Query 010764
Match_columns 502
No_of_seqs 115 out of 129
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 13:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 42.4 39 0.0013 27.6 5.1 24 67-90 29-52 (79)
2 1wv8_A TT1413, hypothetical pr 33.6 16 0.00054 29.9 1.5 15 365-379 7-21 (73)
3 2z73_A Rhodopsin; visual pigme 23.9 1E+02 0.0035 29.2 5.5 39 46-86 34-73 (448)
4 2hwn_E A kinase binding peptid 20.9 20 0.0007 24.3 -0.0 18 183-200 5-22 (26)
5 3lmz_A Putative sugar isomeras 14.1 1.4E+02 0.0047 26.6 3.7 28 175-202 16-43 (257)
6 2jx6_A DD K, dermadistinctin-K 12.4 85 0.0029 22.5 1.4 21 184-204 3-23 (34)
7 2knc_B Integrin beta-3; transm 11.9 86 0.003 25.5 1.5 37 56-95 15-52 (79)
8 1zza_A Stannin, AG8_1; helix, 11.8 99 0.0034 26.0 1.9 11 83-93 36-46 (90)
9 4eiy_A Adenosine receptor A2A/ 10.3 3.6E+02 0.012 25.0 5.3 26 61-86 44-70 (447)
10 2dw3_A Intrinsic membrane prot 9.9 1.6E+02 0.0054 24.6 2.4 21 48-68 34-54 (77)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.39 E-value=39 Score=27.60 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHh
Q 010764 67 LFFFHMILIRKGITTYEYVVAMRA 90 (502)
Q Consensus 67 LLfFHIyLi~KGITTYEYIva~R~ 90 (502)
|+++.++.+.+-..-|.=.-+.|+
T Consensus 29 lliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 29 LLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444443
No 2
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=33.65 E-value=16 Score=29.94 Aligned_cols=15 Identities=40% Similarity=0.838 Sum_probs=12.4
Q ss_pred ceeeccCCCceeeec
Q 010764 365 SVVWDQEAGRYVSVP 379 (502)
Q Consensus 365 SVvWDqeAGRyVS~p 379 (502)
-..||.|||-||...
T Consensus 7 ~~~~Deeagv~vA~s 21 (73)
T 1wv8_A 7 QALWDGEAGVWVAES 21 (73)
T ss_dssp EEEEETTTTEEEEEC
T ss_pred EEEEeCCCCEEEEEC
Confidence 468999999999763
No 3
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=23.92 E-value=1e+02 Score=29.19 Aligned_cols=39 Identities=8% Similarity=0.068 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCC-chHHHHH
Q 010764 46 FATVVAICTAVSMLACIPLGELFFFHMILIRKGI-TTYEYVV 86 (502)
Q Consensus 46 f~~Vvai~llLalvSlvlLGhLLfFHIyLi~KGI-TTYEYIv 86 (502)
+.++.+++++++++ .++|.++++.+++.+|.+ +++.+++
T Consensus 34 ~~~~~i~~~ii~i~--gi~gN~lvi~vi~~~~~~~~~~~~ll 73 (448)
T 2z73_A 34 YYSLGIFIGICGII--GCGGNGIVIYLFTKTKSLQTPANMFI 73 (448)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHCSTTCSTTHHHH
T ss_pred HHHHHHHHHHHHHH--HHhhHHHhhhhhhhccccCCccchHH
Confidence 33333343443333 347888888887776653 3444443
No 4
>2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
Probab=20.87 E-value=20 Score=24.31 Aligned_cols=18 Identities=44% Similarity=0.743 Sum_probs=15.4
Q ss_pred cchhccCCHHHHHHHHHH
Q 010764 183 AWKLAKLDSSEAMRAAAK 200 (502)
Q Consensus 183 pWkLAkLn~eea~kAAak 200 (502)
+||+|||=-+++|.-+.+
T Consensus 5 awkiakmiv~dvmqq~~~ 22 (26)
T 2hwn_E 5 AWKIAKMIVSDVMQQCKK 22 (26)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 799999999999987644
No 5
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=14.12 E-value=1.4e+02 Score=26.60 Aligned_cols=28 Identities=4% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCCceeeccchhccCCHHHHHHHHHHHH
Q 010764 175 PKRSVRISAWKLAKLDSSEAMRAAAKAR 202 (502)
Q Consensus 175 ~~~~VkIspWkLAkLn~eea~kAAakAR 202 (502)
.+-.+.|+.|.+-.++-+|+++.|+++-
T Consensus 16 ~~~klg~~~~~~~~~~~~~~l~~~~~~G 43 (257)
T 3lmz_A 16 NPFHLGMAGYTFVNFDLDTTLKTLERLD 43 (257)
T ss_dssp CSSEEEECGGGGTTSCHHHHHHHHHHTT
T ss_pred CceEEEEEEEeecCCCHHHHHHHHHHhC
Confidence 5678999999999999999999998874
No 6
>2jx6_A DD K, dermadistinctin-K; peptide, alpha helix, amphipathic character, C-terminal carboxyamidation, membrane peptide; NMR {Phyllomedusa distincta} PDB: 2k9b_A
Probab=12.41 E-value=85 Score=22.53 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=14.4
Q ss_pred chhccCCHHHHHHHHHHHHhh
Q 010764 184 WKLAKLDSSEAMRAAAKARAS 204 (502)
Q Consensus 184 WkLAkLn~eea~kAAakAR~~ 204 (502)
|.-+|---.||.+||++|--+
T Consensus 3 WskIK~~gk~aa~aaakAAgk 23 (34)
T 2jx6_A 3 WSKIKAAGKEAAKAAAKAAGK 23 (34)
T ss_dssp CCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666667888888777543
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.89 E-value=86 Score=25.52 Aligned_cols=37 Identities=24% Similarity=0.160 Sum_probs=18.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhCCch-HHHHHHHHhhhcCC
Q 010764 56 VSMLACIPLGELFFFHMILIRKGITT-YEYVVAMRAMSEAP 95 (502)
Q Consensus 56 LalvSlvlLGhLLfFHIyLi~KGITT-YEYIva~R~q~e~~ 95 (502)
+++++.++|-=|+ ++|+||-++| ||.---.|.++|.+
T Consensus 15 ~gvi~gilliGll---llliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 15 LSVMGAILLIGLA---ALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443444 4666665544 44444445555544
No 8
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=11.84 E-value=99 Score=25.96 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=5.4
Q ss_pred HHHHHHHhhhc
Q 010764 83 EYVVAMRAMSE 93 (502)
Q Consensus 83 EYIva~R~q~e 93 (502)
.|+.-||--+.
T Consensus 36 cylrlqri~qs 46 (90)
T 1zza_A 36 CYLRLQRISQS 46 (90)
T ss_dssp TTTSSCSSCSS
T ss_pred HHHHHHHHhcc
Confidence 45555554333
No 9
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=10.26 E-value=3.6e+02 Score=24.98 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=16.8
Q ss_pred HhhhhhHHHHHHHHHHhCC-chHHHHH
Q 010764 61 CIPLGELFFFHMILIRKGI-TTYEYVV 86 (502)
Q Consensus 61 lvlLGhLLfFHIyLi~KGI-TTYEYIv 86 (502)
+.++|.++++.+++..|.+ +..++++
T Consensus 44 ~gi~gN~~vl~~~~~~~~l~~~~~~~l 70 (447)
T 4eiy_A 44 LAILGNVLVCWAVWLNSNLQNVTNYFV 70 (447)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCcHHHHHH
Confidence 4457899988888876663 3344443
No 10
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=9.89 E-value=1.6e+02 Score=24.56 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHH
Q 010764 48 TVVAICTAVSMLACIPLGELF 68 (502)
Q Consensus 48 ~Vvai~llLalvSlvlLGhLL 68 (502)
.+.++.+++.++++..+|++|
T Consensus 34 Av~f~~~~~~lv~l~~iG~~L 54 (77)
T 2dw3_A 34 GGVFFGTLLLIGFFRVVGRML 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344444555555555566543
Done!