Query 010764
Match_columns 502
No_of_seqs 115 out of 129
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 13:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010764.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010764hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wv8a1 d.304.1.1 (A:2-72) Hyp 38.0 5.4 0.00039 30.9 1.3 16 364-379 5-20 (71)
2 d2g0wa1 c.1.15.4 (A:10-284) Hy 35.4 11 0.0008 31.8 3.1 26 176-201 1-27 (275)
3 d1u19a_ f.13.1.2 (A:) Rhodopsi 16.5 96 0.007 25.7 5.5 39 46-86 37-76 (348)
4 d1qgta_ a.62.1.1 (A:) Hepatiti 13.4 40 0.0029 28.3 2.0 27 62-88 95-122 (142)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 12.6 25 0.0018 27.0 0.5 23 4-26 36-58 (100)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 12.6 90 0.0066 23.0 3.8 22 42-63 2-23 (158)
7 d1r2za1 a.156.1.2 (A:135-228) 12.3 56 0.0041 25.0 2.6 26 178-203 49-75 (94)
8 d1h21a_ a.138.1.3 (A:) Dimeric 12.0 49 0.0035 30.0 2.3 19 183-201 11-29 (240)
9 d1t1va_ c.47.1.14 (A:) SH3BGRL 11.6 35 0.0026 25.3 1.1 13 132-144 57-69 (93)
10 d1k82a1 a.156.1.2 (A:129-216) 11.5 63 0.0046 24.4 2.6 26 178-203 49-75 (88)
No 1
>d1wv8a1 d.304.1.1 (A:2-72) Hypothetical protein TTHA1013 {Thermus thermophilus [TaxId: 274]}
Probab=37.97 E-value=5.4 Score=30.90 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=12.9
Q ss_pred cceeeccCCCceeeec
Q 010764 364 TSVVWDQEAGRYVSVP 379 (502)
Q Consensus 364 ~SVvWDqeAGRyVS~p 379 (502)
-..+||.|||-+|--.
T Consensus 5 V~a~WD~EAgVWva~s 20 (71)
T d1wv8a1 5 VQALWDGEAGVWVAES 20 (71)
T ss_dssp EEEEEETTTTEEEEEC
T ss_pred EEEEEcccCCEEEEEc
Confidence 3579999999999653
No 2
>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}
Probab=35.43 E-value=11 Score=31.83 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCceeeccchh-ccCCHHHHHHHHHHH
Q 010764 176 KRSVRISAWKL-AKLDSSEAMRAAAKA 201 (502)
Q Consensus 176 ~~~VkIspWkL-AkLn~eea~kAAakA 201 (502)
|-++.||.|+| .+++-||++++||++
T Consensus 1 ~~~i~i~~~tl~~~~~lee~l~~aa~~ 27 (275)
T d2g0wa1 1 KCPITISSYTLGTEVSFPKRVKVAAEN 27 (275)
T ss_dssp CCCEEECGGGGTTTSCHHHHHHHHHHT
T ss_pred CCCeEeeHhHhCCCCCHHHHHHHHHHh
Confidence 45799999999 699999999999987
No 3
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.46 E-value=96 Score=25.71 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCc-hHHHHH
Q 010764 46 FATVVAICTAVSMLACIPLGELFFFHMILIRKGIT-TYEYVV 86 (502)
Q Consensus 46 f~~Vvai~llLalvSlvlLGhLLfFHIyLi~KGIT-TYEYIv 86 (502)
+.++++++.++.++ .++|.++++.+++..|.+. .-+|++
T Consensus 37 ~~~~~~~~~ii~v~--gi~gN~lvi~vi~~~k~lr~~~~~~l 76 (348)
T d1u19a_ 37 FSMLAAYMFLLIML--GFPINFLTLYVTVQHKKLRTPLNYIL 76 (348)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHSTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHeehhhhccCCCCCHhHHHH
Confidence 34444555555444 3579999988888776653 334444
No 4
>d1qgta_ a.62.1.1 (A:) Hepatitis B viral capsid (hbcag) {Hepatitis B virus [TaxId: 10407]}
Probab=13.36 E-value=40 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=20.1
Q ss_pred hhhhhHHHHHHHHH-HhCCchHHHHHHH
Q 010764 62 IPLGELFFFHMILI-RKGITTYEYVVAM 88 (502)
Q Consensus 62 vlLGhLLfFHIyLi-~KGITTYEYIva~ 88 (502)
+=+-|||-|||--+ .-.-|--||++.-
T Consensus 95 lK~rqllwFHiscltFGreTv~EyLvSf 122 (142)
T d1qgta_ 95 LKIRQLLWFHISCLTFGRETVLEYLVSF 122 (142)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 34789999999644 4555678999865
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.64 E-value=25 Score=27.04 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhheeeeecc
Q 010764 4 SLVWLVIEAGVGIAVLVRCFVNK 26 (502)
Q Consensus 4 ALLgLil~~~VgiYVfIqcFVDp 26 (502)
+.+-+++++++.+|++++|..++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhccC
Confidence 34444555666666666665444
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=12.63 E-value=90 Score=22.99 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=11.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhh
Q 010764 42 SRAPFATVVAICTAVSMLACIP 63 (502)
Q Consensus 42 srapf~~Vvai~llLalvSlvl 63 (502)
+..-++++++|+-+|+.+++-.
T Consensus 2 TLIELlVViaIIgILaaia~P~ 23 (158)
T d2pila_ 2 TLIELMIVIAIVGILAAVALPA 23 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555443
No 7
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.32 E-value=56 Score=24.96 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=20.9
Q ss_pred ceeeccchhc-cCCHHHHHHHHHHHHh
Q 010764 178 SVRISAWKLA-KLDSSEAMRAAAKARA 203 (502)
Q Consensus 178 ~VkIspWkLA-kLn~eea~kAAakAR~ 203 (502)
.-+|+||+.+ .|+.+|.-+-...+|+
T Consensus 49 ~a~I~P~~~~~~Ls~~e~~~L~~~~~~ 75 (94)
T d1r2za1 49 RAGILPGRPAASLSSKEIERLHEEMVA 75 (94)
T ss_dssp HHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHhhHHHHHHHHHHHHH
Confidence 4579999887 8999998887777665
No 8
>d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}
Probab=11.95 E-value=49 Score=30.04 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=17.1
Q ss_pred cchhccCCHHHHHHHHHHH
Q 010764 183 AWKLAKLDSSEAMRAAAKA 201 (502)
Q Consensus 183 pWkLAkLn~eea~kAAakA 201 (502)
|||--|||.+++.+.|.+.
T Consensus 11 ~w~y~~LDp~~vak~Aye~ 29 (240)
T d1h21a_ 11 GWKPHKLDPKECAQVAYDG 29 (240)
T ss_dssp CSCCCCCCHHHHHHHHHHH
T ss_pred CCcceecCHHHHHHHHHHH
Confidence 8999999999999998764
No 9
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.61 E-value=35 Score=25.35 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.7
Q ss_pred CccCCCeeeeecC
Q 010764 132 GWCTPPRVFVDYQ 144 (502)
Q Consensus 132 ~wCTPPRiFvd~Q 144 (502)
.+.|+|.||++++
T Consensus 57 ~~~t~Pqifv~~~ 69 (93)
T d1t1va_ 57 PKATPPQIVNGNH 69 (93)
T ss_dssp TTCCSCEEEETTE
T ss_pred CCceeEEEEECCE
Confidence 4789999999843
No 10
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=11.49 E-value=63 Score=24.40 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=19.9
Q ss_pred ceeeccchhc-cCCHHHHHHHHHHHHh
Q 010764 178 SVRISAWKLA-KLDSSEAMRAAAKARA 203 (502)
Q Consensus 178 ~VkIspWkLA-kLn~eea~kAAakAR~ 203 (502)
.-+|+||+.+ .|+.+|.-+-...+|+
T Consensus 49 ~a~I~P~~~~~~L~~~~~~~L~~~i~~ 75 (88)
T d1k82a1 49 AAGIHPDRLASSLSLAECELLARVIKA 75 (88)
T ss_dssp HHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHCCCccChHHHCCHHHHHHHHHHHHH
Confidence 3479999887 7998888777666654
Done!