Query 010764
Match_columns 502
No_of_seqs 115 out of 129
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 98.7 1.9E-08 4.1E-13 98.2 4.9 114 3-141 165-279 (299)
2 PF01529 zf-DHHC: DHHC palmito 97.8 4.5E-05 9.7E-10 67.8 5.8 38 51-88 137-174 (174)
3 KOG1315 Predicted DHHC-type Zn 93.9 0.15 3.3E-06 52.4 6.9 37 50-87 196-232 (307)
4 KOG1313 DHHC-type Zn-finger pr 79.7 2.5 5.4E-05 43.9 4.5 45 51-95 209-253 (309)
5 KOG4536 Predicted membrane pro 64.6 11 0.00024 39.6 4.9 69 11-86 201-269 (347)
6 PF12273 RCR: Chitin synthesis 62.8 2.2 4.9E-05 37.9 -0.2 27 5-31 3-29 (130)
7 COG5273 Uncharacterized protei 60.5 20 0.00043 36.9 6.0 43 53-95 198-240 (309)
8 PF15232 DUF4585: Domain of un 52.7 13 0.00028 32.0 2.7 20 362-381 28-47 (75)
9 PF05663 DUF809: Protein of un 49.6 12 0.00027 34.2 2.2 38 56-94 22-59 (138)
10 PF08972 DUF1902: Domain of un 48.4 11 0.00024 30.6 1.5 15 365-379 4-18 (54)
11 PRK10833 putative assembly pro 44.9 25 0.00055 38.5 4.1 37 3-40 6-46 (617)
12 PF05101 VirB3: Type IV secret 43.5 77 0.0017 26.1 5.8 37 41-77 22-58 (89)
13 PF13829 DUF4191: Domain of un 42.3 43 0.00094 33.7 4.9 87 51-155 36-122 (224)
14 COG3763 Uncharacterized protei 39.4 20 0.00043 30.7 1.8 35 1-35 1-35 (71)
15 PF14018 DUF4234: Domain of un 37.7 70 0.0015 25.8 4.7 27 6-32 6-32 (75)
16 PF10710 DUF2512: Protein of u 35.9 81 0.0018 29.3 5.3 18 62-80 98-115 (136)
17 KOG3455 Predicted membrane pro 35.7 32 0.00069 32.6 2.7 31 6-36 10-40 (139)
18 PHA02680 ORF090 IMV phosphoryl 34.4 1.2E+02 0.0026 27.1 5.8 37 43-82 42-78 (91)
19 KOG3488 Dolichol phosphate-man 32.4 1E+02 0.0022 26.9 4.9 14 15-28 24-37 (81)
20 PF13273 DUF4064: Protein of u 32.0 1.2E+02 0.0025 25.7 5.3 32 4-35 9-40 (100)
21 PF01566 Nramp: Natural resist 30.3 1.5E+02 0.0032 30.2 6.6 41 49-89 157-203 (358)
22 KOG2927 Membrane component of 30.0 71 0.0015 34.5 4.4 19 185-203 298-316 (372)
23 PRK10747 putative protoheme IX 29.6 80 0.0017 32.6 4.7 16 190-205 168-183 (398)
24 PF03311 Cornichon: Cornichon 29.6 1.4E+02 0.003 27.2 5.7 26 65-90 78-103 (128)
25 PF05297 Herpes_LMP1: Herpesvi 29.3 18 0.00039 38.3 0.0 24 11-41 113-136 (381)
26 PF13061 DUF3923: Protein of u 28.0 2.7E+02 0.0058 23.2 6.6 58 3-73 7-64 (66)
27 PF02687 FtsX: FtsX-like perme 26.7 2.3E+02 0.005 22.8 6.0 34 7-40 6-39 (121)
28 PRK01844 hypothetical protein; 25.3 50 0.0011 28.3 1.9 29 7-35 7-35 (72)
29 PRK06231 F0F1 ATP synthase sub 24.0 2.1E+02 0.0046 27.8 6.2 35 2-36 8-43 (205)
30 PF04584 Pox_A28: Poxvirus A28 23.6 69 0.0015 30.5 2.7 22 67-91 18-39 (140)
31 TIGR00869 sec62 protein transl 23.2 2.6E+02 0.0056 28.5 6.8 28 50-77 152-179 (232)
32 PF05140 ResB: ResB-like famil 22.8 3.1E+02 0.0067 29.3 7.6 47 45-91 54-100 (464)
33 COG2919 Septum formation initi 21.9 99 0.0022 27.6 3.2 32 62-93 32-63 (117)
34 PF00033 Cytochrom_B_N: Cytoch 21.7 2.9E+02 0.0062 24.5 6.1 13 66-78 162-174 (188)
35 PF15050 SCIMP: SCIMP protein 21.7 3.2E+02 0.007 25.9 6.5 13 67-79 27-39 (133)
36 PF14802 TMEM192: TMEM192 fami 21.5 3.8E+02 0.0083 27.1 7.5 23 6-28 29-51 (236)
37 COG2177 FtsX Cell division pro 21.4 2.6E+02 0.0057 29.0 6.5 69 2-72 173-243 (297)
38 PRK00523 hypothetical protein; 21.3 66 0.0014 27.6 1.9 33 4-36 5-37 (72)
39 PF05510 Sarcoglycan_2: Sarcog 21.0 71 0.0015 34.5 2.5 26 46-71 285-310 (386)
40 PRK10929 putative mechanosensi 20.9 1.7E+02 0.0037 35.7 5.7 19 73-91 724-742 (1109)
41 PF07234 DUF1426: Protein of u 20.7 2E+02 0.0044 26.5 4.9 41 46-89 15-57 (117)
42 COG2881 Uncharacterized protei 20.7 1.9E+02 0.0041 28.4 5.1 76 6-86 33-110 (181)
43 PF10327 7TM_GPCR_Sri: Serpent 20.5 3.4E+02 0.0073 27.5 7.0 67 18-84 150-232 (303)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=98.67 E-value=1.9e-08 Score=98.16 Aligned_cols=114 Identities=21% Similarity=0.164 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHhhheeeeeccchhhHHHHHHhCCCccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCchH
Q 010764 3 ISLVWLVIEAGVGIAVLVRCFVNKKSMETEIIDRLGDGFSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTY 82 (502)
Q Consensus 3 SALLgLil~~~VgiYVfIqcFVDp~~Lrt~i~~klG~sfsrapf~~Vvai~llLalvSlvlLGhLLfFHIyLi~KGITTY 82 (502)
...++++..+++..+.+++.+.+.+...+ .+.......+.++++++++++++.+|+|++||+||+.++.|||
T Consensus 165 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~ 236 (299)
T KOG1311|consen 165 YLALGVLLALAFLFYELLQRADNLKVNLT--------PVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTY 236 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccc--------ccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchh
Confidence 34556666666666666666665554333 2233334556677778999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCcCCC-CCCcccCCCCCccccccCCCCCccccccCccCCCeeee
Q 010764 83 EYVVAMRAMSEAPAGASVDEE-LPNVLYSPSGSATTGVSGGSSLGLQYKGGWCTPPRVFV 141 (502)
Q Consensus 83 EYIva~R~q~e~~~~~s~d~~-~~S~~~Sp~~S~~Tg~S~~SS~~~~~rG~wCTPPRiFv 141 (502)
|||.+.+.... +.+ -+.+ ..+.. ..||..+...||+|...+-
T Consensus 237 e~~~~~~~~~~--~~~-~~~g~~~n~~--------------~~~~~~~~~~~~~p~~~~~ 279 (299)
T KOG1311|consen 237 ESIKSLDFVSR--SNP-YDLGLLKNLQ--------------EVFGGPLPLSWLSPFARSG 279 (299)
T ss_pred hhhhccccccc--cCC-CchhHHHHHH--------------HHhCCCCCcccccccccCC
Confidence 99998221111 000 1111 00111 4588889999999988764
No 2
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=97.77 E-value=4.5e-05 Score=67.80 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhCCchHHHHHHH
Q 010764 51 AICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAM 88 (502)
Q Consensus 51 ai~llLalvSlvlLGhLLfFHIyLi~KGITTYEYIva~ 88 (502)
+++++++++.+++++-|+++|+|+|.+|+||||++.++
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~ 174 (174)
T PF01529_consen 137 IFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKRK 174 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHcC
Confidence 66677778889999999999999999999999999753
No 3
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=93.88 E-value=0.15 Score=52.43 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhCCchHHHHHH
Q 010764 50 VAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVA 87 (502)
Q Consensus 50 vai~llLalvSlvlLGhLLfFHIyLi~KGITTYEYIva 87 (502)
++..++....++.+++ ||+||+||+.+.+||.|-.-.
T Consensus 196 ~~~~~~~~~f~i~l~~-~l~~h~~Li~~N~TTiE~~~~ 232 (307)
T KOG1315|consen 196 VFLFLVAIAFSISLSG-LLCFHTYLILKNKTTIEAYKS 232 (307)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHcCchhHhhhcc
Confidence 3333444444555556 999999999999999986544
No 4
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=79.74 E-value=2.5 Score=43.91 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhCCchHHHHHHHHhhhcCC
Q 010764 51 AICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAMRAMSEAP 95 (502)
Q Consensus 51 ai~llLalvSlvlLGhLLfFHIyLi~KGITTYEYIva~R~q~e~~ 95 (502)
+-+.+|+...++++|+|...|.+||..|.|-.||.+.+-+.+.-.
T Consensus 209 ~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~ 253 (309)
T KOG1313|consen 209 ANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYL 253 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHH
Confidence 447777888899999999999999999999999999887766543
No 5
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=64.56 E-value=11 Score=39.59 Aligned_cols=69 Identities=22% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHhhheeeeeccchhhHHHHHHhCCCccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCchHHHHH
Q 010764 11 EAGVGIAVLVRCFVNKKSMETEIIDRLGDGFSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVV 86 (502)
Q Consensus 11 ~~~VgiYVfIqcFVDp~~Lrt~i~~klG~sfsrapf~~Vvai~llLalvSlvlLGhLLfFHIyLi~KGITTYEYIv 86 (502)
.+.|++|+.|..-++-++ .+|+...-++..++.+++++=+|-.++++++ +|--|.=||.-|+|||.|..
T Consensus 201 l~Lvy~~~milp~~~~k~-----r~kLPsr~sFy~Y~~im~~Ln~Lq~~gsal~--~f~~~~Glc~vgitt~~Yf~ 269 (347)
T KOG4536|consen 201 LLLVYSYGMILPMYNSKW-----REKLPSRPSFYVYIGIMAALNLLQLLGSALT--AFDAHFGLCLVGITTVCYFA 269 (347)
T ss_pred HHHHHHHHheeeccchhh-----hhcCCCcchHHHHHHHHHHHHHHHHHHHHHH--hcccccceEEechhHHHHHH
Confidence 445555555555555432 3456544444555555555555555555544 23447789999999999865
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=62.84 E-value=2.2 Score=37.94 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhheeeeeccchhhH
Q 010764 5 LVWLVIEAGVGIAVLVRCFVNKKSMET 31 (502)
Q Consensus 5 LLgLil~~~VgiYVfIqcFVDp~~Lrt 31 (502)
+|++||+++++|+||+.|+++++..|.
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356666777777777777777776554
No 7
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=60.49 E-value=20 Score=36.93 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhCCchHHHHHHHHhhhcCC
Q 010764 53 CTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAMRAMSEAP 95 (502)
Q Consensus 53 ~llLalvSlvlLGhLLfFHIyLi~KGITTYEYIva~R~q~e~~ 95 (502)
+-+++.+-++.+-=|++||++++.++.||||.+.-+|-++..+
T Consensus 198 ~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~ 240 (309)
T COG5273 198 CSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLE 240 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceeccc
Confidence 5566666677777789999999999999999999888766544
No 8
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=52.71 E-value=13 Score=32.01 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=16.8
Q ss_pred cccceeeccCCCceeeeccc
Q 010764 362 KRTSVVWDQEAGRYVSVPIS 381 (502)
Q Consensus 362 ~R~SVvWDqeAGRyVS~p~~ 381 (502)
-|+-..+|+|.|.||-|+.+
T Consensus 28 p~~k~lfDPETGqYVeV~iP 47 (75)
T PF15232_consen 28 PKTKTLFDPETGQYVEVLIP 47 (75)
T ss_pred cceeeeecCCCCcEEEEeCC
Confidence 35778999999999999864
No 9
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=49.59 E-value=12 Score=34.20 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=25.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhCCchHHHHHHHHhhhcC
Q 010764 56 VSMLACIPLGELFFFHMILIRKGITTYEYVVAMRAMSEA 94 (502)
Q Consensus 56 LalvSlvlLGhLLfFHIyLi~KGITTYEYIva~R~q~e~ 94 (502)
++++++++|..||.-||||.|-.-.. .-+..||.-+..
T Consensus 22 vsvisffllayllmahiwlswfsnnq-hclrtmrhlekl 59 (138)
T PF05663_consen 22 VSVISFFLLAYLLMAHIWLSWFSNNQ-HCLRTMRHLEKL 59 (138)
T ss_pred eehHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHhc
Confidence 45678899999999999999864322 233445654443
No 10
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=48.39 E-value=11 Score=30.60 Aligned_cols=15 Identities=40% Similarity=0.893 Sum_probs=12.4
Q ss_pred ceeeccCCCceeeec
Q 010764 365 SVVWDQEAGRYVSVP 379 (502)
Q Consensus 365 SVvWDqeAGRyVS~p 379 (502)
..+||+|||-||.-.
T Consensus 4 ~a~wD~EA~VWvA~s 18 (54)
T PF08972_consen 4 RAFWDEEAGVWVATS 18 (54)
T ss_dssp EEEEETTTTEEEEE-
T ss_pred EEEEcCCCCEEEEec
Confidence 468999999999874
No 11
>PRK10833 putative assembly protein; Provisional
Probab=44.86 E-value=25 Score=38.48 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHhhheeeeeccchhhHHHHH----HhCCC
Q 010764 3 ISLVWLVIEAGVGIAVLVRCFVNKKSMETEIID----RLGDG 40 (502)
Q Consensus 3 SALLgLil~~~VgiYVfIqcFVDp~~Lrt~i~~----klG~s 40 (502)
..+++|++++++++.+++ +|+|+..+|.+|++ .+|..
T Consensus 6 ~~l~~l~~l~v~~~~al~-~~id~n~~k~~i~~~v~~~tGr~ 46 (617)
T PRK10833 6 TTLMILLVVLVAGLSALV-LLVNPNDFRAYMVKQVEARSGYQ 46 (617)
T ss_pred HHHHHHHHHHHHHHHHhe-EEEChHHhhHHHHHHHHHHhCCE
Confidence 356666666776777666 99999999998853 46654
No 12
>PF05101 VirB3: Type IV secretory pathway, VirB3-like protein; InterPro: IPR007792 This entry represents type IV secretion system proteins VirB3, TrbD and AvhB. Type IV secretion systems are found in plant and animal pathogens, as well as in symbiotic bacteria. The tumour-inducing (Ti) plasmid of Rhizobium radiobacter (Agrobacterium tumefaciens) encodes two DNA transfer systems: VirB and Trb, where the virB operon is required for the transfer DNA to the plant host, and the trb system is required for the conjugal transfer of the Ti plasmid between cells of Agrobacterium [, ]. In addition, VirB3 is found associated with bacterial inner and outer membranes and assists T pilus formation as an assembly factor []. The conjugal transfer protein TrbD contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins []. This entry also includes avhB (Agrobacterium virulence homologue virB), which is most similar to the VirB type IV secretion system of Bartonella henselae (Rochalimaea henselae) [].
Probab=43.48 E-value=77 Score=26.10 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=22.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 010764 41 FSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRK 77 (502)
Q Consensus 41 fsrapf~~Vvai~llLalvSlvlLGhLLfFHIyLi~K 77 (502)
+++.++++++++++++.+..-.++.-|+++-++.+.+
T Consensus 22 vp~~~~~~~~~~~~~l~~~~~~~~~~li~~~~~~~~~ 58 (89)
T PF05101_consen 22 VPREPFILNLGLAFLLFLIIRSLWYLLIFIILHFIAR 58 (89)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666555555556666666553
No 13
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=42.34 E-value=43 Score=33.74 Aligned_cols=87 Identities=24% Similarity=0.305 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhCCchHHHHHHHHhhhcCCCCCCcCCCCCCcccCCCCCccccccCCCCCccccc
Q 010764 51 AICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAMRAMSEAPAGASVDEELPNVLYSPSGSATTGVSGGSSLGLQYK 130 (502)
Q Consensus 51 ai~llLalvSlvlLGhLLfFHIyLi~KGITTYEYIva~R~q~e~~~~~s~d~~~~S~~~Sp~~S~~Tg~S~~SS~~~~~r 130 (502)
++.+++.++.-+++|++++|=|+=+.-|+..-=+|...|.+..+-.. .|| | |.. +.-. ++ ..|
T Consensus 36 l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~q--ieG-q------pGA-a~av------L~-~lr 98 (224)
T PF13829_consen 36 LGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQ--IEG-Q------PGA-AGAV------LD-NLR 98 (224)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcC-C------Cch-HHHH------HH-hhc
Confidence 44445555566678888888888889999999999999987776421 122 1 222 1112 23 467
Q ss_pred cCccCCCeeeeecCCcccCCCCCCC
Q 010764 131 GGWCTPPRVFVDYQDEVVPHLEPGM 155 (502)
Q Consensus 131 G~wCTPPRiFvd~Qdevip~le~g~ 155 (502)
+.|-+++=+-++.|.|+|.. ..|+
T Consensus 99 ~~W~~~~pVa~nr~qD~V~R-~vGr 122 (224)
T PF13829_consen 99 RGWRVTEPVAVNRTQDAVHR-VVGR 122 (224)
T ss_pred CCcccCCceeecCccceEEE-ecCC
Confidence 79999998888877777765 3444
No 14
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.38 E-value=20 Score=30.66 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHHHHHhhheeeeeccchhhHHHHH
Q 010764 1 MAISLVWLVIEAGVGIAVLVRCFVNKKSMETEIID 35 (502)
Q Consensus 1 M~SALLgLil~~~VgiYVfIqcFVDp~~Lrt~i~~ 35 (502)
|..++..|++.++.++.++.-||+-++-+++++.+
T Consensus 1 m~l~lail~ivl~ll~G~~~G~fiark~~~k~lk~ 35 (71)
T COG3763 1 MSLWLAILLIVLALLAGLIGGFFIARKQMKKQLKD 35 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555567777788888889999999888877764
No 15
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=37.74 E-value=70 Score=25.79 Aligned_cols=27 Identities=22% Similarity=0.092 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhheeeeeccchhhHH
Q 010764 6 VWLVIEAGVGIAVLVRCFVNKKSMETE 32 (502)
Q Consensus 6 LgLil~~~VgiYVfIqcFVDp~~Lrt~ 32 (502)
+.++..+..|||.++..+.+-++++..
T Consensus 6 ~ilLsiiT~GIY~l~W~y~~~~~~~~~ 32 (75)
T PF14018_consen 6 VILLSIITCGIYGLYWLYKIWKELNQL 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555588999999999988886655
No 16
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=35.88 E-value=81 Score=29.31 Aligned_cols=18 Identities=44% Similarity=0.901 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHHHhCCc
Q 010764 62 IPLGELFFFHMILIRKGIT 80 (502)
Q Consensus 62 vlLGhLLfFHIyLi~KGIT 80 (502)
+.+|+ .|||.||.++.+.
T Consensus 98 i~v~E-~fFH~yl~~~~~~ 115 (136)
T PF10710_consen 98 IGVGE-YFFHRYLLRNVLR 115 (136)
T ss_pred HHHHH-HHHHHHHHHcccc
Confidence 33445 5799999999887
No 17
>KOG3455 consensus Predicted membrane protein [Function unknown]
Probab=35.70 E-value=32 Score=32.62 Aligned_cols=31 Identities=10% Similarity=0.388 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhheeeeeccchhhHHHHHH
Q 010764 6 VWLVIEAGVGIAVLVRCFVNKKSMETEIIDR 36 (502)
Q Consensus 6 LgLil~~~VgiYVfIqcFVDp~~Lrt~i~~k 36 (502)
-|++++..+.++=.+|||++..++..+..+.
T Consensus 10 ~Wl~~Vsv~algn~~qsy~~~~~l~~~vyt~ 40 (139)
T KOG3455|consen 10 KWLVFVSVQALGNVWQSYAKRRQLTAKVYTS 40 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHhCC
Confidence 3888888899999999999998888877766
No 18
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=34.44 E-value=1.2e+02 Score=27.12 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCchH
Q 010764 43 RAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTY 82 (502)
Q Consensus 43 rapf~~Vvai~llLalvSlvlLGhLLfFHIyLi~KGITTY 82 (502)
.-++=++.+++.+|+++.+ || +|+|-.|=.+.+-.+|
T Consensus 42 ~~~wRalSii~FIlG~vl~--lG-ilifs~y~~C~~~~~~ 78 (91)
T PHA02680 42 DYVWRALSVTCFIVGAVLL--LG-LFVFSMYRKCSGSMPY 78 (91)
T ss_pred chhHHHHHHHHHHHHHHHH--HH-HHHHHHhcccCCCcee
Confidence 4456667777777777543 56 8889888766666666
No 19
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=32.37 E-value=1e+02 Score=26.85 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=11.3
Q ss_pred HHhhheeeeeccch
Q 010764 15 GIAVLVRCFVNKKS 28 (502)
Q Consensus 15 giYVfIqcFVDp~~ 28 (502)
-+||+|.=|||..-
T Consensus 24 T~WViilPFvDs~h 37 (81)
T KOG3488|consen 24 TIWVIILPFVDSMH 37 (81)
T ss_pred HHHHhhhcccchhH
Confidence 36799999999864
No 20
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=32.03 E-value=1.2e+02 Score=25.71 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhheeeeeccchhhHHHHH
Q 010764 4 SLVWLVIEAGVGIAVLVRCFVNKKSMETEIID 35 (502)
Q Consensus 4 ALLgLil~~~VgiYVfIqcFVDp~~Lrt~i~~ 35 (502)
+|.+.++....++..+.-.+++.++++++.++
T Consensus 9 ~~Ig~il~il~~~~~l~~~~~~~~~~~~~~~~ 40 (100)
T PF13273_consen 9 GWIGGILGILFGFFGLLIGFFGNSEFKEELAE 40 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 45555554444333333334455566665543
No 21
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=30.31 E-value=1.5e+02 Score=30.24 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCchH------HHHHHHH
Q 010764 49 VVAICTAVSMLACIPLGELFFFHMILIRKGITTY------EYVVAMR 89 (502)
Q Consensus 49 Vvai~llLalvSlvlLGhLLfFHIyLi~KGITTY------EYIva~R 89 (502)
-..+.+++++++...-.|-+|+|=|++.++--++ +|+..+|
T Consensus 157 ~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~ 203 (358)
T PF01566_consen 157 PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYAR 203 (358)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHH
Confidence 4567778888888889999999999998877665 3566555
No 22
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.02 E-value=71 Score=34.47 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=15.2
Q ss_pred hhccCCHHHHHHHHHHHHh
Q 010764 185 KLAKLDSSEAMRAAAKARA 203 (502)
Q Consensus 185 kLAkLn~eea~kAAakAR~ 203 (502)
++.|=+.+||+++-++-+.
T Consensus 298 ~k~k~~~~eas~~~~~~~~ 316 (372)
T KOG2927|consen 298 KKRKSSPEEASRSEAEQDM 316 (372)
T ss_pred HhhhcChhhhhhhhhhhhh
Confidence 8899999999887666554
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=29.58 E-value=80 Score=32.57 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHhhC
Q 010764 190 DSSEAMRAAAKARASS 205 (502)
Q Consensus 190 n~eea~kAAakAR~~S 205 (502)
+.++|.+++.++++..
T Consensus 168 ~~~~Al~~l~~~~~~~ 183 (398)
T PRK10747 168 ENHAARHGVDKLLEVA 183 (398)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4455555555555443
No 24
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=29.56 E-value=1.4e+02 Score=27.24 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhCCchHHHHHHHHh
Q 010764 65 GELFFFHMILIRKGITTYEYVVAMRA 90 (502)
Q Consensus 65 GhLLfFHIyLi~KGITTYEYIva~R~ 90 (502)
.=++++|++.+.++.-.||=..-.|+
T Consensus 78 lPl~~y~~~~~~~~~~l~D~T~If~~ 103 (128)
T PF03311_consen 78 LPLLAYHIYRYFRRQHLYDPTEIFNQ 103 (128)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHH
Confidence 34689999999999877776655544
No 25
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.29 E-value=18 Score=38.27 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHhhheeeeeccchhhHHHHHHhCCCc
Q 010764 11 EAGVGIAVLVRCFVNKKSMETEIIDRLGDGF 41 (502)
Q Consensus 11 ~~~VgiYVfIqcFVDp~~Lrt~i~~klG~sf 41 (502)
.+.+.+++.|+||+ . +-.++|.+|
T Consensus 113 ~l~~lLaL~vW~Ym---~----lLr~~GAs~ 136 (381)
T PF05297_consen 113 FLCCLLALGVWFYM---W----LLRELGASF 136 (381)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHH---H----HHHHhhhHH
Confidence 34455556667762 1 345677663
No 26
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=28.01 E-value=2.7e+02 Score=23.25 Aligned_cols=58 Identities=17% Similarity=0.393 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHhhheeeeeccchhhHHHHHHhCCCccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 010764 3 ISLVWLVIEAGVGIAVLVRCFVNKKSMETEIIDRLGDGFSRAPFATVVAICTAVSMLACIPLGELFFFHMI 73 (502)
Q Consensus 3 SALLgLil~~~VgiYVfIqcFVDp~~Lrt~i~~klG~sfsrapf~~Vvai~llLalvSlvlLGhLLfFHIy 73 (502)
+.++++++-+.+++++++|- ||-. +..-.+=.=...+.+++.+..+++++|+..+++.
T Consensus 7 ~ni~~lilf~~~a~~I~~R~-vDga------------Gv~qT~~~k~itl~vl~i~~~~i~i~q~Iw~~i~ 64 (66)
T PF13061_consen 7 FNIIWLILFLIVAIFIWLRK-VDGA------------GVVQTPELKLITLAVLGIFFIIILIIQLIWLIIL 64 (66)
T ss_pred hHHHHHHHHHHHHHHheeee-cccc------------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888764 3333 2222222223333444445566778898887763
No 27
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=26.66 E-value=2.3e+02 Score=22.78 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhheeeeeccchhhHHHHHHhCCC
Q 010764 7 WLVIEAGVGIAVLVRCFVNKKSMETEIIDRLGDG 40 (502)
Q Consensus 7 gLil~~~VgiYVfIqcFVDp~~Lrt~i~~klG~s 40 (502)
.+++...+.++.++..+++++.-+-.+.+.+|.+
T Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~~~~~il~~lG~s 39 (121)
T PF02687_consen 6 LLLLIAIFILFNIISSSIRERRREIAILRALGAS 39 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444455556666666666554444455667776
No 28
>PRK01844 hypothetical protein; Provisional
Probab=25.33 E-value=50 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhheeeeeccchhhHHHHH
Q 010764 7 WLVIEAGVGIAVLVRCFVNKKSMETEIID 35 (502)
Q Consensus 7 gLil~~~VgiYVfIqcFVDp~~Lrt~i~~ 35 (502)
.+++.++..+.+++-||+-++-+++++++
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888899999888888765
No 29
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=23.98 E-value=2.1e+02 Score=27.80 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHhhheeeeeccchhhH-HHHHH
Q 010764 2 AISLVWLVIEAGVGIAVLVRCFVNKKSMET-EIIDR 36 (502)
Q Consensus 2 ~SALLgLil~~~VgiYVfIqcFVDp~~Lrt-~i~~k 36 (502)
+..|++|.+.+.+...+++-|--|-.++.. .|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (205)
T PRK06231 8 VFKLLLLSFSFLIISLFLVSCTENVEELKSKSIINE 43 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCChhhcCHHHHHHH
Confidence 457888999999999999999999777754 44444
No 30
>PF04584 Pox_A28: Poxvirus A28 family; InterPro: IPR007664 The poxvirus A28 protein is expressed at late times during the virus replication cycle and is a membrane component of the intracellular mature virion. Repression of A28 inhibits cell-to-cell spread, suggesting that all poxviruses use a common A28-dependent mechanism of cell penetration []. An N-terminal hydrophobic sequence, present in all poxvirus A28 orthologues, anchors the protein in the virion surface membrane so that most of it is exposed to the cytoplasm [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=23.58 E-value=69 Score=30.50 Aligned_cols=22 Identities=14% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHhh
Q 010764 67 LFFFHMILIRKGITTYEYVVAMRAM 91 (502)
Q Consensus 67 LLfFHIyLi~KGITTYEYIva~R~q 91 (502)
+++|.+|-+.+ .||||++--+.
T Consensus 18 ~i~fQ~y~iYe---NYdnI~EFN~~ 39 (140)
T PF04584_consen 18 FILFQLYYIYE---NYDNIKEFNDA 39 (140)
T ss_pred HHHHHHHHHHH---hhhHHHHHHhh
Confidence 35788888887 49999876543
No 31
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=23.24 E-value=2.6e+02 Score=28.51 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 010764 50 VAICTAVSMLACIPLGELFFFHMILIRK 77 (502)
Q Consensus 50 vai~llLalvSlvlLGhLLfFHIyLi~K 77 (502)
++++.+|+++-++++..|++|=|..+.-
T Consensus 152 ~~~lgll~~~~~laivRlilF~i~~~~~ 179 (232)
T TIGR00869 152 LGALGIIGGFFAVAILRLILFVLTLIVV 179 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555666777776666653
No 32
>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []. Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.
Probab=22.80 E-value=3.1e+02 Score=29.34 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCchHHHHHHHHhh
Q 010764 45 PFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYEYVVAMRAM 91 (502)
Q Consensus 45 pf~~Vvai~llLalvSlvlLGhLLfFHIyLi~KGITTYEYIva~R~q 91 (502)
++.+++.+++++++++|.+==..-++..+--.+.....+++..++..
T Consensus 54 ~wF~~ll~ll~~sL~~Cs~~R~~~~~k~~~~~~~~~~~~~l~~~~~~ 100 (464)
T PF05140_consen 54 WWFLLLLVLLALSLIACSIDRLPPLWKALRRPPPPKPARFLKRMPLS 100 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChhHhhcCCce
Confidence 34444555666666666543333333333334444555555555543
No 33
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=21.88 E-value=99 Score=27.61 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHHhCCchHHHHHHHHhhhc
Q 010764 62 IPLGELFFFHMILIRKGITTYEYVVAMRAMSE 93 (502)
Q Consensus 62 vlLGhLLfFHIyLi~KGITTYEYIva~R~q~e 93 (502)
+++..+|.||.++-.+|+-.|+=+.++.++++
T Consensus 32 ~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~ 63 (117)
T COG2919 32 LALLALFQYLAWFGKNGAADVLQLQRQIAAQQ 63 (117)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34667899999999999999888777765444
No 34
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=21.71 E-value=2.9e+02 Score=24.52 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHhC
Q 010764 66 ELFFFHMILIRKG 78 (502)
Q Consensus 66 hLLfFHIyLi~KG 78 (502)
-+++.|+|+....
T Consensus 162 ~~i~~Hi~~a~~~ 174 (188)
T PF00033_consen 162 AFIIIHIYAAIFH 174 (188)
T ss_dssp HHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHH
Confidence 3455566554433
No 35
>PF15050 SCIMP: SCIMP protein
Probab=21.68 E-value=3.2e+02 Score=25.91 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhCC
Q 010764 67 LFFFHMILIRKGI 79 (502)
Q Consensus 67 LLfFHIyLi~KGI 79 (502)
|||.-=++.++|.
T Consensus 27 lyCvcR~~lRqGk 39 (133)
T PF15050_consen 27 LYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHHHHHccc
Confidence 4555556666664
No 36
>PF14802 TMEM192: TMEM192 family
Probab=21.48 E-value=3.8e+02 Score=27.07 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhheeeeeccch
Q 010764 6 VWLVIEAGVGIAVLVRCFVNKKS 28 (502)
Q Consensus 6 LgLil~~~VgiYVfIqcFVDp~~ 28 (502)
+.+++.+++++-.+|-|++.+..
T Consensus 29 l~ll~~v~l~~~~~vl~~~~~~~ 51 (236)
T PF14802_consen 29 LLLLLSVVLAIVGFVLCWYPPPD 51 (236)
T ss_pred HHHHHHHHHHHHHHHHhccCCcc
Confidence 34444456666666666666543
No 37
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=21.36 E-value=2.6e+02 Score=29.01 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHhhheeeeeccchhhHHHHHHhCC--CccchhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010764 2 AISLVWLVIEAGVGIAVLVRCFVNKKSMETEIIDRLGD--GFSRAPFATVVAICTAVSMLACIPLGELFFFHM 72 (502)
Q Consensus 2 ~SALLgLil~~~VgiYVfIqcFVDp~~Lrt~i~~klG~--sfsrapf~~Vvai~llLalvSlvlLGhLLfFHI 72 (502)
+++++.++..+.|+--|=+..|-++++ -++-+-+|. +|.+.||+.=.+++.+++.+..+.|.-|+++-.
T Consensus 173 ~~~ll~~~~vllI~NtiR~~i~sRr~e--IeVmklvGAt~~fI~~PFl~~g~~~gl~Ga~~~~~l~~~l~~~~ 243 (297)
T COG2177 173 LSILLALAAVLLIGNTIRLAIFSRRRE--IEVMKLVGATDSFIRRPFLYEGMLIGLLGALIALALAALLLAGY 243 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHhccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666667777765 345566775 488889987554444455444444433333333
No 38
>PRK00523 hypothetical protein; Provisional
Probab=21.32 E-value=66 Score=27.60 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhheeeeeccchhhHHHHHH
Q 010764 4 SLVWLVIEAGVGIAVLVRCFVNKKSMETEIIDR 36 (502)
Q Consensus 4 ALLgLil~~~VgiYVfIqcFVDp~~Lrt~i~~k 36 (502)
.+..+++.++..+.+++-||+-++-+++++++.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~~N 37 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIREN 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444455566677888999888888887653
No 39
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=20.97 E-value=71 Score=34.53 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 010764 46 FATVVAICTAVSMLACIPLGELFFFH 71 (502)
Q Consensus 46 f~~Vvai~llLalvSlvlLGhLLfFH 71 (502)
|++.++|-++++++-+++|+-.+|||
T Consensus 285 ~~vtl~iPl~i~llL~llLs~Imc~r 310 (386)
T PF05510_consen 285 FLVTLAIPLIIALLLLLLLSYIMCCR 310 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheec
Confidence 55566777788888888899988887
No 40
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.91 E-value=1.7e+02 Score=35.65 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHhCCchHHHHHHHHhh
Q 010764 73 ILIRKGITTYEYVVAMRAM 91 (502)
Q Consensus 73 yLi~KGITTYEYIva~R~q 91 (502)
+++..+.=.|+-.+++|++
T Consensus 724 l~i~~RRlA~~Ra~~rR~~ 742 (1109)
T PRK10929 724 MLIQRRRIAFDRAKQRRAE 742 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555679998888875
No 41
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=20.73 E-value=2e+02 Score=26.47 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCchH--HHHHHHH
Q 010764 46 FATVVAICTAVSMLACIPLGELFFFHMILIRKGITTY--EYVVAMR 89 (502)
Q Consensus 46 f~~Vvai~llLalvSlvlLGhLLfFHIyLi~KGITTY--EYIva~R 89 (502)
|+.+.+|++++.++=++ |. ++|.+==..|++--| ||+.+.|
T Consensus 15 FLF~~AIFiAItIlYIL-La--lL~EvPkYIK~~VrYlVEYlTRRR 57 (117)
T PF07234_consen 15 FLFFGAIFIAITILYIL-LA--LLFEVPKYIKELVRYLVEYLTRRR 57 (117)
T ss_pred HHHHHHHHHHHHHHHHH-HH--HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555554443222 21 345555566777777 8999888
No 42
>COG2881 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.71 E-value=1.9e+02 Score=28.41 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhheeeeeccchhhHHHHHHhCCC--ccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCchHH
Q 010764 6 VWLVIEAGVGIAVLVRCFVNKKSMETEIIDRLGDG--FSRAPFATVVAICTAVSMLACIPLGELFFFHMILIRKGITTYE 83 (502)
Q Consensus 6 LgLil~~~VgiYVfIqcFVDp~~Lrt~i~~klG~s--fsrapf~~Vvai~llLalvSlvlLGhLLfFHIyLi~KGITTYE 83 (502)
-++.+.+.+.++-+--++..+..++ .+|.. +.....++.+++.+++.+++.+.+++++-+=.+...-|--|||
T Consensus 33 p~~~~~i~~~l~al~~~l~~~~i~~-----~~G~~~~~~~~~i~~~v~~~~i~~i~~~~iia~i~~~I~~~~~gG~Gt~e 107 (181)
T COG2881 33 PLLFALISVALSALSSLLAGPGILP-----ATGTSSGFSFAMILLAVLVAFILAILALFIIATILHLIASKVLGGEGTFE 107 (181)
T ss_pred cHHHHHHHHHHHHHHHHHhCcchhh-----ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 3455666677777777888887665 44433 4444445555666688888888888877655555555555555
Q ss_pred HHH
Q 010764 84 YVV 86 (502)
Q Consensus 84 YIv 86 (502)
=-+
T Consensus 108 gtl 110 (181)
T COG2881 108 GTL 110 (181)
T ss_pred hhH
Confidence 433
No 43
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=20.46 E-value=3.4e+02 Score=27.52 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=40.9
Q ss_pred hheeeeeccchhhHHHHHHhCC---Cc---------cchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----hCCch
Q 010764 18 VLVRCFVNKKSMETEIIDRLGD---GF---------SRAPFATVVAICTAVSMLACIPLGELFFFHMILIR----KGITT 81 (502)
Q Consensus 18 VfIqcFVDp~~Lrt~i~~klG~---sf---------srapf~~Vvai~llLalvSlvlLGhLLfFHIyLi~----KGITT 81 (502)
.+-.+-+++++-.+-+++++.. +| ..-.+..+.+++++++.+.+..+.-++.+|++-|- ++||.
T Consensus 150 ~~~~~~~s~eeq~~yI~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~ 229 (303)
T PF10327_consen 150 CFYFSGMSREEQMEYIRENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISK 229 (303)
T ss_pred HHHhcCCCHHHHHHHHHhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 3444556666654445544332 11 22355667777777777778888888899998654 45555
Q ss_pred HHH
Q 010764 82 YEY 84 (502)
Q Consensus 82 YEY 84 (502)
-.|
T Consensus 230 ~ty 232 (303)
T PF10327_consen 230 QTY 232 (303)
T ss_pred HHH
Confidence 444
Done!