Query 010762
Match_columns 502
No_of_seqs 317 out of 2727
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.4E-65 2.5E-69 508.1 36.4 382 91-491 47-433 (434)
2 3fmp_B ATP-dependent RNA helic 100.0 2.4E-62 8.1E-67 498.0 22.8 390 93-495 85-477 (479)
3 3pey_A ATP-dependent RNA helic 100.0 1.8E-59 6.2E-64 465.9 42.0 387 99-499 4-392 (395)
4 3fht_A ATP-dependent RNA helic 100.0 2E-59 6.9E-64 468.2 42.5 391 91-494 16-409 (412)
5 2j0s_A ATP-dependent RNA helic 100.0 2.3E-60 7.7E-65 474.6 32.5 372 98-489 35-406 (410)
6 2i4i_A ATP-dependent RNA helic 100.0 2.6E-59 8.8E-64 468.1 32.6 383 92-491 7-408 (417)
7 3eiq_A Eukaryotic initiation f 100.0 8.2E-59 2.8E-63 464.1 32.3 376 98-492 38-413 (414)
8 1xti_A Probable ATP-dependent 100.0 8.4E-58 2.9E-62 453.3 33.7 372 99-488 7-380 (391)
9 1s2m_A Putative ATP-dependent 100.0 5.4E-57 1.8E-61 448.8 34.8 371 98-490 19-389 (400)
10 3sqw_A ATP-dependent RNA helic 100.0 3.2E-56 1.1E-60 462.2 32.9 375 99-485 16-417 (579)
11 1fuu_A Yeast initiation factor 100.0 7.7E-58 2.6E-62 454.0 17.2 370 99-489 20-389 (394)
12 3i5x_A ATP-dependent RNA helic 100.0 1.2E-55 4.2E-60 457.8 33.5 368 107-486 79-469 (563)
13 1hv8_A Putative ATP-dependent 100.0 2.5E-54 8.6E-59 424.5 35.7 361 99-486 5-365 (367)
14 3fho_A ATP-dependent RNA helic 100.0 9.4E-56 3.2E-60 450.6 23.4 386 99-498 118-504 (508)
15 2z0m_A 337AA long hypothetical 100.0 4.1E-52 1.4E-56 403.8 31.8 336 107-480 1-336 (337)
16 2v1x_A ATP-dependent DNA helic 100.0 1.3E-51 4.5E-56 423.6 32.8 340 102-465 23-374 (591)
17 3oiy_A Reverse gyrase helicase 100.0 2.9E-51 1E-55 408.8 23.0 342 110-486 9-385 (414)
18 3l9o_A ATP-dependent RNA helic 100.0 3.5E-51 1.2E-55 445.8 25.5 347 99-472 161-604 (1108)
19 1oyw_A RECQ helicase, ATP-depe 100.0 9E-51 3.1E-55 413.5 26.9 338 100-465 2-343 (523)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.5E-46 5.2E-51 399.4 34.4 362 99-486 7-427 (715)
21 2zj8_A DNA helicase, putative 100.0 1.5E-46 5.2E-51 399.2 31.8 350 101-486 2-405 (720)
22 2p6r_A Afuhel308 helicase; pro 100.0 7.8E-48 2.7E-52 407.9 21.2 352 101-486 2-406 (702)
23 4ddu_A Reverse gyrase; topoiso 100.0 2.5E-47 8.4E-52 415.5 25.1 353 113-494 69-523 (1104)
24 1tf5_A Preprotein translocase 100.0 7.7E-48 2.6E-52 395.0 19.4 328 118-467 79-547 (844)
25 2ykg_A Probable ATP-dependent 100.0 3.3E-47 1.1E-51 404.6 24.0 367 114-496 5-551 (696)
26 3tbk_A RIG-I helicase domain; 100.0 1.5E-46 5.1E-51 389.8 26.8 361 123-498 4-544 (555)
27 4a2p_A RIG-I, retinoic acid in 100.0 3.5E-47 1.2E-51 394.5 20.5 333 119-466 3-509 (556)
28 1gku_B Reverse gyrase, TOP-RG; 100.0 3.1E-46 1.1E-50 407.3 19.9 340 111-480 46-468 (1054)
29 2fsf_A Preprotein translocase 100.0 8.5E-46 2.9E-50 378.7 20.8 327 119-467 71-585 (853)
30 4a2q_A RIG-I, retinoic acid in 100.0 2.4E-45 8.1E-50 393.7 25.3 334 119-466 244-750 (797)
31 2xgj_A ATP-dependent RNA helic 100.0 5.6E-44 1.9E-48 386.0 34.0 324 118-472 82-506 (1010)
32 1nkt_A Preprotein translocase 100.0 6.7E-45 2.3E-49 372.3 23.1 331 115-467 104-619 (922)
33 4a2w_A RIG-I, retinoic acid in 100.0 3.6E-44 1.2E-48 388.1 27.2 334 119-466 244-750 (936)
34 4gl2_A Interferon-induced heli 100.0 4.7E-44 1.6E-48 380.5 18.0 328 123-466 7-519 (699)
35 4a4z_A Antiviral helicase SKI2 100.0 2.4E-42 8.2E-47 373.3 30.6 321 117-463 34-490 (997)
36 1wp9_A ATP-dependent RNA helic 100.0 7.8E-43 2.7E-47 356.1 24.8 323 123-466 9-476 (494)
37 2eyq_A TRCF, transcription-rep 100.0 4.2E-42 1.4E-46 376.8 28.7 329 105-465 586-922 (1151)
38 1gm5_A RECG; helicase, replica 100.0 2.7E-43 9.1E-48 369.1 18.0 325 109-464 355-696 (780)
39 4f92_B U5 small nuclear ribonu 100.0 4E-42 1.4E-46 387.0 28.6 348 107-466 911-1309(1724)
40 2whx_A Serine protease/ntpase/ 100.0 1.7E-43 5.8E-48 364.4 14.5 316 105-478 155-493 (618)
41 2xau_A PRE-mRNA-splicing facto 100.0 4.2E-42 1.4E-46 362.7 24.4 341 98-464 70-442 (773)
42 2jlq_A Serine protease subunit 100.0 1.1E-42 3.8E-47 348.4 17.1 288 120-464 1-310 (451)
43 4f92_B U5 small nuclear ribonu 100.0 3.5E-41 1.2E-45 379.4 30.0 340 120-471 76-479 (1724)
44 2oca_A DAR protein, ATP-depend 100.0 1.5E-41 5.1E-46 347.8 18.5 314 121-463 111-453 (510)
45 3o8b_A HCV NS3 protease/helica 100.0 5E-41 1.7E-45 342.3 17.3 276 126-467 220-516 (666)
46 2wv9_A Flavivirin protease NS2 100.0 1.3E-41 4.4E-46 352.4 13.0 316 114-478 202-548 (673)
47 1yks_A Genome polyprotein [con 100.0 1.2E-41 4E-46 339.3 7.5 281 134-478 4-314 (440)
48 3fmo_B ATP-dependent RNA helic 100.0 4.2E-39 1.4E-43 304.6 22.6 213 92-313 84-298 (300)
49 2fwr_A DNA repair protein RAD2 100.0 3.3E-39 1.1E-43 327.2 18.4 292 123-464 93-453 (472)
50 2z83_A Helicase/nucleoside tri 100.0 8E-39 2.7E-43 320.9 14.7 277 133-465 16-313 (459)
51 3h1t_A Type I site-specific re 100.0 5.9E-38 2E-42 326.3 16.0 302 123-454 178-545 (590)
52 2v6i_A RNA helicase; membrane, 100.0 1.8E-37 6E-42 308.6 18.2 269 140-462 2-288 (431)
53 3rc3_A ATP-dependent RNA helic 100.0 1.1E-35 3.9E-40 306.8 29.6 308 127-484 144-462 (677)
54 3fe2_A Probable ATP-dependent 100.0 7.4E-37 2.5E-41 281.3 16.2 216 91-315 20-240 (242)
55 3dmq_A RNA polymerase-associat 100.0 4.3E-36 1.5E-40 325.4 21.6 324 122-462 152-610 (968)
56 3bor_A Human initiation factor 100.0 1.4E-35 4.9E-40 271.7 21.0 210 96-313 26-235 (237)
57 1q0u_A Bstdead; DEAD protein, 100.0 2.1E-35 7.1E-40 267.5 19.5 206 99-313 3-212 (219)
58 2oxc_A Probable ATP-dependent 100.0 2.1E-35 7.1E-40 269.4 18.8 212 92-312 16-228 (230)
59 1wrb_A DJVLGB; RNA helicase, D 100.0 7.5E-36 2.6E-40 276.7 15.8 221 98-324 21-251 (253)
60 1qde_A EIF4A, translation init 100.0 1E-34 3.4E-39 264.2 22.4 208 98-315 12-219 (224)
61 1vec_A ATP-dependent RNA helic 100.0 8.4E-35 2.9E-39 261.1 20.4 202 100-310 3-205 (206)
62 3iuy_A Probable ATP-dependent 100.0 2.8E-35 9.7E-40 268.4 17.2 208 94-311 13-227 (228)
63 1z63_A Helicase of the SNF2/RA 100.0 3.6E-34 1.2E-38 292.3 27.0 311 123-465 37-453 (500)
64 3jux_A Protein translocase sub 100.0 1.6E-33 5.4E-38 282.3 30.5 331 116-467 69-589 (822)
65 3ber_A Probable ATP-dependent 100.0 1.7E-35 5.8E-40 272.7 15.0 206 98-312 41-247 (249)
66 3dkp_A Probable ATP-dependent 100.0 9.9E-35 3.4E-39 267.9 18.6 219 91-315 16-243 (245)
67 2pl3_A Probable ATP-dependent 100.0 2.9E-34 9.8E-39 263.2 17.9 207 97-313 22-233 (236)
68 1t6n_A Probable ATP-dependent 100.0 2.5E-34 8.5E-39 260.7 16.3 206 99-311 13-219 (220)
69 3ly5_A ATP-dependent RNA helic 100.0 1.9E-34 6.5E-39 267.8 15.3 202 98-308 50-258 (262)
70 2gxq_A Heat resistant RNA depe 100.0 1.5E-33 5E-38 253.3 18.0 201 101-312 2-205 (207)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3E-33 1E-37 300.5 21.0 316 122-463 270-707 (1038)
72 3mwy_W Chromo domain-containin 100.0 1.6E-31 5.6E-36 285.5 23.3 333 123-478 236-698 (800)
73 1z3i_X Similar to RAD54-like; 100.0 2.3E-30 7.9E-35 269.9 29.1 323 123-465 55-528 (644)
74 2ipc_A Preprotein translocase 100.0 7.2E-29 2.5E-33 253.3 28.0 134 116-261 73-216 (997)
75 1c4o_A DNA nucleotide excision 100.0 4.1E-29 1.4E-33 260.1 22.9 127 335-465 424-550 (664)
76 2rb4_A ATP-dependent RNA helic 100.0 1.1E-28 3.7E-33 214.6 18.3 165 317-486 3-167 (175)
77 2p6n_A ATP-dependent RNA helic 100.0 4.7E-29 1.6E-33 219.0 14.4 177 301-489 9-185 (191)
78 1t5i_A C_terminal domain of A 100.0 1.7E-28 5.8E-33 212.2 17.1 161 319-490 3-163 (172)
79 1fuk_A Eukaryotic initiation f 100.0 6E-28 2E-32 207.7 18.5 158 321-489 3-160 (165)
80 2hjv_A ATP-dependent RNA helic 100.0 1.6E-27 5.5E-32 204.5 20.1 157 317-485 5-161 (163)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.4E-27 8.2E-32 207.3 14.5 165 316-491 14-178 (185)
82 3eaq_A Heat resistant RNA depe 99.9 1.7E-26 5.8E-31 206.7 19.6 150 332-492 15-165 (212)
83 3i32_A Heat resistant RNA depe 99.9 6.2E-26 2.1E-30 212.3 20.3 159 322-492 3-162 (300)
84 2d7d_A Uvrabc system protein B 99.9 5.8E-26 2E-30 236.3 17.3 218 229-466 320-557 (661)
85 2yjt_D ATP-dependent RNA helic 99.9 4E-27 1.4E-31 203.5 0.0 155 321-486 3-157 (170)
86 2vl7_A XPD; helicase, unknown 99.9 1.2E-23 4.1E-28 214.8 21.9 316 119-463 4-519 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 3E-22 1E-26 205.3 22.0 324 123-463 3-529 (551)
88 3b6e_A Interferon-induced heli 99.9 1.6E-23 5.5E-28 189.0 10.3 167 119-291 29-216 (216)
89 3llm_A ATP-dependent RNA helic 99.9 3.8E-22 1.3E-26 182.0 14.3 159 122-296 60-222 (235)
90 1rif_A DAR protein, DNA helica 99.9 4.9E-22 1.7E-26 186.6 11.6 154 123-296 113-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 2.3E-19 7.9E-24 185.1 19.5 140 349-498 447-611 (620)
92 1z5z_A Helicase of the SNF2/RA 99.8 7.2E-19 2.5E-23 162.6 14.3 127 331-465 93-224 (271)
93 2fz4_A DNA repair protein RAD2 99.8 6.7E-19 2.3E-23 160.1 13.1 138 122-294 92-230 (237)
94 1w36_D RECD, exodeoxyribonucle 98.9 5.8E-09 2E-13 107.6 13.6 146 125-291 151-298 (608)
95 3lfu_A DNA helicase II; SF1 he 98.3 1.3E-05 4.5E-10 83.8 16.5 70 123-196 9-79 (647)
96 3hgt_A HDA1 complex subunit 3; 98.1 4.9E-05 1.7E-09 70.2 14.0 131 332-474 107-246 (328)
97 3upu_A ATP-dependent DNA helic 98.1 5.9E-06 2E-10 82.4 8.0 71 119-191 21-94 (459)
98 3e1s_A Exodeoxyribonuclease V, 98.1 9.5E-06 3.3E-10 82.7 9.2 63 123-190 189-251 (574)
99 2gk6_A Regulator of nonsense t 98.0 2.4E-05 8.1E-10 81.1 10.2 70 121-194 178-247 (624)
100 4b3f_X DNA-binding protein smu 97.9 4.6E-06 1.6E-10 87.0 4.6 68 123-194 189-256 (646)
101 2xzl_A ATP-dependent helicase 97.9 3.5E-05 1.2E-09 81.6 9.9 69 122-194 359-427 (802)
102 2o0j_A Terminase, DNA packagin 97.2 0.0025 8.5E-08 61.1 11.7 73 123-198 163-235 (385)
103 3te6_A Regulatory protein SIR3 97.0 0.003 1E-07 58.9 10.0 32 133-165 38-69 (318)
104 3cpe_A Terminase, DNA packagin 96.9 0.0051 1.7E-07 63.1 11.8 74 123-199 163-236 (592)
105 3ec2_A DNA replication protein 96.9 0.0022 7.4E-08 54.7 7.4 16 141-156 39-54 (180)
106 2wjy_A Regulator of nonsense t 96.9 0.0017 5.8E-08 68.7 7.6 69 122-194 355-423 (800)
107 3vkw_A Replicase large subunit 96.8 0.0013 4.3E-08 63.9 6.0 85 141-259 162-246 (446)
108 2b8t_A Thymidine kinase; deoxy 96.8 0.0083 2.8E-07 52.8 10.6 90 141-260 13-102 (223)
109 1uaa_A REP helicase, protein ( 96.7 0.0021 7.3E-08 67.2 7.1 70 123-196 2-72 (673)
110 1xx6_A Thymidine kinase; NESG, 96.6 0.0035 1.2E-07 53.8 6.3 38 141-181 9-46 (191)
111 1a5t_A Delta prime, HOLB; zinc 96.6 0.016 5.3E-07 54.9 11.4 36 124-159 3-43 (334)
112 2orw_A Thymidine kinase; TMTK, 96.5 0.013 4.5E-07 50.0 9.2 38 141-181 4-41 (184)
113 2kjq_A DNAA-related protein; s 96.4 0.0024 8.4E-08 52.5 4.4 43 246-292 82-124 (149)
114 3bos_A Putative DNA replicatio 96.4 0.0037 1.3E-07 55.9 5.7 17 141-157 53-69 (242)
115 1l8q_A Chromosomal replication 96.4 0.01 3.5E-07 55.8 8.9 16 141-156 38-53 (324)
116 2j9r_A Thymidine kinase; TK1, 96.4 0.006 2.1E-07 52.9 6.6 39 141-182 29-67 (214)
117 2chg_A Replication factor C sm 96.3 0.063 2.2E-06 46.8 13.3 16 141-156 39-54 (226)
118 3u4q_A ATP-dependent helicase/ 96.2 0.0066 2.3E-07 67.9 7.2 69 123-195 10-81 (1232)
119 3vfd_A Spastin; ATPase, microt 96.2 0.042 1.4E-06 53.1 12.2 56 97-157 109-165 (389)
120 1gm5_A RECG; helicase, replica 96.1 0.03 1E-06 59.0 11.3 101 326-426 393-498 (780)
121 4b4t_M 26S protease regulatory 96.1 0.0075 2.6E-07 58.6 6.2 55 97-156 175-231 (434)
122 3u61_B DNA polymerase accessor 96.1 0.045 1.5E-06 51.4 11.5 43 99-157 22-65 (324)
123 1pjr_A PCRA; DNA repair, DNA r 96.0 0.0088 3E-07 63.0 7.0 69 123-195 11-80 (724)
124 3syl_A Protein CBBX; photosynt 96.0 0.013 4.3E-07 54.7 7.2 17 141-157 68-84 (309)
125 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.12 4E-06 46.6 13.2 53 100-157 3-56 (262)
126 2z4s_A Chromosomal replication 95.8 0.023 7.7E-07 55.9 8.5 16 141-156 131-146 (440)
127 2v1u_A Cell division control p 95.8 0.032 1.1E-06 53.7 9.5 18 140-157 44-61 (387)
128 4b4t_J 26S protease regulatory 95.8 0.018 6.2E-07 55.1 7.3 54 98-156 143-198 (405)
129 2orv_A Thymidine kinase; TP4A 95.8 0.021 7.1E-07 50.0 7.1 38 141-181 20-57 (234)
130 3oiy_A Reverse gyrase helicase 95.7 0.052 1.8E-06 52.9 10.7 100 327-426 41-147 (414)
131 3h4m_A Proteasome-activating n 95.7 0.07 2.4E-06 48.9 11.0 54 99-157 13-68 (285)
132 1d2n_A N-ethylmaleimide-sensit 95.6 0.096 3.3E-06 47.7 11.6 18 140-157 64-81 (272)
133 3eie_A Vacuolar protein sortin 95.6 0.068 2.3E-06 50.1 10.6 53 98-157 13-68 (322)
134 2zpa_A Uncharacterized protein 95.6 0.028 9.6E-07 57.4 8.1 61 123-189 175-235 (671)
135 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.15 5.3E-06 47.6 12.8 52 99-157 8-62 (322)
136 1w4r_A Thymidine kinase; type 95.5 0.018 6.3E-07 49.0 5.7 38 140-180 20-57 (195)
137 3kl4_A SRP54, signal recogniti 95.5 0.038 1.3E-06 53.8 8.5 133 140-303 97-234 (433)
138 3cf0_A Transitional endoplasmi 95.4 0.12 4.2E-06 47.8 11.5 54 99-157 11-66 (301)
139 4b4t_H 26S protease regulatory 95.4 0.032 1.1E-06 54.3 7.5 54 98-156 204-259 (467)
140 1sxj_E Activator 1 40 kDa subu 95.2 0.2 7E-06 47.4 12.7 44 99-157 10-53 (354)
141 3e2i_A Thymidine kinase; Zn-bi 95.2 0.017 5.8E-07 50.0 4.3 39 141-182 29-67 (219)
142 2gno_A DNA polymerase III, gam 95.1 0.085 2.9E-06 48.9 9.4 40 245-289 80-119 (305)
143 1fnn_A CDC6P, cell division co 95.1 0.094 3.2E-06 50.4 10.0 16 142-157 46-61 (389)
144 3co5_A Putative two-component 95.0 0.026 9E-07 45.8 4.9 16 141-156 28-43 (143)
145 1lv7_A FTSH; alpha/beta domain 95.0 0.29 9.9E-06 44.0 12.4 53 99-156 8-61 (257)
146 1iqp_A RFCS; clamp loader, ext 95.0 0.16 5.3E-06 47.5 11.0 43 99-157 21-63 (327)
147 2d7d_A Uvrabc system protein B 95.0 0.024 8.3E-07 58.8 5.7 69 123-197 12-83 (661)
148 4b4t_L 26S protease subunit RP 95.0 0.03 1E-06 54.5 5.9 54 98-156 176-231 (437)
149 4b4t_K 26S protease regulatory 94.9 0.06 2.1E-06 52.2 8.0 54 98-156 167-222 (428)
150 2qby_B CDC6 homolog 3, cell di 94.9 0.048 1.7E-06 52.4 7.2 18 140-157 45-62 (384)
151 4ddu_A Reverse gyrase; topoiso 94.6 0.096 3.3E-06 57.6 9.6 101 326-426 97-204 (1104)
152 4b4t_I 26S protease regulatory 94.6 0.044 1.5E-06 52.8 6.0 55 97-156 176-232 (437)
153 3cf2_A TER ATPase, transitiona 94.6 0.079 2.7E-06 55.7 8.4 56 97-157 471-528 (806)
154 2w58_A DNAI, primosome compone 94.6 0.1 3.5E-06 44.9 8.0 17 141-157 55-71 (202)
155 1jr3_A DNA polymerase III subu 94.5 0.46 1.6E-05 45.2 13.1 17 141-157 39-55 (373)
156 2qby_A CDC6 homolog 1, cell di 94.5 0.2 6.9E-06 47.9 10.6 18 140-157 45-62 (386)
157 2qgz_A Helicase loader, putati 94.4 0.083 2.8E-06 49.1 7.3 17 141-157 153-169 (308)
158 1njg_A DNA polymerase III subu 94.4 0.68 2.3E-05 40.6 13.3 17 141-157 46-62 (250)
159 2chq_A Replication factor C sm 94.3 0.35 1.2E-05 44.9 11.6 43 99-157 13-55 (319)
160 1sxj_B Activator 1 37 kDa subu 94.3 0.13 4.6E-06 47.8 8.7 17 141-157 43-59 (323)
161 3b9p_A CG5977-PA, isoform A; A 94.2 0.24 8.4E-06 45.5 10.1 55 98-157 16-71 (297)
162 1ixz_A ATP-dependent metallopr 94.0 0.53 1.8E-05 42.1 11.7 54 98-156 11-65 (254)
163 2dr3_A UPF0273 protein PH0284; 93.9 0.28 9.7E-06 43.5 9.7 49 141-193 24-72 (247)
164 3pfi_A Holliday junction ATP-d 93.9 0.11 3.7E-06 49.0 7.2 45 100-157 26-72 (338)
165 1sxj_C Activator 1 40 kDa subu 93.8 0.4 1.4E-05 45.1 11.0 16 142-157 48-63 (340)
166 3dm5_A SRP54, signal recogniti 93.7 0.25 8.6E-06 48.0 9.4 133 140-303 100-235 (443)
167 2eyq_A TRCF, transcription-rep 93.7 0.29 1E-05 54.1 11.0 100 325-424 627-731 (1151)
168 2qp9_X Vacuolar protein sortin 93.7 0.17 5.9E-06 48.0 8.2 52 99-157 47-101 (355)
169 1sxj_A Activator 1 95 kDa subu 93.5 0.23 7.8E-06 49.9 9.1 17 141-157 78-94 (516)
170 1sxj_D Activator 1 41 kDa subu 93.4 0.15 5.3E-06 48.2 7.4 17 141-157 59-75 (353)
171 1t6n_A Probable ATP-dependent 93.3 0.87 3E-05 39.5 11.5 97 326-425 55-165 (220)
172 2zan_A Vacuolar protein sortin 93.1 0.17 5.8E-06 49.7 7.2 53 98-157 129-184 (444)
173 3hu3_A Transitional endoplasmi 93.0 0.18 6.3E-06 50.0 7.4 17 141-157 239-255 (489)
174 2px0_A Flagellar biosynthesis 92.6 0.24 8.3E-06 45.6 7.1 18 140-157 105-122 (296)
175 1iy2_A ATP-dependent metallopr 92.6 1.3 4.4E-05 40.2 12.1 54 98-156 35-89 (278)
176 2ce7_A Cell division protein F 92.6 0.33 1.1E-05 47.8 8.5 54 99-157 12-66 (476)
177 1g5t_A COB(I)alamin adenosyltr 92.4 0.68 2.3E-05 39.4 9.0 35 141-178 29-63 (196)
178 1vec_A ATP-dependent RNA helic 91.9 2.5 8.4E-05 36.1 12.5 122 349-481 70-202 (206)
179 3bor_A Human initiation factor 91.9 2.9 9.9E-05 36.7 13.2 96 326-424 71-179 (237)
180 2gxq_A Heat resistant RNA depe 91.7 2.2 7.6E-05 36.3 12.1 96 326-425 42-151 (207)
181 1cr0_A DNA primase/helicase; R 91.5 0.39 1.3E-05 44.1 7.3 19 141-159 36-54 (296)
182 3fe2_A Probable ATP-dependent 91.5 6 0.0002 34.7 15.0 72 349-424 101-182 (242)
183 3pvs_A Replication-associated 91.3 0.35 1.2E-05 47.4 7.0 17 141-157 51-67 (447)
184 1w5s_A Origin recognition comp 91.2 0.55 1.9E-05 45.3 8.3 17 141-157 51-69 (412)
185 3ber_A Probable ATP-dependent 90.9 6.4 0.00022 34.8 14.5 72 349-424 110-192 (249)
186 1oyw_A RECQ helicase, ATP-depe 90.7 1.5 5E-05 44.0 11.1 97 325-424 43-145 (523)
187 2dhr_A FTSH; AAA+ protein, hex 90.7 3.6 0.00012 40.7 13.6 54 98-156 26-80 (499)
188 1nlf_A Regulatory protein REPA 90.5 1.1 3.6E-05 40.8 9.1 25 135-161 27-51 (279)
189 1vma_A Cell division protein F 90.4 0.75 2.6E-05 42.5 7.9 17 141-157 105-121 (306)
190 2w0m_A SSO2452; RECA, SSPF, un 90.4 0.74 2.5E-05 40.3 7.7 18 141-158 24-41 (235)
191 1n0w_A DNA repair protein RAD5 90.2 1.3 4.5E-05 39.0 9.3 39 141-179 25-66 (243)
192 2pl3_A Probable ATP-dependent 90.0 1.9 6.4E-05 37.9 10.1 71 349-424 96-177 (236)
193 3n70_A Transport activator; si 89.7 0.5 1.7E-05 38.1 5.5 17 141-157 25-41 (145)
194 2l8b_A Protein TRAI, DNA helic 89.7 0.28 9.6E-06 40.9 3.9 61 124-186 35-95 (189)
195 2v1x_A ATP-dependent DNA helic 89.0 1.3 4.4E-05 45.2 9.1 80 326-408 63-144 (591)
196 3jvv_A Twitching mobility prot 89.0 0.36 1.2E-05 45.7 4.7 16 141-156 124-139 (356)
197 3hjh_A Transcription-repair-co 88.9 1.4 4.8E-05 43.5 9.0 64 350-425 382-445 (483)
198 3e70_C DPA, signal recognition 88.9 1 3.6E-05 41.9 7.7 55 247-304 211-265 (328)
199 1r6b_X CLPA protein; AAA+, N-t 88.7 1.3 4.5E-05 46.7 9.3 19 139-157 206-224 (758)
200 3k1j_A LON protease, ATP-depen 88.7 1.7 5.8E-05 44.4 9.9 20 136-157 58-77 (604)
201 2z43_A DNA repair and recombin 88.4 1.1 3.6E-05 41.9 7.5 55 140-194 107-165 (324)
202 1qde_A EIF4A, translation init 88.3 2.1 7E-05 37.2 9.0 94 326-424 55-161 (224)
203 3cmu_A Protein RECA, recombina 88.2 0.49 1.7E-05 54.6 5.7 39 140-181 1427-1465(2050)
204 1xti_A Probable ATP-dependent 88.1 4.8 0.00016 38.2 12.2 96 326-424 49-158 (391)
205 2oxc_A Probable ATP-dependent 88.0 3.7 0.00013 35.8 10.5 94 326-424 65-172 (230)
206 3iuy_A Probable ATP-dependent 87.8 3.5 0.00012 35.8 10.2 72 349-424 93-173 (228)
207 1xp8_A RECA protein, recombina 87.7 1.3 4.3E-05 42.1 7.5 37 141-180 75-111 (366)
208 1p9r_A General secretion pathw 87.5 0.58 2E-05 45.3 5.1 24 141-165 168-191 (418)
209 1v5w_A DMC1, meiotic recombina 87.4 1.9 6.6E-05 40.5 8.6 42 140-181 122-166 (343)
210 1qvr_A CLPB protein; coiled co 86.7 0.66 2.2E-05 49.7 5.5 23 134-156 185-207 (854)
211 3cf2_A TER ATPase, transitiona 86.6 1.5 5E-05 46.2 7.9 17 140-156 238-254 (806)
212 3pxi_A Negative regulator of g 86.6 2.4 8.2E-05 44.7 9.7 16 142-157 523-538 (758)
213 3io5_A Recombination and repai 86.5 0.63 2.1E-05 42.9 4.4 90 142-260 30-124 (333)
214 2yhs_A FTSY, cell division pro 86.1 1.4 4.8E-05 43.4 7.0 58 246-303 374-434 (503)
215 1ypw_A Transitional endoplasmi 85.9 1.8 6.1E-05 46.0 8.2 17 140-156 238-254 (806)
216 1wrb_A DJVLGB; RNA helicase, D 85.1 6.8 0.00023 34.6 10.8 71 350-424 100-180 (253)
217 1gku_B Reverse gyrase, TOP-RG; 85.0 2.3 7.9E-05 46.6 8.8 92 331-424 80-181 (1054)
218 3m6a_A ATP-dependent protease 84.6 1 3.5E-05 45.3 5.5 16 141-156 109-124 (543)
219 1hv8_A Putative ATP-dependent 84.3 14 0.00047 34.4 13.2 94 326-424 48-153 (367)
220 3u4q_B ATP-dependent helicase/ 83.8 0.84 2.9E-05 50.8 4.8 38 144-181 5-42 (1166)
221 3ly5_A ATP-dependent RNA helic 83.5 8.4 0.00029 34.3 10.7 72 349-424 125-207 (262)
222 1e9r_A Conjugal transfer prote 83.4 0.84 2.9E-05 44.6 4.2 42 141-185 54-95 (437)
223 1wp9_A ATP-dependent RNA helic 83.3 6.3 0.00021 38.4 10.7 95 326-425 27-132 (494)
224 3hr8_A Protein RECA; alpha and 83.3 0.72 2.5E-05 43.5 3.4 38 141-181 62-99 (356)
225 1s2m_A Putative ATP-dependent 83.3 16 0.00056 34.5 13.4 96 326-425 62-170 (400)
226 1jbk_A CLPB protein; beta barr 83.2 0.76 2.6E-05 38.5 3.4 18 140-157 43-60 (195)
227 2rb4_A ATP-dependent RNA helic 83.1 1.2 4.2E-05 37.0 4.5 95 144-253 12-108 (175)
228 1qvr_A CLPB protein; coiled co 83.0 4.4 0.00015 43.4 9.8 17 141-157 589-605 (854)
229 2zr9_A Protein RECA, recombina 83.0 0.47 1.6E-05 44.8 2.1 37 141-180 62-98 (349)
230 2x8a_A Nuclear valosin-contain 82.8 0.37 1.3E-05 43.8 1.2 54 98-156 5-60 (274)
231 1ls1_A Signal recognition part 82.8 3.8 0.00013 37.4 8.1 16 141-156 99-114 (295)
232 2r6a_A DNAB helicase, replicat 82.8 4.9 0.00017 39.3 9.4 38 140-179 203-240 (454)
233 2oap_1 GSPE-2, type II secreti 82.4 0.92 3.1E-05 45.2 4.0 16 141-156 261-276 (511)
234 2p65_A Hypothetical protein PF 82.4 0.82 2.8E-05 38.2 3.2 18 140-157 43-60 (187)
235 1q0u_A Bstdead; DEAD protein, 82.3 4.2 0.00014 35.0 8.0 95 326-424 45-156 (219)
236 4a2p_A RIG-I, retinoic acid in 81.4 5 0.00017 40.2 9.2 73 350-426 55-138 (556)
237 2gza_A Type IV secretion syste 81.0 1.1 3.8E-05 42.4 3.9 23 141-165 176-198 (361)
238 1fuu_A Yeast initiation factor 80.9 17 0.00059 34.2 12.5 95 325-424 61-168 (394)
239 2hjv_A ATP-dependent RNA helic 80.6 1 3.6E-05 37.0 3.1 90 151-255 20-111 (163)
240 3hix_A ALR3790 protein; rhodan 80.2 3.1 0.00011 31.2 5.5 39 347-385 49-88 (106)
241 1yks_A Genome polyprotein [con 79.9 3.6 0.00012 40.1 7.2 69 171-252 177-245 (440)
242 2j0s_A ATP-dependent RNA helic 79.7 17 0.00058 34.6 12.0 95 326-424 78-185 (410)
243 3cmu_A Protein RECA, recombina 79.6 3.4 0.00012 47.9 7.7 45 140-188 1081-1125(2050)
244 3gk5_A Uncharacterized rhodane 79.4 1.9 6.4E-05 32.6 4.0 38 348-385 53-90 (108)
245 2l82_A Designed protein OR32; 78.9 9.6 0.00033 28.0 7.3 51 353-403 5-55 (162)
246 2pt7_A CAG-ALFA; ATPase, prote 78.7 1.2 4.2E-05 41.6 3.3 24 141-166 172-195 (330)
247 1kgd_A CASK, peripheral plasma 78.6 0.94 3.2E-05 38.0 2.3 16 141-156 6-21 (180)
248 3iij_A Coilin-interacting nucl 78.5 1 3.4E-05 37.7 2.4 17 141-157 12-28 (180)
249 3dkp_A Probable ATP-dependent 78.5 4.1 0.00014 35.8 6.6 97 326-425 70-182 (245)
250 2bjv_A PSP operon transcriptio 77.8 3.1 0.00011 37.2 5.6 16 141-156 30-45 (265)
251 3b85_A Phosphate starvation-in 77.6 1.9 6.6E-05 37.1 4.0 30 125-156 9-38 (208)
252 2r62_A Cell division protease 77.6 0.97 3.3E-05 40.7 2.2 17 141-157 45-61 (268)
253 3fmo_B ATP-dependent RNA helic 77.5 8.1 0.00028 35.3 8.5 69 350-425 162-242 (300)
254 2ffh_A Protein (FFH); SRP54, s 77.5 20 0.00068 34.5 11.4 42 141-185 99-142 (425)
255 3foj_A Uncharacterized protein 77.3 2.1 7.2E-05 31.7 3.7 37 349-385 55-91 (100)
256 2db3_A ATP-dependent RNA helic 77.3 8.6 0.00029 37.3 9.1 71 350-424 129-209 (434)
257 2ewv_A Twitching motility prot 77.2 0.9 3.1E-05 43.3 1.9 16 141-156 137-152 (372)
258 3g5j_A Putative ATP/GTP bindin 76.9 3.7 0.00013 32.1 5.3 38 349-386 87-126 (134)
259 3eaq_A Heat resistant RNA depe 76.8 1.3 4.6E-05 38.2 2.8 74 170-253 30-105 (212)
260 4a2q_A RIG-I, retinoic acid in 76.6 6.6 0.00022 41.6 8.6 96 326-425 267-378 (797)
261 1t5i_A C_terminal domain of A 76.3 6.4 0.00022 32.4 6.8 90 151-255 16-107 (172)
262 3t15_A Ribulose bisphosphate c 76.3 2 6.8E-05 39.3 3.9 16 141-156 37-52 (293)
263 2qmh_A HPR kinase/phosphorylas 76.0 1.5 5.1E-05 37.4 2.7 16 141-156 35-50 (205)
264 2eyu_A Twitching motility prot 76.0 1.5 5E-05 39.5 2.9 16 141-156 26-41 (261)
265 3eme_A Rhodanese-like domain p 76.0 2.1 7.2E-05 31.9 3.4 38 348-385 54-91 (103)
266 1fuk_A Eukaryotic initiation f 75.9 1.9 6.5E-05 35.4 3.4 88 153-255 17-106 (165)
267 2ius_A DNA translocase FTSK; n 75.8 2.6 8.9E-05 41.8 4.8 17 141-157 168-184 (512)
268 1wv9_A Rhodanese homolog TT165 75.7 3 0.0001 30.4 4.1 35 351-385 54-88 (94)
269 3iwh_A Rhodanese-like domain p 75.7 2.4 8E-05 31.8 3.5 37 348-384 54-90 (103)
270 3tbk_A RIG-I helicase domain; 75.5 4.5 0.00016 40.5 6.8 72 350-425 52-134 (555)
271 1w36_B RECB, exodeoxyribonucle 75.5 3.7 0.00013 45.7 6.5 54 142-195 18-80 (1180)
272 3d8b_A Fidgetin-like protein 1 75.3 2.8 9.5E-05 39.6 4.8 54 99-157 80-134 (357)
273 2yjt_D ATP-dependent RNA helic 77.1 0.59 2E-05 38.8 0.0 74 170-253 29-104 (170)
274 4ag6_A VIRB4 ATPase, type IV s 75.0 1.9 6.5E-05 41.4 3.6 40 141-183 36-75 (392)
275 2zts_A Putative uncharacterize 75.0 1.8 6.3E-05 38.1 3.3 51 140-193 30-80 (251)
276 3trf_A Shikimate kinase, SK; a 74.9 1.3 4.4E-05 37.2 2.1 17 141-157 6-22 (185)
277 3a8t_A Adenylate isopentenyltr 74.9 1.5 5E-05 40.9 2.6 17 141-157 41-57 (339)
278 2i1q_A DNA repair and recombin 74.9 3 0.0001 38.6 4.9 55 140-194 98-166 (322)
279 2q5c_A NTRC family transcripti 74.9 21 0.00072 30.1 9.8 131 350-500 4-142 (196)
280 3exa_A TRNA delta(2)-isopenten 74.6 1.4 4.6E-05 40.6 2.2 17 141-157 4-20 (322)
281 3eiq_A Eukaryotic initiation f 74.4 20 0.00069 34.0 10.9 96 326-424 81-189 (414)
282 2jgn_A DBX, DDX3, ATP-dependen 74.2 2.8 9.4E-05 35.3 4.0 90 150-253 29-120 (185)
283 1qhx_A CPT, protein (chloramph 74.2 1.5 5E-05 36.5 2.3 17 141-157 4-20 (178)
284 2r2a_A Uncharacterized protein 74.1 2.3 7.7E-05 36.4 3.4 23 141-163 6-28 (199)
285 3b6e_A Interferon-induced heli 74.0 5 0.00017 34.2 5.8 97 325-425 51-169 (216)
286 2c9o_A RUVB-like 1; hexameric 74.0 2.6 8.8E-05 41.4 4.3 17 141-157 64-80 (456)
287 3uk6_A RUVB-like 2; hexameric 74.0 3.4 0.00012 39.0 5.1 17 141-157 71-87 (368)
288 3foz_A TRNA delta(2)-isopenten 74.0 1.4 4.7E-05 40.5 2.1 17 141-157 11-27 (316)
289 3vaa_A Shikimate kinase, SK; s 73.9 1.5 5E-05 37.4 2.2 17 141-157 26-42 (199)
290 2qor_A Guanylate kinase; phosp 73.8 1.5 5.2E-05 37.5 2.3 16 141-156 13-28 (204)
291 2cvh_A DNA repair and recombin 73.7 2.2 7.5E-05 36.8 3.4 32 141-178 21-52 (220)
292 3dmn_A Putative DNA helicase; 73.7 36 0.0012 27.9 11.7 87 327-428 38-124 (174)
293 2ykg_A Probable ATP-dependent 73.7 6.3 0.00022 40.9 7.5 72 351-426 62-144 (696)
294 3lw7_A Adenylate kinase relate 73.6 1.4 4.6E-05 36.4 1.9 17 141-157 2-18 (179)
295 3nbx_X ATPase RAVA; AAA+ ATPas 73.4 2.8 9.4E-05 41.6 4.3 29 126-156 29-57 (500)
296 1ojl_A Transcriptional regulat 73.4 3.7 0.00013 37.7 5.0 17 141-157 26-42 (304)
297 2j41_A Guanylate kinase; GMP, 73.2 1.6 5.4E-05 37.3 2.3 16 141-156 7-22 (207)
298 3cmw_A Protein RECA, recombina 73.0 3.5 0.00012 47.0 5.5 91 140-261 1431-1523(1706)
299 1zp6_A Hypothetical protein AT 72.9 1.3 4.6E-05 37.2 1.7 16 141-156 10-25 (191)
300 2v9p_A Replication protein E1; 72.8 1.6 5.6E-05 40.0 2.4 16 141-156 127-142 (305)
301 2ze6_A Isopentenyl transferase 72.7 1.4 4.9E-05 39.3 1.9 16 142-157 3-18 (253)
302 1lvg_A Guanylate kinase, GMP k 72.7 1.5 5.3E-05 37.3 2.1 16 141-156 5-20 (198)
303 3a00_A Guanylate kinase, GMP k 72.3 1.7 5.9E-05 36.5 2.3 16 141-156 2-17 (186)
304 1hqc_A RUVB; extended AAA-ATPa 72.2 3.9 0.00013 37.7 4.9 16 141-156 39-54 (324)
305 1j8m_F SRP54, signal recogniti 72.1 23 0.0008 32.1 10.0 17 141-157 99-115 (297)
306 3tau_A Guanylate kinase, GMP k 72.1 2.2 7.5E-05 36.7 2.9 16 141-156 9-24 (208)
307 1bg2_A Kinesin; motor protein, 72.0 1.9 6.3E-05 40.1 2.6 26 131-156 69-94 (325)
308 3tr0_A Guanylate kinase, GMP k 72.0 1.7 5.9E-05 37.0 2.3 16 141-156 8-23 (205)
309 1u0j_A DNA replication protein 71.9 5.9 0.0002 35.4 5.7 45 110-158 74-122 (267)
310 1f9v_A Kinesin-like protein KA 71.8 2.1 7.2E-05 40.1 2.9 27 131-157 76-102 (347)
311 3tif_A Uncharacterized ABC tra 71.7 2.3 7.9E-05 37.4 3.0 25 141-167 32-56 (235)
312 3nwn_A Kinesin-like protein KI 71.7 1.7 5.9E-05 40.9 2.3 26 131-156 96-121 (359)
313 1tue_A Replication protein E1; 71.7 1.9 6.4E-05 37.0 2.3 46 109-157 28-75 (212)
314 3hws_A ATP-dependent CLP prote 71.6 1.6 5.6E-05 41.3 2.2 17 141-157 52-68 (363)
315 3pey_A ATP-dependent RNA helic 71.5 11 0.00039 35.4 8.3 79 170-258 242-322 (395)
316 1kag_A SKI, shikimate kinase I 71.5 1.8 6.2E-05 35.7 2.2 16 141-156 5-20 (173)
317 2j37_W Signal recognition part 71.5 10 0.00035 37.5 7.8 42 141-185 102-145 (504)
318 3t0q_A AGR253WP; kinesin, alph 71.4 2.2 7.6E-05 40.0 2.9 27 131-157 77-103 (349)
319 4gp7_A Metallophosphoesterase; 71.1 1.7 5.8E-05 36.0 1.9 18 141-158 10-27 (171)
320 2i4i_A ATP-dependent RNA helic 71.1 20 0.00068 34.1 9.9 70 351-424 102-181 (417)
321 1ofh_A ATP-dependent HSL prote 71.1 1.7 5.9E-05 39.8 2.2 17 141-157 51-67 (310)
322 1kht_A Adenylate kinase; phosp 71.1 1.8 6.2E-05 36.3 2.1 17 141-157 4-20 (192)
323 2iut_A DNA translocase FTSK; n 70.9 3.5 0.00012 41.4 4.3 23 141-163 215-237 (574)
324 2fsx_A RV0390, COG0607: rhodan 70.6 8.3 0.00028 30.8 6.0 38 348-385 78-116 (148)
325 3l9o_A ATP-dependent RNA helic 70.6 5 0.00017 44.1 6.0 70 344-424 221-296 (1108)
326 2p6n_A ATP-dependent RNA helic 70.5 3.6 0.00012 34.8 3.9 87 151-253 40-128 (191)
327 4etp_A Kinesin-like protein KA 70.2 2.1 7.3E-05 41.0 2.6 27 131-157 132-158 (403)
328 1nij_A Hypothetical protein YJ 70.2 2.1 7.1E-05 39.7 2.5 16 141-156 5-20 (318)
329 2y65_A Kinesin, kinesin heavy 70.1 2.1 7.3E-05 40.3 2.6 25 132-156 77-101 (365)
330 1goj_A Kinesin, kinesin heavy 70.1 2.2 7.6E-05 40.1 2.7 25 132-156 73-97 (355)
331 3ney_A 55 kDa erythrocyte memb 69.9 2.8 9.5E-05 35.7 3.0 16 141-156 20-35 (197)
332 1ly1_A Polynucleotide kinase; 69.8 1.9 6.4E-05 35.8 1.9 17 141-157 3-19 (181)
333 2vvg_A Kinesin-2; motor protei 69.7 2.2 7.6E-05 40.0 2.6 25 132-156 82-106 (350)
334 1mv5_A LMRA, multidrug resista 69.7 3.7 0.00013 36.3 3.9 25 141-167 29-53 (243)
335 1y63_A LMAJ004144AAA protein; 69.6 2 6.9E-05 36.0 2.1 17 141-157 11-27 (184)
336 4g1u_C Hemin import ATP-bindin 69.6 3.8 0.00013 36.8 4.0 25 141-167 38-62 (266)
337 1ex7_A Guanylate kinase; subst 69.6 2.1 7.2E-05 36.1 2.2 16 141-156 2-17 (186)
338 1v8k_A Kinesin-like protein KI 69.6 2 7E-05 41.1 2.3 25 133-157 148-172 (410)
339 3kb2_A SPBC2 prophage-derived 69.5 2 6.7E-05 35.4 2.0 16 142-157 3-18 (173)
340 3bh0_A DNAB-like replicative h 69.0 4.1 0.00014 37.6 4.2 48 141-192 69-116 (315)
341 3dc4_A Kinesin-like protein NO 68.9 2 6.7E-05 40.2 2.0 25 132-156 87-111 (344)
342 3lre_A Kinesin-like protein KI 68.9 2.4 8.4E-05 39.8 2.7 25 132-156 98-122 (355)
343 3bfn_A Kinesin-like protein KI 68.8 2.6 8.8E-05 40.1 2.8 24 133-156 92-115 (388)
344 4a14_A Kinesin, kinesin-like p 68.8 2.4 8.2E-05 39.7 2.6 27 131-157 75-101 (344)
345 2h58_A Kinesin-like protein KI 68.7 2.5 8.7E-05 39.3 2.7 26 131-156 72-97 (330)
346 2r44_A Uncharacterized protein 68.6 1.6 5.5E-05 40.7 1.4 16 141-156 47-62 (331)
347 3b6u_A Kinesin-like protein KI 68.3 2.2 7.7E-05 40.3 2.3 25 132-156 94-118 (372)
348 3crm_A TRNA delta(2)-isopenten 68.3 2.6 8.7E-05 39.0 2.6 17 141-157 6-22 (323)
349 3cm0_A Adenylate kinase; ATP-b 68.1 1.9 6.4E-05 36.1 1.6 17 141-157 5-21 (186)
350 3ilm_A ALR3790 protein; rhodan 68.0 7.2 0.00025 31.0 5.0 39 347-385 53-92 (141)
351 2zfi_A Kinesin-like protein KI 67.9 2.6 9E-05 39.8 2.7 26 131-156 81-106 (366)
352 1t5c_A CENP-E protein, centrom 67.9 2.4 8.3E-05 39.7 2.4 25 132-156 70-94 (349)
353 1gmx_A GLPE protein; transfera 67.8 8.1 0.00028 28.8 5.1 40 347-386 55-95 (108)
354 4a2w_A RIG-I, retinoic acid in 67.8 9.6 0.00033 41.2 7.4 96 326-425 267-378 (936)
355 1znw_A Guanylate kinase, GMP k 67.8 2.4 8.3E-05 36.3 2.3 20 135-156 17-36 (207)
356 1z6g_A Guanylate kinase; struc 67.8 2.5 8.5E-05 36.7 2.3 16 141-156 24-39 (218)
357 3ipz_A Monothiol glutaredoxin- 67.8 25 0.00087 26.2 7.9 48 349-396 16-69 (109)
358 1knq_A Gluconate kinase; ALFA/ 67.6 2.3 8E-05 35.1 2.1 17 141-157 9-25 (175)
359 3d3q_A TRNA delta(2)-isopenten 67.1 2.8 9.5E-05 39.1 2.6 17 141-157 8-24 (340)
360 3u06_A Protein claret segregat 67.1 2.5 8.5E-05 40.6 2.3 26 131-156 130-155 (412)
361 2nr8_A Kinesin-like protein KI 67.1 2.5 8.4E-05 39.8 2.3 26 131-156 95-120 (358)
362 4eun_A Thermoresistant glucoki 67.0 2.6 8.8E-05 35.9 2.2 16 141-156 30-45 (200)
363 1rj9_A FTSY, signal recognitio 66.8 3.7 0.00013 37.7 3.4 36 140-178 102-137 (304)
364 3gfo_A Cobalt import ATP-bindi 66.8 3.3 0.00011 37.4 3.0 25 141-167 35-59 (275)
365 2heh_A KIF2C protein; kinesin, 66.8 2.5 8.6E-05 40.1 2.3 26 132-157 127-152 (387)
366 3gbj_A KIF13B protein; kinesin 66.7 2.6 9E-05 39.6 2.4 26 131-156 84-109 (354)
367 2ghi_A Transport protein; mult 66.5 4 0.00014 36.5 3.5 25 141-167 47-71 (260)
368 1s96_A Guanylate kinase, GMP k 66.5 2.7 9.1E-05 36.6 2.2 16 141-156 17-32 (219)
369 2z0m_A 337AA long hypothetical 66.4 25 0.00087 32.0 9.3 92 325-424 34-135 (337)
370 3cob_A Kinesin heavy chain-lik 66.2 2.2 7.5E-05 40.3 1.7 26 131-156 71-96 (369)
371 3t61_A Gluconokinase; PSI-biol 66.2 3.1 0.00011 35.4 2.6 17 141-157 19-35 (202)
372 1x88_A Kinesin-like protein KI 66.2 2.4 8.1E-05 40.0 2.0 26 131-156 80-105 (359)
373 1sgw_A Putative ABC transporte 66.1 3.7 0.00013 35.5 3.1 24 141-166 36-59 (214)
374 1um8_A ATP-dependent CLP prote 66.1 2.5 8.5E-05 40.2 2.2 17 141-157 73-89 (376)
375 1tq1_A AT5G66040, senescence-a 65.9 4.5 0.00016 31.5 3.3 39 347-385 79-118 (129)
376 2qt1_A Nicotinamide riboside k 65.7 2.3 7.8E-05 36.4 1.6 22 133-156 16-37 (207)
377 1ukz_A Uridylate kinase; trans 65.7 2.8 9.5E-05 35.7 2.2 17 141-157 16-32 (203)
378 3pxg_A Negative regulator of g 65.6 3.2 0.00011 40.8 2.9 18 140-157 201-218 (468)
379 1zuh_A Shikimate kinase; alpha 65.5 2.7 9.1E-05 34.5 2.0 18 141-158 8-25 (168)
380 1qxn_A SUD, sulfide dehydrogen 65.4 5.3 0.00018 31.6 3.7 38 348-385 80-118 (137)
381 1tev_A UMP-CMP kinase; ploop, 65.4 2.6 8.9E-05 35.4 1.9 17 141-157 4-20 (196)
382 2ff7_A Alpha-hemolysin translo 65.3 3.7 0.00013 36.4 3.0 24 141-166 36-59 (247)
383 2bdt_A BH3686; alpha-beta prot 65.2 2.4 8.1E-05 35.7 1.6 17 141-157 3-19 (189)
384 2rep_A Kinesin-like protein KI 65.1 3.2 0.00011 39.3 2.6 26 131-156 107-132 (376)
385 3flh_A Uncharacterized protein 65.1 3.8 0.00013 31.7 2.7 38 348-385 69-108 (124)
386 3zyw_A Glutaredoxin-3; metal b 64.9 26 0.0009 26.3 7.4 47 349-395 14-66 (111)
387 2fsf_A Preprotein translocase 64.9 20 0.00068 37.7 8.6 70 349-424 114-200 (853)
388 2wbe_C Bipolar kinesin KRP-130 64.9 2.6 8.9E-05 39.9 2.0 26 131-156 92-117 (373)
389 2qi9_C Vitamin B12 import ATP- 64.8 4.7 0.00016 35.8 3.6 25 141-167 27-51 (249)
390 4fcw_A Chaperone protein CLPB; 64.7 2.6 8.9E-05 38.7 2.0 17 141-157 48-64 (311)
391 1ye8_A Protein THEP1, hypothet 64.6 2.8 9.7E-05 35.0 2.0 15 142-156 2-16 (178)
392 3nhv_A BH2092 protein; alpha-b 64.6 5.3 0.00018 31.9 3.6 37 349-385 71-109 (144)
393 2pcj_A ABC transporter, lipopr 64.6 3.6 0.00012 35.8 2.7 24 141-166 31-54 (224)
394 2k0z_A Uncharacterized protein 64.5 9.4 0.00032 28.6 4.8 39 347-385 53-91 (110)
395 1g8p_A Magnesium-chelatase 38 64.4 2.5 8.5E-05 39.6 1.8 17 141-157 46-62 (350)
396 2pze_A Cystic fibrosis transme 64.4 4 0.00014 35.7 3.0 24 141-166 35-58 (229)
397 1vee_A Proline-rich protein fa 64.3 15 0.0005 28.7 6.1 38 348-385 72-110 (134)
398 2owm_A Nckin3-434, related to 64.3 3 0.0001 40.5 2.4 27 131-157 128-154 (443)
399 3c8u_A Fructokinase; YP_612366 64.2 3.1 0.00011 35.6 2.2 16 141-156 23-38 (208)
400 1gvn_B Zeta; postsegregational 64.2 2.8 9.7E-05 38.1 2.1 17 141-157 34-50 (287)
401 3nh6_A ATP-binding cassette SU 63.8 3.2 0.00011 38.2 2.3 25 141-167 81-105 (306)
402 3nwj_A ATSK2; P loop, shikimat 63.7 3.4 0.00012 36.7 2.4 20 136-157 46-65 (250)
403 1g6h_A High-affinity branched- 63.7 4.1 0.00014 36.3 3.0 24 141-166 34-57 (257)
404 3lnc_A Guanylate kinase, GMP k 63.6 2.6 8.7E-05 36.9 1.6 16 141-156 28-43 (231)
405 3eph_A TRNA isopentenyltransfe 63.6 3.3 0.00011 39.6 2.4 17 141-157 3-19 (409)
406 1b0u_A Histidine permease; ABC 63.4 4.2 0.00014 36.4 3.0 24 141-166 33-56 (262)
407 1ji0_A ABC transporter; ATP bi 63.4 4.3 0.00015 35.8 3.0 24 141-166 33-56 (240)
408 2rhm_A Putative kinase; P-loop 63.2 2.7 9.2E-05 35.3 1.6 17 141-157 6-22 (193)
409 2ehv_A Hypothetical protein PH 63.2 3.9 0.00013 35.9 2.8 18 141-158 31-48 (251)
410 2olj_A Amino acid ABC transpor 63.1 4.3 0.00015 36.4 3.0 24 141-166 51-74 (263)
411 2v54_A DTMP kinase, thymidylat 63.0 3.4 0.00011 35.1 2.2 17 141-157 5-21 (204)
412 2cbz_A Multidrug resistance-as 63.0 4.2 0.00014 35.8 2.9 23 141-165 32-54 (237)
413 1via_A Shikimate kinase; struc 63.0 3.3 0.00011 34.3 2.1 17 141-157 5-21 (175)
414 2fz4_A DNA repair protein RAD2 62.8 21 0.00072 31.1 7.5 85 326-426 112-200 (237)
415 1vpl_A ABC transporter, ATP-bi 62.6 4.5 0.00015 36.1 3.0 24 141-166 42-65 (256)
416 3uie_A Adenylyl-sulfate kinase 62.5 3.3 0.00011 35.2 2.1 16 141-156 26-41 (200)
417 2plr_A DTMP kinase, probable t 62.5 3.3 0.00011 35.4 2.1 17 141-157 5-21 (213)
418 2ixe_A Antigen peptide transpo 62.4 4.5 0.00015 36.4 3.0 25 141-167 46-70 (271)
419 1tf5_A Preprotein translocase 62.3 28 0.00097 36.6 9.2 70 349-424 123-209 (844)
420 3i32_A Heat resistant RNA depe 62.0 3.2 0.00011 38.1 2.0 88 151-253 13-102 (300)
421 3bgw_A DNAB-like replicative h 61.9 5 0.00017 39.1 3.5 37 140-179 197-233 (444)
422 2wv9_A Flavivirin protease NS2 61.9 10 0.00035 39.1 5.9 69 171-252 410-478 (673)
423 2cdn_A Adenylate kinase; phosp 61.6 3.7 0.00013 34.9 2.2 17 141-157 21-37 (201)
424 2iyv_A Shikimate kinase, SK; t 61.6 3.7 0.00013 34.2 2.2 17 141-157 3-19 (184)
425 2yz2_A Putative ABC transporte 61.5 4.8 0.00016 36.1 3.0 24 141-166 34-57 (266)
426 2hhg_A Hypothetical protein RP 61.5 6.1 0.00021 31.2 3.4 37 349-385 85-122 (139)
427 1ak2_A Adenylate kinase isoenz 61.5 3.9 0.00013 35.8 2.4 17 141-157 17-33 (233)
428 1pzn_A RAD51, DNA repair and r 61.4 6.1 0.00021 37.1 3.9 40 140-179 131-173 (349)
429 3b9q_A Chloroplast SRP recepto 61.4 3.8 0.00013 37.6 2.4 35 141-178 101-135 (302)
430 1f2t_A RAD50 ABC-ATPase; DNA d 61.3 3.5 0.00012 33.2 1.9 16 141-156 24-39 (149)
431 3fb4_A Adenylate kinase; psych 61.2 3.4 0.00012 35.5 1.9 16 142-157 2-17 (216)
432 2p6r_A Afuhel308 helicase; pro 61.1 15 0.0005 38.2 7.1 93 325-424 43-144 (702)
433 2pjz_A Hypothetical protein ST 61.0 5.8 0.0002 35.5 3.5 24 141-166 31-54 (263)
434 1e6c_A Shikimate kinase; phosp 60.9 3.8 0.00013 33.7 2.1 17 141-157 3-19 (173)
435 2ihy_A ABC transporter, ATP-bi 60.7 5 0.00017 36.3 3.0 24 141-166 48-71 (279)
436 2nq2_C Hypothetical ABC transp 60.7 4.6 0.00016 35.9 2.7 24 141-166 32-55 (253)
437 2c95_A Adenylate kinase 1; tra 60.5 3.7 0.00013 34.6 2.0 17 141-157 10-26 (196)
438 1m7g_A Adenylylsulfate kinase; 60.4 4.5 0.00016 34.7 2.6 17 141-157 26-42 (211)
439 3dl0_A Adenylate kinase; phosp 60.3 3.5 0.00012 35.4 1.9 16 142-157 2-17 (216)
440 3tqc_A Pantothenate kinase; bi 60.3 7.3 0.00025 36.0 4.1 15 142-156 94-108 (321)
441 2jtq_A Phage shock protein E; 60.1 18 0.00063 25.3 5.5 37 348-385 39-76 (85)
442 1in4_A RUVB, holliday junction 60.1 4.8 0.00017 37.5 2.9 16 141-156 52-67 (334)
443 3d1p_A Putative thiosulfate su 60.0 7.6 0.00026 30.6 3.7 37 349-385 90-127 (139)
444 1aky_A Adenylate kinase; ATP:A 59.9 3.9 0.00013 35.3 2.1 17 141-157 5-21 (220)
445 1zd8_A GTP:AMP phosphotransfer 59.8 3.5 0.00012 35.8 1.8 17 141-157 8-24 (227)
446 1nks_A Adenylate kinase; therm 59.8 3.4 0.00012 34.6 1.6 16 142-157 3-18 (194)
447 2xxa_A Signal recognition part 59.6 37 0.0013 32.7 9.2 43 141-185 101-145 (433)
448 3umf_A Adenylate kinase; rossm 59.6 4.8 0.00016 34.8 2.6 18 141-158 30-47 (217)
449 1u94_A RECA protein, recombina 59.5 6.1 0.00021 37.2 3.5 36 141-179 64-99 (356)
450 2bwj_A Adenylate kinase 5; pho 59.4 3.7 0.00013 34.6 1.8 17 141-157 13-29 (199)
451 2fwr_A DNA repair protein RAD2 59.2 18 0.00062 35.3 7.1 68 325-408 111-179 (472)
452 1zak_A Adenylate kinase; ATP:A 58.9 3.9 0.00013 35.4 1.9 17 141-157 6-22 (222)
453 3pxi_A Negative regulator of g 58.9 4.8 0.00016 42.4 2.9 18 140-157 201-218 (758)
454 4a74_A DNA repair and recombin 58.9 4.5 0.00015 35.0 2.3 19 141-159 26-44 (231)
455 3sr0_A Adenylate kinase; phosp 58.9 5.1 0.00017 34.3 2.6 18 142-159 2-19 (206)
456 1xjc_A MOBB protein homolog; s 58.8 5.2 0.00018 33.0 2.5 16 141-156 5-20 (169)
457 3asz_A Uridine kinase; cytidin 58.7 3.8 0.00013 35.1 1.8 16 141-156 7-22 (211)
458 2pez_A Bifunctional 3'-phospho 58.7 4.3 0.00015 33.7 2.1 16 141-156 6-21 (179)
459 4gl2_A Interferon-induced heli 58.6 3.2 0.00011 43.2 1.5 71 351-425 57-143 (699)
460 2vli_A Antibiotic resistance p 58.5 3.9 0.00013 34.0 1.8 18 141-158 6-23 (183)
461 1cke_A CK, MSSA, protein (cyti 58.5 4.3 0.00015 35.2 2.1 17 141-157 6-22 (227)
462 4a1f_A DNAB helicase, replicat 58.4 6.4 0.00022 36.7 3.4 36 141-179 47-82 (338)
463 3qf7_A RAD50; ABC-ATPase, ATPa 58.1 3.9 0.00013 38.7 1.9 17 141-157 24-40 (365)
464 2pt5_A Shikimate kinase, SK; a 58.0 4.4 0.00015 33.1 2.0 16 142-157 2-17 (168)
465 3f9v_A Minichromosome maintena 57.9 4.8 0.00016 41.0 2.6 15 142-156 329-343 (595)
466 1jjv_A Dephospho-COA kinase; P 57.8 4.2 0.00014 34.6 1.9 16 142-157 4-19 (206)
467 2onk_A Molybdate/tungstate ABC 57.7 5.7 0.0002 35.0 2.8 24 141-166 25-48 (240)
468 1qf9_A UMP/CMP kinase, protein 57.7 3.9 0.00013 34.2 1.6 17 141-157 7-23 (194)
469 2bbw_A Adenylate kinase 4, AK4 57.6 4.4 0.00015 35.7 2.1 16 141-156 28-43 (246)
470 1ry6_A Internal kinesin; kines 57.5 4.3 0.00015 38.2 2.0 16 142-157 87-102 (360)
471 2og2_A Putative signal recogni 57.5 4.6 0.00016 38.0 2.2 35 141-178 158-192 (359)
472 3fht_A ATP-dependent RNA helic 57.4 12 0.0004 35.6 5.3 73 171-253 266-340 (412)
473 3aez_A Pantothenate kinase; tr 57.2 4.8 0.00016 37.1 2.3 16 141-156 91-106 (312)
474 2yvu_A Probable adenylyl-sulfa 57.2 4.7 0.00016 33.7 2.1 17 141-157 14-30 (186)
475 3lda_A DNA repair protein RAD5 57.1 8.6 0.0003 36.8 4.1 40 140-179 178-220 (400)
476 1g41_A Heat shock protein HSLU 57.0 4.6 0.00016 39.2 2.2 17 141-157 51-67 (444)
477 2p5t_B PEZT; postsegregational 56.8 4 0.00014 36.3 1.6 17 141-157 33-49 (253)
478 2jaq_A Deoxyguanosine kinase; 56.7 4.5 0.00015 34.2 1.9 15 142-156 2-16 (205)
479 3kta_A Chromosome segregation 56.6 5.6 0.00019 33.0 2.5 16 141-156 27-42 (182)
480 2ipc_A Preprotein translocase 56.3 38 0.0013 35.9 8.9 75 328-409 98-177 (997)
481 2yan_A Glutaredoxin-3; oxidore 56.2 40 0.0014 24.7 7.1 55 350-404 16-76 (105)
482 2if2_A Dephospho-COA kinase; a 56.0 4.3 0.00015 34.5 1.6 16 142-157 3-18 (204)
483 2zu0_C Probable ATP-dependent 55.9 6.4 0.00022 35.3 2.9 23 141-165 47-69 (267)
484 2xau_A PRE-mRNA-splicing facto 55.9 20 0.00069 37.6 7.0 78 170-253 302-393 (773)
485 2r8r_A Sensor protein; KDPD, P 55.7 6.1 0.00021 34.3 2.5 21 141-161 7-27 (228)
486 2d2e_A SUFC protein; ABC-ATPas 55.6 6.6 0.00023 34.8 2.9 23 141-165 30-52 (250)
487 2oca_A DAR protein, ATP-depend 55.3 24 0.0008 34.9 7.2 92 326-424 132-231 (510)
488 2i3b_A HCR-ntpase, human cance 55.3 7.3 0.00025 32.8 3.0 16 141-156 2-17 (189)
489 3a4m_A L-seryl-tRNA(SEC) kinas 55.2 4.8 0.00016 35.9 1.9 17 141-157 5-21 (260)
490 2pbr_A DTMP kinase, thymidylat 55.1 5 0.00017 33.6 1.9 16 142-157 2-17 (195)
491 1htw_A HI0065; nucleotide-bind 55.0 5.5 0.00019 32.4 2.1 16 141-156 34-49 (158)
492 3i5x_A ATP-dependent RNA helic 55.0 51 0.0017 32.9 9.8 71 351-424 147-232 (563)
493 1np6_A Molybdopterin-guanine d 54.9 7.5 0.00026 32.2 2.9 16 141-156 7-22 (174)
494 3gx8_A Monothiol glutaredoxin- 54.8 51 0.0018 25.1 7.6 47 349-395 14-69 (121)
495 1e4v_A Adenylate kinase; trans 54.8 4.5 0.00015 34.7 1.6 16 142-157 2-17 (214)
496 1nkt_A Preprotein translocase 54.5 39 0.0013 35.7 8.6 70 349-424 151-237 (922)
497 2z0h_A DTMP kinase, thymidylat 54.4 5.2 0.00018 33.6 1.9 15 143-157 3-17 (197)
498 2z83_A Helicase/nucleoside tri 54.3 24 0.00083 34.4 7.0 69 171-252 190-258 (459)
499 3sqw_A ATP-dependent RNA helic 54.2 53 0.0018 33.0 9.8 72 350-424 95-181 (579)
500 3tlx_A Adenylate kinase 2; str 54.1 5.2 0.00018 35.3 1.9 17 141-157 30-46 (243)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.4e-65 Score=508.14 Aligned_cols=382 Identities=30% Similarity=0.453 Sum_probs=331.5
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC--
Q 010762 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN-- 168 (502)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~-- 168 (502)
.+..++.+..+|+++++++.+++++.+ +||..|||+|+++||.++.| +|++++||||||||++|++|++.++...
T Consensus 47 ~~~~~p~~~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~~~ 123 (434)
T 2db3_A 47 TGSDVPQPIQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSG--RDLMACAQTGSGKTAAFLLPILSKLLEDPH 123 (434)
T ss_dssp ESSSCCCCCCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCCCCcCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CCEEEECCCCCCchHHHHHHHHHHHHhccc
Confidence 455667788999999999999999987 99999999999999999999 9999999999999999999999887432
Q ss_pred ---CCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCC
Q 010762 169 ---LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245 (502)
Q Consensus 169 ---~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 245 (502)
..++++||++||++|+.|+++.+++++...++.+.+++++...... ......+++|+|+||++|.+++....+.+
T Consensus 124 ~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l 201 (434)
T 2db3_A 124 ELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ--NECITRGCHVVIATPGRLLDFVDRTFITF 201 (434)
T ss_dssp CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHH--HHHHTTCCSEEEECHHHHHHHHHTTSCCC
T ss_pred ccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHH--HHHhhcCCCEEEEChHHHHHHHHhCCccc
Confidence 2467999999999999999999999998888888888777654321 11223468999999999999999888889
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEE
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY 325 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (502)
.++++||+||||+|++ .+|...+..++..+.. .+.+|+++||||++..+..++..++.++..+...........+.+.
T Consensus 202 ~~~~~lVlDEah~~~~-~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~ 279 (434)
T 2db3_A 202 EDTRFVVLDEADRMLD-MGFSEDMRRIMTHVTM-RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQT 279 (434)
T ss_dssp TTCCEEEEETHHHHTS-TTTHHHHHHHHHCTTS-CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEE
T ss_pred ccCCeEEEccHhhhhc-cCcHHHHHHHHHhcCC-CCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceE
Confidence 9999999999999998 4899999988877532 3478999999999999999999999888877777666666777777
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv 405 (502)
+..+.. ..+...+...+... ..++||||++++.|+.++..|...++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 280 ~~~~~~-~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 355 (434)
T 2db3_A 280 IYEVNK-YAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLI 355 (434)
T ss_dssp EEECCG-GGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEE
T ss_pred EEEeCc-HHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 776654 44556666544443 34599999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccc
Q 010762 406 STDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485 (502)
Q Consensus 406 ~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 485 (502)
||+++++|+|+|++++||+||+| .++.+|+||+||+||.|+.|.+++|+.+.++..+...+.+.+....+++
T Consensus 356 aT~v~~rGlDi~~v~~VI~~d~p--------~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~v 427 (434)
T 2db3_A 356 ATSVASRGLDIKNIKHVINYDMP--------SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTV 427 (434)
T ss_dssp ECGGGTSSCCCTTCCEEEESSCC--------SSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCC
T ss_pred EchhhhCCCCcccCCEEEEECCC--------CCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999 7899999999999999999999999998778888899999998888888
Q ss_pred cCCHHH
Q 010762 486 RNSDED 491 (502)
Q Consensus 486 ~~~~~~ 491 (502)
|..+.+
T Consensus 428 p~~l~~ 433 (434)
T 2db3_A 428 PDFLRT 433 (434)
T ss_dssp CGGGC-
T ss_pred CHHHHh
Confidence 765543
No 2
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.4e-62 Score=497.95 Aligned_cols=390 Identities=39% Similarity=0.709 Sum_probs=177.3
Q ss_pred CCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCC
Q 010762 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP 172 (502)
Q Consensus 93 ~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~ 172 (502)
..|..+..+|++++|++.+++.|.. +||..|+|+|.++||.++.+.+++++++||||||||++|++|++..+.....++
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~ 163 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 163 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSC
T ss_pred CCCccCcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCC
Confidence 3444567899999999999999997 999999999999999999875689999999999999999999999998777777
Q ss_pred eEEEecCcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-CccCCCceEE
Q 010762 173 QALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKI 250 (502)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~ 250 (502)
++|||+|+++|+.|+++.+.++.... ++.+.+..++.... ......++|+|+||++|.+++.. ..+.+.++++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 238 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-----RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-----TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-----ccccCCCCEEEECchHHHHHHHhcCCcCcccCCE
Confidence 99999999999999999999987654 34554554443322 12233578999999999999966 4567789999
Q ss_pred EEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecC
Q 010762 251 LVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330 (502)
Q Consensus 251 lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (502)
|||||||++.+..+|...+..++..+.. .+|++++|||++..+..+...++..+..+...........+.+.+..+.
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 315 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPR---NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 315 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSCT---TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCCc---cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeC
Confidence 9999999999755777777766655543 7899999999999999999999988888887777777777888887777
Q ss_pred ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc
Q 010762 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (502)
Q Consensus 331 ~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~ 410 (502)
....+...+...+... ..+++||||+++..|..++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++
T Consensus 316 ~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~ 393 (479)
T 3fmp_B 316 SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcccc
Confidence 6666666655533322 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc-CCH
Q 010762 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSD 489 (502)
Q Consensus 411 ~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~ 489 (502)
++|+|+|++++||+||+|+.... ..+...|+||+||+||.|+.|.|++|+.+.++..+++.+++.++..++++. ..+
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~--~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 471 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDG--NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL 471 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCcc--CCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccH
Confidence 99999999999999999964322 136788999999999999999999999988888999999999999999997 556
Q ss_pred HHHHHH
Q 010762 490 EDFKAA 495 (502)
Q Consensus 490 ~~~~~~ 495 (502)
+++++.
T Consensus 472 ~~~e~~ 477 (479)
T 3fmp_B 472 DEIEKI 477 (479)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 666543
No 3
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.8e-59 Score=465.87 Aligned_cols=387 Identities=43% Similarity=0.746 Sum_probs=336.9
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+++++++.+++.+.+ +||..|+|+|.++++.++.+.++++++++|||+|||++|++|++..+.....++++||++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4689999999999999987 999999999999999999986689999999999999999999999987776778999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
|+++|+.|+++.+++++...++.+....++.... .....++|+|+||++|.+++......+.++++||+||||+
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh
Confidence 9999999999999999887777766665544222 1223579999999999999988878899999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
+.+..++...+..+...++. ..|++++|||+++.+..+...++..+..+...........+.+.+..+.....+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPK---DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDV 233 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCT---TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCC---CcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHH
Confidence 99855777777766665544 789999999999999999999988888877777777777888888888777777777
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~ 418 (502)
+...+ ... ..+++||||+++..++.++..|+..++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 234 l~~~~-~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 234 LTELY-GLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHH-TTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHH-Hhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 66533 322 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhC-Ccccccc-CCHHHHHHHH
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD-IKVTEVR-NSDEDFKAAL 496 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~-~~~~~~~~~~ 496 (502)
+++||+||+|+.... ..|+..|+||+||+||.|+.|.+++|+.+.++...+..+++.++ .++.+++ .+++.+++.+
T Consensus 312 ~~~Vi~~~~p~~~~~--~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 389 (395)
T 3pey_A 312 VSMVVNYDLPTLANG--QADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIV 389 (395)
T ss_dssp EEEEEESSCCBCTTS--SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHHHHH
T ss_pred CCEEEEcCCCCCCcC--CCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHHHHH
Confidence 999999999942111 02789999999999999999999999998888889999999999 8898888 7888898888
Q ss_pred HHc
Q 010762 497 KAA 499 (502)
Q Consensus 497 ~~~ 499 (502)
+++
T Consensus 390 ~~~ 392 (395)
T 3pey_A 390 KKV 392 (395)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 4
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2e-59 Score=468.23 Aligned_cols=391 Identities=39% Similarity=0.706 Sum_probs=331.7
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCC
Q 010762 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK 170 (502)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~ 170 (502)
....|..+..+|+++++++.+++.+.+ +||..|+|+|.++++.++.+.+++++++||||||||++|++|++..+.....
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~ 94 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 94 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC
Confidence 344566678899999999999999987 9999999999999999998755899999999999999999999999887777
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-CccCCCce
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRL 248 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~ 248 (502)
++++||++|+++|+.|+++.++++.... ++.+....++.... ......++|+|+||++|.+++.. ..+.+.++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-----RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-----TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-----hhhcCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 7899999999999999999999987764 45555555444322 12234579999999999999866 55677899
Q ss_pred EEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEe
Q 010762 249 KILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY 328 (502)
Q Consensus 249 ~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (502)
++||+||||++.+..++...+..+...+.. .+|++++|||++..+..+...++..+..+...........+.+.+..
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPR---NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL 246 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCT---TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEE
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCC---CceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEE
Confidence 999999999998756788777777666554 78999999999999999999999888888887777778888888888
Q ss_pred cCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC
Q 010762 329 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD 408 (502)
Q Consensus 329 ~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~ 408 (502)
+.....+...+...+... ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 247 ~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 247 CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp CSSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred cCChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 888888888777755443 567999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc-C
Q 010762 409 VLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-N 487 (502)
Q Consensus 409 ~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~ 487 (502)
++++|+|+|++++||+||+|+.... ..+...|+||+||+||.|+.|.+++|+.+.++..++..+++.++..+++++ +
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~--~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDG--NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSS--SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC---
T ss_pred ccccCCCccCCCEEEEECCCCCCCC--CcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCc
Confidence 9999999999999999999964322 136789999999999999999999999887778999999999999999997 4
Q ss_pred CHHHHHH
Q 010762 488 SDEDFKA 494 (502)
Q Consensus 488 ~~~~~~~ 494 (502)
..+++++
T Consensus 403 ~~~~~~~ 409 (412)
T 3fht_A 403 DLDEIEK 409 (412)
T ss_dssp -------
T ss_pred cHHHHHH
Confidence 5555544
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.3e-60 Score=474.58 Aligned_cols=372 Identities=35% Similarity=0.604 Sum_probs=325.4
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
...+|+++++++.+++++.. +||..|+|+|.++++.++.| +++++++|||||||++|++|++..+.....+.++||+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~--~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 111 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALIL 111 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEE
T ss_pred CCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEE
Confidence 45689999999999999987 99999999999999999998 9999999999999999999999998766677899999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+||++|+.|+++.+.+++...++.+...+++...... ......+++|+|+||++|.+++....+.+.++++||+||||
T Consensus 112 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah 189 (410)
T 2j0s_A 112 APTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGED--IRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 189 (410)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHH--HHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred cCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH--HHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH
Confidence 9999999999999999998888877777665533221 11112347899999999999999888888999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 337 (502)
++.+ .+|...+..++..++. ..|++++|||++..+..+...++..+..+...........+.+.+..+.....+..
T Consensus 190 ~~~~-~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 265 (410)
T 2j0s_A 190 EMLN-KGFKEQIYDVYRYLPP---ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD 265 (410)
T ss_dssp HHTS-TTTHHHHHHHHTTSCT---TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHH
T ss_pred HHHh-hhhHHHHHHHHHhCcc---CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHH
Confidence 9987 4788877777665543 78999999999998888877888888777777667777788888888877776777
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
.+...+... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 266 ~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 266 TLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 777655443 456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCH
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 489 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 489 (502)
++++||+||+| .+...|+||+||+||.|+.|.|++|+.+ ++...+..++++++..+++++.+.
T Consensus 344 ~v~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 344 QVSLIINYDLP--------NNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp TEEEEEESSCC--------SSHHHHHHHHTTSSGGGCCEEEEEEEEG-GGHHHHHHHHHHTTCCCEECCSCC
T ss_pred cCCEEEEECCC--------CCHHHHHHhcccccCCCCceEEEEEecH-HHHHHHHHHHHHhCCCceecccch
Confidence 99999999999 7899999999999999999999999985 577889999999999999998543
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-59 Score=468.13 Aligned_cols=383 Identities=29% Similarity=0.472 Sum_probs=315.8
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC---
Q 010762 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--- 168 (502)
Q Consensus 92 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~--- 168 (502)
+...+.+..+|+++++++.+++.|.. +||..|+|+|.++||.++.| +|++++||||||||++|++|++..+...
T Consensus 7 ~~~~p~~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 7 GNNCPPHIESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEK--RDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp STTCCCCCSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred CCcCCcccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccC--CCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 44455667889999999999999986 99999999999999999998 9999999999999999999999876422
Q ss_pred ---------------CCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchH
Q 010762 169 ---------------LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGT 233 (502)
Q Consensus 169 ---------------~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~ 233 (502)
..++++||++||++|+.|+++.+++++...++.+...+++...... ......+++|+|+||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ--IRDLERGCHLLVATPGR 161 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHH--HHHHTTCCSEEEECHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHH--HHHhhCCCCEEEEChHH
Confidence 1236899999999999999999999988878877777766543221 11122358999999999
Q ss_pred HHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhc-CCCeeEEEEeecCChhHHHHHHHHhcCCceeee
Q 010762 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS-SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312 (502)
Q Consensus 234 l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 312 (502)
|.+++....+.+.++++||+||||++.+. +|...+..++...... ....|++++|||++..+..++..++..+..+..
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDM-GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 240 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHT-TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhcc-CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEe
Confidence 99999988888999999999999999974 7888887776643221 226799999999999999988888888877766
Q ss_pred cccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHH
Q 010762 313 KKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 392 (502)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~ 392 (502)
.........+.+.+..+.. ..+...+...+. .....+++||||++++.++.++..|...++.+..+||++++.+|..+
T Consensus 241 ~~~~~~~~~i~~~~~~~~~-~~~~~~l~~~l~-~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 241 GRVGSTSENITQKVVWVEE-SDKRSFLLDLLN-ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 318 (417)
T ss_dssp C----CCSSEEEEEEECCG-GGHHHHHHHHHH-TCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred CCCCCCccCceEEEEEecc-HhHHHHHHHHHH-hcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHH
Confidence 6655566667777666654 445555555443 34467899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHH
Q 010762 393 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472 (502)
Q Consensus 393 ~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 472 (502)
++.|++|+.+|||||+++++|+|+|++++||+|++| .|+..|+||+||+||.|+.|.|++|+.+ .+...+.
T Consensus 319 ~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~ 389 (417)
T 2i4i_A 319 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP--------SDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITK 389 (417)
T ss_dssp HHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCC--------SSHHHHHHHHTTBCC--CCEEEEEEECG-GGGGGHH
T ss_pred HHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCC--------CCHHHHHHhcCccccCCCCceEEEEEcc-ccHHHHH
Confidence 999999999999999999999999999999999999 7899999999999999999999999985 5666778
Q ss_pred HHHHHhCCccccccCCHHH
Q 010762 473 KIERYFDIKVTEVRNSDED 491 (502)
Q Consensus 473 ~i~~~l~~~~~~~~~~~~~ 491 (502)
.+.+.+.....+++..+++
T Consensus 390 ~l~~~~~~~~~~~~~~l~~ 408 (417)
T 2i4i_A 390 DLLDLLVEAKQEVPSWLEN 408 (417)
T ss_dssp HHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHhcCcCCHHHHH
Confidence 8888887776666544443
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.2e-59 Score=464.08 Aligned_cols=376 Identities=36% Similarity=0.612 Sum_probs=312.1
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
...+|+++++++.+++.+.+ +||..|+|+|.++|+.++.| +++++++|||||||++|++|++..+.....+.++||+
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 114 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL 114 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred hhcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCC--CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEE
Confidence 35689999999999999987 99999999999999999998 9999999999999999999999998776677899999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+|+++|+.|+++.+++++...+..+...+++..... .........++|+|+||++|.+++....+.+.++++||+||||
T Consensus 115 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 115 APTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA-EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp CSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH-HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred eChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH-HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 999999999999999999888877776666553322 1122222467999999999999999888888999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 337 (502)
++.+ .+|...+..++..+.. ..|++++|||++..+..+...++.++..+...........+.+.+..+.....+..
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 194 EMLS-RGFKDQIYDIFQKLNS---NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp HHHH-TTTHHHHHHHHTTSCT---TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHH
T ss_pred Hhhc-cCcHHHHHHHHHhCCC---CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHH
Confidence 9987 4788777777666544 78999999999999998888888888888777777777888888888877777777
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
.+...+... ..+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 270 ~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 270 TLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 776644333 567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHHHH
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDEDF 492 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 492 (502)
++++||+|++| .|...|+||+||+||.|+.|.|++|+.+ .+...+..++++++..+++++.++.++
T Consensus 348 ~v~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 348 QVSLVINYDLP--------TNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GCSCEEESSCC--------SSTHHHHHHSCCC-------CEEEEECS-THHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCCEEEEeCCC--------CCHHHhhhhcCcccCCCCCceEEEEEcH-HHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999 7899999999999999999999999985 577788999999999999998776654
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8.4e-58 Score=453.26 Aligned_cols=372 Identities=30% Similarity=0.509 Sum_probs=313.3
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+++++++.+++.|.. +||..|+|+|.++++.++.| +++++++|||+|||++|++|++..+.....+.++||+|
T Consensus 7 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 83 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 83 (391)
T ss_dssp --CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTT--CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEEC
Confidence 3579999999999999987 99999999999999999998 99999999999999999999999887666677999999
Q ss_pred CcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
|+++|+.|+.+.+.++.... ++.+....++....... .......++|+|+||++|..++......+.++++||+||||
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH-HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 99999999999999998765 56666666554322111 11111236899999999999998887788999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccc-cccccceEEEEecCChHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEE-LSLESVKQYKVYCPDELAKV 336 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~ 336 (502)
++.+..++...+..++.... ...|++++|||++..+...+..++..+..+...... .....+.+.+..+. ...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 238 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTP---HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK-DNEKN 238 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSC---SSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC-GGGHH
T ss_pred HHhhccchHHHHHHHHhhCC---CCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC-chhHH
Confidence 99875466666666655443 377999999999999999888888887766654433 23445566665554 34455
Q ss_pred HHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCC
Q 010762 337 MVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416 (502)
Q Consensus 337 ~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi 416 (502)
..+...+... ..+++||||++++.+..++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+
T Consensus 239 ~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi 316 (391)
T 1xti_A 239 RKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI 316 (391)
T ss_dssp HHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCC
T ss_pred HHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCc
Confidence 5555544433 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCC
Q 010762 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNS 488 (502)
Q Consensus 417 ~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 488 (502)
|++++||+|++| .|+..|+||+||+||.|+.|.|++|+.+.++..++..+++.++..+++++..
T Consensus 317 ~~~~~Vi~~~~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 317 ERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp TTEEEEEESSCC--------SSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred ccCCEEEEeCCC--------CCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999 7899999999999999999999999998778889999999999999999854
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.4e-57 Score=448.76 Aligned_cols=371 Identities=36% Similarity=0.589 Sum_probs=311.1
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
...+|+++++++.++++|.+ +||..|+|+|.++++.++.| +++++++|||+|||++|++|++..+.....+.++||+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 95 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIM 95 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHT--CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 45689999999999999987 99999999999999999998 9999999999999999999999998776677799999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+|+++|+.|+++.+++++...++.+....++...... .......++|+|+||++|.+++......+.++++||+||||
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDD--ILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHH--HHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH--HHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 9999999999999999988888877766665432211 11123467999999999999998877788999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 337 (502)
++.+. +|...+..++..+. +..|++++|||++..+..++...+..+..+.... ......+.+++..+. ...+..
T Consensus 174 ~~~~~-~~~~~~~~i~~~~~---~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~k~~ 247 (400)
T 1s2m_A 174 KMLSR-DFKTIIEQILSFLP---PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVE-ERQKLH 247 (400)
T ss_dssp HHSSH-HHHHHHHHHHTTSC---SSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECC-GGGHHH
T ss_pred Hhhhh-chHHHHHHHHHhCC---cCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEec-hhhHHH
Confidence 98874 56665555554443 3679999999999999888888887765554432 233445556655554 344555
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
.+...+... ..+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 248 ~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip 325 (400)
T 1s2m_A 248 CLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQ 325 (400)
T ss_dssp HHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCT
T ss_pred HHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCcc
Confidence 555533332 567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCHH
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSDE 490 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 490 (502)
++++||+|++| .|+..|+||+||+||.|+.|.|++|+.+ .+...+..+++.++.++++++....
T Consensus 326 ~~~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 389 (400)
T 1s2m_A 326 AVNVVINFDFP--------KTAETYLHRIGRSGRFGHLGLAINLINW-NDRFNLYKIEQELGTEIAAIPATID 389 (400)
T ss_dssp TEEEEEESSCC--------SSHHHHHHHHCBSSCTTCCEEEEEEECG-GGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred CCCEEEEeCCC--------CCHHHHHHhcchhcCCCCCceEEEEecc-chHHHHHHHHHHhCCCccccccccc
Confidence 99999999999 7899999999999999999999999975 5677889999999999999985443
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.2e-56 Score=462.21 Aligned_cols=375 Identities=26% Similarity=0.390 Sum_probs=298.3
Q ss_pred CCCccCCC----CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC----CC
Q 010762 99 ATTFEDLN----LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LK 170 (502)
Q Consensus 99 ~~~f~~~~----l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~----~~ 170 (502)
..+|+++. |++.+++.+.. +||..|+|+|.++|+.++.+.+++++++||||||||++|++|++..+... ..
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 94 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 94 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccC
Confidence 33455543 99999999986 99999999999999999943339999999999999999999999887432 23
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhcc----cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-ccCC
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKH----TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGF 245 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~ 245 (502)
++++|||+||++|+.|+++.+.++... ....+....++..... ........+++|+|+||++|.+++... ...+
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA-AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH-HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH-HHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 568999999999999999999988632 2344444444432211 111111224799999999999988764 3457
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC----CCeeEEEEeecCChhHHHHHHHHhcCCceeeecc----ccc
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS----GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKK----EEL 317 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~----~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~ 317 (502)
..+++|||||||++++. +|...+..++..+.... +.+|+++||||+++.+..++..++..+..+.... ...
T Consensus 174 ~~~~~lViDEah~l~~~-gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp TTCCEEEEETHHHHTST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred ccCCEEEEEChHHhhcC-CCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 88999999999999984 89999998888876533 3679999999999999888888887766655433 222
Q ss_pred ccccceEEEEecCChHHHHHHHHHHHHHh---cccCCcEEEEcCChhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHH
Q 010762 318 SLESVKQYKVYCPDELAKVMVIRDRIFEL---GEKMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDK 391 (502)
Q Consensus 318 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~ 391 (502)
....+.+.+........+...+...+... .....++||||+++..|+.++..|... ++.+..+||+|++.+|..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTS 332 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHH
Confidence 33445555555554333333222222222 235789999999999999999999887 899999999999999999
Q ss_pred HHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHH
Q 010762 392 IVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIM 471 (502)
Q Consensus 392 ~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 471 (502)
+++.|+.|+.+|||||+++++|||+|++++||+|++| .++..|+||+||+||.|+.|.|++|+.+ .+..++
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p--------~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~ 403 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP--------SELANYIHRIGRTARSGKEGSSVLFICK-DELPFV 403 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC--------SSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHH
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCC--------CCHHHhhhhccccccCCCCceEEEEEcc-cHHHHH
Confidence 9999999999999999999999999999999999999 7899999999999999999999999985 577888
Q ss_pred HHHHHHhCCccccc
Q 010762 472 EKIERYFDIKVTEV 485 (502)
Q Consensus 472 ~~i~~~l~~~~~~~ 485 (502)
..+++..+..+...
T Consensus 404 ~~l~~~~~~~~~~~ 417 (579)
T 3sqw_A 404 RELEDAKNIVIAKQ 417 (579)
T ss_dssp HHHHHHHCCCCCEE
T ss_pred HHHHHHhCCCcccc
Confidence 99999888777654
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.7e-58 Score=454.01 Aligned_cols=370 Identities=36% Similarity=0.609 Sum_probs=177.6
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+++++++.+++.+.. +||..|+|+|.++++.++.| +++++++|||+|||++|++|++..+.....++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHT--CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 4679999999999999987 99999999999999999998 99999999999999999999999987776778999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
|+++|+.|+++.+.++....++.+....++......... ..+++|+|+||++|.+.+......+.++++||+||||+
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHH---HHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhh---cCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 999999999999999988888887777766543211100 01478999999999999988777788999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
+.+. +|...+..++..+.. ..|++++|||++..+......++..+..+...........+.+.+..+.....+...
T Consensus 174 ~~~~-~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 174 MLSS-GFKEQIYQIFTLLPP---TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHHT-TCHHHHHHHHHHSCT---TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred hhCC-CcHHHHHHHHHhCCC---CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHH
Confidence 9874 788888887777654 789999999999999888888888887777766666666666666665555445555
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~ 418 (502)
+...+... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|+
T Consensus 250 l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 250 LTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 54433222 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccccccCCH
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVRNSD 489 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 489 (502)
+++||+|++| .|+..|+||+||+||.|++|.|++|+.+ ++...+..++++++..+++++...
T Consensus 328 ~~~Vi~~~~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 328 VSLVINYDLP--------ANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCEEEEeCCC--------CCHHHHHHHcCcccCCCCCceEEEEEch-hHHHHHHHHHHHhCCcccccCcch
Confidence 9999999999 6788999999999999999999999875 467788999999999999887543
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.2e-55 Score=457.84 Aligned_cols=368 Identities=26% Similarity=0.385 Sum_probs=294.4
Q ss_pred CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC----CCCCeEEEecCcHH
Q 010762 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKAPQALCICPTRE 182 (502)
Q Consensus 107 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~----~~~~~~lil~Pt~~ 182 (502)
+++.+++.+.. +||..|+|+|.++|+.++.+.++|++++||||||||++|++|++..+... ..++++|||+||++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 99999999986 99999999999999999954349999999999999999999999887432 23468999999999
Q ss_pred HHHHHHHHHHHhhcc----cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-ccCCCceEEEEEeCch
Q 010762 183 LAIQNLEVLRKMGKH----TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKILVYDEAD 257 (502)
Q Consensus 183 La~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lVlDEah 257 (502)
|+.|+++.++++... ....+....++..... ........+++|+|+||++|.+++... ...+..+++|||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA-AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH-HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH-HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 999999999987542 1233444444432211 111111225799999999999988764 3357889999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcC----CCeeEEEEeecCChhHHHHHHHHhcCCceeeeccc----ccccccceEEEEec
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSS----GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE----ELSLESVKQYKVYC 329 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~----~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 329 (502)
++++. +|...+..++..+.... +.+|+++||||++..+..++..++..+..+..... ......+.+.+...
T Consensus 237 ~l~~~-~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 237 RLLEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHTST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhcc-chHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 99984 89999998888776533 36799999999999998888888877666554322 22334455555555
Q ss_pred CChHHHHHHHHHHHHHh---cccCCcEEEEcCChhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHHcCCCeE
Q 010762 330 PDELAKVMVIRDRIFEL---GEKMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (502)
Q Consensus 330 ~~~~~k~~~l~~~l~~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~~~~~i 403 (502)
.....+.......+... .....++||||+++..|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 54433333333223222 246789999999999999999999886 899999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccc
Q 010762 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (502)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~ 483 (502)
||||+++++|||+|++++||+||+| .++..|+||+||+||.|+.|.|++|+.+ ++..++..+++..+..++
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p--------~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVP--------SELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIA 466 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCC--------SSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCC
T ss_pred EEEcchhhcCCCcccCCEEEEECCC--------CchhhhhhhcCccccCCCCceEEEEEch-hHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999 7899999999999999999999999985 577888999998887776
Q ss_pred ccc
Q 010762 484 EVR 486 (502)
Q Consensus 484 ~~~ 486 (502)
...
T Consensus 467 ~~~ 469 (563)
T 3i5x_A 467 KQE 469 (563)
T ss_dssp EEE
T ss_pred ccc
Confidence 553
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.5e-54 Score=424.52 Aligned_cols=361 Identities=30% Similarity=0.514 Sum_probs=303.0
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+++++++.+++.|.+ +||..|+|+|.++++.++.+. +++++.+|||||||++|++|++..+... .+.++||++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~ 81 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDE-YNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILT 81 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTC-SEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEEC
T ss_pred cCchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCC-CCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEc
Confidence 4579999999999999987 999999999999999999873 6999999999999999999999887543 466899999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
|+++|+.|+++.+.++....++.+....++........ ....++|+|+||++|.+++......+.++++||+||||.
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK---ALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHH---HHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHh---hcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 99999999999999998877777766665543221100 011478999999999999988877889999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
+.+. +|...+..++..+.. ..+++++|||++......+..++..+..+.... ...+.+.+..+. ...+...
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~ 229 (367)
T 1hv8_A 159 MLNM-GFIKDVEKILNACNK---DKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVN-ENERFEA 229 (367)
T ss_dssp HHTT-TTHHHHHHHHHTSCS---SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECC-GGGHHHH
T ss_pred hhhh-chHHHHHHHHHhCCC---CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeC-hHHHHHH
Confidence 9874 787777776665543 779999999999998888888877655443322 224445555443 3445555
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~ 418 (502)
+...+ .....++||||++++.+..+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 230 l~~~l---~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~ 306 (367)
T 1hv8_A 230 LCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVND 306 (367)
T ss_dssp HHHHH---CSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSC
T ss_pred HHHHH---hcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCccc
Confidence 54433 246789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
+++||++++| .|+..|+||+||+||.|++|.+++++.+ .+...+..+++.++.+++++.
T Consensus 307 ~~~Vi~~~~~--------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 307 LNCVINYHLP--------QNPESYMHRIGRTGRAGKKGKAISIINR-REYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp CSEEEESSCC--------SCHHHHHHHSTTTCCSSSCCEEEEEECT-TSHHHHHHHHHHHTCCCCCBC
T ss_pred CCEEEEecCC--------CCHHHhhhcccccccCCCccEEEEEEcH-HHHHHHHHHHHHhCCCCceec
Confidence 9999999999 7899999999999999999999999975 577888999999999998763
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.4e-56 Score=450.55 Aligned_cols=386 Identities=38% Similarity=0.629 Sum_probs=272.6
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
...|...++++.+++.+.. .||..|+++|.++|+.++.|.++++++++|||||||++|+++++..+.....++++||++
T Consensus 118 l~~~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~ 196 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLA 196 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEEC
T ss_pred ccccccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 3456677889999999986 899999999999999999874589999999999999999999999988777778999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
|+++|+.|+++.+++++...++......++.... .....++|+|+||++|.+++....+.+.++++||+||||+
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCCEEC----------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred CcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 9999999999999999877666554444333221 1122579999999999999988888889999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
+.+..++...+..++..+.. +.|++++|||+++.+..+...++..+..+...........+.+.+..+.....+...
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 347 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPR---NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNV 347 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCT---TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCc---CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHH
Confidence 98756788888877777655 789999999999999999999888887777766666667777777777666667666
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~ 418 (502)
+...+... ..+++||||+++..|..++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|+
T Consensus 348 l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~ 425 (508)
T 3fho_A 348 LVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ 425 (508)
T ss_dssp HHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTT
T ss_pred HHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccC
Confidence 66533322 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc-CCHHHHHHHHH
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDEDFKAALK 497 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~ 497 (502)
+++||++++|+..... .|+..|+||+||+||.|+.|.+++|+.+.++...+..++++++..+++++ .+.+.+++.++
T Consensus 426 v~~VI~~~~p~~~~~~--~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~k~~~ 503 (508)
T 3fho_A 426 VNLVVNYDMPLDQAGR--PDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVK 503 (508)
T ss_dssp CCEEEC----CC-------CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC---------------
T ss_pred CCEEEEECCCCcccCC--CCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHHHHHHHH
Confidence 9999999999543221 46889999999999999999999999988888889999999999999998 45566666655
Q ss_pred H
Q 010762 498 A 498 (502)
Q Consensus 498 ~ 498 (502)
.
T Consensus 504 ~ 504 (508)
T 3fho_A 504 N 504 (508)
T ss_dssp -
T ss_pred H
Confidence 3
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-52 Score=403.85 Aligned_cols=336 Identities=27% Similarity=0.473 Sum_probs=275.5
Q ss_pred CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 107 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
|++.+.+.+.+ +||..|+|+|.++++.++.| +++++.+|||+|||++|++|++.. +.++||++|+++|+.|
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~--~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQG--KNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHH
Confidence 57889999986 99999999999999999998 999999999999999999999864 5689999999999999
Q ss_pred HHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCH
Q 010762 187 NLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFR 266 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~ 266 (502)
+++.+++++...+..+....++....... . ....++|+|+||++|.+++......+.++++||+||||++.+. +|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~-~~~ 147 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQI-N--RVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM-GFI 147 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHH-H--HHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT-TCH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHH-h--hcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc-ccH
Confidence 99999999888777777666654322111 0 0113789999999999998887777889999999999999874 788
Q ss_pred HHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHh
Q 010762 267 DDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL 346 (502)
Q Consensus 267 ~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 346 (502)
..+..++..+.. ..+++++|||++..+...+..++..+..+... .....+.+.+........... ..+.
T Consensus 148 ~~~~~~~~~~~~---~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~-- 216 (337)
T 2z0m_A 148 DDIKIILAQTSN---RKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSKV---QALR-- 216 (337)
T ss_dssp HHHHHHHHHCTT---CSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHHH---HHHH--
T ss_pred HHHHHHHhhCCc---ccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHHH---HHHH--
Confidence 877777766654 67899999999999988888888776655322 233445555555554332221 2122
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEec
Q 010762 347 GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYD 426 (502)
Q Consensus 347 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~ 426 (502)
....+++||||++++.++.+++.|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 2367899999999999999998886 689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCC
Q 010762 427 PPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI 480 (502)
Q Consensus 427 ~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~ 480 (502)
+| .|+..|+||+||+||.|++|.+++|+. .+..+++.+++.++.
T Consensus 293 ~~--------~s~~~~~Q~~GR~gR~g~~g~~~~~~~--~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 293 AP--------QDLRTYIHRIGRTGRMGRKGEAITFIL--NEYWLEKEVKKVSQK 336 (337)
T ss_dssp CC--------SSHHHHHHHHTTBCGGGCCEEEEEEES--SCHHHHHHHC-----
T ss_pred CC--------CCHHHhhHhcCccccCCCCceEEEEEe--CcHHHHHHHHHHhcc
Confidence 99 789999999999999999999999998 566677778777654
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.3e-51 Score=423.57 Aligned_cols=340 Identities=19% Similarity=0.221 Sum_probs=264.8
Q ss_pred ccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 102 FEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 102 f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
+.++++++.+.+.|...+||..|+|+|.++|+.++.| +|+++.+|||+|||++|++|++.. .+++|||+|++
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g--~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~ 94 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAG--KEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLI 94 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTT--CCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcC--CCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHH
Confidence 4568899999999998789999999999999999999 999999999999999999999853 45899999999
Q ss_pred HHHHHHHHHHHHhhcccCceeeEeecCCCCCcccc----cCCCCCCCeEEEeCchHHH------HHHHcCccCCCceEEE
Q 010762 182 ELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI----SKRPPVTAQVVIGTPGTIK------KWMSAKKLGFSRLKIL 251 (502)
Q Consensus 182 ~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ilv~Tp~~l~------~~l~~~~~~~~~~~~l 251 (502)
+|+.|+.+.+..+ ++.+..+.++........ .......++|+|+||++|. +.+.. ...+.++++|
T Consensus 95 ~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~i 169 (591)
T 2v1x_A 95 SLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEE
Confidence 9999999999887 455555554443221100 0012346899999999874 23332 3346789999
Q ss_pred EEeCchhhhcc-cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecC
Q 010762 252 VYDEADHMLDE-AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP 330 (502)
Q Consensus 252 VlDEah~l~~~-~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (502)
||||||++..+ ++|+..+..+ ..+....+..+++++|||+++.+...+..++..+........ ....++...+....
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l-~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~~ 247 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKAL-GILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVRQKP 247 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGG-GHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEEECC
T ss_pred EEECcccccccccccHHHHHHH-HHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEEeCC
Confidence 99999999874 2276665432 222233347899999999999988888877765544333222 12222322222222
Q ss_pred -ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc
Q 010762 331 -DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409 (502)
Q Consensus 331 -~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~ 409 (502)
....+...+...+.. ...++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|+.|+.+|||||++
T Consensus 248 ~~~~~~~~~l~~~l~~-~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a 326 (591)
T 2v1x_A 248 SNTEDFIEDIVKLING-RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA 326 (591)
T ss_dssp SSHHHHHHHHHHHHTT-TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred CcHHHHHHHHHHHHHH-hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 223344444443322 225789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 410 ~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
+++|||+|++++||||++| .|++.|+||+||+||.|++|.|++|+.+.
T Consensus 327 ~~~GID~p~V~~VI~~~~p--------~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMS--------KSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp SCTTCCCSCEEEEEESSCC--------SSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred hhcCCCcccccEEEEeCCC--------CCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 9999999999999999999 89999999999999999999999998754
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.9e-51 Score=408.80 Aligned_cols=342 Identities=18% Similarity=0.227 Sum_probs=261.2
Q ss_pred HHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH
Q 010762 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (502)
Q Consensus 110 ~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (502)
.+.+.+.+.+|| .|+|+|.++++.++.| +|++++||||||||++|++|++..+ ..++++||++||++|+.|+++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~--~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQG--KSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTT--CCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHH
Confidence 444555555677 6999999999999998 9999999999999999999988776 356789999999999999999
Q ss_pred HHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc-----
Q 010762 190 VLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE----- 262 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~----- 262 (502)
.++.++. .++.+..++++...... .........++|+|+||++|.+++.. +.+.++++||+||||++..+
T Consensus 83 ~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 83 RLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhh
Confidence 9999887 77777777766543110 01111122379999999999888764 56778999999999977532
Q ss_pred -----cCCHHH-HHHHHHHhh------hc--CCCeeEEEEeec-CChhHHHH-HHHHhcCCceeeecccccccccceEEE
Q 010762 263 -----AGFRDD-SLRIMKDIE------RS--SGHCQVLLFSAT-FNETVKNF-VTRIVKDYNQLFVKKEELSLESVKQYK 326 (502)
Q Consensus 263 -----~~~~~~-~~~i~~~l~------~~--~~~~q~v~~SAT-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (502)
.+|... +..++..++ .. ....|++++||| +|..+... ...++. +...........+.+.+
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhee
Confidence 578777 677777765 01 137899999999 56554422 223322 22233344455566666
Q ss_pred EecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHHcCCCeEEE
Q 010762 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT-TIMGATIQEERDKIVKEFKDGLTQVLI 405 (502)
Q Consensus 327 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~f~~~~~~iLv 405 (502)
.... +...+...+.. .++++||||+++..|+.++..|...|+.+. .+||. +|. ++.|++|+.+|||
T Consensus 236 ~~~~----~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLv 302 (414)
T 3oiy_A 236 ISSR----SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILI 302 (414)
T ss_dssp ESSC----CHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEE
T ss_pred eccC----HHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEE
Confidence 6553 23333443333 348999999999999999999999999998 99995 344 9999999999999
Q ss_pred E----cCccccCCCCCC-CCEEEEecCCCCCCCCCCCCccchhhhhcccccCC----CcceEEEEeeCCccHHHHHHHHH
Q 010762 406 S----TDVLARGFDQQQ-VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG----RKGVVFNLLMDGDDMIIMEKIER 476 (502)
Q Consensus 406 ~----T~~~~~Gldi~~-v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g----~~g~~~~~~~~~~~~~~~~~i~~ 476 (502)
| |+++++|+|+|+ +++||+||+|.. .|+..|+||+||+||.| +.|.+++|+ ++...+..+++
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~ 373 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSG------PDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKT 373 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTT------TCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHH
T ss_pred EecCcCchhhccCccccccCEEEEECCCCC------CCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHH
Confidence 9 999999999999 999999999921 26889999999999987 589999998 46667788888
Q ss_pred HhC--Ccccccc
Q 010762 477 YFD--IKVTEVR 486 (502)
Q Consensus 477 ~l~--~~~~~~~ 486 (502)
.++ .+++..+
T Consensus 374 ~~~~~~~~~~~~ 385 (414)
T 3oiy_A 374 RLLLIAEEEIIE 385 (414)
T ss_dssp HHHHHHCCCEEE
T ss_pred Hhcccccccccc
Confidence 888 5554443
No 18
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-51 Score=445.79 Aligned_cols=347 Identities=13% Similarity=0.162 Sum_probs=265.6
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
...|..+++++.+...+.. .++..|+|+|.++|+.++.| ++++++||||||||++|++|++..+. .+.++||++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~-~~~f~ltp~Q~~AI~~i~~g--~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~ 234 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEAR-TYPFTLDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTS 234 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSS-CCSSCCCHHHHHHHHHHTTT--CCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred CCCcccCCCChhhhHHHHH-hCCCCCCHHHHHHHHHHHcC--CCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEc
Confidence 3467778888777777755 55666999999999999998 99999999999999999999998873 466899999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
||++|+.|+++.+..++.. +..+.++.. ....++|+|+||++|.+++......+.++++|||||||+
T Consensus 235 PtraLa~Q~~~~l~~~~~~----VglltGd~~---------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFGD----VGLMTGDIT---------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 301 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTSS----EEEECSSCB---------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG
T ss_pred CcHHHHHHHHHHHHHHhCC----ccEEeCccc---------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh
Confidence 9999999999999998763 333444332 223579999999999999988877788999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChh--HHHHHHHHhcCCceeeecccccccccceEEEEecCC-----
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNET--VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD----- 331 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 331 (502)
+.+. +|...+..++..++. .+|+++||||++.. +..++......+..+..... ....+.+++.....
T Consensus 302 l~d~-~rg~~~e~ii~~l~~---~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~ 375 (1108)
T 3l9o_A 302 MRDK-ERGVVWEETIILLPD---KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYL 375 (1108)
T ss_dssp TTSH-HHHHHHHHHHHHSCT---TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC--CSSCEEEEEEETTSSCCEE
T ss_pred cccc-chHHHHHHHHHhcCC---CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEeecCCcceee
Confidence 9874 677778888777754 78999999999864 44566655555444333221 11122222211100
Q ss_pred ----h---------------------------------------------HHHHHHHHHHHHHhcccCCcEEEEcCChhh
Q 010762 332 ----E---------------------------------------------LAKVMVIRDRIFELGEKMGQTIIFVRTKNS 362 (502)
Q Consensus 332 ----~---------------------------------------------~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~ 362 (502)
. ..++..+...+.. ...+++||||+++..
T Consensus 376 ~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~ 453 (1108)
T 3l9o_A 376 VVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRD 453 (1108)
T ss_dssp EEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHH
T ss_pred eeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHH
Confidence 0 1122222222222 245799999999999
Q ss_pred HHHHHHHHHhCCCc---------------------------------------EEEecCCCCHHHHHHHHHHHHcCCCeE
Q 010762 363 ASALHKALKDFGYE---------------------------------------VTTIMGATIQEERDKIVKEFKDGLTQV 403 (502)
Q Consensus 363 ~~~l~~~L~~~~~~---------------------------------------~~~l~~~~~~~~r~~~~~~f~~~~~~i 403 (502)
|+.++..|...++. +..+||+|++.+|..+++.|++|.++|
T Consensus 454 ~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikV 533 (1108)
T 3l9o_A 454 CEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 533 (1108)
T ss_dssp HHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeE
Confidence 99999988653322 799999999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC--CcceEEEEeeCCccHHHHH
Q 010762 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDGDDMIIME 472 (502)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 472 (502)
||||+++++|||+|++++||+++.|++.....+.|+.+|+||+||+||.| ..|.|++++.+..+...+.
T Consensus 534 LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~ 604 (1108)
T 3l9o_A 534 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAK 604 (1108)
T ss_dssp EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHH
T ss_pred EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHH
Confidence 99999999999999999999999887776655668899999999999999 6899999988765544433
No 19
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9e-51 Score=413.53 Aligned_cols=338 Identities=16% Similarity=0.226 Sum_probs=261.3
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
.+|+++++++.+.+.|.+.+||..|+|+|.++|+.++.| +|+++.+|||+|||++|++|++.. .+.+|||+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSG--RDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcC--CCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECC
Confidence 479999999999999987799999999999999999999 999999999999999999999854 357999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+++|+.|+.+.+..+ ++.+..+.++....... ........++|+|+||++|........+...++++||+||||
T Consensus 74 ~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 74 LISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred hHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 999999999999876 44554544443221110 111122347899999999853222222345789999999999
Q ss_pred hhhcc-cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcC-CceeeecccccccccceEEEEecCChHHH
Q 010762 258 HMLDE-AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKD-YNQLFVKKEELSLESVKQYKVYCPDELAK 335 (502)
Q Consensus 258 ~l~~~-~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 335 (502)
++.++ ..|+..+..+.. +....++.+++++|||++..+...+...+.. ...+.... ....++....... ..+
T Consensus 150 ~i~~~g~~fr~~~~~l~~-l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r~~l~~~v~~~---~~~ 223 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQ-LRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS--FDRPNIRYMLMEK---FKP 223 (523)
T ss_dssp GGCTTSSCCCHHHHGGGG-HHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC--CCCTTEEEEEEEC---SSH
T ss_pred ccCcCCCccHHHHHHHHH-HHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC--CCCCceEEEEEeC---CCH
Confidence 99874 237776654432 2233346889999999998876655554432 22222211 1122222222222 233
Q ss_pred HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCC
Q 010762 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 415 (502)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gld 415 (502)
...+...+... .++++||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 224 ~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD 301 (523)
T 1oyw_A 224 LDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGIN 301 (523)
T ss_dssp HHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTC
T ss_pred HHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCC
Confidence 44455444332 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 416 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 416 i~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
+|++++||||++| .|++.|+||+||+||.|.+|.|++|+.+.
T Consensus 302 ~p~v~~VI~~~~p--------~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 302 KPNVRFVVHFDIP--------RNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp CTTCCEEEESSCC--------SSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred ccCccEEEEECCC--------CCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 9999999999999 79999999999999999999999998754
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-46 Score=399.43 Aligned_cols=362 Identities=17% Similarity=0.206 Sum_probs=263.3
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhh-hcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
..+|+++++++.+.+.+.. +||..|+|+|.++++. +..+ ++++++||||||||++|.++++..+.. .+.+++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~il~i 81 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLK--NGGKAIYV 81 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHH--SCSEEEEE
T ss_pred cCcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHH--CCCeEEEE
Confidence 4579999999999999986 9999999999999999 6666 999999999999999999999987642 25699999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+|+++|+.|+++.++.+. ..++.+....|+....... ...++|+|+||++|..++......+.++++||+||+|
T Consensus 82 ~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~-----~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW-----LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp CSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG-----GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred eCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh-----cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 999999999999996443 4467776666654333211 1268999999999999998876668999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccc---------eEEEEe
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESV---------KQYKVY 328 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 328 (502)
++.+ .++...+..++..++ +.|++++|||+++. ..+ ..++..+ .+.......+.... .....+
T Consensus 156 ~l~~-~~~~~~l~~i~~~~~----~~~ii~lSATl~n~-~~~-~~~l~~~-~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 227 (715)
T 2va8_A 156 YLND-PERGPVVESVTIRAK----RRNLLALSATISNY-KQI-AKWLGAE-PVATNWRPVPLIEGVIYPERKKKEYNVIF 227 (715)
T ss_dssp GGGC-TTTHHHHHHHHHHHH----TSEEEEEESCCTTH-HHH-HHHHTCE-EEECCCCSSCEEEEEEEECSSTTEEEEEE
T ss_pred hcCC-cccchHHHHHHHhcc----cCcEEEEcCCCCCH-HHH-HHHhCCC-ccCCCCCCCCceEEEEecCCcccceeeec
Confidence 9876 367777777776665 57999999999752 333 3333321 11111111110000 000111
Q ss_pred cC-------ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCC---------------------------
Q 010762 329 CP-------DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG--------------------------- 374 (502)
Q Consensus 329 ~~-------~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--------------------------- 374 (502)
.. ........ +......++++||||++++.++.++..|....
T Consensus 228 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (715)
T 2va8_A 228 KDNTTKKVHGDDAIIAY----TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDE 303 (715)
T ss_dssp TTSCEEEEESSSHHHHH----HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHH
T ss_pred CcchhhhcccchHHHHH----HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccc
Confidence 11 01122222 33334477999999999999999999998642
Q ss_pred ---------CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE----ecCCCCCCCCCCCCccc
Q 010762 375 ---------YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEV 441 (502)
Q Consensus 375 ---------~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~----~~~p~~~~~~~~~s~~~ 441 (502)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||..... ...+.|..+
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~-~~~~~s~~~ 382 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAG-YYDEIPIME 382 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC---------------CHHH
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCC-CCCcCCHHH
Confidence 24899999999999999999999999999999999999999999999999 8821000 011278999
Q ss_pred hhhhhcccccCC--CcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 442 YLHRIGRAGRFG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 442 y~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
|.||+||+||.| ..|.|++++.+.++ ....+++++....+.+.
T Consensus 383 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~~--~~~~~~~~l~~~~e~~~ 427 (715)
T 2va8_A 383 YKQMSGRAGRPGFDQIGESIVVVRDKED--VDRVFKKYVLSDVEPIE 427 (715)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEECSCGGG--HHHHHHHTTSSCCCCCC
T ss_pred HHHHhhhcCCCCCCCCceEEEEeCCchH--HHHHHHHHHcCCCCCce
Confidence 999999999988 47999999875543 22334556554444443
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.5e-46 Score=399.18 Aligned_cols=350 Identities=18% Similarity=0.189 Sum_probs=267.5
Q ss_pred CccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhh-hcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
+|+++++++.+.+.+.. +||..|+|+|.++++. ++.+ ++++++||||||||++|.+|++..+.. .+.+++|++|
T Consensus 2 ~f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~~l~i~P 76 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILT--QGGKAVYIVP 76 (720)
T ss_dssp BGGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGT--CEEEEECCGGGCHHHHHHHHHHHHHHH--HCSEEEEECS
T ss_pred cHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCC--CcEEEEcCCccHHHHHHHHHHHHHHHh--CCCEEEEEcC
Confidence 58999999999999987 9999999999999998 7777 999999999999999999999977652 2568999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhh
Q 010762 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (502)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l 259 (502)
+++|+.|+++.++++.. .++.+....|+...... ....++|+|+||++|..++......+.++++||+||+|++
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG-----GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc-----ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999975543 47777777665433221 1236899999999999998886666889999999999999
Q ss_pred hcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEE-----EecCC---
Q 010762 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYK-----VYCPD--- 331 (502)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--- 331 (502)
.+. ++...+..++..+.. +.|++++|||+++. .. +..++... .+..... +..+...+ .....
T Consensus 151 ~~~-~r~~~~~~ll~~l~~---~~~ii~lSATl~n~-~~-~~~~l~~~-~~~~~~r---p~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 151 GSR-DRGATLEVILAHMLG---KAQIIGLSATIGNP-EE-LAEWLNAE-LIVSDWR---PVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp GCT-TTHHHHHHHHHHHBT---TBEEEEEECCCSCH-HH-HHHHTTEE-EEECCCC---SSEEEEEEEETTEEEETTSCE
T ss_pred CCC-cccHHHHHHHHHhhc---CCeEEEEcCCcCCH-HH-HHHHhCCc-ccCCCCC---CCcceEEEEeCCeeeccccch
Confidence 863 677778888888764 78999999999752 33 33343321 1111111 11111111 01111
Q ss_pred --hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC---------------------------------CCc
Q 010762 332 --ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF---------------------------------GYE 376 (502)
Q Consensus 332 --~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------------------------------~~~ 376 (502)
...+...+ ......++++||||++++.++.++..|... ...
T Consensus 221 ~~~~~~~~~~----~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 296 (720)
T 2zj8_A 221 DRFSSWEELV----YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGG 296 (720)
T ss_dssp EECSSTTHHH----HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTT
T ss_pred hhhhHHHHHH----HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcC
Confidence 11122222 222346789999999999999999998753 124
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE----ec----CCCCCCCCCCCCccchhhhhcc
Q 010762 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YD----PPVKHGKHLEPDCEVYLHRIGR 448 (502)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~----~~----~p~~~~~~~~~s~~~y~qr~GR 448 (502)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .| .|..+|.||+||
T Consensus 297 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~--------~s~~~~~Qr~GR 368 (720)
T 2zj8_A 297 VAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMER--------IPIIEVHQMLGR 368 (720)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEE--------CCHHHHHHHHTT
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCcc--------CCHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999999998 76 24 789999999999
Q ss_pred cccCC--CcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 449 AGRFG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 449 ~~R~g--~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
+||.| ..|.|++++.+.+ ....+++++....+++.
T Consensus 369 aGR~g~~~~G~~~~l~~~~~---~~~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 369 AGRPKYDEVGEGIIVSTSDD---PREVMNHYIFGKPEKLF 405 (720)
T ss_dssp BCCTTTCSEEEEEEECSSSC---HHHHHHHHTTSCCCCCC
T ss_pred cCCCCCCCCceEEEEecCcc---HHHHHHHHhcCCCCCcE
Confidence 99988 5799999988654 22345567766665554
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.8e-48 Score=407.92 Aligned_cols=352 Identities=17% Similarity=0.186 Sum_probs=264.1
Q ss_pred CccCCC--CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 101 TFEDLN--LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 101 ~f~~~~--l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
+|++++ +++.+.+.+.+ +||..|+|+|.++++.++.+ ++++++||||||||++|.++++..+.. +.+++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~--~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~ 75 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSG--KNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVV 75 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTC--SCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred chhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCC--CcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEe
Confidence 588888 99999999976 99999999999999999887 999999999999999999999987642 56899999
Q ss_pred CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
|+++|+.|+++.++++. ..++.+....|+...... ....++|+|+||++|..++......+.++++||+||+|+
T Consensus 76 P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE-----HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp SSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS-----CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred CcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh-----hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 99999999999996543 346777666665433221 223689999999999999988666688999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEE-----ecCChH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKV-----YCPDEL 333 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 333 (502)
+.+. ++...+..++..+....++.|++++|||+++ ...+ ..++..+ .+....... .+...+. ......
T Consensus 150 l~~~-~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~-~~~l~~~-~~~~~~r~~---~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDSE-KRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEI-AEWLDAD-YYVSDWRPV---PLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGCT-TTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHH-HHHTTCE-EEECCCCSS---CEEEEEECSSEEEEEETT
T ss_pred cCCC-CcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHH-HHHhCCC-cccCCCCCc---cceEEEeeCCeeeccCcc
Confidence 9873 6777777787777655668899999999985 3333 3344321 111111111 1111110 000000
Q ss_pred -------HHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC------------------------------CCc
Q 010762 334 -------AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF------------------------------GYE 376 (502)
Q Consensus 334 -------~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------~~~ 376 (502)
.....+ ......++++||||++++.++.++..|... +..
T Consensus 223 ~~~~~~~~~~~~~----~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 223 FSTSRRVKFEELV----EECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp EEEEEECCHHHHH----HHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred hhhhhhhhHHHHH----HHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 022222 233346789999999999999999988753 235
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE----ec---CCCCCCCCCCCCccchhhhhccc
Q 010762 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YD---PPVKHGKHLEPDCEVYLHRIGRA 449 (502)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~----~~---~p~~~~~~~~~s~~~y~qr~GR~ 449 (502)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ || .| .|..+|.||+||+
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~--------~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR--------IKVSEYKQMAGRA 370 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEE--------CCHHHHHHHHTTB
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCc--------CCHHHHHHHhhhc
Confidence 888999999999999999999999999999999999999999999999 76 44 7899999999999
Q ss_pred ccCC--CcceEEEEeeCCccHHHHHHHHHHhCCcccccc
Q 010762 450 GRFG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR 486 (502)
Q Consensus 450 ~R~g--~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 486 (502)
||.| ..|.|++++.+.+ ....+++++....+.+.
T Consensus 371 GR~g~~~~G~~~~l~~~~~---~~~~~~~~l~~~~e~~~ 406 (702)
T 2p6r_A 371 GRPGMDERGEAIIIVGKRD---REIAVKRYIFGEPERIT 406 (702)
T ss_dssp SCTTTCSCEEEEEECCGGG---HHHHHHTTTSSCCCCCC
T ss_pred CCCCCCCCceEEEEecCcc---HHHHHHHHhcCCCCCce
Confidence 9988 4799999987543 22333445544444443
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.5e-47 Score=415.45 Aligned_cols=353 Identities=18% Similarity=0.211 Sum_probs=263.4
Q ss_pred HHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH
Q 010762 113 KGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (502)
Q Consensus 113 ~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (502)
+.+...+|| .|||+|.++||.++.| +|++++||||||||++|+++++..+ ..++++|||+||++||.|+++.++
T Consensus 69 ~~~~~~~gf-~pt~iQ~~ai~~il~g--~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 69 SFFKKKFGK-DLTGYQRLWAKRIVQG--KSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp HHHHHHSSS-CCCHHHHHHHHHHTTT--CCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHcC--CCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHH
Confidence 344445788 5999999999999998 9999999999999999999988776 356789999999999999999999
Q ss_pred HhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhc---------
Q 010762 193 KMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD--------- 261 (502)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~--------- 261 (502)
.++ ..++.+..++++.+.... .........++|+|+||++|.+++.. +.+.++++||+||||++..
T Consensus 143 ~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 143 KLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp TTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred Hhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhh
Confidence 977 667888888877654211 11111222489999999999888774 5678899999999976553
Q ss_pred -ccCCHHH-HHHHHHHhh------hc--CCCeeEEEEeec-CChhHHHH-HHHHhcCCceeeecccccccccceEEEEec
Q 010762 262 -EAGFRDD-SLRIMKDIE------RS--SGHCQVLLFSAT-FNETVKNF-VTRIVKDYNQLFVKKEELSLESVKQYKVYC 329 (502)
Q Consensus 262 -~~~~~~~-~~~i~~~l~------~~--~~~~q~v~~SAT-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (502)
..||... +..+++.++ .. ....|+++|||| .|..+... ....+ .+.+.........+.+.+..+
T Consensus 220 ~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l----~i~v~~~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 220 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL----NFTVGRLVSVARNITHVRISS 295 (1104)
T ss_dssp HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT----CCCCCBCCCCCCCEEEEEESC
T ss_pred HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce----eEEeccCCCCcCCceeEEEec
Confidence 1478777 778887776 11 137899999999 56554432 22222 233444455566777777766
Q ss_pred CChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHHcCCCeEEEE--
Q 010762 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT-TIMGATIQEERDKIVKEFKDGLTQVLIS-- 406 (502)
Q Consensus 330 ~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~f~~~~~~iLv~-- 406 (502)
. +...+...+.. .++++||||+++..|+.++..|...|+.+. .+||. |.+ ++.|++|+.+||||
T Consensus 296 ~----k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVata 362 (1104)
T 4ddu_A 296 R----SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQ 362 (1104)
T ss_dssp C----CHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEET
T ss_pred C----HHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEec
Confidence 3 33333443333 348999999999999999999999999998 99992 555 99999999999999
Q ss_pred --cCccccCCCCCC-CCEEEEecCCCCC----------------------------------------------------
Q 010762 407 --TDVLARGFDQQQ-VNLIVNYDPPVKH---------------------------------------------------- 431 (502)
Q Consensus 407 --T~~~~~Gldi~~-v~~VI~~~~p~~~---------------------------------------------------- 431 (502)
|+++++|||+|+ |++|||||+|...
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~ 442 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVK 442 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 999999999999 9999999999500
Q ss_pred ----------CC--CCCCCccchhhhhcccccCCC----cceEEEEeeCCccHHHHHHHHHHhC----Ccccccc-CCHH
Q 010762 432 ----------GK--HLEPDCEVYLHRIGRAGRFGR----KGVVFNLLMDGDDMIIMEKIERYFD----IKVTEVR-NSDE 490 (502)
Q Consensus 432 ----------~~--~~~~s~~~y~qr~GR~~R~g~----~g~~~~~~~~~~~~~~~~~i~~~l~----~~~~~~~-~~~~ 490 (502)
.. .+.+++.+|+||+|||||.|. .|.+++++ +|...+..+++.+. .++.++. .+++
T Consensus 443 ~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 519 (1104)
T 4ddu_A 443 EMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLLLIAEEEIIEEAEANWK 519 (1104)
T ss_dssp HHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHHHHTCCCEEEGGGCCHH
T ss_pred hccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHhhhcccccccccccCHH
Confidence 00 001267899999999999653 46667666 46677788887774 4444443 3444
Q ss_pred HHHH
Q 010762 491 DFKA 494 (502)
Q Consensus 491 ~~~~ 494 (502)
++.+
T Consensus 520 ~~~~ 523 (1104)
T 4ddu_A 520 ELVH 523 (1104)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=7.7e-48 Score=394.99 Aligned_cols=328 Identities=17% Similarity=0.194 Sum_probs=249.4
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
.+|| .|||+|..++|.++.| + |+.++||+|||++|++|++.... .+..++||+||++||.|.++++..+...
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G--~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDG--N--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTT--S--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCC--C--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4899 8999999999999998 6 99999999999999999984322 3568999999999999999999999999
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcC------ccCCCceEEEEEeCchhhhcccC------
Q 010762 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDEAG------ 264 (502)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~lVlDEah~l~~~~~------ 264 (502)
+++++.+++++.+.... ....+|+|+|+||++| .+++..+ .+.+..+.++||||||+|+.+.+
T Consensus 151 lgl~v~~i~gg~~~~~r----~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEK----REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp TTCCEEECCTTSCHHHH----HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred cCCeEEEEeCCCCHHHH----HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 99999998887643221 1223589999999999 6666543 35678999999999999983233
Q ss_pred ---------CHHHHHHHHHHhhhc------CCCeeEE-----------------EEeecCCh---hHHHHHH--HHhc-C
Q 010762 265 ---------FRDDSLRIMKDIERS------SGHCQVL-----------------LFSATFNE---TVKNFVT--RIVK-D 306 (502)
Q Consensus 265 ---------~~~~~~~i~~~l~~~------~~~~q~v-----------------~~SAT~~~---~~~~~~~--~~~~-~ 306 (502)
|...+..++..++.. ...+|++ +||||++. .+...+. .++. +
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 456677777766420 1356777 89999874 3322221 1221 1
Q ss_pred Ccee------------------------------------eecccccccccce---------------------------
Q 010762 307 YNQL------------------------------------FVKKEELSLESVK--------------------------- 323 (502)
Q Consensus 307 ~~~~------------------------------------~~~~~~~~~~~~~--------------------------- 323 (502)
...+ .+.....+...+.
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 1111 0000000100010
Q ss_pred -------------------EEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCC
Q 010762 324 -------------------QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGAT 384 (502)
Q Consensus 324 -------------------~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~ 384 (502)
+..........|...+...+......+.++||||+|++.++.|+..|...|+.+..|||++
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 0001222456677777776665444678999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC--------CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc
Q 010762 385 IQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ--------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456 (502)
Q Consensus 385 ~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~--------~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g 456 (502)
.+.+|..+...|+.| .|+||||+++||+||+ ++.+||+|+.| .|...|+||+|||||.|.+|
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p--------~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH--------ESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC--------SSHHHHHHHHTTSSGGGCCE
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC--------CCHHHHHhhcCccccCCCCC
Confidence 888887666666655 6999999999999999 78899999999 89999999999999999999
Q ss_pred eEEEEeeCCcc
Q 010762 457 VVFNLLMDGDD 467 (502)
Q Consensus 457 ~~~~~~~~~~~ 467 (502)
.+++|++..++
T Consensus 537 ~s~~~vs~eD~ 547 (844)
T 1tf5_A 537 ITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEETTSS
T ss_pred eEEEEecHHHH
Confidence 99999997765
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.3e-47 Score=404.58 Aligned_cols=367 Identities=18% Similarity=0.208 Sum_probs=228.3
Q ss_pred HHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC--CCCeEEEecCcHHHHHHHHHHH
Q 010762 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 114 ~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~ 191 (502)
.+.. +||..|+|+|.++++.++.| +|+++++|||+|||++|++|++..+.... .++++|||+||++|+.|+.+.+
T Consensus 5 ~l~~-~g~~~lr~~Q~~~i~~~l~g--~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 5 DTNL-YSPFKPRNYQLELALPAMKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp --CT-TC--CCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred cccc-cCCCCccHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 4444 89999999999999999998 99999999999999999999998775432 2368999999999999999999
Q ss_pred HHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc-CCCceEEEEEeCchhhhcccCCHHHHH
Q 010762 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSL 270 (502)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~lVlDEah~l~~~~~~~~~~~ 270 (502)
++++...++.+....|+....... .....+++|+|+||++|.+++....+ .+.++++|||||||++.....+...+.
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~--~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPV--EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCH--HHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccH--HHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 999987788887777765433211 11112579999999999999988766 688999999999999986433333332
Q ss_pred HHHHHhh--hcCCCeeEEEEeecCC-------hhHHHHHHHHhc----------------------CCceeeeccccc--
Q 010762 271 RIMKDIE--RSSGHCQVLLFSATFN-------ETVKNFVTRIVK----------------------DYNQLFVKKEEL-- 317 (502)
Q Consensus 271 ~i~~~l~--~~~~~~q~v~~SAT~~-------~~~~~~~~~~~~----------------------~~~~~~~~~~~~-- 317 (502)
..+.... ...+..+++++|||+. ......+...+. .+..........
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 2332211 1134679999999986 222222222111 010000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010762 318 -------------------------------------------------------------------------------- 317 (502)
Q Consensus 318 -------------------------------------------------------------------------------- 317 (502)
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------ccccceEEEE---------------ecCChHHHHHHHHHHHHHhc--ccCC
Q 010762 318 -----------------------------SLESVKQYKV---------------YCPDELAKVMVIRDRIFELG--EKMG 351 (502)
Q Consensus 318 -----------------------------~~~~~~~~~~---------------~~~~~~~k~~~l~~~l~~~~--~~~~ 351 (502)
....+.+.+. .......|...+...+.... ..++
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 0000000000 00012234455555444432 3567
Q ss_pred cEEEEcCChhhHHHHHHHHHhCC----CcEEEe--------cCCCCHHHHHHHHHHHHc-CCCeEEEEcCccccCCCCCC
Q 010762 352 QTIIFVRTKNSASALHKALKDFG----YEVTTI--------MGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQ 418 (502)
Q Consensus 352 ~~lVF~~s~~~~~~l~~~L~~~~----~~~~~l--------~~~~~~~~r~~~~~~f~~-~~~~iLv~T~~~~~Gldi~~ 418 (502)
++||||+++..++.++..|...+ +.+..+ ||+|++.+|..++++|++ |..+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 99999999999999999999988 888888 559999999999999998 99999999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHH----HHHhCCcccccc-CCHHHHH
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI----ERYFDIKVTEVR-NSDEDFK 493 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i----~~~l~~~~~~~~-~~~~~~~ 493 (502)
+++||+||+| .|+..|+||+|| ||. +.|.++.|+.. .+......+ ++.++..+.+++ ...+.+.
T Consensus 480 v~~VI~~d~p--------~s~~~~~Qr~GR-GR~-~~g~~~~l~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 548 (696)
T 2ykg_A 480 CNLVILYEYV--------GNVIKMIQTRGR-GRA-RGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFR 548 (696)
T ss_dssp CSEEEEESCC----------CCCC-----------CCCEEEEEESC-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCEEEEeCCC--------CCHHHHHHhhcc-CcC-CCceEEEEecC-CCHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 9999999999 688899999999 998 78999988864 444333444 667777777776 3555553
Q ss_pred HHH
Q 010762 494 AAL 496 (502)
Q Consensus 494 ~~~ 496 (502)
..+
T Consensus 549 ~~i 551 (696)
T 2ykg_A 549 EKI 551 (696)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.5e-46 Score=389.79 Aligned_cols=361 Identities=17% Similarity=0.200 Sum_probs=231.5
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC--CCCeEEEecCcHHHHHHHHHHHHHhhcccCc
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (502)
.|+|+|.++++.++.| +++++++|||||||++|++|++..+.... .++++|||+||++|+.||++.+.+++...++
T Consensus 4 ~~~~~Q~~~i~~~~~~--~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCC--CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 5999999999999998 99999999999999999999998876543 2678999999999999999999999988888
Q ss_pred eeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc-CCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh-
Q 010762 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER- 278 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~- 278 (502)
.+..+.|+...... ......+++|+|+||++|.+++....+ .+.++++||+||||++.....+...+...+.....
T Consensus 82 ~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 82 NIASISGATSDSVS--VQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CEEEECTTTGGGSC--HHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred EEEEEcCCCcchhh--HHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 88777776643221 111122478999999999999988776 78899999999999998753333333233322211
Q ss_pred -cCCCeeEEEEeecCChh----H---HHHHHHHhcCC--ceeeecccc------cccccceEEEEec-------------
Q 010762 279 -SSGHCQVLLFSATFNET----V---KNFVTRIVKDY--NQLFVKKEE------LSLESVKQYKVYC------------- 329 (502)
Q Consensus 279 -~~~~~q~v~~SAT~~~~----~---~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~------------- 329 (502)
..+.++++++|||++.. + ...+..+.... ..+...... .............
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 12467999999998542 1 11111111110 011110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010762 330 -------------------------------------------------------------------------------- 329 (502)
Q Consensus 330 -------------------------------------------------------------------------------- 329 (502)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred -----------------------------------------------CChHHHHHHHHHHHHHhc--ccCCcEEEEcCCh
Q 010762 330 -----------------------------------------------PDELAKVMVIRDRIFELG--EKMGQTIIFVRTK 360 (502)
Q Consensus 330 -----------------------------------------------~~~~~k~~~l~~~l~~~~--~~~~~~lVF~~s~ 360 (502)
.....|...+...+.... ....++||||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 001223444444343332 2458999999999
Q ss_pred hhHHHHHHHHHhCC----C--------cEEEecCCCCHHHHHHHHHHHHc-CCCeEEEEcCccccCCCCCCCCEEEEecC
Q 010762 361 NSASALHKALKDFG----Y--------EVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNYDP 427 (502)
Q Consensus 361 ~~~~~l~~~L~~~~----~--------~~~~l~~~~~~~~r~~~~~~f~~-~~~~iLv~T~~~~~Gldi~~v~~VI~~~~ 427 (502)
..++.++..|...+ + ....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 99999999998864 3 44455669999999999999999 99999999999999999999999999999
Q ss_pred CCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHH----HHHhCCcccccc-CCHHHHHHHHHH
Q 010762 428 PVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI----ERYFDIKVTEVR-NSDEDFKAALKA 498 (502)
Q Consensus 428 p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i----~~~l~~~~~~~~-~~~~~~~~~~~~ 498 (502)
| .|+..|+||+|| ||. +.|.+++|+.+.+. .....+ ++.+...+.++. -+.+++...+++
T Consensus 480 p--------~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~ 544 (555)
T 3tbk_A 480 V--------GNVIKMIQTRGR-GRA-RDSKCFLLTSSADV-IEKEKANMIKEKIMNESILRLQTWDEMKFGKTVHR 544 (555)
T ss_dssp C--------SSCCCEECSSCC-CTT-TSCEEEEEESCHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred C--------CCHHHHHHhcCc-CcC-CCceEEEEEcCCCH-HHHHHHhhHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 9 578889999999 998 89999999975433 222333 444444454444 244555544443
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.5e-47 Score=394.53 Aligned_cols=333 Identities=16% Similarity=0.200 Sum_probs=194.2
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC--CCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
++...|+|+|.++++.++.| +++++++|||||||++|++|++..+.... .++++|||+|+++|+.||.+.+.+++.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~--~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 3 METKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp -----CCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34557999999999999998 99999999999999999999998875433 267899999999999999999999998
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc-CCCceEEEEEeCchhhhcccCCHHHHHHHHHH
Q 010762 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~ 275 (502)
..++.+..+.++...... ......+++|+|+||++|.+++....+ .+.++++||+||||++.+...+...+..++..
T Consensus 81 ~~~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGTCCEEECCCC-----C--HHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchh--HHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 888888777766533221 111122478999999999999988777 78999999999999998753222222222221
Q ss_pred -hhhcCCCeeEEEEeecCChh----HHHHHH------HHhcCCceeeecccc------cccccceEEEEec---------
Q 010762 276 -IERSSGHCQVLLFSATFNET----VKNFVT------RIVKDYNQLFVKKEE------LSLESVKQYKVYC--------- 329 (502)
Q Consensus 276 -l~~~~~~~q~v~~SAT~~~~----~~~~~~------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--------- 329 (502)
+....+..+++++|||++.. +..+.. ..+.. ..+...... .............
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTC-SEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCC-eEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 11123467999999998531 111111 11110 001100000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010762 330 -------------------------------------------------------------------------------- 329 (502)
Q Consensus 330 -------------------------------------------------------------------------------- 329 (502)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 317 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------CChHHHHHHHHHHHHHhc--ccCCcEEEEc
Q 010762 330 --------------------------------------------------PDELAKVMVIRDRIFELG--EKMGQTIIFV 357 (502)
Q Consensus 330 --------------------------------------------------~~~~~k~~~l~~~l~~~~--~~~~~~lVF~ 357 (502)
.....|...+...+.... ....++||||
T Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~ 397 (556)
T 4a2p_A 318 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 397 (556)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 001224444444443332 4678999999
Q ss_pred CChhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCeEEEEcCccccCCCCCCCCEEEE
Q 010762 358 RTKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVN 424 (502)
Q Consensus 358 ~s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-~~~~iLv~T~~~~~Gldi~~v~~VI~ 424 (502)
+++..+..++..|... |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+
T Consensus 398 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~ 477 (556)
T 4a2p_A 398 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 477 (556)
T ss_dssp SSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEE
T ss_pred ccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE
Confidence 9999999999999875 5556677888999999999999999 99999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 425 YDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 425 ~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
||+| .|+..|+||+|| ||. +.|.+++|+...+
T Consensus 478 ~d~p--------~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 478 YEYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp ETCC--------SCHHHHHHC----------CCEEEEESCHH
T ss_pred eCCC--------CCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 9999 689999999999 999 7999999998654
No 28
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.1e-46 Score=407.31 Aligned_cols=340 Identities=19% Similarity=0.236 Sum_probs=253.5
Q ss_pred HHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHH
Q 010762 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (502)
Q Consensus 111 l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (502)
+.+.+.+.+||. | |+|.++||.++.| +|++++||||||||+ |++|++..+.. .++++|||+||++||.|+++.
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g--~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRK--ESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTT--CCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhC--CCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHH
Confidence 345566668999 9 9999999999998 999999999999998 88888887653 467899999999999999999
Q ss_pred HHHhhcccCc----eeeEeecCCCCCccc-ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCC
Q 010762 191 LRKMGKHTGI----TSECAVPTDSTNYVP-ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGF 265 (502)
Q Consensus 191 ~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~ 265 (502)
+++++...++ .+.+++|+....... ....... ++|+|+||++|.+++.. +.++++||+||||+|++ +
T Consensus 119 l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~---~ 190 (1054)
T 1gku_B 119 IRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK---A 190 (1054)
T ss_dssp HHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT---S
T ss_pred HHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh---c
Confidence 9999988877 777777766554311 1111222 89999999999998765 66899999999999986 4
Q ss_pred HHHHHHHHHHhhh--------cCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH
Q 010762 266 RDDSLRIMKDIER--------SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (502)
Q Consensus 266 ~~~~~~i~~~l~~--------~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 337 (502)
...+..++..+.. .....|++++|||++.. ..+...++..+..+.+.........+.+.+... .+..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~----~k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVND----ESIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESC----CCTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEech----hHHH
Confidence 5667777766631 12357899999999977 544444444444444444444455566655521 2223
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEE----cCccccC
Q 010762 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS----TDVLARG 413 (502)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~----T~~~~~G 413 (502)
.+...+.. .++++||||+++..|+.++..|... +.+..+||++ ..+++.|++|..+|||| |+++++|
T Consensus 266 ~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 266 TLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 33332222 2578999999999999999999988 9999999998 37789999999999999 9999999
Q ss_pred CCCCCC-CEEEEecCCC-----------------------------------------------------CCCC------
Q 010762 414 FDQQQV-NLIVNYDPPV-----------------------------------------------------KHGK------ 433 (502)
Q Consensus 414 ldi~~v-~~VI~~~~p~-----------------------------------------------------~~~~------ 433 (502)
||+|+| ++||+||+|. ....
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999995 9999999991 0000
Q ss_pred ----CCCCCccchhhhhcccccCCCcc--eEEEEeeCCccHHHHHHHHHHhCC
Q 010762 434 ----HLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGDDMIIMEKIERYFDI 480 (502)
Q Consensus 434 ----~~~~s~~~y~qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~~i~~~l~~ 480 (502)
....|..+|+||+||+||.|..| .+++|+... +...+..+++.++.
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~-d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED-DSELLSAFIERAKL 468 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS-CHHHHHHHHHHHHT
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec-CHHHHHHHHHHHhh
Confidence 00037899999999999987765 477777644 66677888888774
No 29
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=8.5e-46 Score=378.70 Aligned_cols=327 Identities=19% Similarity=0.174 Sum_probs=229.8
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
+|. .|+|+|..++|.++.| + ++.++||||||++|++|++.... .+..++|++||++||.|+++++..++..+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G--~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNER--C--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSS--E--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCChHHHhhcccccCC--e--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 675 7999999999999998 6 99999999999999999985442 35689999999999999999999999999
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcC------ccCCCceEEEEEeCchhhhcccC-------
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDEAG------- 264 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~lVlDEah~l~~~~~------- 264 (502)
++++.+++|+..... +....+++|+|+||++| .+++..+ .+.+..+.++|+||||+|+.+.+
T Consensus 143 gl~v~~i~GG~~~~~----r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 143 GLTVGINLPGMPAPA----KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp TCCEEECCTTCCHHH----HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred CCeEEEEeCCCCHHH----HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 999998888765321 12223589999999999 7888754 25678999999999999994333
Q ss_pred --------CHHHHHHHHHHhhhc-----------------CCCeeEE------------------------EEeecCCh-
Q 010762 265 --------FRDDSLRIMKDIERS-----------------SGHCQVL------------------------LFSATFNE- 294 (502)
Q Consensus 265 --------~~~~~~~i~~~l~~~-----------------~~~~q~v------------------------~~SAT~~~- 294 (502)
|...+..++..++.. .+.+|++ ++|||.+.
T Consensus 219 g~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~ 298 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIML 298 (853)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchH
Confidence 456677777777531 0134543 89999764
Q ss_pred --hHHHHH--HHHhc--------C-----------------------------CceeeecccccccccceE---------
Q 010762 295 --TVKNFV--TRIVK--------D-----------------------------YNQLFVKKEELSLESVKQ--------- 324 (502)
Q Consensus 295 --~~~~~~--~~~~~--------~-----------------------------~~~~~~~~~~~~~~~~~~--------- 324 (502)
.+...+ ..++. + +..+.+.....+...+.+
T Consensus 299 ~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~k 378 (853)
T 2fsf_A 299 MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEK 378 (853)
T ss_dssp ----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhh
Confidence 221111 00110 0 011111111112222221
Q ss_pred -------------------------------------EEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHH
Q 010762 325 -------------------------------------YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALH 367 (502)
Q Consensus 325 -------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~ 367 (502)
....+.....|...+...+......+.++||||+|++.++.|+
T Consensus 379 l~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls 458 (853)
T 2fsf_A 379 LAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVS 458 (853)
T ss_dssp EEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHH
T ss_pred hhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 0112234567888887766665556789999999999999999
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCC----------------------------
Q 010762 368 KALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV---------------------------- 419 (502)
Q Consensus 368 ~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v---------------------------- 419 (502)
..|...|+++..|||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 459 ~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (853)
T 2fsf_A 459 NELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVR 536 (853)
T ss_dssp HHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhh
Confidence 99999999999999999888888888888888 699999999999999974
Q ss_pred ---------CEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 420 ---------NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 420 ---------~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
.+||+|+.| .|...|.||+||+||.|.+|.++.|++..++
T Consensus 537 ~~~V~~~GGl~VI~te~p--------es~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 537 HDAVLEAGGLHIIGTERH--------ESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHTTSEEEEESSCC--------SSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhHHHhcCCcEEEEccCC--------CCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 599999999 8999999999999999999999999987664
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.4e-45 Score=393.66 Aligned_cols=334 Identities=16% Similarity=0.181 Sum_probs=201.8
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC--CCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
+|+..|+|+|..+++.++.| +++++++|||||||++|++|++..+.... .++++|||||+++|+.|+++.+++++.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~--~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHHHHhC--CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 68899999999999999998 99999999999999999999998876543 267899999999999999999999998
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc-CCCceEEEEEeCchhhhcccCCHHHHHHHHHH
Q 010762 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~ 275 (502)
..++.+..++|+...... ......+++|+|+||++|.+++....+ .+.++++||+||||++.....+...+..++..
T Consensus 322 ~~~~~v~~~~g~~~~~~~--~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp GGTCCEEEECCC-----C--HHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhh--HHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 888888887776643321 111123579999999999999988776 78899999999999998743222222222222
Q ss_pred -hhhcCCCeeEEEEeecCCh-----------hHHHHHHHH------------------hcCCceeeeccccccccc----
Q 010762 276 -IERSSGHCQVLLFSATFNE-----------TVKNFVTRI------------------VKDYNQLFVKKEELSLES---- 321 (502)
Q Consensus 276 -l~~~~~~~q~v~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---- 321 (502)
+....+.++++++|||+.. .+..+...+ +..+..............
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1112446799999999852 121111111 111110000000000000
Q ss_pred --------------------ceEE-EEe----------------------------------------------------
Q 010762 322 --------------------VKQY-KVY---------------------------------------------------- 328 (502)
Q Consensus 322 --------------------~~~~-~~~---------------------------------------------------- 328 (502)
+... ...
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 000
Q ss_pred ------------------------------------------------cCChHHHHHHHHHHHHHh--cccCCcEEEEcC
Q 010762 329 ------------------------------------------------CPDELAKVMVIRDRIFEL--GEKMGQTIIFVR 358 (502)
Q Consensus 329 ------------------------------------------------~~~~~~k~~~l~~~l~~~--~~~~~~~lVF~~ 358 (502)
......|+..+...+... ...+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 000122333444444332 145689999999
Q ss_pred ChhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCeEEEEcCccccCCCCCCCCEEEEe
Q 010762 359 TKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNY 425 (502)
Q Consensus 359 s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-~~~~iLv~T~~~~~Gldi~~v~~VI~~ 425 (502)
++..+..++..|... |..+..+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999873 5566778999999999999999999 999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 426 ~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
|+| .|+..|+||+|| ||. +.|.+++|++..+
T Consensus 720 d~p--------~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 720 EYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp SCC--------SCHHHHHTC---------CCCEEEEECCHH
T ss_pred CCC--------CCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 999 689999999999 999 8999999997643
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-44 Score=385.97 Aligned_cols=324 Identities=15% Similarity=0.224 Sum_probs=245.2
Q ss_pred hCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 118 ~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
.++|. |+|+|.++++.++.| ++++++||||||||++|.++++..+. .+.++||++|+++|+.|+++.+..++.
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g--~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHT--CEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred hCCCC-CCHHHHHHHHHHHcC--CCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 47887 999999999999998 99999999999999999999998773 457999999999999999999998876
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhh
Q 010762 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277 (502)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~ 277 (502)
.+....|+.... ..++|+|+||++|..++......+.++++|||||||++.+. ++...+..++..++
T Consensus 155 ---~vglltGd~~~~---------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~-~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN---------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETIILLP 221 (1010)
T ss_dssp ---CEEEECSSCEEC---------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT-TTHHHHHHHHHHSC
T ss_pred ---CEEEEeCCCccC---------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhccc-chhHHHHHHHHhcC
Confidence 333344433211 24789999999999999887777899999999999999874 66777777777665
Q ss_pred hcCCCeeEEEEeecCChhH--HHHHHHHhcCCceeeecccccccccceEEEEecC---------Ch--------------
Q 010762 278 RSSGHCQVLLFSATFNETV--KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP---------DE-------------- 332 (502)
Q Consensus 278 ~~~~~~q~v~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-------------- 332 (502)
. .+|++++|||++... ..++......+..+.... .....+.+++.... ..
T Consensus 222 ~---~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~--~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 222 D---KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN--FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp T---TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC--CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred C---CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC--CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 4 789999999998643 244444444343333221 11222333222111 00
Q ss_pred -------------------------------HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc-----
Q 010762 333 -------------------------------LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE----- 376 (502)
Q Consensus 333 -------------------------------~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~----- 376 (502)
...+..+...+.. ....++||||+++..|+.++..|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 374 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 374 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHH
Confidence 0111122222211 13458999999999999999999775442
Q ss_pred ----------------------------------EEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEE
Q 010762 377 ----------------------------------VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI 422 (502)
Q Consensus 377 ----------------------------------~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~V 422 (502)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 375 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 375 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEE
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred EE----ecCCCCCCCCCCCCccchhhhhcccccCCC--cceEEEEeeCCccHHHHH
Q 010762 423 VN----YDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGDDMIIME 472 (502)
Q Consensus 423 I~----~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~ 472 (502)
|+ ||.+. ..|.|+..|+||+||+||.|. .|.|++++.+..+...+.
T Consensus 455 I~~~~kfd~~~----~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~ 506 (1010)
T 2xgj_A 455 FTSVRKWDGQQ----FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAK 506 (1010)
T ss_dssp ESCSEEECSSC----EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHH
T ss_pred EeCCcccCCcC----CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHH
Confidence 99 98821 011689999999999999996 599999998664543333
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.7e-45 Score=372.32 Aligned_cols=331 Identities=18% Similarity=0.204 Sum_probs=253.6
Q ss_pred HHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 115 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 115 l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
....+|+ .|+|+|..++|.++.| + |+.++||+|||++|++|++.... .+..++||+||++||.|.++++..+
T Consensus 104 ~~R~lG~-rP~~VQ~~~ip~Ll~G--~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 104 AWRVLDQ-RPFDVQVMGAAALHLG--N--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHHHHSC-CCCHHHHHHHHHHHTT--E--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHcCC-CCCHHHHHHHHhHhcC--C--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3344798 8999999999999998 6 99999999999999999964332 3457999999999999999999999
Q ss_pred hcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcC------ccCCCceEEEEEeCchhhhcc-----
Q 010762 195 GKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE----- 262 (502)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~lVlDEah~l~~~----- 262 (502)
...+++++.+++++..... +....+|+|+|+||++| .+++..+ .+.+..+.++||||||+|+.+
T Consensus 176 ~~~lGLsv~~i~gg~~~~~----r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDE----RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HHHTTCCEEECCTTCCHHH----HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred HhhcCCeEEEEeCCCCHHH----HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 9999999999888764321 11223589999999999 7777654 356788999999999999842
Q ss_pred ----------cCCHHHHHHHHHHhhhc------CCCeeEE-----------------EEeecCCh---hHHHHHH--HHh
Q 010762 263 ----------AGFRDDSLRIMKDIERS------SGHCQVL-----------------LFSATFNE---TVKNFVT--RIV 304 (502)
Q Consensus 263 ----------~~~~~~~~~i~~~l~~~------~~~~q~v-----------------~~SAT~~~---~~~~~~~--~~~ 304 (502)
.+|...+..++..++.. .+.+|++ ++|||++. .+...+. .++
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~ 331 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELF 331 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHC
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHh
Confidence 24667788888888521 1367888 89999875 3322221 122
Q ss_pred cCC--------ceeeec-----------------------------ccccccccceE-----------------------
Q 010762 305 KDY--------NQLFVK-----------------------------KEELSLESVKQ----------------------- 324 (502)
Q Consensus 305 ~~~--------~~~~~~-----------------------------~~~~~~~~~~~----------------------- 324 (502)
... ..+.+. ....+...+.+
T Consensus 332 ~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~E 411 (922)
T 1nkt_A 332 SRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAE 411 (922)
T ss_dssp CBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHH
Confidence 111 000010 01111111110
Q ss_pred -----------------------EEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEec
Q 010762 325 -----------------------YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIM 381 (502)
Q Consensus 325 -----------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~ 381 (502)
..........|...+...+......+.++||||+|++.++.|+..|...|+++..||
T Consensus 412 f~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLn 491 (922)
T 1nkt_A 412 LHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLN 491 (922)
T ss_dssp HHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEec
Confidence 001223456688777776666555678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCC------------------------------------------
Q 010762 382 GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV------------------------------------------ 419 (502)
Q Consensus 382 ~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v------------------------------------------ 419 (502)
|++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 492 ak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (922)
T 1nkt_A 492 AKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASK 569 (922)
T ss_dssp SSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTH
T ss_pred CChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 999888887777888877 699999999999999975
Q ss_pred ----------CEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 420 ----------NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 420 ----------~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
.+||+++.| .|...|.||+||+||.|.+|.++.|++..++
T Consensus 570 ~~~~V~~~GGlhVI~te~p--------es~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 570 EAKEVIEAGGLYVLGTERH--------ESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHTTSEEEEECSCC--------SSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hhhHHHhcCCcEEEeccCC--------CCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 499999999 8999999999999999999999999987655
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.6e-44 Score=388.08 Aligned_cols=334 Identities=16% Similarity=0.178 Sum_probs=202.4
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCC--CCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~--~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
.|+..|+|+|.++++.++.| +++++++|||||||++|++|++..+..... +.++|||+|+++|+.|++..+++++.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g--~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ----CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 57889999999999999998 999999999999999999999988865432 67899999999999999999999988
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCcc-CCCceEEEEEeCchhhhcccCCHHHHHHHHHH
Q 010762 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~ 275 (502)
..++.+..++|+....... .....+++|+|+||++|.+++....+ .+.++++||+||||++.....+...+..++..
T Consensus 322 ~~~~~v~~~~G~~~~~~~~--~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSV--EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp TTTCCEEEECCC-----CC--HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHH--HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 7788888777766433211 11122579999999999999988766 68899999999999998743333222222222
Q ss_pred -hhhcCCCeeEEEEeecCCh-----------hHHHHHHHH------------------hcCCceeeecccccccc-----
Q 010762 276 -IERSSGHCQVLLFSATFNE-----------TVKNFVTRI------------------VKDYNQLFVKKEELSLE----- 320 (502)
Q Consensus 276 -l~~~~~~~q~v~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~----- 320 (502)
+....+..+++++|||+.. .+..+...+ +..+.............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1112446799999999852 111111111 11111110000000000
Q ss_pred -------------------cceEE-EEe----------------------------------------------------
Q 010762 321 -------------------SVKQY-KVY---------------------------------------------------- 328 (502)
Q Consensus 321 -------------------~~~~~-~~~---------------------------------------------------- 328 (502)
.+... ...
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00000 000
Q ss_pred ------------------------------------------------cCChHHHHHHHHHHHHHhc--ccCCcEEEEcC
Q 010762 329 ------------------------------------------------CPDELAKVMVIRDRIFELG--EKMGQTIIFVR 358 (502)
Q Consensus 329 ------------------------------------------------~~~~~~k~~~l~~~l~~~~--~~~~~~lVF~~ 358 (502)
......|+..+...+.... ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0001223333444443332 35689999999
Q ss_pred ChhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCeEEEEcCccccCCCCCCCCEEEEe
Q 010762 359 TKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNY 425 (502)
Q Consensus 359 s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-~~~~iLv~T~~~~~Gldi~~v~~VI~~ 425 (502)
++..++.++..|... |..+..+||+|++.+|..++++|+. |.++|||||+++++|||+|++++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999986 5556677899999999999999999 999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 426 ~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
|+| .|+..|+||+|| ||. +.|.+++|+...+
T Consensus 720 D~p--------~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 720 EYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp SCC--------SCSHHHHCC---------CCCEEEEESCHH
T ss_pred CCC--------CCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 999 688999999999 998 7899999987543
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=380.53 Aligned_cols=328 Identities=18% Similarity=0.247 Sum_probs=219.9
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC---CCCCeEEEecCcHHHHHHH-HHHHHHhhccc
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTRELAIQN-LEVLRKMGKHT 198 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~---~~~~~~lil~Pt~~La~q~-~~~~~~~~~~~ 198 (502)
.|+|+|..+++.++.| +++++++|||+|||++|++|++..+... ..+.++|||+|+++|+.|| .+.+++++..
T Consensus 7 ~l~~~Q~~~i~~il~g--~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG--KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSS--CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHHHHhC--CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 5999999999999998 9999999999999999999999876432 2336899999999999999 9999998865
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHH------HcCccCCCceEEEEEeCchhhhcccCCHHHHHHH
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM------SAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRI 272 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l------~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i 272 (502)
++.+..+.++...... .......++|+|+||++|.+.+ ....+.+.++++|||||||++.....+...+..+
T Consensus 84 ~~~v~~~~g~~~~~~~--~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKIS--FPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp TSCEEEEC----CCCC--HHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred CceEEEEeCCcchhhH--HHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 3666666665543321 0111135799999999999988 3445678899999999999987644444444433
Q ss_pred HHH-hhhcC---------CCeeEEEEeecCChh-------HHHHHHHHhcCCc--eeeecccc------cccccceEEEE
Q 010762 273 MKD-IERSS---------GHCQVLLFSATFNET-------VKNFVTRIVKDYN--QLFVKKEE------LSLESVKQYKV 327 (502)
Q Consensus 273 ~~~-l~~~~---------~~~q~v~~SAT~~~~-------~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~ 327 (502)
+.. +.... +.++++++|||+... ....+..+..... .+...... ........+..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 322 11111 467999999999862 2221211111000 00000000 00000000000
Q ss_pred ecC-----------------------------------------------------------------------------
Q 010762 328 YCP----------------------------------------------------------------------------- 330 (502)
Q Consensus 328 ~~~----------------------------------------------------------------------------- 330 (502)
...
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred -------------------------------C-------------------------hHHHHHHHHHHHHHhcc--c-CC
Q 010762 331 -------------------------------D-------------------------ELAKVMVIRDRIFELGE--K-MG 351 (502)
Q Consensus 331 -------------------------------~-------------------------~~~k~~~l~~~l~~~~~--~-~~ 351 (502)
. ...|...+...+..... . .+
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 0 00111111122222111 2 78
Q ss_pred cEEEEcCChhhHHHHHHHHHhC------CCcEEEecCC--------CCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 352 QTIIFVRTKNSASALHKALKDF------GYEVTTIMGA--------TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 352 ~~lVF~~s~~~~~~l~~~L~~~------~~~~~~l~~~--------~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
++||||+++..++.++..|... |+.+..+||+ |++.+|..+++.|++|..+|||||+++++|||+|
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip 481 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIK 481 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccc
Confidence 9999999999999999999987 8999999999 9999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCc
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~ 466 (502)
++++||+||+| .|+..|+||+||+||.| .+++++.+.+
T Consensus 482 ~v~~VI~~d~p--------~s~~~~~Qr~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 482 ECNIVIRYGLV--------TNEIAMVQARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp SCCCCEEESCC--------CCHHHHHHHHTTSCSSS---CEEEEEEESS
T ss_pred cCCEEEEeCCC--------CCHHHHHHHcCCCCCCC---ceEEEEEeCC
Confidence 99999999999 68999999999976544 5555555443
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.4e-42 Score=373.34 Aligned_cols=321 Identities=14% Similarity=0.159 Sum_probs=235.7
Q ss_pred hhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 117 ~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
..++|. |+|+|.++|+.++.| ++++++||||||||++|++++...+. .+.++||++|+++|+.|+++.+..+..
T Consensus 34 ~~~~f~-l~~~Q~~aI~~il~g--~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVYHLEQG--DSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCCSSC-CCHHHHHHHHHHHTT--CEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred HhCCCC-CCHHHHHHHHHHHcC--CCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 347776 899999999999999 99999999999999999999887653 456899999999999999999998754
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHh
Q 010762 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276 (502)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l 276 (502)
++.+....++... ...++|+|+||++|.+++......+.++++|||||||++.+. +|...+..++..+
T Consensus 108 --~~~v~~l~G~~~~---------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~-~~g~~~e~ii~~l 175 (997)
T 4a4z_A 108 --DVNIGLITGDVQI---------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQ-DRGVVWEEVIIML 175 (997)
T ss_dssp ---CCEEEECSSCEE---------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTT-CTTCCHHHHHHHS
T ss_pred --CCeEEEEeCCCcc---------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccccc-chHHHHHHHHHhc
Confidence 3455555554321 124789999999999999887777899999999999999874 6777777777776
Q ss_pred hhcCCCeeEEEEeecCChhH--HHHHHHHhcCCceeeecccccccccceEEEEe--------------------------
Q 010762 277 ERSSGHCQVLLFSATFNETV--KNFVTRIVKDYNQLFVKKEELSLESVKQYKVY-------------------------- 328 (502)
Q Consensus 277 ~~~~~~~q~v~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 328 (502)
+. ..|++++|||+++.. ..++.........+.. .......+.+++..
T Consensus 176 ~~---~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~--~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (997)
T 4a4z_A 176 PQ---HVKFILLSATVPNTYEFANWIGRTKQKNIYVIS--TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEIL 250 (997)
T ss_dssp CT---TCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEE--CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHH
T ss_pred cc---CCCEEEEcCCCCChHHHHHHHhcccCCceEEEe--cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHh
Confidence 54 789999999998543 2222222111111111 11111111111100
Q ss_pred ------------------------------------------------------------------cCChHHHHHHHHHH
Q 010762 329 ------------------------------------------------------------------CPDELAKVMVIRDR 342 (502)
Q Consensus 329 ------------------------------------------------------------------~~~~~~k~~~l~~~ 342 (502)
......+...+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (997)
T 4a4z_A 251 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 330 (997)
T ss_dssp C-----------------------------------------------------------------CCCCTTHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 00011122233332
Q ss_pred HHHhcccCCcEEEEcCChhhHHHHHHHHHhCCC---------------------------------------cEEEecCC
Q 010762 343 IFELGEKMGQTIIFVRTKNSASALHKALKDFGY---------------------------------------EVTTIMGA 383 (502)
Q Consensus 343 l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~l~~~ 383 (502)
+.. ....++||||++++.|+.++..|...++ .+..+||+
T Consensus 331 l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 331 LRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp HHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred HHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 322 2457999999999999999999987665 57999999
Q ss_pred CCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCC-CCCCCCCCCccchhhhhcccccCC--CcceEEE
Q 010762 384 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV-KHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFN 460 (502)
Q Consensus 384 ~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~-~~~~~~~~s~~~y~qr~GR~~R~g--~~g~~~~ 460 (502)
|++.+|..+++.|+.|.++|||||+++++|||+|+ ..||+++.|. .+....+.|+..|+||+||+||.| ..|.|++
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999 6666665552 111122348999999999999998 5678887
Q ss_pred Eee
Q 010762 461 LLM 463 (502)
Q Consensus 461 ~~~ 463 (502)
++.
T Consensus 488 l~~ 490 (997)
T 4a4z_A 488 MAY 490 (997)
T ss_dssp ECC
T ss_pred ecC
Confidence 774
No 36
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.8e-43 Score=356.07 Aligned_cols=323 Identities=21% Similarity=0.282 Sum_probs=235.9
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCcee
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (502)
.|+|+|..+++.++.+ ++++++|||+|||++++++++..+. ..+.++|||||+++|+.||.+.+.++.+.....+
T Consensus 9 ~l~~~Q~~~i~~~~~~---~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET---NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS---CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC---CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 5999999999999985 8999999999999999999988765 3466899999999999999999999875434455
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC
Q 010762 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~ 282 (502)
....++....... .....++|+|+||+.|...+....+.+.++++||+||||++.+...+ . .+...+....+.
T Consensus 84 ~~~~g~~~~~~~~---~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~-~---~~~~~~~~~~~~ 156 (494)
T 1wp9_A 84 VALTGEKSPEERS---KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAY-V---FIAREYKRQAKN 156 (494)
T ss_dssp EEECSCSCHHHHH---HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHH-H---HHHHHHHHHCSS
T ss_pred EEeeCCcchhhhh---hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcH-H---HHHHHHHhcCCC
Confidence 5555544322110 01124789999999999999887778899999999999999863222 2 233333333446
Q ss_pred eeEEEEeecCChhHH---HHHHHHhcCCceeeecccccc-----cccceEEEEe--------------------------
Q 010762 283 CQVLLFSATFNETVK---NFVTRIVKDYNQLFVKKEELS-----LESVKQYKVY-------------------------- 328 (502)
Q Consensus 283 ~q~v~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------------------------- 328 (502)
.+++++|||+..... .++..+............... ..........
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999974332 222222111100000000000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010762 329 -------------------------------------------------------------------------------- 328 (502)
Q Consensus 329 -------------------------------------------------------------------------------- 328 (502)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred ---------------------cCChHHHHHHHHHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecC---
Q 010762 329 ---------------------CPDELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG--- 382 (502)
Q Consensus 329 ---------------------~~~~~~k~~~l~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~--- 382 (502)
+.....|...+.+.+.... ..+.++||||+++..+..+++.|...|+.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 0011224444555444433 46889999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcce
Q 010762 383 -----ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457 (502)
Q Consensus 383 -----~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~ 457 (502)
+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+ |.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~--------~~~~~~~Qr~GR~~R~g~-g~ 467 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV--------PSAIRSIQRRGRTGRHMP-GR 467 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCC--------HHHHHHHHHHTTSCSCCC-SE
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCC--------CCHHHHHHHHhhccCCCC-ce
Confidence 9999999999999999999999999999999999999999999999 578899999999999997 99
Q ss_pred EEEEeeCCc
Q 010762 458 VFNLLMDGD 466 (502)
Q Consensus 458 ~~~~~~~~~ 466 (502)
++.|+..+.
T Consensus 468 ~~~l~~~~t 476 (494)
T 1wp9_A 468 VIILMAKGT 476 (494)
T ss_dssp EEEEEETTS
T ss_pred EEEEEecCC
Confidence 999998654
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=4.2e-42 Score=376.84 Aligned_cols=329 Identities=18% Similarity=0.200 Sum_probs=249.3
Q ss_pred CCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcC----CCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc
Q 010762 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (502)
Q Consensus 105 ~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~----~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt 180 (502)
++.++.+.+.+...++|. |||+|.++|+.++. |..++++++++||+|||++|+++++..+. .+.+++|+|||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEech
Confidence 456677777777778987 79999999999987 52249999999999999999999887654 45699999999
Q ss_pred HHHHHHHHHHHHHhhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
++|+.|+++.+.++....++.+..+.+..+..... ......+.++|+|+||+.|. ..+.+.++++||+||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 99999999999988877777776665544332111 11112235899999997653 345688999999999998
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHH
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 338 (502)
+.. ....++..+.. +.++++||||+++.........+.++..+.. .......+..++..... . .
T Consensus 737 ~g~------~~~~~l~~l~~---~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~r~~i~~~~~~~~~-~----~ 800 (1151)
T 2eyq_A 737 FGV------RHKERIKAMRA---NVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPARRLAVKTFVREYDS-M----V 800 (1151)
T ss_dssp SCH------HHHHHHHHHHT---TSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCBCBCEEEEEEECCH-H----H
T ss_pred cCh------HHHHHHHHhcC---CCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCCccccEEEEecCCH-H----H
Confidence 532 23445555544 6799999999887765554444433322221 11112223333333221 1 1
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCC
Q 010762 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416 (502)
Q Consensus 339 l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi 416 (502)
+...+......+++++|||++++.++.+++.|+.. +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 22223334446789999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 417 ~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
|++++||+++.+. .+...|.||+||+||.|+.|.|++++.+.
T Consensus 881 p~v~~VIi~~~~~-------~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 881 PTANTIIIERADH-------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTEEEEEETTTTS-------SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cCCcEEEEeCCCC-------CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999998852 46788999999999999999999888643
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-43 Score=369.07 Aligned_cols=325 Identities=22% Similarity=0.238 Sum_probs=238.8
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhhhhhhcCC----CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH
Q 010762 109 PELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (502)
Q Consensus 109 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~----~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La 184 (502)
..+++.+.+.++| .||++|.++|+.++.+ ..++++++|+||||||++|++|++..+. .+.+++|++||++||
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~---~g~qvlvlaPtr~La 430 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE---AGFQTAFMVPTSILA 430 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH---HTSCEEEECSCHHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHH
Confidence 4566666666999 8999999999999864 1258999999999999999999998874 356899999999999
Q ss_pred HHHHHHHHHhhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcc
Q 010762 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE 262 (502)
Q Consensus 185 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~ 262 (502)
.|+++.+.++....++.+..++++....... ......+.++|+|+||+.|.+ .+.+.++++||+||+|++...
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH
Confidence 9999999999988888887777765433211 111122358999999998754 345889999999999986431
Q ss_pred cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHH
Q 010762 263 AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDR 342 (502)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 342 (502)
.+ ..+......+++++||||+.+..... ..........+.........+....... .+...+...
T Consensus 506 --qr-------~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~~l~~~ 570 (780)
T 1gm5_A 506 --QR-------EALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTMLVPM----DRVNEVYEF 570 (780)
T ss_dssp -----------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECCCCS----STHHHHHHH
T ss_pred --HH-------HHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEEecc----chHHHHHHH
Confidence 11 12222334689999999987654332 2222222222211111111222222211 122333444
Q ss_pred HHHhcccCCcEEEEcCChh--------hHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccc
Q 010762 343 IFELGEKMGQTIIFVRTKN--------SASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (502)
Q Consensus 343 l~~~~~~~~~~lVF~~s~~--------~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 411 (502)
+......+++++|||++.+ .+..+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 5555667889999999764 57788888887 478999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeC
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 464 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~ 464 (502)
+|+|+|++++||+++.|. .+...|.||+||+||.|+.|.|++++.+
T Consensus 651 ~GIDiP~v~~VIi~d~~r-------~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPER-------FGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp SCSCCTTCCEEEBCSCSS-------SCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred ccccCCCCCEEEEeCCCC-------CCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999999999984 2577889999999999999999998873
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4e-42 Score=386.99 Aligned_cols=348 Identities=16% Similarity=0.138 Sum_probs=249.4
Q ss_pred CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 107 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
|.+...+.++. .+|..++|+|.++++.++.++ +|++++||||||||++|.+|++..+... .+.++||++|+++||.|
T Consensus 911 L~~~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~-~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQ-DKFPFFNPIQTQVFNTVYNSD-DNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTT-TTCSBCCHHHHHHHHHHHSCC-SCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHH-hcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHH
Confidence 55677888876 789999999999999998763 7899999999999999999999988643 35589999999999999
Q ss_pred HHHHHHH-hhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc--cCCCceEEEEEeCchhhhccc
Q 010762 187 NLEVLRK-MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLDEA 263 (502)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~lVlDEah~l~~~~ 263 (502)
.++.+.+ ++...++++....|+...... ...+++|+||||+++..++.... ..+.++++||+||+|++.++
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~-----~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK-----LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH-----HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh-----hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-
Confidence 9998875 556677877766655432211 12247999999999987776532 24778999999999988763
Q ss_pred CCHHHHHHHHHHhh----hcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecC--ChHHHHH
Q 010762 264 GFRDDSLRIMKDIE----RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP--DELAKVM 337 (502)
Q Consensus 264 ~~~~~~~~i~~~l~----~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~ 337 (502)
....+..++..+. ....++|+|++|||+++ ..++...+......+..-.....+..+..+..... .......
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 4455555554442 23457899999999985 33444433323222222222223333333332222 1111111
Q ss_pred ----HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----------------------------------CCcEEE
Q 010762 338 ----VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----------------------------------GYEVTT 379 (502)
Q Consensus 338 ----~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------------------~~~~~~ 379 (502)
.+...+ ......+++||||+|+..|+.++..|... ...+..
T Consensus 1140 ~~~~~~~~~i-~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1140 SMAKPVYHAI-TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp TTHHHHHHHH-HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhcchHHHHH-HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 111212 22346789999999999999988766421 235889
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCC--CCCCCCccchhhhhcccccCCC--c
Q 010762 380 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHG--KHLEPDCEVYLHRIGRAGRFGR--K 455 (502)
Q Consensus 380 l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~--~~~~~s~~~y~qr~GR~~R~g~--~ 455 (502)
+||+|++.+|..+.+.|++|.++|||||+.+++|+|+|+..+||.....+.+. ...+.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 99999999999999999999999999999999999999999888422111111 1123678999999999999986 6
Q ss_pred ceEEEEeeCCc
Q 010762 456 GVVFNLLMDGD 466 (502)
Q Consensus 456 g~~~~~~~~~~ 466 (502)
|.|++++.+.+
T Consensus 1299 G~avll~~~~~ 1309 (1724)
T 4f92_B 1299 GRCVIMCQGSK 1309 (1724)
T ss_dssp EEEEEEEEGGG
T ss_pred eEEEEEecchH
Confidence 99998887554
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.7e-43 Score=364.36 Aligned_cols=316 Identities=17% Similarity=0.149 Sum_probs=229.6
Q ss_pred CCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHH
Q 010762 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (502)
Q Consensus 105 ~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La 184 (502)
+++++.+++.+.. ....|+|+|+.++|.++.| +|++++||||||||++|++|++..+.. .+.++||++|||+||
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g--~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTT--CEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHH
Confidence 5677776666642 3588999999999999998 999999999999999999999988754 456899999999999
Q ss_pred HHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccC
Q 010762 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAG 264 (502)
Q Consensus 185 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~ 264 (502)
.|+++.+.. ..+.+ .... .......+..+.++|.+.+...+... ..+.++++|||||||++ + .+
T Consensus 229 ~Qi~~~l~~------~~v~~--~~~~-----l~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~-~~ 292 (618)
T 2whx_A 229 AEMEEALRG------LPIRY--QTPA-----VKSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D-PC 292 (618)
T ss_dssp HHHHHHTTT------SCEEE--CCTT-----SSCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-S-HH
T ss_pred HHHHHHhcC------CceeE--eccc-----ceeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-C-cc
Confidence 999988762 22221 1111 01122234568888999888776654 34889999999999998 3 36
Q ss_pred CHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHH
Q 010762 265 FRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 344 (502)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 344 (502)
|...+..++..+.. +++|+++||||++..+..+.. .++..+.+... .+.. +...+...+.
T Consensus 293 ~~~~~~~i~~~l~~--~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~~--~~~~ll~~l~ 352 (618)
T 2whx_A 293 SVAARGYISTRVEM--GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPER--SWNTGFDWIT 352 (618)
T ss_dssp HHHHHHHHHHHHHH--TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCSS--CCSSSCHHHH
T ss_pred HHHHHHHHHHHhcc--cCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCHH--HHHHHHHHHH
Confidence 66677777766642 368999999999876442211 12221211110 0100 0001111122
Q ss_pred HhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEE--
Q 010762 345 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI-- 422 (502)
Q Consensus 345 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~V-- 422 (502)
. ..+++||||++++.|+.+++.|...++.+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 353 ~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 D---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp H---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred h---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEE
Confidence 2 46799999999999999999999999999999985 688899999999999999999999999997 9998
Q ss_pred ------------------EEecCCCCCCCCCCCCccchhhhhcccccCCC-cceEEEEee--CCccHHHHHHHHHHh
Q 010762 423 ------------------VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR-KGVVFNLLM--DGDDMIIMEKIERYF 478 (502)
Q Consensus 423 ------------------I~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~-~g~~~~~~~--~~~~~~~~~~i~~~l 478 (502)
|+|+.| .|.++|+||+||+||.|. .|.+++|+. +.++...+..+++.+
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P--------~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIP--------VTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEE--------CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred CcceecceecccCCCceEEccccc--------CCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 666667 789999999999999964 899999986 234555666666654
No 41
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.2e-42 Score=362.69 Aligned_cols=341 Identities=18% Similarity=0.233 Sum_probs=244.1
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhcc--CCCCCCCeEE
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQAL 175 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l--~~~~~~~~~l 175 (502)
+..+|.++++++.+.+.+.. .+ ..|+++|+.+|+.++.+ +++++++||||||||+ ++|++... .....+.+++
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~-r~-~lP~~~q~~~i~~~l~~-~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~il 144 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKI-RR-ELPVHAQRDEFLKLYQN-NQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVA 144 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHH-HT-TSGGGGGHHHHHHHHHH-CSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEE
T ss_pred CCCCccccCCCHHHHHHHHH-hh-cCChHHHHHHHHHHHhC-CCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEE
Confidence 35689999999999999976 56 78999999999999876 2789999999999999 45554221 1222356799
Q ss_pred EecCcHHHHHHHHHHHHHhhc-ccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEe
Q 010762 176 CICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (502)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlD 254 (502)
|++|+++|+.|+++.+..... ..+..+..... ........++|+|+|||++.+.+.... .+.++++||||
T Consensus 145 vl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~--------~~~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlD 215 (773)
T 2xau_A 145 CTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR--------FENKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILD 215 (773)
T ss_dssp EEESCHHHHHHHHHHHHHHTTCCBTTTEEEEET--------TEEECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEEC
T ss_pred ecCchHHHHHHHHHHHHHHhCCchhheecceec--------cccccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEec
Confidence 999999999999987655432 22222211111 111122357899999999998887653 48899999999
Q ss_pred Cchh-hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChH
Q 010762 255 EADH-MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 333 (502)
Q Consensus 255 Eah~-l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (502)
|+|. .++. +.+..++..+....+..|+++||||++.. .+..++.....+.+.... ..+.+++.......
T Consensus 216 Eah~R~ld~----d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~ 285 (773)
T 2xau_A 216 EAHERTLAT----DILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQRD 285 (773)
T ss_dssp SGGGCCHHH----HHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCSC
T ss_pred Cccccccch----HHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCchh
Confidence 9995 4542 22333444444444578999999999643 234555544444333222 23444444443322
Q ss_pred HHHHHHHHHHHHh--cccCCcEEEEcCChhhHHHHHHHHHh-----------CCCcEEEecCCCCHHHHHHHHHHHH---
Q 010762 334 AKVMVIRDRIFEL--GEKMGQTIIFVRTKNSASALHKALKD-----------FGYEVTTIMGATIQEERDKIVKEFK--- 397 (502)
Q Consensus 334 ~k~~~l~~~l~~~--~~~~~~~lVF~~s~~~~~~l~~~L~~-----------~~~~~~~l~~~~~~~~r~~~~~~f~--- 397 (502)
. .......+... ....+++||||+++.+++.++..|.. .++.+..+||+|++.+|..+++.|+
T Consensus 286 ~-~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 286 Y-LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp H-HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred H-HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 2 22222222222 12578999999999999999999975 5788999999999999999999999
Q ss_pred --cCCCeEEEEcCccccCCCCCCCCEEEEecCCC-------CCCCCC---CCCccchhhhhcccccCCCcceEEEEeeC
Q 010762 398 --DGLTQVLISTDVLARGFDQQQVNLIVNYDPPV-------KHGKHL---EPDCEVYLHRIGRAGRFGRKGVVFNLLMD 464 (502)
Q Consensus 398 --~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~-------~~~~~~---~~s~~~y~qr~GR~~R~g~~g~~~~~~~~ 464 (502)
+|..+|||||+++++|||+|++++||+++++. .+...+ |.|..+|+||+||+||. ++|.|++|+++
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~ 442 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 442 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecH
Confidence 99999999999999999999999999987711 000000 27899999999999999 79999999974
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.1e-42 Score=348.41 Aligned_cols=288 Identities=17% Similarity=0.179 Sum_probs=210.4
Q ss_pred CCCCCcHHHHhhhhhhcCCCCccE-EEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 120 KFQKPSKIQAISLPMILTPPYRNL-IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 120 g~~~p~~~Q~~~i~~il~~~~~~~-lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
|+.+|+|+|+ +||.++.+ +++ +++||||||||++|++|++..+.. .+.++||++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~--~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g----- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRK--KRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALRG----- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGST--TCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT-----
T ss_pred CCCCCCCcHH-HHHHHHhc--CCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhcC-----
Confidence 6889999986 79999998 555 999999999999999999876543 457899999999999999998752
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
..+....... ......+..|.++|++.+.+.+... ..+.++++||+||||++ + ..+... ..++... .
T Consensus 71 -~~v~~~~~~~-------~~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~-~~~~~~-~~~~~~~-~ 137 (451)
T 2jlq_A 71 -LPIRYQTPAV-------KSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D-PCSVAA-RGYISTR-V 137 (451)
T ss_dssp -SCEEECCTTC-------SCCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-S-HHHHHH-HHHHHHH-H
T ss_pred -ceeeeeeccc-------cccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-C-cchHHH-HHHHHHh-h
Confidence 2221111111 0122334679999999998888765 45889999999999987 2 122222 2222211 1
Q ss_pred cCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcC
Q 010762 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVR 358 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~ 358 (502)
..+++|+++||||++.....+ +...+..+.... ..+. ..+ . .. ...+.. ..+++||||+
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~---~~~----~---~~----~~~l~~---~~~~~lVF~~ 196 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER-EIPE---RSW----N---TG----FDWITD---YQGKTVWFVP 196 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CCCS---SCC----S---SS----CHHHHH---CCSCEEEECS
T ss_pred cCCCceEEEEccCCCccchhh---hcCCCceEecCc-cCCc---hhh----H---HH----HHHHHh---CCCCEEEEcC
Confidence 234689999999998754322 112222222110 0000 000 0 01 111222 4679999999
Q ss_pred ChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEec------------
Q 010762 359 TKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYD------------ 426 (502)
Q Consensus 359 s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~------------ 426 (502)
+++.|+.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 197 s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~ 271 (451)
T 2jlq_A 197 SIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGP 271 (451)
T ss_dssp SHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSS
T ss_pred CHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccc
Confidence 999999999999999999999999864 57899999999999999999999999999 9999998
Q ss_pred --------CCCCCCCCCCCCccchhhhhcccccCCC-cceEEEEeeC
Q 010762 427 --------PPVKHGKHLEPDCEVYLHRIGRAGRFGR-KGVVFNLLMD 464 (502)
Q Consensus 427 --------~p~~~~~~~~~s~~~y~qr~GR~~R~g~-~g~~~~~~~~ 464 (502)
.| .|..+|+||+||+||.|. .|.+++|+..
T Consensus 272 ~~l~~~~~~p--------~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 272 ERVILAGPIP--------VTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CEEEEEEEEE--------CCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ceeeeccccc--------CCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 67 789999999999999998 8888877643
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.5e-41 Score=379.36 Aligned_cols=340 Identities=20% Similarity=0.263 Sum_probs=244.4
Q ss_pred CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC--------CCCCeEEEecCcHHHHHHHHHHH
Q 010762 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--------LKAPQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 120 g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~--------~~~~~~lil~Pt~~La~q~~~~~ 191 (502)
||+.++++|++++|.++..+ +|++++||||||||++|.++++..+... ..+.++|+++|+++||.|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al~~~-~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETD-ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCC-CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 89999999999999998753 8999999999999999999999887431 24668999999999999999999
Q ss_pred HHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc--cCCCceEEEEEeCchhhhcccCCHHHH
Q 010762 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLDEAGFRDDS 269 (502)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~lVlDEah~l~~~~~~~~~~ 269 (502)
.+.....++++...+|+..... .....++|+||||+++..++.... ..+.++++||+||+|.+.++ ....+
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~-----~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~--RG~~l 227 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCK-----EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDD--RGPVL 227 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCC-----TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGST--THHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCc-----cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCc--cHHHH
Confidence 9988888988887777654332 223468999999999866665432 23788999999999987653 33334
Q ss_pred HHHHHH----hhhcCCCeeEEEEeecCChhHHHHHHHHhcC-C-ceeeecccccccccceEEEEecCC--hHHHHHHHHH
Q 010762 270 LRIMKD----IERSSGHCQVLLFSATFNETVKNFVTRIVKD-Y-NQLFVKKEELSLESVKQYKVYCPD--ELAKVMVIRD 341 (502)
Q Consensus 270 ~~i~~~----l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~ 341 (502)
..++.. .....++.|+|++|||+|+ ..+++ .++.. + ..+........+..+.+.+..... .......+..
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA-~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVA-TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHH-HHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHH-HHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHH
Confidence 434433 2234457899999999985 33333 33322 1 111111122223334444333222 2222222222
Q ss_pred HHHH---hcccCCcEEEEcCChhhHHHHHHHHHhC-------------------------------------CCcEEEec
Q 010762 342 RIFE---LGEKMGQTIIFVRTKNSASALHKALKDF-------------------------------------GYEVTTIM 381 (502)
Q Consensus 342 ~l~~---~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l~ 381 (502)
.+.. ....++++||||+|++.|+.+++.|.+. ...+..+|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 2222 2235678999999999999998887541 23488999
Q ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE----ecCCCCCCCCCCCCccchhhhhcccccCCC--c
Q 010762 382 GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--K 455 (502)
Q Consensus 382 ~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~----~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~--~ 455 (502)
|+|++.+|..+.+.|++|.++|||||+.+++|+|+|+.++||. |+..... ..+.++.+|.||+|||||.|. .
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~--~~~ls~~~~~Qm~GRAGR~g~d~~ 463 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR--WTELGALDILQMLGRAGRPQYDTK 463 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTE--EEECCHHHHHHHHTTBSCTTTCSC
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCC--cccCCHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999999999996 5543211 112578999999999999874 6
Q ss_pred ceEEEEeeCCccHHHH
Q 010762 456 GVVFNLLMDGDDMIIM 471 (502)
Q Consensus 456 g~~~~~~~~~~~~~~~ 471 (502)
|.+++++...+...+.
T Consensus 464 G~~ii~~~~~~~~~~~ 479 (1724)
T 4f92_B 464 GEGILITSHGELQYYL 479 (1724)
T ss_dssp EEEEEEEESTTCCHHH
T ss_pred cEEEEEecchhHHHHH
Confidence 9999888765544443
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.5e-41 Score=347.82 Aligned_cols=314 Identities=16% Similarity=0.116 Sum_probs=226.7
Q ss_pred CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCc
Q 010762 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (502)
Q Consensus 121 ~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (502)
...|+|+|..+++.++.+ ++++++++||+|||++|+.++...+.. ...++|||+|+++|+.||++.+.+++...+.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~--~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN--RRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp EECCCHHHHHHHHHHHHH--SEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCCCHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 347999999999999998 899999999999999999998876642 2348999999999999999999998665555
Q ss_pred eeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC
Q 010762 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (502)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~ 280 (502)
.+..+.++...... ....++|+|+||+.|.. .....+.++++||+||||++.. ..+..+++.+ .
T Consensus 187 ~v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~---~ 250 (510)
T 2oca_A 187 MIKKIGGGASKDDK-----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISGL---N 250 (510)
T ss_dssp GEEECGGGCCTTGG-----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGC---T
T ss_pred ceEEEecCCccccc-----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhc---c
Confidence 66666655443321 23468999999997653 2334578899999999999875 2244444444 3
Q ss_pred CCeeEEEEeecCChhHHHHHH-HHhcCCceeeecccc------cccccceEEEEecCC--------------------hH
Q 010762 281 GHCQVLLFSATFNETVKNFVT-RIVKDYNQLFVKKEE------LSLESVKQYKVYCPD--------------------EL 333 (502)
Q Consensus 281 ~~~q~v~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------------------~~ 333 (502)
...+++++|||++........ ..+..+......... .....+.......+. ..
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLS 330 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCH
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccH
Confidence 367899999999765422211 111122221111110 001111111111110 01
Q ss_pred HHHHHHHHHHHHhccc-CCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEc-Cccc
Q 010762 334 AKVMVIRDRIFELGEK-MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST-DVLA 411 (502)
Q Consensus 334 ~k~~~l~~~l~~~~~~-~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T-~~~~ 411 (502)
.+...+...+...... +.++||||+ .+.+..+++.|...+..+..+||+|++.+|..+++.|++|+..||||| ++++
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~ 409 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS 409 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh
Confidence 2233344444444333 345566666 889999999999998899999999999999999999999999999999 9999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEee
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
+|+|+|++++||++++| .|+..|+||+||+||.|+.|.+++++.
T Consensus 410 ~GiDip~v~~vi~~~~~--------~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 410 TGISVKNLHHVVLAHGV--------KSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HSCCCCSEEEEEESSCC--------CSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccccCcEEEEeCCC--------CCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999 678899999999999998775555554
No 45
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5e-41 Score=342.27 Aligned_cols=276 Identities=18% Similarity=0.208 Sum_probs=200.2
Q ss_pred HHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEe
Q 010762 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECA 205 (502)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~ 205 (502)
+.|..+++.+..+ ++++++||||||||++|.+|+++ .+.++||++|||+||.|+++.+.+.. +..+...
T Consensus 220 ~~q~~i~~~L~~~--~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~ 288 (666)
T 3o8b_A 220 TDNSSPPAVPQSF--QVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIR 288 (666)
T ss_dssp CCCCSCCCCCSSC--EEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEE
T ss_pred HHHHHHHHHHHcC--CeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEE
Confidence 4444444444455 89999999999999999999986 35589999999999999998776554 3333333
Q ss_pred ecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeE
Q 010762 206 VPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQV 285 (502)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~ 285 (502)
+++.. ...+++|+|+||++| +....+.+.++++|||||||++.. +|...+..+++.+...+ ...+
T Consensus 289 vG~~~---------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~--~~~~~l~~Il~~l~~~~-~~ll 353 (666)
T 3o8b_A 289 TGVRT---------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDS--TTILGIGTVLDQAETAG-ARLV 353 (666)
T ss_dssp CSSCE---------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSH--HHHHHHHHHHHHTTTTT-CSEE
T ss_pred ECcEe---------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcCc--cHHHHHHHHHHhhhhcC-CceE
Confidence 33321 234579999999997 455667788999999999986543 67777777777776533 2237
Q ss_pred EEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHH
Q 010762 286 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365 (502)
Q Consensus 286 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~ 365 (502)
+++|||++..+. ...+....+... ......+ .... .. ......+++||||++++.++.
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~---~~~~i~~---~~~~-~~---------l~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALS---NTGEIPF---YGKA-IP---------IEAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECB---SCSSEEE---TTEE-EC---------GGGSSSSEEEEECSCHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeec---ccchhHH---HHhh-hh---------hhhccCCcEEEEeCCHHHHHH
Confidence 788999987421 011111110000 0000000 0000 00 011257899999999999999
Q ss_pred HHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEE----------Eec---------
Q 010762 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIV----------NYD--------- 426 (502)
Q Consensus 366 l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI----------~~~--------- 426 (502)
+++.|+..++.+..+||+|++.+ |.++..+|||||+++++|||+| +++|| |||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 99999999999999999999875 4456669999999999999997 99998 566
Q ss_pred --CCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 427 --PPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 427 --~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
.| .|.++|+||+||+|| |+.|. ++|+.+.+.
T Consensus 484 ~~~P--------~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 484 TTVP--------QDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp EEEE--------CBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred ccCc--------CCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 67 789999999999999 89999 989887654
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.3e-41 Score=352.36 Aligned_cols=316 Identities=19% Similarity=0.210 Sum_probs=213.0
Q ss_pred HHHhhCCCC-----CCcHHHH-----hhhhhhc------CCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 114 GLYVEMKFQ-----KPSKIQA-----ISLPMIL------TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 114 ~l~~~~g~~-----~p~~~Q~-----~~i~~il------~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
++.. +||. .|||+|. .+||.++ .| +|++++||||||||++|++|++..+.. .+.++||+
T Consensus 202 ~l~~-~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g--~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lil 276 (673)
T 2wv9_A 202 GLYG-NGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKR--QLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVL 276 (673)
T ss_dssp EEEE-EEEECSSSCEEEEEECC-------CCCCCGGGGSTT--CEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEE
T ss_pred Eeee-ccccccCCCccCceeeccccccchHHHhhHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEE
Confidence 4443 6777 8999999 9999998 77 999999999999999999999987643 45689999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+||++||.|+++.+..+. +. ... .. .......+.-+-+.+.+.+.+.+... ..+.++++||+||||
T Consensus 277 aPTr~La~Q~~~~l~~~~----i~--~~~--~~-----l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGLP----VR--YLT--PA-----VQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAH 342 (673)
T ss_dssp ESSHHHHHHHHHHTTTSC----CE--ECC--C--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTT
T ss_pred ccHHHHHHHHHHHHhcCC----ee--eec--cc-----ccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCc
Confidence 999999999999887542 11 110 00 00011111234455556555544443 468899999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHH
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 337 (502)
++.. .+...+..+...+. ...+|+++||||++..+..+.. .... +.......+... ..
T Consensus 343 ~~~~--~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~i~~~~~----~~~~------------i~~v~~~~~~~~--~~ 400 (673)
T 2wv9_A 343 FTDP--ASIAARGYIATRVE--AGEAAAIFMTATPPGTSDPFPD----TNSP------------VHDVSSEIPDRA--WS 400 (673)
T ss_dssp CCCH--HHHHHHHHHHHHHH--TTSCEEEEECSSCTTCCCSSCC----CSSC------------EEEEECCCCSSC--CS
T ss_pred ccCc--cHHHHHHHHHHhcc--ccCCcEEEEcCCCChhhhhhcc----cCCc------------eEEEeeecCHHH--HH
Confidence 9821 12222222222222 1368999999999866432111 0000 000000011100 00
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCC
Q 010762 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (502)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~ 417 (502)
.+.. ......+++||||++++.++.++..|+..++.+..+||. +|..+++.|++|+.+|||||+++++|||+|
T Consensus 401 ~~l~---~l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip 473 (673)
T 2wv9_A 401 SGFE---WITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG 473 (673)
T ss_dssp SCCH---HHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC
T ss_pred HHHH---HHHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC
Confidence 0111 112257899999999999999999999999999999994 789999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCC------------CCCCCCccchhhhhcccccC-CCcceEEEEee--CCccHHHHHHHHHHh
Q 010762 418 QVNLIVNYDPPVKHG------------KHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLM--DGDDMIIMEKIERYF 478 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~------------~~~~~s~~~y~qr~GR~~R~-g~~g~~~~~~~--~~~~~~~~~~i~~~l 478 (502)
+++||+++.+..+. ...|.|.++|+||+||+||. |+.|.|++|+. ...+..++..++..+
T Consensus 474 -v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 474 -ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp -CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred -CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 99999843211100 01227899999999999999 78999999973 345555555555544
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.2e-41 Score=339.33 Aligned_cols=281 Identities=17% Similarity=0.210 Sum_probs=189.9
Q ss_pred hhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCc
Q 010762 134 MILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213 (502)
Q Consensus 134 ~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (502)
.++.| +|++++||||||||++|++|++..+.. .+.+++|++||++||.|+++.+..+. +... ....
T Consensus 4 ~l~~g--~~vlv~a~TGSGKT~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~--~~~~-- 69 (440)
T 1yks_A 4 MLKKG--MTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGLD------VKFH--TQAF-- 69 (440)
T ss_dssp TTSTT--CEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTSC------EEEE--SSCC--
T ss_pred HhhCC--CCEEEEcCCCCCHHHHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhcCC------eEEe--cccc--
Confidence 35667 999999999999999999999987643 35689999999999999999887432 1111 1100
Q ss_pred ccccCCCCCCCeEEEeCchHHHHHHHc--------CccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeE
Q 010762 214 VPISKRPPVTAQVVIGTPGTIKKWMSA--------KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQV 285 (502)
Q Consensus 214 ~~~~~~~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~ 285 (502)
-.|+||+++.+++.. ....+.++++||+||+|++ + .++...+..+...+. ..++|+
T Consensus 70 ------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~-~~~~~~~~~~~~~~~--~~~~~~ 133 (440)
T 1yks_A 70 ------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D-PASIAARGWAAHRAR--ANESAT 133 (440)
T ss_dssp ------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S-HHHHHHHHHHHHHHH--TTSCEE
T ss_pred ------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C-cchHHHHHHHHHHhc--cCCceE
Confidence 024555444322221 2234789999999999998 2 233322222222222 236899
Q ss_pred EEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHH
Q 010762 286 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365 (502)
Q Consensus 286 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~ 365 (502)
++||||+++.+..+.. ....+ ......++.... ..+...+. ..++++||||++++.++.
T Consensus 134 l~~SAT~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~--~~~~~~l~---~~~~~~lVF~~s~~~a~~ 192 (440)
T 1yks_A 134 ILMTATPPGTSDEFPH----SNGEI------------EDVQTDIPSEPW--NTGHDWIL---ADKRPTAWFLPSIRAANV 192 (440)
T ss_dssp EEECSSCTTCCCSSCC----CSSCE------------EEEECCCCSSCC--SSSCHHHH---HCCSCEEEECSCHHHHHH
T ss_pred EEEeCCCCchhhhhhh----cCCCe------------eEeeeccChHHH--HHHHHHHH---hcCCCEEEEeCCHHHHHH
Confidence 9999999876432211 11111 011111111100 00111122 246899999999999999
Q ss_pred HHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE-------------------ec
Q 010762 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN-------------------YD 426 (502)
Q Consensus 366 l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~-------------------~~ 426 (502)
+++.|+..++.+..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ |+
T Consensus 193 l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~ 267 (440)
T 1yks_A 193 MAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGP 267 (440)
T ss_dssp HHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccc
Confidence 99999999999999999 3588999999999999999999999999999 999996 78
Q ss_pred CCCCCCCCCCCCccchhhhhcccccC-CCcceEEEEe--eCCccHHHHHHHHHHh
Q 010762 427 PPVKHGKHLEPDCEVYLHRIGRAGRF-GRKGVVFNLL--MDGDDMIIMEKIERYF 478 (502)
Q Consensus 427 ~p~~~~~~~~~s~~~y~qr~GR~~R~-g~~g~~~~~~--~~~~~~~~~~~i~~~l 478 (502)
.| .+..+|+||+||+||. |++|.|++|+ ...++...+..+++.+
T Consensus 268 ~p--------~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 268 LR--------ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EE--------CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cc--------cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88 7899999999999997 6899999997 2455656666677665
No 48
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=304.56 Aligned_cols=213 Identities=45% Similarity=0.759 Sum_probs=182.9
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCC
Q 010762 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (502)
Q Consensus 92 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~ 171 (502)
...|..+..+|+++++++.++++|.. +||..|||+|.++||.++.|.++|++++||||||||++|++|++.++.....+
T Consensus 84 ~~~p~~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~ 162 (300)
T 3fmo_B 84 PNSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 162 (300)
T ss_dssp TTCCCCCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCS
T ss_pred CCCCcCCcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCC
Confidence 34455677899999999999999987 99999999999999999987568999999999999999999999999887778
Q ss_pred CeEEEecCcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-CccCCCceE
Q 010762 172 PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLK 249 (502)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~ 249 (502)
+++|||+||++||.|+++.++.++... ++.+.+.+++..... .....++|+|+||++|++++.. ..+.+.+++
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~ 237 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCS
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-----hhcCCCCEEEECHHHHHHHHHhcCCCChhhce
Confidence 899999999999999999999998764 466666666554322 2244689999999999999976 556789999
Q ss_pred EEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeec
Q 010762 250 ILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313 (502)
Q Consensus 250 ~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
+|||||||+|++..+|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.
T Consensus 238 ~lVlDEad~l~~~~~~~~~~~~i~~~~~~---~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPR---NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EEEETTHHHHHHSTTHHHHHHHHHTTSCT---TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EEEEeCHHHHhhccCcHHHHHHHHHhCCC---CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999999999755888888877766654 78999999999999999999999998877654
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.3e-39 Score=327.17 Aligned_cols=292 Identities=21% Similarity=0.231 Sum_probs=210.6
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCce-
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT- 201 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~- 201 (502)
.|+|+|.++++.++.+ +++++++|||+|||++|+.++... +.++|||||+++|+.||.+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~--~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVD--KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTT--TEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhc--CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 5999999999999998 789999999999999999988754 568999999999999999998884 455
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCC
Q 010762 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG 281 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~ 281 (502)
+....++.. ..++|+|+||+.+...+.. ...++++||+||||++... +|.. ++..+ +
T Consensus 161 v~~~~g~~~-----------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~-~~~~----~~~~~----~ 217 (472)
T 2fwr_A 161 VGEFSGRIK-----------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYVQ----IAQMS----I 217 (472)
T ss_dssp EEEBSSSCB-----------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTST-TTHH----HHHTC----C
T ss_pred eEEECCCcC-----------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCCh-HHHH----HHHhc----C
Confidence 444443321 1368999999998876642 1245899999999999874 5643 33333 2
Q ss_pred CeeEEEEeecCChh-------------------HHHHHHHHhcCCceeeeccccc-------------------------
Q 010762 282 HCQVLLFSATFNET-------------------VKNFVTRIVKDYNQLFVKKEEL------------------------- 317 (502)
Q Consensus 282 ~~q~v~~SAT~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~------------------------- 317 (502)
..+++++|||+... ...+...++..+..........
T Consensus 218 ~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITL 297 (472)
T ss_dssp CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTT
T ss_pred CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 56899999998721 1221111111111100000000
Q ss_pred -ccccceEEEEe--------------------cCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc
Q 010762 318 -SLESVKQYKVY--------------------CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 376 (502)
Q Consensus 318 -~~~~~~~~~~~--------------------~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~ 376 (502)
......+.+.. ......|...+...+.. ..++++||||++...++.+++.|.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~----- 370 (472)
T 2fwr_A 298 RRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL----- 370 (472)
T ss_dssp TCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----
T ss_pred cchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----
Confidence 00000000000 00112344555554444 367899999999999999999873
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCc-
Q 010762 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK- 455 (502)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~- 455 (502)
+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++.| .|+..|+||+||+||.|+.
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~--------~s~~~~~Q~~GR~~R~g~~k 442 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS--------GSAREYIQRLGRILRPSKGK 442 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCS--------SCCHHHHHHHHHSBCCCTTT
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCC--------CCHHHHHHHHhhccCCCCCC
Confidence 6689999999999999999999999999999999999999999999999999 6789999999999999853
Q ss_pred c--eEEEEeeC
Q 010762 456 G--VVFNLLMD 464 (502)
Q Consensus 456 g--~~~~~~~~ 464 (502)
+ .++.|+..
T Consensus 443 ~~~~i~~lv~~ 453 (472)
T 2fwr_A 443 KEAVLYELISR 453 (472)
T ss_dssp CCEEEEEEEEC
T ss_pred ceEEEEEEEeC
Confidence 3 34455554
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=8e-39 Score=320.89 Aligned_cols=277 Identities=17% Similarity=0.177 Sum_probs=191.2
Q ss_pred hhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCC
Q 010762 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN 212 (502)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (502)
..+..+ ++++++||||||||++|++|++..+.. .+.++||++||++|+.|+++.+.. ..+........
T Consensus 16 ~~l~~~--~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~-- 83 (459)
T 2z83_A 16 NMLRKR--QMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQ-- 83 (459)
T ss_dssp GGGSTT--CEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC------
T ss_pred HHHhcC--CcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhcC------ceEeEEecccc--
Confidence 334445 899999999999999999999987643 456899999999999999998862 22211111110
Q ss_pred cccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecC
Q 010762 213 YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATF 292 (502)
Q Consensus 213 ~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~ 292 (502)
.....+.-+.++|.+.+...+... ..+.++++||+||||++... ......++..+. ..+.+|+++||||+
T Consensus 84 -----~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~---~~~~~~~~~~~~-~~~~~~~il~SAT~ 153 (459)
T 2z83_A 84 -----REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPA---SIAARGYIATKV-ELGEAAAIFMTATP 153 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEECSSC
T ss_pred -----cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCch---hhHHHHHHHHHh-ccCCccEEEEEcCC
Confidence 001123457788988887766654 45889999999999984210 000111111111 12478999999999
Q ss_pred ChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh
Q 010762 293 NETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD 372 (502)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 372 (502)
+..+..+... ..+... . ..... .......... +.. ..+++||||+++..|+.++..|+.
T Consensus 154 ~~~~~~~~~~--~~pi~~-~-~~~~~----------~~~~~~~~~~----l~~---~~~~~LVF~~s~~~~~~l~~~L~~ 212 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHD-L-QDEIP----------DRAWSSGYEW----ITE---YAGKTVWFVASVKMGNEIAMCLQR 212 (459)
T ss_dssp TTCCCSSCCC--SSCEEE-E-ECCCC----------SSCCSSCCHH----HHH---CCSCEEEECSCHHHHHHHHHHHHH
T ss_pred CcchhhhccC--CCCeEE-e-cccCC----------cchhHHHHHH----HHh---cCCCEEEEeCChHHHHHHHHHHHh
Confidence 8654221110 011100 0 00000 0000001111 222 367999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEE--------------------ecCCCCCC
Q 010762 373 FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN--------------------YDPPVKHG 432 (502)
Q Consensus 373 ~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~--------------------~~~p~~~~ 432 (502)
.++.+..+||. +|..+++.|++|..+|||||+++++|+|+|+ ++||+ |+.|
T Consensus 213 ~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p---- 283 (459)
T 2z83_A 213 AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP---- 283 (459)
T ss_dssp TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE----
T ss_pred cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC----
Confidence 99999999995 6788999999999999999999999999999 99999 5677
Q ss_pred CCCCCCccchhhhhcccccCCC-cceEEEEeeCC
Q 010762 433 KHLEPDCEVYLHRIGRAGRFGR-KGVVFNLLMDG 465 (502)
Q Consensus 433 ~~~~~s~~~y~qr~GR~~R~g~-~g~~~~~~~~~ 465 (502)
.|..+|+||+||+||.|. +|.+++|+...
T Consensus 284 ----~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ----ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ----CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ----CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 789999999999999997 99999999864
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.9e-38 Score=326.30 Aligned_cols=302 Identities=13% Similarity=0.159 Sum_probs=186.3
Q ss_pred CCcHHHHhhhhhhcC----CCCccEEEECcCCCcchhHhHHHHHhccCCC------CCCCeEEEecCcHHHHHHHH-HHH
Q 010762 123 KPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPN------LKAPQALCICPTRELAIQNL-EVL 191 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~----~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~------~~~~~~lil~Pt~~La~q~~-~~~ 191 (502)
.|+|+|..+++.++. |. ++++++++||||||++++..+...+... ..+.++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999876 42 6799999999999999655444333221 15679999999999999999 777
Q ss_pred HHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc----CccCCCceEEEEEeCchhhhcccCCHH
Q 010762 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA----KKLGFSRLKILVYDEADHMLDEAGFRD 267 (502)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~----~~~~~~~~~~lVlDEah~l~~~~~~~~ 267 (502)
+.++.. ...+. . .......+|+|+||++|...... ..+....+++||+||||++... ...
T Consensus 257 ~~~~~~----~~~~~-~---------~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~--~~~ 320 (590)
T 3h1t_A 257 TPFGDA----RHKIE-G---------GKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR--DNS 320 (590)
T ss_dssp TTTCSS----EEECC-C-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred Hhcchh----hhhhh-c---------cCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc--chH
Confidence 665432 11111 1 11223579999999999887642 2344567899999999998752 123
Q ss_pred HHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccccc---ccccceEEEEec---------------
Q 010762 268 DSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEEL---SLESVKQYKVYC--------------- 329 (502)
Q Consensus 268 ~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------- 329 (502)
.+..++..+. ..++++||||+..........++..+.......... .........+..
T Consensus 321 ~~~~il~~~~----~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 321 NWREILEYFE----PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp -CHHHHHHST----TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred HHHHHHHhCC----cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 3455555553 357999999987544333334443332211100000 000000000000
Q ss_pred ------------CCh-------HHHHHHHHHHH---HHhcccCCcEEEEcCChhhHHHHHHHHHhCCC--------cEEE
Q 010762 330 ------------PDE-------LAKVMVIRDRI---FELGEKMGQTIIFVRTKNSASALHKALKDFGY--------EVTT 379 (502)
Q Consensus 330 ------------~~~-------~~k~~~l~~~l---~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--------~~~~ 379 (502)
... ..+...+...+ .......+++||||+++..|+.++..|...+. .+..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 000 01111222222 22223568999999999999999999987643 3788
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCe---EEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCC
Q 010762 380 IMGATIQEERDKIVKEFKDGLTQ---VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454 (502)
Q Consensus 380 l~~~~~~~~r~~~~~~f~~~~~~---iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~ 454 (502)
+||.+++ +|..+++.|++|+.. |||||+++++|+|+|++++||++++| .|+..|+||+||+||.+.
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~--------~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVV--------NSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCC--------CCHHHHHHHHTTSCCCBG
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecC--------CChHHHHHHHhhhcccCc
Confidence 9999864 799999999998765 89999999999999999999999999 789999999999999874
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.8e-37 Score=308.61 Aligned_cols=269 Identities=17% Similarity=0.164 Sum_probs=186.7
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
+++++++||||||||++|++|++..+.. .+.+++|++||++|+.|+++.+. ++.+....+... ..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~-------~~ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ-------SE 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc-------cc
Confidence 3899999999999999999999965532 45689999999999999998775 233332222211 01
Q ss_pred CCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHH
Q 010762 220 PPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNF 299 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~ 299 (502)
...+.-+.+.|.+.+.+.+.. ...+.++++||+||+|++.. ++...... +..+. ..+.+|+++||||+++.+..+
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~--~~~~~~~~-l~~~~-~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 67 RTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDP--ASVAARGY-IETRV-SMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp --CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSH--HHHHHHHH-HHHHH-HTTSCEEEEEESSCTTCCCSS
T ss_pred CCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCc--cHHHHHHH-HHHHh-hCCCCcEEEEeCCCCcchhhh
Confidence 111234777899988776666 45588999999999999732 23333332 22222 124789999999998743211
Q ss_pred HHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEE
Q 010762 300 VTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTT 379 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~ 379 (502)
... ... +.......+.. +...+...+. ...+++||||++++.++.+++.|+..++.+..
T Consensus 142 ~~~---~~~-------------i~~~~~~~~~~--~~~~~~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS---NSP-------------IIDEETRIPDK--AWNSGYEWIT---EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC---SSC-------------CEEEECCCCSS--CCSSCCHHHH---SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC---CCc-------------eeeccccCCHH--HHHHHHHHHH---cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 100 000 00000001100 0011111122 24678999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCE-----------------EEEecCCCCCCCCCCCCccch
Q 010762 380 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL-----------------IVNYDPPVKHGKHLEPDCEVY 442 (502)
Q Consensus 380 l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~-----------------VI~~~~p~~~~~~~~~s~~~y 442 (502)
+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.| .+..+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p--------~~~~~~ 267 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIA--------ITPASA 267 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEE--------CCHHHH
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeeccccc--------CCHHHH
Confidence 9997 578899999999999999999999999999 655 5677888 789999
Q ss_pred hhhhcccccCCC-cceEEEEe
Q 010762 443 LHRIGRAGRFGR-KGVVFNLL 462 (502)
Q Consensus 443 ~qr~GR~~R~g~-~g~~~~~~ 462 (502)
+||+||+||.|. .|.++++.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 999999999985 45555554
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.1e-35 Score=306.84 Aligned_cols=308 Identities=17% Similarity=0.154 Sum_probs=209.8
Q ss_pred HHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEee
Q 010762 127 IQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAV 206 (502)
Q Consensus 127 ~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~ 206 (502)
.|.......+.| ++++++||||||||+..+..+... ...+|++|||+||.|+++.+... ++.+....
T Consensus 144 ~~~~p~ar~l~r--k~vlv~apTGSGKT~~al~~l~~~-------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~llt 210 (677)
T 3rc3_A 144 PNWYPDARAMQR--KIIFHSGPTNSGKTYHAIQKYFSA-------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVT 210 (677)
T ss_dssp GGGCHHHHTSCC--EEEEEECCTTSSHHHHHHHHHHHS-------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEEC
T ss_pred hhhCHHHHhcCC--CEEEEEcCCCCCHHHHHHHHHHhc-------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEE
Confidence 444444556777 999999999999999544444322 24599999999999999998876 44555555
Q ss_pred cCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEE
Q 010762 207 PTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVL 286 (502)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v 286 (502)
|+.... ........+++++|++.+. ....+++||+||||++.+ .+|...+..++..+.. ...+++
T Consensus 211 G~~~~i----v~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d-~~~g~~~~~~l~~l~~--~~i~il 275 (677)
T 3rc3_A 211 GEERVT----VQPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRD-PARGWAWTRALLGLCA--EEVHLC 275 (677)
T ss_dssp SSCEEC----CSTTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGC-TTTHHHHHHHHHHCCE--EEEEEE
T ss_pred CCeeEE----ecCCCcccceeEecHhHhh--------hcccCCEEEEecceecCC-ccchHHHHHHHHccCc--cceEEE
Confidence 443221 1111123578888875432 246789999999999986 4788888878777752 367999
Q ss_pred EEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHH
Q 010762 287 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASAL 366 (502)
Q Consensus 287 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l 366 (502)
++|||. +.+..+.... .....+.... ...... . ...... . +. ......+|||++++.++.+
T Consensus 276 ~~SAT~-~~i~~l~~~~-~~~~~v~~~~---r~~~l~---~-~~~~l~---~----l~---~~~~g~iIf~~s~~~ie~l 336 (677)
T 3rc3_A 276 GEPAAI-DLVMELMYTT-GEEVEVRDYK---RLTPIS---V-LDHALE---S----LD---NLRPGDCIVCFSKNDIYSV 336 (677)
T ss_dssp ECGGGH-HHHHHHHHHH-TCCEEEEECC---CSSCEE---E-CSSCCC---S----GG---GCCTTEEEECSSHHHHHHH
T ss_pred eccchH-HHHHHHHHhc-CCceEEEEee---ecchHH---H-HHHHHH---H----HH---hcCCCCEEEEcCHHHHHHH
Confidence 999994 2333333322 2222221110 000000 0 000000 0 11 1234568999999999999
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEcCccccCCCCCCCCEEEEecCCCC------CCCCCCCC
Q 010762 367 HKALKDFGYEVTTIMGATIQEERDKIVKEFKD--GLTQVLISTDVLARGFDQQQVNLIVNYDPPVK------HGKHLEPD 438 (502)
Q Consensus 367 ~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~--~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~------~~~~~~~s 438 (502)
+..|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ ++++||+++++.. .....|.|
T Consensus 337 a~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s 415 (677)
T 3rc3_A 337 SRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPIT 415 (677)
T ss_dssp HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCC
T ss_pred HHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCC
Confidence 99999999999999999999999999999999 889999999999999999 9999999999531 11122478
Q ss_pred ccchhhhhcccccCCCc---ceEEEEeeCCccHHHHHHHHHHhCCcccc
Q 010762 439 CEVYLHRIGRAGRFGRK---GVVFNLLMDGDDMIIMEKIERYFDIKVTE 484 (502)
Q Consensus 439 ~~~y~qr~GR~~R~g~~---g~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 484 (502)
..+|+||+||+||.|.. |.|+.++ .++...+..+.......++.
T Consensus 416 ~~~~~QR~GRAGR~g~~g~~G~v~~l~--~~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 416 TSQALQIAGRAGRFSSRFKEGEVTTMN--HEDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp HHHHHHHHTTBTCTTSSCSSEEEEESS--TTHHHHHHHHHHSCCCCCCC
T ss_pred HHHHHHHhcCCCCCCCCCCCEEEEEEe--cchHHHHHHHHhcCcchhhh
Confidence 99999999999999964 6666544 33444555555554444444
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=7.4e-37 Score=281.28 Aligned_cols=216 Identities=26% Similarity=0.428 Sum_probs=185.3
Q ss_pred cCCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC---
Q 010762 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--- 167 (502)
Q Consensus 91 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~--- 167 (502)
.+...+.+..+|.++++++.+++.+.+ +||..|+|+|.++|+.++.| +|++++||||||||++|++|++..+..
T Consensus 20 ~~~~~p~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g--~~~l~~apTGsGKT~~~~l~~l~~l~~~~~ 96 (242)
T 3fe2_A 20 RGHNCPKPVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSG--LDMVGVAQTGSGKTLSYLLPAIVHINHQPF 96 (242)
T ss_dssp ESSCCCCCCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHT--CCEEEEECTTSCHHHHHHHHHHHHHHTSCC
T ss_pred eCCCCCCccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCcCHHHHHHHHHHHHHHHhccc
Confidence 355566778999999999999999987 99999999999999999999 999999999999999999999988753
Q ss_pred --CCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCC
Q 010762 168 --NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245 (502)
Q Consensus 168 --~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 245 (502)
...++++||++||++|+.|+++.+++++...++.+.+.+++....... .....+++|+|+||++|.+++......+
T Consensus 97 ~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 97 LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI--RDLERGVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH--HHHHHCCSEEEECHHHHHHHHHHTSCCC
T ss_pred cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH--HHhcCCCCEEEECHHHHHHHHHcCCCCc
Confidence 235778999999999999999999999988888888877765433211 1112247999999999999999888889
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccc
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 315 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 315 (502)
.++++||+||||++.+ .+|...+..++..++. .+|+++||||+++.+..++..++.++..+.+...
T Consensus 175 ~~~~~lViDEah~l~~-~~~~~~~~~i~~~~~~---~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLD-MGFEPQIRKIVDQIRP---DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TTCCEEEETTHHHHHH-TTCHHHHHHHHTTSCS---SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred ccccEEEEeCHHHHhh-hCcHHHHHHHHHhCCc---cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999998 4899998888777654 7899999999999999999999998888776543
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.3e-36 Score=325.36 Aligned_cols=324 Identities=17% Similarity=0.136 Sum_probs=218.5
Q ss_pred CCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCce
Q 010762 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (502)
..|+|+|..++..++...+.+++++++||+|||++++..+...+.. ....++|||||+ .|+.||...+.+.. ++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCCCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 3599999999999887644789999999999999987777655533 334579999999 99999999997665 333
Q ss_pred eeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-CccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC
Q 010762 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (502)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~ 280 (502)
+....+.................+|+|+|++.+...... ..+...++++||+||||++.............+..+..
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~-- 304 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE-- 304 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--
Confidence 333322110000011112233578999999988642211 11335578999999999997632222122334444432
Q ss_pred CCeeEEEEeecCCh----hHHHHHHHH------------------h---------cCCce--------------------
Q 010762 281 GHCQVLLFSATFNE----TVKNFVTRI------------------V---------KDYNQ-------------------- 309 (502)
Q Consensus 281 ~~~q~v~~SAT~~~----~~~~~~~~~------------------~---------~~~~~-------------------- 309 (502)
...+++++|||+.. ++..++..+ . .....
T Consensus 305 ~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 305 HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 13468999999742 111100000 0 00000
Q ss_pred -------------------------------eeec--cc---ccccccceEEEE--------------------------
Q 010762 310 -------------------------------LFVK--KE---ELSLESVKQYKV-------------------------- 327 (502)
Q Consensus 310 -------------------------------~~~~--~~---~~~~~~~~~~~~-------------------------- 327 (502)
+... .. ..+.........
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRA 464 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGT
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHH
Confidence 0000 00 000000000000
Q ss_pred ------------------ecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh-CCCcEEEecCCCCHHH
Q 010762 328 ------------------YCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEE 388 (502)
Q Consensus 328 ------------------~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~ 388 (502)
.......|...+...+.. ..++++||||+++..+..++..|.. .|+.+..+||+|++.+
T Consensus 465 ~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 465 RDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIE 542 (968)
T ss_dssp HHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTH
T ss_pred hhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 011223456666664444 3688999999999999999999994 6999999999999999
Q ss_pred HHHHHHHHHcCC--CeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEe
Q 010762 389 RDKIVKEFKDGL--TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLL 462 (502)
Q Consensus 389 r~~~~~~f~~~~--~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~ 462 (502)
|..+++.|++|+ ++|||||+++++|+|+|++++||+||+| .++..|.||+||+||.|+.|.+++++
T Consensus 543 R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p--------~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP--------FNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp HHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCC--------SSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred HHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCC--------CCHHHHHHHhhccccCCCCceEEEEE
Confidence 999999999998 9999999999999999999999999999 57899999999999999988655554
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.4e-35 Score=271.69 Aligned_cols=210 Identities=32% Similarity=0.544 Sum_probs=174.8
Q ss_pred CCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEE
Q 010762 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (502)
Q Consensus 96 ~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~l 175 (502)
+.+..+|+++++++.+++.+.. +||..|+|+|.++++.++.| +++++++|||||||++|++|++..+.....+.++|
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~--~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~l 102 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKG--YDVIAQAQSGTGKTATFAISILQQLEIEFKETQAL 102 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 3456789999999999999986 99999999999999999998 99999999999999999999999987666778999
Q ss_pred EecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeC
Q 010762 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (502)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDE 255 (502)
|++||++|+.|+++.+++++...++.+....++..... .........++|+|+||++|.+++......+.++++||+||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 103 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN-EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH-HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 99999999999999999998877777776666554322 11222233489999999999999988777888999999999
Q ss_pred chhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeec
Q 010762 256 ADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313 (502)
Q Consensus 256 ah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
||++.+ .+|...+..++..+.. .+|++++|||+++.+..++..++.++..+.+.
T Consensus 182 ah~~~~-~~~~~~l~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 182 ADEMLS-RGFKDQIYEIFQKLNT---SIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHHH-TTCHHHHHHHHHHSCT---TCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred chHhhc-cCcHHHHHHHHHhCCC---CCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999987 4898888888877654 78999999999999999999999888776543
No 57
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-35 Score=267.50 Aligned_cols=206 Identities=31% Similarity=0.510 Sum_probs=176.3
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+++++++.+++.+.+ +||..|+|+|.++++.++.| +++++++|||||||++|++|++..+.....+.++||++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 79 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRG--ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITA 79 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHT--CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEc
Confidence 4579999999999999986 99999999999999999998 99999999999999999999999987766778999999
Q ss_pred CcHHHHHHHHHHHHHhhccc----CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEe
Q 010762 179 PTRELAIQNLEVLRKMGKHT----GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlD 254 (502)
||++|+.|+++.++++.... ++.+.+..++.... ........+++|+|+||++|.+++......+.++++||+|
T Consensus 80 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 80 PTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ--KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH--HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred CcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH--HHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999988765 56665665554322 1222333468999999999999998877788999999999
Q ss_pred CchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeec
Q 010762 255 EADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313 (502)
Q Consensus 255 Eah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
|||++.+. +|...+..++..++. .+|++++|||++..+.+++..++.+|..+.+.
T Consensus 158 Eah~~~~~-~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 158 EADLMLDM-GFITDVDQIAARMPK---DLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp SHHHHHHT-TCHHHHHHHHHTSCT---TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred CchHHhhh-ChHHHHHHHHHhCCc---ccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999974 888888888777654 77999999999999999999999988776543
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.1e-35 Score=269.44 Aligned_cols=212 Identities=28% Similarity=0.428 Sum_probs=174.3
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCC
Q 010762 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (502)
Q Consensus 92 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~ 171 (502)
++..+.+..+|+++++++.+++.+.+ +||..|+|+|.++++.++.| +|+++++|||||||++|++|++..+.....+
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~ 92 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCG--LDLIVQAKSGTGKTCVFSTIALDSLVLENLS 92 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHCCTTSCS
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 44455667889999999999999986 99999999999999999998 9999999999999999999999998766667
Q ss_pred CeEEEecCcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEE
Q 010762 172 PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (502)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (502)
+++||++||++|+.|+++.+++++... ++.+.+..++........ ...+++|+|+||++|.+++....+.+.++++
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT---RLKKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH---HTTSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH---hccCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 899999999999999999999987654 666666666543322111 1135899999999999999888778899999
Q ss_pred EEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeee
Q 010762 251 LVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312 (502)
Q Consensus 251 lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 312 (502)
||+||||++.+...|...+..++..++. .+|++++|||+++.+..++..++.++..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~---~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPA---SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCS---SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCC---CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999752399888888887754 6799999999999999988888887766543
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=7.5e-36 Score=276.70 Aligned_cols=221 Identities=29% Similarity=0.481 Sum_probs=178.3
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC---------
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--------- 168 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~--------- 168 (502)
+..+|+++++++.+++.|.. +||..|+|+|.++|+.++.| +|++++||||||||++|++|++..+...
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 97 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEH--RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 97 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccc
Confidence 67789999999999999986 99999999999999999999 9999999999999999999999887432
Q ss_pred CCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCce
Q 010762 169 LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (502)
Q Consensus 169 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 248 (502)
..++++||++||++|+.|+++.+++++...++.+....++....... .....+++|+|+||++|.+++....+.+.++
T Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 98 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI--REVQMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH--HHHSSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH--HHhCCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 23468999999999999999999999888777777777665433211 1122358999999999999999888888999
Q ss_pred EEEEEeCchhhhcccCCHHHHHHHHHHhhhc-CCCeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceE
Q 010762 249 KILVYDEADHMLDEAGFRDDSLRIMKDIERS-SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQ 324 (502)
Q Consensus 249 ~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (502)
++||+||||++.+. +|...+..++..+... ...+|+++||||+++.+..++..++.++..+.+.........+.|
T Consensus 176 ~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 176 KYIVLDEADRMLDM-GFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp CEEEEETHHHHHHT-TCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred CEEEEeCHHHHHhC-chHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 99999999999974 8999888888754321 125799999999999999999999998888877666555555554
No 60
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1e-34 Score=264.17 Aligned_cols=208 Identities=33% Similarity=0.546 Sum_probs=175.1
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
...+|+++++++.+++.+.. +||..|+|+|.++++.++.| +++++++|||||||++|++|++..+.....++++||+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 88 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcC--CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEE
Confidence 45689999999999999986 89999999999999999998 9999999999999999999999998777777899999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+|+++|+.|+++.+.+++...++.+....++....... .....++|+|+||++|.+++......+.++++||+||||
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA---EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH---hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 99999999999999999888888777777665433211 111238999999999999998888888999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccc
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 315 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 315 (502)
++.+ .+|...+..++..++. ..|++++|||+++.+..++..++.++..+.+...
T Consensus 166 ~~~~-~~~~~~l~~i~~~~~~---~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 166 EMLS-SGFKEQIYQIFTLLPP---TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHH-TTCHHHHHHHHHHSCT---TCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HHhh-hhhHHHHHHHHHhCCc---cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9987 4788888888777654 7899999999999999999999998877765543
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.4e-35 Score=261.10 Aligned_cols=202 Identities=33% Similarity=0.511 Sum_probs=173.4
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
.+|+++++++.+++.+.+ +||..|+|+|.++++.++.| +++++++|||||||++|++|++..+.....++++||++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 79 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTT--CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccC--CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeC
Confidence 479999999999999986 99999999999999999998 999999999999999999999999877667789999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchh
Q 010762 180 TRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (502)
Q Consensus 180 t~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~ 258 (502)
+++|+.|+++.+.++.... ++.+....++...... ......+++|+|+||++|.+++......+.++++||+||||+
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD--IMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHH--HHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHH--HHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 9999999999999998766 5666666555432211 112234689999999999999988777889999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCcee
Q 010762 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQL 310 (502)
Q Consensus 259 l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 310 (502)
+.+ .+|...+..++..++. ++|++++|||++..+..++..++.+|..+
T Consensus 158 ~~~-~~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLS-QDFVQIMEDIILTLPK---NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTS-TTTHHHHHHHHHHSCT---TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHh-hCcHHHHHHHHHhCCc---cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 987 4888888888777754 67999999999999999999998877543
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=268.44 Aligned_cols=208 Identities=28% Similarity=0.430 Sum_probs=172.0
Q ss_pred CCCCCCCCccC-CCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC----
Q 010762 94 TPYTSATTFED-LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---- 168 (502)
Q Consensus 94 ~~~~~~~~f~~-~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~---- 168 (502)
..+.+..+|.+ +++++.+++.+.+ +||..|+|+|.++|+.++.| +|++++||||||||++|++|++..+...
T Consensus 13 ~~p~p~~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 13 LIPKPTCRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQG--IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp CCCCCCCSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred cCCCChhhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34456778998 7999999999987 89999999999999999998 9999999999999999999999877532
Q ss_pred --CCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCC
Q 010762 169 --LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFS 246 (502)
Q Consensus 169 --~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 246 (502)
..++++||++||++|+.|+++.+.++. ..++.+.+.+++...... ......+++|+|+||++|.+++......+.
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQ--IEDISKGVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------C--HHHHHSCCSEEEECHHHHHHHHHTTCCCCT
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHH--HHHhcCCCCEEEECHHHHHHHHHcCCcCcc
Confidence 356789999999999999999999986 345666666665543321 111223579999999999999988888899
Q ss_pred ceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceee
Q 010762 247 RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLF 311 (502)
Q Consensus 247 ~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 311 (502)
++++||+||||++.+. +|...+..++..+.. ++|+++||||+++.+..++..++.++..+.
T Consensus 167 ~~~~lViDEah~~~~~-~~~~~~~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 167 SITYLVIDEADKMLDM-EFEPQIRKILLDVRP---DRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp TCCEEEECCHHHHHHT-TCHHHHHHHHHHSCS---SCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred cceEEEEECHHHHhcc-chHHHHHHHHHhCCc---CCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999984 899999988877754 789999999999999999999988876654
No 63
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.6e-34 Score=292.34 Aligned_cols=311 Identities=19% Similarity=0.203 Sum_probs=211.0
Q ss_pred CCcHHHHhhhhhhc----CCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 123 KPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 123 ~p~~~Q~~~i~~il----~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.|+|+|.++++.+. .+ ++++++++||+|||++++..+ ..+.......++|||||+ .|+.||.+.+.++....
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i-~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVF-SDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHH-HHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTS
T ss_pred cchHHHHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHH-HHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCc
Confidence 59999999998774 34 789999999999999965544 444333445689999995 68999999999987543
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhh
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~ 278 (502)
.+....+... .......+|+|+||+.+..... +....+++||+||||++.+. .. .....+..+.
T Consensus 113 --~v~~~~g~~~-------~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~-~~--~~~~~l~~l~- 176 (500)
T 1z63_A 113 --RFAVFHEDRS-------KIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNP-QT--KIFKAVKELK- 176 (500)
T ss_dssp --CEEECSSSTT-------SCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCT-TS--HHHHHHHTSC-
T ss_pred --eEEEEecCch-------hccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCH-hH--HHHHHHHhhc-
Confidence 3333333221 1122357899999999865433 33457899999999999763 21 2233333332
Q ss_pred cCCCeeEEEEeecCChh-HHHHH------------------------------------HHHhcCCceeeecccc----c
Q 010762 279 SSGHCQVLLFSATFNET-VKNFV------------------------------------TRIVKDYNQLFVKKEE----L 317 (502)
Q Consensus 279 ~~~~~q~v~~SAT~~~~-~~~~~------------------------------------~~~~~~~~~~~~~~~~----~ 317 (502)
..+.+++|||+... ..++. ..++. +..+...... .
T Consensus 177 ---~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 177 ---SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIIN 252 (500)
T ss_dssp ---EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHT
T ss_pred ---cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhh
Confidence 45789999997432 22111 11111 1111100000 0
Q ss_pred ccccceEEEEecC--------------------------------------------------------ChHHHHHHHHH
Q 010762 318 SLESVKQYKVYCP--------------------------------------------------------DELAKVMVIRD 341 (502)
Q Consensus 318 ~~~~~~~~~~~~~--------------------------------------------------------~~~~k~~~l~~ 341 (502)
.........+.+. ....|...+.+
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 1111111111111 01234444455
Q ss_pred HHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcC-CCe-EEEEcCccccCCCCCC
Q 010762 342 RIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFKDG-LTQ-VLISTDVLARGFDQQQ 418 (502)
Q Consensus 342 ~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~-iLv~T~~~~~Gldi~~ 418 (502)
.+......+.++||||++...+..++..|... ++.+..+||++++.+|.++++.|+++ ... +|++|+++++|+|+|+
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 55555567889999999999999999999875 99999999999999999999999988 454 7999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceE--EEEeeCC
Q 010762 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV--FNLLMDG 465 (502)
Q Consensus 419 v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~--~~~~~~~ 465 (502)
+++||+||+|| ++..|.||+||++|.|+.+.+ +.|+..+
T Consensus 413 ~~~vi~~d~~~--------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 413 ANRVIHFDRWW--------NPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CSEEEESSCCS--------CC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCEEEEeCCCC--------CcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999995 677799999999999976654 5566543
No 64
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.6e-33 Score=282.35 Aligned_cols=331 Identities=15% Similarity=0.143 Sum_probs=237.7
Q ss_pred HhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 116 ~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
...+|+. |+++|..+.-.+..| + |..+.||+|||+++.+|++-... .+..+.|++|++.||.|-++++..+.
T Consensus 69 ~R~lg~r-~~dvQligg~~L~~G--~--iaEM~TGEGKTLva~lp~~lnAL---~G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 69 RRTLGMR-PFDVQVMGGIALHEG--K--VAEMKTGEGKTLAATMPIYLNAL---IGKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp HHHTSCC-CCHHHHHHHHHHHTT--C--EEECCTTSCHHHHTHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CcHHHHHHHHHHhCC--C--hhhccCCCCccHHHHHHHHHHHh---cCCceEEEeccHHHHHhHHHHHHHHH
Confidence 3346766 999999999988887 3 99999999999999999974332 46679999999999999999999999
Q ss_pred cccCceeeEeecCCC---------------------C-------------------------CcccccCCCCCCCeEEEe
Q 010762 196 KHTGITSECAVPTDS---------------------T-------------------------NYVPISKRPPVTAQVVIG 229 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~---------------------~-------------------------~~~~~~~~~~~~~~Ilv~ 229 (502)
..+|+++.+...... . ......++....|||.++
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 999999998887310 0 000111112235899999
Q ss_pred CchHH-HHHHHcC------ccCCCceEEEEEeCchhhhccc--------C----CHH-----------------------
Q 010762 230 TPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDEA--------G----FRD----------------------- 267 (502)
Q Consensus 230 Tp~~l-~~~l~~~------~~~~~~~~~lVlDEah~l~~~~--------~----~~~----------------------- 267 (502)
|..-| .++|+.+ ......+.+.|+||+|.++-+. | -..
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99887 4455432 2234678899999999754210 0 000
Q ss_pred ------------------------------HHHHHHHHhh------hcC--------------------C----------
Q 010762 268 ------------------------------DSLRIMKDIE------RSS--------------------G---------- 281 (502)
Q Consensus 268 ------------------------------~~~~i~~~l~------~~~--------------------~---------- 281 (502)
.+..+...+. +.. +
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 0000000000 000 0
Q ss_pred ----------------------------CeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChH
Q 010762 282 ----------------------------HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 333 (502)
Q Consensus 282 ----------------------------~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (502)
-.++.+||+|.......+...+- ...+.++ ...+.....+....+....
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~IP-tnkp~~R~d~~d~vy~t~~ 457 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVIP-THKPMIRKDHDDLVFRTQK 457 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEECC-CSSCCCCEECCCEEESSHH
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEEC-CCCCcceeecCcEEEecHH
Confidence 01688999999877666544442 2233332 2222233333223344667
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccC
Q 010762 334 AKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARG 413 (502)
Q Consensus 334 ~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 413 (502)
.|...+...+......+.++||||+|++.++.++..|...|+.+..+||++.+.++..+...|+.| .|+|||++++||
T Consensus 458 eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRG 535 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRG 535 (822)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTT
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCC
Confidence 788888887776655788999999999999999999999999999999996666665555566555 699999999999
Q ss_pred CCCC--------CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCcc
Q 010762 414 FDQQ--------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (502)
Q Consensus 414 ldi~--------~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~ 467 (502)
+||+ +..+||++++| .|...|+||+|||||.|.+|.+++|++..++
T Consensus 536 tDI~lg~~V~~~GglhVInte~P--------es~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERH--------ESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCCCTTTTTTTSCEEEESSCC--------SSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred cCccCCcchhhcCCCEEEecCCC--------CCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9998 66799999999 8999999999999999999999999997664
No 65
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=272.72 Aligned_cols=206 Identities=32% Similarity=0.450 Sum_probs=177.3
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEe
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil 177 (502)
...+|+++++++.+++.+.. +||..|+|+|.++++.++.| ++++++||||||||++|++|++..+.....++++||+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred ccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 35679999999999999986 99999999999999999999 9999999999999999999999988766667789999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHc-CccCCCceEEEEEeCc
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEA 256 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVlDEa 256 (502)
+||++|+.|+++.+++++...++.+.+..++...... ......+++|+|+||++|.+++.. ..+.+.++++||+|||
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQ--SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHH--HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHH--HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 9999999999999999998888888777766543221 111123589999999999999876 4567889999999999
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeee
Q 010762 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312 (502)
Q Consensus 257 h~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 312 (502)
|++.+. +|...+..++..++. .+|+++||||++..+..++..++.+|..+.+
T Consensus 196 h~l~~~-~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 196 DRILNM-DFETEVDKILKVIPR---DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHT-TCHHHHHHHHHSSCS---SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhcc-ChHHHHHHHHHhCCC---CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999984 899988888877654 6799999999999999999999998876654
No 66
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.9e-35 Score=267.90 Aligned_cols=219 Identities=26% Similarity=0.400 Sum_probs=179.7
Q ss_pred cCCCCCCCCCCccCC----CCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccC
Q 010762 91 TGDTPYTSATTFEDL----NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 91 ~~~~~~~~~~~f~~~----~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.+...+.+..+|+++ ++++.+++.+.+ +||..|+|+|.++|+.++.| ++++++||||||||++|++|++..+.
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHG--RELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 344566677889887 899999999987 99999999999999999999 99999999999999999999999886
Q ss_pred C-CCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC--cc
Q 010762 167 P-NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK--KL 243 (502)
Q Consensus 167 ~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~ 243 (502)
. ...+.++||++||++|+.|+++.+++++...++.+....++.... .........+++|+|+||++|.+++... .+
T Consensus 93 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 171 (245)
T 3dkp_A 93 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA-KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI 171 (245)
T ss_dssp SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH-TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSC
T ss_pred hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH-HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCc
Confidence 4 335668999999999999999999999888777666555433211 1122334457899999999999999876 46
Q ss_pred CCCceEEEEEeCchhhhcc--cCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeeccc
Q 010762 244 GFSRLKILVYDEADHMLDE--AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 315 (502)
Q Consensus 244 ~~~~~~~lVlDEah~l~~~--~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 315 (502)
.+.++++||+||||++.++ .+|...+..++..+.. .+.|+++||||+++.+..++..++.++..+.+...
T Consensus 172 ~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 172 DLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS--HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC--TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC--CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 7889999999999999874 4787877777665532 36799999999999999999999999888776543
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=263.23 Aligned_cols=207 Identities=30% Similarity=0.477 Sum_probs=173.9
Q ss_pred CCCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC----CCCCC
Q 010762 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP----NLKAP 172 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~----~~~~~ 172 (502)
.+..+|+++++++.+++.|.. +||..|+|+|.++++.++.| +++++++|||||||++|++|++..+.. ...++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 98 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQG--KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL 98 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred cccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc
Confidence 346689999999999999986 99999999999999999998 999999999999999999999987642 23467
Q ss_pred eEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-ccCCCceEEE
Q 010762 173 QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKIL 251 (502)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~l 251 (502)
++||++||++|+.|+++.++.++...++.+.+..++........ ...+++|+|+||++|.+++... .+.+.++++|
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE---RINNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHH---HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHH---hCCCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 89999999999999999999998887787777776654332111 1135899999999999988764 4667899999
Q ss_pred EEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeeec
Q 010762 252 VYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313 (502)
Q Consensus 252 VlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
|+||||++.+ .+|...+..++..++. .+|+++||||+++.+..+...++.+|..+.+.
T Consensus 176 ViDEah~~~~-~~~~~~~~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 176 VLDEADRILD-MGFADTMNAVIENLPK---KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EETTHHHHHH-TTTHHHHHHHHHTSCT---TSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEeChHHHhc-CCcHHHHHHHHHhCCC---CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999997 4888888888877754 77999999999999999999999888776543
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-34 Score=260.75 Aligned_cols=206 Identities=28% Similarity=0.463 Sum_probs=170.8
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+|+++++++.+++.+.+ +||..|+|+|.++++.++.| +++++++|||+|||++|++|++..+.....+.++||++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 89 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 89 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe
Confidence 4579999999999999987 99999999999999999998 99999999999999999999999987665667999999
Q ss_pred CcHHHHHHHHHHHHHhhccc-CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
|+++|+.|+++.++++.... ++.+....++...... ........++|+|+||++|.+++....+.+.++++||+||||
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD-EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 168 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHH-HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHH-HHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH
Confidence 99999999999999998765 5666666655432211 111111246899999999999998887888999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceee
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLF 311 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 311 (502)
++.++.+|...+..++..++. .+|++++|||++..+..++..++.+|..+.
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPH---EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCS---SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHhcccCcHHHHHHHHHhCCC---cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 998745677777766665543 789999999999999999998888876553
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=267.84 Aligned_cols=202 Identities=29% Similarity=0.417 Sum_probs=166.7
Q ss_pred CCCCccCCC--CCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC----CCC
Q 010762 98 SATTFEDLN--LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKA 171 (502)
Q Consensus 98 ~~~~f~~~~--l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~----~~~ 171 (502)
...+|++++ +++.+++.+.. +||..|+|+|.++++.++.| +|++++||||||||++|++|++..+... ..+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 126 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEG--RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNG 126 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHT--CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred ccCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCCchHHHHHHHHHHHHhccccccCC
Confidence 455788887 99999999987 99999999999999999999 9999999999999999999999876431 246
Q ss_pred CeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcC-ccCCCceEE
Q 010762 172 PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKI 250 (502)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~ 250 (502)
.++||++||++|+.|+++.+++++...+..+....++...... ......+++|+|+||+++.+++... .+.+.++++
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE--AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHH--HHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHH--HHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 7899999999999999999999998888877777665543221 1111224789999999999988775 367889999
Q ss_pred EEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCc
Q 010762 251 LVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYN 308 (502)
Q Consensus 251 lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~ 308 (502)
||+||||++.+. +|...+..++..++. .+|+++||||+++.+..++..++..+.
T Consensus 205 lViDEah~l~~~-~~~~~l~~i~~~~~~---~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 205 LVIDEADRILDV-GFEEELKQIIKLLPT---RRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EEECSHHHHHHT-TCHHHHHHHHHHSCS---SSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEEcChHHHhhh-hHHHHHHHHHHhCCC---CCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999984 899999988888765 679999999999999999888776543
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.5e-33 Score=253.25 Aligned_cols=201 Identities=33% Similarity=0.495 Sum_probs=168.4
Q ss_pred CccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC---CCCCCeEEEe
Q 010762 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKAPQALCI 177 (502)
Q Consensus 101 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~---~~~~~~~lil 177 (502)
+|+++++++.+++.+.+ +||..|+|+|.++++.+++| +++++++|||||||++|++|++..+.. ...++++||+
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEG--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCC--CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 69999999999999987 99999999999999999998 999999999999999999999998754 2356789999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCch
Q 010762 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (502)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah 257 (502)
+|+++|+.|+++.+.++... +.+....++...... ......+++|+|+||+++.+++......+.++++||+||||
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQ--KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHH--HHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred ECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHH--HHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 99999999999999998765 444455554432211 11111257999999999999998888888999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHhcCCceeee
Q 010762 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312 (502)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 312 (502)
++.+. +|...+..++..++. .+|++++|||+++.+..++..++.+|..+.+
T Consensus 155 ~~~~~-~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSM-GFEEEVEALLSATPP---SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHT-TCHHHHHHHHHTSCT---TSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred Hhhcc-chHHHHHHHHHhCCc---cCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99874 788888887776544 7799999999999999999999988876543
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=3e-33 Score=300.49 Aligned_cols=316 Identities=14% Similarity=0.106 Sum_probs=205.8
Q ss_pred CCCcHHHHhhhhhhcCC------------CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH
Q 010762 122 QKPSKIQAISLPMILTP------------PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~------------~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (502)
..|+|+|..|++.++.+ .+++++++++||||||+++ ++++..+.......++|||||+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 35999999999998751 1378999999999999996 6666655544445699999999999999999
Q ss_pred HHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc--cCCCceEEEEEeCchhhhcccCCHH
Q 010762 190 VLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLDEAGFRD 267 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~lVlDEah~l~~~~~~~~ 267 (502)
.+..++... +.++.+.... .......+++|+|+||++|..++.... ..+....+||+||||++... .
T Consensus 349 ~f~~f~~~~------v~~~~s~~~l-~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~----~ 417 (1038)
T 2w00_A 349 EYQRFSPDS------VNGSENTAGL-KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG----E 417 (1038)
T ss_dssp HHHTTSTTC------SSSSCCCHHH-HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH----H
T ss_pred HHHHhcccc------cccccCHHHH-HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch----H
Confidence 998876431 1121111110 000112357999999999999876532 23567899999999997642 2
Q ss_pred HHHHHHHHhhhcCCCeeEEEEeecCChhHH----HHHHHHhcCCceeeecc----cccccccceEEEEe-----------
Q 010762 268 DSLRIMKDIERSSGHCQVLLFSATFNETVK----NFVTRIVKDYNQLFVKK----EELSLESVKQYKVY----------- 328 (502)
Q Consensus 268 ~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------- 328 (502)
....+...+ ++.++++||||+..... .....++..+...+... ..... .+...+..
T Consensus 418 ~~~~I~~~~----p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 418 AQKNLKKKF----KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL-KFKVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp HHHHHHHHC----SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTC
T ss_pred HHHHHHHhC----CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC-CeEEEEEeccchhhhcccc
Confidence 233344433 35799999999874211 01122222221111000 00000 00000000
Q ss_pred -------------cCChHHHHHHHHHHHHH----hc------ccCCcEEEEcCChhhHHHHHHHHHhCC-----------
Q 010762 329 -------------CPDELAKVMVIRDRIFE----LG------EKMGQTIIFVRTKNSASALHKALKDFG----------- 374 (502)
Q Consensus 329 -------------~~~~~~k~~~l~~~l~~----~~------~~~~~~lVF~~s~~~~~~l~~~L~~~~----------- 374 (502)
.-....+...+...+.. .. ..+.++||||+|+..|..++..|...+
T Consensus 493 ~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~ 572 (1038)
T 2w00_A 493 TDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYK 572 (1038)
T ss_dssp CCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred ccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccc
Confidence 00011122222222222 11 134579999999999999999997654
Q ss_pred -CcE-EEecCC----------C----------CH-----------------------------HHHHHHHHHHHcCCCeE
Q 010762 375 -YEV-TTIMGA----------T----------IQ-----------------------------EERDKIVKEFKDGLTQV 403 (502)
Q Consensus 375 -~~~-~~l~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~i 403 (502)
+++ ..+|++ + ++ ..|..++++|++|.++|
T Consensus 573 ~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~I 652 (1038)
T 2w00_A 573 PLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDL 652 (1038)
T ss_dssp CCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSE
T ss_pred cCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeE
Confidence 555 455542 2 22 14888999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCc----ceEEEEee
Q 010762 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK----GVVFNLLM 463 (502)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~----g~~~~~~~ 463 (502)
||+|+++.+|+|+|.+ +++++|.| .+...|+||+||++|.+.. |.++.|+.
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkp--------l~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKN--------LRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESC--------CCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccC--------CCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999 77889999 6778899999999998753 67776664
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-31 Score=285.55 Aligned_cols=333 Identities=17% Similarity=0.195 Sum_probs=223.7
Q ss_pred CCcHHHHhhhhhhc----CCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 123 KPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 123 ~p~~~Q~~~i~~il----~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.++|+|..++..++ .+ +++|++++||+|||++++..+...+........+||||| ..|+.||.+.+.++...
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~--~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~- 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKG--DNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPD- 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTT--CCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTT-
T ss_pred CcCHHHHHHHHHHHHHhhcC--CCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCC-
Confidence 58999999998775 55 899999999999999976655544333344557899999 57899999999998754
Q ss_pred CceeeEeecCCCCCcc----------cccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHH
Q 010762 199 GITSECAVPTDSTNYV----------PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~ 268 (502)
+.+.+..+....... .........++|+|+|++.+...... +....+++||+||||++.+.. ..
T Consensus 312 -~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~---s~ 385 (800)
T 3mwy_W 312 -LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE---SS 385 (800)
T ss_dssp -CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS---SH
T ss_pred -ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch---hH
Confidence 333333333211100 00012334678999999999764332 223468899999999997521 12
Q ss_pred HHHHHHHhhhcCCCeeEEEEeecCCh----hHHHHHH------------------------------HHhcCCceeeecc
Q 010762 269 SLRIMKDIERSSGHCQVLLFSATFNE----TVKNFVT------------------------------RIVKDYNQLFVKK 314 (502)
Q Consensus 269 ~~~i~~~l~~~~~~~q~v~~SAT~~~----~~~~~~~------------------------------~~~~~~~~~~~~~ 314 (502)
....+..+. ....+++|||+-. ++-.++. ..+. +..+....
T Consensus 386 ~~~~l~~l~----~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-p~~lRR~k 460 (800)
T 3mwy_W 386 LYESLNSFK----VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQ-PFILRRLK 460 (800)
T ss_dssp HHHHHTTSE----EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTG-GGEEECCG
T ss_pred HHHHHHHhh----hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHh-HHHhhhhH
Confidence 333333332 3467999999721 1111111 0010 00000000
Q ss_pred ccc--ccccceEEEEecC--------------------------------------------------------------
Q 010762 315 EEL--SLESVKQYKVYCP-------------------------------------------------------------- 330 (502)
Q Consensus 315 ~~~--~~~~~~~~~~~~~-------------------------------------------------------------- 330 (502)
... .+.......+.+.
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 000 0000011111110
Q ss_pred ------------ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc
Q 010762 331 ------------DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398 (502)
Q Consensus 331 ------------~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (502)
....|+..+..++......+.++||||+....+..+...|...|+.+..+||+++..+|..++++|+.
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 01235556666666666678899999999999999999999999999999999999999999999998
Q ss_pred CCC---eEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcc--eEEEEeeCCc-cHHHHH
Q 010762 399 GLT---QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGD-DMIIME 472 (502)
Q Consensus 399 ~~~---~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g--~~~~~~~~~~-~~~~~~ 472 (502)
+.. .+|++|.+++.|||++.+++||+||+|| ++..+.||+||++|.|+.. .++.|++.+. +..++.
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w--------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~ 692 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW--------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 692 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS--------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHH
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCC--------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHH
Confidence 654 4899999999999999999999999995 6788999999999999754 4566676543 345555
Q ss_pred HHHHHh
Q 010762 473 KIERYF 478 (502)
Q Consensus 473 ~i~~~l 478 (502)
...+..
T Consensus 693 ~~~~K~ 698 (800)
T 3mwy_W 693 RARKKM 698 (800)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555554
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.3e-30 Score=269.91 Aligned_cols=323 Identities=14% Similarity=0.156 Sum_probs=212.3
Q ss_pred CCcHHHHhhhhhhcC-------CCCccEEEECcCCCcchhHhHHHHHhccCCCC----CCCeEEEecCcHHHHHHHHHHH
Q 010762 123 KPSKIQAISLPMILT-------PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~-------~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~----~~~~~lil~Pt~~La~q~~~~~ 191 (502)
.++|+|..++..++. ..++.+|++.+||+|||++++..+...+.... ...++|||||+ .|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 588999999988742 12378999999999999997776655443221 23469999997 7999999999
Q ss_pred HHhhcccCceeeEeecCCCCCcc----c--ccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCC
Q 010762 192 RKMGKHTGITSECAVPTDSTNYV----P--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGF 265 (502)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~ 265 (502)
.++... .+.+....++...... . .........+|+|+|++.+.... ..+....+++||+||||++.+. -
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~--~ 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNS--D 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTT--C
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCCh--h
Confidence 998765 3333334333211100 0 00111224789999999987644 2333457889999999999752 1
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEEeecCChhH-------HH------------HHHHH-----------------------
Q 010762 266 RDDSLRIMKDIERSSGHCQVLLFSATFNETV-------KN------------FVTRI----------------------- 303 (502)
Q Consensus 266 ~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~-------~~------------~~~~~----------------------- 303 (502)
......+..+. ....+++|||+-.+- .. +...+
T Consensus 209 -~~~~~al~~l~----~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 283 (644)
T 1z3i_X 209 -NQTYLALNSMN----AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283 (644)
T ss_dssp -HHHHHHHHHHC----CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred -hHHHHHHHhcc----cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHH
Confidence 22233333342 336799999963210 00 00000
Q ss_pred -------hcCCceeeecccc--cccccceEEEEecC--------------------------------------------
Q 010762 304 -------VKDYNQLFVKKEE--LSLESVKQYKVYCP-------------------------------------------- 330 (502)
Q Consensus 304 -------~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------------------------------- 330 (502)
+. +..+.-.... ..++......+.+.
T Consensus 284 ~~~L~~~l~-~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~h 362 (644)
T 1z3i_X 284 LQELISIVN-RCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNH 362 (644)
T ss_dssp HHHHHHHHH-HHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCC
Confidence 00 0000000000 00000111111110
Q ss_pred ---------------------------------ChHHHHHHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHhCCCc
Q 010762 331 ---------------------------------DELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFGYE 376 (502)
Q Consensus 331 ---------------------------------~~~~k~~~l~~~l~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~ 376 (502)
....|+..+...+.... ..+.++||||++...+..+...|...|+.
T Consensus 363 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~ 442 (644)
T 1z3i_X 363 PALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL 442 (644)
T ss_dssp THHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCC
Confidence 01223333333222221 24689999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCC---eEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC
Q 010762 377 VTTIMGATIQEERDKIVKEFKDGLT---QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG 453 (502)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~~~~---~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g 453 (502)
+..+||++++.+|..++++|+++.. .+|++|+++++|||++++++||+||+|| ++..|.|++||++|.|
T Consensus 443 ~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~w--------np~~~~Qa~gR~~R~G 514 (644)
T 1z3i_X 443 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW--------NPANDEQAMARVWRDG 514 (644)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCS--------SHHHHHHHHTTSSSTT
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCC--------CccHHHHHHHhhhhcC
Confidence 9999999999999999999999865 4899999999999999999999999995 7888999999999999
Q ss_pred Ccc--eEEEEeeCC
Q 010762 454 RKG--VVFNLLMDG 465 (502)
Q Consensus 454 ~~g--~~~~~~~~~ 465 (502)
+.. .++.|+..+
T Consensus 515 q~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 515 QKKTCYIYRLLSTG 528 (644)
T ss_dssp CCSCEEEEEEEETT
T ss_pred CCCceEEEEEEECC
Confidence 765 455666654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=7.2e-29 Score=253.29 Aligned_cols=134 Identities=17% Similarity=0.175 Sum_probs=111.7
Q ss_pred HhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 116 ~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
...+|+ .|+|+|..++|.++.| + ++.+.||+|||++|++|++.... .+..++|++||++||.|.++++..+.
T Consensus 73 ~R~lG~-~Pt~VQ~~~ip~LlqG--~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 73 KRYLGM-RHFDVQLIGGAVLHEG--K--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHTCC-CCCHHHHHHHHHHHTT--S--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHhCC-CCcHHHHhhcccccCC--c--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 344899 8999999999999998 5 99999999999999999964332 34579999999999999999999999
Q ss_pred cccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHH-HHHHHcCc------cCCC---ceEEEEEeCchhhhc
Q 010762 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFS---RLKILVYDEADHMLD 261 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~---~~~~lVlDEah~l~~ 261 (502)
..+++++.+++++...... .....++|+|+||++| .+++..+. +.+. .+.++|+||+|.|+.
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r----~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAER----RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HTTTCCEEECCTTCCHHHH----HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred HhcCCeEEEEeCCCCHHHH----HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 9999999988887653221 1222589999999999 88887653 4577 899999999999873
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=4.1e-29 Score=260.07 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCC
Q 010762 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGF 414 (502)
Q Consensus 335 k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gl 414 (502)
+...+...+......+.++||||+|+..++.++..|...|+.+..+||++++.+|..+++.|+.|...|||||+++++|+
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 503 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCc
Confidence 44445455555555678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCC
Q 010762 415 DQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (502)
Q Consensus 415 di~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~ 465 (502)
|+|++++||++|.+..+. |.|..+|+||+||+||.+ .|.+++|+...
T Consensus 504 Dip~v~lVI~~d~d~~G~---p~s~~~~iQr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 504 DIPEVSLVAILDADKEGF---LRSERSLIQTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp CCTTEEEEEETTTTSCSG---GGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred cCCCCCEEEEeCCcccCC---CCCHHHHHHHHCccCcCC-CCEEEEEEcCC
Confidence 999999999999832111 178999999999999985 89999998754
No 76
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=214.59 Aligned_cols=165 Identities=39% Similarity=0.698 Sum_probs=142.8
Q ss_pred cccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 010762 317 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396 (502)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f 396 (502)
..+..+.|+++.++....|...+...+... ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 346688999999988877888887754432 567999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHH
Q 010762 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 476 (502)
Q Consensus 397 ~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~ 476 (502)
++|..+|||||+++++|+|+|++++||+||+||.+... .+...|+||+||+||.|+.|.+++|+.+ .+...+..+++
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~--~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~ 157 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEE--PDYETYLHRIGRTGRFGKKGLAFNMIEV-DELPSLMKIQD 157 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCS--CCHHHHHHHHCBC----CCEEEEEEECG-GGHHHHHHHHH
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcccc--CCHHHHHHHhcccccCCCCceEEEEEcc-chHHHHHHHHH
Confidence 99999999999999999999999999999999765432 5789999999999999999999999975 46778899999
Q ss_pred HhCCcccccc
Q 010762 477 YFDIKVTEVR 486 (502)
Q Consensus 477 ~l~~~~~~~~ 486 (502)
.++..+++++
T Consensus 158 ~~~~~~~~~~ 167 (175)
T 2rb4_A 158 HFNSSIKQLN 167 (175)
T ss_dssp HHTCCCEEEC
T ss_pred HhcCcccccC
Confidence 9999999887
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=4.7e-29 Score=219.00 Aligned_cols=177 Identities=26% Similarity=0.399 Sum_probs=138.4
Q ss_pred HHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEe
Q 010762 301 TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTI 380 (502)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l 380 (502)
..++.+|..+.+.........+.+.+..+.. ..|...+...+.. ..+++||||+++..+..++..|...++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCG-GGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4566777777777777777888998888764 4677777664433 35689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEE
Q 010762 381 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460 (502)
Q Consensus 381 ~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~ 460 (502)
||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p--------~~~~~~~qr~GR~gR~g~~g~~i~ 156 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMP--------EEIENYVHRIGRTGCSGNTGIATT 156 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCC--------SSHHHHHHHHTTSCC---CCEEEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCC--------CCHHHHHHHhCccccCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999 689999999999999999999999
Q ss_pred EeeCCccHHHHHHHHHHhCCccccccCCH
Q 010762 461 LLMDGDDMIIMEKIERYFDIKVTEVRNSD 489 (502)
Q Consensus 461 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 489 (502)
|+++.++..++..+++.+.....++|..+
T Consensus 157 l~~~~~~~~~~~~l~~~l~~~~~~~p~~l 185 (191)
T 2p6n_A 157 FINKACDESVLMDLKALLLEAKQKVPPVL 185 (191)
T ss_dssp EECTTSCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred EEcCchhHHHHHHHHHHHHHccCcCCHHH
Confidence 99987788888999999987777776433
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.7e-28 Score=212.22 Aligned_cols=161 Identities=32% Similarity=0.556 Sum_probs=142.2
Q ss_pred cccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc
Q 010762 319 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398 (502)
Q Consensus 319 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (502)
+..+.|+++.+.. ..|...+...+... ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 4567788887764 56777777755443 56799999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHh
Q 010762 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYF 478 (502)
Q Consensus 399 ~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l 478 (502)
|...|||||+++++|+|+|++++||+||+| .|+..|+||+||+||.|+.|.+++|+.+.++..++..+++.+
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~ 151 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 151 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCC--------SSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCC--------CCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999 689999999999999999999999998777788899999999
Q ss_pred CCccccccCCHH
Q 010762 479 DIKVTEVRNSDE 490 (502)
Q Consensus 479 ~~~~~~~~~~~~ 490 (502)
+.++++++...+
T Consensus 152 ~~~~~~~~~~~~ 163 (172)
T 1t5i_A 152 EVNISELPDEID 163 (172)
T ss_dssp CCCEEECC----
T ss_pred hcchhhCChhhc
Confidence 999999985543
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=6e-28 Score=207.71 Aligned_cols=158 Identities=39% Similarity=0.675 Sum_probs=138.0
Q ss_pred cceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC
Q 010762 321 SVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400 (502)
Q Consensus 321 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~ 400 (502)
.+.|+++.+.....|...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 56788888877766888887755543 5689999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCC
Q 010762 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI 480 (502)
Q Consensus 401 ~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~ 480 (502)
.+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++|+.+ .+...+..++++++.
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p--------~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~~~~~~~ 151 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLP--------ANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYST 151 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCC--------SSGGGGGGSSCSCC-----CEEEEEEET-TTHHHHHHHHHHSSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCC--------CCHHHHHHHhcccccCCCCceEEEEEcc-hHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999 6899999999999999999999999985 467788999999999
Q ss_pred ccccccCCH
Q 010762 481 KVTEVRNSD 489 (502)
Q Consensus 481 ~~~~~~~~~ 489 (502)
++++++..+
T Consensus 152 ~~~~~~~~~ 160 (165)
T 1fuk_A 152 QIEELPSDI 160 (165)
T ss_dssp CCEECCSCC
T ss_pred CccccCccH
Confidence 999987554
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.6e-27 Score=204.48 Aligned_cols=157 Identities=32% Similarity=0.592 Sum_probs=140.1
Q ss_pred cccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 010762 317 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396 (502)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f 396 (502)
....++.+.+..+.. ..|...+...+... ..+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 345567888887764 56777777755543 567999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHH
Q 010762 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 476 (502)
Q Consensus 397 ~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~ 476 (502)
++|..+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++|+.+ .+..++..+++
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~ 152 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLP--------LEKESYVHRTGRTGRAGNKGKAISFVTA-FEKRFLADIEE 152 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCC--------SSHHHHHHHTTTSSCTTCCEEEEEEECG-GGHHHHHHHHH
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCC--------CCHHHHHHhccccCcCCCCceEEEEecH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999 6899999999999999999999999985 57788899999
Q ss_pred HhCCccccc
Q 010762 477 YFDIKVTEV 485 (502)
Q Consensus 477 ~l~~~~~~~ 485 (502)
.++.+++++
T Consensus 153 ~~~~~~~~~ 161 (163)
T 2hjv_A 153 YIGFEIQKI 161 (163)
T ss_dssp HHTSCCEEC
T ss_pred HHCCCcCcc
Confidence 999998765
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=207.31 Aligned_cols=165 Identities=30% Similarity=0.483 Sum_probs=129.2
Q ss_pred ccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 010762 316 ELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395 (502)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~ 395 (502)
.....++.|.+..++. ..|...+...+... ...+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.
T Consensus 14 ~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 14 GSTSENITQKVVWVEE-SDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp --CCTTEEEEEEECCG-GGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred CCCCCCceEEEEEeCc-HHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 3456678888888764 46777777755543 367899999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHH
Q 010762 396 FKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIE 475 (502)
Q Consensus 396 f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~ 475 (502)
|++|..+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++|+.+ .+...++.+.
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~ 162 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLP--------SDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLL 162 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCC--------SSHHHHHHHHTTBCCTTSCEEEEEEECG-GGGGGHHHHH
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCC--------CCHHHHHHHccccCCCCCCcEEEEEEch-hhHHHHHHHH
Confidence 999999999999999999999999999999999 6899999999999999999999999985 4667788899
Q ss_pred HHhCCccccccCCHHH
Q 010762 476 RYFDIKVTEVRNSDED 491 (502)
Q Consensus 476 ~~l~~~~~~~~~~~~~ 491 (502)
+.++....+++..+.+
T Consensus 163 ~~l~~~~~~~~~~l~~ 178 (185)
T 2jgn_A 163 DLLVEAKQEVPSWLEN 178 (185)
T ss_dssp HHHHHTTCCCCHHHHH
T ss_pred HHHHhccCCCCHHHHH
Confidence 9998887777644433
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=1.7e-26 Score=206.71 Aligned_cols=150 Identities=31% Similarity=0.520 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccc
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 411 (502)
...|...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||++++
T Consensus 15 ~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp TTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 345777777755433 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc-CCHH
Q 010762 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSDE 490 (502)
Q Consensus 412 ~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~ 490 (502)
+|+|+|++++||+||+| .|...|+||+||+||.|+.|.|++|+++ .+...+..+++.++..++.++ ....
T Consensus 93 ~Gidi~~v~~Vi~~~~p--------~~~~~~~qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLP--------DRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp CSSSCCCBSEEEESSCC--------SSHHHHHHHHTTBCCCC--BEEEEEECG-GGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred cCCCCccCcEEEECCCC--------cCHHHHHHHhcccCCCCCCCeEEEEEch-hHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 99999999999999999 7899999999999999999999999985 577888999999999998887 4444
Q ss_pred HH
Q 010762 491 DF 492 (502)
Q Consensus 491 ~~ 492 (502)
++
T Consensus 164 ei 165 (212)
T 3eaq_A 164 EV 165 (212)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=6.2e-26 Score=212.32 Aligned_cols=159 Identities=31% Similarity=0.504 Sum_probs=135.2
Q ss_pred ceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 322 VKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 322 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
+.++++.+.. ..|...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 4566666665 45777777755443 37899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCc
Q 010762 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 481 (502)
Q Consensus 402 ~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~ 481 (502)
+|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.|++|+++ .+...+..+++.++..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p--------~s~~~y~Qr~GRagR~g~~G~~i~l~~~-~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMP--------DRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRR 150 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCC--------SSTTHHHHHHTCCC-----CEEEEEECS-STHHHHHHHHHHHTCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCC--------CCHHHHHHHccCcCcCCCCceEEEEeCh-HHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999 6889999999999999999999999985 5777889999999999
Q ss_pred ccccc-CCHHHH
Q 010762 482 VTEVR-NSDEDF 492 (502)
Q Consensus 482 ~~~~~-~~~~~~ 492 (502)
++.++ ....++
T Consensus 151 ~~~~~~~~~~ei 162 (300)
T 3i32_A 151 FKRVNPPTPEEV 162 (300)
T ss_dssp CEECCCCCHHHH
T ss_pred ceEeCCCCHHHH
Confidence 98887 334333
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=5.8e-26 Score=236.27 Aligned_cols=218 Identities=18% Similarity=0.206 Sum_probs=151.4
Q ss_pred eCchHHHHHHHcCccCCCceEEEEEeCchhhhcc-cCCHHHHHHHHHHh-------hh------------cCCCeeEEEE
Q 010762 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE-AGFRDDSLRIMKDI-------ER------------SSGHCQVLLF 288 (502)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~-~~~~~~~~~i~~~l-------~~------------~~~~~q~v~~ 288 (502)
+||++|++++... .+||+||+|++... .++..........+ +. .....|+++|
T Consensus 320 ~tpg~LlDyl~~~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPDD-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCSS-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcccC-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 6788888776432 37999999998742 11111111111100 00 0125689999
Q ss_pred eecCChhHHHHHHHHhcCCceeeecccccccccceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHH
Q 010762 289 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHK 368 (502)
Q Consensus 289 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~ 368 (502)
|||++...... ................. . +.+.....+...+...+......+.++||||+|+..++.++.
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 463 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPTGLLDP-L----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTD 463 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTTCCCCC-E----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeecccCCCCC-e----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 99987643221 11111111111111111 0 111122234444545566655567899999999999999999
Q ss_pred HHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcc
Q 010762 369 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 448 (502)
Q Consensus 369 ~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR 448 (502)
.|...|+.+..+||++++.+|..+++.|+.|...|||||+++++|+|+|++++||++|.+..+. |.|...|+||+||
T Consensus 464 ~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~---p~s~~~~iQr~GR 540 (661)
T 2d7d_A 464 YLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGF---LRSERSLIQTIGR 540 (661)
T ss_dssp HHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTT---TTSHHHHHHHHHT
T ss_pred HHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccC---CCCHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999832211 1789999999999
Q ss_pred cccCCCcceEEEEeeCCc
Q 010762 449 AGRFGRKGVVFNLLMDGD 466 (502)
Q Consensus 449 ~~R~g~~g~~~~~~~~~~ 466 (502)
+||. ..|.|++|+.+.+
T Consensus 541 agR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 541 AARN-AEGRVIMYADKIT 557 (661)
T ss_dssp TTTS-TTCEEEEECSSCC
T ss_pred ccCC-CCCEEEEEEeCCC
Confidence 9998 6899999987653
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=4e-27 Score=203.49 Aligned_cols=155 Identities=29% Similarity=0.524 Sum_probs=134.9
Q ss_pred cceEEEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC
Q 010762 321 SVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400 (502)
Q Consensus 321 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~ 400 (502)
.+.+.+..++....|...+...+.. ...+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 3455666665545676666664433 25679999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCC
Q 010762 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI 480 (502)
Q Consensus 401 ~~iLv~T~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~ 480 (502)
.+|||||+++++|+|+|++++||+||+| .|+..|+||+||+||.|+.|.+++|+.+ .+...+..+++.++.
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMP--------RSGDTYLHRIGRTARAGRKGTAISLVEA-HDHLLLGKVGRYIEE 151 (170)
Confidence 9999999999999999999999999999 6788899999999999999999999875 466788899999988
Q ss_pred cccccc
Q 010762 481 KVTEVR 486 (502)
Q Consensus 481 ~~~~~~ 486 (502)
.++...
T Consensus 152 ~~~~~~ 157 (170)
T 2yjt_D 152 PIKARV 157 (170)
Confidence 887664
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=1.2e-23 Score=214.79 Aligned_cols=316 Identities=14% Similarity=0.123 Sum_probs=171.8
Q ss_pred CCCCCCcHHHHhhhhh----hcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 119 MKFQKPSKIQAISLPM----ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~----il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
.|| .|+|+|..++.. +..| +++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~--~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHG--KTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 467 799999998654 4566 899999999999999999999853 568999999999999999888764
Q ss_pred hcccCceeeEeecCCC--------CCc--------------------------c-----------cccCCCCCCCeEEEe
Q 010762 195 GKHTGITSECAVPTDS--------TNY--------------------------V-----------PISKRPPVTAQVVIG 229 (502)
Q Consensus 195 ~~~~~~~~~~~~~~~~--------~~~--------------------------~-----------~~~~~~~~~~~Ilv~ 229 (502)
++++..+.+... ... . ...+.....++|+|+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 222222211110 000 0 001122345799999
Q ss_pred CchHHHHHHHcCcc-------CCCceEEEEEeCchhhhcccCC------HHH----------------------------
Q 010762 230 TPGTIKKWMSAKKL-------GFSRLKILVYDEADHMLDEAGF------RDD---------------------------- 268 (502)
Q Consensus 230 Tp~~l~~~l~~~~~-------~~~~~~~lVlDEah~l~~~~~~------~~~---------------------------- 268 (502)
|+..|.+......+ .+....++||||||.+.+...+ ...
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~ 230 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINL 230 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 99999875543222 2467889999999998431000 000
Q ss_pred ------------------------------HHHHHHHhhh--------------------------------cCC-----
Q 010762 269 ------------------------------SLRIMKDIER--------------------------------SSG----- 281 (502)
Q Consensus 269 ------------------------------~~~i~~~l~~--------------------------------~~~----- 281 (502)
+..++..+.. ..|
T Consensus 231 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~ 310 (540)
T 2vl7_A 231 LIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQ 310 (540)
T ss_dssp HHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHH
T ss_pred HHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHH
Confidence 0000000000 000
Q ss_pred --------CeeEEEEeecCChhHHHHHHHHhcCCceeeecccccccccceEEEEe--cC--ChH--HHHHHHHHHHHHhc
Q 010762 282 --------HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY--CP--DEL--AKVMVIRDRIFELG 347 (502)
Q Consensus 282 --------~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~--~k~~~l~~~l~~~~ 347 (502)
...+|++|||+++... +...+ ..... ... ...+.+.. ++ ... .....+...+....
T Consensus 311 ~l~~~~~~~~~~IltSATL~p~~~-----~~~~f-~~~~~---~~~-g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~ 380 (540)
T 2vl7_A 311 LIEDALNVKTFKVLMSGTLPESLT-----LTNSY-KIVVN---ESY-GRGEYYYCPNVTSELRKRNSNIPIYSILLKRIY 380 (540)
T ss_dssp HHHHHTCCSSCEEEEESSCCTTCC-----CTTEE-EEECC---CC--CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCccCCeEEEcccCCCCcc-----cchhc-CCchh---hee-cCCcceeccccCCCcccccCHHHHHHHHHHHHH
Confidence 0113777777765200 00000 00000 000 01111110 11 111 01123333333332
Q ss_pred -ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEE--EcCccccCCCCCC----CC
Q 010762 348 -EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI--STDVLARGFDQQQ----VN 420 (502)
Q Consensus 348 -~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv--~T~~~~~Gldi~~----v~ 420 (502)
...+++|||++|...++.++..|.. .. ...++.. ..|..+++.|+.+. .||+ +|+.+++|||+|+ ++
T Consensus 381 ~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~ 454 (540)
T 2vl7_A 381 ENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFE 454 (540)
T ss_dssp HTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEE
T ss_pred HhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccccc
Confidence 2467899999999999999988865 33 3445543 46888999999865 6777 8899999999997 89
Q ss_pred EEEEecCCCCCCCC-C-----------CCC----------ccchhhhhcccccCCCcceEEEEee
Q 010762 421 LIVNYDPPVKHGKH-L-----------EPD----------CEVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 421 ~VI~~~~p~~~~~~-~-----------~~s----------~~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
+||++++|+..... + ..+ +..+.|.+||+.|...+..+++++.
T Consensus 455 ~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 455 SLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp EEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 99999999755421 0 000 1334699999999865555555553
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=3e-22 Score=205.29 Aligned_cols=324 Identities=14% Similarity=0.078 Sum_probs=200.6
Q ss_pred CCcHHHHhhhhhh----cCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 123 KPSKIQAISLPMI----LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 123 ~p~~~Q~~~i~~i----l~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.|+|.|...+..+ ..| +++++.||||+|||++|++|++. .+++++|++||++|+.|+.+.+..+....
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~ 74 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKR 74 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc
Confidence 5899999877654 456 99999999999999999999997 35689999999999999999999887666
Q ss_pred CceeeEeecCCCCCcc---------------ccc----------------------------------CCCCCCCeEEEe
Q 010762 199 GITSECAVPTDSTNYV---------------PIS----------------------------------KRPPVTAQVVIG 229 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~---------------~~~----------------------------------~~~~~~~~Ilv~ 229 (502)
++++..+.|....-.. ..+ +.....++|+|+
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 6666554432110000 000 001125799999
Q ss_pred CchHHHHHHHcCccCC-CceEEEEEeCchhhhcccC--------------------------------------------
Q 010762 230 TPGTIKKWMSAKKLGF-SRLKILVYDEADHMLDEAG-------------------------------------------- 264 (502)
Q Consensus 230 Tp~~l~~~l~~~~~~~-~~~~~lVlDEah~l~~~~~-------------------------------------------- 264 (502)
||+.|.+......+.+ ....+|||||||.|.+ ..
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999988765544333 4678999999998764 00
Q ss_pred ----------CHHHHHHHH----------------------------HHh-------------------------hhcCC
Q 010762 265 ----------FRDDSLRIM----------------------------KDI-------------------------ERSSG 281 (502)
Q Consensus 265 ----------~~~~~~~i~----------------------------~~l-------------------------~~~~~ 281 (502)
+.+.+..+. ..+ .....
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 011111111 000 00011
Q ss_pred C-eeEEEEeecCChhHHHHHHHHhcCC-ceee---ecccccccccceEEEEe--cCC--h---HHHHHHHHHHHHHhcc-
Q 010762 282 H-CQVLLFSATFNETVKNFVTRIVKDY-NQLF---VKKEELSLESVKQYKVY--CPD--E---LAKVMVIRDRIFELGE- 348 (502)
Q Consensus 282 ~-~q~v~~SAT~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~--~~~--~---~~k~~~l~~~l~~~~~- 348 (502)
. ..+|++|||+.+ . ..+...+.-. .... ...-..+...-...++. .+. . ......+...+.....
T Consensus 314 ~~~svIltSaTL~~-~-~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 314 NELSIILMSGTLPP-R-EYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp TTCEEEEEESSCCC-H-HHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEeeCCCc-H-HHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 2 688999999986 3 3333333332 1110 00001111111111211 111 1 1123334444444332
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEc--CccccCCCCC-----CCCE
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST--DVLARGFDQQ-----QVNL 421 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T--~~~~~Gldi~-----~v~~ 421 (502)
..+++|||++|....+.++. ..+..+..-..+++ +...++.|+.....||++| ..+++|||+| .++.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 46789999999999999887 34555655555555 4556777854445899998 6999999999 3788
Q ss_pred EEEecCCCCCCCC--------C----CC-Cc---------cchhhhhcccccCCCcceEEEEee
Q 010762 422 IVNYDPPVKHGKH--------L----EP-DC---------EVYLHRIGRAGRFGRKGVVFNLLM 463 (502)
Q Consensus 422 VI~~~~p~~~~~~--------~----~~-s~---------~~y~qr~GR~~R~g~~g~~~~~~~ 463 (502)
||..++|+...++ + .. .. ....|.+||+-|...+..+++++.
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 529 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLD 529 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEES
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEee
Confidence 9999999866532 1 11 11 112589999999876666665664
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=188.96 Aligned_cols=167 Identities=14% Similarity=0.093 Sum_probs=114.3
Q ss_pred CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCC---CCCCeEEEecCcHHHHHH-HHHHHHHh
Q 010762 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTRELAIQ-NLEVLRKM 194 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~---~~~~~~lil~Pt~~La~q-~~~~~~~~ 194 (502)
.....|+|+|.++++.++.+ +++++.+|||+|||++|+++++..+... ..+.++||+||+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEG--KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcC--CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45567999999999999998 9999999999999999999998765321 235689999999999999 77888887
Q ss_pred hcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCc------cCCCceEEEEEeCchhhhcccCCHHH
Q 010762 195 GKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK------LGFSRLKILVYDEADHMLDEAGFRDD 268 (502)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~------~~~~~~~~lVlDEah~l~~~~~~~~~ 268 (502)
... ++.+....++...... .......++|+|+||++|..++.... ..+.++++||+||||++... ++...
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~-~~~~~ 182 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKIS--FPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE-AVYNN 182 (216)
T ss_dssp HTT-TSCEEECCC---CCCC--HHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHH
T ss_pred hcc-CceEEEEeCCcccchh--HHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC-CcHHH
Confidence 654 4555555444322210 00111247899999999999887643 55788999999999999864 44443
Q ss_pred H-HHHHHHh-hhc---------CCCeeEEEEeec
Q 010762 269 S-LRIMKDI-ERS---------SGHCQVLLFSAT 291 (502)
Q Consensus 269 ~-~~i~~~l-~~~---------~~~~q~v~~SAT 291 (502)
+ ..++... ... .+..+++++|||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3 2322221 111 146799999998
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.8e-22 Score=181.96 Aligned_cols=159 Identities=20% Similarity=0.226 Sum_probs=115.9
Q ss_pred CCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC--CCCeEEEecCcHHHHHHHHHHHHHhhc-cc
Q 010762 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGK-HT 198 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~-~~ 198 (502)
..++++|..+++.+..| ++++++|+||||||+++.++++..+.... ...++++++|+++|+.|+.+.+..... ..
T Consensus 60 ~p~~~~q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 60 LPVKKFESEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp SGGGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred CChHHHHHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 34789999999999999 99999999999999998888887654322 345899999999999999988876543 22
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhh-hcccCCHHHHHHHHHHhh
Q 010762 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM-LDEAGFRDDSLRIMKDIE 277 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l-~~~~~~~~~~~~i~~~l~ 277 (502)
+..+...... ........++|+|+||++|.+++.. .+.++++||+||||++ ++ .+|.. ..++.+.
T Consensus 138 ~~~~g~~~~~-------~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~-~~~~~---~~l~~i~ 203 (235)
T 3llm_A 138 GKSCGYSVRF-------ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDIN-TDFLL---VVLRDVV 203 (235)
T ss_dssp TSSEEEEETT-------EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHH-HHHHH---HHHHHHH
T ss_pred CceEEEeech-------hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcc-hHHHH---HHHHHHH
Confidence 2222221111 1112224589999999999999876 4889999999999986 43 34442 2223333
Q ss_pred hcCCCeeEEEEeecCChhH
Q 010762 278 RSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 278 ~~~~~~q~v~~SAT~~~~~ 296 (502)
...++.|+++||||++...
T Consensus 204 ~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 204 QAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHCTTSEEEEEECSSCCHH
T ss_pred hhCCCCeEEEEecCCCHHH
Confidence 3334789999999999776
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=4.9e-22 Score=186.60 Aligned_cols=154 Identities=18% Similarity=0.118 Sum_probs=117.2
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCcee
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (502)
.|+|+|.++++.++.+ ++.++++|||+|||++++.++...+.. ...++||++|+++|+.||.+.+.+++......+
T Consensus 113 ~l~~~Q~~ai~~~l~~--~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN--RRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHH--SEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhc--CCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 7999999999999987 788999999999999998888766532 234899999999999999999999876555555
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC
Q 010762 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~ 282 (502)
..+.++..... .....++|+|+||+++... ....+.++++||+||||++... .+..++..+.. .
T Consensus 189 ~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~-----~~~~il~~~~~---~ 252 (282)
T 1rif_A 189 KKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK-----SISSIISGLNN---C 252 (282)
T ss_dssp EECSTTCSSTT-----CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHH-----HHHHHTTTCTT---C
T ss_pred EEEeCCCcchh-----hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcc-----cHHHHHHHhhc---C
Confidence 55555443221 2234579999999987543 2234678999999999998752 34444444433 6
Q ss_pred eeEEEEeecCChhH
Q 010762 283 CQVLLFSATFNETV 296 (502)
Q Consensus 283 ~q~v~~SAT~~~~~ 296 (502)
.+++++|||++...
T Consensus 253 ~~~l~lSATp~~~~ 266 (282)
T 1rif_A 253 MFKFGLSGSLRDGK 266 (282)
T ss_dssp CEEEEECSSCCTTS
T ss_pred CeEEEEeCCCCCcc
Confidence 89999999998553
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.82 E-value=2.3e-19 Score=185.11 Aligned_cols=140 Identities=11% Similarity=0.140 Sum_probs=89.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEc--CccccCCCCCC--CCEEEE
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST--DVLARGFDQQQ--VNLIVN 424 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T--~~~~~Gldi~~--v~~VI~ 424 (502)
..+++|||++|....+.++..|.. +... ...+++...|..++++|+ +...||+++ ..+++|||+|+ .+.||.
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 467899999999999999988862 2222 555666678999999999 888899997 48999999995 789999
Q ss_pred ecCCCCCCCCC------------CC---------CccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCccc
Q 010762 425 YDPPVKHGKHL------------EP---------DCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (502)
Q Consensus 425 ~~~p~~~~~~~------------~~---------s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~ 483 (502)
.++|+...+++ .. .+....|.+||+-|...+..+++++.. + + +.+.+.+.. +.
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~-R---~-~~~~~~LP~-~~ 596 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK-R---A-GQFRKFIPD-MK 596 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG-G---G-GGGGGGSTT-CE
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc-c---h-HHHHHhCCc-hh
Confidence 99998654320 00 112236999999998766556656642 1 2 333444433 33
Q ss_pred cccCCHHHHHHHHHH
Q 010762 484 EVRNSDEDFKAALKA 498 (502)
Q Consensus 484 ~~~~~~~~~~~~~~~ 498 (502)
+-...++++...+.+
T Consensus 597 ~~~~~~~~~~~f~~~ 611 (620)
T 4a15_A 597 KTSDPASDIYNFFIS 611 (620)
T ss_dssp EESCHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHhC
Confidence 333446677666654
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=7.2e-19 Score=162.56 Aligned_cols=127 Identities=19% Similarity=0.267 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcC-CCe-EEEEc
Q 010762 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFKDG-LTQ-VLIST 407 (502)
Q Consensus 331 ~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~~-~~~-iLv~T 407 (502)
....|+..+...+......+.++||||++...+..+...|... |+.+..+||++++.+|..+++.|+++ ... +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456888888877776667899999999999999999999884 99999999999999999999999998 666 78999
Q ss_pred CccccCCCCCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceE--EEEeeCC
Q 010762 408 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV--FNLLMDG 465 (502)
Q Consensus 408 ~~~~~Gldi~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~--~~~~~~~ 465 (502)
+++++|+|++++++||+||+|| ++..|.||+||++|.|+.+.+ +.|++.+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~w--------np~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWW--------NPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCS--------CTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCC--------ChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999995 577799999999999987654 6666654
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=6.7e-19 Score=160.09 Aligned_cols=138 Identities=21% Similarity=0.131 Sum_probs=104.8
Q ss_pred CCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCce
Q 010762 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (502)
..|+++|..+++.++.+ +++++++|||+|||++++.++... +.+++|++|+++|+.||.+.+.++ ++.
T Consensus 92 ~~l~~~Q~~ai~~~~~~--~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~ 159 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVD--KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (237)
T ss_dssp CCCCHHHHHHHHHHTTT--SEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGG
T ss_pred CCcCHHHHHHHHHHHhC--CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCC
Confidence 36999999999999988 789999999999999988887753 457999999999999999998874 444
Q ss_pred -eeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcC
Q 010762 202 -SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (502)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~ 280 (502)
+..+.++.. ...+|+|+||+.+...... ....+++||+||||++... .|. .++..+
T Consensus 160 ~v~~~~g~~~-----------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~-~~~----~i~~~~---- 216 (237)
T 2fz4_A 160 YVGEFSGRIK-----------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYV----QIAQMS---- 216 (237)
T ss_dssp GEEEESSSCB-----------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT-THH----HHHHTC----
T ss_pred eEEEEeCCCC-----------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCCh-HHH----HHHHhc----
Confidence 433333221 1368999999998766542 1245889999999998763 332 333333
Q ss_pred CCeeEEEEeecCCh
Q 010762 281 GHCQVLLFSATFNE 294 (502)
Q Consensus 281 ~~~q~v~~SAT~~~ 294 (502)
+..+++++|||++.
T Consensus 217 ~~~~~l~LSATp~r 230 (237)
T 2fz4_A 217 IAPFRLGLTATFER 230 (237)
T ss_dssp CCSEEEEEEESCC-
T ss_pred cCCEEEEEecCCCC
Confidence 25688999999874
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.94 E-value=5.8e-09 Score=107.55 Aligned_cols=146 Identities=21% Similarity=0.252 Sum_probs=89.1
Q ss_pred cHHHHhhhhhhcCCCCccEEEECcCCCcch--hHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCcee
Q 010762 125 SKIQAISLPMILTPPYRNLIAQARNGSGKT--TCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (502)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKT--l~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (502)
+++|+.+++.++.+ +.+++.|++||||| ++++++.+..+.. ..+.++++++||..+|.++.+.+...+...++..
T Consensus 151 ~~~Q~~Ai~~~l~~--~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTR--RISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTB--SEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 78999999999988 99999999999999 6677777765532 2456899999999999999988877665544321
Q ss_pred eEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCC
Q 010762 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (502)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~ 282 (502)
..... ........ ..++-.+|+.. . +.........+++||+|||+ |++ ...+..++..++. .
T Consensus 228 ~~~~~-~~~~~~Ti-------h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~----~~~~~~Ll~~l~~---~ 289 (608)
T 1w36_D 228 EQKKR-IPEDASTL-------HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID----LPMMSRLIDALPD---H 289 (608)
T ss_dssp CCCCS-CSCCCBTT-------TSCC-------------CTTSCCSCSEEEECSGG-GCB----HHHHHHHHHTCCT---T
T ss_pred HHHhc-cchhhhhh-------HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC----HHHHHHHHHhCCC---C
Confidence 11100 00000000 01222233321 1 11111122378899999999 443 2445666666543 6
Q ss_pred eeEEEEeec
Q 010762 283 CQVLLFSAT 291 (502)
Q Consensus 283 ~q~v~~SAT 291 (502)
.|++++.=.
T Consensus 290 ~~liLvGD~ 298 (608)
T 1w36_D 290 ARVIFLGDR 298 (608)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEcch
Confidence 788887543
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.29 E-value=1.3e-05 Score=83.80 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=54.0
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
.+++-|.+++... + ..++|.|+.|||||.+.+--+...+.. .....++|++++|+..+.++.+.+..+.+
T Consensus 9 ~Ln~~Q~~av~~~--~--~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVAAP--R--SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHTCC--S--SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHhCC--C--CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 5889999999732 3 679999999999999855444444433 22345899999999999999999887643
No 96
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.10 E-value=4.9e-05 Score=70.22 Aligned_cols=131 Identities=15% Similarity=0.074 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccc
Q 010762 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (502)
Q Consensus 332 ~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~ 411 (502)
...|+..+..++....+.+.++|||++.....+.+..+|...++....+.|.....++. . .+....+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCC
Confidence 46788888888888888889999999999999999999999999999999986543221 1 244555545466555
Q ss_pred cCCC-----CCCCCEEEEecCCCCCCCCCCCCccchhhhhcccccCC----CcceEEEEeeCCccHHHHHHH
Q 010762 412 RGFD-----QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG----RKGVVFNLLMDGDDMIIMEKI 474 (502)
Q Consensus 412 ~Gld-----i~~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g----~~g~~~~~~~~~~~~~~~~~i 474 (502)
-|+| ...++.||.||.-|++.. ..+|++-|+.|.| +.-.++.|++.+.-....-.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~-------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQ-------KDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTS-------HHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCC-------hHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 5665 678999999999985422 2578787777763 355788898866533333333
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.07 E-value=5.9e-06 Score=82.39 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCCCCCcHHHHhhhhhhcCC---CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHH
Q 010762 119 MKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (502)
Q Consensus 119 ~g~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (502)
+.|..+++-|+.++..++.. ....+++.|+.|||||.. +..++..+.... ...+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG-ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC-CceEEEecCcHHHHHHHHhhh
Confidence 67888999999999876532 114899999999999976 344444443222 147899999998887766544
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.06 E-value=9.5e-06 Score=82.73 Aligned_cols=63 Identities=22% Similarity=0.153 Sum_probs=49.4
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (502)
.+++.|+.++..++.+ +.+++.|++|+|||.. +..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~--~~~~I~G~pGTGKTt~-i~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGH--RLVVLTGGPGTGKSTT-TKAVADLAES--LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTC--SEEEEECCTTSCHHHH-HHHHHHHHHH--TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC--CEEEEEcCCCCCHHHH-HHHHHHHHHh--cCCeEEEecCcHHHHHHhHhh
Confidence 4789999999999987 8999999999999976 3334433322 356799999999888876654
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.96 E-value=2.4e-05 Score=81.06 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=54.7
Q ss_pred CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 121 ~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
+..+++.|..|+..++.+ .-++|+||+|+|||.+.. .++..+... .+.++++++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~--~~~li~GppGTGKT~~~~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQR--PLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTC--SEEEEECCTTSCHHHHHH-HHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcC--CCeEEECCCCCCHHHHHH-HHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 345789999999999876 789999999999998743 333333221 4568999999999999998887654
No 100
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.95 E-value=4.6e-06 Score=86.95 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
.+++-|.+|+..++..+ .-.+|+||+|||||.+..-.+.+.+. .+.++|+++||...+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~-~~~lI~GPPGTGKT~ti~~~I~~l~~---~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQK-ELAIIHGPPGTGKTTTVVEIILQAVK---QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCS-SEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCC-CceEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 46789999999988651 35799999999999885444444443 3568999999999999999887654
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=3.5e-05 Score=81.61 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
..+++.|..|+..++.+ .-++|.||+|||||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~--~~~lI~GppGTGKT~~i~~-~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQR--PLSLIQGPPGTGKTVTSAT-IVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTC--SEEEEECSTTSSHHHHHHH-HHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHH-HHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45689999999999876 7789999999999987433 33333211 3458999999999999999988765
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.21 E-value=0.0025 Score=61.05 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=55.2
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhccc
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (502)
.++|+|...+..+... +-+++..+-+.|||.+....++..+.. ..+..++++.|++..|..+.+.+..+....
T Consensus 163 ~L~p~Qk~il~~l~~~--R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSK--RMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHS--SEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccC--cEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 5899999998876433 678999999999998765555543322 245589999999999998888777766543
No 103
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.003 Score=58.88 Aligned_cols=32 Identities=6% Similarity=0.109 Sum_probs=22.6
Q ss_pred hhhcCCCCccEEEECcCCCcchhHhHHHHHhcc
Q 010762 133 PMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
+.+..+.+.++++.||+|+|||.+. -.++..+
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v-~~v~~~L 69 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLV-NDVMDEL 69 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHH-HHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 4444455689999999999999873 3344444
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.93 E-value=0.0051 Score=63.12 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=55.9
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccC
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTG 199 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 199 (502)
.++|+|...+..+... +.+++..+-|+|||.+....++..+... .+..++++.|++..|..+...++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~--r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSK--RMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHC--SEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccc--cEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 4799999988876434 7899999999999987654444333322 345899999999999999988887765543
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.90 E-value=0.0022 Score=54.71 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+.+++.||+|+|||..
T Consensus 39 ~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHL 54 (180)
T ss_dssp CEEEECCSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 8899999999999986
No 106
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.85 E-value=0.0017 Score=68.75 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=54.1
Q ss_pred CCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHh
Q 010762 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (502)
Q Consensus 122 ~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (502)
..+++.|..|+..++.+ .-++|.||+|+|||.+. ..++..+... .+.++++++||...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~--~~~lI~GppGTGKT~ti-~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQR--PLSLIQGPPGTGKTVTS-ATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTS--SEEEEECCTTSCHHHHH-HHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccC--CeEEEEcCCCCCHHHHH-HHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 34688999999999887 78999999999999874 3344443321 4568999999999999998887654
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.84 E-value=0.0013 Score=63.91 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=54.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
+-.++.|+.|+|||... .-.+ .. ...+|++||++++..+.+.+.+.+ . .
T Consensus 162 ~v~~I~G~aGsGKTt~I-~~~~---~~----~~~lVlTpT~~aa~~l~~kl~~~~----~--------~----------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI-LSRV---NF----EEDLILVPGRQAAEMIRRRANASG----I--------I----------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHH-HHHC---CT----TTCEEEESCHHHHHHHHHHHTTTS----C--------C-----------
T ss_pred cEEEEEcCCCCCHHHHH-HHHh---cc----CCeEEEeCCHHHHHHHHHHhhhcC----c--------c-----------
Confidence 56789999999999963 2222 11 357999999999998887764321 0 0
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhh
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l 259 (502)
.....-|.|.++++- ..........++||+|||-.+
T Consensus 211 -~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp -CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS
T ss_pred -ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC
Confidence 001234678776543 222222234789999999854
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.0083 Score=52.78 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=52.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (502)
.-+++.|++|+|||.+.+- ++.++. ..+.+++++.|...- . . ...+....++
T Consensus 13 ~i~litG~mGsGKTT~ll~-~~~r~~--~~g~kVli~~~~~d~--r-~--~~~i~srlG~-------------------- 64 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR-RLHRLE--YADVKYLVFKPKIDT--R-S--IRNIQSRTGT-------------------- 64 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH-HHHHHH--HTTCCEEEEEECCCG--G-G--CSSCCCCCCC--------------------
T ss_pred EEEEEECCCCCcHHHHHHH-HHHHHH--hcCCEEEEEEeccCc--h-H--HHHHHHhcCC--------------------
Confidence 7889999999999997443 333332 234578888776421 0 0 0000100000
Q ss_pred CCCCeEEEeCchHHHHHHHcCccCCCceEEEEEeCchhhh
Q 010762 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 260 (502)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVlDEah~l~ 260 (502)
....+.+.+...++..+.... .-..+++||+||++.+.
T Consensus 65 -~~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 65 -SLPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -SSCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -CccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 011344567777877776532 23457899999999654
No 109
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.71 E-value=0.0021 Score=67.24 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhhc
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (502)
.++|-|++++... + ..++|.|..|||||.+.+--+...+.. .....++|+|+.|+..+.++.+.+....+
T Consensus 2 ~L~~~Q~~av~~~--~--~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--T--GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--S--SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--C--CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999753 3 689999999999999855444444332 22445899999999999999999887643
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.57 E-value=0.0035 Score=53.78 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=27.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
+-.++.|++|||||.+.+- ++.++. ..+.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~-~a~r~~--~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIR-RIRRAK--IAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHH-HHHHHH--HTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHH-HHHHHH--HCCCEEEEEEecc
Confidence 7789999999999987443 343332 3456899998873
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.56 E-value=0.016 Score=54.86 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=24.8
Q ss_pred CcHHHHhhhhhhc----CCC-CccEEEECcCCCcchhHhHH
Q 010762 124 PSKIQAISLPMIL----TPP-YRNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 124 p~~~Q~~~i~~il----~~~-~~~~lv~a~TGsGKTl~~l~ 159 (502)
+.|+|..++..+. .|. ...+++.||.|+|||.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 3577777765543 332 24599999999999987443
No 112
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.46 E-value=0.013 Score=49.98 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=25.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
+-.++.|++|+|||...+- ++.++. ..+.+++++.|..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~-~~~~~~--~~g~~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLS-FVEIYK--LGKKKVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHH-HHHHHH--HTTCEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHH-HHHHHH--HCCCeEEEEeecc
Confidence 6788999999999997433 333322 1345788888874
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.45 E-value=0.0024 Score=52.47 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=25.4
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecC
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATF 292 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~ 292 (502)
.+.++||+||++.+.... ...+..++..+... ...++++|...
T Consensus 82 ~~~~lLilDE~~~~~~~~--~~~l~~li~~~~~~--g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE--QALLFSIFNRFRNS--GKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTCCCSHH--HHHHHHHHHHHHHH--TCCEEEEEESS
T ss_pred hCCCEEEEeCccccChHH--HHHHHHHHHHHHHc--CCcEEEEECCC
Confidence 356789999999865421 45555666655442 22335555553
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.41 E-value=0.0037 Score=55.87 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=15.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.||+|+|||...
T Consensus 53 ~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 88999999999999853
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.39 E-value=0.01 Score=55.83 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||+|+|||..
T Consensus 38 ~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHL 53 (324)
T ss_dssp SSEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 7899999999999986
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.38 E-value=0.006 Score=52.90 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=27.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~ 182 (502)
+-.++.|+.|||||...+--+.... ..+.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~---~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQ---FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEeccC
Confidence 6677999999999988544443332 34568999998753
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.063 Score=46.83 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=14.3
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999985
No 118
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.17 E-value=0.0066 Score=67.87 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=55.3
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCC---CCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL---KAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~---~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
.+|+-|..+|..- + ++++|.|..|||||.+.+--++..+.... ...++|++++|+..|..+.+.+....
T Consensus 10 ~~t~eQ~~~i~~~--~--~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--G--QDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--S--SCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--C--CCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 4789999999754 4 89999999999999986655665555432 44589999999999999998887643
No 119
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.17 E-value=0.042 Score=53.09 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCCCCccCCCCCHHHHHHHHhhCCCCCCcHHH-HhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQ-AISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q-~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
....+|+++.=.....+.+...... +.. ...+..+ ....+.+++.||+|+|||..+
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~----~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVIL----PSLRPELFTGL-RAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHH----HHHCTTTSCGG-GCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHH----hccCHHHhccc-CCCCceEEEECCCCCCHHHHH
Confidence 3456788886667777766542100 000 0000011 112378999999999999863
No 120
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.08 E-value=0.03 Score=58.97 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=78.0
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
.+..+....|.......+......+.+++|.++++.-|...++.+.. .++.+..+||+++..+|...++.+.+|..
T Consensus 393 Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~ 472 (780)
T 1gm5_A 393 LLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI 472 (780)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 34445555665544433444444678999999999988888877654 37999999999999999999999999999
Q ss_pred eEEEEcCc-cccCCCCCCCCEEEEec
Q 010762 402 QVLISTDV-LARGFDQQQVNLIVNYD 426 (502)
Q Consensus 402 ~iLv~T~~-~~~Gldi~~v~~VI~~~ 426 (502)
.|+|+|.. +...+.+.++.+||.-.
T Consensus 473 ~IvVgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 473 DVVIGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp CEEEECTTHHHHCCCCSCCCEEEEES
T ss_pred CEEEECHHHHhhhhhccCCceEEecc
Confidence 99999964 45667888999988643
No 121
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0075 Score=58.64 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=38.5
Q ss_pred CCCCCccCCCCCHHHHHHHHhh--CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 97 TSATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~--~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..+|++++-.....+.|... +.+..|--++...++. .+.+++.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-----prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-----PKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-----CCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCeeEEECcCCCCHHHH
Confidence 3567899999888888877642 1233454455544431 27899999999999985
No 122
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.06 E-value=0.045 Score=51.36 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=27.2
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC-CccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~-~~~~lv~a~TGsGKTl~~ 157 (502)
+.+|+++--.....+.+... +-.+. ..-+++.+|+|+|||...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~----------------l~~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSI----------------TSKGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHH----------------HHTTCCCSEEEECSSTTSSHHHHH
T ss_pred CCCHHHHhCcHHHHHHHHHH----------------HHcCCCCeEEEeeCcCCCCHHHHH
Confidence 45677777777777666541 11221 134677778999999863
No 123
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.02 E-value=0.0088 Score=63.01 Aligned_cols=69 Identities=20% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCC-CCCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
.++|-|++++... + ..++|.|..|||||.+..--+...+.. .....++|+|+.|+..|.++.+.+..+.
T Consensus 11 ~Ln~~Q~~av~~~--~--g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--E--GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHCC--S--SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC--C--CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 5889999999753 3 679999999999999855444444432 2344589999999999999998887764
No 124
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.97 E-value=0.013 Score=54.73 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.++++.||+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999863
No 125
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.89 E-value=0.12 Score=46.62 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCccCCCCCHHHHHHHHhhC-CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 100 TTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~-g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+|+++.-...+.+.+.... .+..|..+....+ ...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~-----~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGA-----KVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------C-----CCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCC-----CCCceEEEECCCCCCHHHHH
Confidence 46777765566666654310 0111111111111 11378999999999999853
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.82 E-value=0.023 Score=55.93 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||+|+|||..
T Consensus 131 ~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_dssp CCEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999986
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.80 E-value=0.032 Score=53.65 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.9
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
+..+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 478999999999999863
No 128
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.018 Score=55.14 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=35.7
Q ss_pred CCCCccCCCCCHHHHHHHHhhC--CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
|..+|++++=.....+.|.... .+..|--++...++ ..+.+++.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~-----~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA-----QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC-----CCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC-----CCCceEEeCCCCCCHHHH
Confidence 4568999986677777665421 23344444444332 127899999999999985
No 129
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.78 E-value=0.021 Score=50.02 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=28.1
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
+-.++.|++|||||...+--+.... ..+.+++++-|..
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 7789999999999988554444333 3456789988875
No 130
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.71 E-value=0.052 Score=52.89 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=75.0
Q ss_pred EecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCeE
Q 010762 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (502)
Q Consensus 327 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~i 403 (502)
+..+....|.....-.+......+.++||.+|++.-+..+++.+.. .++.+..+||+.+..++...++.+..+...|
T Consensus 41 v~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~I 120 (414)
T 3oiy_A 41 MVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 120 (414)
T ss_dssp CCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSE
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCE
Confidence 3444555555533332333345778999999999999999999988 5889999999999999888899999998999
Q ss_pred EEEcCccc----cCCCCCCCCEEEEec
Q 010762 404 LISTDVLA----RGFDQQQVNLIVNYD 426 (502)
Q Consensus 404 Lv~T~~~~----~Gldi~~v~~VI~~~ 426 (502)
+|+|.-.- .-++...+++||.-.
T Consensus 121 iv~Tp~~l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 121 LVFSTQFVSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp EEEEHHHHHHCHHHHTTCCCSEEEESC
T ss_pred EEECHHHHHHHHHHhccccccEEEEeC
Confidence 99995321 125566888888543
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.70 E-value=0.07 Score=48.92 Aligned_cols=54 Identities=17% Similarity=0.350 Sum_probs=31.8
Q ss_pred CCCccCCCCCHHHHHHHHhhCC--CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMK--FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g--~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
..+|+++.-.....+.+..... ...+..++... +..+ +.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~--~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG---IEPP--KGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC---CCCC--SEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCC--CeEEEECCCCCcHHHHH
Confidence 4568888777777777765221 01111111111 1123 78999999999999863
No 132
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.65 E-value=0.096 Score=47.66 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.7
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
...+++.||+|+|||..+
T Consensus 64 ~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 378999999999999863
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.60 E-value=0.068 Score=50.10 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCC---CCccEEEECcCCCcchhHh
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~ 157 (502)
+..+|+++.-...+.+.+..... .|. ..|.++.+ ..+.+++.||+|+|||+..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~----~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI----LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH----HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH----HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34578888877888887765221 111 11222111 1367999999999999863
No 134
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.56 E-value=0.028 Score=57.44 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=44.6
Q ss_pred CCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHH
Q 010762 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (502)
.+|.-|.+++..++.-.....++.|+-|.|||.+..+.+-.. . ..++|..|+.+-+..+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~-----~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-A-----GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-S-----SCEEEECSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-H-----hCcEEECCCHHHHHHHHH
Confidence 688999999988876322568999999999997755544433 2 136899999887765444
No 135
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.55 E-value=0.15 Score=47.62 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCC---CCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~ 157 (502)
..+|++++=...+.+.|..... .|.+ .|.++.+ ..+.+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~----~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI----LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH----HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH----HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4578888877777777654110 0111 1222221 2378999999999999863
No 136
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.52 E-value=0.018 Score=49.00 Aligned_cols=38 Identities=16% Similarity=-0.075 Sum_probs=26.5
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt 180 (502)
++=.++.|++|||||.-.+-.+-+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEccc
Confidence 378899999999999664443333322 24578888887
No 137
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.49 E-value=0.038 Score=53.75 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=68.6
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCccccc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (502)
+..+++.|++|+|||.....-+ ..+.. .+.+++++. +.|.-+ .+.+..++...++.+... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA-~~l~~--~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~--~~~------- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA-YFYKK--RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGE--PNN------- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH-HHHHH--TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECC--TTC-------
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHH--cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeec--ccc-------
Confidence 3789999999999998643322 22222 345666655 334333 233444444333321110 000
Q ss_pred CCCCCCCeEEEeCchHHH-HHHHcCccCCCceEEEEEeCchhhh--cccCCHHHHHHHHHHhhhcCCCeeEEEEeecCCh
Q 010762 218 KRPPVTAQVVIGTPGTIK-KWMSAKKLGFSRLKILVYDEADHML--DEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNE 294 (502)
Q Consensus 218 ~~~~~~~~Ilv~Tp~~l~-~~l~~~~~~~~~~~~lVlDEah~l~--~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~ 294 (502)
..|..+. ..+.. .....+++||+|++-++. .+..+..++..+...+. +..-+++++|+...
T Consensus 162 -----------~dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~---pd~vlLVlDa~~gq 225 (433)
T 3kl4_A 162 -----------QNPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK---PDDVILVIDASIGQ 225 (433)
T ss_dssp -----------SCHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC---CSEEEEEEEGGGGG
T ss_pred -----------CCHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC---CcceEEEEeCccch
Confidence 1233222 22222 123468899999998754 32234445555555443 35667888888665
Q ss_pred hHHHHHHHH
Q 010762 295 TVKNFVTRI 303 (502)
Q Consensus 295 ~~~~~~~~~ 303 (502)
.....+..+
T Consensus 226 ~a~~~a~~f 234 (433)
T 3kl4_A 226 KAYDLASRF 234 (433)
T ss_dssp GGHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.42 E-value=0.12 Score=47.81 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCCccCCCCCHHHHHHHHhhCC--CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMK--FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g--~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
..+|+++.-...+.+.+..... ...|..+.... +-.+ +.+++.||+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~--~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPS--KGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCC--SEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC---CCCC--ceEEEECCCCcCHHHHH
Confidence 4578888766777766654110 11111111111 1123 78999999999999863
No 139
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.032 Score=54.31 Aligned_cols=54 Identities=19% Similarity=0.437 Sum_probs=35.7
Q ss_pred CCCCccCCCCCHHHHHHHHhhC--CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
|..+|++++=...+.+.|.... .+..|--++...++ ..+.+++.||+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~-----pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGID-----PPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC-----CCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC-----CCCceEeeCCCCCcHHHH
Confidence 4568999987788877776521 12233333333322 237899999999999985
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.2 Score=47.40 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
+.+|+++--...+.+.+.... + -.+...++++.||+|+|||...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~-~--------------~~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLS-D--------------QPRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTT-T--------------CTTCCCCEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHH-h--------------hCCCCCeEEEECCCCCCHHHHH
Confidence 456777766777777775411 0 1122234999999999999863
No 141
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.18 E-value=0.017 Score=50.00 Aligned_cols=39 Identities=15% Similarity=0.053 Sum_probs=26.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~ 182 (502)
.-.++.|+.|+|||...+- .+.++. ..+.+++|+.|...
T Consensus 29 ~I~vitG~M~sGKTT~Llr-~~~r~~--~~g~kvli~kp~~D 67 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIR-RLRRGI--YAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEEECTTSCHHHHHHH-HHHHHH--HTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHH--HcCCceEEEEeccC
Confidence 7789999999999986433 344433 23457899988753
No 142
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.085 Score=48.89 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 010762 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (502)
Q Consensus 245 ~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~S 289 (502)
....+++|+||||.|... ..+.+++.+...++...+++.+
T Consensus 80 ~~~~kvviIdead~lt~~-----a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-----AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-----HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-----HHHHHHHHHhCCCCCeEEEEEE
Confidence 356789999999998752 2455666666544455555444
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.07 E-value=0.094 Score=50.43 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=14.6
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999863
No 144
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.98 E-value=0.026 Score=45.79 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.++++.|++|+|||..
T Consensus 28 ~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 28 SPVFLTGEAGSPFETV 43 (143)
T ss_dssp SCEEEEEETTCCHHHH
T ss_pred CcEEEECCCCccHHHH
Confidence 7899999999999974
No 145
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.97 E-value=0.29 Score=43.96 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=29.5
Q ss_pred CCCccCCCCCHHHHHHHHhhCC-CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 99 ATTFEDLNLSPELLKGLYVEMK-FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
..+|+++.-...+.+.+..... +..|..++...+ ...+.+++.||+|+|||..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG-----KIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC----------CCCCEEEEECCTTSCHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCC-----CCCCeEEEECcCCCCHHHH
Confidence 4578888777777666653100 111111111000 1126799999999999985
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.97 E-value=0.16 Score=47.48 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
+.+|+++--....++.+... +..+....+++.||+|+|||...
T Consensus 21 p~~~~~~~g~~~~~~~l~~~----------------l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHY----------------VKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHH----------------HHHTCCCEEEEESCTTSSHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHH----------------HHcCCCCeEEEECcCCCCHHHHH
Confidence 34566665556666655431 11122246999999999999863
No 147
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.97 E-value=0.024 Score=58.79 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCcHHHHhhhhhhcCC---CCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcc
Q 010762 123 KPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (502)
Q Consensus 123 ~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (502)
.|+..|..+|..+..+ ..+..++.+-||||||++.. .++... +..+|||+|+..+|.|++..++.+...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a-~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVS-NLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH-----CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHH-HHHHHh-----CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 4888888888765432 11356788999999999743 233332 225899999999999999999999653
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.03 Score=54.50 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=34.8
Q ss_pred CCCCccCCCCCHHHHHHHHhh--CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~--~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|++++=.....+.|... +.+..|--++...++ ..+.+++.||+|+|||+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~-----~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-----PPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-----CCCEEEEESCTTSSHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC-----CCCeEEEECCCCCcHHHH
Confidence 456799998667776666542 122333333333332 137899999999999986
No 149
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.06 Score=52.23 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=34.4
Q ss_pred CCCCccCCCCCHHHHHHHHhh--CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~--~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|++.+=...+.+.|... +.+..|--++...++ ..+.+++.||+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~-----~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID-----PPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-----CCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC-----CCceEEEECCCCCCHHHH
Confidence 456899998667776666542 122233333333332 137799999999999985
No 150
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.85 E-value=0.048 Score=52.43 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=15.7
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999863
No 151
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.64 E-value=0.096 Score=57.62 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=76.7
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCe
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLTQ 402 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 402 (502)
.+..+....|.....-.+......+.++||.+|++.-|..+++.|.. .++.+..+||+++..+|...++.+..|...
T Consensus 97 lv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~ 176 (1104)
T 4ddu_A 97 TMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH 176 (1104)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Confidence 34445555565544443444445778999999999999999999988 567999999999998888899999999999
Q ss_pred EEEEcCccc-c---CCCCCCCCEEEEec
Q 010762 403 VLISTDVLA-R---GFDQQQVNLIVNYD 426 (502)
Q Consensus 403 iLv~T~~~~-~---Gldi~~v~~VI~~~ 426 (502)
|+|+|.-.- . -+++.++++||.-.
T Consensus 177 IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 177 ILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp EEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred EEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 999995321 1 14566889988643
No 152
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.044 Score=52.78 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=36.2
Q ss_pred CCCCCccCCCCCHHHHHHHHhh--CCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 97 TSATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~--~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..+|++++=...+.+.|... +.+..|--++...++. .+.+++.||+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-----prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-----PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-----CSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCCCceECCCCchHHHH
Confidence 3567899998666666666542 1233454444444331 27899999999999985
No 153
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.61 E-value=0.079 Score=55.66 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=35.6
Q ss_pred CCCCCccCCCCCHHHHHHHHhhCCC--CCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 97 TSATTFEDLNLSPELLKGLYVEMKF--QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 97 ~~~~~f~~~~l~~~l~~~l~~~~g~--~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+..+|++++...+..+.|....-+ ..|.-++...+ ...+.+++.||+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~-----~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-----TPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC-----CCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCC-----CCCceEEEecCCCCCchHHH
Confidence 3456899999888888888653222 22221111111 12377999999999999853
No 154
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.59 E-value=0.1 Score=44.94 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.2
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.||+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999863
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.46 E-value=0.46 Score=45.19 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999864
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.45 E-value=0.2 Score=47.87 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.8
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 378999999999999863
No 157
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.40 E-value=0.083 Score=49.11 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=15.5
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+++++.||+|+|||...
T Consensus 153 ~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 78999999999999863
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.39 E-value=0.68 Score=40.61 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||...
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999863
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.32 E-value=0.35 Score=44.85 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=28.0
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
+.+|+++--....++.+.... -.+....+++.||+|+|||...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l----------------~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYV----------------ERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTT----------------TTTCCCCEEEESSSSSSHHHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHH----------------hCCCCCeEEEECcCCcCHHHHH
Confidence 346777666677777665411 1122245999999999999863
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.29 E-value=0.13 Score=47.84 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.5
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.++++.||+|+|||...
T Consensus 43 ~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 35999999999999863
No 161
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.20 E-value=0.24 Score=45.52 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=31.5
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHH-hhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQA-ISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~-~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
+..+|+++.=.....+.+...... |... ..+..+. ...+.+++.||+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~----~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVIL----PSVRPELFTGLR-APAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHH----HHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHh----hhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHH
Confidence 345788877677777777542110 0000 0000111 12378999999999999863
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.96 E-value=0.53 Score=42.06 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=29.7
Q ss_pred CCCCccCCCCCHHHHHHHHhhC-CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~-g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|+++.-.......+..-. .+..+ ..+..+--.-.+.+++.||+|+|||..
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 4567888876666655554310 01111 112111101124599999999999985
No 163
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.92 E-value=0.28 Score=43.50 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=29.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
.-+++.|++|+|||...+-.+...+. .+..++++.-. ....++.+.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESS-SCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcc-CCHHHHHHHHHH
Confidence 78999999999999874433333322 24467776633 233455555443
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.89 E-value=0.11 Score=48.99 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=28.1
Q ss_pred CCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhc--CCCCccEEEECcCCCcchhHh
Q 010762 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMIL--TPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 100 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il--~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+|+++--....++.+.. .+.... ......+++.||+|+|||...
T Consensus 26 ~~~~~iiG~~~~~~~l~~-------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNV-------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSGGGCCSCHHHHHHHHH-------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHH-------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 467777666666666543 111111 111268999999999999863
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.83 E-value=0.4 Score=45.09 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=14.1
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
++++.||+|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999864
No 166
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.74 E-value=0.25 Score=48.00 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=66.2
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCccccc
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS 217 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (502)
...+++++++|+|||....--+ ..+.. .+.+++++. |.|.-+ .+.++.++...++.+... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA-~~l~~--~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~--~~~------- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA-RYFQK--RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGN--PQE------- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHT--TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECC--TTC-------
T ss_pred CeEEEEECcCCCCHHHHHHHHH-HHHHH--CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEec--CCC-------
Confidence 3789999999999998743322 22322 344666655 445433 334555555545432111 000
Q ss_pred CCCCCCCeEEEeCchHHH-HHHHcCccCCCceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhH
Q 010762 218 KRPPVTAQVVIGTPGTIK-KWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 296 (502)
Q Consensus 218 ~~~~~~~~Ilv~Tp~~l~-~~l~~~~~~~~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~ 296 (502)
..|..+. +.+.. .....++++|+|.+-++..+......+..+.... .+..-+++++||.....
T Consensus 165 -----------~dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~---~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 165 -----------KDAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI---HPHEVILVIDGTIGQQA 228 (443)
T ss_dssp -----------CCHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH---CCSEEEEEEEGGGGGGH
T ss_pred -----------CCHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhh---cCceEEEEEeCCCchhH
Confidence 1233222 22221 0113477899999865433211222233333333 23556788888866555
Q ss_pred HHHHHHH
Q 010762 297 KNFVTRI 303 (502)
Q Consensus 297 ~~~~~~~ 303 (502)
...+..+
T Consensus 229 ~~~a~~f 235 (443)
T 3dm5_A 229 YNQALAF 235 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 167
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.70 E-value=0.29 Score=54.12 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=77.2
Q ss_pred EEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCC
Q 010762 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGL 400 (502)
Q Consensus 325 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~ 400 (502)
..+..+....|..............+.+++|.|++..-+...++.+.. .++.+..+++..+..++...++.+..|.
T Consensus 627 ~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~ 706 (1151)
T 2eyq_A 627 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 706 (1151)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 445555666666554433344444677999999999999888887764 3678999999999999999999999999
Q ss_pred CeEEEEcC-ccccCCCCCCCCEEEE
Q 010762 401 TQVLISTD-VLARGFDQQQVNLIVN 424 (502)
Q Consensus 401 ~~iLv~T~-~~~~Gldi~~v~~VI~ 424 (502)
..|+|+|. .+...+.+.++.+||.
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCEEEECHHHHhCCccccccceEEE
Confidence 99999994 4556678888888775
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.70 E-value=0.17 Score=48.05 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=29.5
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcCC---CCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~---~~~~~lv~a~TGsGKTl~~ 157 (502)
..+|+++.-.....+.|..... .|. ..|.++.+ ..+.+++.||+|+|||+.+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~----~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVI----LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTH----HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH----HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 4567777655566666654110 010 11112111 1367999999999999863
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.51 E-value=0.23 Score=49.87 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=15.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.||+|+|||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999864
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.45 E-value=0.15 Score=48.16 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999863
No 171
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.26 E-value=0.87 Score=39.54 Aligned_cols=97 Identities=11% Similarity=0.185 Sum_probs=64.7
Q ss_pred EEecCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHH
Q 010762 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFK 397 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~ 397 (502)
.+..+....|.....-.+..... ...++||.|+++.-+..+++.+... ++.+..++|+.+...+.. .+.
T Consensus 55 li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~ 131 (220)
T 1t6n_A 55 LCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLK 131 (220)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHH
T ss_pred EEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHh
Confidence 34444555555443332333322 2348999999999999988887764 789999999988665543 345
Q ss_pred cCCCeEEEEcCc-----c-ccCCCCCCCCEEEEe
Q 010762 398 DGLTQVLISTDV-----L-ARGFDQQQVNLIVNY 425 (502)
Q Consensus 398 ~~~~~iLv~T~~-----~-~~Gldi~~v~~VI~~ 425 (502)
.+...|+|+|.- + ...+++..+++||.-
T Consensus 132 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 132 KNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 567789999942 1 234677788888853
No 172
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.10 E-value=0.17 Score=49.74 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCCCccCCCCCHHHHHHHHhhCCCCCCcHHHHhhhhhhcC---CCCccEEEECcCCCcchhHh
Q 010762 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT---PPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~---~~~~~~lv~a~TGsGKTl~~ 157 (502)
+..+|+++.=...+.+.|..... .|... |.++. ...+.+++.||+|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~----~p~~~---~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI----LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT----HHHHC---TTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH----HHhhC---HHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 45678888767777777754211 01110 11111 12378999999999999863
No 173
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.03 E-value=0.18 Score=50.01 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.||+|+|||+.+
T Consensus 239 ~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CcEEEECcCCCCHHHHH
Confidence 78999999999999863
No 174
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.62 E-value=0.24 Score=45.58 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.6
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
++.+++.|++|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 378999999999999863
No 175
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.62 E-value=1.3 Score=40.18 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=30.3
Q ss_pred CCCCccCCCCCHHHHHHHHhhC-CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~-g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|+++.-...+...+..-. .+..+ ..+..+--.-.+.+++.||+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4567888877777766654310 01111 111111001114599999999999985
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.60 E-value=0.33 Score=47.83 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=30.1
Q ss_pred CCCccCCCCCHHHHHHHHhhCC-CCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMK-FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
..+|+++.=..+..+.+..... +..|..++...+ ...+.+++.||+|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~-----~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA-----RMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC-----CCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC-----CCCCeEEEECCCCCCHHHHH
Confidence 4568887666666555543110 112222221111 11267999999999999863
No 177
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.38 E-value=0.68 Score=39.38 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=27.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
..+++...+|.|||.+++--++..+ ..+.+++|+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEE
Confidence 5789999999999999777666665 3456788884
No 178
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.90 E-value=2.5 Score=36.05 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=71.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----cc-cCCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LA-RGFDQQ 417 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~-~Gldi~ 417 (502)
...++||.++++.-+..+++.+... +..+..++|+.+....... + .+...|+|+|.- +. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3468999999999999888887653 6788999999876544322 2 356789999952 22 334677
Q ss_pred CCCEEEEecCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCc
Q 010762 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 481 (502)
Q Consensus 418 ~v~~VI~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~ 481 (502)
++++||.-..-.. .-..|...+.+..+.-....-+++++.--...+...+.+++..+
T Consensus 146 ~~~~lViDEah~~-------~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 202 (206)
T 1vec_A 146 HVQMIVLDEADKL-------LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp TCCEEEEETHHHH-------TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred cCCEEEEEChHHh-------HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCC
Confidence 8888885332100 00113222223222112234455555444455666666666544
No 179
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.90 E-value=2.9 Score=36.69 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=57.6
Q ss_pred EEecCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 010762 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (502)
.+..+....|.....-.+..... ...++||.++++.-+..+++.+... +..+..++|+..... ....+..
T Consensus 71 li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~ 147 (237)
T 3bor_A 71 IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQA 147 (237)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhc
Confidence 44555666666553332333322 4568999999999999998888764 567888888765332 2334556
Q ss_pred CCCeEEEEcC-----cccc-CCCCCCCCEEEE
Q 010762 399 GLTQVLISTD-----VLAR-GFDQQQVNLIVN 424 (502)
Q Consensus 399 ~~~~iLv~T~-----~~~~-Gldi~~v~~VI~ 424 (502)
+...|+|+|. .+.+ .+++..+++||.
T Consensus 148 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 148 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 6689999993 3333 466778888885
No 180
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.74 E-value=2.2 Score=36.33 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=62.7
Q ss_pred EEecCChHHHHHHHHHHHHHhc------ccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHH
Q 010762 326 KVYCPDELAKVMVIRDRIFELG------EKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFK 397 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~------~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~ 397 (502)
.+..+....|.....-.+.... ..+.++||.++++.-+..+++.+... ++.+..++|+.+.......+.
T Consensus 42 li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 118 (207)
T 2gxq_A 42 IGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL--- 118 (207)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---
T ss_pred EEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---
Confidence 3444555556554332233322 24578999999999999999998876 467889999887554433332
Q ss_pred cCCCeEEEEcC-----cc-ccCCCCCCCCEEEEe
Q 010762 398 DGLTQVLISTD-----VL-ARGFDQQQVNLIVNY 425 (502)
Q Consensus 398 ~~~~~iLv~T~-----~~-~~Gldi~~v~~VI~~ 425 (502)
....|+|+|. .+ ...+++..+++||.-
T Consensus 119 -~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 119 -RGADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp -HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred -CCCCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 2468999994 22 234667788888853
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.55 E-value=0.39 Score=44.14 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.2
Q ss_pred ccEEEECcCCCcchhHhHH
Q 010762 141 RNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~ 159 (502)
.-+++.|++|+|||.....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 8899999999999986433
No 182
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.53 E-value=6 Score=34.72 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=53.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC-----ccc-cCCCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLA-RGFDQQQ 418 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~-~Gldi~~ 418 (502)
.+.++||.+++++-+..+++.+.. .++.+..++|+.+...+...+. . ...|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 456799999999999888776654 4889999999998776654443 2 468999994 222 3457788
Q ss_pred CCEEEE
Q 010762 419 VNLIVN 424 (502)
Q Consensus 419 v~~VI~ 424 (502)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888885
No 183
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.31 E-value=0.35 Score=47.37 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57999999999999863
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.16 E-value=0.55 Score=45.32 Aligned_cols=17 Identities=47% Similarity=0.458 Sum_probs=14.9
Q ss_pred ccEEE--ECcCCCcchhHh
Q 010762 141 RNLIA--QARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv--~a~TGsGKTl~~ 157 (502)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 67888 999999999863
No 185
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.86 E-value=6.4 Score=34.79 Aligned_cols=72 Identities=15% Similarity=0.292 Sum_probs=53.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----cc--cCCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LA--RGFDQQ 417 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~--~Gldi~ 417 (502)
...++||.++++.-+..+++.+... ++.+..++|+.+...+...+ .+...|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999888777654 78999999998866544333 246789999942 22 457788
Q ss_pred CCCEEEE
Q 010762 418 QVNLIVN 424 (502)
Q Consensus 418 ~v~~VI~ 424 (502)
.+++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8888885
No 186
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.74 E-value=1.5 Score=44.02 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=72.9
Q ss_pred EEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEE
Q 010762 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 404 (502)
Q Consensus 325 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iL 404 (502)
..+..+....|.....- ... ...+.+||.++++.-+......|...|+.+..+||+.+..++..++..+..|..+|+
T Consensus 43 ~lv~apTGsGKTl~~~l--p~l-~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~il 119 (523)
T 1oyw_A 43 CLVVMPTGGGKSLCYQI--PAL-LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLL 119 (523)
T ss_dssp EEEECSCHHHHHHHHHH--HHH-HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEE
T ss_pred EEEECCCCcHHHHHHHH--HHH-HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 44566777777654332 111 135789999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcc------ccCCCCCCCCEEEE
Q 010762 405 ISTDVL------ARGFDQQQVNLIVN 424 (502)
Q Consensus 405 v~T~~~------~~Gldi~~v~~VI~ 424 (502)
++|.-- ...+...++.+||.
T Consensus 120 v~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 120 YIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECHHHHhChHHHHHHhhCCCCEEEE
Confidence 998421 12233345666664
No 187
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.69 E-value=3.6 Score=40.74 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=29.6
Q ss_pred CCCCccCCCCCHHHHHHHHhhC-CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~-g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|+++.-..+....+..-. .+..|. .+..+-....+.+++.||+|+|||+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHHH
Confidence 3557888876666665554310 011111 11111001125699999999999985
No 188
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.54 E-value=1.1 Score=40.79 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=19.3
Q ss_pred hcCCCCccEEEECcCCCcchhHhHHHH
Q 010762 135 ILTPPYRNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 135 il~~~~~~~lv~a~TGsGKTl~~l~~i 161 (502)
+..| .-+++.|++|+|||......+
T Consensus 27 l~~G--~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAG--TVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETT--SEEEEEESTTSSHHHHHHHHH
T ss_pred ccCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 4456 899999999999998654433
No 189
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.38 E-value=0.75 Score=42.45 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+-+++.+++|+|||...
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 77889999999999753
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.37 E-value=0.74 Score=40.26 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.5
Q ss_pred ccEEEECcCCCcchhHhH
Q 010762 141 RNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l 158 (502)
.-+++.|++|+|||....
T Consensus 24 ~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 789999999999997533
No 191
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.23 E-value=1.3 Score=38.97 Aligned_cols=39 Identities=15% Similarity=-0.079 Sum_probs=24.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCC---CCCCeEEEecC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICP 179 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~---~~~~~~lil~P 179 (502)
.-+++.||+|+|||......+...+... ..+..++++.-
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 8899999999999987555444323211 01345666653
No 192
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=90.01 E-value=1.9 Score=37.85 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=50.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----ccc--CCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LAR--GFDQQ 417 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~~--Gldi~ 417 (502)
.+.++||.++++.-+..+++.+... ++.+..++|+.+.......+ +...|+|+|.- +.+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4678999999999999998888764 47889999987654433322 45789999942 222 36677
Q ss_pred CCCEEEE
Q 010762 418 QVNLIVN 424 (502)
Q Consensus 418 ~v~~VI~ 424 (502)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 8888885
No 193
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.70 E-value=0.5 Score=38.11 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.5
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.++++.||+|+|||..+
T Consensus 25 ~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp SCEEEESSTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 78999999999999863
No 194
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.67 E-value=0.28 Score=40.94 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=44.2
Q ss_pred CcHHHHhhhhhhcCCCCccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHH
Q 010762 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (502)
Q Consensus 124 p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q 186 (502)
..+-|..++..++....+-.++.+.-|++||...+..++.... ..|.++.+|.|+..-...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--HTTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--hcCeEEEEEcCchHHHHH
Confidence 3466888888887664578899999999999884443332222 357789999999876555
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.00 E-value=1.3 Score=45.15 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=62.3
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH--HcCCCeE
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF--KDGLTQV 403 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f--~~~~~~i 403 (502)
.+..+....|.....- ... ...+.+||.+|++.-+......|...|+.+..++|+++..++..++..+ ..+..+|
T Consensus 63 lv~~pTGsGKTl~~~l--pal-~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~I 139 (591)
T 2v1x_A 63 FLVMPTGGGKSLCYQL--PAL-CSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKL 139 (591)
T ss_dssp EEECCTTSCTTHHHHH--HHH-TSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCE
T ss_pred EEEECCCChHHHHHHH--HHH-HcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCE
Confidence 3444555555443221 111 2457899999999999999999999999999999999999998888888 4678899
Q ss_pred EEEcC
Q 010762 404 LISTD 408 (502)
Q Consensus 404 Lv~T~ 408 (502)
+++|.
T Consensus 140 lv~Tp 144 (591)
T 2v1x_A 140 IYVTP 144 (591)
T ss_dssp EEECH
T ss_pred EEECh
Confidence 99997
No 196
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.98 E-value=0.36 Score=45.69 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||||||||..
T Consensus 124 g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTT 139 (356)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6899999999999985
No 197
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.95 E-value=1.4 Score=43.47 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=46.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCccccCCCCCCCCEEEEe
Q 010762 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~Gldi~~v~~VI~~ 425 (502)
+.+++|.|.|...++++.+.|.+.++.+......- .+..| .|.|+...+..|+-+|..+.+|.-
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~----------~~~~g--~v~i~~g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EASDR--GRYLMIGAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGG----------GCCTT--CEEEEESCCCSCEEETTTTEEEEE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCchh----------hcCCC--cEEEEEcccccCcccCCCCEEEEE
Confidence 56889999999999999999988887765443211 01223 566677788899988888887753
No 198
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.88 E-value=1 Score=41.94 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=32.6
Q ss_pred ceEEEEEeCchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeecCChhHHHHHHHHh
Q 010762 247 RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIV 304 (502)
Q Consensus 247 ~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 304 (502)
..+++++|.+.+.-....+...+..+...+. +...++++.++........+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~---~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTK---PNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHC---CSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhc---CCCCEEEEecHHHHHHHHHHHHHH
Confidence 3457889988765432234444444444443 356788888887766666555543
No 199
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.70 E-value=1.3 Score=46.70 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.2
Q ss_pred CCccEEEECcCCCcchhHh
Q 010762 139 PYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 139 ~~~~~lv~a~TGsGKTl~~ 157 (502)
...++++.||+|+|||...
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 3478999999999999863
No 200
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.69 E-value=1.7 Score=44.44 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.0
Q ss_pred cCCCCccEEEECcCCCcchhHh
Q 010762 136 LTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 136 l~~~~~~~lv~a~TGsGKTl~~ 157 (502)
..| ..+++.||+|+|||..+
T Consensus 58 ~~g--~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 58 NQK--RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HTT--CCEEEECCTTSSHHHHH
T ss_pred cCC--CEEEEEeCCCCCHHHHH
Confidence 345 89999999999999863
No 201
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.44 E-value=1.1 Score=41.86 Aligned_cols=55 Identities=15% Similarity=-0.046 Sum_probs=32.2
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCC---CCCCeEEEecCcHHH-HHHHHHHHHHh
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTREL-AIQNLEVLRKM 194 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~---~~~~~~lil~Pt~~L-a~q~~~~~~~~ 194 (502)
+.-+++.|++|+|||...+-.+....... ..+..++++.-...+ ..++...+..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999987555444433221 114577877644321 34444444433
No 202
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=88.32 E-value=2.1 Score=37.16 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=56.2
Q ss_pred EEecCChHHHHHH-HHHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 010762 326 KVYCPDELAKVMV-IRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (502)
Q Consensus 326 ~~~~~~~~~k~~~-l~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (502)
.+..+....|... +...+.... ..+.++||.++++.-+..+++.+... ++.+..++|+.+.......+
T Consensus 55 lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----- 129 (224)
T 1qde_A 55 LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----- 129 (224)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----
T ss_pred EEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----
Confidence 4455555666554 223222222 24568999999999999888877653 67889999987654433222
Q ss_pred CCCeEEEEcCcc------ccCCCCCCCCEEEE
Q 010762 399 GLTQVLISTDVL------ARGFDQQQVNLIVN 424 (502)
Q Consensus 399 ~~~~iLv~T~~~------~~Gldi~~v~~VI~ 424 (502)
....|+|+|.-. ...+++..+++||.
T Consensus 130 ~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 130 RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 237899999421 34566778888885
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.16 E-value=0.49 Score=54.61 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=28.4
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
++++++.+|+|+|||..++..+.+... .+.+++++....
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEccc
Confidence 389999999999999976555444332 456788887653
No 204
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.06 E-value=4.8 Score=38.16 Aligned_cols=96 Identities=11% Similarity=0.211 Sum_probs=65.2
Q ss_pred EEecCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHH
Q 010762 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFK 397 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~ 397 (502)
.+..+....|.....-.+..... ...++||.|+++.-+..+++.+... ++.+..++|+.+...... .+.
T Consensus 49 lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~ 125 (391)
T 1xti_A 49 LCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLK 125 (391)
T ss_dssp EEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHH
T ss_pred EEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHh
Confidence 44455555665543332333221 3558999999999999988887764 789999999998765544 344
Q ss_pred cCCCeEEEEcCc-c-----ccCCCCCCCCEEEE
Q 010762 398 DGLTQVLISTDV-L-----ARGFDQQQVNLIVN 424 (502)
Q Consensus 398 ~~~~~iLv~T~~-~-----~~Gldi~~v~~VI~ 424 (502)
.+...|+|+|.- + ...+++..+++||.
T Consensus 126 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 126 KNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp HSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred cCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 577789999942 1 23456778888885
No 205
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.04 E-value=3.7 Score=35.80 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=63.0
Q ss_pred EEecCChHHHHHHH-HHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHH
Q 010762 326 KVYCPDELAKVMVI-RDRIFELG--EKMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFK 397 (502)
Q Consensus 326 ~~~~~~~~~k~~~l-~~~l~~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~ 397 (502)
.+..+....|.... ...+.... ..+.++||.++++.-+..+++.+... ++.+..++|+.+...+...+
T Consensus 65 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 140 (230)
T 2oxc_A 65 IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---- 140 (230)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----
Confidence 34445555565442 22222322 24578999999999999998888764 67899999998876654433
Q ss_pred cCCCeEEEEcCcc------ccCCCCCCCCEEEE
Q 010762 398 DGLTQVLISTDVL------ARGFDQQQVNLIVN 424 (502)
Q Consensus 398 ~~~~~iLv~T~~~------~~Gldi~~v~~VI~ 424 (502)
....|+|+|.-. ...+++..+++||.
T Consensus 141 -~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 -KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp -TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred -cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 357899999531 23466778888875
No 206
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=87.80 E-value=3.5 Score=35.78 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=49.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc------cccCCCCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV------LARGFDQQQV 419 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~------~~~Gldi~~v 419 (502)
.+.++||.++++.-+..+++.+... ++.+..++|+.+...+... +. ....|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 5678999999999999999888774 7788999998765544332 23 34789999942 2235677888
Q ss_pred CEEEE
Q 010762 420 NLIVN 424 (502)
Q Consensus 420 ~~VI~ 424 (502)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88885
No 207
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.67 E-value=1.3 Score=42.06 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=24.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt 180 (502)
.-+++.+++|+|||...+-.+..... .+..++++..-
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E 111 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAE 111 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECC
Confidence 78999999999999865443333221 23467777644
No 208
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.48 E-value=0.58 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=17.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhcc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
.-+++.||||||||.. +-.++..+
T Consensus 168 gii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHhhc
Confidence 6789999999999985 33344333
No 209
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.42 E-value=1.9 Score=40.46 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=27.7
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCC---CCCCeEEEecCcH
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTR 181 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~---~~~~~~lil~Pt~ 181 (502)
+.-+++.|++|+|||...+-.+....... ..+..++++.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 47899999999999987555444433221 1345778876543
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.70 E-value=0.66 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=17.5
Q ss_pred hhcCCCCccEEEECcCCCcchhH
Q 010762 134 MILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 134 ~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..+..+++++.||+|+|||..
T Consensus 185 ~l~~~~~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 185 ILLRRTKNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp HHHCSSCCCCEEEECTTSCHHHH
T ss_pred HHhcCCCCceEEEcCCCCCHHHH
Confidence 33334346899999999999985
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.58 E-value=1.5 Score=46.16 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.4
Q ss_pred CccEEEECcCCCcchhH
Q 010762 140 YRNLIAQARNGSGKTTC 156 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~ 156 (502)
.+.+++.||+|+|||+.
T Consensus 238 p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 37899999999999985
No 212
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.56 E-value=2.4 Score=44.72 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.3
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999863
No 213
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.47 E-value=0.63 Score=42.91 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=51.5
Q ss_pred cEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCC
Q 010762 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (502)
-+++.+|+|+|||...+-.+.+... ...+.+++++..-..+... .+++++ +..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~---ra~~lG----vd~------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA---YLRSMG----VDP------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH---HHHHTT----CCG-------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH---HHHHhC----CCH-------------------
Confidence 5899999999999875544443332 1235678888765554322 233332 210
Q ss_pred CCCeEEEeCchHHHHH----HHc-CccCCCceEEEEEeCchhhh
Q 010762 222 VTAQVVIGTPGTIKKW----MSA-KKLGFSRLKILVYDEADHML 260 (502)
Q Consensus 222 ~~~~Ilv~Tp~~l~~~----l~~-~~~~~~~~~~lVlDEah~l~ 260 (502)
.++++..|..+.+. +.. ..+.-..+++||+|-+..+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13555555443332 221 11223468999999999886
No 214
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.13 E-value=1.4 Score=43.35 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=30.5
Q ss_pred CceEEEEEeCchhhhcccCCHHHHHHHHHHhh---hcCCCeeEEEEeecCChhHHHHHHHH
Q 010762 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIE---RSSGHCQVLLFSATFNETVKNFVTRI 303 (502)
Q Consensus 246 ~~~~~lVlDEah~l~~~~~~~~~~~~i~~~l~---~~~~~~q~v~~SAT~~~~~~~~~~~~ 303 (502)
..++++++|=+-++-....+...+..+..... ...+..-+++++||...+....++.+
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f 434 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLF 434 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHH
Confidence 34568899988665332222233333433332 22233457788888765554444444
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=85.86 E-value=1.8 Score=45.96 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.3
Q ss_pred CccEEEECcCCCcchhH
Q 010762 140 YRNLIAQARNGSGKTTC 156 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~ 156 (502)
++.+++.||+|+|||+.
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 37899999999999985
No 216
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=85.11 E-value=6.8 Score=34.57 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=51.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----c-ccCCCCCCC
Q 010762 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----L-ARGFDQQQV 419 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~-~~Gldi~~v 419 (502)
+.++||.+++++-+..+++.+... ++.+..++|+.+.......+ .....|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999888877653 57888899988755443322 345789999942 1 234577788
Q ss_pred CEEEE
Q 010762 420 NLIVN 424 (502)
Q Consensus 420 ~~VI~ 424 (502)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88885
No 217
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=85.04 E-value=2.3 Score=46.62 Aligned_cols=92 Identities=12% Similarity=0.202 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----CC----cEEEecCCCCHHHHHHHHHHHHcCCCe
Q 010762 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GY----EVTTIMGATIQEERDKIVKEFKDGLTQ 402 (502)
Q Consensus 331 ~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~----~~~~l~~~~~~~~r~~~~~~f~~~~~~ 402 (502)
....|....+..+......+.++||.++++.-|..+++.++.. ++ .+..+||+.+...+....+.+.. ..
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~ 157 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FK 157 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CS
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CC
Confidence 3344443333334444446789999999999999888887643 56 89999999998888777777766 89
Q ss_pred EEEEcCc-cccCCC-CCCCCEEEE
Q 010762 403 VLISTDV-LARGFD-QQQVNLIVN 424 (502)
Q Consensus 403 iLv~T~~-~~~Gld-i~~v~~VI~ 424 (502)
|+|+|.- +..-+. +..+++||.
T Consensus 158 IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 158 IVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp EEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred EEEEcHHHHHHHHHHhccCCEEEE
Confidence 9999952 222222 557788775
No 218
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=84.59 E-value=1 Score=45.34 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||+|+|||..
T Consensus 109 ~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSL 124 (543)
T ss_dssp CEEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 219
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.32 E-value=14 Score=34.42 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=62.3
Q ss_pred EEecCChHHHHHHHHHHHHHhcc--cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcC
Q 010762 326 KVYCPDELAKVMVIRDRIFELGE--KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDG 399 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~ 399 (502)
.+..+....|.......+..... .+.++||.++++.-+..+++.+... ++.+..++|+.........+ .
T Consensus 48 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~-- 122 (367)
T 1hv8_A 48 VAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K-- 122 (367)
T ss_dssp EEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H--
T ss_pred EEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C--
Confidence 34455556665554333333322 4678999999999999888888763 67889999998765544333 2
Q ss_pred CCeEEEEcCc-----c-ccCCCCCCCCEEEE
Q 010762 400 LTQVLISTDV-----L-ARGFDQQQVNLIVN 424 (502)
Q Consensus 400 ~~~iLv~T~~-----~-~~Gldi~~v~~VI~ 424 (502)
...|+|+|.- + ...+++..+++||.
T Consensus 123 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 123 NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 4689999942 1 22356777888875
No 220
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=83.80 E-value=0.84 Score=50.82 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=28.2
Q ss_pred EEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 144 lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
+|.|..|||||.+.+--+...+.....+.++|+|||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc
Confidence 67888999999986655554444444557899999986
No 221
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=83.48 E-value=8.4 Score=34.29 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=53.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC-----ccc--cCCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLA--RGFDQQ 417 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~--~Gldi~ 417 (502)
.+.++||.++++.-+..+++.++.. +..+..++|+......... +..+ ..|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999988888763 6778889998876554433 3334 78999993 222 356788
Q ss_pred CCCEEEE
Q 010762 418 QVNLIVN 424 (502)
Q Consensus 418 ~v~~VI~ 424 (502)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8988885
No 222
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.42 E-value=0.84 Score=44.58 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=30.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~ 185 (502)
.++++.|+||||||... ..++..+.. .+..++|+=|..++..
T Consensus 54 ~h~~i~G~tGsGKs~~~-~~li~~~~~--~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLL-RELAYTGLL--RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHH-HHHHHHHHH--TTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHH--CCCcEEEEeCCCchhH
Confidence 79999999999999974 333333322 3457888889888754
No 223
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.30 E-value=6.3 Score=38.43 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=64.3
Q ss_pred EEecCChHHHHHHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHhC-CC---cEEEecCCCCHHHHHHHHHHHHcCC
Q 010762 326 KVYCPDELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDF-GY---EVTTIMGATIQEERDKIVKEFKDGL 400 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~-~~---~~~~l~~~~~~~~r~~~~~~f~~~~ 400 (502)
.+..+....|.......+.... ....++||.|+++.-+...++.+... +. .+..+||+.....+..... .
T Consensus 27 ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~ 101 (494)
T 1wp9_A 27 LIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----R 101 (494)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----H
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----C
Confidence 3444555556554443333322 35789999999999999998888765 55 8999999998876654432 3
Q ss_pred CeEEEEcCc-c-----ccCCCCCCCCEEEEe
Q 010762 401 TQVLISTDV-L-----ARGFDQQQVNLIVNY 425 (502)
Q Consensus 401 ~~iLv~T~~-~-----~~Gldi~~v~~VI~~ 425 (502)
..|+|+|.- + ...+....+++||.-
T Consensus 102 ~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 132 (494)
T 1wp9_A 102 AKVIVATPQTIENDLLAGRISLEDVSLIVFD 132 (494)
T ss_dssp CSEEEECHHHHHHHHHTTSCCTTSCSEEEEE
T ss_pred CCEEEecHHHHHHHHhcCCcchhhceEEEEE
Confidence 579999842 2 124567778888853
No 224
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.30 E-value=0.72 Score=43.51 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=25.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~ 181 (502)
.-+++.+|+|+|||...+. +...+. ..+..++++....
T Consensus 62 ~i~~I~GppGsGKSTLal~-la~~~~--~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALH-AIAEAQ--KMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHH-HHHHHH--HTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHH-HHHHHH--hcCCeEEEEeccc
Confidence 7899999999999986433 333222 1344677776543
No 225
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=83.27 E-value=16 Score=34.51 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=62.4
Q ss_pred EEecCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 010762 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (502)
.+..+....|.....-.+..... .+.++||.++++.-+..+++.+... ++.+..++|+......... ..
T Consensus 62 li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~ 137 (400)
T 1s2m_A 62 LARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LN 137 (400)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TT
T ss_pred EEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hc
Confidence 34455555665543332333222 4568999999999998888877654 6789999999875543221 24
Q ss_pred CCCeEEEEcC-----ccc-cCCCCCCCCEEEEe
Q 010762 399 GLTQVLISTD-----VLA-RGFDQQQVNLIVNY 425 (502)
Q Consensus 399 ~~~~iLv~T~-----~~~-~Gldi~~v~~VI~~ 425 (502)
+...|+|+|. .+. ...++.++++||.-
T Consensus 138 ~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 138 ETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred CCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 5678999994 222 34567788888853
No 226
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.23 E-value=0.76 Score=38.54 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.6
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
.+.+++.|++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 378999999999999863
No 227
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=83.10 E-value=1.2 Score=37.04 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=57.6
Q ss_pred EEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCC
Q 010762 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPP 221 (502)
Q Consensus 144 lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 221 (502)
++..+....|-. .+.-++.. ....++||.|+++..+..++..+... ++.+..+++....... .......
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGS----ITIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTT----SCCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred EEEcCChHhHHH-HHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 333433333533 34444443 24568999999999999988888764 4555566655433221 1122233
Q ss_pred CCCeEEEeCchHHHHHHHcCccCCCceEEEEE
Q 010762 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253 (502)
Q Consensus 222 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVl 253 (502)
+..+|+|+|. +-...+++..+++||.
T Consensus 83 g~~~vLvaT~------~~~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 83 GKEKVLITTN------VCARGIDVKQVTIVVN 108 (175)
T ss_dssp TSCSEEEECC------SCCTTTCCTTEEEEEE
T ss_pred CCCeEEEEec------chhcCCCcccCCEEEE
Confidence 4578999994 2234667888998885
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.02 E-value=4.4 Score=43.35 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||||+|||..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37999999999999863
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.01 E-value=0.47 Score=44.79 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=25.1
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt 180 (502)
+-+++.|++|+|||...+..+..... .+..++++.-.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E 98 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAE 98 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECC
Confidence 88999999999999875444433322 24467777643
No 230
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.82 E-value=0.37 Score=43.80 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=26.2
Q ss_pred CCCCccCCCCCHHHHHHHHhhC--CCCCCcHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 98 ~~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..+|++++-...+.+.|.... .+..+.-++. +..-. .+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~--~~l~~---~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKA--LGLVT---PAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHH--TTCCC---CSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHH--cCCCC---CCeEEEECCCCCcHHHH
Confidence 3567888887777777665411 1111111111 11111 14599999999999985
No 231
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.78 E-value=3.8 Score=37.45 Aligned_cols=16 Identities=38% Similarity=0.356 Sum_probs=14.3
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+.+.+.+++|+|||..
T Consensus 99 ~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTT 114 (295)
T ss_dssp EEEEEECCTTTTHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7888889999999975
No 232
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.76 E-value=4.9 Score=39.31 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=24.8
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
+.-+++.|++|+|||...+-.+...... .+..++++..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC
Confidence 3789999999999998654444333221 2336777763
No 233
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=82.40 E-value=0.92 Score=45.21 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||||||||..
T Consensus 261 ~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 261 FSAIVVGETASGKTTT 276 (511)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 234
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.38 E-value=0.82 Score=38.18 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=15.6
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
.+.+++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 378999999999999863
No 235
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=82.33 E-value=4.2 Score=35.02 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=60.0
Q ss_pred EEecCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHH
Q 010762 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEERDKIVK 394 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~~ 394 (502)
.+..+....|.....-.+..... .+.++||.++++.-+..+++.+... ++.+..++|+.+......
T Consensus 45 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 121 (219)
T 1q0u_A 45 VGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE--- 121 (219)
T ss_dssp EEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---
T ss_pred EEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---
Confidence 44555666666553322333222 3568999999999999888877653 678889999875433211
Q ss_pred HHHcCCCeEEEEcC-----ccc-cCCCCCCCCEEEE
Q 010762 395 EFKDGLTQVLISTD-----VLA-RGFDQQQVNLIVN 424 (502)
Q Consensus 395 ~f~~~~~~iLv~T~-----~~~-~Gldi~~v~~VI~ 424 (502)
.+ .....|+|+|. .+. ..+++..+++||.
T Consensus 122 ~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 122 KL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp CC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred Hc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 11 23567999994 222 2456777888775
No 236
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=81.42 E-value=5 Score=40.24 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=48.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----cccC-C-CCCC
Q 010762 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LARG-F-DQQQ 418 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~~G-l-di~~ 418 (502)
..++||.|+++.-+...+..+... ++.+..+||+.+...+...+. ....|+|+|.- +..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999988888777664 899999999986554432221 13579999942 2222 3 5778
Q ss_pred CCEEEEec
Q 010762 419 VNLIVNYD 426 (502)
Q Consensus 419 v~~VI~~~ 426 (502)
+++||.-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 88888643
No 237
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.01 E-value=1.1 Score=42.43 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=17.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhcc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
..+++.||||||||.. +-++..+
T Consensus 176 ~~i~ivG~sGsGKSTl--l~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTL--MKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHH--HHHHHTT
T ss_pred CEEEEECCCCCCHHHH--HHHHHhc
Confidence 8999999999999984 4444443
No 238
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=80.95 E-value=17 Score=34.18 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=63.3
Q ss_pred EEEecCChHHHHHHHHHHHHHhc---ccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHH
Q 010762 325 YKVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFK 397 (502)
Q Consensus 325 ~~~~~~~~~~k~~~l~~~l~~~~---~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~ 397 (502)
..+..+....|.....-.+.... ..+.++||.|+++.-+..+++.+.. .++.+..++|+.+.......+.
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 137 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--- 137 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH---
T ss_pred EEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC---
Confidence 34555666777655332233222 2456999999999999988887765 4688999999988766554443
Q ss_pred cCCCeEEEEcCc-----c-ccCCCCCCCCEEEE
Q 010762 398 DGLTQVLISTDV-----L-ARGFDQQQVNLIVN 424 (502)
Q Consensus 398 ~~~~~iLv~T~~-----~-~~Gldi~~v~~VI~ 424 (502)
...|+|+|.- + ...+.+..+++||.
T Consensus 138 --~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 138 --DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp --HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 4579999932 1 23455667888875
No 239
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=80.60 E-value=1 Score=36.98 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=55.7
Q ss_pred CcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEE
Q 010762 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVI 228 (502)
Q Consensus 151 sGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv 228 (502)
..|... +.-++... .+.++||.|+++.-+..+.+.+... ++.+..++++...... .......+...|+|
T Consensus 20 ~~K~~~-L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv 90 (163)
T 2hjv_A 20 ENKFSL-LKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLV 90 (163)
T ss_dssp GGHHHH-HHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred HHHHHH-HHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 445433 44455432 4458999999999999999888775 4555566655432211 11122234578999
Q ss_pred eCchHHHHHHHcCccCCCceEEEEEeC
Q 010762 229 GTPGTIKKWMSAKKLGFSRLKILVYDE 255 (502)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~lVlDE 255 (502)
+|. +-...+++..+++||.-+
T Consensus 91 ~T~------~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 91 ATD------VAARGIDIENISLVINYD 111 (163)
T ss_dssp ECG------GGTTTCCCSCCSEEEESS
T ss_pred ECC------hhhcCCchhcCCEEEEeC
Confidence 993 223466788888887643
No 240
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=80.15 E-value=3.1 Score=31.19 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=33.8
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 010762 347 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (502)
Q Consensus 347 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (502)
.....+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 446678999999999999999999999995 889999874
No 241
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=79.89 E-value=3.6 Score=40.13 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=44.7
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEE
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (502)
+.++||+||++.-+..+++.++.. ++.+..+++. .....+.....+..+|+|||. +-...+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~--~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK--TFEREYPTIKQKKPDFILATD------IAEMGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS--SCC--------CCCSEEEESS------STTCCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch--hHHHHHhhhcCCCceEEEECC------hhheeeccC-ceE
Confidence 458999999999999999988875 4555566652 222334445556789999995 233456677 777
Q ss_pred EE
Q 010762 251 LV 252 (502)
Q Consensus 251 lV 252 (502)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 242
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=79.71 E-value=17 Score=34.58 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=62.6
Q ss_pred EEecCChHHHHHHHHHHHHHhc---ccCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 010762 326 KVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (502)
.+..+....|.....-.+.... ....++||.++++.-+..+++.+... ++.+..++|+.........+.
T Consensus 78 lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---- 153 (410)
T 2j0s_A 78 IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---- 153 (410)
T ss_dssp EEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----
T ss_pred EEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----
Confidence 3445555666654433333332 25679999999999999998888654 578889999987665444332
Q ss_pred CCCeEEEEcC-----cccc-CCCCCCCCEEEE
Q 010762 399 GLTQVLISTD-----VLAR-GFDQQQVNLIVN 424 (502)
Q Consensus 399 ~~~~iLv~T~-----~~~~-Gldi~~v~~VI~ 424 (502)
....|+|+|. .+.+ .++...+++||.
T Consensus 154 ~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 154 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred cCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 2357999994 2333 456667888775
No 243
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.65 E-value=3.4 Score=47.93 Aligned_cols=45 Identities=16% Similarity=-0.017 Sum_probs=31.7
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHH
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNL 188 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~ 188 (502)
++++++.+++|+|||...+..+.+.+. .+.+++++.-. ++..+++
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k---~Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTT-SCCCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEcc-ccHHHHH
Confidence 489999999999999986666665553 35567777633 4444544
No 244
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=79.43 E-value=1.9 Score=32.60 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=34.3
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 010762 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (502)
....+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 45678999999999999999999999999999999874
No 245
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=78.88 E-value=9.6 Score=28.00 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=42.6
Q ss_pred EEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeE
Q 010762 353 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (502)
Q Consensus 353 ~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~i 403 (502)
.+||....+-...+.+.++..|..+..++++.....|.+-++.|......+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 367777778888888899999999999999999999999999997654444
No 246
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=78.72 E-value=1.2 Score=41.55 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=18.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
..+++.||||||||. ++-++..+.
T Consensus 172 ~~v~i~G~~GsGKTT--ll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTT--YIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHH--HHHHGGGGS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 899999999999998 444554544
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.64 E-value=0.94 Score=38.00 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-+++.||+|+|||..
T Consensus 6 ~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.54 E-value=1 Score=37.69 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=15.5
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.|++|||||...
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 78999999999999864
No 249
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.50 E-value=4.1 Score=35.82 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=59.0
Q ss_pred EEecCChHHHHHHH-HHHHHHhc---ccCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHH
Q 010762 326 KVYCPDELAKVMVI-RDRIFELG---EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFK 397 (502)
Q Consensus 326 ~~~~~~~~~k~~~l-~~~l~~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~ 397 (502)
.+..+....|.... ...+.... ..+.++||.++++.-+..+++.+... ++.+..++|+.....+ .....
T Consensus 70 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 146 (245)
T 3dkp_A 70 LASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKS 146 (245)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTS
T ss_pred EEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhh
Confidence 34444555555432 22222222 24558999999999999999888764 6777777765422111 11122
Q ss_pred cCCCeEEEEcCc-----ccc---CCCCCCCCEEEEe
Q 010762 398 DGLTQVLISTDV-----LAR---GFDQQQVNLIVNY 425 (502)
Q Consensus 398 ~~~~~iLv~T~~-----~~~---Gldi~~v~~VI~~ 425 (502)
.+...|+|+|.- +.+ .+++.++++||.-
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 456789999932 222 4788889988853
No 250
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=77.78 E-value=3.1 Score=37.23 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.|++|+|||..
T Consensus 30 ~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 30 KPVLIIGERGTGKELI 45 (265)
T ss_dssp SCEEEECCTTSCHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 7899999999999985
No 251
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.62 E-value=1.9 Score=37.12 Aligned_cols=30 Identities=27% Similarity=0.122 Sum_probs=23.1
Q ss_pred cHHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+.-|..++..+-.| .-+.+.||.|||||..
T Consensus 9 ~~g~~~~l~~i~~G--e~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTN--TIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHC--SEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCC--CEEEEECCCCCCHHHH
Confidence 33455666666667 8899999999999985
No 252
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.58 E-value=0.97 Score=40.65 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.||+|+|||...
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 67999999999999863
No 253
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.50 E-value=8.1 Score=35.28 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=48.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc------c-cCCCCC
Q 010762 350 MGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL------A-RGFDQQ 417 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~------~-~Gldi~ 417 (502)
..++||.+++++-|..++..+... ++.+..++|+.....+. .....|+|+|.-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988877654 46777777766432211 3456799999532 1 357788
Q ss_pred CCCEEEEe
Q 010762 418 QVNLIVNY 425 (502)
Q Consensus 418 ~v~~VI~~ 425 (502)
.+.+||.-
T Consensus 235 ~l~~lVlD 242 (300)
T 3fmo_B 235 KIKVFVLD 242 (300)
T ss_dssp GCSEEEET
T ss_pred hceEEEEe
Confidence 89998853
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.49 E-value=20 Score=34.55 Aligned_cols=42 Identities=26% Similarity=0.172 Sum_probs=24.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~ 185 (502)
+.+++.+++|+|||......+. .+.. .+.+++++. +.+..+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~-~l~~--~g~~Vllvd~D~~r~aa~ 142 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL-YYKG--KGRRPLLVAADTQRPAAR 142 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHT--TTCCEEEEECCSSCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH--cCCeEEEeeccccCchhH
Confidence 7788889999999986333222 2222 244565554 4444443
No 255
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=77.32 E-value=2.1 Score=31.70 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=33.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (502)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 5678999999999999999999999999999999864
No 256
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.31 E-value=8.6 Score=37.25 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC-----cccc-CCCCCCC
Q 010762 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLAR-GFDQQQV 419 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~-----~~~~-Gldi~~v 419 (502)
+.++||.+++++-+..+++.+... ++.+..++|+.+...+...+ .....|+|+|. .+.+ .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 468999999999999998888764 57888999999876554333 24578999994 2223 3567788
Q ss_pred CEEEE
Q 010762 420 NLIVN 424 (502)
Q Consensus 420 ~~VI~ 424 (502)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88885
No 257
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.15 E-value=0.9 Score=43.27 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||||||||..
T Consensus 137 ~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTT 152 (372)
T ss_dssp EEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 258
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=76.92 E-value=3.7 Score=32.08 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=32.9
Q ss_pred cC-CcEEEEc-CChhhHHHHHHHHHhCCCcEEEecCCCCH
Q 010762 349 KM-GQTIIFV-RTKNSASALHKALKDFGYEVTTIMGATIQ 386 (502)
Q Consensus 349 ~~-~~~lVF~-~s~~~~~~l~~~L~~~~~~~~~l~~~~~~ 386 (502)
.. .+++||| .+-..+..++..|...|+++..+.|++..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 44 7899999 57788889999999999999999999854
No 259
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=76.79 E-value=1.3 Score=38.22 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=49.3
Q ss_pred CCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCc
Q 010762 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (502)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 247 (502)
.+.++||.|+++.-+..+.+.+... ++.+..++++...... .......+..+|+|+|. +-...+++..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~ 99 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQ 99 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCcc
Confidence 3558999999999999988888765 4555566665443221 12222334578999994 2335667888
Q ss_pred eEEEEE
Q 010762 248 LKILVY 253 (502)
Q Consensus 248 ~~~lVl 253 (502)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 260
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=76.55 E-value=6.6 Score=41.62 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=57.9
Q ss_pred EEecCChHHHHHHHHHHHHHhccc-----CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHH
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEK-----MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEF 396 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f 396 (502)
.+..+....|.....-.+...... ++++||.|+++.-+...+..+... ++.+..+||+.+...+...+.
T Consensus 267 ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-- 344 (797)
T 4a2q_A 267 LICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI-- 344 (797)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH--
T ss_pred EEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh--
Confidence 344455555554433323322211 789999999999988888777654 899999999986655432221
Q ss_pred HcCCCeEEEEcCc-----cccC-C-CCCCCCEEEEe
Q 010762 397 KDGLTQVLISTDV-----LARG-F-DQQQVNLIVNY 425 (502)
Q Consensus 397 ~~~~~~iLv~T~~-----~~~G-l-di~~v~~VI~~ 425 (502)
+...|+|+|.- +..+ + .+.++++||.-
T Consensus 345 --~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 378 (797)
T 4a2q_A 345 --EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 378 (797)
T ss_dssp --HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEET
T ss_pred --CCCCEEEEchHHHHHHHHhccccccccCCEEEEE
Confidence 24689999932 2222 3 56678888853
No 261
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=76.33 E-value=6.4 Score=32.44 Aligned_cols=90 Identities=9% Similarity=0.084 Sum_probs=56.1
Q ss_pred CcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEE
Q 010762 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVI 228 (502)
Q Consensus 151 sGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv 228 (502)
..|... +..++... .+.++||.|+++.-+..+++.+... ++.+..+++....... .......+...|+|
T Consensus 16 ~~K~~~-L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv 86 (172)
T 1t5i_A 16 NEKNRK-LFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 86 (172)
T ss_dssp GGHHHH-HHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred HHHHHH-HHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEE
Confidence 445443 55555543 4458999999999999999888775 4555555555432211 11222334578999
Q ss_pred eCchHHHHHHHcCccCCCceEEEEEeC
Q 010762 229 GTPGTIKKWMSAKKLGFSRLKILVYDE 255 (502)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~lVlDE 255 (502)
+|.- ....+++..+++||.-+
T Consensus 87 aT~~------~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 87 ATNL------FGRGMDIERVNIAFNYD 107 (172)
T ss_dssp ESSC------CSTTCCGGGCSEEEESS
T ss_pred ECCc------hhcCcchhhCCEEEEEC
Confidence 9942 23456778888888643
No 262
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.29 E-value=2 Score=39.32 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6799999999999985
No 263
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.03 E-value=1.5 Score=37.35 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-+++.||||+|||..
T Consensus 35 ~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 35 LGVLITGDSGVGKSET 50 (205)
T ss_dssp EEEEEECCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 7899999999999865
No 264
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=76.02 E-value=1.5 Score=39.47 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+++.||||||||..
T Consensus 26 ~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTT 41 (261)
T ss_dssp EEEEEECSTTCSHHHH
T ss_pred CEEEEECCCCccHHHH
Confidence 8899999999999985
No 265
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=75.99 E-value=2.1 Score=31.89 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=33.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 010762 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (502)
.+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 35678999999998999999999999999999999863
No 266
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=75.91 E-value=1.9 Score=35.42 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=54.5
Q ss_pred chhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeC
Q 010762 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGT 230 (502)
Q Consensus 153 KTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~T 230 (502)
|... +..++... .+.++||.|+++.-+..+...+... ++.+..++++...... .......+...|+|+|
T Consensus 17 K~~~-l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 17 KYEC-LTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp HHHH-HHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred HHHH-HHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 5443 55555543 4568999999999999988888764 4455555555432211 1112223457899999
Q ss_pred chHHHHHHHcCccCCCceEEEEEeC
Q 010762 231 PGTIKKWMSAKKLGFSRLKILVYDE 255 (502)
Q Consensus 231 p~~l~~~l~~~~~~~~~~~~lVlDE 255 (502)
. .....+++..+++||.-+
T Consensus 88 ~------~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 88 D------LLARGIDVQQVSLVINYD 106 (165)
T ss_dssp G------GGTTTCCCCSCSEEEESS
T ss_pred C------hhhcCCCcccCCEEEEeC
Confidence 4 223456777888887643
No 267
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=75.84 E-value=2.6 Score=41.78 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.6
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.+++|.|.||||||.+.
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 78999999999999874
No 268
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=75.69 E-value=3 Score=30.38 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=31.8
Q ss_pred CcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 010762 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (502)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999999999999999999999888989874
No 269
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=75.66 E-value=2.4 Score=31.77 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=32.9
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCC
Q 010762 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGAT 384 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~ 384 (502)
.+..+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3567899999999899999999999999999898886
No 270
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=75.52 E-value=4.5 Score=40.46 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=50.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----cccC-C-CCCC
Q 010762 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LARG-F-DQQQ 418 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~~G-l-di~~ 418 (502)
+.++||.|+++.-+...+..+... ++.+..++|+.+...+...+. +...|+|+|.- +..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 778999999999888887777654 899999999986544322221 13679999842 2222 3 5667
Q ss_pred CCEEEEe
Q 010762 419 VNLIVNY 425 (502)
Q Consensus 419 v~~VI~~ 425 (502)
+++||.-
T Consensus 128 ~~~vViD 134 (555)
T 3tbk_A 128 FTLMIFD 134 (555)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 8888853
No 271
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=75.51 E-value=3.7 Score=45.65 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=41.2
Q ss_pred cEEEECcCCCcchhHhHHHHHhccCCC---------CCCCeEEEecCcHHHHHHHHHHHHHhh
Q 010762 142 NLIAQARNGSGKTTCFVLGMLSRVDPN---------LKAPQALCICPTRELAIQNLEVLRKMG 195 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~l~~il~~l~~~---------~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (502)
..+|.|..|||||.+..--++..+... ....++|+|+=|+..|.++.+.+....
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 459999999999998666566655421 234479999999999999998877643
No 272
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.26 E-value=2.8 Score=39.58 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=30.9
Q ss_pred CCCccCCCCCHHHHHHHHhhCCCCCCcHHHHh-hhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAI-SLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 99 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~-~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
..+|+++.=.....+.+..... .|.... .+..+ ....+.+++.||+|+|||..+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~----~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV----WPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH----HHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH----HHhhChHhHhhc-cCCCceEEEECCCCCCHHHHH
Confidence 4577777666777776654211 011100 00001 122378999999999999863
No 273
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=77.06 E-value=0.59 Score=38.82 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=46.1
Q ss_pred CCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCc--ccccCCCCCCCeEEEeCchHHHHHHHcCccCCCc
Q 010762 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (502)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 247 (502)
.+.++||.|+++.-+..+.+.+... ++.+..++++..... ........+..+|+|+|. . -...+++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~-----~~~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-V-----AARGIDIPD 98 (170)
Confidence 4568999999999999988887765 344444554433221 223333445678999993 1 223455667
Q ss_pred eEEEEE
Q 010762 248 LKILVY 253 (502)
Q Consensus 248 ~~~lVl 253 (502)
+++||.
T Consensus 99 ~~~Vi~ 104 (170)
T 2yjt_D 99 VSHVFN 104 (170)
Confidence 777765
No 274
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.97 E-value=1.9 Score=41.36 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=27.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~L 183 (502)
.++++.|+||+|||...-.-+.... ..+.+++|+=|..+.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREY---MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEESSCCS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEEEeCCcCH
Confidence 7899999999999986443333322 235578888787653
No 275
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=74.95 E-value=1.8 Score=38.13 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=29.6
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHH
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRK 193 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~ 193 (502)
+.-+++.|++|+|||...+-.+.+.+.. .+..+++++-. +-..++.+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeeccc-CCHHHHHHHHHH
Confidence 4789999999999997654433332221 23356666533 234455544443
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=74.89 E-value=1.3 Score=37.16 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=15.2
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.|++|||||...
T Consensus 6 ~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 68999999999999864
No 277
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.88 E-value=1.5 Score=40.87 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+-++|.||||||||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999864
No 278
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=74.87 E-value=3 Score=38.61 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=32.4
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCC---------CCC----CeEEEecCcHHH-HHHHHHHHHHh
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN---------LKA----PQALCICPTREL-AIQNLEVLRKM 194 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~---------~~~----~~~lil~Pt~~L-a~q~~~~~~~~ 194 (502)
+.-+++.|++|+|||...+-.+.+..... ..+ .+++++.-...+ ..++.+.+.++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 37899999999999987555444422211 112 577877744322 34444444443
No 279
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=74.85 E-value=21 Score=30.12 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=81.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcC----ccccCCCCCCCCEEEEe
Q 010762 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD----VLARGFDQQQVNLIVNY 425 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~----~~~~Gldi~~v~~VI~~ 425 (502)
..+++++++.......+.+.+.+.+..+..+.+++.. --.....+ ....+|+|+-. .+..-+++| ||.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----VV~- 75 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIP----SIS- 75 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----EEE-
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCC----EEE-
Confidence 3577888888887777777666667777777777643 22334444 56678998853 333445544 333
Q ss_pred cCCCCCCCCCCCCccchhhhhcccccCCCcceEEEEeeCCccHHHHHHHHHHhCCcccccc-CCH---HHHHHHHHHcC
Q 010762 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVR-NSD---EDFKAALKAAG 500 (502)
Q Consensus 426 ~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~---~~~~~~~~~~~ 500 (502)
.+ .|..++++.+-++.+.+. ..+++-+ ..-..-+..+.+.++..+..+. .+. +...+.+++.|
T Consensus 76 -I~--------~s~~Dil~al~~a~~~~~-kIavvg~--~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G 142 (196)
T 2q5c_A 76 -IK--------VTRFDTMRAVYNAKRFGN-ELALIAY--KHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTEN 142 (196)
T ss_dssp -EC--------CCHHHHHHHHHHHGGGCS-EEEEEEE--SSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTT
T ss_pred -Ec--------CCHhHHHHHHHHHHhhCC-cEEEEeC--cchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCC
Confidence 33 567778888888877654 2333333 2333345789999999988776 444 44444444444
No 280
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=74.60 E-value=1.4 Score=40.63 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+-++|.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 56889999999999863
No 281
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.43 E-value=20 Score=33.98 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=62.3
Q ss_pred EEecCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 010762 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~---~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (502)
.+..+....|.......+..... ...++||.++++.-+..+++.+... +..+..++|+...... ...+..
T Consensus 81 lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 157 (414)
T 3eiq_A 81 IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQM 157 (414)
T ss_dssp EECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTT
T ss_pred EEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhc
Confidence 33444455555443322333222 4678999999999999888888654 6788888888764433 345556
Q ss_pred CCCeEEEEcC-----ccc-cCCCCCCCCEEEE
Q 010762 399 GLTQVLISTD-----VLA-RGFDQQQVNLIVN 424 (502)
Q Consensus 399 ~~~~iLv~T~-----~~~-~Gldi~~v~~VI~ 424 (502)
+...|+|+|. .+. ..++...+++||.
T Consensus 158 ~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp TCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 7789999994 222 3356667888775
No 282
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=74.23 E-value=2.8 Score=35.28 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=49.9
Q ss_pred CCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCccc--ccCCCCCCCeEE
Q 010762 150 GSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVV 227 (502)
Q Consensus 150 GsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Il 227 (502)
.+.|.. +++-++... ..+.++||.|+++.-+..+...+... ++.+..+.++....... ......+...|+
T Consensus 29 ~~~K~~-~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHH-HHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHH-HHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 345644 355555443 24568999999999999998888764 45555565544332211 112223457899
Q ss_pred EeCchHHHHHHHcCccCCCceEEEEE
Q 010762 228 IGTPGTIKKWMSAKKLGFSRLKILVY 253 (502)
Q Consensus 228 v~Tp~~l~~~l~~~~~~~~~~~~lVl 253 (502)
|+|. . -...+++..+++||.
T Consensus 101 vaT~-~-----~~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATA-V-----AARGLDISNVKHVIN 120 (185)
T ss_dssp EEEC------------CCCSBSEEEE
T ss_pred EEcC-h-----hhcCCCcccCCEEEE
Confidence 9993 1 223556777887776
No 283
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=74.22 E-value=1.5 Score=36.51 Aligned_cols=17 Identities=24% Similarity=0.392 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+-+++.|++|||||...
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999863
No 284
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=74.06 E-value=2.3 Score=36.38 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=17.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLS 163 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~ 163 (502)
.-.++.|+.|||||+....-++.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999975444444
No 285
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=74.03 E-value=5 Score=34.21 Aligned_cols=97 Identities=19% Similarity=0.145 Sum_probs=55.2
Q ss_pred EEEecCChHHHHHHHHHHHHHhc------ccCCcEEEEcCChhhHHH-HHHHHHh---CCCcEEEecCCCCHHHHHHHHH
Q 010762 325 YKVYCPDELAKVMVIRDRIFELG------EKMGQTIIFVRTKNSASA-LHKALKD---FGYEVTTIMGATIQEERDKIVK 394 (502)
Q Consensus 325 ~~~~~~~~~~k~~~l~~~l~~~~------~~~~~~lVF~~s~~~~~~-l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~ 394 (502)
..+..+....|.......+.... ....++||+|++..-+.. +.+.+.. .++.+..++|+.....+...+.
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 130 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV 130 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc
Confidence 34555666666554433332221 236799999999988777 5555443 3678999998764332211111
Q ss_pred HHHcCCCeEEEEcCcc-----cc-------CCCCCCCCEEEEe
Q 010762 395 EFKDGLTQVLISTDVL-----AR-------GFDQQQVNLIVNY 425 (502)
Q Consensus 395 ~f~~~~~~iLv~T~~~-----~~-------Gldi~~v~~VI~~ 425 (502)
....|+|+|.-. .. ++.+.++++||.-
T Consensus 131 ----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiD 169 (216)
T 3b6e_A 131 ----KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 169 (216)
T ss_dssp ----HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEET
T ss_pred ----cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEE
Confidence 246799998421 12 2566677887753
No 286
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=74.01 E-value=2.6 Score=41.36 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.||+|+|||..+
T Consensus 64 ~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 78999999999999863
No 287
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.00 E-value=3.4 Score=38.98 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=15.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.||+|+|||...
T Consensus 71 ~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 68999999999999863
No 288
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.96 E-value=1.4 Score=40.53 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.5
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+-++++||||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 46889999999999863
No 289
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.92 E-value=1.5 Score=37.44 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=15.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.|++|||||...
T Consensus 26 ~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 78999999999999863
No 290
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=73.79 E-value=1.5 Score=37.51 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-++++|++|||||..
T Consensus 13 ~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 8899999999999985
No 291
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=73.74 E-value=2.2 Score=36.77 Aligned_cols=32 Identities=22% Similarity=0.060 Sum_probs=22.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
.-+++.|++|+|||......+. ..+..++++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~------~~~~~v~~i~ 52 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL------LSGKKVAYVD 52 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH------HHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH------HcCCcEEEEE
Confidence 7899999999999986544333 1344666665
No 292
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=73.71 E-value=36 Score=27.90 Aligned_cols=87 Identities=24% Similarity=0.273 Sum_probs=60.4
Q ss_pred EecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Q 010762 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS 406 (502)
Q Consensus 327 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~ 406 (502)
..+.........+...+.......+.+-|.|++..++..+...|...|+.+..+.++.. ...-.|.|+
T Consensus 38 ~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~ 105 (174)
T 3dmn_A 38 VVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVV 105 (174)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEE
T ss_pred EEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEE
Confidence 33344444444444444432224577899999999999999999999998888776541 123469999
Q ss_pred cCccccCCCCCCCCEEEEecCC
Q 010762 407 TDVLARGFDQQQVNLIVNYDPP 428 (502)
Q Consensus 407 T~~~~~Gldi~~v~~VI~~~~p 428 (502)
|--.+-|+.+ ++||.+++.
T Consensus 106 t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 106 PSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp EGGGCTTCCE---EEEEEETCB
T ss_pred EccccCCcCC---CEEEEecCC
Confidence 9999999986 677777654
No 293
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=73.70 E-value=6.3 Score=40.90 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=50.5
Q ss_pred CcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----cccC-C-CCCCC
Q 010762 351 GQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LARG-F-DQQQV 419 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~~G-l-di~~v 419 (502)
+++||.++++.-+...+..+... ++.+..++|+.+...+...+ . ....|+|+|.- +..| + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999888888877654 78999999988643322222 1 24689999942 2233 3 56678
Q ss_pred CEEEEec
Q 010762 420 NLIVNYD 426 (502)
Q Consensus 420 ~~VI~~~ 426 (502)
++||.-.
T Consensus 138 ~~vViDE 144 (696)
T 2ykg_A 138 TLMIFDE 144 (696)
T ss_dssp SEEEEET
T ss_pred cEEEEeC
Confidence 8888643
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=73.63 E-value=1.4 Score=36.41 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-+++.|++|||||...
T Consensus 2 ~~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFA 18 (179)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999864
No 295
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.39 E-value=2.8 Score=41.59 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=21.5
Q ss_pred HHHHhhhhhhcCCCCccEEEECcCCCcchhH
Q 010762 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 126 ~~Q~~~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
..-..++-.+..+ .++++.||+|+|||..
T Consensus 29 ~~i~~l~~al~~~--~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 29 HAIRLCLLAALSG--ESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHT--CEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHhcC--CeeEeecCchHHHHHH
Confidence 3334444555566 8999999999999985
No 296
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=73.38 E-value=3.7 Score=37.70 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|+|||+.+
T Consensus 26 ~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVA 42 (304)
T ss_dssp SCEEEESCTTSCHHHHH
T ss_pred CcEEEECCCCchHHHHH
Confidence 78999999999999863
No 297
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=73.15 E-value=1.6 Score=37.31 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+++.|++|||||..
T Consensus 7 ~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CEEEEECSTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 298
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.98 E-value=3.5 Score=47.03 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=56.1
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKR 219 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
++-+.+.+|.|||||...+-.+-+.. ..+..++++.+-.+|.... +++++ +..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~---~~g~~~~~i~~e~~~~~~~---~~~~G----v~~----------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY---ARKLG----VDI----------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHH---HHHTT----CCG-----------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEecCCCCCHHH---HHHcC----CCH-----------------
Confidence 48899999999999998555443322 2466788888876665543 33333 211
Q ss_pred CCCCCeEEEeCchHHHHHHHc--CccCCCceEEEEEeCchhhhc
Q 010762 220 PPVTAQVVIGTPGTIKKWMSA--KKLGFSRLKILVYDEADHMLD 261 (502)
Q Consensus 220 ~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lVlDEah~l~~ 261 (502)
-+++++.|..--+++.- .-+.-..+++||+|.+.-+..
T Consensus 1484 ----~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 ----DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 13677777543322221 111223477899999987765
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=72.95 E-value=1.3 Score=37.24 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.|++|||||..
T Consensus 10 ~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTI 25 (191)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7899999999999985
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=72.75 E-value=1.6 Score=40.04 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+.+.||+|||||..
T Consensus 127 e~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSML 142 (305)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 8899999999999984
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=72.69 E-value=1.4 Score=39.30 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.7
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
-++++|++|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999853
No 302
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=72.69 E-value=1.5 Score=37.34 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-+.+.||+|+|||..
T Consensus 5 ~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTL 20 (198)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 303
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=72.30 E-value=1.7 Score=36.54 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=14.2
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5688999999999985
No 304
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=72.18 E-value=3.9 Score=37.75 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||+|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 7899999999999985
No 305
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.13 E-value=23 Score=32.13 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-+++.+++|+|||...
T Consensus 99 ~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEEECSSCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 77888999999999853
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=72.07 E-value=2.2 Score=36.66 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-+++.||+|+|||..
T Consensus 9 ~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 7899999999999985
No 307
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=72.03 E-value=1.9 Score=40.08 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=20.1
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 34455677446788999999999987
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=72.02 E-value=1.7 Score=37.00 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+.+.||+|||||..
T Consensus 8 ~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSL 23 (205)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 7889999999999985
No 309
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.93 E-value=5.9 Score=35.42 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=29.8
Q ss_pred HHHHHHHhhCCCCCCcHHHHh-hhhhhcCCC---CccEEEECcCCCcchhHhH
Q 010762 110 ELLKGLYVEMKFQKPSKIQAI-SLPMILTPP---YRNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 110 ~l~~~l~~~~g~~~p~~~Q~~-~i~~il~~~---~~~~lv~a~TGsGKTl~~l 158 (502)
.+.+-|.. .|+. |++-. ++..++.+. .+.+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~-qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILEL-NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHH-TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHH-cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 55555543 6766 55533 345556653 2369999999999999754
No 310
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=71.76 E-value=2.1 Score=40.11 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=21.4
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+..++.|-+-.++..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 566677884456888999999999874
No 311
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=71.74 E-value=2.3 Score=37.43 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=19.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||+|||||. ++-++..+..
T Consensus 32 e~~~iiG~nGsGKST--Ll~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKST--MLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhcCCC
Confidence 889999999999998 5556655543
No 312
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=71.71 E-value=1.7 Score=40.91 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=20.8
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++.-|+||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 45666778556788999999999987
No 313
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.69 E-value=1.9 Score=36.98 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=26.7
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhhhhhhcCCC--CccEEEECcCCCcchhHh
Q 010762 109 PELLKGLYVEMKFQKPSKIQAISLPMILTPP--YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 109 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~~~--~~~~lv~a~TGsGKTl~~ 157 (502)
..+.+-|.- .| ..+... ..++..++.+. .+.+++.||+|+|||..+
T Consensus 28 ~~I~~~l~y-q~-~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRY-QQ-IEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHH-TT-CCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHH-cC-cCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 345555532 23 224344 33444444442 146999999999999864
No 314
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.60 E-value=1.6 Score=41.27 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||..+
T Consensus 52 ~~vll~GppGtGKT~la 68 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999863
No 315
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=71.50 E-value=11 Score=35.42 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=52.8
Q ss_pred CCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCc
Q 010762 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (502)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 247 (502)
.+.++||.|+++.-+..+++.++.. +..+..++++...... .......+..+|+|+|. +-...+++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 4568999999999999999888765 3445555555432211 11222334578999995 2345678899
Q ss_pred eEEEEEeCchh
Q 010762 248 LKILVYDEADH 258 (502)
Q Consensus 248 ~~~lVlDEah~ 258 (502)
+++||.-....
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99998765543
No 316
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=71.49 E-value=1.8 Score=35.71 Aligned_cols=16 Identities=38% Similarity=0.572 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.|++|||||..
T Consensus 5 ~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999985
No 317
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=71.45 E-value=10 Score=37.53 Aligned_cols=42 Identities=26% Similarity=0.184 Sum_probs=25.1
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC--cHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP--TRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P--t~~La~ 185 (502)
+.+++++++|+|||....--+ ..+.. .+.+++++.. .+..+.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA-~~l~~--~G~kVllVd~D~~r~aa~ 145 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA-YYYQR--KGWKTCLICADTFRAGAF 145 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-HHHHH--TTCCEEEEEECCSSSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHh--CCCeEEEEeccccchhHH
Confidence 678899999999998643322 22221 2445666653 344443
No 318
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=71.36 E-value=2.2 Score=40.02 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=21.5
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+..++.|-+-.++..|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 567778884456788999999999874
No 319
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.15 E-value=1.7 Score=36.02 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.6
Q ss_pred ccEEEECcCCCcchhHhH
Q 010762 141 RNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l 158 (502)
.-+.+.||+|||||..+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 789999999999998643
No 320
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=71.11 E-value=20 Score=34.13 Aligned_cols=70 Identities=9% Similarity=0.101 Sum_probs=51.3
Q ss_pred CcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----cc-cCCCCCCCC
Q 010762 351 GQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LA-RGFDQQQVN 420 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~-~Gldi~~v~ 420 (502)
.++||.++++.-+..+++.+.. .++.+..++|+.+....... + .....|+|+|.- +. ..+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---L-ERGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---H-TTCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---h-hCCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5799999999999998888765 46889999999886654332 2 235689999952 22 235677888
Q ss_pred EEEE
Q 010762 421 LIVN 424 (502)
Q Consensus 421 ~VI~ 424 (502)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 321
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=71.08 E-value=1.7 Score=39.80 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||...
T Consensus 51 ~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 78999999999999863
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=71.06 E-value=1.8 Score=36.33 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999863
No 323
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=70.88 E-value=3.5 Score=41.37 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=17.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHh
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLS 163 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~ 163 (502)
.+++|.|.||||||.+.-..++.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999974433333
No 324
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=70.58 E-value=8.3 Score=30.84 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=31.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCC-cEEEecCCCC
Q 010762 348 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 385 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 385 (502)
....+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3567899999998889999999999999 5999999874
No 325
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=70.57 E-value=5 Score=44.13 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=51.6
Q ss_pred HHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEc-----CccccCCC-CC
Q 010762 344 FELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST-----DVLARGFD-QQ 417 (502)
Q Consensus 344 ~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T-----~~~~~Gld-i~ 417 (502)
......++++||.+|++.-+...++.|....-.+..++|+++ .++...|+|+| +.+.++-. +.
T Consensus 221 ~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~ 289 (1108)
T 3l9o_A 221 AQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMR 289 (1108)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHH
T ss_pred HHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccc
Confidence 333346789999999999999999999887668999999886 24567899998 33444432 45
Q ss_pred CCCEEEE
Q 010762 418 QVNLIVN 424 (502)
Q Consensus 418 ~v~~VI~ 424 (502)
++.+||.
T Consensus 290 ~l~lVVI 296 (1108)
T 3l9o_A 290 EVAWVIF 296 (1108)
T ss_dssp HEEEEEE
T ss_pred cCCEEEE
Confidence 6667664
No 326
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=70.55 E-value=3.6 Score=34.77 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=53.5
Q ss_pred CcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEE
Q 010762 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVI 228 (502)
Q Consensus 151 sGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv 228 (502)
..|.. +++-++.. .+.++||.|+++.-+..+...+... ++.+..+.+....... ...........|+|
T Consensus 40 ~~K~~-~L~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 109 (191)
T 2p6n_A 40 EAKMV-YLLECLQK-----TPPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLV 109 (191)
T ss_dssp GGHHH-HHHHHHTT-----SCSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHH-HHHHHHHh-----CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 45643 34444433 2347999999999999999888765 4555556555433211 11122234578999
Q ss_pred eCchHHHHHHHcCccCCCceEEEEE
Q 010762 229 GTPGTIKKWMSAKKLGFSRLKILVY 253 (502)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~lVl 253 (502)
+|. . ....+++..+++||.
T Consensus 110 aT~-----~-~~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 110 ATD-----V-ASKGLDFPAIQHVIN 128 (191)
T ss_dssp ECH-----H-HHTTCCCCCCSEEEE
T ss_pred EcC-----c-hhcCCCcccCCEEEE
Confidence 993 1 224567888888876
No 327
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.22 E-value=2.1 Score=41.00 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=21.3
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+..++.|-+-.++..|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 456667885456888999999999874
No 328
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=70.16 E-value=2.1 Score=39.74 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=13.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+++.|+.|||||..
T Consensus 5 ~v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEEESSSSSCHHH
T ss_pred cEEEEEecCCCCHHHH
Confidence 3578999999999985
No 329
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=70.11 E-value=2.1 Score=40.34 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=19.6
Q ss_pred hhhhcCCCCccEEEECcCCCcchhH
Q 010762 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..++.|-+-.++..|+||||||.+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceE
Confidence 3455677446788999999999987
No 330
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=70.10 E-value=2.2 Score=40.07 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=19.6
Q ss_pred hhhhcCCCCccEEEECcCCCcchhH
Q 010762 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..++.|-+-.++..|+||||||.+
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 3455677546788899999999987
No 331
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.86 E-value=2.8 Score=35.72 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-+++.||+|+|||..
T Consensus 20 ~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 20 KTLVLIGASGVGRSHI 35 (197)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECcCCCCHHHH
Confidence 8899999999999985
No 332
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.82 E-value=1.9 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.5
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-+++.|++|||||...
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 46899999999999863
No 333
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=69.75 E-value=2.2 Score=39.98 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=19.5
Q ss_pred hhhhcCCCCccEEEECcCCCcchhH
Q 010762 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..++.|-+-.++..|+||||||.+
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEE
Confidence 3445677556788999999999987
No 334
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=69.67 E-value=3.7 Score=36.28 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||+|||||. ++-++..+..
T Consensus 29 e~~~i~G~nGsGKST--Ll~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKST--IFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 889999999999998 4555655543
No 335
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=69.64 E-value=2 Score=36.00 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=15.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||.+.
T Consensus 11 ~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 11 INILITGTPGTGKTSMA 27 (184)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999864
No 336
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=69.60 E-value=3.8 Score=36.82 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=20.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||+|||||. ++-++..+..
T Consensus 38 e~~~liG~nGsGKST--Ll~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKST--LLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHH--HHHHHTSSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhcCCC
Confidence 889999999999998 5556666544
No 337
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.59 E-value=2.1 Score=36.09 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=14.1
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 338
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.56 E-value=2 Score=41.09 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=19.2
Q ss_pred hhhcCCCCccEEEECcCCCcchhHh
Q 010762 133 PMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
..++.|-+-.++..|+||||||.+.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 4456774456888999999999873
No 339
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.52 E-value=2 Score=35.37 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=13.9
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999863
No 340
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=68.99 E-value=4.1 Score=37.62 Aligned_cols=48 Identities=17% Similarity=0.020 Sum_probs=29.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (502)
.-+++.|++|+|||...+-.+...... +..+++++-- .-..|+...+.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHH
Confidence 789999999999997654444443322 2467777633 23344444443
No 341
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=68.92 E-value=2 Score=40.24 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=19.1
Q ss_pred hhhhcCCCCccEEEECcCCCcchhH
Q 010762 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..++.|-+-.++..|+||||||.+
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 3445667445688899999999987
No 342
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=68.90 E-value=2.4 Score=39.82 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=19.7
Q ss_pred hhhhcCCCCccEEEECcCCCcchhH
Q 010762 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..++.|-+-.++..|+||||||.+
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceee
Confidence 4455677546788999999999987
No 343
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=68.79 E-value=2.6 Score=40.09 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.0
Q ss_pred hhhcCCCCccEEEECcCCCcchhH
Q 010762 133 PMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
..++.|-+-.++..|+||||||.+
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeE
Confidence 445677445688899999999987
No 344
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=68.79 E-value=2.4 Score=39.71 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=20.2
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+..++.|-+-.++..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 344556774456888999999999873
No 345
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=68.75 E-value=2.5 Score=39.26 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=20.1
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 44556677445688999999999987
No 346
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=68.62 E-value=1.6 Score=40.67 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.++++.||+|+|||..
T Consensus 47 ~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 47 GHILLEGVPGLAKTLS 62 (331)
T ss_dssp CCEEEESCCCHHHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 7899999999999985
No 347
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=68.35 E-value=2.2 Score=40.29 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=19.6
Q ss_pred hhhhcCCCCccEEEECcCCCcchhH
Q 010762 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..++.|-+-.++..|+||||||.+
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEe
Confidence 4455777546788899999999987
No 348
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=68.30 E-value=2.6 Score=39.05 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.++++||||||||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56899999999999864
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=68.05 E-value=1.9 Score=36.13 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.2
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 5 ~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 350
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=67.95 E-value=7.2 Score=30.98 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=33.4
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 010762 347 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (502)
Q Consensus 347 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (502)
.....+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 445678999999999999999999999985 888999864
No 351
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=67.91 E-value=2.6 Score=39.77 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.1
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 34555777546788899999999986
No 352
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=67.91 E-value=2.4 Score=39.73 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=19.6
Q ss_pred hhhhcCCCCccEEEECcCCCcchhH
Q 010762 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+..++.|-+-.++..|+||||||.+
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeE
Confidence 4455677446788899999999987
No 353
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=67.84 E-value=8.1 Score=28.82 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.2
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCCH
Q 010762 347 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQ 386 (502)
Q Consensus 347 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~ 386 (502)
.....+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 55 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 55 NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 346788999999988999999999999994 8899998743
No 354
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=67.80 E-value=9.6 Score=41.16 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=58.8
Q ss_pred EEecCChHHHHHHHHHHHHHhccc-----CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHH
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEK-----MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEF 396 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f 396 (502)
.+..+....|.......+...... ++++||.++++.-+...+..+... ++.+..+||+.+...+...+.
T Consensus 267 ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~-- 344 (936)
T 4a2w_A 267 LICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI-- 344 (936)
T ss_dssp EEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH--
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc--
Confidence 444555666665544434444332 678999999999888887777654 899999999986554322221
Q ss_pred HcCCCeEEEEcCc-----cccC-C-CCCCCCEEEEe
Q 010762 397 KDGLTQVLISTDV-----LARG-F-DQQQVNLIVNY 425 (502)
Q Consensus 397 ~~~~~~iLv~T~~-----~~~G-l-di~~v~~VI~~ 425 (502)
+...|+|+|.- +.++ + .+..+++||.-
T Consensus 345 --~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViD 378 (936)
T 4a2w_A 345 --EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 378 (936)
T ss_dssp --HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEE
T ss_pred --cCCCEEEecHHHHHHHHHcCccccccCCCEEEEE
Confidence 13579999932 2222 3 45677888853
No 355
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=67.77 E-value=2.4 Score=36.32 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.9
Q ss_pred hcCCCCccEEEECcCCCcchhH
Q 010762 135 ILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 135 il~~~~~~~lv~a~TGsGKTl~ 156 (502)
+-.| .-+.+.||+|+|||..
T Consensus 17 i~~G--ei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 17 AAVG--RVVVLSGPSAVGKSTV 36 (207)
T ss_dssp --CC--CEEEEECSTTSSHHHH
T ss_pred CCCC--CEEEEECCCCCCHHHH
Confidence 4456 8899999999999985
No 356
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=67.76 E-value=2.5 Score=36.66 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
+-+.+.||+|+|||..
T Consensus 24 ~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 8899999999999984
No 357
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=67.75 E-value=25 Score=26.16 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=35.9
Q ss_pred cCCcEEEEcC------ChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 010762 349 KMGQTIIFVR------TKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396 (502)
Q Consensus 349 ~~~~~lVF~~------s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f 396 (502)
...+++||.. ....|.++.+.|.+.|+....++=...+..+..+.+..
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~ 69 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS 69 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH
Confidence 5678999988 48999999999999998776665445555555555443
No 358
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.58 E-value=2.3 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|+.|||||...
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 78999999999999853
No 359
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.14 E-value=2.8 Score=39.10 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-++|+||||||||...
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 46899999999999864
No 360
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.13 E-value=2.5 Score=40.63 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=20.5
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeE
Confidence 45566778546688899999999987
No 361
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=67.09 E-value=2.5 Score=39.82 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=20.1
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 45556778445678889999999987
No 362
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.99 E-value=2.6 Score=35.90 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.|++|||||..
T Consensus 30 ~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 7899999999999985
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=66.84 E-value=3.7 Score=37.73 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=22.3
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
+.-+.+.||+|+|||.. +..+..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~~-~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQN-LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHHT-TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHHh-cCCEEEEEe
Confidence 37889999999999985 3333333222 234555543
No 364
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.82 E-value=3.3 Score=37.41 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||+|||||. ++-++..+..
T Consensus 35 e~~~iiGpnGsGKST--Ll~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKST--LFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHHcCCC
Confidence 789999999999998 5556655543
No 365
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=66.81 E-value=2.5 Score=40.13 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred hhhhcCCCCccEEEECcCCCcchhHh
Q 010762 132 LPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 132 i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
+..++.|-+-.++..|+||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34556774456888999999999873
No 366
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=66.70 E-value=2.6 Score=39.59 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=20.2
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 44556778445678899999999987
No 367
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=66.53 E-value=4 Score=36.51 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=19.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||+|||||. ++-++..+..
T Consensus 47 e~~~i~G~nGsGKST--Ll~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKST--IAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhccCC
Confidence 889999999999998 4555655543
No 368
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=66.50 E-value=2.7 Score=36.55 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+++.||+|+|||..
T Consensus 17 ~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSL 32 (219)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 8899999999999985
No 369
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=66.43 E-value=25 Score=32.05 Aligned_cols=92 Identities=11% Similarity=0.140 Sum_probs=60.7
Q ss_pred EEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCC
Q 010762 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGL 400 (502)
Q Consensus 325 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~~~ 400 (502)
..+..+....|.......+.. .+.++||.++++.-+..+++.+... +..+..++|+.+....... +. .
T Consensus 34 ~lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~ 105 (337)
T 2z0m_A 34 VVVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--N 105 (337)
T ss_dssp EEEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--T
T ss_pred EEEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--C
Confidence 344445555555543332222 3678999999999999998888753 5789999999887654332 22 3
Q ss_pred CeEEEEcCcc-----c-cCCCCCCCCEEEE
Q 010762 401 TQVLISTDVL-----A-RGFDQQQVNLIVN 424 (502)
Q Consensus 401 ~~iLv~T~~~-----~-~Gldi~~v~~VI~ 424 (502)
..|+|+|.-. . ..+++..+++||.
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 106 ADIVVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp CSEEEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 6899999421 2 2345667788775
No 370
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=66.25 E-value=2.2 Score=40.34 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=19.8
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 44556677445688899999999987
No 371
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=66.24 E-value=3.1 Score=35.37 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999864
No 372
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=66.16 E-value=2.4 Score=39.97 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=20.1
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 44556777445688899999999987
No 373
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=66.12 E-value=3.7 Score=35.46 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=18.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||.|||||. ++-++..+.
T Consensus 36 e~~~iiG~NGsGKST--Llk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTT--LLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 889999999999998 444555543
No 374
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.12 E-value=2.5 Score=40.20 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||..+
T Consensus 73 ~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 68999999999999863
No 375
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=65.93 E-value=4.5 Score=31.54 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.7
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 010762 347 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (502)
Q Consensus 347 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (502)
.....+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 346678999999988999999999999985 889999974
No 376
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=65.67 E-value=2.3 Score=36.43 Aligned_cols=22 Identities=27% Similarity=0.095 Sum_probs=17.3
Q ss_pred hhhcCCCCccEEEECcCCCcchhH
Q 010762 133 PMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 133 ~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
|.+-.+ .-+.+.|++|||||..
T Consensus 16 ~~~~~~--~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 16 PRGSKT--FIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCSCCC--EEEEEEESTTSSHHHH
T ss_pred ccCCCC--eEEEEECCCCCCHHHH
Confidence 444445 7889999999999985
No 377
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=65.65 E-value=2.8 Score=35.66 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57899999999999864
No 378
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.56 E-value=3.2 Score=40.81 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.8
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
..++++.||+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 378999999999999864
No 379
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=65.48 E-value=2.7 Score=34.50 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.7
Q ss_pred ccEEEECcCCCcchhHhH
Q 010762 141 RNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l 158 (502)
+++++.|+.|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 689999999999998643
No 380
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=65.44 E-value=5.3 Score=31.56 Aligned_cols=38 Identities=18% Similarity=0.409 Sum_probs=33.7
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCC-cEEEecCCCC
Q 010762 348 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 385 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 385 (502)
....+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 4678899999999999999999999999 5899999974
No 381
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=65.36 E-value=2.6 Score=35.42 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999864
No 382
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=65.35 E-value=3.7 Score=36.39 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|||||. ++-++..+.
T Consensus 36 e~~~i~G~nGsGKST--Ll~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKST--LTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 889999999999998 455565554
No 383
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=65.18 E-value=2.4 Score=35.67 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-+++.||+|||||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 56789999999999853
No 384
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=65.13 E-value=3.2 Score=39.32 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=20.6
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 45666778445688899999999987
No 385
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=65.05 E-value=3.8 Score=31.72 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=32.9
Q ss_pred ccCCcEEEEcCChhh--HHHHHHHHHhCCCcEEEecCCCC
Q 010762 348 EKMGQTIIFVRTKNS--ASALHKALKDFGYEVTTIMGATI 385 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~--~~~l~~~L~~~~~~~~~l~~~~~ 385 (502)
....+++|||.+-.. +..++..|...|+++..+.|++.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 356789999999877 88999999999999999999874
No 386
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=64.94 E-value=26 Score=26.25 Aligned_cols=47 Identities=9% Similarity=0.100 Sum_probs=35.5
Q ss_pred cCCcEEEEc------CChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 010762 349 KMGQTIIFV------RTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395 (502)
Q Consensus 349 ~~~~~lVF~------~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~ 395 (502)
...+++||. ++...|..+.+.|...|+....+.=...+..+..+.+.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 567899998 57889999999999999877666555556666555443
No 387
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=64.91 E-value=20 Score=37.67 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=51.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc------ccC-----
Q 010762 349 KMGQTIIFVRTKNSASALHKALK----DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL------ARG----- 413 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~------~~G----- 413 (502)
.+..++|.++|+.-|...+..+. .+|+.+.++.|+++...|.... ...|+|+|+.- ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 45689999999999888777664 4589999999999976554432 36899999531 222
Q ss_pred --CCCCCCCEEEE
Q 010762 414 --FDQQQVNLIVN 424 (502)
Q Consensus 414 --ldi~~v~~VI~ 424 (502)
+...++.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 45567777774
No 388
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=64.85 E-value=2.6 Score=39.92 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=19.8
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhH
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~ 156 (502)
.+..++.|-+-.++..|+||||||.+
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 34455667446788999999999987
No 389
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=64.84 E-value=4.7 Score=35.77 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.5
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||.|+|||. ++-++..+..
T Consensus 27 e~~~liG~NGsGKST--Llk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKST--LLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCCC
Confidence 788999999999998 4555555543
No 390
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=64.66 E-value=2.6 Score=38.67 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47999999999999863
No 391
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=64.60 E-value=2.8 Score=34.99 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.2
Q ss_pred cEEEECcCCCcchhH
Q 010762 142 NLIAQARNGSGKTTC 156 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (502)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 392
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=64.59 E-value=5.3 Score=31.90 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=32.6
Q ss_pred cCCcEEEEcCCh--hhHHHHHHHHHhCCCcEEEecCCCC
Q 010762 349 KMGQTIIFVRTK--NSASALHKALKDFGYEVTTIMGATI 385 (502)
Q Consensus 349 ~~~~~lVF~~s~--~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (502)
...+++|||.+- ..+..++..|...|+++..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 567899999997 5889999999999999999999974
No 393
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=64.57 E-value=3.6 Score=35.85 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=18.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||.|||||. ++-++..+.
T Consensus 31 e~~~iiG~nGsGKST--Ll~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKST--LLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 788999999999998 455555554
No 394
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=64.54 E-value=9.4 Score=28.64 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=33.4
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 010762 347 GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (502)
Q Consensus 347 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (502)
..+..+++|||.+-..+...+..|...|+....+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 346788999999999999999999999986688888874
No 395
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=64.40 E-value=2.5 Score=39.58 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.||+|+|||...
T Consensus 46 ~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCEEEECCGGGCTTHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 56999999999999863
No 396
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=64.37 E-value=4 Score=35.68 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=18.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||.|||||. ++-++..+.
T Consensus 35 e~~~i~G~nGsGKST--Ll~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTS--LLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 889999999999998 455555543
No 397
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=64.31 E-value=15 Score=28.73 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=32.9
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCC-cEEEecCCCC
Q 010762 348 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 385 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 385 (502)
....+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3567899999999889999999999999 4889999983
No 398
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=64.27 E-value=3 Score=40.45 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=20.4
Q ss_pred hhhhhcCCCCccEEEECcCCCcchhHh
Q 010762 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 131 ~i~~il~~~~~~~lv~a~TGsGKTl~~ 157 (502)
.+..++.|-+-.++..|+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344557774467889999999999873
No 399
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=64.22 E-value=3.1 Score=35.65 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.5
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+.+.||+|||||..
T Consensus 23 ~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTL 38 (208)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7889999999999974
No 400
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=64.22 E-value=2.8 Score=38.14 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-++++|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999863
No 401
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=63.83 E-value=3.2 Score=38.17 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=19.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||+|||||. ++-++..+..
T Consensus 81 e~vaivG~sGsGKST--Ll~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKST--ILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCchHHH--HHHHHHcCCC
Confidence 889999999999998 4556655543
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=63.72 E-value=3.4 Score=36.75 Aligned_cols=20 Identities=40% Similarity=0.383 Sum_probs=17.2
Q ss_pred cCCCCccEEEECcCCCcchhHh
Q 010762 136 LTPPYRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 136 l~~~~~~~lv~a~TGsGKTl~~ 157 (502)
+.| ..+++.|++|||||...
T Consensus 46 l~g--~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNG--RSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTT--CCEEEECSTTSCHHHHH
T ss_pred cCC--CEEEEECCCCCCHHHHH
Confidence 446 89999999999999863
No 403
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=63.70 E-value=4.1 Score=36.33 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=19.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|||||. ++-++..+.
T Consensus 34 e~~~liG~nGsGKST--Llk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKST--LINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 789999999999998 455555554
No 404
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.60 E-value=2.6 Score=36.88 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=10.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+.+.||+|||||..
T Consensus 28 ~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTV 43 (231)
T ss_dssp CEEEEECSCC----CH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 405
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=63.55 E-value=3.3 Score=39.58 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.4
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-++|.||||||||...
T Consensus 3 ~~i~i~GptgsGKttla 19 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEEECSSSSHHHHH
T ss_pred cEEEEECcchhhHHHHH
Confidence 45789999999999764
No 406
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=63.45 E-value=4.2 Score=36.41 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=18.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|||||. ++-++..+.
T Consensus 33 e~~~liG~nGsGKST--Llk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKST--FLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 788999999999998 455555554
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.38 E-value=4.3 Score=35.80 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.1
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|+|||. ++-++..+.
T Consensus 33 e~~~l~G~nGsGKST--Ll~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTT--TLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 789999999999998 455555554
No 408
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=63.24 E-value=2.7 Score=35.31 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-+++.|++|||||...
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999863
No 409
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=63.21 E-value=3.9 Score=35.94 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.9
Q ss_pred ccEEEECcCCCcchhHhH
Q 010762 141 RNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l 158 (502)
.-+.+.||+|+|||....
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 889999999999998643
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=63.14 E-value=4.3 Score=36.36 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=19.1
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||.|||||. ++-++..+.
T Consensus 51 ei~~liG~NGsGKST--Llk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKST--FLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEEcCCCCcHHH--HHHHHHcCC
Confidence 789999999999998 455565554
No 411
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=63.04 E-value=3.4 Score=35.09 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|+.|||||...
T Consensus 5 ~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 78999999999999963
No 412
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=63.03 E-value=4.2 Score=35.77 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhcc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
.-+.+.||+|||||. ++-++..+
T Consensus 32 e~~~i~G~nGsGKST--Ll~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSS--LLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcC
Confidence 889999999999998 44455444
No 413
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=62.95 E-value=3.3 Score=34.27 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.5
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.+++|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999863
No 414
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=62.82 E-value=21 Score=31.11 Aligned_cols=85 Identities=25% Similarity=0.211 Sum_probs=55.7
Q ss_pred EEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHHcCCCeEE
Q 010762 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLTQVL 404 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~~~~~iL 404 (502)
.+..+....|.......+... ..+++|+|++..-+..+.+.+...++. +..++|+.. ....|+
T Consensus 112 ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~ 175 (237)
T 2fz4_A 112 CIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLT 175 (237)
T ss_dssp EEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEE
T ss_pred EEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEE
Confidence 344455566666554433332 678999999999999999999888888 889998764 245788
Q ss_pred EEcC-ccccCCCC--CCCCEEEEec
Q 010762 405 ISTD-VLARGFDQ--QQVNLIVNYD 426 (502)
Q Consensus 405 v~T~-~~~~Gldi--~~v~~VI~~~ 426 (502)
|+|. .+...++. ..+++||.-.
T Consensus 176 v~T~~~l~~~~~~~~~~~~llIiDE 200 (237)
T 2fz4_A 176 VSTYDSAYVNAEKLGNRFMLLIFDE 200 (237)
T ss_dssp EEEHHHHHHTHHHHTTTCSEEEEEC
T ss_pred EEeHHHHHhhHHHhcccCCEEEEEC
Confidence 8883 22221111 2366666543
No 415
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=62.63 E-value=4.5 Score=36.08 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=18.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|||||. ++-++..+.
T Consensus 42 ei~~l~G~NGsGKST--Llk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTT--TLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred cEEEEECCCCCCHHH--HHHHHhcCC
Confidence 789999999999998 455555553
No 416
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=62.52 E-value=3.3 Score=35.20 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+++.|++|||||..
T Consensus 26 ~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTL 41 (200)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 8899999999999985
No 417
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=62.49 E-value=3.3 Score=35.36 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=15.2
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-+++.|+.|||||...
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 77999999999999863
No 418
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=62.39 E-value=4.5 Score=36.42 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=19.6
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~ 167 (502)
.-+.+.||+|||||. ++-++..+..
T Consensus 46 e~~~i~G~nGsGKST--Llk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKST--VAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 789999999999998 5555655543
No 419
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=62.33 E-value=28 Score=36.55 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=52.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-c-----c-------
Q 010762 349 KMGQTIIFVRTKNSASALHKALK----DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L-----A------- 411 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-~-----~------- 411 (502)
.+..++|.++|+.-|.+.++.+. .+|+.+.++.|+++...|.... ...|+++|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 46689999999999998877664 4589999999999987665432 2689999952 1 1
Q ss_pred cCCCCCCCCEEEE
Q 010762 412 RGFDQQQVNLIVN 424 (502)
Q Consensus 412 ~Gldi~~v~~VI~ 424 (502)
..++...+.++|.
T Consensus 197 ~~l~lr~~~~lVl 209 (844)
T 1tf5_A 197 EQMVQRPLHFAVI 209 (844)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhcccCCCEEEE
Confidence 2356677888774
No 420
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=62.05 E-value=3.2 Score=38.09 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=55.1
Q ss_pred CcchhHhHHHHHhccCCCCCCCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCccc--ccCCCCCCCeEEE
Q 010762 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVI 228 (502)
Q Consensus 151 sGKTl~~l~~il~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv 228 (502)
..|.-+ +.-++... .+.++||.|+++.-+..+++.+... ++.+..+++........ ......+..+|+|
T Consensus 13 ~~K~~~-L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLV 83 (300)
T 3i32_A 13 RGRLEV-LSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLV 83 (300)
T ss_dssp SSHHHH-HHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEE
T ss_pred HHHHHH-HHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Confidence 456543 34444332 3568999999999988888877654 45666666665433211 1222334578999
Q ss_pred eCchHHHHHHHcCccCCCceEEEEE
Q 010762 229 GTPGTIKKWMSAKKLGFSRLKILVY 253 (502)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~lVl 253 (502)
+|. +-...+++..+++||.
T Consensus 84 aT~------va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 84 ATD------VAARGLDIPQVDLVVH 102 (300)
T ss_dssp ECS------TTTCSTTCCCCSEEEE
T ss_pred Eec------hhhcCccccceeEEEE
Confidence 994 2335667888888875
No 421
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=61.94 E-value=5 Score=39.09 Aligned_cols=37 Identities=16% Similarity=0.008 Sum_probs=26.0
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
+.-+++.|++|+|||...+-.+.+.... +..+++++-
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 3789999999999998755544444332 456777763
No 422
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=61.87 E-value=10 Score=39.12 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=46.9
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEE
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (502)
+.++||+||++.-+..+++.++.. ++.+..+++. .....+........+|+|||. +-...+++. +++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~--eR~~v~~~F~~g~~~VLVaTd------v~e~GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK--SYDTEYPKCKNGDWDFVITTD------ISEMGANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS--SHHHHGGGGGTCCCSEEEECG------GGGTTCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH--HHHHHHHHHHCCCceEEEECc------hhhcceeeC-CcE
Confidence 568999999999999988888765 4566666652 222234444556789999995 233455666 666
Q ss_pred EE
Q 010762 251 LV 252 (502)
Q Consensus 251 lV 252 (502)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 423
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=61.64 E-value=3.7 Score=34.86 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 424
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=61.59 E-value=3.7 Score=34.21 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999864
No 425
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=61.54 E-value=4.8 Score=36.13 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=19.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|||||. ++-++..+.
T Consensus 34 e~~~liG~nGsGKST--Ll~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKST--LLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCC
Confidence 788999999999998 455555554
No 426
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=61.51 E-value=6.1 Score=31.15 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=32.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (502)
...+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 5678999999998999999999999995 999999874
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=61.48 E-value=3.9 Score=35.77 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 78999999999999864
No 428
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.44 E-value=6.1 Score=37.07 Aligned_cols=40 Identities=18% Similarity=-0.046 Sum_probs=24.6
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCCCC---CCeEEEecC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPNLK---APQALCICP 179 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~~~---~~~~lil~P 179 (502)
+.-+.+.||+|||||......+......... +..++++.-
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4789999999999998654433332111111 346677653
No 429
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=61.36 E-value=3.8 Score=37.56 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=22.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
.-+.+.||+|+|||.. +..+..+... .+.++++..
T Consensus 101 ~vi~lvG~nGsGKTTl--l~~Lag~l~~-~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTS--LGKLAHRLKN-EGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHH--HHHHHHHHHH-TTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHH--HHHHHHHHHH-cCCeEEEEe
Confidence 7899999999999985 3333333222 234555554
No 430
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=61.27 E-value=3.5 Score=33.20 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-.++.||+|+|||..
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578899999999985
No 431
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.24 E-value=3.4 Score=35.55 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.9
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 432
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=61.15 E-value=15 Score=38.21 Aligned_cols=93 Identities=14% Similarity=0.210 Sum_probs=63.9
Q ss_pred EEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 010762 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (502)
Q Consensus 325 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~~~~ 401 (502)
..+..+....|.......+......++++++.+|++.-+...++.++. .|+.+..++|+.....+ ..+..
T Consensus 43 ~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~ 115 (702)
T 2p6r_A 43 LLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDC 115 (702)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTC
T ss_pred EEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCC
Confidence 345666777777665443444333578999999999999999988843 47899999998765432 12467
Q ss_pred eEEEEcC-----ccccCCC-CCCCCEEEE
Q 010762 402 QVLISTD-----VLARGFD-QQQVNLIVN 424 (502)
Q Consensus 402 ~iLv~T~-----~~~~Gld-i~~v~~VI~ 424 (502)
+|+|+|. .+..+.. +.++++||.
T Consensus 116 ~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 116 DIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp SEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 8999995 2333333 567888885
No 433
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=61.03 E-value=5.8 Score=35.48 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=18.7
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||.|||||. ++-++..+.
T Consensus 31 e~~~i~G~NGsGKST--Llk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTT--LLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred EEEEEECCCCCCHHH--HHHHHhCCC
Confidence 889999999999998 445555443
No 434
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=60.90 E-value=3.8 Score=33.66 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+.+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999864
No 435
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=60.74 E-value=5 Score=36.31 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=18.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|+|||. ++-++..+.
T Consensus 48 e~~~liG~NGsGKST--Llk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTT--LLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCC
Confidence 789999999999998 455555543
No 436
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=60.65 E-value=4.6 Score=35.94 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=18.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|||||. ++-++..+.
T Consensus 32 e~~~l~G~nGsGKST--Ll~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKST--LLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 788999999999998 455555554
No 437
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.54 E-value=3.7 Score=34.55 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999863
No 438
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.35 E-value=4.5 Score=34.66 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999853
No 439
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=60.34 E-value=3.5 Score=35.43 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=13.9
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 440
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=60.32 E-value=7.3 Score=35.99 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=13.6
Q ss_pred cEEEECcCCCcchhH
Q 010762 142 NLIAQARNGSGKTTC 156 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (502)
-+.+.|++|||||..
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999985
No 441
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=60.13 E-value=18 Score=25.32 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=30.3
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 010762 348 EKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (502)
Q Consensus 348 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (502)
.+..+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45678999999988999999999999985 5566 7653
No 442
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=60.06 E-value=4.8 Score=37.48 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.5
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999985
No 443
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=60.00 E-value=7.6 Score=30.60 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=32.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 010762 349 KMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (502)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4678999999999999999999999994 889999874
No 444
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=59.87 E-value=3.9 Score=35.32 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 5 ~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 445
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=59.81 E-value=3.5 Score=35.84 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 446
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=59.79 E-value=3.4 Score=34.62 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.9
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999863
No 447
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=59.65 E-value=37 Score=32.73 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=25.4
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec--CcHHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAI 185 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~--Pt~~La~ 185 (502)
+.+++++++|+|||....--+. .+... .+.+++++. |.+..+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~-~l~~~-~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGK-FLREK-HKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-HHHHT-SCCCEEEEECCCSSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHh-cCCeEEEEecCCCCccHH
Confidence 6788889999999986433222 22211 145666665 4444443
No 448
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=59.61 E-value=4.8 Score=34.83 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHhH
Q 010762 141 RNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l 158 (502)
+-+++.||+||||+...-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 778899999999988643
No 449
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=59.49 E-value=6.1 Score=37.19 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=25.3
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
+-+++.|++|+|||...+-.+..... .+..++++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~ 99 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDA 99 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 88999999999999875544443322 2346777765
No 450
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.38 E-value=3.7 Score=34.63 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 13 ~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 67999999999999863
No 451
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=59.20 E-value=18 Score=35.26 Aligned_cols=68 Identities=29% Similarity=0.243 Sum_probs=50.4
Q ss_pred EEEecCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHHcCCCeE
Q 010762 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLTQV 403 (502)
Q Consensus 325 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~~~~~i 403 (502)
..+..+....|.......+... +.++||.|+++.-+...++.|...+.. +..+||+... ...|
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~I 174 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPL 174 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCE
Confidence 3445555666666554434433 679999999999999999999988999 9999998742 3567
Q ss_pred EEEcC
Q 010762 404 LISTD 408 (502)
Q Consensus 404 Lv~T~ 408 (502)
+|+|.
T Consensus 175 vv~T~ 179 (472)
T 2fwr_A 175 TVSTY 179 (472)
T ss_dssp EEEEH
T ss_pred EEEEc
Confidence 77773
No 452
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=58.94 E-value=3.9 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.1
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 453
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=58.92 E-value=4.8 Score=42.40 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.9
Q ss_pred CccEEEECcCCCcchhHh
Q 010762 140 YRNLIAQARNGSGKTTCF 157 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~ 157 (502)
..++++.||+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 478999999999999864
No 454
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=58.91 E-value=4.5 Score=35.01 Aligned_cols=19 Identities=26% Similarity=0.036 Sum_probs=16.2
Q ss_pred ccEEEECcCCCcchhHhHH
Q 010762 141 RNLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~ 159 (502)
.-+.+.||+|+|||.....
T Consensus 26 ~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 8899999999999986433
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=58.89 E-value=5.1 Score=34.34 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.5
Q ss_pred cEEEECcCCCcchhHhHH
Q 010762 142 NLIAQARNGSGKTTCFVL 159 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~l~ 159 (502)
.+++.||+||||+...-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986433
No 456
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=58.75 E-value=5.2 Score=33.02 Aligned_cols=16 Identities=31% Similarity=0.162 Sum_probs=13.6
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+.+.|+.|||||..
T Consensus 5 ~~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTL 20 (169)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4578899999999985
No 457
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=58.72 E-value=3.8 Score=35.06 Aligned_cols=16 Identities=31% Similarity=0.167 Sum_probs=14.3
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+.+.|++|||||..
T Consensus 7 ~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 7 FVIGIAGGTASGKTTL 22 (211)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 6788999999999985
No 458
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=58.67 E-value=4.3 Score=33.67 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.6
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.|+.|||||..
T Consensus 6 ~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTV 21 (179)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 7789999999999985
No 459
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=58.60 E-value=3.2 Score=43.23 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=47.4
Q ss_pred CcEEEEcCChhhHHHH-HHHHHhCC---CcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-cc-----------cCC
Q 010762 351 GQTIIFVRTKNSASAL-HKALKDFG---YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-LA-----------RGF 414 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l-~~~L~~~~---~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-~~-----------~Gl 414 (502)
+++||.+|++.-+... +..|.... +.+..++|+.+...+...+. +...|+|+|.- +. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999988888 88777653 89999999986544332221 46789999842 22 235
Q ss_pred CCCCCCEEEEe
Q 010762 415 DQQQVNLIVNY 425 (502)
Q Consensus 415 di~~v~~VI~~ 425 (502)
.+..+++||.-
T Consensus 133 ~~~~~~lvViD 143 (699)
T 4gl2_A 133 QLSDFSLIIID 143 (699)
T ss_dssp CGGGCSEEEEE
T ss_pred ecccCcEEEEE
Confidence 66788888853
No 460
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=58.51 E-value=3.9 Score=33.97 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=11.5
Q ss_pred ccEEEECcCCCcchhHhH
Q 010762 141 RNLIAQARNGSGKTTCFV 158 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l 158 (502)
..+++.|+.|||||...-
T Consensus 6 ~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CEEEEECCC----CHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 461
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=58.49 E-value=4.3 Score=35.15 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999853
No 462
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=58.43 E-value=6.4 Score=36.66 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=25.2
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEecC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~P 179 (502)
.-+++.|++|+|||...+-.+..... .+..++|++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 78999999999999865444443332 3456777764
No 463
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=58.06 E-value=3.9 Score=38.67 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=14.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-.++.||+|+|||..+
T Consensus 24 g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35779999999999864
No 464
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=57.97 E-value=4.4 Score=33.06 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=13.8
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999863
No 465
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=57.93 E-value=4.8 Score=40.95 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=14.0
Q ss_pred cEEEECcCCCcchhH
Q 010762 142 NLIAQARNGSGKTTC 156 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (502)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999984
No 466
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=57.82 E-value=4.2 Score=34.62 Aligned_cols=16 Identities=38% Similarity=0.214 Sum_probs=13.7
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999853
No 467
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=57.68 E-value=5.7 Score=34.98 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=18.1
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccC
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~ 166 (502)
.-+.+.||+|||||. ++-++..+.
T Consensus 25 e~~~liG~nGsGKST--Ll~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV--FLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHH--HHHHHHTSS
T ss_pred EEEEEECCCCCCHHH--HHHHHhCCC
Confidence 567899999999998 455555553
No 468
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=57.66 E-value=3.9 Score=34.24 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.8
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56899999999999864
No 469
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=57.62 E-value=4.4 Score=35.72 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=14.7
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+++.|++|||||..
T Consensus 28 ~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTV 43 (246)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 7899999999999985
No 470
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=57.50 E-value=4.3 Score=38.22 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.8
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
-++..|+||||||.+.
T Consensus 87 tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 87 SCFAYGQTGSGKTYTM 102 (360)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEeeCCCCCCCCEEE
Confidence 3799999999999873
No 471
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=57.46 E-value=4.6 Score=38.02 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=22.0
Q ss_pred ccEEEECcCCCcchhHhHHHHHhccCCCCCCCeEEEec
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l~~~~~~~~~lil~ 178 (502)
.-+.+.|++|+|||... ..+..+... .+.++++..
T Consensus 158 ~vi~lvG~nGsGKTTll--~~Lag~l~~-~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL--GKLAHRLKN-EGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHH--HHHHHHHHH-TTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHH--HHHHhhccc-cCCEEEEec
Confidence 78999999999999853 333333222 234555553
No 472
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=57.41 E-value=12 Score=35.64 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=49.3
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcc--cccCCCCCCCeEEEeCchHHHHHHHcCccCCCce
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 248 (502)
+.++||.|+++.-+..+++.+... +..+..++++...... .......+..+|+|+|. +-...+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 458999999999999999988875 3445555555433221 11222334578999995 23456788899
Q ss_pred EEEEE
Q 010762 249 KILVY 253 (502)
Q Consensus 249 ~~lVl 253 (502)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99885
No 473
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=57.21 E-value=4.8 Score=37.10 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=14.5
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+.+.|++|||||..
T Consensus 91 ~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTT 106 (312)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred EEEEEECCCCchHHHH
Confidence 7889999999999985
No 474
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=57.19 E-value=4.7 Score=33.68 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=15.2
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 78999999999999863
No 475
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=57.07 E-value=8.6 Score=36.78 Aligned_cols=40 Identities=13% Similarity=-0.132 Sum_probs=26.2
Q ss_pred CccEEEECcCCCcchhHhHHHHHhccCCC---CCCCeEEEecC
Q 010762 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICP 179 (502)
Q Consensus 140 ~~~~lv~a~TGsGKTl~~l~~il~~l~~~---~~~~~~lil~P 179 (502)
+.-+.+.||+|+|||......++..+... ..+..++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 47899999999999987554344433321 13456777754
No 476
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=57.00 E-value=4.6 Score=39.20 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=15.2
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
+++++.||+|+|||...
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 68999999999999863
No 477
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.82 E-value=4 Score=36.27 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=15.0
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999853
No 478
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=56.69 E-value=4.5 Score=34.21 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.3
Q ss_pred cEEEECcCCCcchhH
Q 010762 142 NLIAQARNGSGKTTC 156 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~ 156 (502)
.+++.|++|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999985
No 479
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=56.63 E-value=5.6 Score=33.00 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-.++.|++|+|||..
T Consensus 27 g~~~i~G~NGsGKStl 42 (182)
T 3kta_A 27 GFTAIVGANGSGKSNI 42 (182)
T ss_dssp SEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 4678899999999985
No 480
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=56.29 E-value=38 Score=35.95 Aligned_cols=75 Identities=17% Similarity=0.071 Sum_probs=51.5
Q ss_pred ecCChHHHHHH-HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHHHcCCCe
Q 010762 328 YCPDELAKVMV-IRDRIFELGEKMGQTIIFVRTKNSASALHKALK----DFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 402 (502)
Q Consensus 328 ~~~~~~~k~~~-l~~~l~~~~~~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~ 402 (502)
.......|... .+..+.... .+..++|.++|..-|.+.+..+. .+|+.+..+.|+++...|.... ...
T Consensus 98 eakTGeGKTLvf~Lp~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~D 170 (997)
T 2ipc_A 98 EMKTGEGKTLVATLAVALNAL-TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LAD 170 (997)
T ss_dssp ECCSTHHHHHHHHHHHHHHHT-TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSS
T ss_pred eccCCCchHHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCC
Confidence 34445555443 233222333 45689999999998888776664 4599999999999977766544 368
Q ss_pred EEEEcCc
Q 010762 403 VLISTDV 409 (502)
Q Consensus 403 iLv~T~~ 409 (502)
|+++|..
T Consensus 171 IvyGTpg 177 (997)
T 2ipc_A 171 VTYVTNS 177 (997)
T ss_dssp EEEEEHH
T ss_pred EEEECch
Confidence 9999953
No 481
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=56.22 E-value=40 Score=24.66 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=38.2
Q ss_pred CCcEEEEc------CChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEE
Q 010762 350 MGQTIIFV------RTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 404 (502)
Q Consensus 350 ~~~~lVF~------~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iL 404 (502)
..+++||. +....|..+...|...++....+.-...+..+..+.+.+....+..+
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 45788887 56788999999999988887777666666666666555533333333
No 482
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=55.95 E-value=4.3 Score=34.50 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.8
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999853
No 483
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=55.93 E-value=6.4 Score=35.29 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=17.9
Q ss_pred ccEEEECcCCCcchhHhHHHHHhcc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
.-+.+.||+|+|||.. +-++..+
T Consensus 47 e~~~l~G~NGsGKSTL--lk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTL--SATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHH--HHHHHTC
T ss_pred CEEEEECCCCCCHHHH--HHHHhCC
Confidence 7899999999999984 4444444
No 484
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=55.87 E-value=20 Score=37.64 Aligned_cols=78 Identities=13% Similarity=0.056 Sum_probs=51.1
Q ss_pred CCCeEEEecCcHHHHHHHHHHHHHhhc-------ccCceeeEeecCCCCCccc--ccCCC-----CCCCeEEEeCchHHH
Q 010762 170 KAPQALCICPTRELAIQNLEVLRKMGK-------HTGITSECAVPTDSTNYVP--ISKRP-----PVTAQVVIGTPGTIK 235 (502)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~Ilv~Tp~~l~ 235 (502)
.+..+||.||++.-+..+++.+..... ..++.+..++++.....+. ..... .+...|+|||.-
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i--- 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI--- 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH---
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH---
Confidence 356899999999999999998876322 2356666666665433222 22233 456789999952
Q ss_pred HHHHcCccCCCceEEEEE
Q 010762 236 KWMSAKKLGFSRLKILVY 253 (502)
Q Consensus 236 ~~l~~~~~~~~~~~~lVl 253 (502)
-...+++..+.+||-
T Consensus 379 ---ae~GidIp~v~~VId 393 (773)
T 2xau_A 379 ---AETSLTIDGIVYVVD 393 (773)
T ss_dssp ---HHHTCCCTTEEEEEE
T ss_pred ---HHhCcCcCCeEEEEe
Confidence 223567888887764
No 485
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=55.68 E-value=6.1 Score=34.34 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=16.6
Q ss_pred ccEEEECcCCCcchhHhHHHH
Q 010762 141 RNLIAQARNGSGKTTCFVLGM 161 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~i 161 (502)
-++++.++.|+|||...+--+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 469999999999999844433
No 486
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=55.59 E-value=6.6 Score=34.80 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=17.8
Q ss_pred ccEEEECcCCCcchhHhHHHHHhcc
Q 010762 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~l~~il~~l 165 (502)
.-+.+.||+|+|||.. +-++..+
T Consensus 30 e~~~l~G~nGsGKSTL--lk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTL--GKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHH--HHHHHTC
T ss_pred CEEEEECCCCCCHHHH--HHHHhCC
Confidence 7899999999999984 4444443
No 487
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=55.32 E-value=24 Score=34.86 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=59.2
Q ss_pred EEecCChHHHHHHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHhCC----CcEEEecCCCCHHHHHHHHHHHHcCC
Q 010762 326 KVYCPDELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFG----YEVTTIMGATIQEERDKIVKEFKDGL 400 (502)
Q Consensus 326 ~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~----~~~~~l~~~~~~~~r~~~~~~f~~~~ 400 (502)
.+..+....|.......+.... ...+++||.|+++.-+...++.|...+ ..+..++|+.+...+ ..+.
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~ 204 (510)
T 2oca_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKND 204 (510)
T ss_dssp EEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccC
Confidence 3444555555554443333322 234599999999999999999998752 478899998876543 3567
Q ss_pred CeEEEEcCc-cccC--CCCCCCCEEEE
Q 010762 401 TQVLISTDV-LARG--FDQQQVNLIVN 424 (502)
Q Consensus 401 ~~iLv~T~~-~~~G--ldi~~v~~VI~ 424 (502)
..|+|+|.- +... ..+.++.+||.
T Consensus 205 ~~I~i~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 205 APVVVGTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp CSEEEEEHHHHTTSCGGGGGGEEEEEE
T ss_pred CcEEEEeHHHHhhchhhhhhcCCEEEE
Confidence 889999843 2222 23445666664
No 488
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=55.30 E-value=7.3 Score=32.79 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.2
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
..+.+.+++|+|||..
T Consensus 2 ~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCEEEESCCSSCHHHH
T ss_pred CEEEEECCCCChHHHH
Confidence 5688999999999985
No 489
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=55.25 E-value=4.8 Score=35.91 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=14.9
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 57899999999999863
No 490
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=55.14 E-value=5 Score=33.58 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.6
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999863
No 491
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=55.00 E-value=5.5 Score=32.43 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=14.4
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+.+.||.|+|||..
T Consensus 34 e~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTL 49 (158)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7788999999999984
No 492
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=54.99 E-value=51 Score=32.89 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.9
Q ss_pred CcEEEEcCChhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc-----cc--CCC
Q 010762 351 GQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL-----AR--GFD 415 (502)
Q Consensus 351 ~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~-----~~--Gld 415 (502)
.++||.++++.-+..++..+... ...+..++|+..... .+..+..+...|+|+|.-. .+ ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 48999999999999998888762 356778888876443 3444555677899999531 11 224
Q ss_pred CCCCCEEEE
Q 010762 416 QQQVNLIVN 424 (502)
Q Consensus 416 i~~v~~VI~ 424 (502)
+..+++||.
T Consensus 224 ~~~~~~lVi 232 (563)
T 3i5x_A 224 FRFVDYKVL 232 (563)
T ss_dssp CTTCCEEEE
T ss_pred cccceEEEE
Confidence 556777664
No 493
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=54.88 E-value=7.5 Score=32.24 Aligned_cols=16 Identities=44% Similarity=0.416 Sum_probs=13.8
Q ss_pred ccEEEECcCCCcchhH
Q 010762 141 RNLIAQARNGSGKTTC 156 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~ 156 (502)
.-+++.|+.|||||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 4588999999999985
No 494
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=54.83 E-value=51 Score=25.06 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=34.3
Q ss_pred cCCcEEEEcCC------hhhHHHHHHHHHhCCCc---EEEecCCCCHHHHHHHHHH
Q 010762 349 KMGQTIIFVRT------KNSASALHKALKDFGYE---VTTIMGATIQEERDKIVKE 395 (502)
Q Consensus 349 ~~~~~lVF~~s------~~~~~~l~~~L~~~~~~---~~~l~~~~~~~~r~~~~~~ 395 (502)
...+++||..+ ...|..+.+.|...|+. ...+.-......|..+.+.
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~ 69 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHH
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHH
Confidence 46789999884 88999999999999887 5555444555655555443
No 495
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=54.79 E-value=4.5 Score=34.74 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.8
Q ss_pred cEEEECcCCCcchhHh
Q 010762 142 NLIAQARNGSGKTTCF 157 (502)
Q Consensus 142 ~~lv~a~TGsGKTl~~ 157 (502)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 496
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=54.46 E-value=39 Score=35.73 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=52.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCcc------cc------
Q 010762 349 KMGQTIIFVRTKNSASALHKALK----DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL------AR------ 412 (502)
Q Consensus 349 ~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~~------~~------ 412 (502)
.+..++|.++|..-|.+.++.+. .+|+.+.++.|+++...|.... ...|+++|+.- ..
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~ 224 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSL 224 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccH
Confidence 45689999999999888777664 4599999999999987665443 26899999521 11
Q ss_pred -CCCCCCCCEEEE
Q 010762 413 -GFDQQQVNLIVN 424 (502)
Q Consensus 413 -Gldi~~v~~VI~ 424 (502)
.+....+.++|.
T Consensus 225 ~~l~lr~l~~lIV 237 (922)
T 1nkt_A 225 DDLVQRGHHYAIV 237 (922)
T ss_dssp GGCCCCCCCEEEE
T ss_pred hhhccCCCCEEEE
Confidence 356667888775
No 497
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=54.44 E-value=5.2 Score=33.60 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=13.2
Q ss_pred EEEECcCCCcchhHh
Q 010762 143 LIAQARNGSGKTTCF 157 (502)
Q Consensus 143 ~lv~a~TGsGKTl~~ 157 (502)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999863
No 498
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=54.32 E-value=24 Score=34.35 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=44.5
Q ss_pred CCeEEEecCcHHHHHHHHHHHHHhhcccCceeeEeecCCCCCcccccCCCCCCCeEEEeCchHHHHHHHcCccCCCceEE
Q 010762 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (502)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (502)
+.++||.||++.-+..+++.++.. ++.+..+.+.. ..........+..+|+|||.- -...+++.. ++
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~--R~~~~~~f~~g~~~iLVaT~v------~~~GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS--YDTEYPKCKNGDWDFVITTDI------SEMGANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC--CCCCGGGSSSCCCSEEEESSC------C---CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH--HHHHHhhccCCCceEEEECCh------HHhCeecCC-CE
Confidence 457999999999999999988875 45555555532 222334445567899999951 223556666 55
Q ss_pred EE
Q 010762 251 LV 252 (502)
Q Consensus 251 lV 252 (502)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 499
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=54.19 E-value=53 Score=32.97 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=49.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHHHHcCCCeEEEEcCc-----ccc--CC
Q 010762 350 MGQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LAR--GF 414 (502)
Q Consensus 350 ~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~~~f~~~~~~iLv~T~~-----~~~--Gl 414 (502)
..++||.++++.-+..++..+... .+.+..++|+..... .+..+..+...|+|+|.- +.+ ..
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 358999999999999988888753 356778888876443 344555566789999942 111 23
Q ss_pred CCCCCCEEEE
Q 010762 415 DQQQVNLIVN 424 (502)
Q Consensus 415 di~~v~~VI~ 424 (502)
.+..+++||.
T Consensus 172 ~~~~~~~lVi 181 (579)
T 3sqw_A 172 FFRFVDYKVL 181 (579)
T ss_dssp HCTTCCEEEE
T ss_pred ccccCCEEEE
Confidence 4566777664
No 500
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=54.06 E-value=5.2 Score=35.27 Aligned_cols=17 Identities=35% Similarity=0.261 Sum_probs=15.3
Q ss_pred ccEEEECcCCCcchhHh
Q 010762 141 RNLIAQARNGSGKTTCF 157 (502)
Q Consensus 141 ~~~lv~a~TGsGKTl~~ 157 (502)
..+++.|+.|||||...
T Consensus 30 ~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 78999999999999864
Done!