415 (902)
T KOG0923|consen 348 F--------EDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTL---HTDILFGLVKDIARFRPDLKLLI 415 (902)
T ss_pred e--------ccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhh---hhhHHHHHHHHHHhhCCcceEEe
Confidence 2 22333456799999999998877654 489999999999997543 24667788888888889999999
Q ss_pred EeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHH--hcccCCcEEEEcCChhhHHH
Q 010762 288 FSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFE--LGEKMGQTIIFVRTKNSASA 365 (502)
Q Consensus 288 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~~~lVF~~s~~~~~~ 365 (502)
.|||+... .+..++.+...+.++.... .+..+|...+....--..+.. +.+ .-++.+.+|||....++.+.
T Consensus 416 sSAT~DAe---kFS~fFDdapIF~iPGRRy---PVdi~Yt~~PEAdYldAai~t-VlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 416 SSATMDAE---KFSAFFDDAPIFRIPGRRY---PVDIFYTKAPEADYLDAAIVT-VLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred eccccCHH---HHHHhccCCcEEeccCccc---ceeeecccCCchhHHHHHHhh-heeeEeccCCccEEEEeccHHHHHH
Confidence 99998743 2455665544444433333 344555555554443333333 332 23467899999999999888
Q ss_pred HHHHHHhC---------CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCC---
Q 010762 366 LHKALKDF---------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK--- 433 (502)
Q Consensus 366 l~~~L~~~---------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~--- 433 (502)
....|.+. .+-++++|+.++...+..+++.-.+|-.+|++||+++++.|.|+++.+||+-++....+.
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 77776542 356889999999999999999989999999999999999999999999998555432211
Q ss_pred ----C---CCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHHHHHHHHHcCC
Q 010762 434 ----H---LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDFKAALKAAGL 501 (502)
Q Consensus 434 ----~---~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 501 (502)
. .|-|-.+..||.||+||.| +|+|+.+|+ .+.+...++..--.+|++- ++.++...|+..||
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt---~~aY~~eLE~~t~PEIqRt--nL~nvVL~LkSLGI 637 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT---AWAYEHELEEMTVPEIQRT--NLGNVVLLLKSLGI 637 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCC-CCceEEeec---hhhhhhhhccCCCcceeec--cchhHHHHHHhcCc
Confidence 1 2446677799999999997 999999997 3456666766666666665 89999999999987
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=6.9e-27 Score=241.71 Aligned_cols=325 Identities=15% Similarity=0.180 Sum_probs=229.0
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
.++|. |-++|+.++-.+.+| .+++++||||||||++.-.++...+. .+.+++++.|.++|.+|.++.+....+.
T Consensus 115 ~~~F~-LD~fQ~~a~~~Ler~--esVlV~ApTssGKTvVaeyAi~~al~---~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 115 EYPFE-LDPFQQEAIAILERG--ESVLVCAPTSSGKTVVAEYAIALALR---DGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred hCCCC-cCHHHHHHHHHHhCC--CcEEEEccCCCCcchHHHHHHHHHHH---cCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 37887 889999999999999 99999999999999998887776664 3446999999999999999988776554
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhh
Q 010762 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277 (502)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~ 277 (502)
..-.+....|+.. ...++.++|+|.+.|..++..+...+..+.+||+||+|.|.+. .-.-.+..++-.++
T Consensus 189 v~~~vGL~TGDv~---------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~-eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDVS---------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR-ERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceeccee---------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc-ccchhHHHHHHhcC
Confidence 3111122333322 2235789999999999999998778999999999999999872 34445566666666
Q ss_pred hcCCCeeEEEEeecCChhHH--HHHHHHhcCCceeeecccccccccceEEEEecC------ChHHH--------H-HH--
Q 010762 278 RSSGHCQVLLFSATFNETVK--NFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP------DELAK--------V-MV-- 338 (502)
Q Consensus 278 ~~~~~~q~v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~k--------~-~~-- 338 (502)
. ..+++++|||.|...+ .++...-..+..+. ..+..+..+.+++..-. ++..+ . ..
T Consensus 259 ~---~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv--~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 259 D---HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVV--STEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred C---CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEE--eecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 5 7799999999986543 33332222222222 22222333333222110 00000 0 00
Q ss_pred ------------------------------------HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC---------
Q 010762 339 ------------------------------------IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--------- 373 (502)
Q Consensus 339 ------------------------------------l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------- 373 (502)
+...+. ....-++|+|+-|++.|+..+..+...
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~--~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLD--KDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhh--hhcCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 001000 123458999999999999998776521
Q ss_pred -------------------CC-------------cEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCE
Q 010762 374 -------------------GY-------------EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL 421 (502)
Q Consensus 374 -------------------~~-------------~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~ 421 (502)
++ .+..+|++|-+..+..+.+.|..|-.+|+++|.+++.|+|+|.-++
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartv 491 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTV 491 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccce
Confidence 11 1458899999999999999999999999999999999999997666
Q ss_pred EEEecCCCCCCCCCCCCccchhhhhcccccCCC--cceEEEEeeCC
Q 010762 422 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDG 465 (502)
Q Consensus 422 VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~--~g~~~~~~~~~ 465 (502)
|+--=.-|++..++.-+..+|.|+.||+||.|. .|.++++-.+.
T Consensus 492 v~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 492 VFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 664222334445566788999999999999985 58888774443
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=3.8e-27 Score=253.09 Aligned_cols=306 Identities=17% Similarity=0.204 Sum_probs=193.6
Q ss_pred CCcHHHHhhhhhhcC----CCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 123 KPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~----~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.++++|..||..+.. | .+.++++++||||||.++ +.++.++.......++|||+|+++|+.|+...|..+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g-~r~~Ll~maTGSGKT~ta-i~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEG-QREILLAMATGTGKTRTA-IALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhc-cCCeEEEeCCCCCHHHHH-HHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 589999999988753 3 378999999999999984 4444555444445699999999999999999998864322
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-----ccCCCceEEEEEeCchhhhc--------ccCC
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-----KLGFSRLKILVYDEADHMLD--------EAGF 265 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~~~~~~~lVlDEah~l~~--------~~~~ 265 (502)
.......++..... .........|+|+|.+.|...+... ...+..+++||+||||+-.. +.+|
T Consensus 491 ~~~~~~i~~i~~L~----~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 491 DQTFASIYDIKGLE----DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccchhhhhchhhhh----hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 21111111100000 0111224689999999997765321 13467889999999998531 1111
Q ss_pred ------HHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecc----ccccc-----ccceE------
Q 010762 266 ------RDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKK----EELSL-----ESVKQ------ 324 (502)
Q Consensus 266 ------~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~------ 324 (502)
...+..++..+ +...|+||||+......+ +..+...+.-. +.... ..+..
T Consensus 567 ~~~~~~~~~yr~iL~yF-----dA~~IGLTATP~r~t~~~----FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYF-----DAVKIGLTATPALHTTEI----FGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred chhhhHHHHHHHHHhhc-----CccEEEEecCCccchhHH----hCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 12334444433 346799999986433222 22221110000 00000 00000
Q ss_pred -----------E------E--EecCCh----HH----------HHHHHHHHHHHhc--ccCCcEEEEcCChhhHHHHHHH
Q 010762 325 -----------Y------K--VYCPDE----LA----------KVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKA 369 (502)
Q Consensus 325 -----------~------~--~~~~~~----~~----------k~~~l~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~ 369 (502)
+ . ...+.. .. ....+...+.... ...+++||||.++++|..+++.
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 0 0 000000 00 0011111122221 1347999999999999999988
Q ss_pred HHhC------C---CcEEEecCCCCHHHHHHHHHHHHcCCC-eEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCc
Q 010762 370 LKDF------G---YEVTTIMGATIQEERDKIVKEFKDGLT-QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDC 439 (502)
Q Consensus 370 L~~~------~---~~~~~l~~~~~~~~r~~~~~~f~~~~~-~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~ 439 (502)
|.+. + ..+..+||+++ .+..++++|+++.. .|+|+++++.+|+|+|.+.+||++.++ .|.
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpv--------kS~ 787 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV--------RSR 787 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCC--------CCH
Confidence 7653 2 24667899885 56789999999886 699999999999999999999999999 889
Q ss_pred cchhhhhcccccCC
Q 010762 440 EVYLHRIGRAGRFG 453 (502)
Q Consensus 440 ~~y~qr~GR~~R~g 453 (502)
..|.||+||+.|..
T Consensus 788 ~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 788 ILYEQMLGRATRLC 801 (1123)
T ss_pred HHHHHHHhhhccCC
Confidence 99999999999964
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=9.1e-27 Score=237.36 Aligned_cols=328 Identities=17% Similarity=0.158 Sum_probs=224.6
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
.+|.. |+++|...--.+..| -|+.++||.|||+++.+|++.... .+..+.||+|+..||.|..+++..+...
T Consensus 78 ~lgm~-~ydVQliGgl~L~~G----~IaEm~TGEGKTL~a~lp~~l~al---~g~~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 78 VFEMR-HFDVQLLGGMVLDSN----RIAEMRTGEGKTLTATLPAYLNAL---TGKGVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred HhCCC-cCchHHhcchHhcCC----ccccccCCCCchHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 35655 889998766655555 689999999999999999986654 3445999999999999999999999999
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcC-ccCC-----CceEEEEEeCchhhhcccC------
Q 010762 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK-KLGF-----SRLKILVYDEADHMLDEAG------ 264 (502)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~-~~~~-----~~~~~lVlDEah~l~~~~~------ 264 (502)
+|+++.+..++... ..+.....|||+++||+.| .++++.+ .+.. ..+.++|+||||.++-+..
T Consensus 150 lGlsv~~i~~~~~~----~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLII 225 (908)
T PRK13107 150 LGLTVGINVAGLGQ----QEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLII 225 (908)
T ss_pred cCCeEEEecCCCCH----HHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceee
Confidence 99999988776543 2233344689999999999 8888775 3333 6789999999998764211
Q ss_pred ---------CHHHHHHHHHHhhhcC----------------CCeeEEEEeecCChhHHHH--------------------
Q 010762 265 ---------FRDDSLRIMKDIERSS----------------GHCQVLLFSATFNETVKNF-------------------- 299 (502)
Q Consensus 265 ---------~~~~~~~i~~~l~~~~----------------~~~q~v~~SAT~~~~~~~~-------------------- 299 (502)
+...+..++..+.... ...+.+.+|-.=...+..+
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~ 305 (908)
T PRK13107 226 SGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANIS 305 (908)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhH
Confidence 1111222222222100 0111222221000000000
Q ss_pred ----H----H--HHhcCCcee--------eecc-----------------------------------------------
Q 010762 300 ----V----T--RIVKDYNQL--------FVKK----------------------------------------------- 314 (502)
Q Consensus 300 ----~----~--~~~~~~~~~--------~~~~----------------------------------------------- 314 (502)
+ . .++.....+ .++.
T Consensus 306 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (908)
T PRK13107 306 LLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYE 385 (908)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhh
Confidence 0 0 000000000 0000
Q ss_pred ----------------------------cccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHH
Q 010762 315 ----------------------------EELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASAL 366 (502)
Q Consensus 315 ----------------------------~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l 366 (502)
...+..........+.....|...+...+......+.++||||+|+..++.+
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~l 465 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELL 465 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHH
Confidence 0000000001111122356777788877877777899999999999999999
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCC---------------------------
Q 010762 367 HKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV--------------------------- 419 (502)
Q Consensus 367 ~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v--------------------------- 419 (502)
+.+|...++.+..+|+.+++.++..+.+.|+.|. |+|||++++||+||.--
T Consensus 466 s~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (908)
T PRK13107 466 ARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQI 543 (908)
T ss_pred HHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 99999999999998721
Q ss_pred ----------CEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 420 ----------NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 420 ----------~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
=|||--..+ .|..--.|-.||+||-|.+|.+..|++-+|+
T Consensus 544 ~~~~V~~~GGL~VIgTerh--------eSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 544 RHDEVVAAGGLHILGTERH--------ESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred hHHHHHHcCCCEEEecccC--------chHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 245544444 6777788999999999999999988886655
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.2e-26 Score=203.06 Aligned_cols=312 Identities=16% Similarity=0.190 Sum_probs=212.3
Q ss_pred CCcHHHHhhhhhhcCC--CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCc
Q 010762 123 KPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (502)
++||.|+.+-..++.. +..+.+++|-||+|||-. +++.++... ..|.++.|.+|+...|..++..++......++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al--~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I 173 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQAL--NQGGRVCIASPRVDVCLELYPRLKQAFSNCDI 173 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHH--hcCCeEEEecCcccchHHHHHHHHHhhccCCe
Confidence 5899999887766542 248999999999999987 444554443 35678999999999999999999887765444
Q ss_pred eeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC
Q 010762 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~ 280 (502)
.++++++.... ..+++|+|...|+++-+. ++++|+||+|..--. ....+...++.-.+
T Consensus 174 --~~Lyg~S~~~f---------r~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~--~d~~L~~Av~~ark-- 231 (441)
T COG4098 174 --DLLYGDSDSYF---------RAPLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFS--DDQSLQYAVKKARK-- 231 (441)
T ss_pred --eeEecCCchhc---------cccEEEEehHHHHHHHhh-------ccEEEEecccccccc--CCHHHHHHHHHhhc--
Confidence 45666553322 257999999999886553 678999999965321 11222222222221
Q ss_pred CCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH------HHHHHHHHhcccCCcEE
Q 010762 281 GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM------VIRDRIFELGEKMGQTI 354 (502)
Q Consensus 281 ~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~------~l~~~l~~~~~~~~~~l 354 (502)
..--++++|||.++.++..+..- +...+.+........-....++.+..-..++. .+...+......+.+++
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 24468999999998776544332 22222232222222222223334433333332 34455556666789999
Q ss_pred EEcCChhhHHHHHHHHHh-CC-CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCC
Q 010762 355 IFVRTKNSASALHKALKD-FG-YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHG 432 (502)
Q Consensus 355 VF~~s~~~~~~l~~~L~~-~~-~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~ 432 (502)
||+++++..+.++..|+. .+ ..+...|+.. ..|.+.+++|++|+..+||+|.+++||+.+|+|++.+. +.-
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-gae---- 382 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL-GAE---- 382 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-cCC----
Confidence 999999999999999954 33 3557888865 67899999999999999999999999999999999663 222
Q ss_pred CCCCCCccchhhhhcccccCC--CcceEEEEeeCCccHHH
Q 010762 433 KHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDGDDMII 470 (502)
Q Consensus 433 ~~~~~s~~~y~qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 470 (502)
+...+-+..+|..||+||.- ..|.++.|.. +-...+
T Consensus 383 -h~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~-G~skaM 420 (441)
T COG4098 383 -HRVFTESALVQIAGRVGRSLERPTGDVLFFHY-GKSKAM 420 (441)
T ss_pred -cccccHHHHHHHhhhccCCCcCCCCcEEEEec-cchHHH
Confidence 12256778999999999974 3577765543 444433
No 104
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=221.17 Aligned_cols=334 Identities=16% Similarity=0.222 Sum_probs=230.1
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH-HhhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR-KMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+-++|.++||||||... |-+-+.......+.+.+..|+|..|..+++.+. +++..+|-.+.+.+... ..
T Consensus 372 ~vvvivgETGSGKTTQl--~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFE--------dv 441 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQL--AQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFE--------DV 441 (1042)
T ss_pred cEEEEEecCCCCchhhh--HHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEee--------ec
Confidence 88999999999999963 322222233344466677799999999998665 45445555444444332 22
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNF 299 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~ 299 (502)
....+-|-++|.|.|++..-... .+..+++||+||||.-.-+ .+.+..+++.....+.+.++|+.|||+... .
T Consensus 442 T~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslN---tDilfGllk~~larRrdlKliVtSATm~a~---k 514 (1042)
T KOG0924|consen 442 TSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLN---TDILFGLLKKVLARRRDLKLIVTSATMDAQ---K 514 (1042)
T ss_pred CCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccc---hHHHHHHHHHHHHhhccceEEEeeccccHH---H
Confidence 22346799999999987665544 4889999999999976543 355666777766666688999999998643 2
Q ss_pred HHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHH-HhcccCCcEEEEcCChhhHHHHHHHHHh----C-
Q 010762 300 VTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF-ELGEKMGQTIIFVRTKNSASALHKALKD----F- 373 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~- 373 (502)
+..++++...+.+.....+ +...+...+.+..--..+.+.+. ......+.+|||....+.++-.+..++. .
T Consensus 515 f~nfFgn~p~f~IpGRTyP---V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~ 591 (1042)
T KOG0924|consen 515 FSNFFGNCPQFTIPGRTYP---VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLD 591 (1042)
T ss_pred HHHHhCCCceeeecCCccc---eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhh
Confidence 4555664444444333333 23333333333222222222111 1233558899999998876665555443 2
Q ss_pred -----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCC-------CCCC---CCCCC
Q 010762 374 -----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV-------KHGK---HLEPD 438 (502)
Q Consensus 374 -----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~-------~~~~---~~~~s 438 (502)
++.+..+++.|++.-+.+++..-..|..+++|||+++++.|.+|++.+||..++.. .+.+ ..|-|
T Consensus 592 ~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 592 SAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred cCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 67899999999999999998888889999999999999999999999999855432 1111 12456
Q ss_pred ccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc-CCHHHHHHHHHHcCC
Q 010762 439 CEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALKAAGL 501 (502)
Q Consensus 439 ~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 501 (502)
-...-||.||+||.| +|.||.+|+.. ....+++...+.++. -++.++...|+..|+
T Consensus 672 ~AnA~QRaGRAGRt~-pG~cYRlYTe~------ay~~eml~stvPEIqRTNl~nvVLlLkslgV 728 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTG-PGTCYRLYTED------AYKNEMLPSTVPEIQRTNLSNVVLLLKSLGV 728 (1042)
T ss_pred hccchhhccccCCCC-Ccceeeehhhh------HHHhhcccCCCchhhhcchhhHHHHHHhcCh
Confidence 677789999999996 99999999842 234666766666665 688888888888775
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=230.30 Aligned_cols=346 Identities=19% Similarity=0.203 Sum_probs=235.9
Q ss_pred CCCHHHHHHHHhhCCCCCCcHHHHhhh--hhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 106 NLSPELLKGLYVEMKFQKPSKIQAISL--PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 106 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i--~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
.+++.+........|....+.||..++ |.++.+ +++|..+||+.|||++..+-++..+... ...++.+.|....
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~--~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsi 281 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLER--KNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSI 281 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcc--cceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeeh
Confidence 445555555555579999999999887 778876 9999999999999999999888776543 3368999999999
Q ss_pred HHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc--CccCCCceEEEEEeCchhhhc
Q 010762 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA--KKLGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 184 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lVlDEah~l~~ 261 (502)
++.-...+..++...|+.+.+..|..... ......++.|||.++-..++.. ..-.+..+++||+||.|.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPE------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCC------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 88888889999999998887777443222 2223468999999987665544 223467789999999999887
Q ss_pred ccCCHHHHHHHHHHhhh--cCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccccccc-ccce-EEEEecCChHHHH-
Q 010762 262 EAGFRDDSLRIMKDIER--SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSL-ESVK-QYKVYCPDELAKV- 336 (502)
Q Consensus 262 ~~~~~~~~~~i~~~l~~--~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~k~- 336 (502)
. +....+..++..+.- .....|+|+||||+++.- .+..++....+..- .....+ ..+. -..++......-+
T Consensus 356 ~-~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~-fRPv~L~E~ik~G~~i~~~~r~~~lr 431 (1008)
T KOG0950|consen 356 K-GRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTR-FRPVPLKEYIKPGSLIYESSRNKVLR 431 (1008)
T ss_pred c-ccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheecc-cCcccchhccCCCcccccchhhHHHH
Confidence 3 555555555544432 222367999999998431 12333322111110 000000 0000 0001111000000
Q ss_pred ---------------HHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh-----------------------------
Q 010762 337 ---------------MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----------------------------- 372 (502)
Q Consensus 337 ---------------~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----------------------------- 372 (502)
..+..+..+....+.++||||+++..|+.++..+..
T Consensus 432 ~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~ 511 (1008)
T KOG0950|consen 432 EIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPG 511 (1008)
T ss_pred HhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCc
Confidence 111111222333456799999999999998865543
Q ss_pred ---------CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchh
Q 010762 373 ---------FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYL 443 (502)
Q Consensus 373 ---------~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~ 443 (502)
....++.+|++++.++|+.+...|++|...|++||+.++.|+++|..+++|- .|.-+... .+..+|.
T Consensus 512 ~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir--aP~~g~~~--l~~~~Yk 587 (1008)
T KOG0950|consen 512 ILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR--APYVGREF--LTRLEYK 587 (1008)
T ss_pred ccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe--CCccccch--hhhhhHH
Confidence 1234789999999999999999999999999999999999999998888874 34333222 4677899
Q ss_pred hhhcccccCCC--cceEEEEeeCCccHH
Q 010762 444 HRIGRAGRFGR--KGVVFNLLMDGDDMI 469 (502)
Q Consensus 444 qr~GR~~R~g~--~g~~~~~~~~~~~~~ 469 (502)
||+|||||+|- .|.+++++...+...
T Consensus 588 QM~GRAGR~gidT~GdsiLI~k~~e~~~ 615 (1008)
T KOG0950|consen 588 QMVGRAGRTGIDTLGDSILIIKSSEKKR 615 (1008)
T ss_pred hhhhhhhhcccccCcceEEEeeccchhH
Confidence 99999999984 689999998665433
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=9.2e-26 Score=237.94 Aligned_cols=322 Identities=17% Similarity=0.159 Sum_probs=209.5
Q ss_pred CCcHHHHhhhhhhcC--CCCccEEEECcCCCcchhHhHHHHHhccC-CCCCCCeEEEecCcHHHHHHHHHHHHHhhcccC
Q 010762 123 KPSKIQAISLPMILT--PPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~--~~~~~~lv~a~TGsGKTl~~l~~il~~l~-~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (502)
.+.|+|..++.+++. .++.+.|++.++|.|||+..+. ++..+. .......+|||||. .+..||.+.+.+++...
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l- 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVL- 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCC-
Confidence 578999999988753 1237899999999999998543 343332 22334578999997 57799999999987543
Q ss_pred ceeeEeecCCCCCcc-cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 200 ITSECAVPTDSTNYV-PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~-~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
.+..+++....... ..........+|+|+|++.+..... .+.-..+++|||||||++.+. .......+..+..
T Consensus 246 -~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~---~Sklskalr~L~a 319 (1033)
T PLN03142 246 -RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE---NSLLSKTMRLFST 319 (1033)
T ss_pred -ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH---HHHHHHHHHHhhc
Confidence 33334433211110 0011123357899999998866432 222335679999999998763 2223344444432
Q ss_pred cCCCeeEEEEeecCCh-hHHHHHHHH-hcCCcee--------------------------------eecc--cc--cccc
Q 010762 279 SSGHCQVLLFSATFNE-TVKNFVTRI-VKDYNQL--------------------------------FVKK--EE--LSLE 320 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~-~~~~~~~~~-~~~~~~~--------------------------------~~~~--~~--~~~~ 320 (502)
...+++|||+-. .+.++...+ +..|..+ .+.. .. ..++
T Consensus 320 ----~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 320 ----NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred ----CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 246899999531 111110000 0000000 0000 00 0000
Q ss_pred cceEEEEecC--------------------------------------------------------------ChHHHHHH
Q 010762 321 SVKQYKVYCP--------------------------------------------------------------DELAKVMV 338 (502)
Q Consensus 321 ~~~~~~~~~~--------------------------------------------------------------~~~~k~~~ 338 (502)
......+.+. ....|+..
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 0000011110 11244555
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC---CCeEEEEcCccccCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG---LTQVLISTDVLARGFD 415 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~---~~~iLv~T~~~~~Gld 415 (502)
+..++......+.++|||++.......|..+|...++.++.+||+++..+|..+++.|+.. ...+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 5555555566778999999999999999999999999999999999999999999999753 2457899999999999
Q ss_pred CCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcce--EEEEeeCC
Q 010762 416 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV--VFNLLMDG 465 (502)
Q Consensus 416 i~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~--~~~~~~~~ 465 (502)
++.+++||+||++| ++..+.|++||+.|.|+... ++.|++.+
T Consensus 556 Lt~Ad~VIiyD~dW--------NP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 556 LATADIVILYDSDW--------NPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred hhhCCEEEEeCCCC--------ChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999996 56779999999999998654 45566543
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1.2e-26 Score=202.21 Aligned_cols=168 Identities=31% Similarity=0.446 Sum_probs=137.5
Q ss_pred cHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeE
Q 010762 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSEC 204 (502)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 204 (502)
||+|.++++.+++| +++++.||||+|||++|++++++.+... +..+++|++|+++|+.|+.+.+..++...++.+..
T Consensus 1 t~~Q~~~~~~i~~~--~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISG--KNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTT--SEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcC--CCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccc
Confidence 79999999999987 9999999999999999999999988765 55699999999999999999999998887777777
Q ss_pred eecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCee
Q 010762 205 AVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284 (502)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q 284 (502)
.+++...... .......+++|+|+||++|.+++......+.++++||+||+|.+... .+...+..++..+.... +.|
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~-~~~ 154 (169)
T PF00270_consen 78 LHGGQSISED-QREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFK-NIQ 154 (169)
T ss_dssp ESTTSCHHHH-HHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTT-TSE
T ss_pred cccccccccc-ccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCC-CCc
Confidence 7665542211 11111345899999999999999986557778999999999999985 77888888888875543 578
Q ss_pred EEEEeecCChhHHH
Q 010762 285 VLLFSATFNETVKN 298 (502)
Q Consensus 285 ~v~~SAT~~~~~~~ 298 (502)
++++|||++..+++
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999966554
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=2.7e-25 Score=233.04 Aligned_cols=328 Identities=17% Similarity=0.212 Sum_probs=221.1
Q ss_pred CCcHHHHhhhhhhcCCC-Cc-cEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhhcccC
Q 010762 123 KPSKIQAISLPMILTPP-YR-NLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~-~~-~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (502)
.+.+.|..++..+++.. .. .+++.||||+|||.+.+.+++..+.. .....+++++.|++.++.++++.++.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 35889999999887753 24 79999999999999999999888765 34677999999999999999999998776554
Q ss_pred ceeeEeecCCCCCccc------------ccCCCCCCCeEEEeCchHHHHHHHcC-ccC---CCceEEEEEeCchhhhccc
Q 010762 200 ITSECAVPTDSTNYVP------------ISKRPPVTAQVVIGTPGTIKKWMSAK-KLG---FSRLKILVYDEADHMLDEA 263 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~---~~~~~~lVlDEah~l~~~~ 263 (502)
+.....++........ ..........+.++||-......... ... .-..+.+||||+|.+-.+.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 4332111111111000 00011112345555555444321111 111 1234689999999887742
Q ss_pred CCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHH--HHHHH
Q 010762 264 GFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV--MVIRD 341 (502)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~l~~ 341 (502)
....+..++..+... ...++++|||+|+.+...+...+.....+...........-.............. .....
T Consensus 355 -~~~~l~~~i~~l~~~--g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 355 -MLAALLALLEALAEA--GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred -hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhh
Confidence 444444555554433 5679999999999999998888776555444322000000000000000000011 12223
Q ss_pred HHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHH----cCCCeEEEEcCccccCCCCC
Q 010762 342 RIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFK----DGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 342 ~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~----~~~~~iLv~T~~~~~Gldi~ 417 (502)
.+......+++++|.|||+..|..++..|+..+.+++.+||.+...+|.+.++.+. .+...|+|||++++.|+|+
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi- 510 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI- 510 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-
Confidence 34445567899999999999999999999998878999999999999998887654 5677899999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC--CcceEEEEeeC
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMD 464 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g--~~g~~~~~~~~ 464 (502)
+.+++|--=.| +...+||+||++|.| ..|.++++...
T Consensus 511 dfd~mITe~aP----------idSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 511 DFDVLITELAP----------IDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred ccCeeeecCCC----------HHHHHHHHHHHhhcccccCCceeEeecc
Confidence 58998865555 788999999999999 56777766654
No 109
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.2e-24 Score=219.49 Aligned_cols=288 Identities=20% Similarity=0.297 Sum_probs=199.5
Q ss_pred hhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 117 ~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
+..|| .|+..|+...-.++.| +++-+.||||.|||.--++..+-.. .++.+++||+||..|+.|+++.+.+++.
T Consensus 77 k~~G~-~~ws~QR~WakR~~rg--~SFaiiAPTGvGKTTfg~~~sl~~a---~kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 77 KATGF-RPWSAQRVWAKRLVRG--KSFAIIAPTGVGKTTFGLLMSLYLA---KKGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred HhhCC-CchHHHHHHHHHHHcC--CceEEEcCCCCchhHHHHHHHHHHH---hcCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 33466 7999999999999999 9999999999999986444333221 3557999999999999999999999987
Q ss_pred ccC-ceeeEeecCC-C--CCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc----------
Q 010762 197 HTG-ITSECAVPTD-S--TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE---------- 262 (502)
Q Consensus 197 ~~~-~~~~~~~~~~-~--~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~---------- 262 (502)
..+ ..+...+.+. . .......+...++.||+|+|.+-|...+.. +.--+++++++|++|.++..
T Consensus 151 ~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL~L 228 (1187)
T COG1110 151 DAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLLRL 228 (1187)
T ss_pred hcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHHHH
Confidence 666 3332222111 1 112234455666799999998887765554 11236889999999976542
Q ss_pred cCCHHHHH----H---HHHHhh---------------------hcCCCeeEEEEeecCChhH-HH-HHHHHhcCCceeee
Q 010762 263 AGFRDDSL----R---IMKDIE---------------------RSSGHCQVLLFSATFNETV-KN-FVTRIVKDYNQLFV 312 (502)
Q Consensus 263 ~~~~~~~~----~---i~~~l~---------------------~~~~~~q~v~~SAT~~~~~-~~-~~~~~~~~~~~~~~ 312 (502)
.||.+... . +...+. ......++++.|||..+.- +. +++.+++ +.+
T Consensus 229 lGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----Fev 304 (1187)
T COG1110 229 LGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEV 304 (1187)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----Ccc
Confidence 34444211 1 111110 0112358999999976432 22 2233332 233
Q ss_pred cccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCC---hhhHHHHHHHHHhCCCcEEEecCCCCHHHH
Q 010762 313 KKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRT---KNSASALHKALKDFGYEVTTIMGATIQEER 389 (502)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s---~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r 389 (502)
......+.++...++.. ....+...++ .. -+...|||++. ++.++.++++|+..|+++..+|+. .
T Consensus 305 G~~~~~LRNIvD~y~~~-~~~e~~~elv---k~---lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 305 GSGGEGLRNIVDIYVES-ESLEKVVELV---KK---LGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred CccchhhhheeeeeccC-ccHHHHHHHH---HH---hCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----c
Confidence 44455566777776665 3333333332 22 24578999999 999999999999999999999984 2
Q ss_pred HHHHHHHHcCCCeEEEEc----CccccCCCCC-CCCEEEEecCC
Q 010762 390 DKIVKEFKDGLTQVLIST----DVLARGFDQQ-QVNLIVNYDPP 428 (502)
Q Consensus 390 ~~~~~~f~~~~~~iLv~T----~~~~~Gldi~-~v~~VI~~~~p 428 (502)
...++.|..|++++||.. .++-||||+| .++++|+|+.|
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 678999999999999886 6789999999 59999999999
No 110
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=220.82 Aligned_cols=322 Identities=19% Similarity=0.253 Sum_probs=226.4
Q ss_pred HHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH-HhhcccCceeeE
Q 010762 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR-KMGKHTGITSEC 204 (502)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~-~~~~~~~~~~~~ 204 (502)
..+...+..+.+. +.++|.|.||+|||...--.+++.........++++..|+|--|..+++.+. +.+...+-.+.+
T Consensus 176 ~~r~~Il~~i~~~--qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 176 KMRDTILDAIEEN--QVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred HHHHHHHHHHHhC--ceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 4455566666666 9999999999999998777777776544567788888899999999998664 344444444444
Q ss_pred eecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCee
Q 010762 205 AVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284 (502)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q 284 (502)
.+... ........+++||.|.|++.+..+. .+..+.+||+||+|.-.-+..| +..+++.+...++..+
T Consensus 254 qvrl~--------~~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~Df---lLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 254 QVRLE--------SKRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDF---LLILLKDLLPRNPDLK 321 (924)
T ss_pred EEeee--------cccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCccc---HHHHHHHHhhhCCCce
Confidence 33322 2333347899999999999998844 4889999999999987655444 4555666666667999
Q ss_pred EEEEeecCChhHHHHHHHHhcCCceeeeccccccccc----------------ceEEE-----------EecCChHHHHH
Q 010762 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES----------------VKQYK-----------VYCPDELAKVM 337 (502)
Q Consensus 285 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~-----------~~~~~~~~k~~ 337 (502)
+|+||||+..+ .+..++.....+.+.....+... ..+.. ..+........
T Consensus 322 vILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 99999998733 35555555444444322211100 00000 00001112233
Q ss_pred HHHHHHHHh--cccCCcEEEEcCChhhHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC
Q 010762 338 VIRDRIFEL--GEKMGQTIIFVRTKNSASALHKALKDF-------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 408 (502)
Q Consensus 338 ~l~~~l~~~--~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~ 408 (502)
.+..++... ....+.+|||.++..++..+.+.|... .+-+.++|+.|+..++..++.....|..+|+++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 333322222 235689999999999999999999642 25678999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEE--------ecCCCCCCC--CCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 409 VLARGFDQQQVNLIVN--------YDPPVKHGK--HLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 409 ~~~~Gldi~~v~~VI~--------~~~p~~~~~--~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
+++.+|.|++|-+||+ ||+-..... ..+-|...-.||.||+||. +.|.||.+++..
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 9999999999999997 443322211 1134666779999999998 799999999754
No 111
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=4.4e-23 Score=220.97 Aligned_cols=380 Identities=17% Similarity=0.150 Sum_probs=221.3
Q ss_pred CHHHHHHHHhhCCCCCCcHHHHhhhh----hhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 108 SPELLKGLYVEMKFQKPSKIQAISLP----MILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 108 ~~~l~~~l~~~~g~~~p~~~Q~~~i~----~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
++...+.+.. .||. ++|.|.+.+. .+..+ +++++.||||+|||++|++|++.... .+.+++|.+||++|
T Consensus 232 ~~~~~~~~~~-~~~~-~r~~Q~~~~~~i~~~~~~~--~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~L 304 (850)
T TIGR01407 232 SSLFSKNIDR-LGLE-YRPEQLKLAELVLDQLTHS--EKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVL 304 (850)
T ss_pred cHHHHHhhhh-cCCc-cCHHHHHHHHHHHHHhccC--CcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHH
Confidence 3456666654 7887 8899998665 44445 89999999999999999999988765 34589999999999
Q ss_pred HHHHHH-HHHHhhcccC--ceeeEeecCCCC------------------------------------Ccccc--------
Q 010762 184 AIQNLE-VLRKMGKHTG--ITSECAVPTDST------------------------------------NYVPI-------- 216 (502)
Q Consensus 184 a~q~~~-~~~~~~~~~~--~~~~~~~~~~~~------------------------------------~~~~~-------- 216 (502)
..|+.. .+..+...++ +++..+.|.... .....
T Consensus 305 q~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~ 384 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKM 384 (850)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchh
Confidence 999865 4555544333 322222211100 00000
Q ss_pred -c------------------------CCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhccc----C--C
Q 010762 217 -S------------------------KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA----G--F 265 (502)
Q Consensus 217 -~------------------------~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~----~--~ 265 (502)
+ +.....++|+|+.+..|...+......+....++||||||.+.+.. + +
T Consensus 385 ~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~l 464 (850)
T TIGR01407 385 FFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEEL 464 (850)
T ss_pred hHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhccee
Confidence 0 0011246899999998887775443335667899999999865310 0 0
Q ss_pred -----HHH----------------------------------------------------------------HHHHHHHh
Q 010762 266 -----RDD----------------------------------------------------------------SLRIMKDI 276 (502)
Q Consensus 266 -----~~~----------------------------------------------------------------~~~i~~~l 276 (502)
... +...+..+
T Consensus 465 s~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~ 544 (850)
T TIGR01407 465 DYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLAL 544 (850)
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 000 00000000
Q ss_pred h-------------------hc--------------------------CCCeeEEEEeecCChh-HHHHHHHHhcCCcee
Q 010762 277 E-------------------RS--------------------------SGHCQVLLFSATFNET-VKNFVTRIVKDYNQL 310 (502)
Q Consensus 277 ~-------------------~~--------------------------~~~~q~v~~SAT~~~~-~~~~~~~~~~~~~~~ 310 (502)
. .. .....+|++|||++.. -..++...++-....
T Consensus 545 ~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~ 624 (850)
T TIGR01407 545 KDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVH 624 (850)
T ss_pred HHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccc
Confidence 0 00 0013678999999732 123344333322111
Q ss_pred eecccccccccceEEEEecC---------ChHHHHHHHHHHHHHhcc-cCCcEEEEcCChhhHHHHHHHHHh----CCCc
Q 010762 311 FVKKEELSLESVKQYKVYCP---------DELAKVMVIRDRIFELGE-KMGQTIIFVRTKNSASALHKALKD----FGYE 376 (502)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~---------~~~~k~~~l~~~l~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~----~~~~ 376 (502)
.......+.....+..++++ ....-...+...+..... ..+++|||++|....+.++..|.. .++.
T Consensus 625 ~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~ 704 (850)
T TIGR01407 625 FNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE 704 (850)
T ss_pred cceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce
Confidence 11000111111111111111 112222233333433322 457899999999999999999975 2333
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCC--EEEEecCCCCCCCC--------------------
Q 010762 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN--LIVNYDPPVKHGKH-------------------- 434 (502)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~--~VI~~~~p~~~~~~-------------------- 434 (502)
+.. .+.. ..|..++++|+.++..||++|+.+++|+|+|+.. +||...+|+.....
T Consensus 705 ~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~ 781 (850)
T TIGR01407 705 VLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYD 781 (850)
T ss_pred EEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHH
Confidence 333 3333 5788999999999999999999999999999755 58888888754331
Q ss_pred --CCCCccchhhhhcccccCCCcceEEEEeeCCc-cHHHHHHHHHHhCCccccccCCHHHHHHHHH
Q 010762 435 --LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD-DMIIMEKIERYFDIKVTEVRNSDEDFKAALK 497 (502)
Q Consensus 435 --~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 497 (502)
+|..+..+.|.+||+-|...+..+++++...- ...|-+.+.+.+............++...++
T Consensus 782 ~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~~~~~~~~~~~~~~~~~~ 847 (850)
T TIGR01407 782 YVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPEYLQVKGDILGELLEAIK 847 (850)
T ss_pred hhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCCccccccCCHHHHHHHHH
Confidence 12233456899999999976655555554221 2344455555554322222234555555443
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=2.9e-22 Score=205.56 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcccc
Q 010762 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412 (502)
Q Consensus 333 ~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~ 412 (502)
..++..+...+......+.++||||+++..++.++..|...|+.+..+||++++.+|.+++..|+.|.+.|||||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 44555666667777778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEec-----CCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 413 GFDQQQVNLIVNYD-----PPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 413 Gldi~~v~~VI~~~-----~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
|+|+|++++||++| .| .+...|+||+||+||. ..|.+++|+...
T Consensus 505 GfDiP~v~lVvi~DadifG~p--------~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFL--------RSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred CeeeCCCcEEEEeCcccccCC--------CCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 99999999999988 56 7889999999999998 689999888743
No 113
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.91 E-value=3.8e-23 Score=202.33 Aligned_cols=318 Identities=20% Similarity=0.193 Sum_probs=218.9
Q ss_pred CCcHHHHhhhhhhcC--CCCccEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhhcccC
Q 010762 123 KPSKIQAISLPMILT--PPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~--~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (502)
.++++|.+.+.++.. .++-++|+..++|.|||+. .++.+.++.. ....+..||+||...| ..|...+++|...
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~-- 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPS-- 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCC--
Confidence 578999988887743 2347899999999999998 4556655543 3334568999998877 6788899999876
Q ss_pred ceeeEeecCCCCCccc-ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 200 ITSECAVPTDSTNYVP-ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
+.+.+.+|+....... .........+|+|||++..+.- ...+.--..+++|+||||++.+.. ..+..+++.+..
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~---s~L~~~lr~f~~ 317 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK---SKLSKILREFKT 317 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh---hHHHHHHHHhcc
Confidence 4455666554322211 1222334689999999987653 223334467899999999998742 224455555533
Q ss_pred cCCCeeEEEEeecCCh----------------------------------------------------------------
Q 010762 279 SSGHCQVLLFSATFNE---------------------------------------------------------------- 294 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~---------------------------------------------------------------- 294 (502)
...+++|+|+-.
T Consensus 318 ----~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 318 ----DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred ----cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 235888888310
Q ss_pred -------------hHHHHHHHH-----------------------------hcCCceeeecccccccccceEEEEecCCh
Q 010762 295 -------------TVKNFVTRI-----------------------------VKDYNQLFVKKEELSLESVKQYKVYCPDE 332 (502)
Q Consensus 295 -------------~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (502)
....+...+ ++.|..+.. .+...+.... -.+-..
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-~ePg~pyttd---ehLv~n 469 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-AEPGPPYTTD---EHLVTN 469 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC-CCCCCCCCcc---hHHHhc
Confidence 000000000 000100000 0000000000 001123
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC---CeEEEEcCc
Q 010762 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL---TQVLISTDV 409 (502)
Q Consensus 333 ~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~---~~iLv~T~~ 409 (502)
..|+..|-.+|..+...+.+||||.+.......|..++.-.++..+-+.|.++-++|...++.|.... .-+|++|.+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 46777787878888889999999999999999999999999999999999999999999999998654 346899999
Q ss_pred cccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc--eEEEEeeCC
Q 010762 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDG 465 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g--~~~~~~~~~ 465 (502)
.+-|||+..+++||.||..|+ +..-+|..-|+.|.|+.. .++.|+++.
T Consensus 550 GGLGINL~aADtVIlyDSDWN--------PQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWN--------PQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccccccEEEEecCCCC--------chhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999975 555889999999999754 566677643
No 114
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=4.6e-22 Score=185.39 Aligned_cols=363 Identities=17% Similarity=0.202 Sum_probs=234.5
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
.+.|...+.++.-.+-+++ .-.-|-=-|+.-+-.++.. ++.+++.|+||||||...--..+....... ..+....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~--R~~LPvw~~k~~F~~~l~~-nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQ 98 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKK--RRELPVWEQKEEFLKLLLN-NQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQ 98 (699)
T ss_pred cCCCCCCcCcHHHHHHHHH--HhcCchHHhHHHHHHHHhc-CceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecC
Confidence 6678888888888777764 2233444455555555544 289999999999999864333333332222 4567777
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
|+|..|.+++.....-+ ++....-+|.. ..........+-+-+||.++|++...+... +..+++||+||||.
T Consensus 99 prrvaamsva~RVadEM---Dv~lG~EVGys----IrfEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahE 170 (699)
T KOG0925|consen 99 PRRVAAMSVAQRVADEM---DVTLGEEVGYS----IRFEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHE 170 (699)
T ss_pred chHHHHHHHHHHHHHHh---ccccchhcccc----ccccccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhh
Confidence 99999999887655432 22221111111 112223333344667888888887766554 88999999999997
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
-.-. .+.+..+++.....++..++|++|||+.. ..+..++.+...+.+.. ...+..+|..-+... .+..
T Consensus 171 RtlA---TDiLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erD-ylEa 239 (699)
T KOG0925|consen 171 RTLA---TDILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG----THPVEIFYTPEPERD-YLEA 239 (699)
T ss_pred hhHH---HHHHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeecCC----CCceEEEecCCCChh-HHHH
Confidence 5532 46677788888777889999999999753 23556666666555543 122233333332222 2222
Q ss_pred HHHHHHH--hcccCCcEEEEcCChhhHHHHHHHHHhC---------CCcEEEecCCCCHHHHHHHHHHHH---cC--CCe
Q 010762 339 IRDRIFE--LGEKMGQTIIFVRTKNSASALHKALKDF---------GYEVTTIMGATIQEERDKIVKEFK---DG--LTQ 402 (502)
Q Consensus 339 l~~~l~~--~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~~~~~~~~r~~~~~~f~---~~--~~~ 402 (502)
.+..+.+ ..+..+.+|||..+.++++..++.+... .+.|.++| +.++..+++.-. +| ..+
T Consensus 240 airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rk 315 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRK 315 (699)
T ss_pred HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccce
Confidence 2222222 2446889999999999999888887632 35788888 333333333322 12 357
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCCCCC----------CCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHH
Q 010762 403 VLISTDVLARGFDQQQVNLIVNYDPPVKHGK----------HLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472 (502)
Q Consensus 403 iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~----------~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 472 (502)
|+|+|++++..+.++++.+||+-++...... ..|-|-.+..||.||+||. ++|+|+.+|+.
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte-------- 386 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE-------- 386 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH--------
Confidence 9999999999999999999998555432221 1245677789999999998 79999999983
Q ss_pred HHHHHhCCccccc-----c-CCHHHHHHHHHHcCC
Q 010762 473 KIERYFDIKVTEV-----R-NSDEDFKAALKAAGL 501 (502)
Q Consensus 473 ~i~~~l~~~~~~~-----~-~~~~~~~~~~~~~~~ 501 (502)
++++.+..+. . .++..+...||..||
T Consensus 387 ---~~~~~em~~~typeilrsNL~s~VL~LKklgI 418 (699)
T KOG0925|consen 387 ---EAFEKEMQPQTYPEILRSNLSSTVLQLKKLGI 418 (699)
T ss_pred ---HhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCc
Confidence 2333333222 2 677788888888876
No 115
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=7.7e-23 Score=209.66 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=112.7
Q ss_pred ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 331 ~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
....|...+...+......+.++||||+|++.++.++..|...++++..||+ .+.+|+..+..|+.+...|+|||+++
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 3456888888877776668899999999999999999999999999999997 57899999999999999999999999
Q ss_pred ccCCCCC---CCCE-----EEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 411 ARGFDQQ---QVNL-----IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 411 ~~Gldi~---~v~~-----VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
+||+||+ .|.. ||+++.| .|...|.||+||+||.|.+|.++.|++..++
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterh--------es~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERH--------ESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCC--------chHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999 4543 4777777 7889999999999999999999999986654
No 116
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.3e-21 Score=192.56 Aligned_cols=323 Identities=17% Similarity=0.197 Sum_probs=213.4
Q ss_pred CCcHHHHhhhhhhcC--CCCccEEEECcCCCcchhHhHHHHHhccCCC-CCCCeEEEecCcHHHHHHHHHHHHHhhcccC
Q 010762 123 KPSKIQAISLPMILT--PPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-LKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~--~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~-~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (502)
.+.|+|+..+.++.+ -+...-|+...+|.|||... +..|..+... .--..+|||||. .+..||..+|+.|+....
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 356899999988753 12256788999999999873 3344444332 233579999997 588999999999987754
Q ss_pred ceeeEeecCCCCCcc-----------cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHH
Q 010762 200 ITSECAVPTDSTNYV-----------PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268 (502)
Q Consensus 200 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~ 268 (502)
+ ..+++..+.... .+.........|+|+|+..|.- ....+.-...+++|+||.|++-+.. ..
T Consensus 283 v--~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpn---s~ 355 (923)
T KOG0387|consen 283 V--FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPN---SK 355 (923)
T ss_pred E--EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCc---cH
Confidence 4 344444332110 1112223345799999987643 2233444567899999999998742 22
Q ss_pred HHHHHHHhhhcCCCeeEEEEeecCChh-HHHHH-----------------------------------------------
Q 010762 269 SLRIMKDIERSSGHCQVLLFSATFNET-VKNFV----------------------------------------------- 300 (502)
Q Consensus 269 ~~~i~~~l~~~~~~~q~v~~SAT~~~~-~~~~~----------------------------------------------- 300 (502)
+...++.++ ..+.+++|+|+-.+ +.++.
T Consensus 356 islackki~----T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 356 ISLACKKIR----TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred HHHHHHhcc----ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 333344443 34678999993111 10000
Q ss_pred -----HHHhc--------------CCceeeecc------------------------ccccccc---------ceEEEE-
Q 010762 301 -----TRIVK--------------DYNQLFVKK------------------------EELSLES---------VKQYKV- 327 (502)
Q Consensus 301 -----~~~~~--------------~~~~~~~~~------------------------~~~~~~~---------~~~~~~- 327 (502)
..++. ....+.... ....+.+ ....+.
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 00000 000000000 0000000 000000
Q ss_pred ------------ecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHH-hCCCcEEEecCCCCHHHHHHHHH
Q 010762 328 ------------YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALK-DFGYEVTTIMGATIQEERDKIVK 394 (502)
Q Consensus 328 ------------~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~l~~~~~~~~r~~~~~ 394 (502)
-.+....|+..+..++......+.++|+|.+++.....+...|. ..++.++.+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 11123467777777777777788899999999999999999998 68999999999999999999999
Q ss_pred HHHcCCC--eEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc--eEEEEeeCCc
Q 010762 395 EFKDGLT--QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGD 466 (502)
Q Consensus 395 ~f~~~~~--~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g--~~~~~~~~~~ 466 (502)
+|+++.. -+|++|.+.+-|+|+.+++.||.||+-|+ +++-.|..-|+.|.|++. .+|.|++.+.
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWN--------PStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWN--------PSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCC--------CccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 9997764 36899999999999999999999999975 566889999999999754 4566776543
No 117
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=1.8e-21 Score=201.41 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccC
Q 010762 334 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 413 (502)
Q Consensus 334 ~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 413 (502)
.+...+...+......+.++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+.|...|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 34556666676666678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC--------ccHHHHHHHHHHhCCccccc
Q 010762 414 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG--------DDMIIMEKIERYFDIKVTEV 485 (502)
Q Consensus 414 ldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~--------~~~~~~~~i~~~l~~~~~~~ 485 (502)
+|+|++++||++|.+..+ .+.+...|+||+||+||. ..|.+++|+... ++....+.++..++.+...+
T Consensus 510 fdlp~v~lVii~d~eifG---~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 585 (652)
T PRK05298 510 LDIPEVSLVAILDADKEG---FLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGIT 585 (652)
T ss_pred ccccCCcEEEEeCCcccc---cCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999864322 116889999999999996 789999998742 45667778888888888777
Q ss_pred c
Q 010762 486 R 486 (502)
Q Consensus 486 ~ 486 (502)
|
T Consensus 586 ~ 586 (652)
T PRK05298 586 P 586 (652)
T ss_pred C
Confidence 7
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.88 E-value=3.1e-21 Score=200.53 Aligned_cols=302 Identities=17% Similarity=0.214 Sum_probs=176.1
Q ss_pred CcHHHHhhhhhhcCC--------CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 124 PSKIQAISLPMILTP--------PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 124 p~~~Q~~~i~~il~~--------~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
|.+.|..|+..++.. ..+..+++++||||||++.+..+...+ .....+++|||+|+.+|..|+.+.|..++
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 778899888776321 136799999999999998655443333 34456799999999999999999999876
Q ss_pred cccCceeeEeecCCCCCcccc-cCCCCCCCeEEEeCchHHHHHHHcC--ccCCCc-eEEEEEeCchhhhcccCCHHHHHH
Q 010762 196 KHTGITSECAVPTDSTNYVPI-SKRPPVTAQVVIGTPGTIKKWMSAK--KLGFSR-LKILVYDEADHMLDEAGFRDDSLR 271 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~~~~~-~~~lVlDEah~l~~~~~~~~~~~~ 271 (502)
.... ....+.. .+ .........|+|+|.+.|...+... ...... --+||+||||+... . .+..
T Consensus 318 ~~~~------~~~~s~~--~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~-~~~~ 384 (667)
T TIGR00348 318 KDCA------ERIESIA--ELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----G-ELAK 384 (667)
T ss_pred CCCC------cccCCHH--HHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----h-HHHH
Confidence 4210 0001100 00 0011123679999999998644321 111111 12899999998543 1 1223
Q ss_pred HHHHhhhcCCCeeEEEEeecCChhHHHHHHHHh----cCCceeeecccccccccc-eEE-EE------ecC---------
Q 010762 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIV----KDYNQLFVKKEELSLESV-KQY-KV------YCP--------- 330 (502)
Q Consensus 272 i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~-~~------~~~--------- 330 (502)
.+. ...++...++||||+-..........+ ..+...+.. .+....+. ... |. ...
T Consensus 385 ~l~---~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~-~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 385 NLK---KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFI-TDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHH---hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeH-HHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 332 222356799999997432100000111 111111100 00000000 000 00 000
Q ss_pred -------C---hH-------------------HHHHH----HHHHHHHhcc-cCCcEEEEcCChhhHHHHHHHHHhC---
Q 010762 331 -------D---EL-------------------AKVMV----IRDRIFELGE-KMGQTIIFVRTKNSASALHKALKDF--- 373 (502)
Q Consensus 331 -------~---~~-------------------~k~~~----l~~~l~~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~--- 373 (502)
. .. ..... +...+..... ..++++|||.++..|..+++.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 0 00 00011 1111111111 2589999999999999999988664
Q ss_pred --CCcEEEecCCCCHH---------------------HHHHHHHHHHc-CCCeEEEEcCccccCCCCCCCCEEEEecCCC
Q 010762 374 --GYEVTTIMGATIQE---------------------ERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNYDPPV 429 (502)
Q Consensus 374 --~~~~~~l~~~~~~~---------------------~r~~~~~~f~~-~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~ 429 (502)
+.....+++..+.. ....++++|+. +..+|||+++.+.+|+|.|.+++++ +|-|.
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy-ldKpl 619 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY-LDKPL 619 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE-Eeccc
Confidence 24456666654332 22478889976 6789999999999999999999999 45563
Q ss_pred CCCCCCCCCccchhhhhcccccC
Q 010762 430 KHGKHLEPDCEVYLHRIGRAGRF 452 (502)
Q Consensus 430 ~~~~~~~~s~~~y~qr~GR~~R~ 452 (502)
.+ ..++|.+||+.|.
T Consensus 620 -------k~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 620 -------KY-HGLLQAIARTNRI 634 (667)
T ss_pred -------cc-cHHHHHHHHhccc
Confidence 23 3489999999993
No 119
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.88 E-value=2.3e-20 Score=197.16 Aligned_cols=365 Identities=18% Similarity=0.186 Sum_probs=214.9
Q ss_pred CCCCCcHHHHhhhhhh---cCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHH-HHHHHhh
Q 010762 120 KFQKPSKIQAISLPMI---LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL-EVLRKMG 195 (502)
Q Consensus 120 g~~~p~~~Q~~~i~~i---l~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~-~~~~~~~ 195 (502)
|| .+++-|.+....+ +.+ +..+++.|+||+|||++|++|++... .+.+++|++||++|++|+. +.+..+.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~-~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHD-GPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhC-CCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 55 4889999844443 333 38899999999999999999998764 3568999999999999994 6677766
Q ss_pred cccCceeeEeecCCCC--------------------------------------Ccc-------cccC-----------C
Q 010762 196 KHTGITSECAVPTDST--------------------------------------NYV-------PISK-----------R 219 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~~--------------------------------------~~~-------~~~~-----------~ 219 (502)
...++.+..+.|+... ... ..+. .
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 6666554433322100 000 0000 0
Q ss_pred -------------CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhccc----CCH-------HH-------
Q 010762 220 -------------PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA----GFR-------DD------- 268 (502)
Q Consensus 220 -------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~----~~~-------~~------- 268 (502)
....+||+|+....|...+.... .+...+++||||||++.+.. +.. ..
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 01135899999998887765543 36789999999999875410 000 00
Q ss_pred ------------------------------------HHH---HHHHhh--------------h-------c---------
Q 010762 269 ------------------------------------SLR---IMKDIE--------------R-------S--------- 279 (502)
Q Consensus 269 ------------------------------------~~~---i~~~l~--------------~-------~--------- 279 (502)
+.. .+..+. . .
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 000 000000 0 0
Q ss_pred ---------------CCCeeEEEEeecCC--hhHHHHHHHHhcCCceeeecccccccccceEEEEe--cC-----ChHHH
Q 010762 280 ---------------SGHCQVLLFSATFN--ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY--CP-----DELAK 335 (502)
Q Consensus 280 ---------------~~~~q~v~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~k 335 (502)
.....+|++|||++ +.. .+ ...++-......... .....-...++. .+ ....-
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~~-~~~~~~~~~~i~~~~p~~~~~~~~~~ 632 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKIE-KDKKQDQLVVVDQDMPLVTETSDEVY 632 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecCC-CChHHccEEEeCCCCCCCCCCChHHH
Confidence 00136789999996 322 23 332321111111000 111110111111 11 11222
Q ss_pred HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCC
Q 010762 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 415 (502)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gld 415 (502)
...+...+......++++||+++|.+..+.++..|......+..-..++ .+..++++|+.+...||++|+.+.+|+|
T Consensus 633 ~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~l~Qg~~~---~~~~l~~~F~~~~~~vLlG~~sFwEGVD 709 (820)
T PRK07246 633 AEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSHLAQEKNG---TAYNIKKRFDRGEQQILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcEEEeCCCc---cHHHHHHHHHcCCCeEEEecchhhCCCC
Confidence 2334444444444678999999999999999999976655553332233 2566899999988899999999999999
Q ss_pred CC--CCCEEEEecCCCCCCCC----------------------CCCCccchhhhhcccccCCCcceEEEEeeCC-ccHHH
Q 010762 416 QQ--QVNLIVNYDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG-DDMII 470 (502)
Q Consensus 416 i~--~v~~VI~~~~p~~~~~~----------------------~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~-~~~~~ 470 (502)
+| +...||...+|....+. +|.-+..+.|.+||.-|...+..+++++... ....|
T Consensus 710 ~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Y 789 (820)
T PRK07246 710 FVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSY 789 (820)
T ss_pred CCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHH
Confidence 97 35667888888764432 1223344689999999987544445455422 12345
Q ss_pred HHHHHHHhCCccccccCCHHHHHHHHH
Q 010762 471 MEKIERYFDIKVTEVRNSDEDFKAALK 497 (502)
Q Consensus 471 ~~~i~~~l~~~~~~~~~~~~~~~~~~~ 497 (502)
-+.+.+.+...+.-...+..++...++
T Consensus 790 g~~~l~sLP~~~~~~~~~~~~~~~~~~ 816 (820)
T PRK07246 790 GKQILASLAEEFLISQQNFSDVLVEID 816 (820)
T ss_pred HHHHHHhCCCCCccccCCHHHHHHHHH
Confidence 566666665432222235566555443
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.8e-20 Score=176.02 Aligned_cols=170 Identities=20% Similarity=0.189 Sum_probs=133.2
Q ss_pred CeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChh
Q 010762 282 HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKN 361 (502)
Q Consensus 282 ~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~ 361 (502)
..|+|++|||+.+.-..... +....-.+ .+.++..-.+.+......+..+...+......+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiI-----RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQII-----RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEee-----cCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 35999999997654322211 11111111 11222222233334445666777777777778899999999999
Q ss_pred hHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccc
Q 010762 362 SASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEV 441 (502)
Q Consensus 362 ~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~ 441 (502)
.|+.|..+|.+.|+++..+|++...-+|.+++...+.|.+.|||.-+.+-.|||+|.|..|..+|....+.. +|-.+
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFL---Rse~S 534 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFL---RSERS 534 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccc---cccch
Confidence 999999999999999999999999999999999999999999999999999999999999999998766655 78899
Q ss_pred hhhhhcccccCCCcceEEEEee
Q 010762 442 YLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 442 y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
.+|-+|||+|. -.|.++.+..
T Consensus 535 LIQtIGRAARN-~~GkvIlYAD 555 (663)
T COG0556 535 LIQTIGRAARN-VNGKVILYAD 555 (663)
T ss_pred HHHHHHHHhhc-cCCeEEEEch
Confidence 99999999996 5899996653
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=5.9e-21 Score=193.98 Aligned_cols=330 Identities=21% Similarity=0.272 Sum_probs=212.8
Q ss_pred CCcHHHHhhhhhhcCC--CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCc
Q 010762 123 KPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (502)
.+++-|..++..+... .....++.+.||||||-+|+-.+-..+. .|..+|||+|-..|..|+...|+..++ ..+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA---QGKQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH---cCCEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 4678888888888654 2478999999999999999887777664 456899999999999999999988765 233
Q ss_pred eeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhc--ccCCHHHHHHHHHHhhh
Q 010762 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--EAGFRDDSLRIMKDIER 278 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~--~~~~~~~~~~i~~~l~~ 278 (502)
.+.+...+.+.....+.+...+...|+|+|=..+ ...+.++++||+||=|.-.- ..+.+-....+ ..++.
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdv-A~~Ra 345 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDV-AVLRA 345 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHH-HHHHH
Confidence 2222222333334445555667889999995333 23588999999999996331 11111112211 11222
Q ss_pred cCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHH-----HHHHHHHHHhcccCCcE
Q 010762 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKV-----MVIRDRIFELGEKMGQT 353 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~~ 353 (502)
...++++|+-|||++ ++.+.......+..+...........-...++.+..+..+. ..+.+.+.+..+.+.++
T Consensus 346 ~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~ 423 (730)
T COG1198 346 KKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQV 423 (730)
T ss_pred HHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeE
Confidence 223678999999965 44444433333444444433332222222233333222222 45566677777788999
Q ss_pred EEEcCChhhHHHHH------------------------------------------------------------HHHHhC
Q 010762 354 IIFVRTKNSASALH------------------------------------------------------------KALKDF 373 (502)
Q Consensus 354 lVF~~s~~~~~~l~------------------------------------------------------------~~L~~~ 373 (502)
|+|.|.+-.+-.+. +.|...
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~ 503 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL 503 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH
Confidence 99999776553331 111111
Q ss_pred --CCcEEEecCCCCH--HHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCC--CCCCCC--CCCccchhhh
Q 010762 374 --GYEVTTIMGATIQ--EERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV--KHGKHL--EPDCEVYLHR 445 (502)
Q Consensus 374 --~~~~~~l~~~~~~--~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~--~~~~~~--~~s~~~y~qr 445 (502)
+..+..+.++.+. ..-+..+..|.+|+.+|||.|++++-|.|+|+++.|...|.-. ...+.+ .+....+.|-
T Consensus 504 FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qv 583 (730)
T COG1198 504 FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQV 583 (730)
T ss_pred CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHH
Confidence 3445666666543 3456789999999999999999999999999999976654432 222221 1234456899
Q ss_pred hcccccCCCcceEEEEeeCCc
Q 010762 446 IGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 446 ~GR~~R~g~~g~~~~~~~~~~ 466 (502)
.||+||.+.+|.+++-....+
T Consensus 584 aGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 584 AGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HhhhccCCCCCeEEEEeCCCC
Confidence 999999999999986665554
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=4.5e-21 Score=191.09 Aligned_cols=296 Identities=17% Similarity=0.238 Sum_probs=193.8
Q ss_pred CCCCcHHHHhhhhhhc----CCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 121 FQKPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 121 ~~~p~~~Q~~~i~~il----~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
-..|+.+|..||..+. .|+ +.+++++.||+|||.+ .+.++.+|.......++|+|+.+++|+.|.+..+..+..
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~-~raLlvMATGTGKTrT-Aiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQ-NRALLVMATGTGKTRT-AIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCC-ceEEEEEecCCCccee-HHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC
Confidence 3458899999997664 454 5699999999999998 566777777767778999999999999999998888765
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-----ccCCCceEEEEEeCchhhhcccCCHHHHHH
Q 010762 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-----KLGFSRLKILVYDEADHMLDEAGFRDDSLR 271 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-----~~~~~~~~~lVlDEah~l~~~~~~~~~~~~ 271 (502)
.... ...+.+ +.....+.|.|+|.+.+...+... .+....+++||+||||+= .-.....
T Consensus 241 ~~~~-~n~i~~----------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg-----i~~~~~~ 304 (875)
T COG4096 241 FGTK-MNKIED----------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG-----IYSEWSS 304 (875)
T ss_pred Cccc-eeeeec----------ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh-----HHhhhHH
Confidence 4221 111111 111125799999999998877654 234556999999999973 3333456
Q ss_pred HHHHhhhcCCCeeEEEEeecCChhHHHHHHHHh-cCCceeee------------------cc----cccccccc------
Q 010762 272 IMKDIERSSGHCQVLLFSATFNETVKNFVTRIV-KDYNQLFV------------------KK----EELSLESV------ 322 (502)
Q Consensus 272 i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~-~~~~~~~~------------------~~----~~~~~~~~------ 322 (502)
|+..+.. -++++|||+...+...-..++ ..|...+. .. ....+...
T Consensus 305 I~dYFdA-----~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~ 379 (875)
T COG4096 305 ILDYFDA-----ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKL 379 (875)
T ss_pred HHHHHHH-----HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhh
Confidence 7777754 245559998764433333333 22221111 00 00000000
Q ss_pred -------eEE---------EEecCChHHHHHHHHHHHHHhccc------CCcEEEEcCChhhHHHHHHHHHhC-----CC
Q 010762 323 -------KQY---------KVYCPDELAKVMVIRDRIFELGEK------MGQTIIFVRTKNSASALHKALKDF-----GY 375 (502)
Q Consensus 323 -------~~~---------~~~~~~~~~k~~~l~~~l~~~~~~------~~~~lVF~~s~~~~~~l~~~L~~~-----~~ 375 (502)
... ...++. ....+...+...+.. .++|||||.+..+|+.+...|... +-
T Consensus 380 ~g~~i~~dd~~~~~~d~dr~~v~~~---~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~ 456 (875)
T COG4096 380 QGEAIDEDDQNFEARDFDRTLVIPF---RTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGR 456 (875)
T ss_pred hccccCcccccccccccchhccccc---hHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCc
Confidence 000 000001 111112222222222 579999999999999999999765 34
Q ss_pred cEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccC
Q 010762 376 EVTTIMGATIQEERDKIVKEFKD--GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF 452 (502)
Q Consensus 376 ~~~~l~~~~~~~~r~~~~~~f~~--~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~ 452 (502)
-+..+.|+-.+.+ ..+..|.. .-..|.|+.+++.+|+|+|.|-.++.+..- .|..-|-|++||+-|.
T Consensus 457 ~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~V--------rSktkF~QMvGRGTRl 525 (875)
T COG4096 457 YAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKV--------RSKTKFKQMVGRGTRL 525 (875)
T ss_pred eEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhh--------hhHHHHHHHhcCcccc
Confidence 5778888764433 34555654 335689999999999999999999877665 7889999999999995
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=6.6e-20 Score=183.20 Aligned_cols=326 Identities=16% Similarity=0.152 Sum_probs=218.4
Q ss_pred HhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 116 ~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
...+|.. |+++|..+.-.++.| -++...||+|||++..+|++... ..+..+.|++|+.-||.|-++++..+.
T Consensus 72 ~R~lg~r-~ydvQlig~l~Ll~G----~VaEM~TGEGKTLvA~l~a~l~A---L~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 72 ERTLGLR-PFDVQLLGALRLLAG----DVIEMATGEGKTLAGAIAAAGYA---LQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHcCCC-cchHHHHHHHHHhCC----CcccccCCCCHHHHHHHHHHHHH---HcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 3345665 999999999988887 47799999999999998887654 356679999999999999999999999
Q ss_pred cccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcC------ccCCCceEEEEEeCchhhhcccC----
Q 010762 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDEAG---- 264 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~lVlDEah~l~~~~~---- 264 (502)
..+|+++.+..+..... .+.....|||+++|...| .++|+.+ ......+.+.|+||+|.++-+..
T Consensus 144 ~~LGLsvg~i~~~~~~~----err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPL 219 (764)
T PRK12326 144 EALGLTVGWITEESTPE----ERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPL 219 (764)
T ss_pred HhcCCEEEEECCCCCHH----HHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCce
Confidence 99999998876654322 122233589999998775 2333221 22346688999999997542100
Q ss_pred ----------CHHHHHHHHHHhhhcC------------------------------------------------------
Q 010762 265 ----------FRDDSLRIMKDIERSS------------------------------------------------------ 280 (502)
Q Consensus 265 ----------~~~~~~~i~~~l~~~~------------------------------------------------------ 280 (502)
.-..+..+...+....
T Consensus 220 iISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~ 299 (764)
T PRK12326 220 VLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQ 299 (764)
T ss_pred eeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHh
Confidence 0001111111111000
Q ss_pred C-------------------------------------------------------------CeeEEEEeecCChhHHHH
Q 010762 281 G-------------------------------------------------------------HCQVLLFSATFNETVKNF 299 (502)
Q Consensus 281 ~-------------------------------------------------------------~~q~v~~SAT~~~~~~~~ 299 (502)
. -.++.+||+|......++
T Consensus 300 ~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef 379 (764)
T PRK12326 300 RDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL 379 (764)
T ss_pred cCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH
Confidence 0 003345555554333332
Q ss_pred HHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEE
Q 010762 300 VTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTT 379 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~ 379 (502)
....+.. .+.++. ..+................|...+.+.+......+.|+||.|.|++..+.++..|.+.|+++..
T Consensus 380 -~~iY~l~-Vv~IPt-nkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~v 456 (764)
T PRK12326 380 -RQFYDLG-VSVIPP-NKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVV 456 (764)
T ss_pred -HHHhCCc-EEECCC-CCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCccee
Confidence 2222222 111111 1111111111223334667888888878887789999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHcCC-CeEEEEcCccccCCCCCC---------------CCEEEEecCCCCCCCCCCCCccchh
Q 010762 380 IMGATIQEERDKIVKEFKDGL-TQVLISTDVLARGFDQQQ---------------VNLIVNYDPPVKHGKHLEPDCEVYL 443 (502)
Q Consensus 380 l~~~~~~~~r~~~~~~f~~~~-~~iLv~T~~~~~Gldi~~---------------v~~VI~~~~p~~~~~~~~~s~~~y~ 443 (502)
|++.....+-..+-+ .|. -.|.|||++++||-||.- ==|||--..+ .|...-.
T Consensus 457 LNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerh--------eSrRID~ 525 (764)
T PRK12326 457 LNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRH--------RSERLDN 525 (764)
T ss_pred eccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCC--------chHHHHH
Confidence 998755433222222 343 368999999999999872 2357766666 7788889
Q ss_pred hhhcccccCCCcceEEEEeeCCcc
Q 010762 444 HRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 444 qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
|-.||+||-|.+|.+..|++-+|+
T Consensus 526 QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 526 QLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred HHhcccccCCCCCceeEEEEcchh
Confidence 999999999999999988886554
No 124
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=1.6e-20 Score=188.25 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=109.2
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccC-ce
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG-IT 201 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~-~~ 201 (502)
.|..||...+..+-++ ..++|.|||.+|||.+.-..+ +.+.......-+|++.|+++|+.|+...+........ ..
T Consensus 511 ~Pd~WQ~elLDsvDr~--eSavIVAPTSaGKTfisfY~i-EKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRN--ESAVIVAPTSAGKTFISFYAI-EKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CCcHHHHHHhhhhhcc--cceEEEeeccCCceeccHHHH-HHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 4889999999999888 999999999999999854444 3333444566899999999999999987765542222 11
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC---ccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK---KLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~---~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
.....+.-... .....-.|+|+|+-|+.+-.++... .....+++++|+||+|.+... .-...+..++..+
T Consensus 588 g~sl~g~ltqE----Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~-ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 588 GVSLLGDLTQE----YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNE-EDGLLWEQLLLLI-- 660 (1330)
T ss_pred chhhHhhhhHH----hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccc-ccchHHHHHHHhc--
Confidence 11222222111 1122336999999999999888773 345788999999999998762 1122233333333
Q ss_pred cCCCeeEEEEeecCC
Q 010762 279 SSGHCQVLLFSATFN 293 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~ 293 (502)
.|.++++|||+.
T Consensus 661 ---~CP~L~LSATig 672 (1330)
T KOG0949|consen 661 ---PCPFLVLSATIG 672 (1330)
T ss_pred ---CCCeeEEecccC
Confidence 567999999953
No 125
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.84 E-value=3.7e-21 Score=197.36 Aligned_cols=323 Identities=16% Similarity=0.152 Sum_probs=208.3
Q ss_pred CCCcHHHHhhhhhhcCC--CCccEEEECcCCCcchhHhHHHHHhccCCCC-CCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 122 QKPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNL-KAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~-~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
..++.+|...+.+++.. +++++|++.++|.|||+.- +..|..+.... -.+..|||+|...+ ..|.+.|..|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHh---
Confidence 56889999999887542 2389999999999999872 33333332211 33457999998654 66788888877
Q ss_pred CceeeEeecCCCCCcc--cc----cC-CCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHH
Q 010762 199 GITSECAVPTDSTNYV--PI----SK-RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLR 271 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~--~~----~~-~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~ 271 (502)
..++.+.+|....... .. .. ...-..+++++|++.++.- ...+.--...++++||||+|.+. ...+..
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrLkN~---~~~l~~ 518 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRLKND---ESKLYE 518 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhcCch---HHHHHH
Confidence 3455555554322210 00 00 1222579999999987542 22333345678999999999863 122333
Q ss_pred HHHHhhhcCCCeeEEEEeecCC-hhHHHHHHHH-hcCCc-----------------------------------------
Q 010762 272 IMKDIERSSGHCQVLLFSATFN-ETVKNFVTRI-VKDYN----------------------------------------- 308 (502)
Q Consensus 272 i~~~l~~~~~~~q~v~~SAT~~-~~~~~~~~~~-~~~~~----------------------------------------- 308 (502)
.+..+.. -..+++|+|+- ..+.++...+ +..|.
T Consensus 519 ~l~~f~~----~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 519 SLNQFKM----NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHhcc----cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 3444432 24578888832 1111111000 00000
Q ss_pred -------------------------------eeeecccccccc--c--------ceEEEEecCC----------------
Q 010762 309 -------------------------------QLFVKKEELSLE--S--------VKQYKVYCPD---------------- 331 (502)
Q Consensus 309 -------------------------------~~~~~~~~~~~~--~--------~~~~~~~~~~---------------- 331 (502)
.+.-......+. + ..|-|..-+.
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 000000000000 0 0111111111
Q ss_pred ------hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc---CCCe
Q 010762 332 ------ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD---GLTQ 402 (502)
Q Consensus 332 ------~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~---~~~~ 402 (502)
...|+..|-.+|.++...+++||||.+.+.....|+++|...+++.--|.|.+....|..++.+|.. ....
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 1122223334555666678999999999999999999999999999999999999999999999974 4577
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc--eEEEEeeCCc
Q 010762 403 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGD 466 (502)
Q Consensus 403 iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g--~~~~~~~~~~ 466 (502)
+|+||.+.+-|||+..+++||.||.-|+ +..-+|...|+.|.|+.. .+|.|++.+.
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWN--------PQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWN--------PQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCC--------cchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 8999999999999999999999999975 555899999999999764 5788888543
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.84 E-value=3.7e-19 Score=179.79 Aligned_cols=320 Identities=18% Similarity=0.211 Sum_probs=197.8
Q ss_pred CCcHHHHhhhhhhcC---C-----CCccEEEECcCCCcchhHhHHHHHhccCCCCCC-----CeEEEecCcHHHHHHHHH
Q 010762 123 KPSKIQAISLPMILT---P-----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA-----PQALCICPTRELAIQNLE 189 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~---~-----~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~-----~~~lil~Pt~~La~q~~~ 189 (502)
.+.|+|++.+..+.. | ....+|++..+|+|||+..+..+...+.+ ... .++|||||. .|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCccccccccEEEccH-HHHHHHHH
Confidence 467999999977643 2 23568999999999999855444444433 333 579999997 69999999
Q ss_pred HHHHhhcccCceeeEeecCCCCCcc-----cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccC
Q 010762 190 VLRKMGKHTGITSECAVPTDSTNYV-----PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAG 264 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~ 264 (502)
+|.+|.....+....+.+.....+. ..........-|++.+++.+.+.+.. +....+++||+||.|++-+..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~- 392 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSD- 392 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchh-
Confidence 9999988655555555555442000 00111122346888888888765543 446778999999999987632
Q ss_pred CHHHHHHHHHHhhhcCCCeeEEEEeecCC-hh------------------------------------------------
Q 010762 265 FRDDSLRIMKDIERSSGHCQVLLFSATFN-ET------------------------------------------------ 295 (502)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~q~v~~SAT~~-~~------------------------------------------------ 295 (502)
..+++.+.... ..+.|++|+|+- .+
T Consensus 393 -----s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~r 466 (776)
T KOG0390|consen 393 -----SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREER 466 (776)
T ss_pred -----hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHH
Confidence 22333333322 235688899931 00
Q ss_pred ---HHHHHHHHhcCCceeeecccccccccceEEEEec-------------------------------------------
Q 010762 296 ---VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC------------------------------------------- 329 (502)
Q Consensus 296 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 329 (502)
+..+...++..... ......++....+++.+
T Consensus 467 l~eL~~~t~~fi~rrt~---~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~ 543 (776)
T KOG0390|consen 467 LQELRELTNKFILRRTG---DILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLL 543 (776)
T ss_pred HHHHHHHHHhheeeccc---chhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhh
Confidence 11111111110000 00000000000000000
Q ss_pred ------------------------------CChHHHHHHHHHHHHHhccc-CCcEEEEcCChhhHHHHHHHHHhCCCcEE
Q 010762 330 ------------------------------PDELAKVMVIRDRIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVT 378 (502)
Q Consensus 330 ------------------------------~~~~~k~~~l~~~l~~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~~~~~~ 378 (502)
.....++..+..++....+. ..++.+..|-....+.+...++-.|+.++
T Consensus 544 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~ 623 (776)
T KOG0390|consen 544 LLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVL 623 (776)
T ss_pred cccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEE
Confidence 01233444444433222222 22334444445555555555666699999
Q ss_pred EecCCCCHHHHHHHHHHHHcCC---CeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCc
Q 010762 379 TIMGATIQEERDKIVKEFKDGL---TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK 455 (502)
Q Consensus 379 ~l~~~~~~~~r~~~~~~f~~~~---~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~ 455 (502)
.+||.|+..+|+.+++.|++.. .-.|.+|.+.+.||++-+++.||.||+.| +++.-.|+++|+.|.|++
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW--------NPa~d~QAmaR~~RdGQK 695 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW--------NPAVDQQAMARAWRDGQK 695 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC--------CchhHHHHHHHhccCCCc
Confidence 9999999999999999998654 23577789999999999999999999997 466689999999999987
Q ss_pred ceEE--EEeeC
Q 010762 456 GVVF--NLLMD 464 (502)
Q Consensus 456 g~~~--~~~~~ 464 (502)
..|+ .|++.
T Consensus 696 k~v~iYrLlat 706 (776)
T KOG0390|consen 696 KPVYIYRLLAT 706 (776)
T ss_pred ceEEEEEeecC
Confidence 7665 45543
No 127
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=4.7e-20 Score=172.62 Aligned_cols=310 Identities=18% Similarity=0.169 Sum_probs=195.4
Q ss_pred CCCCCcHHHHhhhhhhcC-CCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 120 KFQKPSKIQAISLPMILT-PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 120 g~~~p~~~Q~~~i~~il~-~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.-..++|+|..++..+.. |..+.-+|..|+|+|||++-+-+ .+.+ ..++|+||.+-.-+.||..+|..|+...
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTA-a~ti-----kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTA-ACTI-----KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeee-eeee-----cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 345689999999988864 34678999999999999984333 3332 3479999999999999999999987665
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc--------CccCCCceEEEEEeCchhhhcccCCHHHHH
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA--------KKLGFSRLKILVYDEADHMLDEAGFRDDSL 270 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~~~~lVlDEah~l~~~~~~~~~~~ 270 (502)
+-.+..+..... .....++.|+|+|+.++..--.+ ..+.-..++++++||+|.+-..+ |+..
T Consensus 373 d~~i~rFTsd~K-------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M-FRRV-- 442 (776)
T KOG1123|consen 373 DDQICRFTSDAK-------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM-FRRV-- 442 (776)
T ss_pred ccceEEeecccc-------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH-HHHH--
Confidence 544433332221 22344688999999766321110 01123457889999999877643 4443
Q ss_pred HHHHHhhhcCCCeeEEEEeecCChhHHHHHH-HHhcCCceeeec----ccccccccceEEEEecCC--------------
Q 010762 271 RIMKDIERSSGHCQVLLFSATFNETVKNFVT-RIVKDYNQLFVK----KEELSLESVKQYKVYCPD-------------- 331 (502)
Q Consensus 271 ~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------- 331 (502)
+..+... + .+++|||+-.+-..... .++..|...... ........++..-+.|+.
T Consensus 443 --lsiv~aH---c-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~ 516 (776)
T KOG1123|consen 443 --LSIVQAH---C-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTR 516 (776)
T ss_pred --HHHHHHH---h-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhh
Confidence 3333321 1 38999997422111000 011111000000 000001111112222221
Q ss_pred --------hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc-CCCe
Q 010762 332 --------ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD-GLTQ 402 (502)
Q Consensus 332 --------~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~-~~~~ 402 (502)
+..|.....-++...-..+.++|||..+.-.....+-.|.. ..++|..+|.+|.++++.|+. ..++
T Consensus 517 kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 517 KRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred hhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccc
Confidence 12233333333333444788999999998777777766643 578999999999999999984 4678
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCC---c---ceEEEEee
Q 010762 403 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR---K---GVVFNLLM 463 (502)
Q Consensus 403 iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~---~---g~~~~~~~ 463 (502)
-++.+.+....+|+|.++++|..+.-. .|-..-.||.||.-|+.+ + ...+.+++
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~-------GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHG-------GSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccc-------cchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 889999999999999999999887653 456677899999999742 1 24455665
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=6.2e-19 Score=180.63 Aligned_cols=325 Identities=18% Similarity=0.176 Sum_probs=209.1
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
.+|. .|+++|...--.+..| -|+.+.||+|||+++.+|++... ..|..+.|++|+.-||.+-++++..+...
T Consensus 78 ~lGm-~~ydVQliGg~~Lh~G----~iaEM~TGEGKTLvA~l~a~l~a---l~G~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 78 VMGM-RHFDVQLIGGMTLHEG----KIAEMRTGEGKTLVGTLAVYLNA---LSGKGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred HhCC-CcchhHHHhhhHhccC----ccccccCCCCChHHHHHHHHHHH---HcCCCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 3564 4899998776666655 68899999999999999887554 35668999999999999999999999999
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcCc------cCCCceEEEEEeCchhhhcccC------
Q 010762 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFSRLKILVYDEADHMLDEAG------ 264 (502)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~~~~lVlDEah~l~~~~~------ 264 (502)
+|+++.++.+...... +.....+||+++|..-| .++|+.+. .....+.++|+||+|.++-+..
T Consensus 150 lGl~v~~i~~~~~~~e----rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 150 LGLSVGIVTPFQPPEE----KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cCCEEEEECCCCCHHH----HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 9999988766543322 12223489999999886 34443321 1247889999999998652100
Q ss_pred ---------CHHHHHHHHHHhhhc----------------CCCeeEEE--------------------------------
Q 010762 265 ---------FRDDSLRIMKDIERS----------------SGHCQVLL-------------------------------- 287 (502)
Q Consensus 265 ---------~~~~~~~i~~~l~~~----------------~~~~q~v~-------------------------------- 287 (502)
....+..++..+... -...+.+.
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 111122222323110 00001111
Q ss_pred --------------------------------------------------------------------------------
Q 010762 288 -------------------------------------------------------------------------------- 287 (502)
Q Consensus 288 -------------------------------------------------------------------------------- 287 (502)
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence
Q ss_pred ----EeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhH
Q 010762 288 ----FSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSA 363 (502)
Q Consensus 288 ----~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~ 363 (502)
||+|......++. ...+.. .+.++ ...+..........+.....|...+...+......+.|+||-+.|++..
T Consensus 386 kLsGMTGTa~te~~Ef~-~iY~l~-Vv~IP-TnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 386 KLSGMTGTADTEAFEFR-QIYGLD-VVVIP-PNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred hhccCCCCCHHHHHHHH-HHhCCC-EEECC-CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 1111111111100 000000 00000 0000000011111223456788888888888888899999999999999
Q ss_pred HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC-CeEEEEcCccccCCCCC-------------------------
Q 010762 364 SALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL-TQVLISTDVLARGFDQQ------------------------- 417 (502)
Q Consensus 364 ~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~-~~iLv~T~~~~~Gldi~------------------------- 417 (502)
+.++..|...+++.-+|+......+-..+- ..|. -.|.|||++++||-||.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999998888875544333333 3443 46999999999999995
Q ss_pred ------------CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccH
Q 010762 418 ------------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDM 468 (502)
Q Consensus 418 ------------~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~ 468 (502)
+==|||--..+ .|..--.|-.||+||-|.+|.+-.|++-+|+.
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerh--------eSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERH--------ESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccC--------chHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 11245554455 67777889999999999999999888866553
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=3.4e-18 Score=184.22 Aligned_cols=160 Identities=13% Similarity=0.100 Sum_probs=105.6
Q ss_pred HHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccC
Q 010762 337 MVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFGY--EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 413 (502)
Q Consensus 337 ~~l~~~l~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 413 (502)
..+...+.... ...+++|||++|.+..+.++..|..... ....+.-+++...|..++++|+.+...||++|+.+.+|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 34444444443 2568999999999999999999975422 12222223433568889999999888999999999999
Q ss_pred CCCCC--CCEEEEecCCCCCCCC----------------------CCCCccchhhhhcccccCCCcceEEEEeeCCc-cH
Q 010762 414 FDQQQ--VNLIVNYDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD-DM 468 (502)
Q Consensus 414 ldi~~--v~~VI~~~~p~~~~~~----------------------~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~-~~ 468 (502)
+|+|+ +++||...+|+..... +|..+..+.|.+||+-|...+..+++++...- ..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 99996 5889999999754331 22234445899999999976544554554221 23
Q ss_pred HHHHHHHHHhCCccccccCCHHHHHHHHH
Q 010762 469 IIMEKIERYFDIKVTEVRNSDEDFKAALK 497 (502)
Q Consensus 469 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 497 (502)
.|-+.|.+.+.. +.....+..++...++
T Consensus 898 ~Yg~~~l~sLP~-~~~~~~~~~~~~~~~~ 925 (928)
T PRK08074 898 SYGKYFLESLPT-VPVYEGTLEELLEEVE 925 (928)
T ss_pred hHHHHHHHhCCC-CCcccCCHHHHHHHHH
Confidence 454555555543 3223346666655544
No 130
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.82 E-value=2.1e-19 Score=176.99 Aligned_cols=324 Identities=18% Similarity=0.180 Sum_probs=212.6
Q ss_pred CcHHHHhhhhhhc--CCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCce
Q 010762 124 PSKIQAISLPMIL--TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (502)
Q Consensus 124 p~~~Q~~~i~~il--~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (502)
+-++|.-.+.+++ -.+.-+.|+..++|.|||.. .++.+..|.+.+..+.-|||||...| ..|.++|.+|+..+ .
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl--~ 475 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSL--K 475 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCce--E
Confidence 6688888877763 22236789999999999988 56667777666666678999999877 77888899998774 4
Q ss_pred eeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHc-CccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 202 SECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 202 ~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
+.+.+|....... ........+.+|+++|+.....--.. ..+.-.++.++|+||+|.+.+.. ..-+..++..-
T Consensus 476 Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~--SeRy~~LM~I~-- 551 (941)
T KOG0389|consen 476 VEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT--SERYKHLMSIN-- 551 (941)
T ss_pred EEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc--hHHHHHhcccc--
Confidence 5555555432211 11122233789999999765321111 11234567899999999887632 12223333222
Q ss_pred cCCCeeEEEEeecCC-hhHHH-----------------------------------------------------------
Q 010762 279 SSGHCQVLLFSATFN-ETVKN----------------------------------------------------------- 298 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~-~~~~~----------------------------------------------------------- 298 (502)
.-+.+++|+|+- .++.+
T Consensus 552 ---An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~ 628 (941)
T KOG0389|consen 552 ---ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRL 628 (941)
T ss_pred ---ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 225677788820 00000
Q ss_pred --------------------------HHHHHhcCC----ceeeecccccc-----------ccc----------------
Q 010762 299 --------------------------FVTRIVKDY----NQLFVKKEELS-----------LES---------------- 321 (502)
Q Consensus 299 --------------------------~~~~~~~~~----~~~~~~~~~~~-----------~~~---------------- 321 (502)
+...+...+ ........... .+.
T Consensus 629 K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ma 708 (941)
T KOG0389|consen 629 KSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMA 708 (941)
T ss_pred HHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHH
Confidence 000000000 00000000000 000
Q ss_pred --------------------------------ceEEE----E----ecCChHHHHHHHHHHHHHhcccCCcEEEEcCChh
Q 010762 322 --------------------------------VKQYK----V----YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKN 361 (502)
Q Consensus 322 --------------------------------~~~~~----~----~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~ 361 (502)
..++. + .......|+..|..+|......+.++|||.+-..
T Consensus 709 k~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTq 788 (941)
T KOG0389|consen 709 KRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQ 788 (941)
T ss_pred HHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHH
Confidence 00000 0 0001245677777777777778899999999999
Q ss_pred hHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC--CeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCc
Q 010762 362 SASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL--TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDC 439 (502)
Q Consensus 362 ~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~--~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~ 439 (502)
....|.-.|..+++....+.|...-..|..++..|...+ .-+|++|.+.+-|||+.++++||.||..+ ++
T Consensus 789 mLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dF--------NP 860 (941)
T KOG0389|consen 789 MLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDF--------NP 860 (941)
T ss_pred HHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCC--------CC
Confidence 999999999999999999999999999999999998665 34689999999999999999999999994 45
Q ss_pred cchhhhhcccccCCC--cceEEEEeeCCc
Q 010762 440 EVYLHRIGRAGRFGR--KGVVFNLLMDGD 466 (502)
Q Consensus 440 ~~y~qr~GR~~R~g~--~g~~~~~~~~~~ 466 (502)
-.-.|.--|+.|.|+ +-.++.|++...
T Consensus 861 ~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 861 YDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred cccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 557899999999886 456788888654
No 131
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=4.7e-19 Score=168.32 Aligned_cols=362 Identities=15% Similarity=0.101 Sum_probs=245.9
Q ss_pred HHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH
Q 010762 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (502)
Q Consensus 110 ~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (502)
++...+...+.......+|..++..+-+| +++++.-.|.+||.++|.+.....+..- .....+++.|+.++++...+
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G--~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEG--RADGGNEARQAGKGTCPTSGSRKFQTLC-HATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhc--ccccccchhhcCCccCcccchhhhhhcC-cccceecchhHHHHhhccCC
Confidence 44555555567778889999999999999 9999999999999999988776554322 23357889999998876444
Q ss_pred HHHHhhcccC-ceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccC----CCceEEEEEeCchhhhcccC
Q 010762 190 VLRKMGKHTG-ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLG----FSRLKILVYDEADHMLDEAG 264 (502)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~----~~~~~~lVlDEah~l~~~~~ 264 (502)
.+.-...... ....++-...+............+..++++.|..+......+.+. +-...++++||+|.++. .
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~--~ 427 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF--P 427 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec--c
Confidence 2221111000 000011111111111112223346789999998876555433332 33456899999998765 2
Q ss_pred CHHHHHHHHHHhhh------cCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCCh------
Q 010762 265 FRDDSLRIMKDIER------SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE------ 332 (502)
Q Consensus 265 ~~~~~~~i~~~l~~------~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 332 (502)
|.......++.+.. ...+.|++-.|||+...++.. .-+.+...+........+.+-.++++..+..
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~--~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~ 505 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLR--SELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKS 505 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHH--HHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchh
Confidence 33333333333322 133679999999998776543 2233344455555556666666766665431
Q ss_pred --HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----C----CcEEEecCCCCHHHHHHHHHHHHcCCCe
Q 010762 333 --LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----G----YEVTTIMGATIQEERDKIVKEFKDGLTQ 402 (502)
Q Consensus 333 --~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~----~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 402 (502)
..++.....++.+....+-++|-||++++-|+.+....++. + -.+..+.|+-..++|.++....--|+..
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 23344444445566667889999999999999887655432 2 1356788999999999999998899999
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEee-CCccHHHHHHHHHHhCCc
Q 010762 403 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM-DGDDMIIMEKIERYFDIK 481 (502)
Q Consensus 403 iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~-~~~~~~~~~~i~~~l~~~ 481 (502)
-+|+|++++-|||+.+++.|++.++| .|+..+-|..||+||.+++..++.+.. ..-|..++..=...++..
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP--------~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFP--------GSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCc--------hhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 99999999999999999999999999 899999999999999988776554433 345777888778888887
Q ss_pred ccccc
Q 010762 482 VTEVR 486 (502)
Q Consensus 482 ~~~~~ 486 (502)
..++.
T Consensus 658 N~EL~ 662 (1034)
T KOG4150|consen 658 NEELH 662 (1034)
T ss_pred cceeE
Confidence 77775
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=8.6e-18 Score=170.50 Aligned_cols=326 Identities=15% Similarity=0.155 Sum_probs=211.6
Q ss_pred HhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 116 ~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
...+|.. |+++|...--.+..| -|....||-|||+++.+|+.-.. ..|..+-|++..--||.-=.+++..+.
T Consensus 72 ~R~lG~r-~ydVQliGglvLh~G----~IAEMkTGEGKTLvAtLpayLnA---L~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 72 KRVLGKR-PYDVQIIGGIILDLG----SVAEMKTGEGKTITSIAPVYLNA---LTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHhCCC-cCchHHHHHHHHhcC----CeeeecCCCCccHHHHHHHHHHH---hcCCceEEEecchhhhhhhHHHHHHHH
Confidence 3335664 999999887776666 47999999999999998885332 245568888999999999999999999
Q ss_pred cccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcCc------cCCCceEEEEEeCchhhhcccC----
Q 010762 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFSRLKILVYDEADHMLDEAG---- 264 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~~~~~lVlDEah~l~~~~~---- 264 (502)
..+|+++.+...+.... .+.....|||+++|...| .++|+.+. .....+.+.|+||+|.++-+..
T Consensus 144 ~fLGLsvG~i~~~~~~~----~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPL 219 (925)
T PRK12903 144 NFLGLSVGINKANMDPN----LKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPL 219 (925)
T ss_pred HHhCCceeeeCCCCChH----HHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcc
Confidence 99999988776543222 223334689999999876 34444321 2246788999999997542100
Q ss_pred -----------CHHHHHHHHHHhhhc----CCCe----------------------------------------------
Q 010762 265 -----------FRDDSLRIMKDIERS----SGHC---------------------------------------------- 283 (502)
Q Consensus 265 -----------~~~~~~~i~~~l~~~----~~~~---------------------------------------------- 283 (502)
+-..+..++..+... ....
T Consensus 220 IISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~r 299 (925)
T PRK12903 220 IISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKE 299 (925)
T ss_pred cccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhc
Confidence 001111111111100 0000
Q ss_pred ---------------------------------------------------------------eEEEEeecCChhHHHHH
Q 010762 284 ---------------------------------------------------------------QVLLFSATFNETVKNFV 300 (502)
Q Consensus 284 ---------------------------------------------------------------q~v~~SAT~~~~~~~~~ 300 (502)
++.+||+|....-.+|.
T Consensus 300 d~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~ 379 (925)
T PRK12903 300 DVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI 379 (925)
T ss_pred CCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH
Confidence 22333333322222222
Q ss_pred HHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEe
Q 010762 301 TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTI 380 (502)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 380 (502)
.-+-. ..+.++. ..+..........+.....|...+...+......+.|+||.|.|++.++.++..|...|+....|
T Consensus 380 ~iY~l--~Vv~IPT-nkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vL 456 (925)
T PRK12903 380 DIYNM--RVNVVPT-NKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVL 456 (925)
T ss_pred HHhCC--CEEECCC-CCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceee
Confidence 11111 1111111 11111111111222345677777777777777789999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCC-CeEEEEcCccccCCCCCCCC--------EEEEecCCCCCCCCCCCCccchhhhhccccc
Q 010762 381 MGATIQEERDKIVKEFKDGL-TQVLISTDVLARGFDQQQVN--------LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGR 451 (502)
Q Consensus 381 ~~~~~~~~r~~~~~~f~~~~-~~iLv~T~~~~~Gldi~~v~--------~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R 451 (502)
++... +++.-+-. ..|. -.|.|||++++||.||.--. |||....| .|..--.|..||+||
T Consensus 457 NAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerh--------eSrRIDnQLrGRaGR 525 (925)
T PRK12903 457 NAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKA--------ESRRIDNQLRGRSGR 525 (925)
T ss_pred cccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccC--------chHHHHHHHhccccc
Confidence 98754 33333322 3453 46899999999999997332 78877777 677778899999999
Q ss_pred CCCcceEEEEeeCCcc
Q 010762 452 FGRKGVVFNLLMDGDD 467 (502)
Q Consensus 452 ~g~~g~~~~~~~~~~~ 467 (502)
.|.+|.+..|++-.|+
T Consensus 526 QGDpGss~f~lSLeD~ 541 (925)
T PRK12903 526 QGDVGESRFFISLDDQ 541 (925)
T ss_pred CCCCCcceEEEecchH
Confidence 9999999988876554
No 133
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.80 E-value=2.2e-18 Score=154.24 Aligned_cols=186 Identities=28% Similarity=0.396 Sum_probs=140.1
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
+++..|+++|.++++.++.+. +.+++.++||+|||.+++.+++..+.... ..+++|++|++.++.|+...+..+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~-~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGL-RDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 677889999999999998753 78999999999999999999888876542 4579999999999999999998877654
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
........++.... ...........+|+++|++.+.+.+.........++++|+||+|.+... .+...+..++..+.
T Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~- 158 (201)
T smart00487 82 GLKVVGLYGGDSKR-EQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLP- 158 (201)
T ss_pred CeEEEEEeCCcchH-HHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCC-
Confidence 42333333332211 1111111222389999999999999887666788999999999999863 56666777766663
Q ss_pred cCCCeeEEEEeecCChhHHHHHHHHhcCCceee
Q 010762 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLF 311 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 311 (502)
+..+++++|||++.........+......+.
T Consensus 159 --~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 159 --KNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred --ccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 3678999999999888888777776544443
No 134
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.80 E-value=1.7e-17 Score=155.49 Aligned_cols=329 Identities=14% Similarity=0.150 Sum_probs=209.0
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCcee
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (502)
.+.|+|+..+...++. +..+++...+|.|||+.++.-+- .+. .....||+||. .+-..|.+.+.+|.....- +
T Consensus 198 ~LlPFQreGv~faL~R-gGR~llADeMGLGKTiQAlaIA~-yyr---aEwplliVcPA-svrftWa~al~r~lps~~p-i 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALER-GGRILLADEMGLGKTIQALAIAR-YYR---AEWPLLIVCPA-SVRFTWAKALNRFLPSIHP-I 270 (689)
T ss_pred hhCchhhhhHHHHHhc-CCeEEEecccccchHHHHHHHHH-HHh---hcCcEEEEecH-HHhHHHHHHHHHhcccccc-e
Confidence 3559999999888765 37899999999999998554333 322 23357999997 4678899999998776543 2
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC
Q 010762 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~ 282 (502)
..+.+... . .-.......|.|..++.+..+-. .+.-..+++||+||.|.+.+. -......++..+.. .
T Consensus 271 ~vv~~~~D-~----~~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s--ktkr~Ka~~dllk~---a 338 (689)
T KOG1000|consen 271 FVVDKSSD-P----LPDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS--KTKRTKAATDLLKV---A 338 (689)
T ss_pred EEEecccC-C----ccccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc--chhhhhhhhhHHHH---h
Confidence 22222211 1 01111234688999988765432 233445889999999998862 22334444444433 3
Q ss_pred eeEEEEeecCC-------------------hhHHHHHHHHhcCCc-eeeeccc--------------------------c
Q 010762 283 CQVLLFSATFN-------------------ETVKNFVTRIVKDYN-QLFVKKE--------------------------E 316 (502)
Q Consensus 283 ~q~v~~SAT~~-------------------~~~~~~~~~~~~~~~-~~~~~~~--------------------------~ 316 (502)
..+|++|+|+. +..-++..+++.... .+..... .
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999942 122223333322110 0000000 0
Q ss_pred cccccceEEEEecCC------------------------------------hHHHHHHHHHHHHH----hcccCCcEEEE
Q 010762 317 LSLESVKQYKVYCPD------------------------------------ELAKVMVIRDRIFE----LGEKMGQTIIF 356 (502)
Q Consensus 317 ~~~~~~~~~~~~~~~------------------------------------~~~k~~~l~~~l~~----~~~~~~~~lVF 356 (502)
..+..-.+..+.+.. ...|+..+.+.|.. .-.++.+.+||
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 000111111111110 11122233333333 22356789999
Q ss_pred cCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC-CeE-EEEcCccccCCCCCCCCEEEEecCCCCCCCC
Q 010762 357 VRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL-TQV-LISTDVLARGFDQQQVNLIVNYDPPVKHGKH 434 (502)
Q Consensus 357 ~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~-~~i-Lv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~ 434 (502)
|.-....+.+...+++.++....+.|..+...|....+.|+..+ +.| +++-.+++.||++...+.|++..++|++
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP--- 575 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP--- 575 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC---
Confidence 99999999999999999999999999999999999999998654 444 5666788999999999999999999754
Q ss_pred CCCCccchhhhhcccccCCCcceEEEEe--eCC-ccHHHHHHHHHHh
Q 010762 435 LEPDCEVYLHRIGRAGRFGRKGVVFNLL--MDG-DDMIIMEKIERYF 478 (502)
Q Consensus 435 ~~~s~~~y~qr~GR~~R~g~~g~~~~~~--~~~-~~~~~~~~i~~~l 478 (502)
.-.+|.-.|+.|.|++..+.+.| ..+ -|..++..+.+.+
T Consensus 576 -----gvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 576 -----GVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred -----ceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 44899999999999875543333 222 2456666666665
No 135
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.79 E-value=3.7e-17 Score=165.35 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=84.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC----CCeEEEEcCccccCCCC--------
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG----LTQVLISTDVLARGFDQ-------- 416 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~----~~~iLv~T~~~~~Gldi-------- 416 (502)
.+++++|.+.|....+.++..|...--..+.+.|..+ .+...+++|+.. ...||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 6789999999999999999999654223344445442 456688889874 68999999999999999
Q ss_pred C--CCCEEEEecCCCCCCCC-----------------CCCCccchhhhhcccccCCCc--ceEEEEeeCC
Q 010762 417 Q--QVNLIVNYDPPVKHGKH-----------------LEPDCEVYLHRIGRAGRFGRK--GVVFNLLMDG 465 (502)
Q Consensus 417 ~--~v~~VI~~~~p~~~~~~-----------------~~~s~~~y~qr~GR~~R~g~~--g~~~~~~~~~ 465 (502)
| .+++||...+|+...++ +|..+-.+.|-+||.-|...+ -.++.++.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 48999999999765432 122233457999999998765 4455555543
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=2.2e-18 Score=143.07 Aligned_cols=120 Identities=38% Similarity=0.628 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccC
Q 010762 334 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 413 (502)
Q Consensus 334 ~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 413 (502)
.+...+...+.......+++||||++...++.+++.|...+..+..+||+++..+|..+++.|.++...+|++|..+++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56666666666655567899999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEE
Q 010762 414 FDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461 (502)
Q Consensus 414 ldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~ 461 (502)
+|+|++++||+++.| .+...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~--------~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLP--------WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCC--------CCHHHheecccccccCCCCceEEeC
Confidence 999999999999999 5788899999999999998887753
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.79 E-value=2.9e-17 Score=167.70 Aligned_cols=288 Identities=15% Similarity=0.158 Sum_probs=181.1
Q ss_pred HHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 114 ~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
+....+|+. |+++|..+.-.+..| -|+.+.||.|||+++.+|+.-.. ..|..+.||+++..||.+-++++..
T Consensus 68 a~~R~lG~r-~ydvQlig~l~L~~G----~IaEm~TGEGKTL~a~l~ayl~a---L~G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 68 ASFRTLGLR-HFDVQLIGGLVLNDG----KIAEMKTGEGKTLVATLPAYLNA---LTGKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred HHHHHhCCC-CCchHhhhhHhhcCC----ccccccCCCCchHHHHHHHHHHH---hcCCceEEEeCCHHHHHHHHHHHHH
Confidence 333446776 999998876555544 79999999999999999885322 2466799999999999999999999
Q ss_pred hhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHH-HHHHcC------ccCCCceEEEEEeCchhhhcccC--
Q 010762 194 MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK-KWMSAK------KLGFSRLKILVYDEADHMLDEAG-- 264 (502)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~------~~~~~~~~~lVlDEah~l~~~~~-- 264 (502)
+...+|+++.+..++.... .+.....|||+++|...|- ++|+.+ ......+.+.|+||+|.++-+..
T Consensus 140 vy~~LGLsvg~i~~~~~~~----err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArT 215 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSE----ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEART 215 (870)
T ss_pred HHHHcCCceeeeCCCCChH----HHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCC
Confidence 9999999998876544332 2333446899999997552 333322 12346788999999997542100
Q ss_pred -------------CHHHHHHHHHHhhhc----------------------------------------------------
Q 010762 265 -------------FRDDSLRIMKDIERS---------------------------------------------------- 279 (502)
Q Consensus 265 -------------~~~~~~~i~~~l~~~---------------------------------------------------- 279 (502)
.......+.+.+...
T Consensus 216 PLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf 295 (870)
T CHL00122 216 PLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELF 295 (870)
T ss_pred ceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH
Confidence 000001111111000
Q ss_pred CCC-------------------------------------------------------------eeEEEEeecCChhHHH
Q 010762 280 SGH-------------------------------------------------------------CQVLLFSATFNETVKN 298 (502)
Q Consensus 280 ~~~-------------------------------------------------------------~q~v~~SAT~~~~~~~ 298 (502)
..+ ..+.+||+|....-.+
T Consensus 296 ~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E 375 (870)
T CHL00122 296 FKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE 375 (870)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH
Confidence 000 1334555554433222
Q ss_pred HHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEE
Q 010762 299 FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT 378 (502)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~ 378 (502)
+ ....+... +.++ ...+................|...+...+......+.|+||-|.|++..+.++..|...|++..
T Consensus 376 f-~~iY~l~v-v~IP-tnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~ 452 (870)
T CHL00122 376 F-EKIYNLEV-VCIP-THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQ 452 (870)
T ss_pred H-HHHhCCCE-EECC-CCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccc
Confidence 2 22222211 1111 1111111112222334556677777777777777899999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHcCC-CeEEEEcCccccCCCCC
Q 010762 379 TIMGATIQEERDKIVKEFKDGL-TQVLISTDVLARGFDQQ 417 (502)
Q Consensus 379 ~l~~~~~~~~r~~~~~~f~~~~-~~iLv~T~~~~~Gldi~ 417 (502)
+|++.-....++.-+-. ..|. -.|.|||++++||.||.
T Consensus 453 vLNAk~~~~~~EA~IIA-~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 453 LLNAKPENVRRESEIVA-QAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred eeeCCCccchhHHHHHH-hcCCCCcEEEeccccCCCcCee
Confidence 99987422223322221 1343 46899999999999986
No 138
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.79 E-value=1.1e-17 Score=171.59 Aligned_cols=332 Identities=19% Similarity=0.199 Sum_probs=206.4
Q ss_pred CcHHHHhhhhhh--cCCCCccEEEECcCCCcchhHhHHHHHhccCCC------CCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 124 PSKIQAISLPMI--LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN------LKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 124 p~~~Q~~~i~~i--l~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~------~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
++.+|...+.++ |+.=+-+-|+|..+|-|||+..+..+....... ......|||||+ .|+--|..++.+|+
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 455788888776 332125679999999999998554443322211 123348999997 69999999999998
Q ss_pred cccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHH
Q 010762 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~ 275 (502)
..+.+ ....|... .....+....+.+|+|+.++.+..-+.. +.-..+.+.|+||.|.+.+. ...+...++.
T Consensus 1055 pfL~v--~~yvg~p~--~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~---ktkl~kavkq 1125 (1549)
T KOG0392|consen 1055 PFLKV--LQYVGPPA--ERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS---KTKLTKAVKQ 1125 (1549)
T ss_pred chhhh--hhhcCChH--HHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch---HHHHHHHHHH
Confidence 87433 23333221 1122333444579999999887533221 11234568999999988763 2334445555
Q ss_pred hhhcCCCeeEEEEeecC---------------------------------------------------------------
Q 010762 276 IERSSGHCQVLLFSATF--------------------------------------------------------------- 292 (502)
Q Consensus 276 l~~~~~~~q~v~~SAT~--------------------------------------------------------------- 292 (502)
+... ..+++|+|+
T Consensus 1126 L~a~----hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLP 1201 (1549)
T KOG0392|consen 1126 LRAN----HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLP 1201 (1549)
T ss_pred Hhhc----ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHH
Confidence 5442 358889992
Q ss_pred --------------Ch------------hHHHHHHHHhcC---Cceeeeccccccccc---------------ceEEE-E
Q 010762 293 --------------NE------------TVKNFVTRIVKD---YNQLFVKKEELSLES---------------VKQYK-V 327 (502)
Q Consensus 293 --------------~~------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------------~~~~~-~ 327 (502)
|+ -.+++...+... ............... ..+.. +
T Consensus 1202 F~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLv 1281 (1549)
T KOG0392|consen 1202 FLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALV 1281 (1549)
T ss_pred HHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCccee
Confidence 11 011111111111 000000000000000 00000 0
Q ss_pred ecC----------------------ChHHHHHHHHHHHHHhcc--------------cCCcEEEEcCChhhHHHHHHHHH
Q 010762 328 YCP----------------------DELAKVMVIRDRIFELGE--------------KMGQTIIFVRTKNSASALHKALK 371 (502)
Q Consensus 328 ~~~----------------------~~~~k~~~l~~~l~~~~~--------------~~~~~lVF~~s~~~~~~l~~~L~ 371 (502)
..+ ....|+..+.+++....- .++|+||||+-+..++.+.+-|-
T Consensus 1282 lt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~ 1361 (1549)
T KOG0392|consen 1282 LTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLF 1361 (1549)
T ss_pred eCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHh
Confidence 000 122356666665554321 24689999999999999998876
Q ss_pred hC---CCcEEEecCCCCHHHHHHHHHHHHcC-CCeE-EEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhh
Q 010762 372 DF---GYEVTTIMGATIQEERDKIVKEFKDG-LTQV-LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRI 446 (502)
Q Consensus 372 ~~---~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~i-Lv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~ 446 (502)
+. .+..+.+.|..++.+|.++.++|+++ .++| |++|.+.+-|+|+.++++||+++-.|++.. -+|.+
T Consensus 1362 k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMr--------DLQAM 1433 (1549)
T KOG0392|consen 1362 KKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR--------DLQAM 1433 (1549)
T ss_pred hhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchh--------hHHHH
Confidence 54 23455899999999999999999998 5676 577899999999999999999999987655 58999
Q ss_pred cccccCCCcce--EEEEeeCCccHHHHHHHHHH
Q 010762 447 GRAGRFGRKGV--VFNLLMDGDDMIIMEKIERY 477 (502)
Q Consensus 447 GR~~R~g~~g~--~~~~~~~~~~~~~~~~i~~~ 477 (502)
-||.|.|++.. ++.|++-+.=...+..+.++
T Consensus 1434 DRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1434 DRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred HHHHhhcCceeeeeeeehhcccHHHHHhhHHHH
Confidence 99999998764 56777755533444444444
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.78 E-value=7e-19 Score=174.57 Aligned_cols=328 Identities=16% Similarity=0.244 Sum_probs=195.4
Q ss_pred CCCCCcHHHHhhhhhhcCC---CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 120 KFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 120 g~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
.-..|+|+|+.||...++| +.|.-+| +.+|+|||+..| -+.+.+.. .++|+|+|+..|..|..+.+..-.
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKTfTsL-kisEala~----~~iL~LvPSIsLLsQTlrew~~~~- 230 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKTFTSL-KISEALAA----ARILFLVPSISLLSQTLREWTAQK- 230 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEE-EecCCCccchHH-HHHHHHhh----hheEeecchHHHHHHHHHHHhhcc-
Confidence 4457999999999999876 2244444 448999999854 45555432 589999999999999887665422
Q ss_pred ccCceeeEeecCCCCCcc--c---------------------ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEE
Q 010762 197 HTGITSECAVPTDSTNYV--P---------------------ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~--~---------------------~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVl 253 (502)
...++...+......... . .......+--|+++|++.+...-......+..+++||+
T Consensus 231 ~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliic 310 (1518)
T COG4889 231 ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIIC 310 (1518)
T ss_pred CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEe
Confidence 122333222222111110 0 00112234569999999999888887888999999999
Q ss_pred eCchhhhcccCCHHHHHHHHHHhh--hcCCCeeEEEEeecCC---hhHH------------------------------H
Q 010762 254 DEADHMLDEAGFRDDSLRIMKDIE--RSSGHCQVLLFSATFN---ETVK------------------------------N 298 (502)
Q Consensus 254 DEah~l~~~~~~~~~~~~i~~~l~--~~~~~~q~v~~SAT~~---~~~~------------------------------~ 298 (502)
||||+....+--.+. ..-+..+. .+-+..+.+.||||+. +..+ .
T Consensus 311 DEAHRTtGa~~a~dd-~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeA 389 (1518)
T COG4889 311 DEAHRTTGATLAGDD-KSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEA 389 (1518)
T ss_pred cchhccccceecccC-cccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHH
Confidence 999996642100000 00000000 0011235588888852 1111 1
Q ss_pred HHHHHhcCCceeeecccccccccceEEEEecCCh------HHHHHHHHHHHHHhcc-------------cCCcEEEEcCC
Q 010762 299 FVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE------LAKVMVIRDRIFELGE-------------KMGQTIIFVRT 359 (502)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~~~~~-------------~~~~~lVF~~s 359 (502)
..+.++.++..+.............+....-+.. ..++.-...-+.+... +..+.|-||.+
T Consensus 390 v~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~ 469 (1518)
T COG4889 390 VERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKD 469 (1518)
T ss_pred HHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHh
Confidence 1122334444443333322222221111111111 1121111111222111 12467899999
Q ss_pred hhhHHHHHHHHHh-------------CC--CcEEEecCCCCHHHHHHHHHH---HHcCCCeEEEEcCccccCCCCCCCCE
Q 010762 360 KNSASALHKALKD-------------FG--YEVTTIMGATIQEERDKIVKE---FKDGLTQVLISTDVLARGFDQQQVNL 421 (502)
Q Consensus 360 ~~~~~~l~~~L~~-------------~~--~~~~~l~~~~~~~~r~~~~~~---f~~~~~~iLv~T~~~~~Gldi~~v~~ 421 (502)
+++...++..+.. .+ +.+....|.|+..+|.+.++. |....++||--..++++|+|+|.++.
T Consensus 470 I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDs 549 (1518)
T COG4889 470 IKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDS 549 (1518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccce
Confidence 9998888776643 13 345567789999999655543 34567889988899999999999999
Q ss_pred EEEecCCCCCCCCCCCCccchhhhhcccccCC---CcceEEEEee
Q 010762 422 IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG---RKGVVFNLLM 463 (502)
Q Consensus 422 VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g---~~g~~~~~~~ 463 (502)
||+|++- .|+.+.+|.+||+.|.. +.|.+|+-+.
T Consensus 550 ViFf~pr--------~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 550 VIFFDPR--------SSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred EEEecCc--------hhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 9999988 88999999999999953 2466665443
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.3e-18 Score=127.59 Aligned_cols=78 Identities=45% Similarity=0.744 Sum_probs=74.9
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhc
Q 010762 368 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIG 447 (502)
Q Consensus 368 ~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~G 447 (502)
++|+..++.+..+||++++.+|..+++.|+.+...|||||+++++|+|+|.+++||++++| .|...|.|++|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~--------~~~~~~~Q~~G 72 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPP--------WSPEEYIQRIG 72 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSE--------SSHHHHHHHHT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccC--------CCHHHHHHHhh
Confidence 4688899999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred ccccCC
Q 010762 448 RAGRFG 453 (502)
Q Consensus 448 R~~R~g 453 (502)
|++|.|
T Consensus 73 R~~R~g 78 (78)
T PF00271_consen 73 RAGRIG 78 (78)
T ss_dssp TSSTTT
T ss_pred cCCCCC
Confidence 999986
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=1e-16 Score=152.57 Aligned_cols=293 Identities=20% Similarity=0.256 Sum_probs=182.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+-++-+|||.||||.- +++++.... ..++.-|.|-||..+++.++..+..+++ ..|..... ....
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~gipCdL----~TGeE~~~----~~~~ 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNALGIPCDL----LTGEERRF----VLDN 256 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhcCCCccc----cccceeee----cCCC
Confidence 5677889999999987 455654333 4588999999999999999987655443 22221111 1111
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc-cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHH
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNF 299 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~-~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~ 299 (502)
...++.+-||-++.. .-..+++.|+||+++|.+. .|+ .+...++..... ... +.+- +.+..+
T Consensus 257 ~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGw-AWTrALLGl~Ad---EiH---LCGe--psvldl 319 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGW-AWTRALLGLAAD---EIH---LCGE--PSVLDL 319 (700)
T ss_pred CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccch-HHHHHHHhhhhh---hhh---ccCC--chHHHH
Confidence 223677778865431 1345889999999999873 222 222222222111 111 1111 334444
Q ss_pred HHHHhcCCce-eeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc-E
Q 010762 300 VTRIVKDYNQ-LFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE-V 377 (502)
Q Consensus 300 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~ 377 (502)
++.++..... +.+.. ...+..+ ..+. .+...+.. . ..|.++| |-|++.+..+...+.+.+.. +
T Consensus 320 V~~i~k~TGd~vev~~-YeRl~pL-------~v~~----~~~~sl~n-l-k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~ 384 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVRE-YERLSPL-------VVEE----TALGSLSN-L-KPGDCVV-AFSKKDIFTVKKKIEKAGNHKC 384 (700)
T ss_pred HHHHHhhcCCeeEEEe-ecccCcc-------eehh----hhhhhhcc-C-CCCCeEE-EeehhhHHHHHHHHHHhcCcce
Confidence 4544432111 11100 0000000 0000 11111222 2 3344444 66788899999999887665 9
Q ss_pred EEecCCCCHHHHHHHHHHHHc--CCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCC-CCCCccchhhhhcccccCCC
Q 010762 378 TTIMGATIQEERDKIVKEFKD--GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKH-LEPDCEVYLHRIGRAGRFGR 454 (502)
Q Consensus 378 ~~l~~~~~~~~r~~~~~~f~~--~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~-~~~s~~~y~qr~GR~~R~g~ 454 (502)
++++|++++..|.+-...|++ ++++||||||++++|||+ +++.||+|++-.-.+.. .+.+..+..|..||+||.|.
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccccc
Confidence 999999999999999999987 889999999999999999 79999998876433332 34567788999999999874
Q ss_pred ---cceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 455 ---KGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 455 ---~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
.|.+.+|.. +| +..+.+.+..+++++.
T Consensus 464 ~~~~G~vTtl~~--eD---L~~L~~~l~~p~epi~ 493 (700)
T KOG0953|consen 464 KYPQGEVTTLHS--ED---LKLLKRILKRPVEPIK 493 (700)
T ss_pred CCcCceEEEeeH--hh---HHHHHHHHhCCchHHH
Confidence 588888875 33 4556666666665553
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=4.9e-16 Score=158.50 Aligned_cols=285 Identities=15% Similarity=0.161 Sum_probs=179.0
Q ss_pred hhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 117 ~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
..+|.. |+++|...--.+..| -|+.+.||-|||+++.+|+.-.. ..|..+-||+++.-||..=++++..+..
T Consensus 80 R~lG~r-~ydVQliGgl~Lh~G----~IAEM~TGEGKTL~atlpaylnA---L~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 80 RVLGMR-HFDVQLIGGMVLHEG----QIAEMKTGEGKTLVATLPSYLNA---LTGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred HHhCCC-cchhHHHhhhhhcCC----ceeeecCCCChhHHHHHHHHHHh---hcCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 335665 889998777666655 68999999999999998887543 3566799999999999999999999999
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-----HHHHHc--CccCCCceEEEEEeCchhhhcccC-----
Q 010762 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-----KKWMSA--KKLGFSRLKILVYDEADHMLDEAG----- 264 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-----~~~l~~--~~~~~~~~~~lVlDEah~l~~~~~----- 264 (502)
.+|+++.+...+... ..+.....|||+++|+..| .+.+.. .......+.+.|+||+|.++-+..
T Consensus 152 ~LGLtvg~i~~~~~~----~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 152 FLGLSVGLIQQDMSP----EERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HhCCeEEEECCCCCh----HHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccc
Confidence 999999887654322 2334445799999999887 444432 223457788999999998652100
Q ss_pred ----------CHHHHHHHHHHhhh------c-----CCCeeEEEEee---------------------------------
Q 010762 265 ----------FRDDSLRIMKDIER------S-----SGHCQVLLFSA--------------------------------- 290 (502)
Q Consensus 265 ----------~~~~~~~i~~~l~~------~-----~~~~q~v~~SA--------------------------------- 290 (502)
.......+.+.+.. . ....+.+.+|.
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 11112222232222 0 00112233322
Q ss_pred ---------------------------------------------------------------------------cCChh
Q 010762 291 ---------------------------------------------------------------------------TFNET 295 (502)
Q Consensus 291 ---------------------------------------------------------------------------T~~~~ 295 (502)
|....
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 11111
Q ss_pred HHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCC
Q 010762 296 VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY 375 (502)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 375 (502)
-.++..-+ +. ..+.+ +...+..........+.....|...+...+......+.|+||-+.|++..+.++..|...|+
T Consensus 388 ~~Ef~~iY-~l-~Vv~I-PTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi 464 (939)
T PRK12902 388 EVEFEKTY-KL-EVTVI-PTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGI 464 (939)
T ss_pred HHHHHHHh-CC-cEEEc-CCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 11100000 00 00000 00000000111111222456778888877888777899999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCC-CeEEEEcCccccCCCCC
Q 010762 376 EVTTIMGATIQEERDKIVKEFKDGL-TQVLISTDVLARGFDQQ 417 (502)
Q Consensus 376 ~~~~l~~~~~~~~r~~~~~~f~~~~-~~iLv~T~~~~~Gldi~ 417 (502)
++.+++......+++..+-. ..|. -.|-|||++++||-||.
T Consensus 465 ~h~vLNAk~~~~~~EA~IIa-~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 465 PHNLLNAKPENVEREAEIVA-QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred chheeeCCCcchHhHHHHHH-hcCCCCcEEEeccCCCCCcCEe
Confidence 99999987332233322221 2344 35899999999999986
No 143
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=7e-16 Score=158.93 Aligned_cols=324 Identities=18% Similarity=0.182 Sum_probs=207.3
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHH-HHhhcccCce
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL-RKMGKHTGIT 201 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~-~~~~~~~~~~ 201 (502)
...|+|.++++.+.+.+ .++++.+|+|||||.++-++++. .....+++++.|..+.+...++.+ +++....|..
T Consensus 1143 ~~n~iqtqVf~~~y~~n-d~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~ 1217 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTN-DNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLR 1217 (1674)
T ss_pred ccCCceEEEEeeeeccc-ceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCce
Confidence 44899999999998874 89999999999999999888876 345568999999999998888755 4566666666
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCH----HHHHHHHHHhh
Q 010762 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFR----DDSLRIMKDIE 277 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~----~~~~~i~~~l~ 277 (502)
+..+.|..+.. ..+....+|+|+||+++..+ + ....+++.|.||.|.+.+..|-. -.+..|...+.
T Consensus 1218 ~~~l~ge~s~~-----lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~ 1287 (1674)
T KOG0951|consen 1218 IVKLTGETSLD-----LKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLE 1287 (1674)
T ss_pred EEecCCccccc-----hHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHH
Confidence 66555554433 23334568999999996544 3 57788999999999877422210 01233334444
Q ss_pred hcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHH---HHHHHHHHHHhcccCCcEE
Q 010762 278 RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAK---VMVIRDRIFELGEKMGQTI 354 (502)
Q Consensus 278 ~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~l~~~~~~~~~~l 354 (502)
+ +.+++.+|..+...- +++.........+.......++....|.+-........ .......+.+....+++.+
T Consensus 1288 k---~ir~v~ls~~lana~-d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1288 K---KIRVVALSSSLANAR-DLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred h---heeEEEeehhhccch-hhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeE
Confidence 4 668888888876422 22111111111111122222222222222211111111 1122233455566789999
Q ss_pred EEcCChhhHHHHHHHHHhC----------------------CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcccc
Q 010762 355 IFVRTKNSASALHKALKDF----------------------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412 (502)
Q Consensus 355 VF~~s~~~~~~l~~~L~~~----------------------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~ 412 (502)
||+++++.|..++..|-.. .+.+.+=|-+++..+...+-.-|..|.+.|+|...- ..
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~ 1442 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CY 1442 (1674)
T ss_pred EEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cc
Confidence 9999999999887544221 122233388999999999999999999999988766 77
Q ss_pred CCCCCCCCEEEEecCCCCCCC---CCCCCccchhhhhcccccCCCcceEEEEeeCCccHHH
Q 010762 413 GFDQQQVNLIVNYDPPVKHGK---HLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMII 470 (502)
Q Consensus 413 Gldi~~v~~VI~~~~p~~~~~---~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~ 470 (502)
|+-.. .+.||..+.-.-.++ +...++...+|++|++.| .|+|++++...+.+.+
T Consensus 1443 ~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yy 1499 (1674)
T KOG0951|consen 1443 GTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYY 1499 (1674)
T ss_pred ccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHH
Confidence 77764 344554332221111 233568889999999998 5789988876544433
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.70 E-value=7.6e-15 Score=153.55 Aligned_cols=124 Identities=15% Similarity=0.222 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHH----cCCCeEEEEcCcc
Q 010762 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFK----DGLTQVLISTDVL 410 (502)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~----~~~~~iLv~T~~~ 410 (502)
...+...+.......+++|||++|....+.++..|... +..+ ..+|. ..|..+++.|+ .+...||++|..+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 33444445554445667999999999999999998743 3343 33453 24677887776 4677899999999
Q ss_pred ccCCCCCC--CCEEEEecCCCCCCCC----------------------CCCCccchhhhhcccccCCCcceEEEEee
Q 010762 411 ARGFDQQQ--VNLIVNYDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 411 ~~Gldi~~--v~~VI~~~~p~~~~~~----------------------~~~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
.+|+|+|+ +++||...+|+...+. +|.-+..+.|.+||.-|...+..+++++.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 99999996 7899999999754431 11122335799999999875544554554
No 145
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.70 E-value=8.2e-16 Score=156.79 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC--CeEEEEcCc
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL--TQVLISTDV 409 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~--~~iLv~T~~ 409 (502)
...|+..|.-+|.++...++++|||++.....+.|..+|+.+|+..+.|.|...-++|...+++|+... .++|++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 345666666667777778999999999999999999999999999999999999999999999998765 467889999
Q ss_pred cccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
.+.|||+.+++.||+||..|++..+ .-..+..||||++ ++-+.|.|++..
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMD--aQAQDrChRIGqt----RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMD--AQAQDRCHRIGQT----RDVHIYRLISER 1387 (1958)
T ss_pred CccccccccCceEEEecCCCCchhh--hHHHHHHHhhcCc----cceEEEEeeccc
Confidence 9999999999999999999865431 1233344555544 467888888754
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.67 E-value=9.1e-15 Score=154.27 Aligned_cols=134 Identities=17% Similarity=0.159 Sum_probs=95.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHHcCCC-eEEEEcCccccCCCCCC--CCEEEE
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLT-QVLISTDVLARGFDQQQ--VNLIVN 424 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~~~~-~iLv~T~~~~~Gldi~~--v~~VI~ 424 (502)
..+++|||++|.+..+.+++.|...... ....+|.. .+...++.|..+.- .++|+|..+++|+|+|+ .+.||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 4569999999999999999999876653 34444443 45588888987665 89999999999999995 588999
Q ss_pred ecCCCCCCCC----------------------CCCCccchhhhhcccccCCCcceEEEEeeCCcc-HHHHHHHHHHhCCc
Q 010762 425 YDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD-MIIMEKIERYFDIK 481 (502)
Q Consensus 425 ~~~p~~~~~~----------------------~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~-~~~~~~i~~~l~~~ 481 (502)
.++|+...++ ++..+....|.+||+-|...+..+++++...-. ..+-+.+.+.+...
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~ 634 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPF 634 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCC
Confidence 9999865543 233344458999999998766666656643222 22444555555544
Q ss_pred cccc
Q 010762 482 VTEV 485 (502)
Q Consensus 482 ~~~~ 485 (502)
+...
T Consensus 635 ~~~~ 638 (654)
T COG1199 635 PKSK 638 (654)
T ss_pred cccc
Confidence 4333
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.67 E-value=1.1e-15 Score=128.54 Aligned_cols=144 Identities=35% Similarity=0.457 Sum_probs=101.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+++++.++||+|||..++..+...... ....+++|++|++.++.|+.+.+..+... ...+....+........ ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE--KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH--HHh
Confidence 368999999999999988888776654 34568999999999999999988887764 44444444433222111 112
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecC
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATF 292 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~ 292 (502)
....+|+++|++.+...+.........++++|+||+|.+... .+.... ...........+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~~~~---~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ-GFGLLG---LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc-chHHHH---HHHHhhCCccceEEEEeccC
Confidence 346799999999998888776555667889999999998874 222221 11112223367899999995
No 148
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=2.3e-16 Score=159.50 Aligned_cols=322 Identities=17% Similarity=0.119 Sum_probs=200.8
Q ss_pred CCcHHHHhhhhhhcC--CCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCc
Q 010762 123 KPSKIQAISLPMILT--PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~--~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (502)
.+.++|...+.++.. +++-+-|++.++|-|||.+.+-.|...+......+.-|||||+..|.. |...|..|+....
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~- 471 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQ- 471 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccccee-
Confidence 678899988877632 334788999999999999844433333333344456799999988854 5666777765432
Q ss_pred eeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC
Q 010762 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~ 280 (502)
.....|.......-.......+.+|+++|++.+.. ....+.--+..++||||.|+|.+.. ..+...+.. ..
T Consensus 472 -~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~---~KLt~~L~t---~y 542 (1157)
T KOG0386|consen 472 -KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI---CKLTDTLNT---HY 542 (1157)
T ss_pred -eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh---hHHHHHhhc---cc
Confidence 21222221111111222333678999999988754 1112223345689999999987631 111111111 11
Q ss_pred CCeeEEEEeec---------------------------------------------------------------------
Q 010762 281 GHCQVLLFSAT--------------------------------------------------------------------- 291 (502)
Q Consensus 281 ~~~q~v~~SAT--------------------------------------------------------------------- 291 (502)
.....+++|+|
T Consensus 543 ~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlK 622 (1157)
T KOG0386|consen 543 RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLK 622 (1157)
T ss_pred cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhh
Confidence 11223444554
Q ss_pred ------CChhHHHHHHHHhcC-----------Cceeeecc-----ccccccc--------ceEEEE--------------
Q 010762 292 ------FNETVKNFVTRIVKD-----------YNQLFVKK-----EELSLES--------VKQYKV-------------- 327 (502)
Q Consensus 292 ------~~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~~~--------~~~~~~-------------- 327 (502)
+|+.++..++.-+.. ...+.... ....+.+ ..+-+.
T Consensus 623 keVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 623 KEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 122221111111100 00000000 0000000 000000
Q ss_pred -ecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC---eE
Q 010762 328 -YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT---QV 403 (502)
Q Consensus 328 -~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~---~i 403 (502)
.+-....|...+-..+.++...++++|.||....-...+..+|.-.++....+.|.....+|...++.|..... .+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 00112356666666667777789999999999999999999999999999999999999999999999986543 46
Q ss_pred EEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEee
Q 010762 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
|..|...+.|+|+..++.||.||.-| ++....|+--|+.|.|+...+-++..
T Consensus 783 llstragglglNlQtadtviifdsdw--------np~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDW--------NPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCC--------CchhHHHHHHHHHHhhchhheeeeee
Confidence 88999999999999999999999996 45669999999999998766655544
No 149
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.66 E-value=1.1e-13 Score=133.32 Aligned_cols=302 Identities=18% Similarity=0.241 Sum_probs=207.0
Q ss_pred CCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc-Cc------eeeEe-------------------------ecCCCCCc
Q 010762 166 DPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-GI------TSECA-------------------------VPTDSTNY 213 (502)
Q Consensus 166 ~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~------~~~~~-------------------------~~~~~~~~ 213 (502)
+++-..|++|||||+|..|..+.+.+.++.... .+ .-... ..|.....
T Consensus 32 DQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 32 DQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred ccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 344567899999999999999999888776541 10 00000 00000000
Q ss_pred ----------ccccCCCCCCCeEEEeCchHHHHHHHc------CccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhh
Q 010762 214 ----------VPISKRPPVTAQVVIGTPGTIKKWMSA------KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277 (502)
Q Consensus 214 ----------~~~~~~~~~~~~Ilv~Tp~~l~~~l~~------~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~ 277 (502)
..........+|||||+|=.|...+.. ..-.++++.++|+|.||.|+- .-++.+..+++.+.
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M--QNW~Hv~~v~~~lN 189 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM--QNWEHVLHVFEHLN 189 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH--hhHHHHHHHHHHhc
Confidence 000001223679999999999888874 222488999999999999885 45777888888776
Q ss_pred hcCC---------------------CeeEEEEeecCChhHHHHHHHHhcCCcee-eecc--c-----ccccccceEEEEe
Q 010762 278 RSSG---------------------HCQVLLFSATFNETVKNFVTRIVKDYNQL-FVKK--E-----ELSLESVKQYKVY 328 (502)
Q Consensus 278 ~~~~---------------------~~q~v~~SAT~~~~~~~~~~~~~~~~~~~-~~~~--~-----~~~~~~~~~~~~~ 328 (502)
..+. -+|+|++|+...+++..+....+.+.... .... . ......+.|.+..
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r 269 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQR 269 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEE
Confidence 5442 16999999999999999888866654322 2111 1 1223345565554
Q ss_pred cCC------hHHHHHHHHHHHHHh---cccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC
Q 010762 329 CPD------ELAKVMVIRDRIFEL---GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399 (502)
Q Consensus 329 ~~~------~~~k~~~l~~~l~~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~ 399 (502)
.+. ...+.......+.-. ....+++|||++|.-.--++-++|+..++..+.+|--.++.+..++-..|..|
T Consensus 270 ~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G 349 (442)
T PF06862_consen 270 FDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG 349 (442)
T ss_pred ecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC
Confidence 322 223333333322222 23668999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCccc--cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC------CcceEEEEeeCCccHHHH
Q 010762 400 LTQVLISTDVLA--RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG------RKGVVFNLLMDGDDMIIM 471 (502)
Q Consensus 400 ~~~iLv~T~~~~--~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g------~~g~~~~~~~~~~~~~~~ 471 (502)
+..+|+.|.-+. +-..+.++++||.|++| ..+.-|-..++-.+... ....|.++++.-+.
T Consensus 350 ~~~iLL~TER~HFfrRy~irGi~~viFY~~P--------~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~---- 417 (442)
T PF06862_consen 350 RKPILLYTERFHFFRRYRIRGIRHVIFYGPP--------ENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA---- 417 (442)
T ss_pred CceEEEEEhHHhhhhhceecCCcEEEEECCC--------CChhHHHHHHhhhcccccccccccCceEEEEecHhHH----
Confidence 999999997654 66778899999999999 56666766665544433 25788888874432
Q ss_pred HHHHHHhCCc
Q 010762 472 EKIERYFDIK 481 (502)
Q Consensus 472 ~~i~~~l~~~ 481 (502)
-.+++..|.+
T Consensus 418 ~~LErIVGt~ 427 (442)
T PF06862_consen 418 LRLERIVGTE 427 (442)
T ss_pred HHHHHHhCHH
Confidence 3456655543
No 150
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=1e-15 Score=135.12 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=101.0
Q ss_pred CCcHHHHhhhhhhcCC-----CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 123 KPSKIQAISLPMILTP-----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~-----~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
+|+++|.+++..+... ..+.+++.+|||||||.+++..+..... +++|+||+..|+.|+...+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 3789999999998841 1389999999999999997765555543 8999999999999999999666543
Q ss_pred cCceeeEee---------cCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc-----------cCCCceEEEEEeCch
Q 010762 198 TGITSECAV---------PTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-----------LGFSRLKILVYDEAD 257 (502)
Q Consensus 198 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-----------~~~~~~~~lVlDEah 257 (502)
......... ..................+++++|...|........ ......++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 221111100 000000001111223356899999999987765421 234567899999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~ 293 (502)
++..... +..++. .....+++||||+.
T Consensus 157 ~~~~~~~----~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS----YREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH----HHHHHH-----SSCCEEEEEESS-S
T ss_pred hcCCHHH----HHHHHc-----CCCCeEEEEEeCcc
Confidence 8776311 334444 33567899999975
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.59 E-value=4e-15 Score=112.26 Aligned_cols=81 Identities=43% Similarity=0.748 Sum_probs=76.2
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhh
Q 010762 365 ALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLH 444 (502)
Q Consensus 365 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~q 444 (502)
.++..|...++.+..+||++++.+|..+++.|+.+...+||+|+++++|+|+|.+++||.+++| .+...|.|
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~--------~~~~~~~Q 73 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLP--------WSPASYIQ 73 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCC--------CCHHHHHH
Confidence 4677888889999999999999999999999999999999999999999999999999999999 67889999
Q ss_pred hhcccccCC
Q 010762 445 RIGRAGRFG 453 (502)
Q Consensus 445 r~GR~~R~g 453 (502)
++||++|.|
T Consensus 74 ~~gR~~R~g 82 (82)
T smart00490 74 RIGRAGRAG 82 (82)
T ss_pred hhcccccCC
Confidence 999999975
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=5.3e-13 Score=140.97 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCCCCCcHHHHhhhhhhcCC--CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 119 MKFQKPSKIQAISLPMILTP--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~--~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
|.|..++|.|.+.+..+... .+.++++.+|||+|||++.+.|++..........++++.+.|..-..|+.+++++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 67887899999877665431 13899999999999999999999987654445578999999999999999999884
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.58 E-value=1.7e-12 Score=122.33 Aligned_cols=125 Identities=18% Similarity=0.318 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhcc--cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC-CeE-EEEcCc
Q 010762 334 AKVMVIRDRIFELGE--KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL-TQV-LISTDV 409 (502)
Q Consensus 334 ~k~~~l~~~l~~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~-~~i-Lv~T~~ 409 (502)
.|+..+.+.+....+ ...+.|||.+.......+.=.|...|+.|+.+.|+|++..|...++.|.+.- +.| |++-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 355555554444332 3457899999999999999999999999999999999999999999998764 554 566677
Q ss_pred cccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCC--cceEEEEeeCCc
Q 010762 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGD 466 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~--~g~~~~~~~~~~ 466 (502)
.+.-||+..+++|+.+|+=|+ +..--|.-.|..|.|+ +-.++.|+.+..
T Consensus 700 GGVALNLteASqVFmmDPWWN--------paVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWN--------PAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred CceEeeechhceeEeeccccc--------HHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 888899999999999997653 4445677777777775 567888887544
No 154
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.58 E-value=1.9e-13 Score=133.67 Aligned_cols=124 Identities=17% Similarity=0.306 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCe-EEEEcCccc
Q 010762 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ-VLISTDVLA 411 (502)
Q Consensus 333 ~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~-iLv~T~~~~ 411 (502)
..|+..+-.+|.++...++++|+|++..+....+..+|...++....+.|.....+|..++..|...++- +|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 4566666677777788899999999999999999999999999999999999999999999999987655 589999999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc--eEEEEeeC
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMD 464 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g--~~~~~~~~ 464 (502)
-|||+..++.||+||..|. +..-.|...|+.|.|+.. .++.+++-
T Consensus 1107 LGINLTAADTViFYdSDWN--------PT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWN--------PTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred ccccccccceEEEecCCCC--------cchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999975 444789999999999754 56666653
No 155
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.57 E-value=1e-13 Score=139.25 Aligned_cols=118 Identities=22% Similarity=0.271 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----------------------CCcEEEecCCCCHHHHHHH
Q 010762 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----------------------GYEVTTIMGATIQEERDKI 392 (502)
Q Consensus 335 k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------~~~~~~l~~~~~~~~r~~~ 392 (502)
|+..|++.|...-.-+.+.|||.+|......+..+|... |...+.|.|......|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 455566655555556889999999999999999888642 5567889999999999999
Q ss_pred HHHHHcCC----CeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEE
Q 010762 393 VKEFKDGL----TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460 (502)
Q Consensus 393 ~~~f~~~~----~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~ 460 (502)
.+.|++.. ...||+|.+.+-|+|+-+++.||.||..|++++ -+|.+=|+.|.|+..-||+
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSy--------DtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSY--------DTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCcc--------chHHHHHHHhhcCcCceee
Confidence 99998643 347999999999999999999999999986544 7899999999998666553
No 156
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=9.8e-14 Score=143.42 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 331 ~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
....|...+...+......+.|+||-+.|++..+.|+++|...|++.-+|++.....+-..+-+.=+ .-.|-|||+++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCc
Confidence 4567888888888888889999999999999999999999999999999988765444444433222 23589999999
Q ss_pred ccCCCCC--------CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 411 ARGFDQQ--------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 411 ~~Gldi~--------~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
+||-||. +==|||--..+ .|...-.|-.||+||-|.+|.+..|++-.|+
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerh--------eSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERH--------ESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCC--------CcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999997 33456655555 7888889999999999999999988886655
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=3.1e-13 Score=140.43 Aligned_cols=316 Identities=14% Similarity=0.079 Sum_probs=178.9
Q ss_pred CCcHHHHhhhhhhcC----C--CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 123 KPSKIQAISLPMILT----P--PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~----~--~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
..+.||-.|+..+.. . .+--++-.|.||+|||++ =.=|+..+.....+.+..|-.-.|.|..|+-..+++-.+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 356789999987754 1 124577789999999998 444556666666777777777778888887777766543
Q ss_pred ccCceeeEeecCC--------------------CCCccc------------ccC-----------------CCCCCCeEE
Q 010762 197 HTGITSECAVPTD--------------------STNYVP------------ISK-----------------RPPVTAQVV 227 (502)
Q Consensus 197 ~~~~~~~~~~~~~--------------------~~~~~~------------~~~-----------------~~~~~~~Il 227 (502)
...-...+++|+. +..... ... ...-...|+
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 3222222222211 000000 000 001135799
Q ss_pred EeCchHHHHHHHcC---ccCCC----ceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHH
Q 010762 228 IGTPGTIKKWMSAK---KLGFS----RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 300 (502)
Q Consensus 228 v~Tp~~l~~~l~~~---~~~~~----~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~ 300 (502)
|||++.++...... ...+. .-+.|||||+|-+-.. ....+..++..+... ...++++|||+|+.+...+
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~--~~~~L~rlL~w~~~l--G~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE--DLPALLRLVQLAGLL--GSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH--HHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHH
Confidence 99999998776321 11111 1257999999965432 112233333322222 4679999999998876644
Q ss_pred HHHh-----------cCC---cee---eeccccccccc--------------------------c--eEEEEecCCh---
Q 010762 301 TRIV-----------KDY---NQL---FVKKEELSLES--------------------------V--KQYKVYCPDE--- 332 (502)
Q Consensus 301 ~~~~-----------~~~---~~~---~~~~~~~~~~~--------------------------~--~~~~~~~~~~--- 332 (502)
.... ..+ ..+ .+......... . .-..+.++..
T Consensus 643 ~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~ 722 (1110)
T TIGR02562 643 FRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRE 722 (1110)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccc
Confidence 3322 111 000 11110000000 0 0111122211
Q ss_pred -HHHHHHHHHHH-------HHhc----c-cCCc---EEEEcCChhhHHHHHHHHHhC------CCcEEEecCCCCHHHHH
Q 010762 333 -LAKVMVIRDRI-------FELG----E-KMGQ---TIIFVRTKNSASALHKALKDF------GYEVTTIMGATIQEERD 390 (502)
Q Consensus 333 -~~k~~~l~~~l-------~~~~----~-~~~~---~lVF~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~ 390 (502)
......+...+ .... . .+++ .||-+++++.+-.++..|-.. .+.++++|+..+...|.
T Consensus 723 ~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs 802 (1110)
T TIGR02562 723 NESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRS 802 (1110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHH
Confidence 11111111111 1111 1 1122 378888888888888887654 34588999999877777
Q ss_pred HHHHHH----------------------Hc----CCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhh
Q 010762 391 KIVKEF----------------------KD----GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLH 444 (502)
Q Consensus 391 ~~~~~f----------------------~~----~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~q 444 (502)
.+.++. .+ +...|+|+|.+++.|+|+ +.+++|-- | .++...+|
T Consensus 803 ~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~--------~~~~sliQ 871 (1110)
T TIGR02562 803 YIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD--P--------SSMRSIIQ 871 (1110)
T ss_pred HHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec--c--------CcHHHHHH
Confidence 655442 11 356899999999999999 67777743 2 45888999
Q ss_pred hhcccccCCC
Q 010762 445 RIGRAGRFGR 454 (502)
Q Consensus 445 r~GR~~R~g~ 454 (502)
|+||+.|.|.
T Consensus 872 ~aGR~~R~~~ 881 (1110)
T TIGR02562 872 LAGRVNRHRL 881 (1110)
T ss_pred Hhhccccccc
Confidence 9999999874
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.52 E-value=2.7e-12 Score=130.30 Aligned_cols=295 Identities=16% Similarity=0.185 Sum_probs=184.1
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
.-.+|.||+|||||.+..-++-..+. ....++|+|.-++.|+.++...++..+-. ++. .+...... ...
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~-----~i~ 118 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY-----IID 118 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc-----ccc
Confidence 56899999999999985555544433 24558999999999999999988765321 211 11111111 011
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHH------HHHHHHHHhhhcCCCeeEEEEeecCCh
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRD------DSLRIMKDIERSSGHCQVLLFSATFNE 294 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~------~~~~i~~~l~~~~~~~q~v~~SAT~~~ 294 (502)
....+-+++..++|.++.. -.+.++++|||||+-..+.. -|.. .+..++..+-+. ...+|++-||+..
T Consensus 119 ~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLND 192 (824)
T ss_pred ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCH
Confidence 1124677888888876542 23667999999999987763 2222 222333333222 4478999999999
Q ss_pred hHHHHHHHHhcCCceeeecccccccccceEEEEecCC----------------------------------hHHHHHHHH
Q 010762 295 TVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD----------------------------------ELAKVMVIR 340 (502)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~k~~~l~ 340 (502)
..-+++..+......-.+................++. .........
T Consensus 193 ~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 193 QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 9999988865433222221111111000000000000 000011222
Q ss_pred HHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCC-
Q 010762 341 DRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV- 419 (502)
Q Consensus 341 ~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v- 419 (502)
..+...+..+.++.||+.|...++.+++.....+..+..++|..+..+. +. -++++|++-|.++..|+++...
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhh
Confidence 3345555678899999999999999999999999999999987765532 22 4678999999999999999743
Q ss_pred -CEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEee
Q 010762 420 -NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 420 -~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
+-|+-|=-|...+ .++.+..|++||+-... ....++++.
T Consensus 347 F~~~f~yvk~~~~g----pd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 347 FDSMFAYVKPMSYG----PDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred ceEEEEEecCCCCC----CcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 4455564443221 35666899999997664 455665654
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.46 E-value=2.9e-13 Score=139.11 Aligned_cols=294 Identities=11% Similarity=0.017 Sum_probs=161.0
Q ss_pred EEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCC--CcccccCCCC
Q 010762 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST--NYVPISKRPP 221 (502)
Q Consensus 144 lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 221 (502)
+..+-+|||||..|+-.+-..+. .+..+||++|...|+.|+.+.|+..++.. .+..++...+. .+..+.....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~---~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~--~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR---AGRGALVVVPDQRDVDRLEAALRALLGAG--DVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH---cCCeEEEEecchhhHHHHHHHHHHHcCCC--cEEEECCCCCHHHHHHHHHHHhC
Confidence 34444699999999887766653 46689999999999999999999877522 23333333222 2233444455
Q ss_pred CCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhc--ccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHH
Q 010762 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--EAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNF 299 (502)
Q Consensus 222 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~--~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~ 299 (502)
+...|+|+|-..+ ..-+.++++||+||=|.-.- ..+..-....+... +....+..+|+-|||.+-+....
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~-Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL-RAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH-HHHHcCCcEEEECCCCCHHHHHH
Confidence 6689999995433 23578999999999995432 11122112222211 11223678999999976443322
Q ss_pred HHHHhcCCceeeecccc--cccccceEEEEecCC--------h--HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHH
Q 010762 300 VTRIVKDYNQLFVKKEE--LSLESVKQYKVYCPD--------E--LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH 367 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~--~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~ 367 (502)
+. .+.+..+...... .....+.- +.... . ..-...+.+.+.+.++.+ ++|||.|.+-.+-.+.
T Consensus 311 ~~--~g~~~~~~~~~~~~~~~~P~v~~--vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 311 VE--SGWAHDLVAPRPVVRARAPRVRA--LGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred Hh--cCcceeeccccccccCCCCeEEE--EeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 21 1222211111111 11111111 11100 0 001123445566667677 9999999877655432
Q ss_pred -HHHHh------CCCcEEEecC-----------------------CC-------C------------------HHHHHHH
Q 010762 368 -KALKD------FGYEVTTIMG-----------------------AT-------I------------------QEERDKI 392 (502)
Q Consensus 368 -~~L~~------~~~~~~~l~~-----------------------~~-------~------------------~~~r~~~ 392 (502)
..... ++. .+.+|. +. . ..+++.+
T Consensus 386 C~~Cg~~~~C~~C~~-~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~ 464 (665)
T PRK14873 386 CARCRTPARCRHCTG-PLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQV 464 (665)
T ss_pred hhhCcCeeECCCCCC-ceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHH
Confidence 11110 000 000010 00 0 0134457
Q ss_pred HHHHHcCCCeEEEEcC----ccccCCCCCCCCEEEEecCCC--CCCCCC--CCCccchhhhhcccccCCCcceEEEEe
Q 010762 393 VKEFKDGLTQVLISTD----VLARGFDQQQVNLIVNYDPPV--KHGKHL--EPDCEVYLHRIGRAGRFGRKGVVFNLL 462 (502)
Q Consensus 393 ~~~f~~~~~~iLv~T~----~~~~Gldi~~v~~VI~~~~p~--~~~~~~--~~s~~~y~qr~GR~~R~g~~g~~~~~~ 462 (502)
++.|. ++.+|||+|. +++ ++++.|+..|.-. ...+.+ ......+.|-+||+||.+..|.+++..
T Consensus 465 l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 465 VDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred HHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 78886 5889999999 555 3677776655431 111111 112334578899999998899998764
No 160
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.45 E-value=3.9e-12 Score=124.79 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHh-cccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc--CCCeE-EEEcCc
Q 010762 334 AKVMVIRDRIFEL-GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD--GLTQV-LISTDV 409 (502)
Q Consensus 334 ~k~~~l~~~l~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~--~~~~i-Lv~T~~ 409 (502)
.|+...+..+... .....+++|..+=......+...|...|+....+||.....+|..+++.|.. |..+| |+.-..
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3444444444443 3355677776666666677888999999999999999999999999999973 33344 566677
Q ss_pred cccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcce--EEEEeeCC
Q 010762 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV--VFNLLMDG 465 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~--~~~~~~~~ 465 (502)
.+.|||+-+.+|+|..|+-|+ +.-=.|...|..|.|++.. .+.|+..+
T Consensus 809 GGVGLNL~GaNHlilvDlHWN--------PaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWN--------PALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred CcceeeecccceEEEEecccC--------HHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 889999999999999999975 4457799999999997654 34455543
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.42 E-value=2.3e-11 Score=130.88 Aligned_cols=300 Identities=17% Similarity=0.198 Sum_probs=164.2
Q ss_pred CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccC
Q 010762 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 139 ~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
.++..+|+.-+|||||++... +-..+......+.++||+.++.|-.|+.+.+..++....... ... +...+..
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~-~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~--s~~~Lk~ 344 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFK-LARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAE--STSELKE 344 (962)
T ss_pred cCCceEEEeecCCchHHHHHH-HHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----ccc--CHHHHHH
Confidence 346799999999999998433 434444447788999999999999999999999876644321 111 1111111
Q ss_pred CCC-CCCeEEEeCchHHHHHHHcCc-c-CCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChh
Q 010762 219 RPP-VTAQVVIGTPGTIKKWMSAKK-L-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNET 295 (502)
Q Consensus 219 ~~~-~~~~Ilv~Tp~~l~~~l~~~~-~-~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~ 295 (502)
.+. ....|+|||-+.|...+.... . .-.+==+||+||||+-- +......+-..+ ++...++||+|+--.
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ----~G~~~~~~~~~~----~~a~~~gFTGTPi~~ 416 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ----YGELAKLLKKAL----KKAIFIGFTGTPIFK 416 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc----ccHHHHHHHHHh----ccceEEEeeCCcccc
Confidence 111 134799999999988876641 1 11222368999999843 222222222222 246899999996422
Q ss_pred HHHH-HHHHhcCCceeeecccccccccc-eEEEEe---cC--C-----------------------hH------------
Q 010762 296 VKNF-VTRIVKDYNQLFVKKEELSLESV-KQYKVY---CP--D-----------------------EL------------ 333 (502)
Q Consensus 296 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~--~-----------------------~~------------ 333 (502)
-... ....++.+...+...+...-..+ ...|.. .. . ..
T Consensus 417 ~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 496 (962)
T COG0610 417 EDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAM 496 (962)
T ss_pred ccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhc
Confidence 1111 12333333333322211111000 000000 00 0 00
Q ss_pred ------HHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCC---------c--------------EEEecCCC
Q 010762 334 ------AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGY---------E--------------VTTIMGAT 384 (502)
Q Consensus 334 ------~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~---------~--------------~~~l~~~~ 384 (502)
.....+...+........++++.|.++..|..+++....... . ....|..
T Consensus 497 ~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~- 575 (962)
T COG0610 497 LAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK- 575 (962)
T ss_pred chHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-
Confidence 000011111112122346777777777755555544332100 0 0000111
Q ss_pred CHHHHHHHHHHH--HcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccC--C-C-cceE
Q 010762 385 IQEERDKIVKEF--KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF--G-R-KGVV 458 (502)
Q Consensus 385 ~~~~r~~~~~~f--~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~--g-~-~g~~ 458 (502)
....+.....+| .....++||.+|++-+|+|.|.++++. .|-|.... ..+|.+.|+.|. + + .|.+
T Consensus 576 ~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H--------~L~QAisRtNR~~~~~K~~G~I 646 (962)
T COG0610 576 LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYH--------NLIQAISRTNRVFPGKKKFGLI 646 (962)
T ss_pred HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccc--------hHHHHHHHhccCCCCCCCCcEE
Confidence 123344445553 355688999999999999999888877 77885433 389999999995 3 2 3555
Q ss_pred EEEee
Q 010762 459 FNLLM 463 (502)
Q Consensus 459 ~~~~~ 463 (502)
+.|+.
T Consensus 647 VDf~g 651 (962)
T COG0610 647 VDFRG 651 (962)
T ss_pred EECcc
Confidence 54443
No 162
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.1e-11 Score=116.10 Aligned_cols=336 Identities=17% Similarity=0.183 Sum_probs=214.9
Q ss_pred CCCcHHHHhhhhhhcCCCCccEEEECcC-CCcc--hhHhHHHHHhcc----------------------------CCCCC
Q 010762 122 QKPSKIQAISLPMILTPPYRNLIAQARN-GSGK--TTCFVLGMLSRV----------------------------DPNLK 170 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~T-GsGK--Tl~~l~~il~~l----------------------------~~~~~ 170 (502)
..+|+.|.+.+-.+.+- +|++..-.| +.|+ +-.|++-+++++ .+...
T Consensus 215 ~pltalQ~~L~~~m~~Y--rDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNY--RDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred CcchHHHHHHHHHHHhh--hhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 46899999998888776 888753222 2344 556888888776 11234
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhcccCc-eee-----EeecCCCC---Ccccc-------------------------
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKHTGI-TSE-----CAVPTDST---NYVPI------------------------- 216 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~-~~~-----~~~~~~~~---~~~~~------------------------- 216 (502)
.+++|||||+|+-|..+...+..+.....- ... -..+..+. ....-
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 678999999999999999988877322211 000 00000000 00000
Q ss_pred ------cCCCCCCCeEEEeCchHHHHHHHcCc------cCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC--
Q 010762 217 ------SKRPPVTAQVVIGTPGTIKKWMSAKK------LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-- 282 (502)
Q Consensus 217 ------~~~~~~~~~Ilv~Tp~~l~~~l~~~~------~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~-- 282 (502)
........||+||.|-.|.-++.+.. -.++.+.++|+|-||.|+. .-+..+..|+.++...+..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~--QNwEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM--QNWEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH--hhHHHHHHHHHHhhcCccccc
Confidence 00022257899999999888776321 1377889999999999986 3466677777777654432
Q ss_pred -------------------eeEEEEeecCChhHHHHHHHHhcCCceeeeccccccccc-------ceEEE--EecCC---
Q 010762 283 -------------------CQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLES-------VKQYK--VYCPD--- 331 (502)
Q Consensus 283 -------------------~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~--- 331 (502)
+|+++||+--.+....++...+.+.........-..... +.|.+ +.+..
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~ 530 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIE 530 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCccc
Confidence 488888888777777777777665533222111111111 11111 11111
Q ss_pred -hHHHHHHHHHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC
Q 010762 332 -ELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 408 (502)
Q Consensus 332 -~~~k~~~l~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~ 408 (502)
...........|.-.. .....+|||.++.-.--++-.+|++.++....+|--.++..-.++-+.|-.|...+|+-|.
T Consensus 531 ~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTE 610 (698)
T KOG2340|consen 531 TPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTE 610 (698)
T ss_pred CchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEeh
Confidence 1222333333232221 1245689999999999999999999888888888777777777888889999999999998
Q ss_pred ccc--cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC----CcceEEEEeeCCc
Q 010762 409 VLA--RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG----RKGVVFNLLMDGD 466 (502)
Q Consensus 409 ~~~--~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g----~~g~~~~~~~~~~ 466 (502)
-+. |-.++.+|+.||.|.+|..+.- .++++.+.+|+.-.| ....|.++|+.-+
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~F-----YsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHF-----YSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHH-----HHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 754 7789999999999999944322 234577777765544 2356777877543
No 163
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.35 E-value=2.4e-11 Score=133.68 Aligned_cols=125 Identities=23% Similarity=0.359 Sum_probs=105.3
Q ss_pred HHHHHHHHHH-HHhcccCC--cEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC--CCeEEEEcC
Q 010762 334 AKVMVIRDRI-FELGEKMG--QTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG--LTQVLISTD 408 (502)
Q Consensus 334 ~k~~~l~~~l-~~~~~~~~--~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~--~~~iLv~T~ 408 (502)
.|...+...+ ......+. +++||++.......+...|...++..+.++|.++...|...++.|..+ ...+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666655 45555666 999999999999999999999999999999999999999999999986 456678889
Q ss_pred ccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc--eEEEEeeCCc
Q 010762 409 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGD 466 (502)
Q Consensus 409 ~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g--~~~~~~~~~~ 466 (502)
+++.|+|+...++||+||+.| ++....|...|+.|.|+.. .++.+++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~w--------np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWW--------NPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEecccc--------ChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 999999999999999999996 5667999999999998765 4556666443
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.34 E-value=5.7e-12 Score=101.24 Aligned_cols=136 Identities=14% Similarity=0.200 Sum_probs=81.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+--++-..+|+|||.-.+.-++.... ..+.++|||.|||.++..+.+.++... +........ ...
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i--~~~~rvLvL~PTRvva~em~~aL~~~~----~~~~t~~~~---------~~~ 69 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAI--KRRLRVLVLAPTRVVAEEMYEALKGLP----VRFHTNARM---------RTH 69 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHH--HTT--EEEEESSHHHHHHHHHHTTTSS----EEEESTTSS------------
T ss_pred ceeEEecCCCCCCcccccHHHHHHHH--HccCeEEEecccHHHHHHHHHHHhcCC----cccCceeee---------ccc
Confidence 66788999999999976655554322 245689999999999999988876442 221111000 112
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
..+.-|-|+|+..+.+.+.+ .....++++||+||||..-.. .-.....+..+... ....+|++|||+|...
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~---sIA~rg~l~~~~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPT---SIAARGYLRELAES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHH---HHHHHHHHHHHHHT-TS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHH---HHhhheeHHHhhhc-cCeeEEEEeCCCCCCC
Confidence 23456899999999888766 555789999999999964321 11122233334332 2467999999998754
No 165
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.25 E-value=3e-11 Score=121.53 Aligned_cols=310 Identities=19% Similarity=0.270 Sum_probs=188.0
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCC--eEEEecCcHHHHHHHHHHHH-HhhcccCceeeEeecCCCCCcccc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP--QALCICPTRELAIQNLEVLR-KMGKHTGITSECAVPTDSTNYVPI 216 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~--~~lil~Pt~~La~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (502)
++-+++.+.||.|||..+.-.+|..+..+..+. .+.+.-|+|..++.+.+.+. .-....+-.+.+.....+..
T Consensus 393 n~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~---- 468 (1282)
T KOG0921|consen 393 NRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSAT---- 468 (1282)
T ss_pred CceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccc----
Confidence 378999999999999999999998887655433 45666699998888887654 33333222222211111111
Q ss_pred cCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 217 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
...---|+.||-+-+++.+.+. +..+.++++||.|...-.. +-+..+++.+........++++|||+..+.
T Consensus 469 ---prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~---dfll~~lr~m~~ty~dl~v~lmsatIdTd~ 539 (1282)
T KOG0921|consen 469 ---PRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT---DFVLIVLREMISTYRDLRVVLMSATIDTDL 539 (1282)
T ss_pred ---cccccceeeeccchhhhhhhhc---ccccccccchhhhhhccch---HHHHHHHHhhhccchhhhhhhhhcccchhh
Confidence 1111359999999999988763 5567889999999765432 234444555544444556666777654322
Q ss_pred --------------------HHHHHHHhcCC-ceeeeccc---------cc-cccc--ceEEEEecCCh-----------
Q 010762 297 --------------------KNFVTRIVKDY-NQLFVKKE---------EL-SLES--VKQYKVYCPDE----------- 332 (502)
Q Consensus 297 --------------------~~~~~~~~~~~-~~~~~~~~---------~~-~~~~--~~~~~~~~~~~----------- 332 (502)
..++...+..+ ..+..... +. .... -...-..+.+.
T Consensus 540 f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~ 619 (1282)
T KOG0921|consen 540 FTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSR 619 (1282)
T ss_pred hhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhc
Confidence 11111111111 00000000 00 0000 00001111100
Q ss_pred ---HHHHHHHHHHHHH-h--cccCCcEEEEcCChhhHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHHcC
Q 010762 333 ---LAKVMVIRDRIFE-L--GEKMGQTIIFVRTKNSASALHKALKDF-------GYEVTTIMGATIQEERDKIVKEFKDG 399 (502)
Q Consensus 333 ---~~k~~~l~~~l~~-~--~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~~f~~~ 399 (502)
......+.+.+.. . ..-.+-++||.+.-...-.|...|... .+.+..+|+.....+..++.+....|
T Consensus 620 ~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g 699 (1282)
T KOG0921|consen 620 LSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG 699 (1282)
T ss_pred chhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc
Confidence 0001111121221 1 113467899999999988888887654 35788999999989999999999999
Q ss_pred CCeEEEEcCccccCCCCCCCCEEEEecCCCCCCC----------CCCCCccchhhhhcccccCCCcceEEEEee
Q 010762 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK----------HLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 400 ~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~----------~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
..++++.|.++...+.+.++..||..+.-..... ..+.|....+||.||+||. ++|.|..+++
T Consensus 700 v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 700 VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 9999999999999999998888876332210000 1235666679999999998 6899988875
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.21 E-value=8.8e-11 Score=120.21 Aligned_cols=334 Identities=16% Similarity=0.168 Sum_probs=197.0
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
+|+. |+.+|...--.+..| -+.-+.||-|||++..+|+.-.. ..+..+.+++..--||.--.+++..+...+
T Consensus 77 lg~~-~~dVQliG~i~lh~g----~iaEM~TGEGKTL~atlp~ylna---L~gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 77 LGMR-HFDVQLLGGIVLHLG----DIAEMRTGEGKTLVATLPAYLNA---LAGKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred cCCC-hhhHHHhhhhhhcCC----ceeeeecCCchHHHHHHHHHHHh---cCCCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 4555 667777655544444 68899999999999888875332 345568888888889999999999999999
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcC------ccCCCceEEEEEeCchhhhcc--------c
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE--------A 263 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~lVlDEah~l~~~--------~ 263 (502)
|+++.+...+.... .+.....|||.++|...| .+.++.+ ......+.+-|+||+|.++-+ .
T Consensus 149 GlsvG~~~~~m~~~----ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 149 GLSVGVILAGMSPE----EKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred CCceeeccCCCChH----HHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeee
Confidence 99888877666333 233444689999998766 2222221 122446788999999975421 1
Q ss_pred C---C----HHHHHHHHHHhhhcC-----CCeeEEEEeec--------------CC-hh------HHHHH--HHHhcCCc
Q 010762 264 G---F----RDDSLRIMKDIERSS-----GHCQVLLFSAT--------------FN-ET------VKNFV--TRIVKDYN 308 (502)
Q Consensus 264 ~---~----~~~~~~i~~~l~~~~-----~~~q~v~~SAT--------------~~-~~------~~~~~--~~~~~~~~ 308 (502)
| . ...+..+...+.... ...+.+.++-. .. .. +...+ ..++..-.
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence 1 1 122222332222110 01112222211 00 00 00000 00000000
Q ss_pred eeee----------------------------------------------------------------------------
Q 010762 309 QLFV---------------------------------------------------------------------------- 312 (502)
Q Consensus 309 ~~~~---------------------------------------------------------------------------- 312 (502)
...+
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~i 384 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVI 384 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhc
Confidence 0000
Q ss_pred -------cccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 010762 313 -------KKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (502)
Q Consensus 313 -------~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (502)
.+...+................|...++..+......++|+||-+.+++..+.+++.|.+.|++...+...-.
T Consensus 385 Y~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h 464 (822)
T COG0653 385 YGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH 464 (822)
T ss_pred cCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH
Confidence 0000000011111122224567888888888888889999999999999999999999999999988888775
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCE---EEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEe
Q 010762 386 QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL---IVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 462 (502)
Q Consensus 386 ~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~---VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~ 462 (502)
..+-+ +-.+.-..--|-|||++++||-||.--.. |.-.+--.--+..+..|-.---|-.||+||.|.+|.+.-|+
T Consensus 465 ~~EA~--Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 465 AREAE--IIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred HHHHH--HHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 33333 33332222357899999999999873332 22111111111112234444568899999999999988666
Q ss_pred eCCc
Q 010762 463 MDGD 466 (502)
Q Consensus 463 ~~~~ 466 (502)
+-.+
T Consensus 543 SleD 546 (822)
T COG0653 543 SLED 546 (822)
T ss_pred hhHH
Confidence 6443
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.18 E-value=2.3e-10 Score=109.34 Aligned_cols=143 Identities=18% Similarity=0.141 Sum_probs=80.3
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCC---CCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNL---KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~---~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (502)
.+.++++.++|+|||+..+..+. .+.... ....+|||||. .+..||...+.++.......+....+.. .....
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~--~~~~~ 100 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDS--ERRRL 100 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSC--HHHHT
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccc--ccccc
Confidence 47899999999999998655443 222111 12259999999 7889999999999854344443333332 01111
Q ss_pred cCCCCCCCeEEEeCchHHHHHHHc---CccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC
Q 010762 217 SKRPPVTAQVVIGTPGTIKKWMSA---KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (502)
Q Consensus 217 ~~~~~~~~~Ilv~Tp~~l~~~l~~---~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~ 293 (502)
........+++|+|++.+...... ..+...++++||+||+|.+.+. .......+..+. ....+++|||+-
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~---~s~~~~~l~~l~----~~~~~lLSgTP~ 173 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK---DSKRYKALRKLR----ARYRWLLSGTPI 173 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT---TSHHHHHHHCCC----ECEEEEE-SS-S
T ss_pred cccccccceeeeccccccccccccccccccccccceeEEEecccccccc---cccccccccccc----cceEEeeccccc
Confidence 222334578999999999811000 1112234899999999999642 111222333333 346788999964
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.05 E-value=9.3e-10 Score=103.17 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=57.4
Q ss_pred CCCCCCcHHHHhhh----hhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCC---CCeEEEecCcHHHHHHHHHHH
Q 010762 119 MKFQKPSKIQAISL----PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK---APQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i----~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~---~~~~lil~Pt~~La~q~~~~~ 191 (502)
|.|. |+|.|.+.+ ..+..| .++++.||||+|||++|++|++..+..... +.+++|.++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 5565 699999944 444556 899999999999999999999876543222 348999999999999987777
Q ss_pred HHh
Q 010762 192 RKM 194 (502)
Q Consensus 192 ~~~ 194 (502)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.05 E-value=9.3e-10 Score=103.17 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=57.4
Q ss_pred CCCCCCcHHHHhhh----hhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCC---CCeEEEecCcHHHHHHHHHHH
Q 010762 119 MKFQKPSKIQAISL----PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK---APQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i----~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~---~~~~lil~Pt~~La~q~~~~~ 191 (502)
|.|. |+|.|.+.+ ..+..| .++++.||||+|||++|++|++..+..... +.+++|.++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 5565 699999944 444556 899999999999999999999876543222 348999999999999987777
Q ss_pred HHh
Q 010762 192 RKM 194 (502)
Q Consensus 192 ~~~ 194 (502)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 170
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.82 E-value=4.3e-07 Score=90.82 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=85.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCC------------------CcEEEecCCCCHHHHHHHHHHHHcCC---CeEEEEc
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFG------------------YEVTTIMGATIQEERDKIVKEFKDGL---TQVLIST 407 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~------------------~~~~~l~~~~~~~~r~~~~~~f~~~~---~~iLv~T 407 (502)
.+.++|||.++......+.+.|.... .....+.|..+...|++.+++|++.. +-+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 34688999999999999998887642 23457788889999999999998542 4578899
Q ss_pred CccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEE
Q 010762 408 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461 (502)
Q Consensus 408 ~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~ 461 (502)
...+-|+|+-..+.+|.||..|.+. .-.|.+-|+-|.|+...|+++
T Consensus 798 rag~lGinLIsanr~~ifda~wnpc--------hdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPC--------HDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred ccccccceeeccceEEEEEeecCcc--------ccchhhhhhhhhcCcCceeEE
Confidence 9999999999888999999997643 367999999999987766544
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.76 E-value=2.6e-08 Score=90.76 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=94.9
Q ss_pred hhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 117 ~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
+..|+. |+++|..++-.+..| -|+...||-|||++..+|+.-... .|..+-|++.+..||..=++++..+..
T Consensus 72 r~~g~~-p~~vQll~~l~L~~G----~laEm~TGEGKTli~~l~a~~~AL---~G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 72 RTLGLR-PYDVQLLGALALHKG----RLAEMKTGEGKTLIAALPAALNAL---QGKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp HHTS-----HHHHHHHHHHHTT----SEEEESTTSHHHHHHHHHHHHHHT---TSS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHcCCc-ccHHHHhhhhhcccc----eeEEecCCCCcHHHHHHHHHHHHH---hcCCcEEEeccHHHhhccHHHHHHHHH
Confidence 335655 999999999888766 399999999999998777765543 566799999999999999999999999
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHH-HHHHcCc------cCCCceEEEEEeCchhhhc
Q 010762 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIK-KWMSAKK------LGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~-~~l~~~~------~~~~~~~~lVlDEah~l~~ 261 (502)
.+|+++.+......... +.....++|+++|...|. ++++... .....+.++|+||+|.++-
T Consensus 144 ~LGlsv~~~~~~~~~~~----r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~Li 211 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEE----RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILI 211 (266)
T ss_dssp HTT--EEEEETTTEHHH----HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTT
T ss_pred HhhhccccCccccCHHH----HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEE
Confidence 99999988877654221 111224789999998874 3443321 1246789999999998764
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.74 E-value=3e-09 Score=109.47 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=99.9
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCcee
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (502)
...|+|.+.+-....-+ .++++.+|||+|||++|.+.++..+...+ +.+++++.|..+|+..-...+.+....-|+++
T Consensus 927 ~fn~~q~~if~~~y~td-~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ 1004 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTD-LNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDELPGIKV 1004 (1230)
T ss_pred ccCCccceEEEEEeecc-hhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhcccCCcee
Confidence 45678888887776543 78999999999999999999987776544 46899999999999888777766554446655
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc--CccCCCceEEEEEeCchhhhcc
Q 010762 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA--KKLGFSRLKILVYDEADHMLDE 262 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lVlDEah~l~~~ 262 (502)
.-..+........ ...++++|+||++...+.++ ..-.+.+++.+|+||.|.+.++
T Consensus 1005 ie~tgd~~pd~~~-----v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1005 IELTGDVTPDVKA-----VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EeccCccCCChhh-----eecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 5554443332211 22478999999998887764 3345788999999999998874
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.47 E-value=5.4e-06 Score=84.53 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=53.4
Q ss_pred CCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccC--CCcceEE----------EEeeCCc
Q 010762 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRF--GRKGVVF----------NLLMDGD 466 (502)
Q Consensus 399 ~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~--g~~g~~~----------~~~~~~~ 466 (502)
...+.|++-.++-+|+|=|+|=.++-.... .|..+=+|.+||.-|. +..|.-+ +++.+.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S--------~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~s 553 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSS--------GSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNES 553 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCC--------CcchHHHHHhccceeeeeccccceecccccccceEEEEeccc
Confidence 347899999999999999999999988766 6777889999999995 3445433 3555555
Q ss_pred cHHHHHHHHHHh
Q 010762 467 DMIIMEKIERYF 478 (502)
Q Consensus 467 ~~~~~~~i~~~l 478 (502)
+..+++.+.+.+
T Consensus 554 ek~Fv~~LqkEI 565 (985)
T COG3587 554 EKDFVKALQKEI 565 (985)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 174
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.47 E-value=1.8e-07 Score=80.37 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=74.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCC----CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC--ccccCCCCCC--CC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFG----YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD--VLARGFDQQQ--VN 420 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~----~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~--~~~~Gldi~~--v~ 420 (502)
..+++|||++|....+.+...+.... +.+..- ....+..+++.|+.+...||+++. .+++|+|+|+ ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 45899999999999999999998653 333333 245788899999999999999998 9999999995 77
Q ss_pred EEEEecCCCCCCCC----------------------CCCCccchhhhhcccccCCCcceEEEEee
Q 010762 421 LIVNYDPPVKHGKH----------------------LEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 421 ~VI~~~~p~~~~~~----------------------~~~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
.||..++|...... ++..+....|.+||+-|...+-.+++++.
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 89999999754421 01111223688999999876655555554
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.46 E-value=4.4e-06 Score=88.23 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=47.1
Q ss_pred CeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 224 AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 224 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
..|+++||..|..-+-.+.+.+..+..|||||||++... +.. .-|++..+...+..-+.+|||.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~--~~e--aFI~rlyr~~n~~gfIkafSds 71 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIES--SQE--AFILRLYRQKNKTGFIKAFSDN 71 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccc--ccH--HHHHHHHHHhCCCcceEEecCC
Confidence 579999999997777778889999999999999999863 222 2233334333335567888887
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.45 E-value=2.6e-07 Score=84.74 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=50.5
Q ss_pred CcHHHHhhhhhhcCCCCcc-EEEECcCCCcchhHhHHHHHhcc------CCCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 124 PSKIQAISLPMILTPPYRN-LIAQARNGSGKTTCFVLGMLSRV------DPNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~-~lv~a~TGsGKTl~~l~~il~~l------~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
+++-|..|+..++.. .. .+|+||+|+|||.+. ..++..+ .....+.++|+++|+...+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~--~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSS--NGITLIQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTS--SE-EEEE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcC--CCCEEEECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 568899999999987 66 999999999999653 3344444 1235667899999999999999998877
No 177
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.43 E-value=9.5e-07 Score=93.27 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=51.0
Q ss_pred CCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC--Ccc-------eEEEEeeCCccHHH
Q 010762 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKG-------VVFNLLMDGDDMII 470 (502)
Q Consensus 400 ~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g--~~g-------~~~~~~~~~~~~~~ 470 (502)
..+.+++-.++.+|+|.|++-.+..+... .|...-.|.+||.-|.- +.| ..++++.+.....+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~--------~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dF 572 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSS--------GSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDF 572 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccC--------CchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHH
Confidence 56899999999999999999988888765 56677799999999941 222 24556655554445
Q ss_pred HHHHHHHh
Q 010762 471 MEKIERYF 478 (502)
Q Consensus 471 ~~~i~~~l 478 (502)
...+.+.+
T Consensus 573 a~~LQ~EI 580 (986)
T PRK15483 573 ASKLVGEI 580 (986)
T ss_pred HHHHHHHH
Confidence 55444444
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.30 E-value=1e-06 Score=77.80 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=46.8
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (502)
++++-|..++..++.+..+-+++.|+.|+|||.+ +..+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--CCCeEEEECCcHHHHHHHHHh
Confidence 3678899999999865335688899999999986 4445444443 357899999999888876655
No 179
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.27 E-value=7e-06 Score=84.76 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=87.3
Q ss_pred CcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC-e-EEEEcCccccCCCCCCCCEEEEecCC
Q 010762 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT-Q-VLISTDVLARGFDQQQVNLIVNYDPP 428 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~-~-iLv~T~~~~~Gldi~~v~~VI~~~~p 428 (502)
.+++||++-..-+..+...|...++....+.|.|+...|.+.+..|..+.. . .+++..+...|+++..+.+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 499999999999999999999889999999999999999999999985542 3 46778889999999999999998876
Q ss_pred CCCCCCCCCCccchhhhhcccccCCCcceEE
Q 010762 429 VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVF 459 (502)
Q Consensus 429 ~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~ 459 (502)
.++..--|.+-|+.|-|+...+.
T Consensus 620 --------wnp~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 620 --------WNPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred --------cChHHHHHHHHHHHHhcccceee
Confidence 46777899999999999765443
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.21 E-value=3.1e-05 Score=71.06 Aligned_cols=165 Identities=13% Similarity=0.066 Sum_probs=98.5
Q ss_pred CcHHHHhhhhhhc-------CC-CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 124 PSKIQAISLPMIL-------TP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 124 p~~~Q~~~i~~il-------~~-~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
++..|.+++-... .+ .....++-..||.||--...--|+...... ..++|++..+..|-....+.++.++
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~r~vwvS~s~dL~~Da~RDl~DIG 115 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RKRAVWVSVSNDLKYDAERDLRDIG 115 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CCceEEEECChhhhhHHHHHHHHhC
Confidence 4566666663332 21 235788999999999887666666665433 2368999999999999999999887
Q ss_pred cccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc---cCC---------CceEEEEEeCchhhhccc
Q 010762 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK---LGF---------SRLKILVYDEADHMLDEA 263 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~---~~~---------~~~~~lVlDEah~l~~~~ 263 (502)
.. .+.+..+..... .......-.|+++|+..|...-.... ..+ ..=.+|||||||.+.+..
T Consensus 116 ~~-~i~v~~l~~~~~------~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~ 188 (303)
T PF13872_consen 116 AD-NIPVHPLNKFKY------GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLS 188 (303)
T ss_pred CC-cccceechhhcc------CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCC
Confidence 55 333222221110 01112235799999998876643211 010 122589999999987631
Q ss_pred CC---HHHHHHHHHHhhhcCCCeeEEEEeecCChhHH
Q 010762 264 GF---RDDSLRIMKDIERSSGHCQVLLFSATFNETVK 297 (502)
Q Consensus 264 ~~---~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~ 297 (502)
+- ....-.....+.+..++.+++.+|||--.+..
T Consensus 189 ~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 189 SGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPR 225 (303)
T ss_pred ccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCc
Confidence 10 01111222333333446679999999655443
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.19 E-value=6.9e-06 Score=79.92 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=64.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+-++|.|.+|||||+.. +-++..+.....+..++++|+...|...+...+......
T Consensus 2 ~v~~I~G~aGTGKTvla-~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------- 57 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLA-LNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------- 57 (352)
T ss_pred eEEEEEecCCcCHHHHH-HHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc-----------------------
Confidence 46899999999999984 444444433345668999999999998888777653200
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhc
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~ 261 (502)
......+..+..+...+.........+++||+||||++..
T Consensus 58 -~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 -KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0012334455555443332233467889999999999987
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.12 E-value=2.5e-06 Score=74.72 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=41.9
Q ss_pred CCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
.-.++-|..++..++.. .-+++.||.|||||+.++..+++.+.. ..-.+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~--~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNN--DLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH---SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCC
Confidence 34678899999999966 899999999999999998888888765 445578888887653
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.98 E-value=3.3e-05 Score=68.25 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=96.1
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCC-CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
.+|+....+..++=.+. .++. .+|.|......+.+. .+.+.+.+.-+|.|||.+ ++|++..+...+. ..+.+++
T Consensus 3 ~~w~p~~~P~wLl~E~e--~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~-~LvrviV 77 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE--SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS-RLVRVIV 77 (229)
T ss_pred CCCCchhChHHHHHHHH--cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC-cEEEEEc
Confidence 35677777777777664 3444 789999988888763 247999999999999998 7788877654433 3567777
Q ss_pred CcHHHHHHHHHHHHH-hhcccCceeeEeecCCCCCc--cc---c---cCCCCCCCeEEEeCchHHHHHHHc-------Cc
Q 010762 179 PTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNY--VP---I---SKRPPVTAQVVIGTPGTIKKWMSA-------KK 242 (502)
Q Consensus 179 Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~---~---~~~~~~~~~Ilv~Tp~~l~~~l~~-------~~ 242 (502)
|. +|..|....++. +++..+-.+..+--...... .. . .......-.|+++||+.++.+.-. ..
T Consensus 78 pk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~ 156 (229)
T PF12340_consen 78 PK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGK 156 (229)
T ss_pred CH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcC
Confidence 75 699999988865 44444433322211111110 00 0 001112346999999988655321 11
Q ss_pred c-----------CCCceEEEEEeCchhhhc
Q 010762 243 L-----------GFSRLKILVYDEADHMLD 261 (502)
Q Consensus 243 ~-----------~~~~~~~lVlDEah~l~~ 261 (502)
. .+.....=|+||+|.++.
T Consensus 157 ~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 157 PEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 022334468899987664
No 184
>PF13245 AAA_19: Part of AAA domain
Probab=97.98 E-value=2e-05 Score=57.43 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=37.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC-CCCCCCeEEEecCcHHHHHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~-~~~~~~~~lil~Pt~~La~q~~~~~ 191 (502)
+-++|.||+|||||...+-.+...+. ....+.++++++|++..+.++.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 55667999999999775544444442 1122678999999999999988877
No 185
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.97 E-value=4.4e-05 Score=78.68 Aligned_cols=141 Identities=20% Similarity=0.163 Sum_probs=83.7
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC--CCCCCeEEEecCcHHHHHHHHHHHHHhhcccCce
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--NLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~--~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (502)
..++|+.|+-..+.+ +-++|.|++|+|||.+. ..++..+.. .....+++++.||...|..+.+.+.......+..
T Consensus 153 ~~d~Qk~Av~~a~~~--~~~vItGgpGTGKTt~v-~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 153 EVDWQKVAAAVALTR--RISVISGGPGTGKTTTV-AKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CCHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 358999999999987 89999999999999873 223333221 1233578889999999888888765543322210
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC------ccCCCceEEEEEeCchhhhcccCCHHHHHHHHHH
Q 010762 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK------KLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~------~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~ 275 (502)
. . ... ....-..|-.+|+...... ..+...+++||+||+-++-- ..+..+++.
T Consensus 230 ------~---~---~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~-----~lm~~ll~a 288 (615)
T PRK10875 230 ------D---E---QKK----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL-----PMMARLIDA 288 (615)
T ss_pred ------h---h---hhh----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH-----HHHHHHHHh
Confidence 0 0 000 0011234444444322111 11233468999999986532 345666666
Q ss_pred hhhcCCCeeEEEEeec
Q 010762 276 IERSSGHCQVLLFSAT 291 (502)
Q Consensus 276 l~~~~~~~q~v~~SAT 291 (502)
++. ..++|++.=.
T Consensus 289 l~~---~~rlIlvGD~ 301 (615)
T PRK10875 289 LPP---HARVIFLGDR 301 (615)
T ss_pred ccc---CCEEEEecch
Confidence 654 5677766543
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.94 E-value=3.5e-05 Score=79.25 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=82.2
Q ss_pred cHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC---CCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCce
Q 010762 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD---PNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (502)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~---~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (502)
.++|+.|+..++.+ +-+++.|+.|+|||.+. ..++..+. ......++++.+||--.|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~--~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKS--NFSLITGGPGTGKTTTV-ARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhC--CeEEEEcCCCCCHHHHH-HHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 48999999999998 89999999999999862 23333222 11113579999999988888777665543222110
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc------CccCCCceEEEEEeCchhhhcccCCHHHHHHHHHH
Q 010762 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA------KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~------~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~ 275 (502)
.. ... ...+-..|-.+|+..... ..-+...+++||+|||-++.. ..+..+++.
T Consensus 224 ---------~~---~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~-----~l~~~ll~a 282 (586)
T TIGR01447 224 ---------EA---LIA----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL-----PLMAKLLKA 282 (586)
T ss_pred ---------hh---hhh----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-----HHHHHHHHh
Confidence 00 000 001223444444332211 011233578999999986543 335566666
Q ss_pred hhhcCCCeeEEEEee
Q 010762 276 IERSSGHCQVLLFSA 290 (502)
Q Consensus 276 l~~~~~~~q~v~~SA 290 (502)
++. ..++|++.=
T Consensus 283 l~~---~~rlIlvGD 294 (586)
T TIGR01447 283 LPP---NTKLILLGD 294 (586)
T ss_pred cCC---CCEEEEECC
Confidence 644 566666543
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.92 E-value=1.7e-05 Score=78.63 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
.|+..+..-|..|+.++|.. .-.+|+||+|+|||++..--+. ++... ....+|+++|+...+.|+++.+.+.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~r--plsLIQGPPGTGKTvtsa~IVy-hl~~~-~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQR--PLSLIQGPPGTGKTVTSATIVY-HLARQ-HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred CCchhhchHHHHHHHHHHcC--CceeeecCCCCCceehhHHHHH-HHHHh-cCCceEEEcccchhHHHHHHHHHhcC
Confidence 67888999999999999998 7889999999999998544343 43332 45689999999999999999887754
No 188
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.84 E-value=9.2e-05 Score=61.25 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=58.9
Q ss_pred ecCCCCHHHHHHHHHHHHcCC-CeEEEEcCccccCCCCCC--CCEEEEecCCCCCCCC-------------C--------
Q 010762 380 IMGATIQEERDKIVKEFKDGL-TQVLISTDVLARGFDQQQ--VNLIVNYDPPVKHGKH-------------L-------- 435 (502)
Q Consensus 380 l~~~~~~~~r~~~~~~f~~~~-~~iLv~T~~~~~Gldi~~--v~~VI~~~~p~~~~~~-------------~-------- 435 (502)
+.-+....+...+++.|+... ..||+++..+++|+|+|+ ++.||..++|+..... .
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 333455556788999998764 379999988999999996 6789999999754331 0
Q ss_pred --CCCccchhhhhcccccCCCcceEEEEee
Q 010762 436 --EPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 436 --~~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
+.......|.+||+-|...+-.+++++.
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1112334788999999876555555553
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.84 E-value=9.8e-05 Score=78.30 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=48.9
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (502)
.++ .+++-|+.|+..++.+ +-+++.|+.|+|||.+ +-.++..+........+++++||-..|..+.+
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~--~~~iitGgpGTGKTt~-l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQH--KVVILTGGPGTGKTTI-TRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhC--CeEEEECCCCCCHHHH-HHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 454 5899999999999877 8999999999999986 33444444322222468888999877765443
No 190
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.79 E-value=9.1e-05 Score=61.41 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCC---eEEEEcCc--cccCCCCCC--CCEEEEecCCCCCCCC-C----------------------C
Q 010762 387 EERDKIVKEFKDGLT---QVLISTDV--LARGFDQQQ--VNLIVNYDPPVKHGKH-L----------------------E 436 (502)
Q Consensus 387 ~~r~~~~~~f~~~~~---~iLv~T~~--~~~Gldi~~--v~~VI~~~~p~~~~~~-~----------------------~ 436 (502)
.+...+++.|+.... .||+++.. +++|+|+|+ ++.||..++|+..... . +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345788889987543 68888877 999999996 6789999999754431 0 1
Q ss_pred CCccchhhhhcccccCCCcceEEEEee
Q 010762 437 PDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 437 ~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
.......|.+||+-|...+-.+++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 112234799999999876655665654
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.76 E-value=4.2e-05 Score=75.50 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (502)
.+.+-|+.|+...+..+ .-.+++||+|+|||.+...-|.+.+. .+.++||..||.+.+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k-~l~~I~GPPGTGKT~TlvEiI~qlvk---~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNK-DLLIIHGPPGTGKTRTLVEIISQLVK---QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccC-CceEeeCCCCCCceeeHHHHHHHHHH---cCCeEEEEcCchHHHHHHHHHhc
Confidence 46788999999888763 56789999999999985555555543 34689999999999999888543
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.73 E-value=0.00014 Score=65.64 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=44.8
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHH
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~ 182 (502)
.++.-.+..|...+..+..+ ..+++.|++|+|||+..+...+..+... .-.+++|.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCC
Confidence 45666778899999988876 7999999999999998777777665332 2335555556643
No 193
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.71 E-value=5.1e-05 Score=70.55 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=54.3
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La 184 (502)
.+|+.--+-.|..|+..++...-.=+.+.++.|||||+.++.+.+........-.+++|.=|+..+-
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 4788888888999999999875556888999999999999998888876665666777777876554
No 194
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.00046 Score=68.17 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=71.7
Q ss_pred ECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH-HhhcccCceeeEeecCCCCCcccc--cCCCCC
Q 010762 146 QARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR-KMGKHTGITSECAVPTDSTNYVPI--SKRPPV 222 (502)
Q Consensus 146 ~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 222 (502)
.+.||||||++..-.|+..+..+.. ..|+.|.......-...-+. ......-.+-...+++........ -..-..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 5679999999866666666543322 35666655444443332221 111100000001111111111000 011233
Q ss_pred CCeEEEeCchHHHHHHHc---CccC---CCceEE-EEEeCchhhhcc--------cCCHHHHHHHHHHhhhcCCCeeEEE
Q 010762 223 TAQVVIGTPGTIKKWMSA---KKLG---FSRLKI-LVYDEADHMLDE--------AGFRDDSLRIMKDIERSSGHCQVLL 287 (502)
Q Consensus 223 ~~~Ilv~Tp~~l~~~l~~---~~~~---~~~~~~-lVlDEah~l~~~--------~~~~~~~~~i~~~l~~~~~~~q~v~ 287 (502)
+..|+++|.+.|...+.+ +.+. +.+..+ ++-||||++-.. ..-...+...+..-.+..+.--++.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 568999999998766644 2232 334444 567999997531 1111222233332223334556788
Q ss_pred EeecCCh
Q 010762 288 FSATFNE 294 (502)
Q Consensus 288 ~SAT~~~ 294 (502)
+|||.+.
T Consensus 161 f~at~~k 167 (812)
T COG3421 161 FSATIPK 167 (812)
T ss_pred hhhcCCc
Confidence 9999883
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.63 E-value=0.00016 Score=74.50 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=70.5
Q ss_pred CcEEEEcCChhhHHHHHHHHHhC-------CCcEEEecCCCCHHHHHHHHHHHHcC--------CCeEEEEcCccccCCC
Q 010762 351 GQTIIFVRTKNSASALHKALKDF-------GYEVTTIMGATIQEERDKIVKEFKDG--------LTQVLISTDVLARGFD 415 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~r~~~~~~f~~~--------~~~iLv~T~~~~~Gld 415 (502)
..+|||+++....+.+....... +.+-. +..=.+...-.+++.+|.++ ..-..||-.-.++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l-~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKL-VVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCc-eeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 35899999998777775544332 11111 11112334455556666432 2345677888999999
Q ss_pred CCC--CCEEEEecCCCCCCCC----------------------C-----CCCcc---chhhhhcccccCCCcceEEEEee
Q 010762 416 QQQ--VNLIVNYDPPVKHGKH----------------------L-----EPDCE---VYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 416 i~~--v~~VI~~~~p~~~~~~----------------------~-----~~s~~---~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
+.+ .+.||..++|+-+..+ + +.+.. ..-|.+||+.|.-++..++.|+.
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 984 6779999999765543 0 00111 13589999999877777776776
Q ss_pred C
Q 010762 464 D 464 (502)
Q Consensus 464 ~ 464 (502)
+
T Consensus 721 ~ 721 (945)
T KOG1132|consen 721 D 721 (945)
T ss_pred c
Confidence 4
No 196
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0013 Score=63.94 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=67.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC--CCCCCCeEEEec--CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD--PNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~--~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (502)
+.+++.||||+|||.+..--+ .++. ....+.++.+++ +.|.-+..+ ++.++...++.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv-------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPV-------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcce--------------
Confidence 789999999999998754322 2221 112334555444 434444433 445554444322
Q ss_pred cCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC-eeEEEEeecCCh
Q 010762 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH-CQVLLFSATFNE 294 (502)
Q Consensus 217 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~-~q~v~~SAT~~~ 294 (502)
..+.++..+...+.. +.++++|++|++.+...+ ...+.++...+....+. -.++++|||...
T Consensus 237 ---------~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~---~~~l~el~~~l~~~~~~~e~~LVlsat~~~ 299 (388)
T PRK12723 237 ---------KAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKD---FMKLAEMKELLNACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred ---------EeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccC---HHHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence 122245556555543 467899999999987532 11233443443332222 467899999763
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.50 E-value=0.0012 Score=70.37 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=46.1
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (502)
.+++-|+.|+..++.+. +-+++.|++|+|||.. +-.+...+.. .+.++++++||--.+..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~-~~~il~G~aGTGKTtl-l~~i~~~~~~--~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSG-DIAVVVGRAGTGKSTM-LKAAREAWEA--AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCC-CEEEEEecCCCCHHHH-HHHHHHHHHh--CCCeEEEEeCcHHHHHHHH
Confidence 48899999999998752 6789999999999986 3334433322 3567999999976665543
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.44 E-value=0.00021 Score=58.66 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=12.9
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.|++|+|||...
T Consensus 5 ~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLI 21 (131)
T ss_dssp --EEEEE-TTSSHHHHH
T ss_pred cccEEEcCCCCCHHHHH
Confidence 78999999999999974
No 199
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.43 E-value=0.00024 Score=68.21 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=53.2
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC-CCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-LKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~-~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
+|+-|..++.. .. ..++|.|..|||||.+.+.-+...+... ....++|++++|+..+..+...+......
T Consensus 1 l~~eQ~~~i~~-~~---~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS-TE---GPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS--S---SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CC---CCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 46789999987 43 6899999999999998665555554433 45668999999999999999988886544
No 200
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.26 E-value=0.0033 Score=68.74 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHH
Q 010762 106 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (502)
Q Consensus 106 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 185 (502)
++++..+..... .+ ..+++-|..++..+..+ .+-+++.|+.|+|||.+ +-++...+. ..+.+++.+.||-..+.
T Consensus 366 ~v~~~~l~a~~~-~~-~~Ls~eQ~~Av~~i~~~-~r~~~v~G~AGTGKTt~-l~~~~~~~e--~~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 366 GVREAVLAATFA-RH-ARLSDEQKTAIEHVAGP-ARIAAVVGRAGAGKTTM-MKAAREAWE--AAGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCHHHHHHHHh-cC-CCCCHHHHHHHHHHhcc-CCeEEEEeCCCCCHHHH-HHHHHHHHH--HcCCeEEEEcCcHHHHH
Confidence 345555555433 23 35899999999988654 37899999999999986 444444332 24568999999977665
Q ss_pred HHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCC
Q 010762 186 QNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGF 265 (502)
Q Consensus 186 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~ 265 (502)
.+.+. .++.. .|-.+|+.........+..-++||||||.++..
T Consensus 440 ~L~e~-------~Gi~a--------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~---- 482 (1102)
T PRK13826 440 GLEKE-------AGIQS--------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS---- 482 (1102)
T ss_pred HHHHh-------hCCCe--------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH----
Confidence 54331 12211 122222111111222355667999999996543
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 266 RDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
..+..+++..... ..++|++.=+
T Consensus 483 -~~m~~Ll~~~~~~--garvVLVGD~ 505 (1102)
T PRK13826 483 -RQMALFVEAVTRA--GAKLVLVGDP 505 (1102)
T ss_pred -HHHHHHHHHHHhc--CCEEEEECCH
Confidence 3355566655432 4566666544
No 201
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.25 E-value=3.7e-05 Score=78.68 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc---CCCeEEEEcCcc
Q 010762 334 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD---GLTQVLISTDVL 410 (502)
Q Consensus 334 ~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~---~~~~iLv~T~~~ 410 (502)
.|...|...+......+.|++||.+-....+.+..++...+ ....+.|......|..++.+|+. .....|.+|...
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 45555666666677789999999999999999999999888 88899999999999999999983 346789999887
Q ss_pred ccC
Q 010762 411 ARG 413 (502)
Q Consensus 411 ~~G 413 (502)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 655
No 202
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.24 E-value=0.0018 Score=70.34 Aligned_cols=125 Identities=15% Similarity=0.061 Sum_probs=75.8
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCcee
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (502)
.+++-|+.++..++.+. .-+++.|..|+|||.+ +-.+...+.. .+.+++.++||--.+..+.+ ..++.
T Consensus 346 ~Ls~eQr~Av~~il~s~-~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e-------~tGi~- 413 (988)
T PRK13889 346 VLSGEQADALAHVTDGR-DLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLEG-------GSGIA- 413 (988)
T ss_pred CCCHHHHHHHHHHhcCC-CeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHhh-------ccCcc-
Confidence 48999999999999863 4688999999999986 4444433322 35679999999766654332 11111
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC
Q 010762 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~ 282 (502)
-.|-.+|..-...+...+...++|||||+-++.. ..+..+++.... ..
T Consensus 414 -------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~-----~~m~~LL~~a~~--~g 461 (988)
T PRK13889 414 -------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT-----RQLERVLSHAAD--AG 461 (988)
T ss_pred -------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCH-----HHHHHHHHhhhh--CC
Confidence 1133333221112222356678999999996543 234555554432 24
Q ss_pred eeEEEEeec
Q 010762 283 CQVLLFSAT 291 (502)
Q Consensus 283 ~q~v~~SAT 291 (502)
.++|++.=+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 566666544
No 203
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.24 E-value=0.0017 Score=59.32 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
+.+|+++--...++..|.+ ++ .++...+.+..||+|+|||-++++..-+...
T Consensus 32 Pkt~de~~gQe~vV~~L~~-------------a~---~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKN-------------AL---LRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CCcHHhhcchHHHHHHHHH-------------HH---hhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4466666666666666654 11 1122368999999999999987766554433
No 204
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0015 Score=63.01 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=67.7
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+..+++.||||+|||.....-+........ ..++.+++ +...-.--.+.++.|+...++.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~----------------- 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLT-TDSYRIGGHEQLRIFGKILGVPV----------------- 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEe-cccccccHHHHHHHHHHHcCCce-----------------
Confidence 379999999999999974433322221111 12444443 21211112234454554444321
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc-CCCeeEEEEeecCChhH-H
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS-SGHCQVLLFSATFNETV-K 297 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~-~~~~q~v~~SAT~~~~~-~ 297 (502)
..+.+++.+...+.. +.+.++|+||.+-+.-. ...+...+..+... .+...++++|||..... .
T Consensus 198 ------~~~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 198 ------HAVKDGGDLQLALAE----LRNKHMVLIDTIGMSQR----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ------EecCCcccHHHHHHH----hcCCCEEEEcCCCCCcc----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 334455555554443 55678999999975432 22233344444322 22345788999976443 3
Q ss_pred HHHHHH
Q 010762 298 NFVTRI 303 (502)
Q Consensus 298 ~~~~~~ 303 (502)
+.+..+
T Consensus 264 evi~~f 269 (374)
T PRK14722 264 EVVQAY 269 (374)
T ss_pred HHHHHH
Confidence 344444
No 205
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.23 E-value=0.0012 Score=70.72 Aligned_cols=148 Identities=13% Similarity=0.134 Sum_probs=90.3
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCC---------------CCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeE
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDP---------------NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSEC 204 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~---------------~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~ 204 (502)
+++++.....|+|||..-+...+..+-. ....+..|||||. ++..||..++.+-.... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 4778999999999999866655543310 1123468999998 57799999998876554 44444
Q ss_pred eecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc--------------cCCC----ceE--EEEEeCchhhhcccC
Q 010762 205 AVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--------------LGFS----RLK--ILVYDEADHMLDEAG 264 (502)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--------------~~~~----~~~--~lVlDEah~l~~~~~ 264 (502)
..|......... .....+|||+||+..|..-+.... .... .+. -|++|||+++-..
T Consensus 452 Y~Girk~~~~~~--~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess-- 527 (1394)
T KOG0298|consen 452 YFGIRKTFWLSP--FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS-- 527 (1394)
T ss_pred EechhhhcccCc--hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--
Confidence 444333332222 333468999999999876553321 1111 111 2899999976542
Q ss_pred CHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHH
Q 010762 265 FRDDSLRIMKDIERSSGHCQVLLFSATFNETVKN 298 (502)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~ 298 (502)
.....+++..+.. ...-.+|+|+-..+.+
T Consensus 528 -sS~~a~M~~rL~~----in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 528 -SSAAAEMVRRLHA----INRWCVTGTPIQKIDD 556 (1394)
T ss_pred -HHHHHHHHHHhhh----hceeeecCCchhhhhh
Confidence 2334444444443 2457889996544433
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.22 E-value=0.0014 Score=64.03 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=42.1
Q ss_pred CcHHHHhhhhhh------cCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHH
Q 010762 124 PSKIQAISLPMI------LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (502)
Q Consensus 124 p~~~Q~~~i~~i------l~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (502)
+++-|+.++..+ ..+ ..+++.|+-|+|||.. +-.+.+.+.. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~--~~~fv~G~~GtGKs~l-~~~i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEG--LNFFVTGPAGTGKSFL-IKAIIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCC--cEEEEEcCCCCChhHH-HHHHHHHhcc--ccceEEEecchHHHHHhc
Confidence 456788887776 444 8999999999999986 2334444432 455789999998766554
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.17 E-value=0.00082 Score=59.08 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=57.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc---HHHHHHHHHHHHHhhcccCceeeEeecCCCCCccccc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT---RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt---~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (502)
.-.++.||+|+|||...+-. +.++.. .+.+++++-|. +.... .+....++..
T Consensus 3 ~i~litG~~GsGKTT~~l~~-~~~~~~--~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~--------------- 57 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQR-AYNYEE--RGMKVLVFKPAIDDRYGEG-------KVVSRIGLSR--------------- 57 (190)
T ss_pred EEEEEECCCCCHHHHHHHHH-HHHHHH--cCCeEEEEeccccccccCC-------cEecCCCCcc---------------
Confidence 56789999999999874443 333322 35577877663 21111 0111111100
Q ss_pred CCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 218 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
..+.+..+..+++.+.. .-..+++||+||+|.+.. +++..+++.+... -..+++++-
T Consensus 58 ------~~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~~-----~~v~~l~~~l~~~---g~~vi~tgl 114 (190)
T PRK04296 58 ------EAIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLDK-----EQVVQLAEVLDDL---GIPVICYGL 114 (190)
T ss_pred ------cceEeCChHHHHHHHHh---hCCCCCEEEEEccccCCH-----HHHHHHHHHHHHc---CCeEEEEec
Confidence 01233455566665544 234678999999986432 3345556655442 234555554
No 208
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.14 E-value=0.00079 Score=60.60 Aligned_cols=111 Identities=14% Similarity=0.240 Sum_probs=64.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
.-+++.|++|+|||-. +-++.+.+.....+.+++++... +........++.
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD--------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT---------------------------
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc---------------------------
Confidence 4589999999999984 44555444433345566665443 343333332221
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHH
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 297 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~ 297 (502)
.....+.+ .+..+++|+||++|.+.........+..++..+... +.++|+.|...|..+.
T Consensus 86 --------~~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 86 --------GEIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSELS 145 (219)
T ss_dssp --------TSHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTT
T ss_pred --------ccchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCcccc
Confidence 01122222 145678999999999876433455666666666543 4477777767665543
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.12 E-value=0.011 Score=56.95 Aligned_cols=131 Identities=21% Similarity=0.219 Sum_probs=74.6
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc-HHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT-RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
++.+.+.||||-|||.+..-.+........+...+||.+.| |.=| .++++.++..+++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA---~EQLk~Ya~im~vp----------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA---VEQLKTYADIMGVP----------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH---HHHHHHHHHHhCCc-----------------
Confidence 38999999999999987433222222222333345555554 3222 34556666555542
Q ss_pred CCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC-hhHH
Q 010762 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN-ETVK 297 (502)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~-~~~~ 297 (502)
=.++-+|.-|...+.. +.++++|.+|=+-+=..+ ...+.++-..+....+.--.+++|||.. .++.
T Consensus 263 ------~~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D---~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlk 329 (407)
T COG1419 263 ------LEVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYD---KEKIEELKELIDVSHSIEVYLVLSATTKYEDLK 329 (407)
T ss_pred ------eEEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccC---HHHHHHHHHHHhccccceEEEEEecCcchHHHH
Confidence 3666688888777664 777899999988752221 1122222223332223345688899976 3444
Q ss_pred HHHHHH
Q 010762 298 NFVTRI 303 (502)
Q Consensus 298 ~~~~~~ 303 (502)
..+..+
T Consensus 330 ei~~~f 335 (407)
T COG1419 330 EIIKQF 335 (407)
T ss_pred HHHHHh
Confidence 444443
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.08 E-value=0.0069 Score=50.45 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+.+++.|++|+|||..
T Consensus 20 ~~v~i~G~~G~GKT~l 35 (151)
T cd00009 20 KNLLLYGPPGTGKTTL 35 (151)
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999975
No 211
>PRK05642 DNA replication initiation factor; Validated
Probab=97.07 E-value=0.0018 Score=58.94 Aligned_cols=47 Identities=15% Similarity=0.360 Sum_probs=28.1
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE 294 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~ 294 (502)
+..+++||+|++|.+.........+..++..+... + ..++++++.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~--g-~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS--G-RRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc--C-CEEEEeCCCCH
Confidence 33457899999998764323344566666655432 2 34666666543
No 212
>PRK06893 DNA replication initiation factor; Validated
Probab=97.05 E-value=0.0022 Score=58.22 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChh
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNET 295 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~ 295 (502)
+.+.++||+||+|.+.........+..++..+... ..+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChH
Confidence 34567899999998864323333455555554331 33567777776543
No 213
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.05 E-value=0.013 Score=69.01 Aligned_cols=241 Identities=15% Similarity=0.162 Sum_probs=128.5
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCcee
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (502)
.+++-|+.++..++....+-.++.|+.|+|||.+ +-.++..+.. .+.++++++||-..+..+.+.....+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~A~Ti---- 501 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE--QGYEIQIITAGSLSAQELRQKIPRLASTF---- 501 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcchhhhH----
Confidence 4789999999999886558899999999999986 3444444332 46689999999887776665432111000
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC
Q 010762 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~ 282 (502)
.... .... ...-..|...|+ .....+..-++||||||-++.. ..+..++...... +
T Consensus 502 ~~~l-----------~~l~--~~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~-----~~~~~Ll~~a~~~--g 557 (1960)
T TIGR02760 502 ITWV-----------KNLF--NDDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN-----NELLKLIDKAEQH--N 557 (1960)
T ss_pred HHHH-----------Hhhc--ccccchhHHHhh----cccCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHhhc--C
Confidence 0000 0000 001112322332 1222345678999999996543 3355566554322 5
Q ss_pred eeEEEEeec--CC----hhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEE
Q 010762 283 CQVLLFSAT--FN----ETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIF 356 (502)
Q Consensus 283 ~q~v~~SAT--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF 356 (502)
.++|++.=+ ++ ......+... . ...+...........+ .+...........+...+.........++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~-g-v~t~~l~~i~rq~~~v---~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG-G-VTTYAWVDTKQQKASV---EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC-C-CcEEEeecccccCcce---eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 677777554 22 2222222221 1 1111111100001111 1222233344445555565655455679999
Q ss_pred cCChhhHHHHHHHHHh----CC------CcEEEec-CCCCHHHHHHHHHHHHcCC
Q 010762 357 VRTKNSASALHKALKD----FG------YEVTTIM-GATIQEERDKIVKEFKDGL 400 (502)
Q Consensus 357 ~~s~~~~~~l~~~L~~----~~------~~~~~l~-~~~~~~~r~~~~~~f~~~~ 400 (502)
..+......|....+. .| +....|. ..|++.++.. ...|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCCC
Confidence 9999888888777653 22 2233333 2566666663 35666654
No 214
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0023 Score=58.80 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.4
Q ss_pred ccEEEECcCCCcchhHhHH
Q 010762 141 RNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~ 159 (502)
.++++.||+|+|||.....
T Consensus 99 ~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ceEEEEeCCCCchHHHHHH
Confidence 8999999999999986443
No 215
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.01 E-value=0.0007 Score=61.25 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=57.8
Q ss_pred CCCeEEEecCcHHHHHHHHHHHHHhhcc-cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCce
Q 010762 170 KAPQALCICPTRELAIQNLEVLRKMGKH-TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (502)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 248 (502)
..|.+||||.+-.-|..+.+.++.+... .. +.-++.-.-.-............+|.||||+|+..++..+.+.+.++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~--v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCK--VAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCch--HHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4578999999888888888888876321 11 10111111000011111122357899999999999999999999999
Q ss_pred EEEEEeCchh
Q 010762 249 KILVYDEADH 258 (502)
Q Consensus 249 ~~lVlDEah~ 258 (502)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998764
No 216
>PRK08181 transposase; Validated
Probab=97.01 E-value=0.0042 Score=57.45 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=25.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (502)
++++++||+|+|||..... +...+.. .+..++++ +..+|..++
T Consensus 107 ~nlll~Gp~GtGKTHLa~A-ia~~a~~--~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAA-IGLALIE--NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred ceEEEEecCCCcHHHHHHH-HHHHHHH--cCCceeee-eHHHHHHHH
Confidence 8999999999999975332 2222222 23344444 445565554
No 217
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.0044 Score=62.15 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=62.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+.+++.|++|+|||.. +.++.+.+.....+.+++++.+ .++...+...+....
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH------------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------------
Confidence 5699999999999964 3445554443334556666555 456555544433200
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
+.+..+.. .+.++++||+||+|.+.......+.+..++..+... ..|+|+.|-..|..+
T Consensus 195 -----------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~--~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -----------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN--DKQLFFSSDKSPELL 253 (450)
T ss_pred -----------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCcEEEECCCCHHHH
Confidence 11111111 134677899999998764222344555666665443 335555555444444
No 218
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.94 E-value=0.066 Score=54.48 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=83.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhCCC-------cEEEecCCCCHHHHHHHHHHHH----cCCCeEEEEc--CccccCCCC
Q 010762 350 MGQTIIFVRTKNSASALHKALKDFGY-------EVTTIMGATIQEERDKIVKEFK----DGLTQVLIST--DVLARGFDQ 416 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~~~-------~~~~l~~~~~~~~r~~~~~~f~----~~~~~iLv~T--~~~~~Gldi 416 (502)
.+.+++|++|.+-...+.+.+...|+ +-+.+-...+ -+.+++.|. .|.-.+|+|. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47899999999999999988886653 2222222222 455677775 4555566664 778999999
Q ss_pred CC--CCEEEEecCCCCCCCC-------------CCC---Ccc--------chhhhhcccccCCCcceEEEEeeCCccHHH
Q 010762 417 QQ--VNLIVNYDPPVKHGKH-------------LEP---DCE--------VYLHRIGRAGRFGRKGVVFNLLMDGDDMII 470 (502)
Q Consensus 417 ~~--v~~VI~~~~p~~~~~~-------------~~~---s~~--------~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~ 470 (502)
.+ .+.||..++|+..... ++. +-+ ..-|.+|||-|.-++-.+|.++...-....
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~~p~ 785 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYARPL 785 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhcCch
Confidence 95 7889999999864432 121 111 235999999999888888888754333233
Q ss_pred HHHHHHHhC
Q 010762 471 MEKIERYFD 479 (502)
Q Consensus 471 ~~~i~~~l~ 479 (502)
.+.+-+.++
T Consensus 786 ~RKLp~WI~ 794 (821)
T KOG1133|consen 786 SRKLPKWIR 794 (821)
T ss_pred hhhccHHHH
Confidence 334444443
No 219
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.90 E-value=0.0055 Score=61.86 Aligned_cols=111 Identities=13% Similarity=0.198 Sum_probs=58.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+.+++.||+|+|||.. +-++...+.....+.+++++ +...+..++...+..-
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~~~~-------------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNALRNN-------------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHcC--------------------------
Confidence 5699999999999986 33444444433334456655 3344544433332110
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHH
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 297 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~ 297 (502)
+...+... +.++++|||||+|.+.........+..++..+... ..++++.|...|..+.
T Consensus 201 ---------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ---------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKELP 259 (450)
T ss_pred ---------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHH
Confidence 11222222 33567899999998765222233444555555432 3355544444444443
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.89 E-value=0.0056 Score=53.92 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=66.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
+-+++.||||+|||.+..- +..++... +.++.+++ ..|.=+. ++++.++...++.+.......
T Consensus 2 ~vi~lvGptGvGKTTt~aK-LAa~~~~~--~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAK-LAARLKLK--GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHH-HHHHHHHT--T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTS---------
T ss_pred EEEEEECCCCCchHhHHHH-HHHHHhhc--cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcch---------
Confidence 5688999999999997433 22333222 44455554 3343333 344555555454321110000
Q ss_pred CCCCCCeEEEeCchHH-HHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHH
Q 010762 219 RPPVTAQVVIGTPGTI-KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 297 (502)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~ 297 (502)
.|..+ .+.+.. ...+++++|++|-+-+...+.....++..++..+ .+..-.+++|||......
T Consensus 67 -----------~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 -----------DPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -----------CHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHH
T ss_pred -----------hhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc---CCccceEEEecccChHHH
Confidence 12222 233332 1234577899999976543222233444444444 335678999999876554
Q ss_pred HHHHHH
Q 010762 298 NFVTRI 303 (502)
Q Consensus 298 ~~~~~~ 303 (502)
..+..+
T Consensus 131 ~~~~~~ 136 (196)
T PF00448_consen 131 EQALAF 136 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 221
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.87 E-value=0.0032 Score=57.43 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=24.9
Q ss_pred eEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC
Q 010762 248 LKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (502)
Q Consensus 248 ~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~ 293 (502)
+++|++||+|.+.........+..++..+.... ..+ +++|++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g-~~~-li~ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESG-RTR-LLITGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcC-CCe-EEEeCCCC
Confidence 468999999988653233444555555544321 234 44555544
No 222
>PRK08727 hypothetical protein; Validated
Probab=96.84 E-value=0.0052 Score=55.97 Aligned_cols=50 Identities=4% Similarity=0.062 Sum_probs=26.7
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
+.++++||+||+|.+.........+..++..+... ..++++.|...|...
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~--~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAA--GITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHc--CCeEEEECCCChhhh
Confidence 34456899999998865322233344444444321 334555555444444
No 223
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.84 E-value=0.013 Score=53.28 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|+|||...
T Consensus 39 ~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLL 55 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999864
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.83 E-value=0.012 Score=56.21 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=26.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (502)
.++++.|+||+|||... .++...+.. .+..++++ +..+|..++
T Consensus 184 ~~Lll~G~~GtGKThLa-~aIa~~l~~--~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLS-NCIAKELLD--RGKSVIYR-TADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHH-HHHHHHHHH--CCCeEEEE-EHHHHHHHH
Confidence 88999999999999853 334444432 23344444 444555444
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.016 Score=57.64 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=66.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
+.+++.||||+|||.+..-.+...... ..+.++.++. |.|.-+. +.+..++...++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp----------------- 280 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAV---EQLKTYAKIMGIP----------------- 280 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHH---HHHHHHHHHhCCc-----------------
Confidence 789999999999998644322222101 1233455444 3343222 3344444333321
Q ss_pred CCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh-hHH
Q 010762 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE-TVK 297 (502)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~-~~~ 297 (502)
-..+.++..+...+.. +.++++|++|.+-+...+......+..++.. ...+....+++|||... .+.
T Consensus 281 ------~~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~--~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 281 ------VEVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEF--SGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ------eEccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc--cCCCCeEEEEEECCCCHHHHH
Confidence 1223455666666553 4468999999997643321122233334331 11223457889998764 333
Q ss_pred HHHHH
Q 010762 298 NFVTR 302 (502)
Q Consensus 298 ~~~~~ 302 (502)
..+..
T Consensus 349 ~~~~~ 353 (424)
T PRK05703 349 DIYKH 353 (424)
T ss_pred HHHHH
Confidence 33333
No 226
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.77 E-value=0.0029 Score=66.22 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
.+++.|..|+..++... ..++|.||+|+|||.+..-.+.+.+. .+.++|+++||...+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~-~~~lI~GpPGTGKT~t~~~ii~~~~~---~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSK-DLFLIHGPPGTGKTRTLVELIRQLVK---RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCC-CeEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46889999999988652 57889999999999874433333332 345899999999999999988876
No 227
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.77 E-value=0.0088 Score=59.92 Aligned_cols=117 Identities=14% Similarity=0.258 Sum_probs=61.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+.+++.|++|+|||.. +.++.+.+.....+.+++++... .+..+....+.. .
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~~~~~~v~yi~~~-~f~~~~~~~~~~---~----------------------- 182 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQNEPDLRVMYITSE-KFLNDLVDSMKE---G----------------------- 182 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEHH-HHHHHHHHHHhc---c-----------------------
Confidence 5699999999999986 34444544433334566766543 333333222210 0
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHH
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 300 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~ 300 (502)
+...+...+. ..+++|++||+|.+.+..+....+..++..+... ..++++.|-..|..+..+.
T Consensus 183 ---------~~~~f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~ 245 (440)
T PRK14088 183 ---------KLNEFREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQKLSEFQ 245 (440)
T ss_pred ---------cHHHHHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCCHHHHHHHH
Confidence 0112222111 2467899999998865322334455555555442 3355554445555554443
Q ss_pred HH
Q 010762 301 TR 302 (502)
Q Consensus 301 ~~ 302 (502)
..
T Consensus 246 ~r 247 (440)
T PRK14088 246 DR 247 (440)
T ss_pred HH
Confidence 33
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.022 Score=54.93 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=70.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcH-HHHHHHHHHHHHhhcccCceeeEeecCCCCCccccc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTR-ELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~-~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (502)
+.+++.||||+|||.....-+. .+. ..+.++.++. |.| ..+.|+. .++...++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~--~~GkkVglI~aDt~RiaAvEQLk----~yae~lgi----------------- 297 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFH--GKKKTVGFITTDHSRIGTVQQLQ----DYVKTIGF----------------- 297 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHH--HcCCcEEEEecCCcchHHHHHHH----HHhhhcCC-----------------
Confidence 6889999999999987444333 222 2233454444 334 2334433 33322221
Q ss_pred CCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh-hH
Q 010762 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE-TV 296 (502)
Q Consensus 218 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~-~~ 296 (502)
+-+.+.+|..+.+.+..-.- ..++++|++|-+-+...+ ...+..+.+.+....+..-++++|||... ++
T Consensus 298 ------pv~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd---~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 298 ------EVIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred ------cEEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcC---HHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 11334577777766654110 125789999999875542 23344444444433344456779998654 44
Q ss_pred HHHHHHH
Q 010762 297 KNFVTRI 303 (502)
Q Consensus 297 ~~~~~~~ 303 (502)
...+..+
T Consensus 368 ~~i~~~F 374 (436)
T PRK11889 368 IEIITNF 374 (436)
T ss_pred HHHHHHh
Confidence 5544444
No 229
>PRK08116 hypothetical protein; Validated
Probab=96.74 E-value=0.024 Score=52.72 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=26.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN 187 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~ 187 (502)
..+++.|++|+|||..+ .++.+.+... +..++++ +..++...+
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~--~~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEK--GVPVIFV-NFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHc--CCeEEEE-EHHHHHHHH
Confidence 45999999999999863 3455555432 3344444 444555443
No 230
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.73 E-value=0.03 Score=59.43 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=78.9
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEE
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 404 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iL 404 (502)
....+....|.......+......+.++||.++++..+..+++.|++ .+..+..+||+++..+|.+.+.....|..+|+
T Consensus 166 Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IV 245 (679)
T PRK05580 166 LLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVV 245 (679)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 33444455666666555555555678899999999999999999976 47899999999999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEec
Q 010762 405 ISTDVLARGFDQQQVNLIVNYD 426 (502)
Q Consensus 405 v~T~~~~~Gldi~~v~~VI~~~ 426 (502)
|+|..+.. +.+.++..||..+
T Consensus 246 VgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 246 IGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred EeccHHhc-ccccCCCEEEEEC
Confidence 99975432 5567888888654
No 231
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.73 E-value=0.0078 Score=59.97 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=24.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+++.|++|+|||.. +..+...+.....+..++++.
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHhCCCCcEEEEE
Confidence 4689999999999986 344555544333345666664
No 232
>PRK06921 hypothetical protein; Provisional
Probab=96.69 E-value=0.013 Score=54.33 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=26.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
..+++.|++|+|||.. +.++...+... .+..++++. ..++..+
T Consensus 118 ~~l~l~G~~G~GKThL-a~aia~~l~~~-~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHL-LTAAANELMRK-KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHhhh-cCceEEEEE-HHHHHHH
Confidence 7899999999999975 34444444322 134555554 3444444
No 233
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.67 E-value=0.0075 Score=61.75 Aligned_cols=111 Identities=13% Similarity=0.234 Sum_probs=60.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+.+++.|++|+|||.. +..+.+.+.....+.+++++. ..+++.++...+..-
T Consensus 315 NpL~LyG~sGsGKTHL-L~AIa~~a~~~~~g~~V~Yit-aeef~~el~~al~~~-------------------------- 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHL-LHAIGHYARRLYPGTRVRYVS-SEEFTNEFINSIRDG-------------------------- 366 (617)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHhc--------------------------
Confidence 4499999999999975 334444443322344555554 344554433322110
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHH
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 297 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~ 297 (502)
....|.. .+.++++||||++|.+.........+..++..+... +.++|+.|-..|..+.
T Consensus 367 ---------~~~~f~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 367 ---------KGDSFRR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDRPPKQLV 425 (617)
T ss_pred ---------cHHHHHH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCCChHhhh
Confidence 0111221 144578999999998865323344555666666442 3466665555555443
No 234
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.66 E-value=0.0022 Score=53.06 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=25.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
+.+++.||+|+|||.... .+...+.... ..++++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~-~l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR-ALARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHH-HHHhccCCCC--CCEEEECCEEcc
Confidence 789999999999999733 3333332221 246777666543
No 235
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.61 E-value=0.0062 Score=64.56 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
.+++-|+.++... . ..++|.|..|||||.+...-+...+.. .....++|+|+.|+..|..+.+.+..+.+
T Consensus 2 ~Ln~~Q~~av~~~--~--g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--T--GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--C--CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 3788999998753 2 568899999999999855555444433 33455899999999999999998887653
No 236
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.60 E-value=0.0039 Score=66.87 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
.++|-|+.++... . ..++|.|..|||||.+...-+...+.. .....++|+|+-|+..|..+.+.+.++.
T Consensus 4 ~Ln~~Q~~av~~~--~--g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAAP--P--GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcCC--C--CCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 5889999998653 2 579999999999999855444444432 3345689999999999999999888764
No 237
>PRK12377 putative replication protein; Provisional
Probab=96.60 E-value=0.031 Score=51.04 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=27.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (502)
.++++.|++|+|||.. +.++...+.. .+..+ +.++..+|..++..
T Consensus 102 ~~l~l~G~~GtGKThL-a~AIa~~l~~--~g~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHL-AAAIGNRLLA--KGRSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH--cCCCe-EEEEHHHHHHHHHH
Confidence 6899999999999976 3344444432 23334 44444566665443
No 238
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.60 E-value=0.0069 Score=63.57 Aligned_cols=140 Identities=18% Similarity=0.089 Sum_probs=84.9
Q ss_pred CCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 104 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 104 ~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
...+.|.+.+... ..++.-|++|+-.++.-. .-.+|.|=+|+|||..... ++..+. ..+.++|+.+-|...
T Consensus 655 ~~~~~p~~~~~~~-----~~LN~dQr~A~~k~L~ae-dy~LI~GMPGTGKTTtI~~-LIkiL~--~~gkkVLLtsyThsA 725 (1100)
T KOG1805|consen 655 SKVLIPKIKKIIL-----LRLNNDQRQALLKALAAE-DYALILGMPGTGKTTTISL-LIKILV--ALGKKVLLTSYTHSA 725 (1100)
T ss_pred ccccCchhhHHHH-----hhcCHHHHHHHHHHHhcc-chheeecCCCCCchhhHHH-HHHHHH--HcCCeEEEEehhhHH
Confidence 3445566555322 257789999999988762 4578889999999987333 333222 245679999999988
Q ss_pred HHHHHHHHHHhhcccCceeeEeecCCCCCc----------------ccccCCCCCCCeEEEeCchHHHHHHHcCccCCCc
Q 010762 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNY----------------VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (502)
Q Consensus 184 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 247 (502)
+..+.-.++.+.... .-+|....-. ....+.....+.|+.||=-.+.+.+- ..+.
T Consensus 726 VDNILiKL~~~~i~~-----lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~ 796 (1100)
T KOG1805|consen 726 VDNILIKLKGFGIYI-----LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQ 796 (1100)
T ss_pred HHHHHHHHhccCcce-----eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccc
Confidence 888877776543221 1111111111 01111223356788888544433322 3556
Q ss_pred eEEEEEeCchhhhc
Q 010762 248 LKILVYDEADHMLD 261 (502)
Q Consensus 248 ~~~lVlDEah~l~~ 261 (502)
+++.|+|||-++..
T Consensus 797 FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 797 FDYCIIDEASQILL 810 (1100)
T ss_pred cCEEEEcccccccc
Confidence 89999999998765
No 239
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.60 E-value=0.013 Score=54.49 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.++++.||+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 68999999999999864
No 240
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.59 E-value=0.024 Score=59.90 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=18.7
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHH
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~ 275 (502)
..+.+|||||+|.+... -.+.+..++..
T Consensus 868 r~v~IIILDEID~L~kK--~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK--TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc--HHHHHHHHHHH
Confidence 34678999999999862 23445555554
No 241
>PRK14974 cell division protein FtsY; Provisional
Probab=96.59 E-value=0.015 Score=55.57 Aligned_cols=131 Identities=13% Similarity=0.089 Sum_probs=67.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc---HHHHHHHHHHHHHhhcccCceeeEeecCCCCCccccc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT---RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt---~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (502)
.-+++.|++|+|||.+..-.+ ..+.. .+.+++++... .....|+...... .++.+.....+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--~g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g--------- 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--NGFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYG--------- 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--cCCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCC---------
Confidence 678999999999998633322 22322 33456555432 3444555443333 33322110000
Q ss_pred CCCCCCCeEEEeCchH-HHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 218 KRPPVTAQVVIGTPGT-IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 218 ~~~~~~~~Ilv~Tp~~-l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
..|.. +.+.+... ....+++|++|.+.++-.+..+..++..+...+. +...+++++||...+.
T Consensus 205 -----------~dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~---pd~~iLVl~a~~g~d~ 268 (336)
T PRK14974 205 -----------ADPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK---PDLVIFVGDALAGNDA 268 (336)
T ss_pred -----------CCHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC---CceEEEeeccccchhH
Confidence 01211 12222211 1235679999999987643334444554444332 3567889999876655
Q ss_pred HHHHHHH
Q 010762 297 KNFVTRI 303 (502)
Q Consensus 297 ~~~~~~~ 303 (502)
...+..+
T Consensus 269 ~~~a~~f 275 (336)
T PRK14974 269 VEQAREF 275 (336)
T ss_pred HHHHHHH
Confidence 5444444
No 242
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.017 Score=57.40 Aligned_cols=21 Identities=29% Similarity=0.192 Sum_probs=16.6
Q ss_pred ccEEEECcCCCcchhHhHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~i 161 (502)
..++++||.|+|||.++.+.+
T Consensus 41 ha~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999755433
No 243
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.49 E-value=0.011 Score=67.13 Aligned_cols=65 Identities=26% Similarity=0.297 Sum_probs=47.6
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh--HHHHHhccCCCCCCCeEEEecCcHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF--VLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~--l~~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (502)
.+++-|+.|+..++.+..+-++|.|..|+|||... ++.++..+. ...+..++.++||-..+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP-ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh-hccCceEEEEechHHHHHHHH
Confidence 58999999999999765588999999999999872 222222221 223557888999987776653
No 244
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.48 E-value=0.0045 Score=66.38 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=52.9
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC-CCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD-PNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~-~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
.++|-|+.++... . ..++|.|..|||||.+...-+...+. ......++|+|+-|+..|..+.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~~--~--g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--L--GNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--C--CCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 4889999998743 2 57899999999999985444443343 23345689999999999999999888764
No 245
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.47 E-value=0.02 Score=61.44 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=26.8
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
...++++||||+|+|... ..+.+++.+...+....+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~-----a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQ-----GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHH-----HHHHHHHHHhCCCCCeEEEEEe
Confidence 357899999999998763 2445666666555455555544
No 246
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.47 E-value=0.022 Score=56.68 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=23.4
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
..++++.||+|+|||.. +-.++..+........++++
T Consensus 55 ~~~~lI~G~~GtGKT~l-~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT-VKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHhcCCcEEEEE
Confidence 36899999999999997 34444444322223344444
No 247
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.46 E-value=0.014 Score=66.96 Aligned_cols=65 Identities=26% Similarity=0.289 Sum_probs=48.1
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC--CCCCCCeEEEecCcHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLKAPQALCICPTRELAIQNL 188 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~--~~~~~~~~lil~Pt~~La~q~~ 188 (502)
.+++-|+.|+..++.+..+-++|.|..|+|||.. +-.++..+. ....+..++.++||--.+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 5899999999999986457899999999999986 333333332 1223457888999987776543
No 248
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.44 E-value=0.037 Score=55.66 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=26.8
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
....+++|+||+|.|... ..+.+++.+...++...+++ .+|
T Consensus 114 ~~~~KVvIIDEah~Ls~~-----A~NaLLK~LEePp~~v~fIl-att 154 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS-----AFNALLKTLEEPAPHVKFIL-ATT 154 (491)
T ss_pred cCCceEEEEeChHhCCHH-----HHHHHHHHHhCCCCCeEEEE-EeC
Confidence 457899999999988652 34556666665544444444 345
No 249
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.017 Score=57.77 Aligned_cols=115 Identities=10% Similarity=0.233 Sum_probs=60.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+.+++.|++|+|||.. +-++...+.. .+.+++++.. ..+..+....+..
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~--~~~~v~yi~~-~~f~~~~~~~l~~--------------------------- 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRE--SGGKILYVRS-ELFTEHLVSAIRS--------------------------- 190 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHH--cCCCEEEeeH-HHHHHHHHHHHhc---------------------------
Confidence 5699999999999985 3344444432 2445666653 3344332222210
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHH
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 300 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~ 300 (502)
.....+... +..+++|++||+|.+.....-...+..++..+... ..++++.|-+.|..+..+.
T Consensus 191 --------~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~--~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 191 --------GEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE--GKLIVISSTCAPQDLKAME 253 (445)
T ss_pred --------chHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC--CCcEEEecCCCHHHHhhhH
Confidence 001112211 34577999999998865322344455555544332 3455555545555554443
Q ss_pred HHH
Q 010762 301 TRI 303 (502)
Q Consensus 301 ~~~ 303 (502)
..+
T Consensus 254 ~rL 256 (445)
T PRK12422 254 ERL 256 (445)
T ss_pred HHH
Confidence 343
No 250
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.028 Score=58.74 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=29.0
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHhHH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~l~ 159 (502)
..+|+++--...+++.|... +-.++ .+-+|++|+.|+|||....+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~a----------------L~~gRL~HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHA----------------LDGGRLHHAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHH----------------HhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 45677776666666666541 11221 24569999999999987544
No 251
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.028 Score=59.20 Aligned_cols=128 Identities=18% Similarity=0.150 Sum_probs=68.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec-Cc-HHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC-PT-RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~-Pt-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
+-+.+.||||+|||.+...-... +.....+.++.++. .+ |.=+ .+.++.++...++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~-~~~~~G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvp----------------- 244 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR-CVAREGADQLALLTTDSFRIGA---LEQLRIYGRILGVP----------------- 244 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh-HHHHcCCCeEEEecCcccchHH---HHHHHHHHHhCCCC-----------------
Confidence 67899999999999864332221 21111122444443 32 2112 23444444443331
Q ss_pred CCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhh-hcCCCeeEEEEeecCCh-hH
Q 010762 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE-RSSGHCQVLLFSATFNE-TV 296 (502)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~-~~~~~~q~v~~SAT~~~-~~ 296 (502)
-.++.+|..+.+.+.. +.+.++|+||=+-+.-.+ ..+...+..+. ...+...++++|||... .+
T Consensus 245 ------v~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d----~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 245 ------VHAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRD----RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred ------ccccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccC----HHHHHHHHHHhccCCCCeEEEEECCCCcHHHH
Confidence 1233477777776664 456689999999865432 11222233322 23335568888999753 33
Q ss_pred HHHHHHH
Q 010762 297 KNFVTRI 303 (502)
Q Consensus 297 ~~~~~~~ 303 (502)
.+.+..|
T Consensus 311 ~~i~~~f 317 (767)
T PRK14723 311 NEVVHAY 317 (767)
T ss_pred HHHHHHH
Confidence 4444444
No 252
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.37 E-value=0.01 Score=57.90 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=46.5
Q ss_pred cEEEEcCChhhHHHHHHHHHhCCCc------EEEecCCCCHHHHHHHHHHHH----cCCCeEE--EEcCccccCCCCCCC
Q 010762 352 QTIIFVRTKNSASALHKALKDFGYE------VTTIMGATIQEERDKIVKEFK----DGLTQVL--ISTDVLARGFDQQQV 419 (502)
Q Consensus 352 ~~lVF~~s~~~~~~l~~~L~~~~~~------~~~l~~~~~~~~r~~~~~~f~----~~~~~iL--v~T~~~~~Gldi~~v 419 (502)
.++.|+.|.--.+.+.......|+- -..+-+.-...+-.-.++.++ +|.-.|| |+-.-.++|+|+.+-
T Consensus 532 G~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~hh 611 (755)
T KOG1131|consen 532 GIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDHH 611 (755)
T ss_pred ceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccccc
Confidence 4567777766666665554444320 122223333333344555554 4555555 556778999999875
Q ss_pred C--EEEEecCCCC
Q 010762 420 N--LIVNYDPPVK 430 (502)
Q Consensus 420 ~--~VI~~~~p~~ 430 (502)
. .||.++.|..
T Consensus 612 yGR~ViM~gIP~q 624 (755)
T KOG1131|consen 612 YGREVIMEGIPYQ 624 (755)
T ss_pred cCceEEEEeccch
Confidence 5 8999999954
No 253
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.35 E-value=0.015 Score=60.52 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
+....+..-|.+.+..++.+..+-+++.|.-|=|||.+..+.+....... ...+++|..|+.+-++.+++.+.+-....
T Consensus 210 l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-~~~~iiVTAP~~~nv~~Lf~fa~~~l~~l 288 (758)
T COG1444 210 LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-GSVRIIVTAPTPANVQTLFEFAGKGLEFL 288 (758)
T ss_pred hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHHHHhHHHh
Confidence 34445555566677777777667899999999999998776663222221 15689999999999999988777666555
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
|..-......... ..........|=+-.|.... ..-++||+|||=-+-- .-+..++..
T Consensus 289 g~~~~v~~d~~g~----~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIpl-----plL~~l~~~--- 346 (758)
T COG1444 289 GYKRKVAPDALGE----IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIPL-----PLLHKLLRR--- 346 (758)
T ss_pred CCccccccccccc----eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCCh-----HHHHHHHhh---
Confidence 5432211111100 00011112235555554322 1156899999975432 222333322
Q ss_pred cCCCeeEEEEeecCC
Q 010762 279 SSGHCQVLLFSATFN 293 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~ 293 (502)
.+.++||.|..
T Consensus 347 ----~~rv~~sTTIh 357 (758)
T COG1444 347 ----FPRVLFSTTIH 357 (758)
T ss_pred ----cCceEEEeeec
Confidence 25689999975
No 254
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.35 E-value=0.06 Score=48.86 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+.+++.|++|+|||..
T Consensus 43 ~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 43 RFFYLWGEAGSGRSHL 58 (227)
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999974
No 255
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.035 Score=53.94 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=24.0
Q ss_pred hhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC
Q 010762 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (502)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~ 168 (502)
|.+..+...++++.|+||+|||.+ +-.++..+...
T Consensus 35 ~~~~~~~p~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 35 PALRGERPSNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred HHhcCCCCccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 444444446799999999999998 44455555443
No 256
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.022 Score=54.56 Aligned_cols=38 Identities=11% Similarity=-0.093 Sum_probs=28.8
Q ss_pred CcHHHHhhhhhhcCCC--CccEEEECcCCCcchhHhHHHH
Q 010762 124 PSKIQAISLPMILTPP--YRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~--~~~~lv~a~TGsGKTl~~l~~i 161 (502)
.+|||...|..++... ..-.++.||.|.|||..+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 4688888888887642 3468999999999998754433
No 257
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.33 E-value=0.013 Score=62.59 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=53.1
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
++|-|++++... . ..++|.|..|||||.+.+--+...+.. .....++|+|+.|+..+.++.+.+.+..+
T Consensus 2 Ln~~Q~~av~~~--~--~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEYV--T--GPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhCC--C--CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 678899888642 3 679999999999999865555555533 23456899999999999999998877653
No 258
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.31 E-value=0.044 Score=55.82 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=50.3
Q ss_pred HHHHhhhhhhcC-----C--CCccEEEECcCCCcchhHhHHHHHhcc-CCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 126 KIQAISLPMILT-----P--PYRNLIAQARNGSGKTTCFVLGMLSRV-DPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 126 ~~Q~~~i~~il~-----~--~~~~~lv~a~TGsGKTl~~l~~il~~l-~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
|+|+..+-.++. | ..+.+++.-+-|-|||......++..+ .....+..+++++++++-|..++..+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 566655555541 1 134688888999999986544444333 34445678999999999999999988887655
No 259
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.29 E-value=0.033 Score=59.33 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=77.3
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
....+....|.....-.+......+.+++|.+||..-|...++.++. .++.+..+||+++..+|..+++...+|..
T Consensus 286 Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~ 365 (681)
T PRK10917 286 LLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEA 365 (681)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 34445555665544433444445677999999999999988877664 47899999999999999999999999999
Q ss_pred eEEEEcCc-cccCCCCCCCCEEEE
Q 010762 402 QVLISTDV-LARGFDQQQVNLIVN 424 (502)
Q Consensus 402 ~iLv~T~~-~~~Gldi~~v~~VI~ 424 (502)
.|+|+|.. +...+.+.++.+||.
T Consensus 366 ~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 366 DIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CEEEchHHHhcccchhcccceEEE
Confidence 99999964 455677888998885
No 260
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.27 E-value=0.018 Score=52.94 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=57.9
Q ss_pred HHHHHHHcCCCeEEEEcCccccCCCCCC--------CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCC-cceEEEE
Q 010762 391 KIVKEFKDGLTQVLISTDVLARGFDQQQ--------VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR-KGVVFNL 461 (502)
Q Consensus 391 ~~~~~f~~~~~~iLv~T~~~~~Gldi~~--------v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~-~g~~~~~ 461 (502)
...+.|.+|+..|+|.++.++.|+.+.. -++-|...+|| |+...+|..||+.|.|+ ..-.|.+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pw--------sad~aiQ~~GR~hRsnQ~~~P~y~~ 123 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPW--------SADKAIQQFGRTHRSNQVSAPEYRF 123 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCC--------CHHHHHHHhccccccccccCCEEEE
Confidence 4567899999999999999999998863 34466788884 78889999999999987 3445555
Q ss_pred eeCCc--cHHHHHHHHHHh
Q 010762 462 LMDGD--DMIIMEKIERYF 478 (502)
Q Consensus 462 ~~~~~--~~~~~~~i~~~l 478 (502)
+..+- +..+...+.+.+
T Consensus 124 l~t~~~gE~Rfas~va~rL 142 (278)
T PF13871_consen 124 LVTDLPGERRFASTVARRL 142 (278)
T ss_pred eecCCHHHHHHHHHHHHHH
Confidence 55332 334444444443
No 261
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.05 Score=51.70 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCCcHHHHhhhhhhcC----CC-CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 122 QKPSKIQAISLPMILT----PP-YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~----~~-~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
..++|||..+|..+.. |. ..-+++.||.|+||+..+...+-..+........ -|+.. +.+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~c----------~~~~~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRTR----------QLIAA 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchHH----------HHHhc
Confidence 4578899988877653 32 2369999999999998654433222222211110 12211 11111
Q ss_pred ccCceeeEee-cCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHH
Q 010762 197 HTGITSECAV-PTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (502)
Q Consensus 197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~ 275 (502)
.....+..+. ....... .....|.|-.--.+.+.+..... ....+++|||+||.|.. ...+.+++.
T Consensus 70 g~HPD~~~i~~~p~~~~~-------k~~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~-----~AaNaLLKt 136 (319)
T PRK08769 70 GTHPDLQLVSFIPNRTGD-------KLRTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINR-----AACNALLKT 136 (319)
T ss_pred CCCCCEEEEecCCCcccc-------cccccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCH-----HHHHHHHHH
Confidence 1111111110 0000000 00112433332233333322222 34679999999999875 335667777
Q ss_pred hhhcCCCeeEEEEeec
Q 010762 276 IERSSGHCQVLLFSAT 291 (502)
Q Consensus 276 l~~~~~~~q~v~~SAT 291 (502)
+...+++..++++|..
T Consensus 137 LEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 137 LEEPSPGRYLWLISAQ 152 (319)
T ss_pred hhCCCCCCeEEEEECC
Confidence 7766556666666554
No 262
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.24 E-value=0.016 Score=61.07 Aligned_cols=70 Identities=23% Similarity=0.112 Sum_probs=51.6
Q ss_pred CCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC-CCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-LKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~-~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
..+++-|+.++-.- . .+++|.|..|||||.+.+.-+...+... ..+.++|+++.|+..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~~--~--~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG--E--DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC--C--CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 45899999988632 2 5689999999999998544433333222 345589999999999999998887654
No 263
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.21 E-value=0.0033 Score=53.77 Aligned_cols=124 Identities=20% Similarity=0.211 Sum_probs=51.8
Q ss_pred EEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCC
Q 010762 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVT 223 (502)
Q Consensus 144 lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (502)
++.|+-|-|||.+..+.+...+... ..+++|..|+.+-++.+++.+..-....+.+..... ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK-----RIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhcccccccccccc-----cccccccccccc
Confidence 5788999999997555444333222 257999999999998888876655444333220000 000000111113
Q ss_pred CeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC
Q 010762 224 AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (502)
Q Consensus 224 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~ 293 (502)
..|-+..|+.+... ....++||||||=.+-- . ++..+.. ....++||.|..
T Consensus 74 ~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp~-----p----~L~~ll~---~~~~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAE-------KPQADLLIVDEAAAIPL-----P----LLKQLLR---RFPRVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT-----------SCEEECTGGGS-H-----H----HHHHHHC---CSSEEEEEEEBS
T ss_pred ceEEEECCHHHHhC-------cCCCCEEEEechhcCCH-----H----HHHHHHh---hCCEEEEEeecc
Confidence 45666677655332 11347899999975532 1 2223322 224678888865
No 264
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.094 Score=52.81 Aligned_cols=128 Identities=14% Similarity=0.150 Sum_probs=62.0
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCccccc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (502)
++.+.+.|+||+|||......+.. +.....+.++.++. +.+..+. +++..++...++.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~-la~~~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v--------------- 410 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR-FAAQHAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAV--------------- 410 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-HHHhcCCCceEEEecccccccHH---HHHHHhhcccCcee---------------
Confidence 388999999999999864332222 11111223444443 2343322 23333333322211
Q ss_pred CCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC-hhH
Q 010762 218 KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN-ETV 296 (502)
Q Consensus 218 ~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~-~~~ 296 (502)
..+.++..+...+.. +.++++|+||.+-+...+......+. .+........+++++++.. ..+
T Consensus 411 --------~~a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~----~L~aa~~~a~lLVLpAtss~~Dl 474 (559)
T PRK12727 411 --------HEADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLN----WLRAARQVTSLLVLPANAHFSDL 474 (559)
T ss_pred --------EecCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHH----HHHHhhcCCcEEEEECCCChhHH
Confidence 111244556666653 45688999999976432211111222 2221112345778888864 333
Q ss_pred HHHHHH
Q 010762 297 KNFVTR 302 (502)
Q Consensus 297 ~~~~~~ 302 (502)
...+..
T Consensus 475 ~eii~~ 480 (559)
T PRK12727 475 DEVVRR 480 (559)
T ss_pred HHHHHH
Confidence 333333
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.20 E-value=0.061 Score=45.65 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=23.7
Q ss_pred EEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 143 ~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
+++.|++|+|||......+..... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcch
Confidence 688999999999864433332221 34567777654433
No 266
>PLN03025 replication factor C subunit; Provisional
Probab=96.20 E-value=0.049 Score=52.33 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=27.7
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l 158 (502)
+.+|+++--+..++..|.. + +-.++..+++++||+|+|||....
T Consensus 9 P~~l~~~~g~~~~~~~L~~-~---------------~~~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQV-I---------------ARDGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CCCHHHhcCcHHHHHHHHH-H---------------HhcCCCceEEEECCCCCCHHHHHH
Confidence 4566666555666665543 1 112223579999999999998643
No 267
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.19 E-value=0.033 Score=56.80 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
...|.......+......++++||.++++.-+..+++.|++ .+..+..+||+++..+|.+.+.+..+|+..|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 34555555554555555678899999999999999999975 47889999999999999999999999999999999764
Q ss_pred ccCCCCCCCCEEEEec
Q 010762 411 ARGFDQQQVNLIVNYD 426 (502)
Q Consensus 411 ~~Gldi~~v~~VI~~~ 426 (502)
-. +.+.++..||..+
T Consensus 87 lf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 87 LF-LPFKNLGLIIVDE 101 (505)
T ss_pred Hc-CcccCCCEEEEEC
Confidence 42 4566888888644
No 268
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.044 Score=56.42 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=27.6
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEee
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSA 290 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SA 290 (502)
...++++||||+|+|... ..+.+++.+...+.++.+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~-----AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH-----AFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHH-----HHHHHHHhhccCCCCceEEEEeC
Confidence 446889999999998752 34566676766555565555543
No 269
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.18 E-value=0.02 Score=59.10 Aligned_cols=129 Identities=18% Similarity=0.161 Sum_probs=76.9
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH-HHHHhhcccCce
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE-VLRKMGKHTGIT 201 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~-~~~~~~~~~~~~ 201 (502)
..+|+|...+..+....-+.++++.++-+|||.+.+..+...+... ...+|++.||.++|..+.+ .+..+.......
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 4678888888877665457899999999999997555554444433 3469999999999999884 555554433321
Q ss_pred eeEeec---CCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhc
Q 010762 202 SECAVP---TDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 202 ~~~~~~---~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~ 261 (502)
...+.. ....+. .......+..+.+..-..- ..+.-..++++++||+|.+-.
T Consensus 94 ~~~~~~~~~~~~~~t--~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNT--ILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHhCchhhcccCCc--hhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccc
Confidence 111111 011111 1111111334444432211 223345678999999999853
No 270
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.015 Score=58.18 Aligned_cols=147 Identities=14% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCCCCccCCCCCHHHHHHHHhh--CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeE
Q 010762 97 TSATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQA 174 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~--~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~ 174 (502)
-+..+|++.|--.++...|... ..++.|--+++..+.. ...++++||+|.|||+.+ -++.+. .+-.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-----PsGvLL~GPPGCGKTLlA-KAVANE-----ag~N- 572 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-----PSGVLLCGPPGCGKTLLA-KAVANE-----AGAN- 572 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-----CCceEEeCCCCccHHHHH-HHHhhh-----ccCc-
Confidence 3567899999777776665421 2444555555544432 156999999999999853 111111 1100
Q ss_pred EEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEe
Q 010762 175 LCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (502)
Q Consensus 175 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlD 254 (502)
.|-+---||.+ ..|+-.++..+-+-.. ...+..++|.||
T Consensus 573 FisVKGPELlN----------------------------------------kYVGESErAVR~vFqR-AR~saPCVIFFD 611 (802)
T KOG0733|consen 573 FISVKGPELLN----------------------------------------KYVGESERAVRQVFQR-ARASAPCVIFFD 611 (802)
T ss_pred eEeecCHHHHH----------------------------------------HHhhhHHHHHHHHHHH-hhcCCCeEEEec
Confidence 11111113322 2223333333322211 123456789999
Q ss_pred CchhhhcccC------CHHHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 255 EADHMLDEAG------FRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 255 Eah~l~~~~~------~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
|+|-|....+ -...++.++..+........++++.||=.+++
T Consensus 612 EiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 612 EIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred chhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 9998875222 23455666666766666778999999966554
No 271
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.066 Score=55.58 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=27.3
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
+...+++||||+|.|... ....+++.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-----a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-----AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-----HHHHHHHHHHhCCCCeEEEEEe
Confidence 567899999999988752 3455666666555555555544
No 272
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.029 Score=54.58 Aligned_cols=51 Identities=12% Similarity=0.256 Sum_probs=36.3
Q ss_pred ceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHH
Q 010762 247 RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNF 299 (502)
Q Consensus 247 ~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~ 299 (502)
+++++++|.++.+.........+..++..+.... .|+++.|...|..+..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~--kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG--KQIVLTSDRPPKELNGL 225 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC--CEEEEEcCCCchhhccc
Confidence 6889999999998775445666666777776543 37888777777665543
No 273
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.14 E-value=0.069 Score=50.19 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.++++.||+|+|||..+
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 68999999999999864
No 274
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.097 Score=47.74 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=25.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 185 (502)
..+++.|++|+|||... ..+...+.. .+..++++ +..+|..
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~--~g~~v~~i-t~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLL--RGKSVLII-TVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHh--cCCeEEEE-EHHHHHH
Confidence 57999999999999863 344444433 23345554 3334433
No 275
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.10 E-value=0.071 Score=56.00 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-C-CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-G-YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 333 ~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~-~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
..|...+...+......++.+||.++.+..+..+...|+.. + ..+..+|++++..+|.+.+.+..+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46777888877777778889999999999999999999865 4 679999999999999999999999999999999875
Q ss_pred ccCCCCCCCCEEEEec
Q 010762 411 ARGFDQQQVNLIVNYD 426 (502)
Q Consensus 411 ~~Gldi~~v~~VI~~~ 426 (502)
.- .-+++...||..+
T Consensus 251 vF-aP~~~LgLIIvdE 265 (665)
T PRK14873 251 VF-APVEDLGLVAIWD 265 (665)
T ss_pred EE-eccCCCCEEEEEc
Confidence 53 4566788888654
No 276
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.049 Score=53.67 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=61.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
..+.+.||||+|||.....-+-..+.........++.+.+.-. -..+.+..++...++..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~------------------ 251 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI--GGHEQLRIYGKLLGVSV------------------ 251 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch--hHHHHHHHHHHHcCCce------------------
Confidence 7899999999999986433222121111112234555554222 22333444444434321
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc-CCCeeEEEEeecCChh
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS-SGHCQVLLFSATFNET 295 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~-~~~~q~v~~SAT~~~~ 295 (502)
..+.++..+...+.. +.+.+.+++|.+-+.-. ...+..-+..+... .+...++++|||....
T Consensus 252 -----~~v~~~~dl~~al~~----l~~~d~VLIDTaGrsqr----d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~ 314 (420)
T PRK14721 252 -----RSIKDIADLQLMLHE----LRGKHMVLIDTVGMSQR----DQMLAEQIAMLSQCGTQVKHLLLLNATSSGD 314 (420)
T ss_pred -----ecCCCHHHHHHHHHH----hcCCCEEEecCCCCCcc----hHHHHHHHHHHhccCCCceEEEEEcCCCCHH
Confidence 222344444444432 56678899998743221 12222333333322 2234678899997644
No 277
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.08 E-value=0.014 Score=50.61 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=25.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
+++++.|++|+|||..+.. +...+.. .+..++++ +..+|...
T Consensus 48 ~~l~l~G~~G~GKThLa~a-i~~~~~~--~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA-IANEAIR--KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH-HHHHHHH--TT--EEEE-EHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH-HHHHhcc--CCcceeEe-ecCceecc
Confidence 8999999999999987433 3333332 33345554 44456554
No 278
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.05 E-value=0.064 Score=53.32 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=83.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHH-HHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE-LAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~-La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+-.++.|..|||||.+..+-++..+.....+.+++++-|+.. |...++..+.......++....-...... . . ..
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-~--i-~~ 77 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-E--I-KI 77 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc-E--E-Ee
Confidence 457889999999999887777766655334567888888876 77777777776665555431111111100 0 0 01
Q ss_pred CCCCCeEEEeCc-hHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHH
Q 010762 220 PPVTAQVVIGTP-GTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKN 298 (502)
Q Consensus 220 ~~~~~~Ilv~Tp-~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~ 298 (502)
...+..|++..- +....+ .....+.++.+|||..+.. +.+..++..++... ....+++|.|++...--
T Consensus 78 ~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~-----~~~~~l~~rlr~~~-~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTF-----EDIKELIPRLRETG-GKKFIIFSSNPESPLHW 146 (396)
T ss_pred cCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCH-----HHHHHHHHHhhccC-CccEEEEEcCcCCCccH
Confidence 111334555443 221111 1234478999999998753 23444555554322 22258889887653333
Q ss_pred HHHHHh
Q 010762 299 FVTRIV 304 (502)
Q Consensus 299 ~~~~~~ 304 (502)
+...+.
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 333343
No 279
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.078 Score=54.77 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=27.0
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++||||+|+|... ..+.+++.+...++...+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~-----A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-----GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-----HHHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999998753 3455666666555455555544
No 280
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.075 Score=56.75 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=26.6
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~ 293 (502)
...+++||||||+|.. .....+++.+...+....+|+. .|-+
T Consensus 118 gk~KViIIDEAh~LT~-----eAqNALLKtLEEPP~~vrFILa-TTe~ 159 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR-----SSFNALLKTLEEPPEHVKFLLA-TTDP 159 (944)
T ss_pred CCcEEEEEechHhcCH-----HHHHHHHHHHhccCCCeEEEEE-CCCc
Confidence 4678999999999864 2345556666554445555554 4433
No 281
>CHL00181 cbbX CbbX; Provisional
Probab=95.96 E-value=0.083 Score=49.66 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.0
Q ss_pred ccEEEECcCCCcchhHhHH
Q 010762 141 RNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~ 159 (502)
.++++.||+|+|||..+-.
T Consensus 60 ~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6799999999999987433
No 282
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.059 Score=54.93 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=25.9
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
.+++++||||+|+|... ..+.+++.+...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~-----a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-----SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH-----HHHHHHHHHhccCCCeEEEEEE
Confidence 46789999999988752 2445666666555455555544
No 283
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.95 E-value=0.067 Score=49.53 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=68.7
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC--cH-HHHHHHHHHHHHhhcccCceeeEeecCCCCCcccc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP--TR-ELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P--t~-~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (502)
+..+.+.+++|+|||..+..-+.. +. ..+.++.++.. .| ..+.||... +...++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~-l~--~~~~~v~~i~~D~~ri~~~~ql~~~----~~~~~~---------------- 131 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ-FH--GKKKTVGFITTDHSRIGTVQQLQDY----VKTIGF---------------- 131 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HH--HcCCeEEEEecCCCCHHHHHHHHHH----hhhcCc----------------
Confidence 378999999999999965543322 21 12334444442 22 444554433 222221
Q ss_pred cCCCCCCCeEEE-eCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh-
Q 010762 217 SKRPPVTAQVVI-GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE- 294 (502)
Q Consensus 217 ~~~~~~~~~Ilv-~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~- 294 (502)
.+.. .++..+.+.+..-. ...++++|++|-+=+...+ ...+..+.+.+....+...++++|||...
T Consensus 132 --------~~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~---~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 132 --------EVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred --------eEEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC---HHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 2222 35666655554211 1246789999999875432 22233333333333334457789998754
Q ss_pred hHHHHHHHH
Q 010762 295 TVKNFVTRI 303 (502)
Q Consensus 295 ~~~~~~~~~ 303 (502)
+....+..+
T Consensus 200 d~~~~~~~f 208 (270)
T PRK06731 200 DMIEIITNF 208 (270)
T ss_pred HHHHHHHHh
Confidence 555555544
No 284
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.068 Score=53.92 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.6
Q ss_pred ccEEEECcCCCcchhHhHH
Q 010762 141 RNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~ 159 (502)
..++++||+|+|||..+.+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4579999999999987544
No 285
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.072 Score=54.23 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEE
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLL 287 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~ 287 (502)
+...++|||||+|.+.. ..+..+++.+...++...+|+
T Consensus 114 ~~~~kVVIIDEad~ls~-----~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK-----SAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred cCCCeEEEEECccccCH-----HHHHHHHHHHHhCCCCEEEEE
Confidence 45778999999998754 334556666655433333333
No 286
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.89 E-value=0.06 Score=56.86 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=76.7
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
.+.-+....|.....-.+......+.+++|.+|+..-|...++.++. .|+++..+||+++..+|...++...+|..
T Consensus 260 Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~ 339 (630)
T TIGR00643 260 LLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI 339 (630)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC
Confidence 34445555666544333444445678999999999999988877764 37899999999999999999999999999
Q ss_pred eEEEEcCc-cccCCCCCCCCEEEE
Q 010762 402 QVLISTDV-LARGFDQQQVNLIVN 424 (502)
Q Consensus 402 ~iLv~T~~-~~~Gldi~~v~~VI~ 424 (502)
.|+|+|.. +...+.+.++.+||.
T Consensus 340 ~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 340 HLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CEEEecHHHHhccccccccceEEE
Confidence 99999965 445677788888885
No 287
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.83 E-value=0.0093 Score=66.89 Aligned_cols=93 Identities=28% Similarity=0.430 Sum_probs=75.0
Q ss_pred EEEEcCChhhHHHHHHHHHhCC-CcEEEecCCCC-----------HHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCC
Q 010762 353 TIIFVRTKNSASALHKALKDFG-YEVTTIMGATI-----------QEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN 420 (502)
Q Consensus 353 ~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~~~~~-----------~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~ 420 (502)
.++|++....+..+.+.++... ..+..+.|.+. +..+..++..|....+.+|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 4888988888888888887642 23333444332 23477899999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCccchhhhhcccccCC
Q 010762 421 LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 453 (502)
Q Consensus 421 ~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g 453 (502)
.|+.++.| .....|+|+.||+-+..
T Consensus 375 ~~~~~~~~--------~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAP--------TYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCc--------chHHHHHHhhcccccch
Confidence 99999999 67788999999997764
No 288
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.077 Score=50.42 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=16.0
Q ss_pred CCccEEEECcCCCcchhH
Q 010762 139 PYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 139 ~~~~~lv~a~TGsGKTl~ 156 (502)
+.+.++..||+|+|||+.
T Consensus 244 PWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred ccceeeeeCCCCCcHHHH
Confidence 467899999999999984
No 289
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.80 E-value=0.042 Score=55.08 Aligned_cols=93 Identities=26% Similarity=0.238 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHhhCCCCCCcH----HHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHH---HhccCCCCCCCeEEE
Q 010762 104 DLNLSPELLKGLYVEMKFQKPSK----IQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGM---LSRVDPNLKAPQALC 176 (502)
Q Consensus 104 ~~~l~~~l~~~l~~~~g~~~p~~----~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~i---l~~l~~~~~~~~~li 176 (502)
+.++..+++....++..-..+.. +|++-=..|-...+.-++|+|..|||||.+++--+ +........+..+||
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEE
Confidence 34566666554433232222222 34443333433334789999999999999865432 223333344556999
Q ss_pred ecCcHHHHHHHHHHHHHhhc
Q 010762 177 ICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~ 196 (502)
+.|.+.+..-+.+++-.++.
T Consensus 266 l~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EcCcHHHHHHHHHhchhhcc
Confidence 99999999888888877754
No 290
>PHA02533 17 large terminase protein; Provisional
Probab=95.79 E-value=0.16 Score=52.13 Aligned_cols=72 Identities=17% Similarity=0.059 Sum_probs=51.9
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
.|.|+|...+..+..+ +-.++..+-..|||.+....++..... ..+..+++++|++.-|..+++.++.+...
T Consensus 59 ~L~p~Q~~i~~~~~~~--R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 59 QMRDYQKDMLKIMHKN--RFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CCcHHHHHHHHHHhcC--eEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3778999988877555 566777788899999866444333222 23458999999999999988887765443
No 291
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.086 Score=53.65 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=26.7
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++|+||||+|... ....+++.+...++...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-----A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-----AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-----HHHHHHHHHhhcCCceEEEEEE
Confidence 467899999999988752 2445566665555456555544
No 292
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.084 Score=51.66 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++|+||+|.|... ....+++.+...++...+++.|
T Consensus 117 ~~~~kviIIDEa~~l~~~-----a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRH-----SFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHH-----HHHHHHHHHhcCCCCeEEEEEc
Confidence 346789999999988652 2344566665544455555543
No 293
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.73 E-value=0.092 Score=50.41 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCC-ccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPY-RNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~-~~~lv~a~TGsGKTl~ 156 (502)
.+.+|+++-.++.+.+.+.... -.|.. .-+++.||+|+|||..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIV----------------KKGRIPNMLLHSPSPGTGKTTV 59 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHH----------------hcCCCCeEEEeeCcCCCCHHHH
Confidence 3567888888888777765411 12321 3455589999999986
No 294
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.096 Score=54.45 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++||||+|+|... ..+.+++.+...++...+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~-----a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-----AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-----HHHHHHHHHHcCCCCeEEEEEe
Confidence 457899999999988752 2445566665544444444443
No 295
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.078 Score=54.78 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=16.8
Q ss_pred ccEEEECcCCCcchhHhHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~i 161 (502)
..++++||.|+|||.++.+.+
T Consensus 38 HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467999999999998755443
No 296
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.72 E-value=0.014 Score=55.36 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=40.8
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
.++.|...+..++... .+++++|+||||||.. +-.++..+.......+++++-.+.||
T Consensus 129 ~~~~~~~~L~~~v~~~-~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSR-LNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcC-CeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCccc
Confidence 4567777776666653 7999999999999986 45555555332344577777777776
No 297
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.72 E-value=0.061 Score=45.83 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=29.0
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecC
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATF 292 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~ 292 (502)
...+++|+||||.|... ..+.+++.+...+.+..++++|...
T Consensus 101 ~~~KviiI~~ad~l~~~-----a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-----AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-----HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-----HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56899999999998763 3566677776666577666666554
No 298
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.069 Score=54.19 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=31.0
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHhHHHH
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~l~~i 161 (502)
.+.+|.++--.+.+++.|... +..+. ...++++||.|+|||.++-+.+
T Consensus 16 RP~~f~dliGq~~vv~~L~~a----------------i~~~ri~~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYT----------------ILNDRLAGGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHH----------------HHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 345677776666666666431 11221 2579999999999999755433
No 299
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.70 E-value=0.049 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.6
Q ss_pred CccEEEECcCCCcchhHhHHHHHhcc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
..++++.||+|+|||.+. -.++..+
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 368999999999999863 3444443
No 300
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.037 Score=50.95 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=31.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (502)
.++++.|++|+|||..+ .++...+.. .+ .-++++++.+|+.++...+.
T Consensus 106 ~nl~l~G~~G~GKThLa-~Ai~~~l~~--~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 106 ENLVLLGPPGVGKTHLA-IAIGNELLK--AG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CcEEEECCCCCcHHHHH-HHHHHHHHH--cC-CeEEEEEHHHHHHHHHHHHh
Confidence 89999999999999863 344444432 23 34555566677777665443
No 301
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.081 Score=54.90 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=25.6
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
...++++||||+|+|... ..+.+++.+...+....+|+.+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~-----a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNT-----AFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHH-----HHHHHHHhcccCCCCeEEEEEE
Confidence 346899999999998763 2445566665544444544443
No 302
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.69 E-value=0.027 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=18.8
Q ss_pred CCCCccEEEECcCCCcchhHhHH
Q 010762 137 TPPYRNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~~l~ 159 (502)
.|+-.++++.||+|+|||.+...
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILC 67 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHH
Confidence 46567999999999999998443
No 303
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.11 Score=53.88 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHhHHHH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~l~~i 161 (502)
+.+|+++--.+.+.+.|.... ..+. ++-.+++||.|+|||.++-+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i----------------~~~~~~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAI----------------KQGKISHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHH----------------HcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 456777766677776665411 1111 2568899999999998765543
No 304
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.66 E-value=0.021 Score=52.36 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=37.9
Q ss_pred CCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC
Q 010762 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (502)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~ 168 (502)
+..+.+|+.+++++-+.+-+.. .. .=++|.||||||||.. +.+++.++...
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~-------------------~~--GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES-------------------PR--GLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC-------------------CC--ceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3567789999998887773322 11 4689999999999987 67788777544
No 305
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.64 E-value=0.047 Score=64.48 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=47.3
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhH---HHHHhccCCCCCCCeEEEecCcHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFV---LGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l---~~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (502)
.+++.|+.|+..++.+..+-++|.|..|+|||.... -++...+. ..+..++.++||-..+..+.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~--~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE--SEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH--hcCCeEEEEeChHHHHHHHH
Confidence 589999999999987755778999999999998741 22333322 23567888999977766653
No 306
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.12 Score=53.38 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=17.2
Q ss_pred ccEEEECcCCCcchhHhHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~i 161 (502)
..+|+.||.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568899999999999865544
No 307
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.62 E-value=0.1 Score=51.03 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=63.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
.-+++.||+|+|||....-.+..... ..+.++.++. +.|..+.+ .++.++...++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~--~~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~---------------- 282 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFL--HMGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPF---------------- 282 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEecccchhhhHHH---HHHHHHHhcCCCe----------------
Confidence 45889999999999975444332211 1233454444 33454443 3444443333211
Q ss_pred CCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh-hHH
Q 010762 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE-TVK 297 (502)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~-~~~ 297 (502)
+.+..+..+...+. -..+++|++|=+-+...+......+..++.......+.-.++++|||... .+.
T Consensus 283 -------~~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 283 -------YPVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred -------eehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 11112333344333 24578899998765432211222333333333221123467889999876 444
Q ss_pred HHHH
Q 010762 298 NFVT 301 (502)
Q Consensus 298 ~~~~ 301 (502)
..+.
T Consensus 351 ~~~~ 354 (432)
T PRK12724 351 TVLK 354 (432)
T ss_pred HHHH
Confidence 4333
No 308
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.078 Score=55.22 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=24.7
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEE
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLF 288 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~ 288 (502)
...+++||||+|+|... ..+.+++.+...++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-----a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-----SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-----HHHHHHHHHHcCCCCeEEEEe
Confidence 46889999999988752 345566666554444444443
No 309
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.61 E-value=0.015 Score=55.35 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=39.5
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
+++.|...+..+..+ +++++++|+||||||.. +-.++..+.......+++++-.+.|+
T Consensus 133 ~~~~~~~~L~~~v~~-~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRA-HRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHc-CCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 456777777766554 38999999999999964 45555543222334577777777776
No 310
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.57 E-value=0.058 Score=54.53 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=31.1
Q ss_pred CCCCccCCCCCHHHHHHHHhh--CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~--~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|++++=....++.+... +.+..|--+....++. .+.+++.||+|+|||+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~-----p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKP-----PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC-----CcceEEECCCCCcHHHH
Confidence 355788876334444444331 2333333333333321 26799999999999985
No 311
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.55 E-value=0.17 Score=41.13 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.4
Q ss_pred ceEEEEEeCchhhhcc
Q 010762 247 RLKILVYDEADHMLDE 262 (502)
Q Consensus 247 ~~~~lVlDEah~l~~~ 262 (502)
...+|++||+|.+...
T Consensus 58 ~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPK 73 (132)
T ss_dssp TSEEEEEETGGGTSHH
T ss_pred cceeeeeccchhcccc
Confidence 3579999999998874
No 312
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.091 Score=50.65 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHH-HHHHHHHHHHhhcccCceeeEeecCCCCCcccc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTREL-AIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI 216 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~L-a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (502)
++.+++.||+|+|||....--+.. +.. .+.++.+++ |.|.- +.|| +.++...++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~--~g~~V~lItaDtyR~gAveQL----k~yae~lgvp--------------- 263 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK--QNRTVGFITTDTFRSGAVEQF----QGYADKLDVE--------------- 263 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH--cCCeEEEEeCCccCccHHHHH----HHHhhcCCCC---------------
Confidence 378999999999999864433322 221 233455444 33432 3343 3333332221
Q ss_pred cCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC
Q 010762 217 SKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (502)
Q Consensus 217 ~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~ 293 (502)
-....+|..+.+.+..-. ...++++|++|=+-+.-.+ ...+..+-.......+..-++++|||..
T Consensus 264 --------v~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d---~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 264 --------LIVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLA---EESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred --------EEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccC---HHHHHHHHHHhhccCCceEEEECCCccc
Confidence 122346777766554311 1245789999998764322 2222332222222222344667788655
No 313
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.1 Score=54.31 Aligned_cols=46 Identities=24% Similarity=0.215 Sum_probs=29.8
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHhHHH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVLG 160 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~l~~ 160 (502)
+.+|+++--...+++.|... +-.+. .+.+|++||.|+|||....+.
T Consensus 12 P~tFddIIGQe~vv~~L~~a----------------i~~~rl~Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNA----------------LDEGRLHHAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCcHHHHHHHH
Confidence 45677776666666666541 11121 256899999999999875443
No 314
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.12 Score=49.75 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=25.0
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
...+++|+||||.|.. +....+++.+...+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~-----~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTE-----DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhH-----HHHHHHHHHhccCCCCeEEEEEc
Confidence 6789999999999876 33444555555444444444444
No 315
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.53 E-value=0.024 Score=53.59 Aligned_cols=58 Identities=28% Similarity=0.300 Sum_probs=39.4
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
+++-|...+..++.+ .++++++|+||||||.. +-.++..+.......+++++-.+.|+
T Consensus 117 ~~~~~~~~L~~~v~~-~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLA-RKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHc-CCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhh
Confidence 345555556555554 28999999999999986 44555555433335578888888776
No 316
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.49 E-value=0.1 Score=57.02 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=77.1
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
.+..+....|.......+......+.+++|.+||..-|...++.++. .++.+..++|..+..++..+++.+..|..
T Consensus 476 Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~ 555 (926)
T TIGR00580 476 LVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKI 555 (926)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCc
Confidence 44445556666554433444444668899999999999999887765 36788999999999999999999999999
Q ss_pred eEEEEcC-ccccCCCCCCCCEEEE
Q 010762 402 QVLISTD-VLARGFDQQQVNLIVN 424 (502)
Q Consensus 402 ~iLv~T~-~~~~Gldi~~v~~VI~ 424 (502)
.|+|+|. .+...+.+.++.+||.
T Consensus 556 dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 556 DILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred eEEEchHHHhhCCCCcccCCEEEe
Confidence 9999996 4556678888998885
No 317
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.46 E-value=0.069 Score=56.86 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=53.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCC-----CcEEE-ecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFG-----YEVTT-IMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~~~-l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
.++++++.+||..-+...++.|.... ..+.. +||.|+..+++.++++|.+|+.+|||+|..+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 56899999999999999988887652 44433 9999999999999999999999999999653
No 318
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.43 E-value=0.045 Score=58.95 Aligned_cols=70 Identities=21% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
.++|-|+.++... . ..++|.|..|||||.+..--+...+.. .....++|+++-|+..|..+.+.+.++.+
T Consensus 4 ~Ln~~Q~~av~~~-~---g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKTT-E---GPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhCC-C---CCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 5889999998753 2 579999999999999855555444432 23445899999999999999998887654
No 319
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.17 Score=52.13 Aligned_cols=47 Identities=21% Similarity=0.142 Sum_probs=29.4
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHhHHHH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~l~~i 161 (502)
+.+|.++--++.+++.|... +..+. ++.+++.||.|+|||..+...+
T Consensus 12 P~~F~dIIGQe~iv~~L~~a----------------I~~~rl~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNA----------------ILNNKLTHAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHH----------------HHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 45666665566666655431 11121 2568999999999999755543
No 320
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.41 E-value=0.3 Score=46.88 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999864
No 321
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.39 E-value=0.03 Score=54.37 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=26.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
..++++||||||||.. +..++..+.......+++.+=...|+
T Consensus 150 GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 150 GLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYEDPIEY 191 (372)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEecCchh
Confidence 5789999999999986 45566655432233455555443343
No 322
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.37 E-value=0.05 Score=47.62 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=32.7
Q ss_pred EEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 143 ~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
+++.|++|+|||...+-.+...+. .+..+++++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999975544444432 35567777643 5566776666655
No 323
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.34 E-value=0.05 Score=51.12 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=45.0
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La 184 (502)
..|...++-|...+..+..+. .+++++|.||||||.. +-.+...+. ...+++.+--|.||-
T Consensus 153 i~~gt~~~~~a~~L~~av~~r-~NILisGGTGSGKTTl-LNal~~~i~---~~eRvItiEDtaELq 213 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIR-CNILISGGTGSGKTTL-LNALSGFID---SDERVITIEDTAELQ 213 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhc-eeEEEeCCCCCCHHHH-HHHHHhcCC---CcccEEEEeehhhhc
Confidence 356788899999998888772 5999999999999984 333333332 233888888888874
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.34 E-value=0.057 Score=50.71 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.6
Q ss_pred ccEEEECcCCCcchhHhH
Q 010762 141 RNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l 158 (502)
+.++++||||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 689999999999998643
No 325
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.21 Score=49.53 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=25.5
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
+...+++|+||+|.|... ....+++.+...++...+| +.++
T Consensus 125 ~~~~kvvIIdea~~l~~~-----~~~~LLk~LEep~~~t~~I-l~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA-----AFNAFLKTLEEPPPHAIFI-FATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHH-----HHHHHHHHHhcCCCCeEEE-EEeC
Confidence 567889999999998752 2445566665543333334 4444
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.29 E-value=0.091 Score=52.23 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=62.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec-Cc-HHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC-PT-RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~-Pt-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
..++++|++|+|||.+..-.+ ..+.. .+.++++++ .+ |.-+ .++++.++...++.+ +.....
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~--~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~---~~~~~~------- 159 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKK--KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPF---YGDPDN------- 159 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHH--cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcE---EecCCc-------
Confidence 689999999999998754333 23332 234555554 32 3322 233444443333321 100000
Q ss_pred CCCCCCeEEEeCchH-HHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHH
Q 010762 219 RPPVTAQVVIGTPGT-IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 297 (502)
Q Consensus 219 ~~~~~~~Ilv~Tp~~-l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~ 297 (502)
..|.. +.+.+.. +...++||+|.+-++..+....+++..+..... +..-+++++||...+..
T Consensus 160 ----------~d~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~---pdevlLVvda~~gq~av 222 (437)
T PRK00771 160 ----------KDAVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVK---PDEVLLVIDATIGQQAK 222 (437)
T ss_pred ----------cCHHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhc---ccceeEEEeccccHHHH
Confidence 01111 2233332 222378999999654332122223333333332 24567888888765554
Q ss_pred HHHHHH
Q 010762 298 NFVTRI 303 (502)
Q Consensus 298 ~~~~~~ 303 (502)
+.+..+
T Consensus 223 ~~a~~F 228 (437)
T PRK00771 223 NQAKAF 228 (437)
T ss_pred HHHHHH
Confidence 444443
No 327
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.24 E-value=0.061 Score=50.28 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=24.7
Q ss_pred CcHHHHhhhhhhc---CCCCccEEEECcCCCcchhHhHHHHHhcc
Q 010762 124 PSKIQAISLPMIL---TPPYRNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 124 p~~~Q~~~i~~il---~~~~~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
+++.+..++..+. ......+++.|++|+|||...- .++..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~-~l~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR-NLLKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH-HHHHhc
Confidence 4455555554432 2212468999999999998743 334443
No 328
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.16 Score=52.11 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++||||+|.|... ..+.+++.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~-----a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS-----AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH-----HHHHHHHHHhCCCCCEEEEEEe
Confidence 456789999999988752 2455666666655566666554
No 329
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.23 E-value=0.33 Score=49.97 Aligned_cols=132 Identities=15% Similarity=0.206 Sum_probs=79.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc-C-ceeeEeecCCCCCcccccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT-G-ITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 218 (502)
+-.++..|--.|||.... +++..+.....+.++++++|.+..++.+++.+..+.... . ..+....+ . ... -.
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e---~I~-i~ 328 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E---TIS-FS 328 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c---EEE-EE
Confidence 778888899999999744 666555444457799999999999999999887764421 1 11111111 1 000 00
Q ss_pred CCCC-CCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 219 RPPV-TAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 219 ~~~~-~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
...+ ..-|.+++- -..+...-..++++|+|||+.+.+ +.+..++-.+... +++++.+|.|
T Consensus 329 f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~-----~al~~ilp~l~~~--n~k~I~ISS~ 389 (738)
T PHA03368 329 FPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP-----DAVQTIMGFLNQT--NCKIIFVSST 389 (738)
T ss_pred ecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH-----HHHHHHHHHHhcc--CccEEEEecC
Confidence 0101 124444421 112334445789999999998876 2344555444332 6788888887
No 330
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.16 Score=53.22 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCC-CCccEEEECcCCCcchhHhHHHH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~l~~i 161 (502)
..+|.++--+..+.+.|.... ..+ -...+|+.||.|+|||..+...+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l----------------~~~rl~~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNAL----------------ISNRIAPAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred CCcHhhccChHHHHHHHHHHH----------------HcCCCCceEEEECCCCCChHHHHHHHH
Confidence 356777766666666665411 111 12568999999999998754433
No 331
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.15 E-value=0.04 Score=62.67 Aligned_cols=123 Identities=14% Similarity=0.103 Sum_probs=75.8
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceee
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE 203 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~ 203 (502)
.|+-|.++|.. .+ ++++|.|..|||||.+..--++..+.......++|+|+=|+..|..+.+.+.+.....-..
T Consensus 2 ~t~~Q~~ai~~--~~--~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~-- 75 (1232)
T TIGR02785 2 WTDEQWQAIYT--RG--QNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ-- 75 (1232)
T ss_pred CCHHHHHHHhC--CC--CCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc--
Confidence 58899999973 45 8999999999999998666666666544334579999999999999888877644321000
Q ss_pred EeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCC--ceEEEEEeCchh
Q 010762 204 CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFS--RLKILVYDEADH 258 (502)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~--~~~~lVlDEah~ 258 (502)
.. ....+.+....-...-|+|-..|...+-+.....- +..+=|.||...
T Consensus 76 ----~p--~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ----EP--NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ----Cc--hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 00001111111235678898888644433222111 224456888775
No 332
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.14 E-value=0.17 Score=49.00 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=14.9
Q ss_pred cEEEECcCCCcchhHhH
Q 010762 142 NLIAQARNGSGKTTCFV 158 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~l 158 (502)
.+++.||+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998743
No 333
>PRK04195 replication factor C large subunit; Provisional
Probab=95.14 E-value=0.18 Score=51.50 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHh
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~ 157 (502)
.+.+|+++-.++...+.+..- +.....|. .+.+++.||+|+|||...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~-------------l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREW-------------IESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHH-------------HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 355677777777777666541 11111221 378999999999999863
No 334
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.12 E-value=0.026 Score=55.83 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=34.6
Q ss_pred cHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC
Q 010762 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (502)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~ 168 (502)
++.|...+..++..++.=+++.||||||||.. +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 47777788888877667899999999999998 77777776544
No 335
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.13 Score=49.44 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=69.3
Q ss_pred CcHHHHhhhhhhc----CCC-CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 124 PSKIQAISLPMIL----TPP-YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 124 p~~~Q~~~i~~il----~~~-~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.+|||...|..+. +|. +.-.++.||.|+||+..+...+-..+.....+...-=.|+. ++.+....
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~s----------C~~~~~g~ 72 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRG----------CQLMQAGT 72 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHH----------HHHHHcCC
Confidence 5677777776664 232 35788999999999987544333222222111111012222 22222121
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
.-.+..+....+ +..|-|-.-..+.+.+.... .....+++|+|+||.|... ..+.+++.+..
T Consensus 73 HPD~~~i~p~~~------------~~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~~-----AaNaLLKtLEE 134 (334)
T PRK07993 73 HPDYYTLTPEKG------------KSSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTDA-----AANALLKTLEE 134 (334)
T ss_pred CCCEEEEecccc------------cccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCHH-----HHHHHHHHhcC
Confidence 112212211100 01122222222233222222 2457899999999999863 35677787877
Q ss_pred cCCCeeEEEEeec
Q 010762 279 SSGHCQVLLFSAT 291 (502)
Q Consensus 279 ~~~~~q~v~~SAT 291 (502)
.+++.-++++|.-
T Consensus 135 Pp~~t~fiL~t~~ 147 (334)
T PRK07993 135 PPENTWFFLACRE 147 (334)
T ss_pred CCCCeEEEEEECC
Confidence 5555555555544
No 336
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.09 E-value=0.21 Score=47.60 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
....+++|+|+||.|... ..+.+++.+...+++..+++.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~-----AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-----AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHH-----HHHHHHHHhcCCCCCeEEEEEECC
Confidence 356789999999998862 356677777775555555554443
No 337
>PF13173 AAA_14: AAA domain
Probab=95.05 E-value=0.17 Score=41.11 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-+++.||.|+|||..
T Consensus 3 ~~~~l~G~R~vGKTtl 18 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTL 18 (128)
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999986
No 338
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.14 Score=51.60 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=39.3
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHh-hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 91 TGDTPYTSATTFEDLNLSPELLKGLYV-EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~-~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+...+.+..+|+++|=-...+..|.. -..+..|-.++...+. +.+.++++||+|+|||..
T Consensus 178 ~~~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~-----PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 178 EGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVR-----PPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred cccCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCC-----CCCceeeeCCCCccHHHH
Confidence 344555556789999744444443332 1235667777665442 238899999999999984
No 339
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.083 Score=55.52 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=82.8
Q ss_pred EEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHHHcCCCeE
Q 010762 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (502)
Q Consensus 325 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~i 403 (502)
+...-.....|...+.+.+...+..++.+||.++-+.....+...|.. .|.++..+|+++++.+|...+.+..+|+.+|
T Consensus 220 ~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~v 299 (730)
T COG1198 220 FLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARV 299 (730)
T ss_pred eeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceE
Confidence 334444566788888888888888999999999999999888888864 4899999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEE
Q 010762 404 LISTDVLARGFDQQQVNLIVN 424 (502)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~VI~ 424 (502)
+|.|..+- =.-++++..||.
T Consensus 300 VIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 300 VIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred EEEechhh-cCchhhccEEEE
Confidence 99997754 245667787775
No 340
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=0.24 Score=48.21 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=27.5
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
.....++||||+|.|.. ...+.+++.+...++...++++|..
T Consensus 139 ~~~~kVviIDead~m~~-----~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA-----NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCH-----HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 45678999999998864 3355666767654445555554444
No 341
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.96 E-value=0.047 Score=52.95 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=19.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
..++++||||||||.. +-.++..+.
T Consensus 135 glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 135 GIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 7899999999999986 444555543
No 342
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.2 Score=51.38 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++||||+|+|... ....+++.+...++...+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-----a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-----SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-----HHHHHHHHHhcCCCCceEEEEE
Confidence 456789999999998752 2345555555544444444444
No 343
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.92 E-value=0.098 Score=51.65 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=23.0
Q ss_pred cHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
-......+..+..+ +++++.|++|+|||..+
T Consensus 181 e~~le~l~~~L~~~--~~iil~GppGtGKT~lA 211 (459)
T PRK11331 181 ETTIETILKRLTIK--KNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHHHhcC--CCEEEECCCCCCHHHHH
Confidence 33444455555666 89999999999999864
No 344
>PRK09183 transposase/IS protein; Provisional
Probab=94.91 E-value=0.17 Score=46.78 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=25.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
.++++.||+|+|||........... ..+..++++. ..+|..+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~---~~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV---RAGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH---HcCCeEEEEe-HHHHHHH
Confidence 8999999999999975433222211 1344555543 3345444
No 345
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.90 E-value=0.14 Score=47.53 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=28.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC---C-CCCCeEEEecCcHHHHHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP---N-LKAPQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~---~-~~~~~~lil~Pt~~La~q~~~~~ 191 (502)
.++++.|+||-|||...--..-.+-.. . ..-+-+.+-+|...-..-.+..+
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 689999999999998532222222111 0 11234455566655555555443
No 346
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.16 Score=50.43 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHHHHHcCccCCCceEEEEEeCchhhhcccC------CHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 233 TIKKWMSAKKLGFSRLKILVYDEADHMLDEAG------FRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 233 ~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~------~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
|+.+++.... -...++|.+||.|.+..... ....++.++..+....++--+|++.||
T Consensus 384 RVRdLF~aAk--~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 384 RVRDLFAAAK--ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred HHHHHHHHHH--hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 3455544322 34567899999998765322 233456677777766667789999999
No 347
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=0.26 Score=47.40 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=26.0
Q ss_pred cHHHHhhhhhhcC--CC-CccEEEECcCCCcchhHhHHHH
Q 010762 125 SKIQAISLPMILT--PP-YRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 125 ~~~Q~~~i~~il~--~~-~~~~lv~a~TGsGKTl~~l~~i 161 (502)
+|||...|..+.. +. +.-+++.||.|.||+..+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5777777766643 21 3578899999999998754444
No 348
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.74 E-value=0.14 Score=48.98 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=16.0
Q ss_pred CccEEEECcCCCcchhHhH
Q 010762 140 YRNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l 158 (502)
-.+.|++||+|+|||..+-
T Consensus 48 l~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 48 LHSMILWGPPGTGKTTLAR 66 (436)
T ss_pred CceeEEECCCCCCHHHHHH
Confidence 3589999999999998643
No 349
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.72 E-value=0.18 Score=53.05 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=25.8
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
....+++|+||||.|... ....+++.+...++...+|+ .+|
T Consensus 116 ~g~~KV~IIDEa~~LT~~-----A~NALLKtLEEPP~~tifIL-aTt 156 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-----AFNALLKTLEEPPKHVIFIL-ATT 156 (725)
T ss_pred cCCCEEEEEEChhhCCHH-----HHHHHHHHhhcCCCceEEEE-EcC
Confidence 467889999999988752 34556666655443444444 334
No 350
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.71 E-value=0.16 Score=44.56 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=24.5
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEE
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLF 288 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~ 288 (502)
....+++|+||+|.+... ....+++.+...++..-++++
T Consensus 94 ~~~~kviiide~~~l~~~-----~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-----AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH-----HHHHHHHHhcCCCCCeEEEEE
Confidence 456789999999998752 244556666554434444443
No 351
>PF05729 NACHT: NACHT domain
Probab=94.70 E-value=0.15 Score=43.31 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=17.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhcc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
|-++|.|+.|+|||... .-+...+
T Consensus 1 r~l~I~G~~G~GKStll-~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLL-RKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHH-HHHHHHH
Confidence 34789999999999863 3333333
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.67 E-value=0.26 Score=49.51 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.2
Q ss_pred ccEEEECcCCCcchhHhHH
Q 010762 141 RNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~ 159 (502)
+-+.+.||||+|||.+...
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 7899999999999997443
No 353
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.63 E-value=0.51 Score=48.91 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=50.1
Q ss_pred CCcHHHHhhhhhhcCC-CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 123 KPSKIQAISLPMILTP-PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~-~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.|+|.=.+-|..++.. ..+-.++.+|-|-|||.+..+.+...+.. .+.+++|.+|...-+.++++.+.......
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 3455555555444331 12678889999999999865444433321 35689999999999999998887776533
No 354
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.61 E-value=0.36 Score=47.53 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=26.9
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE 294 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~ 294 (502)
....+++||||+|+|... ..+.+++.+...+++ .++++++|-+.
T Consensus 115 ~~~~kViiIDead~m~~~-----aanaLLk~LEep~~~-~~fIL~a~~~~ 158 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-----AANALLKAVEEPPPR-TVWLLCAPSPE 158 (394)
T ss_pred cCCcEEEEEechhhcCHH-----HHHHHHHHhhcCCCC-CeEEEEECChH
Confidence 356789999999999753 234456666554434 34555555333
No 355
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.60 E-value=0.24 Score=53.40 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=32.3
Q ss_pred CCCccCCCCCHHHHHHHHhhC--CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
..+|.+++-...+.+.|.... .+..|.-++...+. ..+.+++.||+|+|||+..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~-----~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR-----PPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC-----CCceEEEECCCCCCHHHHH
Confidence 457888877777766665421 22223222222111 1267999999999999853
No 356
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.59 E-value=0.25 Score=55.51 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=74.4
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
.+..+....|..............+.+++|.+||..-|..++..|... ++.+..++|..+..++..+++....|..
T Consensus 625 Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~ 704 (1147)
T PRK10689 625 LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKI 704 (1147)
T ss_pred EEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 344455556665433323333346789999999999999998887653 5678899999999999999999999999
Q ss_pred eEEEEcCc-cccCCCCCCCCEEEE
Q 010762 402 QVLISTDV-LARGFDQQQVNLIVN 424 (502)
Q Consensus 402 ~iLv~T~~-~~~Gldi~~v~~VI~ 424 (502)
.|+|+|.. +...+.+.++.++|.
T Consensus 705 dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 705 DILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CEEEECHHHHhCCCCHhhCCEEEE
Confidence 99999964 445567778888774
No 357
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.57 E-value=0.27 Score=46.77 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=29.5
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
....+++|||+||.|.. ...+.+++.+...+++..++++|..
T Consensus 106 ~~~~kV~iI~~ae~m~~-----~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE-----SASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCH-----HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 45689999999999875 3356677777775555555555544
No 358
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.56 E-value=0.1 Score=47.34 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
+..+++.|++|+|||...+-.+.+.+... +.++++++-. +-..++.+.+..++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~e-e~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFE-EPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESS-S-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEec-CCHHHHHHHHHHcC
Confidence 48899999999999987665555554320 4467777733 34466666666543
No 359
>PHA00729 NTP-binding motif containing protein
Probab=94.54 E-value=0.3 Score=43.67 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.++++.|++|+|||..+
T Consensus 18 ~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57999999999999753
No 360
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.53 E-value=0.035 Score=49.15 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.+++++||+|.|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 47999999999999853
No 361
>PRK10867 signal recognition particle protein; Provisional
Probab=94.49 E-value=0.36 Score=47.99 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=24.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELA 184 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La 184 (502)
.-+++++++|+|||.+..-.+. ++... .+.+++++. +.|..+
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~-~l~~~-~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAK-YLKKK-KKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHH-HHHHh-cCCcEEEEEccccchHH
Confidence 6789999999999987443333 22221 244555554 444443
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.39 E-value=0.28 Score=48.48 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=26.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQN 187 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~q~ 187 (502)
.-++++|++|+|||.+..--+. .+. ..+.++++++ |.|.-+.++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~-~l~--~~G~kV~lV~~D~~R~aA~eQ 146 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY-YYQ--RKGFKPCLVCADTFRAGAFDQ 146 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHH--HCCCCEEEEcCcccchhHHHH
Confidence 5788999999999976433222 222 2244666665 445444443
No 363
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.35 Score=50.53 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
+...++|||||+|.|... ....+++.+...++... +++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~-----a~naLLk~LEepp~~tv-~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTA-----AFNALLKTLEEPPPHAI-FILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHH-----HHHHHHHHHhcCCCCeE-EEEEeC
Confidence 467899999999988652 24455666655443433 334343
No 364
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.36 E-value=0.36 Score=47.17 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEE
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLL 287 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~ 287 (502)
+...++||+||+|.+... ....+++.+...++...+|+
T Consensus 115 ~~~~~vviidea~~l~~~-----~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKS-----AFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred cCCceEEEEeChhhcCHH-----HHHHHHHHHhCCccceeEEE
Confidence 456789999999987642 24455666644333333333
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.35 E-value=0.44 Score=47.57 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999864
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.29 E-value=0.71 Score=43.06 Aligned_cols=135 Identities=17% Similarity=0.227 Sum_probs=66.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
+-+++.+++|+|||.+..-.+.. +. ..+.+++++. +.|.-+.+ .+..|+...++.+. .....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~--~~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~--~~~~~-------- 136 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LK--KQGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVI--KQKEG-------- 136 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HH--hcCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEE--eCCCC--------
Confidence 67888899999999864443322 22 2345666665 33443322 33333333333211 11100
Q ss_pred CCCCCCeEEEeCchHH-HHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhh---hcCCCeeEEEEeecCCh
Q 010762 219 RPPVTAQVVIGTPGTI-KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE---RSSGHCQVLLFSATFNE 294 (502)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l-~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~---~~~~~~q~v~~SAT~~~ 294 (502)
. .|... .+.+.. ....++++|++|=+-++..+.....++..+..... ...+.-.+++++||...
T Consensus 137 -----~-----dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 137 -----A-----DPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred -----C-----CHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 0 12121 122211 11355788999998876533223334444444443 11235568899998665
Q ss_pred hHHHHHHHH
Q 010762 295 TVKNFVTRI 303 (502)
Q Consensus 295 ~~~~~~~~~ 303 (502)
+....+..+
T Consensus 205 ~~~~~~~~f 213 (272)
T TIGR00064 205 NALEQAKVF 213 (272)
T ss_pred HHHHHHHHH
Confidence 444444443
No 367
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.28 E-value=0.39 Score=47.36 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=33.9
Q ss_pred CCCCccCCCCCHHHHHHHHhh--CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 98 SATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~--~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
+..+|.+++-.....+.+... +.+..|.-++...++ . .+.+++.||+|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~---~--pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID---P--PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC---C--CceEEEECCCCCCHHHHH
Confidence 455788877666655555431 233444444433332 1 278999999999999963
No 368
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.27 E-value=0.3 Score=51.96 Aligned_cols=17 Identities=41% Similarity=0.399 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.++++.||+|+|||...
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999864
No 369
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.26 Score=44.27 Aligned_cols=106 Identities=22% Similarity=0.206 Sum_probs=61.5
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
.+.++..+|+|+|||+.+ |+-|.|....|-++++..-
T Consensus 205 PKGvLmYGPPGTGKTlmA-----------------------RAcAaqT~aTFLKLAgPQL-------------------- 241 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMA-----------------------RACAAQTNATFLKLAGPQL-------------------- 241 (424)
T ss_pred CCceEeeCCCCCcHHHHH-----------------------HHHHHhccchHHHhcchHH--------------------
Confidence 378999999999999863 3445555555555543311
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc------cCC---HHHHHHHHHHhhhcCCCeeEEEEee
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE------AGF---RDDSLRIMKDIERSSGHCQVLLFSA 290 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~------~~~---~~~~~~i~~~l~~~~~~~q~v~~SA 290 (502)
.++.|+.-.+|.+-.-. -..-....+|.+||.|.+... .|- ...+.+++..+....++-++=++.|
T Consensus 242 ----VQMfIGdGAkLVRDAFa-LAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA 316 (424)
T KOG0652|consen 242 ----VQMFIGDGAKLVRDAFA-LAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 316 (424)
T ss_pred ----HhhhhcchHHHHHHHHH-HhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence 23344444444332111 001234567999999987531 122 2345566667766666667777778
Q ss_pred cCC
Q 010762 291 TFN 293 (502)
Q Consensus 291 T~~ 293 (502)
|-.
T Consensus 317 TNR 319 (424)
T KOG0652|consen 317 TNR 319 (424)
T ss_pred ccc
Confidence 843
No 370
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.17 E-value=0.34 Score=46.00 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=18.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
+.+++.|++|+|||.. +.++...+.
T Consensus 157 ~gl~L~G~~G~GKThL-a~Aia~~l~ 181 (306)
T PRK08939 157 KGLYLYGDFGVGKSYL-LAAIANELA 181 (306)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 6899999999999986 334444443
No 371
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.44 Score=46.80 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHhH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~l 158 (502)
+.+|+++--++.+.+.+... ++ .|. ...++++||.|+|||....
T Consensus 13 P~~~~~iig~~~~~~~l~~~--------i~--------~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNA--------IE--------NNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHH--------HH--------cCCCCeEEEEECCCCCCHHHHHH
Confidence 45777777777776666541 11 121 2579999999999997643
No 372
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.53 Score=40.63 Aligned_cols=92 Identities=17% Similarity=0.080 Sum_probs=52.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+=.++.+|+.||||...+--+ .++. ..+.++++..|...-- + +........+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~-~~~~--~~g~~v~vfkp~iD~R---------~----~~~~V~Sr~G------------ 56 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRA-RRYK--EAGMKVLVFKPAIDTR---------Y----GVGKVSSRIG------------ 56 (201)
T ss_pred EEEEEEccCcCcchHHHHHHH-HHHH--HcCCeEEEEecccccc---------c----ccceeeeccC------------
Confidence 557899999999999633322 2221 2455788888753210 0 0100000001
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhc
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~ 261 (502)
.....++|-.+..+.+.+....... .+++|.+|||+-+..
T Consensus 57 ~~~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~ 96 (201)
T COG1435 57 LSSEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDE 96 (201)
T ss_pred CcccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCH
Confidence 1123577777778888777643322 278999999995543
No 373
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.15 E-value=0.25 Score=51.52 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=26.0
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
+...+++||||+|.|... ....+++.+...++..-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~-----a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTA-----AFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHH-----HHHHHHHHHhCCCCCeEEEEEe
Confidence 567889999999998752 2455666666544444444444
No 374
>PTZ00293 thymidine kinase; Provisional
Probab=94.14 E-value=0.45 Score=42.05 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=25.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
+=-++.||++||||.-.+- .+.++. ..+.+++++-|..
T Consensus 5 ~i~vi~GpMfSGKTteLLr-~i~~y~--~ag~kv~~~kp~~ 42 (211)
T PTZ00293 5 TISVIIGPMFSGKTTELMR-LVKRFT--YSEKKCVVIKYSK 42 (211)
T ss_pred EEEEEECCCCChHHHHHHH-HHHHHH--HcCCceEEEEecc
Confidence 6678899999999976433 333332 2345688888863
No 375
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.04 E-value=0.4 Score=43.20 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=19.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.++++-|||||+..- +++..+.
T Consensus 52 g~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 52 GILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred ceEEEEecCCCchhHHHH-HHHHhcC
Confidence 488999999999999855 4554443
No 376
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.04 E-value=0.098 Score=53.04 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=26.4
Q ss_pred HHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC
Q 010762 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
+-|...+..++...+.-++++||||||||.. +..++..+.
T Consensus 228 ~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 228 PELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 4444455445544324588999999999997 455666664
No 377
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.03 E-value=0.02 Score=47.40 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.5
Q ss_pred cEEEECcCCCcchhH
Q 010762 142 NLIAQARNGSGKTTC 156 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (502)
++++.||+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999985
No 378
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.02 E-value=0.42 Score=49.47 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
....+++|+||+|.|... ....+++.+...++... ++|.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~-----a~naLLK~LEepp~~~v-fI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS-----AFNALLKTIEEPPPYIV-FIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHH-----HHHHHHHhhccCCCCEE-EEEecC
Confidence 467889999999988652 34455666655333333 334334
No 379
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.00 E-value=0.23 Score=48.73 Aligned_cols=80 Identities=15% Similarity=0.027 Sum_probs=54.6
Q ss_pred HHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH
Q 010762 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (502)
Q Consensus 110 ~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (502)
.+++.+.+ .+-.+-..|.++.-..-.| .- .|.|-.|||||...++-+ ..+.......+++|.+=|+.|+.++..
T Consensus 151 a~l~~ies--kIanfD~~Q~kaa~~~~~G--~q-rIrGLAGSGKT~~La~Ka-a~lh~knPd~~I~~Tfftk~L~s~~r~ 224 (660)
T COG3972 151 ALLDTIES--KIANFDTDQTKAAFQSGFG--KQ-RIRGLAGSGKTELLAHKA-AELHSKNPDSRIAFTFFTKILASTMRT 224 (660)
T ss_pred HHHHHHHH--HHhcccchhheeeeecCCc--hh-hhhcccCCCchhHHHHHH-HHHhcCCCCceEEEEeehHHHHHHHHH
Confidence 44555543 3444556787766555555 33 678889999998744433 344444556689999999999999988
Q ss_pred HHHHhh
Q 010762 190 VLRKMG 195 (502)
Q Consensus 190 ~~~~~~ 195 (502)
.+.++.
T Consensus 225 lv~~F~ 230 (660)
T COG3972 225 LVPEFF 230 (660)
T ss_pred HHHHHH
Confidence 877765
No 380
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.99 E-value=0.59 Score=47.60 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=81.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH-hhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK-MGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+-.+..-|---|||+. +.|++..+.....+-++.+++.-|..++-+++++.. +-.+.+-......
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~------------- 268 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN------------- 268 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-------------
Confidence 6677778899999996 889999888878888999999999888887775542 2222221100000
Q ss_pred CCCCCeEEEeCchHH-----HHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 220 PPVTAQVVIGTPGTI-----KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l-----~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
.+--|.+.-|+.= ......+.+.-.++.++++||||-+.. +.+..|+..+.. .++++|..|.|
T Consensus 269 --k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~-----~a~~tilgfm~q--~~~KiIfISS~ 336 (668)
T PHA03372 269 --KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK-----DAFNTILGFLAQ--NTTKIIFISST 336 (668)
T ss_pred --cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH-----HHHHHhhhhhcc--cCceEEEEeCC
Confidence 0112333333321 111233455566789999999997654 345666666643 36678888877
No 381
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.96 E-value=0.41 Score=47.54 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=16.8
Q ss_pred ccEEEECcCCCcchhHhHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~i 161 (502)
..+++++++|+|||.+..--+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 578999999999998754433
No 382
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.94 E-value=0.47 Score=45.98 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=26.0
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++||||||.|... ..+.+++.+...+.+..++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~-----aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-----AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH-----HHHHHHHHHhcCCCCceEEEEE
Confidence 346789999999998652 2445666665544455555554
No 383
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.94 E-value=0.39 Score=47.46 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=29.6
Q ss_pred CCCccCCCCCHHHHHHHHhh--CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 99 ATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~--~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
..+|++++-.....+.+... +.+..|..++...++ ..+.+++.||+|+|||+.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-----~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-----PPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-----CCCceEEECCCCCChHHH
Confidence 44566666555555555431 122223222222111 136799999999999986
No 384
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.84 E-value=0.39 Score=48.31 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=33.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
.-+++.|++|+|||...+..+.... ..+.+++++.-. +-..|+.....+++
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 7899999999999986444433322 134578888743 44566666555543
No 385
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.82 E-value=0.091 Score=50.53 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=29.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La 184 (502)
.+++++|+||||||.. +-.++..+. ...+++.+-.+.||.
T Consensus 163 ~nilI~G~tGSGKTTl-l~aLl~~i~---~~~rivtiEd~~El~ 202 (344)
T PRK13851 163 LTMLLCGPTGSGKTTM-SKTLISAIP---PQERLITIEDTLELV 202 (344)
T ss_pred CeEEEECCCCccHHHH-HHHHHcccC---CCCCEEEECCCcccc
Confidence 8999999999999985 455555553 234677777777763
No 386
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.8 Score=46.55 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=24.5
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
....+++|+||||.|... ....+++.+...++.. ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~-----a~naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE-----AFNALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHH-----HHHHHHHHHhcCCCCe-EEEEEEC
Confidence 457889999999988652 2344555555443333 3444334
No 387
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.72 E-value=1.8 Score=41.18 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=28.4
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (502)
-..+|+++|+|+|||..+-+.+-.. .....+.+=+..|.+-...+...|.
T Consensus 162 ipSmIlWGppG~GKTtlArlia~ts---k~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTS---KKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhc---CCCceEEEEEeccccchHHHHHHHH
Confidence 3579999999999998543322211 1122345555555555554444443
No 388
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.70 E-value=0.12 Score=47.94 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=30.7
Q ss_pred HHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHH
Q 010762 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (502)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~ 182 (502)
+-|...+..++......+++.|+||||||.. +..++..+.. ...+++.+--..|
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~--~~~~iitiEdp~E 119 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNT--PEKNIITVEDPVE 119 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCC--CCCeEEEECCCce
Confidence 3344444444433225799999999999986 4445555532 2234555543333
No 389
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.68 E-value=0.78 Score=43.80 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=34.2
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhh---hcCCCeeEEEEeecCChhHHHHHHHH
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE---RSSGHCQVLLFSATFNETVKNFVTRI 303 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~---~~~~~~q~v~~SAT~~~~~~~~~~~~ 303 (502)
..++++||+|=+-++-......+++..+.+.+. ...+...+++++||........+..+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 356789999999876543333344555544332 22334568999999654433333333
No 390
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.56 E-value=0.81 Score=46.13 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=29.6
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHhHHHH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~l~~i 161 (502)
+.+|+++--++.++..|.... -.|. .+.+++.||.|+|||.++...+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i----------------~~~~i~ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNAL----------------RFNRAAHAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHH----------------HcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 456777755666666555411 1121 2568999999999998754433
No 391
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.46 E-value=0.83 Score=41.46 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=32.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
..+++.+++|+|||...+-.+...+. ++.++++++.. +-..+..+.+..++
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 78999999999999874443333322 34567888743 33355555554443
No 392
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.46 E-value=1 Score=43.03 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=35.2
Q ss_pred eEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEee
Q 010762 225 QVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSA 290 (502)
Q Consensus 225 ~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SA 290 (502)
.|-|-....+.+.+..... ....+++|+|+||.|.. ...+.+++.+...+ +..++++|.
T Consensus 103 ~I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~-----~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNE-----AAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCH-----HHHHHHHHHHhCCC-CCeEEEEEC
Confidence 3444444445555544433 45789999999999875 23456666666544 554444443
No 393
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.44 E-value=0.49 Score=47.53 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=81.8
Q ss_pred CcHHHHhhhhhhcC------C--CCccEEEECcCCCcchhHhH-HHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 124 PSKIQAISLPMILT------P--PYRNLIAQARNGSGKTTCFV-LGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 124 p~~~Q~~~i~~il~------~--~~~~~lv~a~TGsGKTl~~l-~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
+-|+|.-.+-.++. | .-+-.+|..|-+-|||.... +.....+.....+....|++|+.+-+.+.+..++..
T Consensus 62 l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~m 141 (546)
T COG4626 62 LEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDM 141 (546)
T ss_pred cchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHH
Confidence 56888888877762 1 12357888899999997543 222222333356678999999999999988877765
Q ss_pred hcccC-ceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc--CccCCCceEEEEEeCchhhhcccCCHHHHHH
Q 010762 195 GKHTG-ITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA--KKLGFSRLKILVYDEADHMLDEAGFRDDSLR 271 (502)
Q Consensus 195 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~ 271 (502)
..... +...+-+... ...|.+.--......+.. +..+-.+..+.|+||.|..... .+.+..
T Consensus 142 v~~~~~l~~~~~~q~~-------------s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~---~~~~~~ 205 (546)
T COG4626 142 VKRDDDLRDLCNVQTH-------------SRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ---EDMYSE 205 (546)
T ss_pred HHhCcchhhhhccccc-------------eeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH---HHHHHH
Confidence 43322 1100000000 001211111111222222 2334456779999999976642 133333
Q ss_pred HHHHhhhcCCCeeEEEEee
Q 010762 272 IMKDIERSSGHCQVLLFSA 290 (502)
Q Consensus 272 i~~~l~~~~~~~q~v~~SA 290 (502)
+..-+. .+++.+++..|.
T Consensus 206 ~~~g~~-ar~~~l~~~ITT 223 (546)
T COG4626 206 AKGGLG-ARPEGLVVYITT 223 (546)
T ss_pred HHhhhc-cCcCceEEEEec
Confidence 333333 344666666665
No 394
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.40 E-value=0.52 Score=45.15 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=26.2
Q ss_pred cHHHHhhhhhhcC--CC-CccEEEECcCCCcchhHhHHHH
Q 010762 125 SKIQAISLPMILT--PP-YRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 125 ~~~Q~~~i~~il~--~~-~~~~lv~a~TGsGKTl~~l~~i 161 (502)
+|||...|..+.. +. +..+++.||.|.|||..+...+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 5777777766653 21 2468999999999998755443
No 395
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.37 E-value=0.76 Score=49.66 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCCCccCCCCCHHHHHHHHhhC--CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|++++-....++.+.... .+..|.-++...++ .+ +.+++.||+|+|||..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~---~~--~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIE---PP--KGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC---CC--ceEEEECCCCCChHHH
Confidence 4567888876666666554321 22233323332221 23 7899999999999975
No 396
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.36 E-value=1 Score=38.66 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=70.8
Q ss_pred EEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHH-HHHHHHhhcccCceeeEeecCCCCCcccccCCCC
Q 010762 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQN-LEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221 (502)
Q Consensus 143 ~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (502)
++|.-..|-|||.+++--++..+ ..+.+++|+.=.+--...- ...+..+ +..+....-+....+ ....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~---GhG~rv~vvQFiKg~~~~GE~~~~~~~----~~~v~~~~~~~g~tw----~~~~ 99 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL---GHGLRVGVVQFIKGGWKYGEEAALEKF----GLGVEFHGMGEGFTW----ETQD 99 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh---cCCCEEEEEEEeecCcchhHHHHHHhh----ccceeEEecCCceeC----CCcC
Confidence 56666678899999777777666 4556777765222110111 1122222 111111111111111 1110
Q ss_pred CCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHH
Q 010762 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVT 301 (502)
Q Consensus 222 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~ 301 (502)
...++ ......|..... .+.-..+++||+||.-..+. .++.+ +..++..+...+....+|+..-..|+.+.+.+.
T Consensus 100 ~~~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~-~g~l~-~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 100 READI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALR-YGLLP-LEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred cHHHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHH-cCCCC-HHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 11123 233333333222 22234689999999998876 35433 455666666555455555555556777766554
Q ss_pred H
Q 010762 302 R 302 (502)
Q Consensus 302 ~ 302 (502)
.
T Consensus 175 l 175 (198)
T COG2109 175 L 175 (198)
T ss_pred H
Confidence 4
No 397
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.30 E-value=0.15 Score=49.58 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=20.8
Q ss_pred CCccEEEECcCCCcchhHhHHHHHhccCCC
Q 010762 139 PYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (502)
Q Consensus 139 ~~~~~lv~a~TGsGKTl~~l~~il~~l~~~ 168 (502)
.++.+++.||+|+|||.. +..+...+..+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL-~~~i~~~I~~n 195 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL-LQKIAQAITRN 195 (415)
T ss_pred CCCEEEEECCCCCChhHH-HHHHHHhhccc
Confidence 348999999999999985 33355555433
No 398
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.097 Score=50.49 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
-|+|+.+|||||||+.
T Consensus 227 SNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL 242 (564)
T ss_pred ccEEEECCCCCchhHH
Confidence 5899999999999984
No 399
>PRK10436 hypothetical protein; Provisional
Probab=93.11 E-value=0.1 Score=52.42 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC
Q 010762 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
+-|...+..++...+.-++++||||||||.. +..++..+.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 3333344334433336799999999999997 455666654
No 400
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.07 E-value=1.2 Score=46.54 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=32.3
Q ss_pred CCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
..+.+++++-.++..++.+... +....++ ...+ +-+++.||+|+|||..+
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~--------l~~~~~~-~~~~--~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETW--------LKAQVLE-NAPK--RILLITGPSGCGKSTTI 127 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHH--------HHhcccc-cCCC--cEEEEECCCCCCHHHHH
Confidence 3466888888888888776541 1111111 1112 56999999999999863
No 401
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.07 E-value=0.62 Score=50.22 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=17.0
Q ss_pred CCCCccEEEECcCCCcchhHh
Q 010762 137 TPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~~ 157 (502)
++...++++.||+|+|||...
T Consensus 200 ~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 200 RRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred cCCCCceEEECCCCCCHHHHH
Confidence 333479999999999999863
No 402
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.07 E-value=0.084 Score=49.38 Aligned_cols=40 Identities=30% Similarity=0.467 Sum_probs=28.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
.+++++|+||||||.. +-.++..+... ..+++++-.+.|+
T Consensus 128 ~~ili~G~tGSGKTT~-l~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 128 GNILISGPTGSGKTTL-LNALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp EEEEEEESTTSSHHHH-HHHHHHHCHTT--TSEEEEEESSS-S
T ss_pred eEEEEECCCccccchH-HHHHhhhcccc--ccceEEeccccce
Confidence 8999999999999997 45556555433 3567777666665
No 403
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.04 E-value=0.74 Score=41.93 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=33.8
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
+.-+++.|++|+|||......+...+. .+.+++++.-. +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 378999999999999876555554443 35567777644 33355555555543
No 404
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.34 Score=48.14 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=35.2
Q ss_pred CCCCCCCCccCCC---CCHHHHHHHHhhCCCC--CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 94 TPYTSATTFEDLN---LSPELLKGLYVEMKFQ--KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 94 ~~~~~~~~f~~~~---l~~~l~~~l~~~~g~~--~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.-..+.-+|+++| |..+.-+-+.+.|-.. .|--+-+..++++ +.+++-+|+|+|||+.
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV-----KGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV-----KGILLYGPPGTGKTLI 272 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccce-----eeEEEECCCCCChhHH
Confidence 3445666788886 5555555444433222 2333344444433 5699999999999986
No 405
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.99 E-value=0.46 Score=41.26 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=70.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH-HHHHHHHHHhhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA-IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
..+++..++|.|||.+++--++..+ ..+.+++++-=.+--. .-=...+.++ .++.... .+.+.....
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~--~g~~~~~~~---- 90 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHV--MGTGFTWET---- 90 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcC---CCcEEEE--CCCCCcccC----
Confidence 6899999999999999776666555 3455666664222110 0001112221 1222211 111111000
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNF 299 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~ 299 (502)
...+--+......+..... .+.-..+++||+||+-..++ .++.+ ...++..+...++..-+|+..-..|+.+.+.
T Consensus 91 --~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~-~gli~-~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 91 --QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALK-YGYLD-VEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred --CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHH-CCCcc-HHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 0000000111112222221 22345789999999998886 35543 2345555655444555555555667766655
Q ss_pred HH
Q 010762 300 VT 301 (502)
Q Consensus 300 ~~ 301 (502)
+.
T Consensus 166 AD 167 (191)
T PRK05986 166 AD 167 (191)
T ss_pred Cc
Confidence 43
No 406
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.98 E-value=0.23 Score=48.17 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=26.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
..++++||||||||.. +..++..+... ...+++.+-...|+
T Consensus 123 g~ili~G~tGSGKTT~-l~al~~~i~~~-~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 123 GLILVTGPTGSGKSTT-LASMIDYINKN-AAGHIITIEDPIEY 163 (343)
T ss_pred cEEEEECCCCCCHHHH-HHHHHHhhCcC-CCCEEEEEcCChhh
Confidence 6899999999999996 34455544322 23456666554444
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.97 E-value=0.38 Score=50.66 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=30.7
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCC
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~ 293 (502)
.+.-++|+|+.|.+.+. .....+..+++..+. +...++.|-+-|
T Consensus 128 ~~pl~LVlDDyHli~~~-~l~~~l~fLl~~~P~---~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDP-ALHEALRFLLKHAPE---NLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcc-cHHHHHHHHHHhCCC---CeEEEEEeccCC
Confidence 34468999999999874 344455555555544 788888888755
No 408
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.93 E-value=0.35 Score=51.76 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.8
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
..++++.||+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 379999999999999864
No 409
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.88 E-value=0.68 Score=48.52 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=26.0
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
+...+++||||+|.|... ....+++.+...+.... +++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-----a~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-----AFNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-----HHHHHHHHHhCCCCCeE-EEEEeC
Confidence 567899999999998652 24455566655443443 444444
No 410
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.83 E-value=0.62 Score=45.28 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=58.7
Q ss_pred ccEEEECcCCCcchhHhHHHHH-hccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGML-SRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il-~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+.+.+.|+.|.|||+. +-++ +.+.. ..+.++ .-.+...+++..+.++.+.
T Consensus 63 ~GlYl~G~vG~GKT~L--md~f~~~lp~-~~k~R~----HFh~Fm~~vh~~l~~~~~~---------------------- 113 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTML--MDLFYDSLPI-KRKRRV----HFHEFMLDVHSRLHQLRGQ---------------------- 113 (362)
T ss_pred ceEEEECCCCCchhHH--HHHHHHhCCc-cccccc----cccHHHHHHHHHHHHHhCC----------------------
Confidence 7899999999999984 3333 33321 122122 2345666777776665410
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
.+- ...+.+.+ .....+|+|||.|.- + .+-.-.+..++..+-.. ..-+|+.|-+.|.++
T Consensus 114 ----~~~----l~~va~~l------~~~~~lLcfDEF~V~-D-iaDAmil~rLf~~l~~~--gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 114 ----DDP----LPQVADEL------AKESRLLCFDEFQVT-D-IADAMILKRLFEALFKR--GVVLVATSNRPPEDL 172 (362)
T ss_pred ----Ccc----HHHHHHHH------HhcCCEEEEeeeecc-c-hhHHHHHHHHHHHHHHC--CCEEEecCCCChHHH
Confidence 000 01112222 334568999999942 2 12222344555555432 556777777777544
No 411
>PRK14701 reverse gyrase; Provisional
Probab=92.81 E-value=0.58 Score=54.37 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=53.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC------CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDF------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 409 (502)
.+.++||.+||+.-+..++..|... ++.+..+||+++..++..+++.+.+|..+|||+|..
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999888763 567889999999999999999999999999999964
No 412
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.49 Score=48.55 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=43.1
Q ss_pred eEEEeCchHHH-HHHHcCccCCCceEEEEEeCchhhhcccCCH---------HHHHHHHHHhhhcCCCeeEEEEeecCCh
Q 010762 225 QVVIGTPGTIK-KWMSAKKLGFSRLKILVYDEADHMLDEAGFR---------DDSLRIMKDIERSSGHCQVLLFSATFNE 294 (502)
Q Consensus 225 ~Ilv~Tp~~l~-~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~---------~~~~~i~~~l~~~~~~~q~v~~SAT~~~ 294 (502)
.+.|+-+.+-. ++.....-.. .+.+++||.|.+....|+. ..+++++..+.....+.-++++.||-.+
T Consensus 221 emfVGvGAsRVRdLF~qAkk~a--P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp 298 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNA--PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP 298 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccC--CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc
Confidence 34555554433 3333322222 3689999999887654322 3566677777666666778999999665
Q ss_pred hHH
Q 010762 295 TVK 297 (502)
Q Consensus 295 ~~~ 297 (502)
++.
T Consensus 299 dVl 301 (596)
T COG0465 299 DVL 301 (596)
T ss_pred ccc
Confidence 543
No 413
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.73 E-value=0.53 Score=48.29 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCCccCCCCCHHHHHHHHhhCC-CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEMK-FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|+++.-.+.+...+..... +..|..++....+ ..+.+++.||+|+|||+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~-----~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAK-----IPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCC-----CCCcEEEECCCCCCHHHH
Confidence 45678888766665554432111 2233333332211 126799999999999986
No 414
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.66 E-value=0.061 Score=49.01 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=12.6
Q ss_pred EEEECcCCCcchhH
Q 010762 143 LIAQARNGSGKTTC 156 (502)
Q Consensus 143 ~lv~a~TGsGKTl~ 156 (502)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999996
No 415
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.62 E-value=0.094 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=18.9
Q ss_pred CccEEEECcCCCcchhHhHHHHHhcc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
.+.+++.||.|+|||.. +--++..+
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 47899999999999985 44444444
No 416
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.61 E-value=1 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.0
Q ss_pred CCCCccEEEECcCCCcchhHh
Q 010762 137 TPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~~ 157 (502)
++...+.++.||+|+|||...
T Consensus 191 r~~~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 191 RRTKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred cCCCCceEEEcCCCCCHHHHH
Confidence 333479999999999999864
No 417
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=2.3 Score=39.35 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=36.0
Q ss_pred hhhhcCCC---CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 132 LPMILTPP---YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 132 i~~il~~~---~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
+|.++.|. .+.+++.+|+|+||+.. .-++.. ......+-+.+..|+..|.-.-.++
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAVAT-----EAnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYL--AKAVAT-----EANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHH--HHHHHh-----hcCCceEEeehHHHHHHHhccHHHH
Confidence 46666663 46799999999999864 333222 1114567777778887766554444
No 418
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.59 E-value=0.13 Score=49.27 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=28.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La 184 (502)
.+++++|+||||||.. +-.++..+. ...+++.+=-+.||.
T Consensus 161 ~nili~G~tgSGKTTl-l~aL~~~ip---~~~ri~tiEd~~El~ 200 (332)
T PRK13900 161 KNIIISGGTSTGKTTF-TNAALREIP---AIERLITVEDAREIV 200 (332)
T ss_pred CcEEEECCCCCCHHHH-HHHHHhhCC---CCCeEEEecCCCccc
Confidence 8999999999999986 455555553 234666665666653
No 419
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.53 E-value=0.71 Score=47.46 Aligned_cols=68 Identities=22% Similarity=0.453 Sum_probs=55.3
Q ss_pred EEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC-----ccccC-CCCCCCCE
Q 010762 353 TIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLARG-FDQQQVNL 421 (502)
Q Consensus 353 ~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~~G-ldi~~v~~ 421 (502)
+||+++|++-|..+++.+... ++.++.++|+++...+...++ .| .+|||+|+ .+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998887643 577899999998777665544 46 89999994 56666 88889999
Q ss_pred EEE
Q 010762 422 IVN 424 (502)
Q Consensus 422 VI~ 424 (502)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 420
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.53 E-value=0.11 Score=52.98 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=32.6
Q ss_pred CCcHHHHhhhhhhc----CCCCccEEEECcCCCcchhHhHHHHHhcc
Q 010762 123 KPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 123 ~p~~~Q~~~i~~il----~~~~~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
+|+.||...+..+. .| +--|...|||+|||+..+..++..|
T Consensus 15 ~PYdIQ~~lM~elyrvLe~G--kIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEG--KIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcC--CeeeeeCCCCCCchHHHHHHHHHHH
Confidence 48889987766553 35 8899999999999999877777655
No 421
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.50 E-value=0.1 Score=51.60 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=37.1
Q ss_pred cEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
++++.|+||||||.++++|-+-.. ...++|+=|.-++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999988876542 346888889989987766665543
No 422
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.42 E-value=1.7 Score=42.51 Aligned_cols=42 Identities=21% Similarity=0.174 Sum_probs=24.1
Q ss_pred EEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 144 lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
++.++.|+|||....+.++..+........++++ |+..-+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHH
Confidence 4678899999998777676665544433455555 55544444
No 423
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.42 E-value=0.17 Score=52.53 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC
Q 010762 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
+-|...+..++...+.-++++||||||||.. +..++..+.
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 4455555555443336789999999999987 455666653
No 424
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.40 E-value=0.35 Score=42.56 Aligned_cols=55 Identities=13% Similarity=0.335 Sum_probs=26.1
Q ss_pred ceEEEEEeCchhhhcccCCH-HHHHHHHHHhhhcCC-CeeEEEEeecCChhHHHHHHH
Q 010762 247 RLKILVYDEADHMLDEAGFR-DDSLRIMKDIERSSG-HCQVLLFSATFNETVKNFVTR 302 (502)
Q Consensus 247 ~~~~lVlDEah~l~~~~~~~-~~~~~i~~~l~~~~~-~~q~v~~SAT~~~~~~~~~~~ 302 (502)
.-.++|+||||......... ......+..+...+. ..-++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 45789999999998754442 223344455544332 34556666554 444444444
No 425
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.40 E-value=0.93 Score=46.74 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=68.2
Q ss_pred HHhcccCCcEEEEcCChhhHHHH----HHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-cccCCCCCC
Q 010762 344 FELGEKMGQTIIFVRTKNSASAL----HKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-LARGFDQQQ 418 (502)
Q Consensus 344 ~~~~~~~~~~lVF~~s~~~~~~l----~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-~~~Gldi~~ 418 (502)
......+..+.+-+||-=-|+.. .+.|...|+.+..+.|.+....|.++++...+|.++++|.|.+ +...+++.+
T Consensus 305 l~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~ 384 (677)
T COG1200 305 LAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHN 384 (677)
T ss_pred HHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecc
Confidence 34455788899999996655554 4555667999999999999999999999999999999999976 668899999
Q ss_pred CCEEEEe
Q 010762 419 VNLIVNY 425 (502)
Q Consensus 419 v~~VI~~ 425 (502)
+-.||.-
T Consensus 385 LgLVIiD 391 (677)
T COG1200 385 LGLVIID 391 (677)
T ss_pred eeEEEEe
Confidence 9998854
No 426
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.35 E-value=0.69 Score=45.20 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=31.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
.-+++.|++|+|||...+..+.. +.. .+.+++++.-. +-..|+.....++
T Consensus 83 slvLI~G~pG~GKStLllq~a~~-~a~--~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAAR-LAK--RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH-HHh--cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 78999999999999864443332 221 23578887654 3445665555444
No 427
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.34 E-value=1.5 Score=41.36 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=32.3
Q ss_pred hHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecC
Q 010762 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATF 292 (502)
Q Consensus 232 ~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~ 292 (502)
..|+..+..+....+.-=++|+||+|.... +.-.-.+..++..-...+.++-++++|.-+
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~-h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAP-HSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhcccc-chhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 445666665544333335789999996654 233333444444444333355566666554
No 428
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.29 Score=53.06 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=75.8
Q ss_pred CCCccCCCCCHHHHHHHHhhC---CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEE
Q 010762 99 ATTFEDLNLSPELLKGLYVEM---KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~---g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~l 175 (502)
...|+++|........|+. + -+..|.-+|...|. +.+.++.++|.|+|||+.+
T Consensus 261 ~v~fd~vggl~~~i~~LKE-mVl~PLlyPE~f~~~~it-----pPrgvL~~GppGTGkTl~a------------------ 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKE-MVLLPLLYPEFFDNFNIT-----PPRGVLFHGPPGTGKTLMA------------------ 316 (1080)
T ss_pred ccCccccccHHHHHHHHHH-HHHhHhhhhhHhhhcccC-----CCcceeecCCCCCchhHHH------------------
Confidence 3468888866666666654 3 22233333333321 1377999999999999863
Q ss_pred EecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeC
Q 010762 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (502)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDE 255 (502)
|+||......-++..-... .....-.--|+..++=++++-... .-...+.+.+||
T Consensus 317 -----raLa~~~s~~~~kisffmr-------------------kgaD~lskwvgEaERqlrllFeeA-~k~qPSIIffde 371 (1080)
T KOG0732|consen 317 -----RALAAACSRGNRKISFFMR-------------------KGADCLSKWVGEAERQLRLLFEEA-QKTQPSIIFFDE 371 (1080)
T ss_pred -----Hhhhhhhcccccccchhhh-------------------cCchhhccccCcHHHHHHHHHHHH-hccCceEEeccc
Confidence 2222221111111110000 000001234566666565554322 134567899999
Q ss_pred chhhhccc------CCHHHHHHHHHHhhhcCCCeeEEEEeecC
Q 010762 256 ADHMLDEA------GFRDDSLRIMKDIERSSGHCQVLLFSATF 292 (502)
Q Consensus 256 ah~l~~~~------~~~~~~~~i~~~l~~~~~~~q~v~~SAT~ 292 (502)
+|=+---. -..-.+..++..+.......|+++++||-
T Consensus 372 IdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 372 IDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred cccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 99332100 01122334555566666678999999993
No 429
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.27 E-value=0.27 Score=44.89 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=27.3
Q ss_pred CchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHh
Q 010762 230 TPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276 (502)
Q Consensus 230 Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l 276 (502)
-|+-|..++.+ +..-+++.+||+|++.. .-.+.++-.+..+
T Consensus 90 K~gDlaaiLt~----Le~~DVLFIDEIHrl~~--~vEE~LYpaMEDf 130 (332)
T COG2255 90 KPGDLAAILTN----LEEGDVLFIDEIHRLSP--AVEEVLYPAMEDF 130 (332)
T ss_pred ChhhHHHHHhc----CCcCCeEEEehhhhcCh--hHHHHhhhhhhhe
Confidence 45666766664 66667899999999875 3444455555544
No 430
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.5 Score=48.30 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=36.6
Q ss_pred CCCCCccCCCCCHHHHHHHHh--hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 97 TSATTFEDLNLSPELLKGLYV--EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~--~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+..+|+++|=..++.+.|.. .+..+.|-.+.+..+. +.+.+++.+|+|+|||+.+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~-----ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGIS-----PPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCC-----CCceEEEECCCCcchHHHH
Confidence 456689999855555555542 1444455555554432 2378999999999999963
No 431
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.20 E-value=0.53 Score=43.96 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=28.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (502)
.-+++.|++|+|||...+-.+.+.... .+..++++.-- +-..++...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E-~~~~~~~~r~ 78 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLE-EPVVRTARRL 78 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcc-cCHHHHHHHH
Confidence 789999999999998644434333221 24567777632 2234444444
No 432
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.19 E-value=2.4 Score=42.14 Aligned_cols=160 Identities=21% Similarity=0.280 Sum_probs=100.0
Q ss_pred EecCChHHHHHHHHHHHHHh-cccCCcEEEEcCChhhHHHHHHHHHhC-CC---cEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 327 VYCPDELAKVMVIRDRIFEL-GEKMGQTIIFVRTKNSASALHKALKDF-GY---EVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 327 ~~~~~~~~k~~~l~~~l~~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~---~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
+.++....|...-.-.+... ...++++|+.+||+.-+..-+..+... ++ .++.+.|..++++|...+. +.
T Consensus 34 vvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~ 108 (542)
T COG1111 34 VVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KK 108 (542)
T ss_pred EEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hC
Confidence 44455555544322222222 223447999999999888888777653 44 6789999999999987553 34
Q ss_pred eEEEEc------CccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEE-eeCCccHHHHHHH
Q 010762 402 QVLIST------DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL-LMDGDDMIIMEKI 474 (502)
Q Consensus 402 ~iLv~T------~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~-~~~~~~~~~~~~i 474 (502)
+|+|+| |+.+--+|+.++.++|+-..-.. ..-..|+.-+-.--|..+.-..+-+ -+|+.+...+..+
T Consensus 109 kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA------vGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV 182 (542)
T COG1111 109 KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA------VGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEV 182 (542)
T ss_pred CEEEeccHHHHhHHhcCccChHHceEEEechhhhc------cCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHH
Confidence 799999 56677789999999996443321 1223366666666666554444433 3455667777777
Q ss_pred HHHhCCcccccc-CCHHHHHHHHH
Q 010762 475 ERYFDIKVTEVR-NSDEDFKAALK 497 (502)
Q Consensus 475 ~~~l~~~~~~~~-~~~~~~~~~~~ 497 (502)
.+.|+++--++. +.-.++...++
T Consensus 183 ~~nLgIe~vevrTE~d~DV~~Yv~ 206 (542)
T COG1111 183 VENLGIEKVEVRTEEDPDVRPYVK 206 (542)
T ss_pred HHhCCcceEEEecCCCccHHHhhc
Confidence 777777643333 44444444443
No 433
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.10 E-value=8 Score=34.14 Aligned_cols=147 Identities=11% Similarity=0.027 Sum_probs=77.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec---CcHHHHHHHHHH----HHHhhcccCceeeEeecCCCCCc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC---PTRELAIQNLEV----LRKMGKHTGITSECAVPTDSTNY 213 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~---Pt~~La~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 213 (502)
.=+++.++.|+|||+..+-.+.-.+. .+.++.+++ |+|+...|.... ...+... .+....+......+
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~---~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~~~~~~- 103 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLM---NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNLEPVNW- 103 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHh---CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEeccccccc-
Confidence 67899999999999865444443332 344566665 556665554331 1111000 00000000000000
Q ss_pred ccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecC-
Q 010762 214 VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATF- 292 (502)
Q Consensus 214 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~- 292 (502)
---+-..+++.+.+.. ...+-+++|+|-...+... .-...+..++..+++....-+++++|+..
T Consensus 104 -------------~~~~~~~~L~~l~~~~-k~~~~dViIIDSls~~~~~-~~~~~vl~fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 104 -------------GRRSARKLLDLLLEFI-KRWEKDVIIIDSLSAFATY-DSEDAVLNFMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred -------------ChHHHHHHHHHHHhhH-HhhcCCEEEEecccHHhhc-ccHHHHHHHHHHHHHHHhCCCEEEEEeChh
Confidence 0001122333333222 2556778999999877652 33456777777777766677899999974
Q ss_pred --ChhHHHHHHHHhcCC
Q 010762 293 --NETVKNFVTRIVKDY 307 (502)
Q Consensus 293 --~~~~~~~~~~~~~~~ 307 (502)
++++...++..+.-+
T Consensus 169 ~l~e~~~~rirs~~d~~ 185 (235)
T COG2874 169 ALDEDVLTRIRSACDVY 185 (235)
T ss_pred hcCHHHHHHHHHhhhee
Confidence 455544444444433
No 434
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.07 E-value=1.3 Score=38.02 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.0
Q ss_pred EEEECcCCCcchhHhHH
Q 010762 143 LIAQARNGSGKTTCFVL 159 (502)
Q Consensus 143 ~lv~a~TGsGKTl~~l~ 159 (502)
+++.|++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999997433
No 435
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.96 E-value=2.2 Score=40.29 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=75.4
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec-Cc-HHHHHHHHHHHHHhhcccCceeeEeecCCCCCccccc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC-PT-RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~-Pt-~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (502)
...+++.|-.|+|||.+..- +...+. ..+.++++.+ .| |+-|.. +++.|+...++.+.....+.
T Consensus 139 p~Vil~vGVNG~GKTTTIaK-LA~~l~--~~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~-------- 204 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAK-LAKYLK--QQGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGA-------- 204 (340)
T ss_pred cEEEEEEecCCCchHhHHHH-HHHHHH--HCCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCC--------
Confidence 35789999999999997322 222222 2344555554 33 444433 33444444454433221111
Q ss_pred CCCCCCCeEEEeCchH-HHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCC---CeeEEEEeecCC
Q 010762 218 KRPPVTAQVVIGTPGT-IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG---HCQVLLFSATFN 293 (502)
Q Consensus 218 ~~~~~~~~Ilv~Tp~~-l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~---~~q~v~~SAT~~ 293 (502)
.|.. ..+-++.. .-.++++|++|=|-||-...+..+++..|.+.+.+.-+ ..-++.+-||.-
T Consensus 205 ------------DpAaVafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 205 ------------DPAAVAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ------------CcHHHHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 1221 12323221 24578899999999998876777788888777765432 224555588876
Q ss_pred hhHHHHHHH
Q 010762 294 ETVKNFVTR 302 (502)
Q Consensus 294 ~~~~~~~~~ 302 (502)
.+-..-++.
T Consensus 271 qnal~QAk~ 279 (340)
T COG0552 271 QNALSQAKI 279 (340)
T ss_pred hhHHHHHHH
Confidence 554443443
No 436
>PRK13764 ATPase; Provisional
Probab=91.93 E-value=0.27 Score=50.75 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=25.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
++++++|+||||||.. +..++..+.. .+..++.+--.+++
T Consensus 258 ~~ILIsG~TGSGKTTl-l~AL~~~i~~--~~riV~TiEDp~El 297 (602)
T PRK13764 258 EGILIAGAPGAGKSTF-AQALAEFYAD--MGKIVKTMESPRDL 297 (602)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHhh--CCCEEEEECCCccc
Confidence 7899999999999985 4555555532 22233344344444
No 437
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=91.90 E-value=0.81 Score=51.69 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=58.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcE---EEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccc-cCCC-CC-C
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDF----GYEV---TTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA-RGFD-QQ-Q 418 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~---~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~-~Gld-i~-~ 418 (502)
.+.++||.+||+.-|..++..+... ++.+ ..+||+++..++...++.+.+|...|||+|...- ..++ +. .
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 4678999999999999998887654 4443 3689999999999999999999999999996421 1111 11 5
Q ss_pred CCEEEEec
Q 010762 419 VNLIVNYD 426 (502)
Q Consensus 419 v~~VI~~~ 426 (502)
++++|.-+
T Consensus 200 ~~~iVvDE 207 (1171)
T TIGR01054 200 FDFIFVDD 207 (1171)
T ss_pred CCEEEEeC
Confidence 67777533
No 438
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.74 E-value=0.28 Score=50.83 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCcHHHHhhhhhhcC--------CCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 123 KPSKIQAISLPMILT--------PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~--------~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
.++..|.+++-.... |.--..+|-...|-||--...-.|+..+.+..+ ++|++.-+..|-....+.++.+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK--rAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK--RALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc--eeEEEEeccccccchhhchhhc
Q ss_pred hcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCc---------------hHHHHHHHcCccCCCceEEEEEeCchhh
Q 010762 195 GKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTP---------------GTIKKWMSAKKLGFSRLKILVYDEADHM 259 (502)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp---------------~~l~~~l~~~~~~~~~~~~lVlDEah~l 259 (502)
+..- ..++.+.........-......+-.|+++|+ .||.+++++-.-.+..+ |||||||+-
T Consensus 342 gA~~--I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGv--IvfDECHkA 417 (1300)
T KOG1513|consen 342 GATG--IAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGV--IVFDECHKA 417 (1300)
T ss_pred CCCC--ccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcccee--EEehhhhhh
Q ss_pred hc----ccCCHHHHHHHHHHhhhcCCCeeEEEEeec
Q 010762 260 LD----EAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (502)
Q Consensus 260 ~~----~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT 291 (502)
.+ ..+-....-..+-.+.+.-|+.+++.-|||
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASAT 453 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASAT 453 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCCCceEEEeecc
No 439
>CHL00176 ftsH cell division protein; Validated
Probab=91.74 E-value=0.95 Score=47.58 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.2
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.||+|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999863
No 440
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.71 E-value=0.66 Score=39.09 Aligned_cols=54 Identities=11% Similarity=0.184 Sum_probs=35.9
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHH
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 300 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~ 300 (502)
...+++||+||+-..+. .++.+ ...++..+...+...-+|+.+-..|+.+.+.+
T Consensus 93 ~~~~dLlVLDEi~~a~~-~gli~-~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALG-YGLLD-VEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhh-CCCCC-HHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 46789999999998765 34432 33455555555546667777777777776644
No 441
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.65 E-value=0.18 Score=52.26 Aligned_cols=49 Identities=20% Similarity=0.032 Sum_probs=40.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
+++++.||||||||..+++|-+-.. +..++|+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 6899999999999999999998653 235788889999988877766664
No 442
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.62 E-value=0.16 Score=51.75 Aligned_cols=50 Identities=28% Similarity=0.349 Sum_probs=39.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
.++++.|+||||||..+++|.+-.. ...++|.=|--+|...+....++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999987432 2267788899899887777666554
No 443
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.43 E-value=0.29 Score=44.67 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=36.6
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
+..+++.|++|+|||...+-.+...+. .+.++++++ +.+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 388999999999999976655555542 355678877 3455667666666554
No 444
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.42 E-value=2 Score=38.96 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=31.7
Q ss_pred ceEEEEEeCchhhhcccCCH-------HHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 247 RLKILVYDEADHMLDEAGFR-------DDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 247 ~~~~lVlDEah~l~~~~~~~-------~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
..+++.+||.|.+--+..|. +.++.++..+.....+-=++...||-.+++
T Consensus 210 aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 210 APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 35678899999775443433 345556666665555566788888855443
No 445
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.38 E-value=0.78 Score=47.58 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~ 168 (502)
++-+.+.||+|||||. ++-++..+...
T Consensus 361 G~~vaIvG~SGsGKST--Ll~lL~g~~~p 387 (529)
T TIGR02868 361 GERVAILGPSGSGKST--LLMLLTGLLDP 387 (529)
T ss_pred CCEEEEECCCCCCHHH--HHHHHhcCCCC
Confidence 3899999999999998 45555555443
No 446
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.28 E-value=0.79 Score=50.23 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.0
Q ss_pred CCCCccEEEECcCCCcchhHh
Q 010762 137 TPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 137 ~~~~~~~lv~a~TGsGKTl~~ 157 (502)
+....++++.||+|+|||...
T Consensus 196 r~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 196 RRTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred cCCcCceEEECCCCCCHHHHH
Confidence 333469999999999999864
No 447
>PHA00012 I assembly protein
Probab=91.23 E-value=0.77 Score=43.16 Aligned_cols=57 Identities=9% Similarity=0.184 Sum_probs=32.2
Q ss_pred CCceEEEEEeCchhhhcccCCH----HHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHh
Q 010762 245 FSRLKILVYDEADHMLDEAGFR----DDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIV 304 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~----~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 304 (502)
...-+++|+||||..+...++. ..+...+...+.. ..-++++|-.+. .+...++..+
T Consensus 79 ep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~--G~DvilITQ~ps-~VDs~IR~ll 139 (361)
T PHA00012 79 ESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKL--GWDIIFIIQDIS-IMDKQAREAL 139 (361)
T ss_pred CCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccC--CceEEEEcCCHH-HHhHHHHHhh
Confidence 3566799999999998754433 3233333333322 345666666643 4444454443
No 448
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.20 E-value=3.2 Score=35.57 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=51.7
Q ss_pred EEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCC
Q 010762 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPV 222 (502)
Q Consensus 143 ~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (502)
++|.|++|||||..+.-.+.. .+.+++++.-.+.+-..+.+.+.+.-..-+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~H~~~R~----------------------- 52 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIARHRKRRP----------------------- 52 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHHHHHhCC-----------------------
Confidence 578999999999875544432 344788887776666666665554211100
Q ss_pred CCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhc
Q 010762 223 TAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 223 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~ 261 (502)
..-..+-+|..|.+.+... ...+.|++|=...+..
T Consensus 53 ~~w~t~E~~~~l~~~l~~~----~~~~~VLIDclt~~~~ 87 (169)
T cd00544 53 AHWRTIETPRDLVSALKEL----DPGDVVLIDCLTLWVT 87 (169)
T ss_pred CCceEeecHHHHHHHHHhc----CCCCEEEEEcHhHHHH
Confidence 1123445666666666432 1345788888776654
No 449
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.17 E-value=0.13 Score=44.47 Aligned_cols=39 Identities=26% Similarity=0.219 Sum_probs=27.0
Q ss_pred CCeEEEeCchHHHHHHHcCccC--CCceEEEEEeCchhhhc
Q 010762 223 TAQVVIGTPGTIKKWMSAKKLG--FSRLKILVYDEADHMLD 261 (502)
Q Consensus 223 ~~~Ilv~Tp~~l~~~l~~~~~~--~~~~~~lVlDEah~l~~ 261 (502)
.++|+|+++..|++-.....+. ...-.+|||||||.+.+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4799999999887654332221 23457899999998876
No 450
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=6.7 Score=35.68 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=43.5
Q ss_pred CCCCccCCCCCHHHHHHHHhhC--CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEE
Q 010762 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~l 175 (502)
+..++.+.|=+++.++.+.... ..-.|-.+-...| . +.+.+++.+|+|+|||+++ -++.++ ...+.
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgi----d-ppkgvllygppgtgktl~a-ravanr------tdacf 239 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI----D-PPKGVLLYGPPGTGKTLCA-RAVANR------TDACF 239 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC----C-CCCceEEeCCCCCchhHHH-HHHhcc------cCceE
Confidence 4456778888888877776421 1111211111111 1 2378999999999999984 223322 22345
Q ss_pred EecCcHHHHHH
Q 010762 176 CICPTRELAIQ 186 (502)
Q Consensus 176 il~Pt~~La~q 186 (502)
|-+=-.+|++.
T Consensus 240 irvigselvqk 250 (435)
T KOG0729|consen 240 IRVIGSELVQK 250 (435)
T ss_pred EeehhHHHHHH
Confidence 55555677654
No 451
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.13 Score=47.61 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.|+++.+|||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 6899999999999985
No 452
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.99 E-value=0.15 Score=43.62 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=16.6
Q ss_pred cEEEECcCCCcchhHhHHHHHhcc
Q 010762 142 NLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
++++.|+.|+|||.. +.-+++.+
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHH
T ss_pred CEEEECcCCCCHHHH-HHHHHHHh
Confidence 479999999999997 34455555
No 453
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.92 E-value=1.4 Score=37.68 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=35.5
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHH
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVT 301 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~ 301 (502)
-..+++||+||+-..+. .++-+. ..++..+...++..-+|+..-..|+.+.+.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~-~gli~~-~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALK-YGYLDV-EEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHH-CCCcCH-HHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998776 355432 34555555555455666666667777666543
No 454
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.92 E-value=0.35 Score=46.07 Aligned_cols=73 Identities=27% Similarity=0.299 Sum_probs=45.7
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
..+..-.+++.-+.. +..+++.|..-+..++.. .++++++++||||||.. +.+++..+- ...+++.+=-
T Consensus 110 Rk~~~~~~t~~~l~~------~gt~~~~~~ayL~~~ie~-~~siii~G~t~sGKTt~-lnall~~Ip---~~~rivtIEd 178 (312)
T COG0630 110 RKFSDEPITPEDLIE------YGTISPEQAAYLWLAIEA-RKSIIICGGTASGKTTL-LNALLDFIP---PEERIVTIED 178 (312)
T ss_pred EcCCCCCCCHHHHhh------cCCCCHHHHHHHHHHHHc-CCcEEEECCCCCCHHHH-HHHHHHhCC---chhcEEEEec
Confidence 344555555544432 335667776655555544 29999999999999986 666665553 2335666666
Q ss_pred cHHH
Q 010762 180 TREL 183 (502)
Q Consensus 180 t~~L 183 (502)
+.++
T Consensus 179 t~E~ 182 (312)
T COG0630 179 TPEL 182 (312)
T ss_pred cccc
Confidence 6655
No 455
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.91 E-value=0.77 Score=45.08 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=33.3
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc-HHHHHHHHHH
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT-RELAIQNLEV 190 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt-~~La~q~~~~ 190 (502)
+..+.|+|.+|+|||.+ +.-++..+......+.++++--+ ...+..++..
T Consensus 175 ~gSlYVsG~PGtgkt~~-l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTAL-LSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CcceEeeCCCCcchHHH-HHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 47899999999999997 44466666555566554555443 3555555543
No 456
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=2.1 Score=43.99 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=29.5
Q ss_pred ceEEEEEeCchhhhcccCC------HHHHHHHHHHhhhcCCCeeEEEEeecC
Q 010762 247 RLKILVYDEADHMLDEAGF------RDDSLRIMKDIERSSGHCQVLLFSATF 292 (502)
Q Consensus 247 ~~~~lVlDEah~l~~~~~~------~~~~~~i~~~l~~~~~~~q~v~~SAT~ 292 (502)
..++|.+||+|.+....+. ...+..++..+........++++-||=
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN 386 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATN 386 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCC
Confidence 4568999999999874443 245566666664433344566677773
No 457
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.79 E-value=0.44 Score=41.67 Aligned_cols=32 Identities=34% Similarity=0.395 Sum_probs=23.6
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.++-|...+...+.. +..+++.++||||||..
T Consensus 10 ~~~~~~~~l~~~v~~-g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEA-RKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhC-CCEEEEECCCCCCHHHH
Confidence 345566566555554 38999999999999985
No 458
>PRK09354 recA recombinase A; Provisional
Probab=90.78 E-value=0.56 Score=45.05 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=30.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 185 (502)
+-+.+.+|+|||||...+..+.+... .+..++++-.-..+-.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 102 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHH
Confidence 78999999999999986665554432 3567888876555543
No 459
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.71 E-value=1.9 Score=47.42 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEc
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 407 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T 407 (502)
...|........+.....++.+.|.+||-=-|+.-++-|++ .++++..+..-.+.++...+++..++|+++|+|.|
T Consensus 625 GFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT 704 (1139)
T COG1197 625 GFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT 704 (1139)
T ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec
Confidence 45566666665666666889999999998777777666654 47889999999999999999999999999999999
Q ss_pred -CccccCCCCCCCCEEEEe-----cC---------------CCCCCCCCCCCccchhhhhcccccC--------CCcceE
Q 010762 408 -DVLARGFDQQQVNLIVNY-----DP---------------PVKHGKHLEPDCEVYLHRIGRAGRF--------GRKGVV 458 (502)
Q Consensus 408 -~~~~~Gldi~~v~~VI~~-----~~---------------p~~~~~~~~~s~~~y~qr~GR~~R~--------g~~g~~ 458 (502)
..++.++-+.++-.||.- +. -+-...+.|++ +||.==..|. -+.-.+
T Consensus 705 HrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRT----L~Msm~GiRdlSvI~TPP~~R~pV 780 (1139)
T COG1197 705 HRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRT----LNMSLSGIRDLSVIATPPEDRLPV 780 (1139)
T ss_pred hHhhCCCcEEecCCeEEEechhhcCccHHHHHHHHhccCcEEEeeCCCCcch----HHHHHhcchhhhhccCCCCCCcce
Confidence 567888999999998851 11 11111112222 3444333342 122357
Q ss_pred EEEeeCCccHHHHHHHHHHhCCccccc
Q 010762 459 FNLLMDGDDMIIMEKIERYFDIKVTEV 485 (502)
Q Consensus 459 ~~~~~~~~~~~~~~~i~~~l~~~~~~~ 485 (502)
-+|+.+.++..+...|.+.+.+-.+-+
T Consensus 781 ~T~V~~~d~~~ireAI~REl~RgGQvf 807 (1139)
T COG1197 781 KTFVSEYDDLLIREAILRELLRGGQVF 807 (1139)
T ss_pred EEEEecCChHHHHHHHHHHHhcCCEEE
Confidence 789998888888888888886665444
No 460
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=90.67 E-value=0.18 Score=47.32 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=41.2
Q ss_pred CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 121 ~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
+.--|+.|..=+..+.+. .-++..+|-|+|||..........+... .-.++|..=|
T Consensus 126 I~~kt~~Q~~y~eai~~~--di~fGiGpAGTGKTyLava~av~al~~~-~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEH--DIVFGIGPAGTGKTYLAVAKAVDALGAG-QVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhc--CeeeeecccccCChhhhHHhHhhhhhhc-ccceeeecCc
Confidence 556788999988888887 7789999999999998777666666432 2224554446
No 461
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.42 E-value=0.33 Score=51.12 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=38.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
+++++.||||||||..+++|-+-.. ...++|+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-----~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-----KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-----CCCEEEEeCCchHHHHHHHHHHhC
Confidence 6899999999999999999987653 235788888888887766655543
No 462
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.40 E-value=0.35 Score=46.65 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.2
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||...
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 68999999999999864
No 463
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.39 E-value=0.29 Score=43.33 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=24.1
Q ss_pred cEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHH
Q 010762 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~ 182 (502)
-++++||||||||.. +..++..+... .+.+++.+.-..+
T Consensus 3 lilI~GptGSGKTTl-l~~ll~~~~~~-~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTT-LAAMIDYINKN-KTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhhhc-CCcEEEEEcCCcc
Confidence 478999999999997 34445444322 2335555554434
No 464
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=1.4 Score=43.97 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHhhCCCCCCcHHHHhhhhh-------hcC---CCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCe
Q 010762 104 DLNLSPELLKGLYVEMKFQKPSKIQAISLPM-------ILT---PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ 173 (502)
Q Consensus 104 ~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-------il~---~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~ 173 (502)
.+|.+.+-++.... .|.-...|.-...+.. +-. ..-..+++.+|.|||||..+.-.++ ....|.
T Consensus 493 AFG~see~l~~~~~-~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~-----~S~FPF 566 (744)
T KOG0741|consen 493 AFGISEEDLERFVM-NGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL-----SSDFPF 566 (744)
T ss_pred ccCCCHHHHHHHHh-CCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh-----hcCCCe
Confidence 46777777777654 4444333322222211 000 1125799999999999974333222 134556
Q ss_pred EEEecCc
Q 010762 174 ALCICPT 180 (502)
Q Consensus 174 ~lil~Pt 180 (502)
+=|+.|.
T Consensus 567 vKiiSpe 573 (744)
T KOG0741|consen 567 VKIISPE 573 (744)
T ss_pred EEEeChH
Confidence 6666664
No 465
>PRK07413 hypothetical protein; Validated
Probab=90.36 E-value=3.4 Score=40.14 Aligned_cols=105 Identities=9% Similarity=0.107 Sum_probs=59.1
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhc--CCceeeecccccccccc
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK--DYNQLFVKKEELSLESV 322 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 322 (502)
-..+++|||||+-..++ .++.+ ...++..+...++..-+|+..-..|+.+.+.+..... ...+.+-.....+...-
T Consensus 123 sg~ydlvILDEi~~Al~-~gll~-~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlVTEm~~iKHp~~~~~~~~~~~~ 200 (382)
T PRK07413 123 SGLYSVVVLDELNPVLD-LGLLP-VDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLHSEMRPHRRPTASELGVPFNSS 200 (382)
T ss_pred CCCCCEEEEehhHHHHH-CCCcc-HHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCeeEEeceecCCCcCCCCcccCCC
Confidence 45689999999998876 46544 3445666665555666666666777777665543221 11111111122222333
Q ss_pred eEEEEecCChHHHHHHHHHHHHHhcccCC
Q 010762 323 KQYKVYCPDELAKVMVIRDRIFELGEKMG 351 (502)
Q Consensus 323 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 351 (502)
-...+++.+...|.........+....+.
T Consensus 201 g~i~VYTG~GKGKTTAAlGlAlRA~G~G~ 229 (382)
T PRK07413 201 GGIEIYTGEGKGKSTSALGKALQAIGRGI 229 (382)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHhcCCC
Confidence 34456666666676666665555554553
No 466
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.36 E-value=1.3 Score=48.56 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=16.0
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
.+++++.||+|.|||...
T Consensus 200 ~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIA 217 (821)
T ss_pred cCCeEEECCCCCCHHHHH
Confidence 479999999999999864
No 467
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.34 E-value=0.55 Score=44.62 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=28.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 185 (502)
+-+.+.+|+|||||...+..+.+... .+..++++-.-..+-.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 97 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHH
Confidence 78999999999999975554444432 3557777765544433
No 468
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=90.29 E-value=3 Score=36.78 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=53.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----c-ccCCCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----L-ARGFDQQQ 418 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~-~~Gldi~~ 418 (502)
.+.++||.+++...+...+..+... ++.+..++|+.+.......+. +...|+|+|.. + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3568999999999998887776554 678889999988765543332 56789999942 2 22356778
Q ss_pred CCEEEEec
Q 010762 419 VNLIVNYD 426 (502)
Q Consensus 419 v~~VI~~~ 426 (502)
++++|.-+
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 88888543
No 469
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.26 E-value=1.6 Score=36.30 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=18.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
..+.+.+++|+|||. ++-++..+.
T Consensus 27 e~~~i~G~nGsGKSt--Ll~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKST--LLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHH--HHHHHcCCC
Confidence 889999999999998 444454443
No 470
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.21 E-value=1.7 Score=41.94 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEee
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSA 290 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SA 290 (502)
....+++|+||||+|... ..+.+++.+...++...+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~-----a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-----AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-----HHHHHHHHhcCCCCCceEEEEeC
Confidence 456789999999998752 34566777766554555555433
No 471
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=90.13 E-value=0.83 Score=45.59 Aligned_cols=68 Identities=15% Similarity=0.305 Sum_probs=53.7
Q ss_pred EEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----cccC----CCCCCC
Q 010762 353 TIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LARG----FDQQQV 419 (502)
Q Consensus 353 ~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~~G----ldi~~v 419 (502)
.|||++|++-|..+...|... ++.++.+.|||+...++++++. .-.|+|||.- +..+ =++..+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 799999999999999999754 8999999999999998888876 5579999962 1111 145567
Q ss_pred CEEEE
Q 010762 420 NLIVN 424 (502)
Q Consensus 420 ~~VI~ 424 (502)
+++|.
T Consensus 342 kcLVl 346 (731)
T KOG0347|consen 342 KCLVL 346 (731)
T ss_pred eEEEE
Confidence 77664
No 472
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=89.94 E-value=0.35 Score=43.29 Aligned_cols=30 Identities=7% Similarity=0.201 Sum_probs=20.3
Q ss_pred hHHHHHHHcCccCCCceEEEEEeCchhhhc
Q 010762 232 GTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 232 ~~l~~~l~~~~~~~~~~~~lVlDEah~l~~ 261 (502)
+.+.+.+..-......++.||||.+..+..
T Consensus 66 ~~~~d~l~~~~~~~~~ydtVVIDsI~~l~~ 95 (220)
T TIGR01618 66 QAMVEFYVMQNIQAVKYDNIVIDNISALQN 95 (220)
T ss_pred HHHHHHHHHHHhccccCCEEEEecHHHHHH
Confidence 455555544333467789999999998643
No 473
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=89.94 E-value=1 Score=41.68 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=34.0
Q ss_pred eEEEEEeCchhhhcccCCHHHHHHHHHHhhh----cCCCeeEEEEeecCChhHHHHHHHHh
Q 010762 248 LKILVYDEADHMLDEAGFRDDSLRIMKDIER----SSGHCQVLLFSATFNETVKNFVTRIV 304 (502)
Q Consensus 248 ~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~----~~~~~q~v~~SAT~~~~~~~~~~~~~ 304 (502)
=+++|+||+|.|-. |..+.+.-.+..-+. ...+.-.|++|.+-...+.+.+....
T Consensus 179 rslFIFDE~DKmp~--gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170|consen 179 RSLFIFDEVDKLPP--GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred CceEEechhhhcCH--hHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHH
Confidence 35799999999865 455555544443221 12245789999887666665555443
No 474
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.83 E-value=2 Score=47.00 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=21.3
Q ss_pred HHhhhhhhc----CCCCccEEEECcCCCcchhHh
Q 010762 128 QAISLPMIL----TPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 128 Q~~~i~~il----~~~~~~~lv~a~TGsGKTl~~ 157 (502)
|..-|..++ ++...++++.||+|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 554444443 444479999999999999863
No 475
>PRK09087 hypothetical protein; Validated
Probab=89.77 E-value=1.6 Score=39.41 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.3
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-++++|++|||||..
T Consensus 45 ~~l~l~G~~GsGKThL 60 (226)
T PRK09087 45 PVVVLAGPVGSGKTHL 60 (226)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5599999999999984
No 476
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.77 E-value=0.69 Score=41.86 Aligned_cols=45 Identities=29% Similarity=0.342 Sum_probs=29.2
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhc
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSR 164 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~ 164 (502)
.+.+|++++|++-+.+.... .. .=+++.++|||||+.. +..++.+
T Consensus 106 ~IPt~eeL~LPevlk~la~~--------------------kR-GLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 106 KIPTFEELKLPEVLKDLALA--------------------KR-GLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cCCcHHhcCCcHHHHHhhcc--------------------cC-ceEEEECCCCCCchhh-HHHHhcc
Confidence 35578888886554443222 10 4588899999999987 4555544
No 477
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=1.6 Score=45.68 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=32.5
Q ss_pred CCceEEEEEeCchhhhcccC--------CHHHHHHHHHHhhhcC--CCeeEEEEeecCChhH
Q 010762 245 FSRLKILVYDEADHMLDEAG--------FRDDSLRIMKDIERSS--GHCQVLLFSATFNETV 296 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~--------~~~~~~~i~~~l~~~~--~~~q~v~~SAT~~~~~ 296 (502)
-...++|.|||.|-+-...| +-..+..++..+.... +...++++.||=.+++
T Consensus 762 ~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 762 SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred ccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 34567899999998764322 1233444555555444 3456888999966655
No 478
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=1.1 Score=46.38 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=30.6
Q ss_pred EEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhh
Q 010762 226 VVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277 (502)
Q Consensus 226 Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~ 277 (502)
-+=+-||++.+.|..-.... -++.+||+|.+.. ..-.+....++..+.
T Consensus 487 YVGAMPGkiIq~LK~v~t~N---PliLiDEvDKlG~-g~qGDPasALLElLD 534 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKTEN---PLILIDEVDKLGS-GHQGDPASALLELLD 534 (906)
T ss_pred eeccCChHHHHHHHhhCCCC---ceEEeehhhhhCC-CCCCChHHHHHHhcC
Confidence 34457999999998743221 2689999999885 123344445555554
No 479
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=0.7 Score=44.45 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=16.5
Q ss_pred CCccEEEECcCCCcchhHh
Q 010762 139 PYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 139 ~~~~~lv~a~TGsGKTl~~ 157 (502)
..+|++..+|+|+|||+.+
T Consensus 383 pfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred hhhheeeeCCCCCCchHHH
Confidence 3579999999999999863
No 480
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=89.56 E-value=1.5 Score=41.63 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+++++.|++|+|||..
T Consensus 65 ~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTH 80 (327)
T ss_pred CcEEEEeCCCChHHHH
Confidence 8899999999999985
No 481
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=89.50 E-value=0.45 Score=43.05 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=24.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
=++++.|++|||||.. ++-++..+.... ..+++++|
T Consensus 14 fr~viIG~sGSGKT~l-i~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTL-IKSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHhhcccC--CEEEEEec
Confidence 4789999999999986 555555543322 35566666
No 482
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=89.39 E-value=5.2 Score=36.51 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=31.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC---------CCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD---------PNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~---------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
.-.++.||.|+|||...+-.+++... ....+.+++|++-- .=..++.+.+..++.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E-d~~~~i~~Rl~~i~~ 65 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE-DPREEIHRRLEAILQ 65 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC-CCHHHHHHHHHHHHh
Confidence 34689999999999876555443221 11245578888822 112234444444443
No 483
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.32 E-value=1.8 Score=47.08 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||..+
T Consensus 348 ~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLG 364 (775)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999853
No 484
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.31 E-value=0.35 Score=46.12 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.5
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+++++.||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999975
No 485
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.31 E-value=0.58 Score=45.41 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=26.0
Q ss_pred cHHHHhhhhhhcC-CCCccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 125 SKIQAISLPMILT-PPYRNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 125 ~~~Q~~~i~~il~-~~~~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.++=.++|..++- |.++..+|.||.|+|||.. +-.+.+.+..
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 3444444444432 3458999999999999975 3335555543
No 486
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.14 E-value=0.86 Score=38.03 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=23.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
..+++.+++|+|||.. +.-+...+.... -.-.-|+||
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g-~kvgGf~t~ 42 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKG-YKVGGFITP 42 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcC-ceeeeEEee
Confidence 5789999999999987 444555554332 112345555
No 487
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.10 E-value=2.5 Score=43.05 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=63.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-cccC------C-CCCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-LARG------F-DQQQVN 420 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-~~~G------l-di~~v~ 420 (502)
..+.+||.+|+++-+......|...|+.+..++++.+..++..++.....+..+++++|.- +... + ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 4578999999999999999999999999999999999999999999999999999999853 2221 2 445677
Q ss_pred EEEEe
Q 010762 421 LIVNY 425 (502)
Q Consensus 421 ~VI~~ 425 (502)
+||.-
T Consensus 130 ~iViD 134 (470)
T TIGR00614 130 LIAVD 134 (470)
T ss_pred EEEEe
Confidence 77753
No 488
>PF12846 AAA_10: AAA-like domain
Probab=89.10 E-value=0.44 Score=45.15 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=28.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 185 (502)
+++++.|+||||||..... ++..+. ..+..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~-l~~~~~--~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKN-LLEQLI--RRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHH-HHHHHH--HcCCCEEEEcCCchHHH
Confidence 6899999999999988654 443332 23456777767655443
No 489
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.02 E-value=0.79 Score=41.89 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=20.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||.|+|||. ++-.+..+..
T Consensus 29 ~i~~iiGpNG~GKST--LLk~l~g~l~ 53 (258)
T COG1120 29 EITGILGPNGSGKST--LLKCLAGLLK 53 (258)
T ss_pred cEEEEECCCCCCHHH--HHHHHhccCC
Confidence 889999999999998 6666666654
No 490
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.99 E-value=0.37 Score=41.58 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=24.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
+=.++.||++||||.- |+-.+.++. ..+.+++++-|..
T Consensus 2 ~l~~i~GpM~sGKS~e-Li~~~~~~~--~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTE-LIRRIHRYE--IAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEEEESTTSSHHHH-HHHHHHHHH--HTT-EEEEEEEST
T ss_pred EEEEEECCcCChhHHH-HHHHHHHHH--hCCCeEEEEEecc
Confidence 3467899999999997 343443332 2455788888763
No 491
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.95 E-value=0.65 Score=44.78 Aligned_cols=64 Identities=23% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 112 LKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 112 ~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
+..+.+ .|+ .++.+...+..+..+. .+++++++||||||.. +-.++..+. ...+++++-.+.||
T Consensus 154 l~~l~~-~g~--~~~~~~~~L~~~v~~~-~~ili~G~tGsGKTTl-l~al~~~i~---~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVA-SGT--FPPGVARLLRAIVAAR-LAFLISGGTGSGKTTL-LSALLALVA---PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHH-cCC--CCHHHHHHHHHHHhCC-CeEEEECCCCCCHHHH-HHHHHccCC---CCCcEEEECCccee
Confidence 344433 454 3456666666665542 8999999999999985 333444432 23456777777676
No 492
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.94 E-value=5.4 Score=40.52 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=54.8
Q ss_pred CcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC-----ccc-cCCCCCCC
Q 010762 351 GQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLA-RGFDQQQV 419 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~-~Gldi~~v 419 (502)
.++||.|+|++-|..+++.++.. ++.+..++|+.+...+...++ ....|+|+|. .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 46899999999999998877653 678899999998766544333 5678999993 222 45788899
Q ss_pred CEEEEecC
Q 010762 420 NLIVNYDP 427 (502)
Q Consensus 420 ~~VI~~~~ 427 (502)
++||.-..
T Consensus 149 ~~lViDEa 156 (460)
T PRK11776 149 NTLVLDEA 156 (460)
T ss_pred CEEEEECH
Confidence 99886443
No 493
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=88.93 E-value=3.8 Score=38.10 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=17.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhcc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
+++++.+|+|+|||.. +-++..+
T Consensus 112 ~~~~i~g~~g~GKttl--~~~l~~~ 134 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL--LRDLARI 134 (270)
T ss_pred eEEEEEcCCCCCHHHH--HHHHhCc
Confidence 6899999999999984 3344443
No 494
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.88 E-value=0.77 Score=52.33 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=43.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
++++|.|+.|||||.+..--++..+........+++|+-|+.-|..+...+....
T Consensus 11 ~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 11 TSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 7899999999999998666666555544455689999999999999888766543
No 495
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=88.87 E-value=0.56 Score=53.10 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=43.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCC--CCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN--LKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~--~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
++++|.|..|||||.+...-++..+... ..-..+|||+-|+..+..+...+..-
T Consensus 17 ~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 17 QSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 7999999999999998766666666653 35558999999999999988876543
No 496
>PRK10263 DNA translocase FtsK; Provisional
Probab=88.84 E-value=1.3 Score=49.42 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=16.9
Q ss_pred ccEEEECcCCCcchhHhHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~i 161 (502)
.+++|.|.||||||.+.-..|
T Consensus 1011 PHLLIAGaTGSGKSv~LntLI 1031 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMI 1031 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHH
Confidence 589999999999999843333
No 497
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.83 E-value=3.8 Score=45.74 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=27.4
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE 294 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~ 294 (502)
..--+||||++|.+.+. ...+.+..++... +++..+|+.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~-~~~~~l~~l~~~~---~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNP-EIHEAMRFFLRHQ---PENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCCh-HHHHHHHHHHHhC---CCCeEEEEEeCCCCC
Confidence 34457999999987542 2333444444443 446778788877543
No 498
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=2.8 Score=41.22 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=43.5
Q ss_pred CceEEEEEeCchhhhcccC-------CHHHHHHHHHHhh-hcCCCeeEEEEeec-CChhHHHHHHHHhcCCceeeecccc
Q 010762 246 SRLKILVYDEADHMLDEAG-------FRDDSLRIMKDIE-RSSGHCQVLLFSAT-FNETVKNFVTRIVKDYNQLFVKKEE 316 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~-------~~~~~~~i~~~l~-~~~~~~q~v~~SAT-~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (502)
....++++||+|.++.... .+-....++.... ...++-++++++|| +|..+.+-+.+.+.
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~----------- 312 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFV----------- 312 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhh-----------
Confidence 3467788999999885321 1111222222221 12234478888998 44454444444322
Q ss_pred cccccceEEEEecCChHHHHHHHHHHHHH
Q 010762 317 LSLESVKQYKVYCPDELAKVMVIRDRIFE 345 (502)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 345 (502)
...|+..++.......+.+++.+
T Consensus 313 ------kr~yiplPd~etr~~~~~~ll~~ 335 (428)
T KOG0740|consen 313 ------KRLYIPLPDYETRSLLWKQLLKE 335 (428)
T ss_pred ------ceeeecCCCHHHHHHHHHHHHHh
Confidence 22345556666666666654443
No 499
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=88.76 E-value=3.5 Score=39.44 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=27.1
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++|+|++|.|... ..+.+++.+...++...+++.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~-----a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQ-----AQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHH-----HHHHHHHHhcCCCCCeEEEEEe
Confidence 457889999999988652 3556777777655455444444
No 500
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.76 E-value=0.62 Score=44.31 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=29.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 185 (502)
+-+.+.+|+|||||...+..+.+... .+..++++.+-..+-.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~ 97 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDP 97 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHH
Confidence 78999999999999875555544332 3557888876555543
Done!