BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010765
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L FA
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIFA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLSEKVEDWSDERFWTELKA----RLPSE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYFVQVPLSEKVEDWSDERFWTELKA----RLPSE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGAHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLSEKVEDWSDERFWTELKA----RLPSE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLSEKVEDWSDERFWTELKA----RLPSE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLSEKVEDWSDERFWTELKA----RLPSE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 118/301 (39%), Gaps = 38/301 (12%)
Query: 69 LAHTLGKDGRRVHVIE-----RDVTEPDRIVDC-VEEIDAQQVLGYALFKDGKSTRLSYP 122
LA+ LG+ G RV V+E R + D + + ++A +L + G R+ +
Sbjct: 21 LAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGG---RVRHE 77
Query: 123 LEKFHADVSGRSFH------NGRFIQRMREKAASLPNVRLE-QGTVTSLLEENGTIKGVQ 175
LE +H R F+ G FI E L +++ + TV L E I+ VQ
Sbjct: 78 LEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETR--IEAVQ 135
Query: 176 ---------YKTKDGQELRAYAPLTIV-CDGCFSNLRRSLCKPKVD---VPSCFVGLVLE 222
+ DG+ LR P +V DG S +RR L V+ PS LV
Sbjct: 136 RDERHAIDQVRLNDGRVLR---PRVVVGADGIASYVRRRLLDIDVERRPYPSPM--LVGT 190
Query: 223 NCQLPFANHGHVILADPSPIL--FYPISSTEVRCLVDVPGQKVPSISNGEMANYLKAMVA 280
P + + D L FYPI R +V P ++ + L+ +
Sbjct: 191 FALAPCVAERNRLYVDSQGGLAYFYPIGFDRARLVVSFPREEARELMADTRGESLRRRLQ 250
Query: 281 PQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVAL 340
V E EA + + +P + D ++GDA + HP+TG GM +A+
Sbjct: 251 RFVGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAI 310
Query: 341 S 341
Sbjct: 311 E 311
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLSEKVEDWSDERFWTELKA----RLPSE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLDLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYAVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFRGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T + V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSQYYVQVPLSEKVEDWSDERFWTELKA----RLPSE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG +S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISSQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P RS +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 29/201 (14%)
Query: 179 KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDV-----PSCFVGLVLE----NCQLPFA 229
+DG+ LR CDG R+S+ ++ V P ++GL+ + + +L +A
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202
Query: 230 NH--GHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPE 286
NH G + + S +T R V VP +KV S+ LKA ++P E
Sbjct: 203 NHPRGFALCSQRS--------ATRSRYYVQVPLTEKVEDWSDERFWTELKA----RLPAE 250
Query: 287 LHEAFVS--AVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344
+ E V+ ++E+ P S +P L GDA ++ P G+ +A SD+
Sbjct: 251 VAEKLVTGPSLEKS---IAPLTSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVS 307
Query: 345 VLRNLLKPLHDFNDAASLGRY 365
L LL + L RY
Sbjct: 308 TLYRLLLKAYREGRGELLERY 328
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 285 PELHEAFVSAVERGNIRTMPNRSMPAD-PQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 343
P LH V + NI + RS P P + L+GDA + P TG G AL D
Sbjct: 280 PSLH-TLVQQSDXENISPLHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGANTALRDA 338
Query: 344 VVLRNLL 350
++L L
Sbjct: 339 LLLTQKL 345
>pdb|3SZE|A Chain A, Crystal Structure Of The Passenger Domain Of The E. Coli
Autotransporter Espp
Length = 968
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 397 QARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSP 456
+ +KE R+ D GGV +T ++L + LS+ H AIY G P+P
Sbjct: 481 ETKKENRRLILD----GGVDTTNDISLRN----TQLSMQGHATEHAIYRDGAFSCSLPAP 532
Query: 457 KRMWIGARLISGASGIIFPIIKAEG 481
R G+ ++G +K G
Sbjct: 533 MRFLCGSDYVAGMQNTEADAVKQNG 557
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
pdb|2OHY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
Length = 539
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 324 AFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTL 383
A NMR + G G+TV +D+ R L K D YL+ Y+LR I +
Sbjct: 264 AANMRALMRGSGLTVEHADL--RRELQKDKEAGKDVQRSEIYLQKAYSLR-----AIPQV 316
Query: 384 AGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAI 443
GA+ + + R E+ A + L F + + + +P++ + F +A+
Sbjct: 317 VGAVRDTLYHARHKLRIELNSANDNPL----FFEGKEIFHGANFHGQPIAFAMDFVTIAL 372
Query: 444 YGVGRL 449
+G L
Sbjct: 373 TQLGVL 378
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
pdb|2QVE|B Chain B, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
Length = 526
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 324 AFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTL 383
A NMR + G G+TV +D+ R L K D YL+ Y+LR I +
Sbjct: 251 AANMRALMRGSGLTVEHADL--RRELQKDKEAGKDVQRSEIYLQKAYSLR-----AIPQV 303
Query: 384 AGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAI 443
GA+ + + R E+ A + L F + + + +P++ + F +A+
Sbjct: 304 VGAVRDTLYHARHKLRIELNSANDNPL----FFEGKEIFHGANFHGQPIAFAMDFVTIAL 359
Query: 444 YGVGRL 449
+G L
Sbjct: 360 TQLGVL 365
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam
pdb|2RJR|B Chain B, Substrate Mimic Bound To Sgtam
pdb|2RJS|A Chain A, Sgtam Bound To Substrate Mimic
pdb|2RJS|B Chain B, Sgtam Bound To Substrate Mimic
Length = 537
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 324 AFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTL 383
A NMR + G G+TV +D+ R L K D YL+ Y+LR I +
Sbjct: 262 AANMRALMRGSGLTVEHADL--RRELQKDKEAGKDVQRSEIYLQKAYSLR-----AIPQV 314
Query: 384 AGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAI 443
GA+ + + R E+ A + L F + + + +P++ + F +A+
Sbjct: 315 VGAVRDTLYHARHKLRIELNSANDNPL----FFEGKEIFHGANFHGQPIAFAMDFVTIAL 370
Query: 444 YGVGRL 449
+G L
Sbjct: 371 TQLGVL 376
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 253 RCLVDVPGQKVPSISNGEMANYLKAMV----APQVPPELHEAFVSAVERGNIRTMPNRSM 308
+C + + G + S E NY + + +P VP LHE V VER N+ T ++ +
Sbjct: 145 KCSIHLAGLE-DSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLI 203
Query: 309 PAD 311
D
Sbjct: 204 EFD 206
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
pdb|3KDZ|B Chain B, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
Length = 537
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 324 AFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTL 383
A NMR + G G+TV +D+ R L K D YL+ Y+LR I +
Sbjct: 262 AANMRALMRGSGLTVEHADL--RRELQKDKEAGKDVQRSEIYLQKAYSLR-----AIPQV 314
Query: 384 AGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAI 443
GA+ + + R E+ A + L F + + + +P++ + F +A+
Sbjct: 315 VGAVRDTLYHARHKLRIELNSANDNPL----FFEGKEIFHGANFHGQPIAFAMDFVTIAL 370
Query: 444 YGVGRL 449
+G L
Sbjct: 371 TQLGVL 376
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
pdb|3KDY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
Length = 537
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 324 AFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTL 383
A NMR + G G+TV +D+ R L K D YL+ Y+LR I +
Sbjct: 262 AANMRALMRGSGLTVEHADL--RRELQKDKEAGKDVQRSEIYLQKAYSLR-----AIPQV 314
Query: 384 AGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAI 443
GA+ + + R E+ A + L F + + + +P++ + F +A+
Sbjct: 315 VGAVRDTLYHARHKLRIELNSANDNPL----FFEGKEIFHGANFHGQPIAFAMDFVTIAL 370
Query: 444 YGVGRL 449
+G L
Sbjct: 371 TQLGVL 376
>pdb|3OZ2|A Chain A, Crystal Structure Of A Geranylgeranyl Bacteriochlorophyll
Reductase- Like (Ta0516) From Thermoplasma Acidophilum
At 1.60 A Resolution
Length = 397
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 312 PQPTPGALLMGDAFNMRHPLTGGGMTVAL 340
P PG L+GDA + P+TGGG+ A+
Sbjct: 273 PITXPGLXLVGDAARLIDPITGGGIANAI 301
>pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua
From Thermus Thermophilus Hb8
pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua
From Thermus Thermophilus Hb8
Length = 249
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 258 VPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPG 317
+P +KVP N + LK + A +V P+ H A A+ R + R P P+P
Sbjct: 70 IPVEKVPEALNRLLPEDLKVVGAREVAPDFH-ARKDALWRAYRYRILVR-----PHPSP- 122
Query: 318 ALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLL 350
LL A +R PL M ALS ++ N L
Sbjct: 123 -LLRHRALWVRRPLDLEAMEEALSLLLGRHNFL 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,667,163
Number of Sequences: 62578
Number of extensions: 603448
Number of successful extensions: 1233
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 33
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)